Query 018780
Match_columns 350
No_of_seqs 283 out of 1443
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:58:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 3.1E-34 6.8E-39 259.1 4.8 175 2-182 1-183 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 4E-30 8.7E-35 200.1 2.3 73 3-76 1-73 (77)
3 cd00266 MADS_SRF_like SRF-like 99.9 2.4E-28 5.3E-33 192.8 4.0 79 3-81 1-79 (83)
4 smart00432 MADS MADS domain. 99.9 9.1E-27 2E-31 171.7 3.1 58 3-60 1-58 (59)
5 cd00120 MADS MADS: MCM1, Agamo 99.9 2.9E-26 6.3E-31 169.1 2.6 58 3-60 1-58 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 3.8E-25 8.3E-30 158.2 -4.3 51 10-60 1-51 (51)
7 KOG0015 Regulator of arginine 99.7 1.4E-18 3E-23 162.7 0.9 67 2-69 62-128 (338)
8 PF01486 K-box: K-box region; 99.4 8.9E-13 1.9E-17 107.5 7.9 84 113-196 13-97 (100)
9 COG5068 ARG80 Regulator of arg 99.3 5.8E-13 1.2E-17 130.4 1.3 66 2-68 81-146 (412)
10 PF07106 TBPIP: Tat binding pr 86.4 7.1 0.00015 34.4 9.8 59 111-169 108-166 (169)
11 PF10584 Proteasome_A_N: Prote 76.1 0.81 1.8E-05 27.4 -0.1 15 43-57 2-16 (23)
12 PHA03155 hypothetical protein; 69.3 32 0.00069 28.8 7.7 57 112-168 8-65 (115)
13 PF05812 Herpes_BLRF2: Herpesv 61.4 43 0.00094 28.2 7.2 58 113-170 4-66 (118)
14 KOG4603 TBP-1 interacting prot 60.8 77 0.0017 28.6 8.9 132 37-179 45-182 (201)
15 PRK04098 sec-independent trans 59.5 22 0.00047 31.5 5.3 82 43-159 14-95 (158)
16 PF14723 SSFA2_C: Sperm-specif 56.6 33 0.00071 30.8 5.9 19 148-166 159-177 (179)
17 PHA03162 hypothetical protein; 53.0 89 0.0019 26.9 7.7 59 112-170 13-76 (135)
18 PF06008 Laminin_I: Laminin Do 51.3 99 0.0022 29.1 8.9 56 113-168 88-143 (264)
19 PF15030 DUF4527: Protein of u 50.5 69 0.0015 30.4 7.3 25 146-170 45-69 (277)
20 COG4575 ElaB Uncharacterized c 48.0 90 0.0019 25.7 6.8 50 115-171 11-60 (104)
21 PHA02592 52 DNA topisomerase I 46.4 2.2E+02 0.0047 29.4 10.9 29 43-74 298-326 (439)
22 COG3883 Uncharacterized protei 44.8 1.2E+02 0.0025 29.3 8.1 24 147-170 79-102 (265)
23 PRK09841 cryptic autophosphory 44.4 3E+02 0.0065 30.1 12.3 108 65-173 247-367 (726)
24 PF06005 DUF904: Protein of un 42.5 51 0.0011 25.3 4.3 33 145-182 1-33 (72)
25 PF11559 ADIP: Afadin- and alp 41.7 2.2E+02 0.0048 24.3 13.9 51 114-172 68-118 (151)
26 PF09941 DUF2173: Uncharacteri 40.1 19 0.00042 29.8 1.8 27 33-60 3-29 (108)
27 TIGR02231 conserved hypothetic 38.0 3.6E+02 0.0078 28.1 11.3 38 144-182 123-160 (525)
28 PF07544 Med9: RNA polymerase 37.2 1.5E+02 0.0032 23.1 6.4 42 116-159 25-70 (83)
29 PF13870 DUF4201: Domain of un 36.3 1.6E+02 0.0034 26.0 7.3 58 115-172 9-66 (177)
30 COG2433 Uncharacterized conser 33.6 2.5E+02 0.0054 30.2 9.0 17 149-165 451-467 (652)
31 TIGR01478 STEVOR variant surfa 31.9 1.3E+02 0.0027 29.4 6.1 45 8-73 25-69 (295)
32 KOG0994 Extracellular matrix g 31.2 3.4E+02 0.0074 31.7 9.9 62 112-173 1225-1292(1758)
33 PF07106 TBPIP: Tat binding pr 30.6 2.4E+02 0.0051 24.7 7.4 29 144-172 108-136 (169)
34 PRK05561 DNA topoisomerase IV 29.1 6.3E+02 0.014 27.9 11.7 26 45-74 337-362 (742)
35 PF06698 DUF1192: Protein of u 28.9 1.4E+02 0.003 22.1 4.6 30 138-167 13-43 (59)
36 KOG4672 Uncharacterized conser 28.9 2.7E+02 0.0058 28.6 8.0 41 143-183 65-112 (487)
37 PF10168 Nup88: Nuclear pore c 28.8 6.6E+02 0.014 27.7 11.7 13 60-72 533-545 (717)
38 KOG2264 Exostosin EXT1L [Signa 28.5 6.2E+02 0.013 27.3 10.8 62 261-323 229-315 (907)
39 PRK11519 tyrosine kinase; Prov 28.0 7.8E+02 0.017 26.8 12.2 37 64-100 246-282 (719)
40 KOG0933 Structural maintenance 27.5 8.7E+02 0.019 28.0 12.2 27 48-75 654-680 (1174)
41 KOG4603 TBP-1 interacting prot 27.4 1.6E+02 0.0035 26.6 5.6 59 113-171 80-142 (201)
42 COG4831 Roadblock/LC7 domain [ 26.1 59 0.0013 26.5 2.4 29 31-60 3-31 (109)
43 PF06657 Cep57_MT_bd: Centroso 26.1 3.1E+02 0.0068 21.2 7.6 52 117-171 22-73 (79)
44 KOG4673 Transcription factor T 25.3 7.5E+02 0.016 27.3 10.8 17 166-182 604-620 (961)
45 COG5068 ARG80 Regulator of arg 24.7 49 0.0011 33.6 2.1 58 9-72 18-75 (412)
46 KOG0804 Cytoplasmic Zn-finger 24.4 8.2E+02 0.018 25.5 11.6 6 126-131 389-394 (493)
47 COG3074 Uncharacterized protei 24.4 2.3E+02 0.005 21.7 5.1 34 145-183 1-34 (79)
48 PF15188 CCDC-167: Coiled-coil 24.3 3.7E+02 0.0079 21.4 7.0 48 114-166 7-54 (85)
49 TIGR03185 DNA_S_dndD DNA sulfu 24.1 6.1E+02 0.013 27.2 10.4 7 255-261 553-559 (650)
50 PF15372 DUF4600: Domain of un 23.9 3.3E+02 0.0072 23.3 6.6 49 116-164 19-70 (129)
51 PRK11637 AmiB activator; Provi 23.7 3.7E+02 0.008 27.2 8.3 23 149-171 104-126 (428)
52 PF09158 MotCF: Bacteriophage 23.4 35 0.00076 28.1 0.6 54 6-75 19-73 (103)
53 PF08232 Striatin: Striatin fa 23.1 3.1E+02 0.0066 23.4 6.5 64 87-168 6-69 (134)
54 smart00787 Spc7 Spc7 kinetocho 23.0 7.2E+02 0.016 24.3 10.5 30 143-172 199-228 (312)
55 PF12252 SidE: Dot/Icm substra 23.0 5.6E+02 0.012 29.7 9.7 43 115-164 1134-1176(1439)
56 KOG0996 Structural maintenance 22.8 3.4E+02 0.0074 31.5 8.2 21 148-168 479-499 (1293)
57 PRK10884 SH3 domain-containing 22.4 3.7E+02 0.0081 24.7 7.3 12 118-129 99-110 (206)
58 COG2433 Uncharacterized conser 22.3 4.6E+02 0.01 28.3 8.6 22 114-135 445-466 (652)
59 KOG0971 Microtubule-associated 21.8 8.3E+02 0.018 27.9 10.6 54 113-166 326-389 (1243)
60 PF11629 Mst1_SARAH: C termina 21.6 1.7E+02 0.0037 20.9 3.7 24 144-167 7-34 (49)
61 TIGR00634 recN DNA repair prot 21.4 6.9E+02 0.015 26.3 10.1 63 7-75 95-157 (563)
62 PF11184 DUF2969: Protein of u 21.2 51 0.0011 25.2 1.2 62 2-72 1-69 (71)
63 PF10107 Endonuc_Holl: Endonuc 21.1 38 0.00082 29.9 0.5 9 302-310 99-107 (156)
64 PF13082 DUF3931: Protein of u 21.1 32 0.0007 24.8 0.0 37 5-41 6-44 (66)
65 PF01502 PRA-CH: Phosphoribosy 20.9 23 0.00051 27.4 -0.8 38 17-54 17-63 (75)
66 PF15066 CAGE1: Cancer-associa 20.2 8.1E+02 0.017 25.7 9.6 13 34-46 254-266 (527)
67 PRK15422 septal ring assembly 20.1 3.1E+02 0.0068 21.5 5.2 34 145-183 1-34 (79)
68 KOG1029 Endocytic adaptor prot 20.0 6.3E+02 0.014 28.3 9.2 15 149-163 473-487 (1118)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=3.1e-34 Score=259.09 Aligned_cols=175 Identities=30% Similarity=0.467 Sum_probs=124.7
Q ss_pred CCcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCC-CcHHHHHHHHhhcChHHHH
Q 018780 2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGK-RSIEEVIAKFAQLTPQERA 80 (350)
Q Consensus 2 MGR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~-ssme~ILeRY~~~s~~er~ 80 (350)
|||+||+|+||||+++|||||+|||+||||||+||||||||+||||||||+|++|+|++. .+|.+|++||...+..++.
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999998753 3399999999998877665
Q ss_pred HhhHHHHHHHHHH-HHhhhhhhhhHHhhccCchhHHHHHHHHHHHHHHHHHHh---HhhccccCCC-CCCCH-HHHHHHH
Q 018780 81 KRKLESLEALKKT-FKKLDHDVNVQEFLGTSSQTIEDLTNQARLLQSQLSEMH---RRLRYWTNPD-KINSV-EHLGQME 154 (350)
Q Consensus 81 k~~~~~~e~L~k~-~~kL~~e~~iqe~~~~~~~~vE~L~~e~~kLk~qle~lq---~rlr~~~ged-~~LSv-eEL~qLE 154 (350)
+........+... +.++........ .....+......+....+.+. ...+.+.+++ ..+++ ++|..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~ 154 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEE------LKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLE 154 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhh------ccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchh
Confidence 5443333333211 111110000000 000112222333333333333 3356666766 67788 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhhhh
Q 018780 155 NSLRDSLNHLRMHKENLGKQELM-SLECT 182 (350)
Q Consensus 155 ~qLe~sLk~IR~RK~qL~~~ql~-~Lq~k 182 (350)
.+|+.++..+|.++...+.+++. .++.+
T Consensus 155 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (195)
T KOG0014|consen 155 SQLESSLHNSRSSKSKPLSDSNFQVLQEK 183 (195)
T ss_pred hHHHHhhcCCCCCCCcCCcchhhhhhccc
Confidence 99999999999999888877765 44433
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=4e-30 Score=200.12 Aligned_cols=73 Identities=41% Similarity=0.787 Sum_probs=70.1
Q ss_pred CcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhhcCh
Q 018780 3 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLTP 76 (350)
Q Consensus 3 GR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~s~ 76 (350)
||+||+|++|||+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++ +++++||+||.+.+.
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s-~s~~~vl~ry~~~~~ 73 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSS-PSMEKIIERYQKTSG 73 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecC-CCHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999999999999999999975 778999999998764
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.94 E-value=2.4e-28 Score=192.77 Aligned_cols=79 Identities=42% Similarity=0.741 Sum_probs=73.5
Q ss_pred CcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhhcChHHHHH
Q 018780 3 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLTPQERAK 81 (350)
Q Consensus 3 GR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~s~~er~k 81 (350)
||+||+|++|+|+.+|+|||+|||.||+|||+||||||||+||+|||||+|++++|++.+++..||+||...+..++.+
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 79 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERKK 79 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhhc
Confidence 8999999999999999999999999999999999999999999999999999999876444999999999998776654
No 4
>smart00432 MADS MADS domain.
Probab=99.93 E-value=9.1e-27 Score=171.75 Aligned_cols=58 Identities=50% Similarity=0.883 Sum_probs=56.5
Q ss_pred CcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCC
Q 018780 3 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNG 60 (350)
Q Consensus 3 GR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s 60 (350)
||+||+|++|+|+..|++||+|||.||+|||+||||||||+||||||||+|+++.|++
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~ 58 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS 58 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccC
Confidence 8999999999999999999999999999999999999999999999999999999864
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.92 E-value=2.9e-26 Score=169.14 Aligned_cols=58 Identities=47% Similarity=0.836 Sum_probs=56.6
Q ss_pred CcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCC
Q 018780 3 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNG 60 (350)
Q Consensus 3 GR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s 60 (350)
||+||+|++|+|+..|++||+|||.||+|||+||||||||+||+|||||+|++++|++
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~ 58 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS 58 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence 8999999999999999999999999999999999999999999999999999999864
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.88 E-value=3.8e-25 Score=158.15 Aligned_cols=51 Identities=47% Similarity=0.827 Sum_probs=46.7
Q ss_pred EEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCC
Q 018780 10 KKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNG 60 (350)
Q Consensus 10 krIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s 60 (350)
|+|||+..|++||+|||.||+|||.|||+||||+||||||||+|+++.|||
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999975
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.71 E-value=1.4e-18 Score=162.71 Aligned_cols=67 Identities=43% Similarity=0.593 Sum_probs=62.6
Q ss_pred CCcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHH
Q 018780 2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIA 69 (350)
Q Consensus 2 MGR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILe 69 (350)
-||+||+|++|||+..|.|||||||.||||||+|||||+|.+|-|+|.|++|.+|.|+ .+.++-||.
T Consensus 62 ~gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFa-TpKLep~i~ 128 (338)
T KOG0015|consen 62 TGRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-TPKLEPMIT 128 (338)
T ss_pred cceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEec-ccccccccc
Confidence 3799999999999999999999999999999999999999999999999999999996 477777764
No 8
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.39 E-value=8.9e-13 Score=107.54 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhccccCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhccc
Q 018780 113 TIEDLTNQARLLQSQLSEMHRRLRYWTNPD-KINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECTTQFQNGICI 191 (350)
Q Consensus 113 ~vE~L~~e~~kLk~qle~lq~rlr~~~ged-~~LSveEL~qLE~qLe~sLk~IR~RK~qL~~~ql~~Lq~keq~~~~~~~ 191 (350)
..+.+..++.+|+.+++.++..+|++.|++ +.||++||.+||++|+.+|.+||+||++++.++|..|++|+..+.+.|.
T Consensus 13 ~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~ 92 (100)
T PF01486_consen 13 QHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENN 92 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999 8899999999999999999999999999999999999999888877776
Q ss_pred ccccC
Q 018780 192 PFRMG 196 (350)
Q Consensus 192 ~l~~~ 196 (350)
.|+.+
T Consensus 93 ~L~~~ 97 (100)
T PF01486_consen 93 QLRQK 97 (100)
T ss_pred HHHHH
Confidence 66544
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.29 E-value=5.8e-13 Score=130.41 Aligned_cols=66 Identities=36% Similarity=0.530 Sum_probs=61.7
Q ss_pred CCcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHH
Q 018780 2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVI 68 (350)
Q Consensus 2 MGR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~IL 68 (350)
|||+||.|..|+|+.+|.|||+||+.||+|||+||+||.|.+|.|+|.|.+|+++.|+. +..+.|+
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~t-p~~e~v~ 146 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTT-PKLESVV 146 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecC-Ccccccc
Confidence 89999999999999999999999999999999999999999999999999999999975 5555554
No 10
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.38 E-value=7.1 Score=34.42 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=50.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018780 111 SQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKE 169 (350)
Q Consensus 111 ~~~vE~L~~e~~kLk~qle~lq~rlr~~~ged~~LSveEL~qLE~qLe~sLk~IR~RK~ 169 (350)
..+.+++...+..|..+++.++.++..+.+.....|.+|...++.......+..|.||.
T Consensus 108 ~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 108 EPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEWKKRKR 166 (169)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888899999999988888777655668999999999999999999999985
No 11
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=76.13 E-value=0.81 Score=27.41 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=11.6
Q ss_pred ceeehhccCCCCCCC
Q 018780 43 DIILLMFSPTGKPSL 57 (350)
Q Consensus 43 eVaLIIFSp~GKl~~ 57 (350)
|-.+.+|||.||++.
T Consensus 2 D~~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 2 DRSITTFSPDGRLFQ 16 (23)
T ss_dssp SSSTTSBBTTSSBHH
T ss_pred CCCceeECCCCeEEe
Confidence 345789999999863
No 12
>PHA03155 hypothetical protein; Provisional
Probab=69.26 E-value=32 Score=28.76 Aligned_cols=57 Identities=19% Similarity=0.301 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhhccccCCC-CCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018780 112 QTIEDLTNQARLLQSQLSEMHRRLRYWTNPD-KINSVEHLGQMENSLRDSLNHLRMHK 168 (350)
Q Consensus 112 ~~vE~L~~e~~kLk~qle~lq~rlr~~~ged-~~LSveEL~qLE~qLe~sLk~IR~RK 168 (350)
..+|+|..++.+|+-++..|.+.++.-.+++ ..|+-.+=+.+-.+.-.+|...-++|
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~K 65 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEK 65 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999997665555 67888888777777777776655555
No 13
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=61.45 E-value=43 Score=28.21 Aligned_cols=58 Identities=22% Similarity=0.281 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhccccC----CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018780 113 TIEDLTNQARLLQSQLSEMHRRLRYWTN----PD-KINSVEHLGQMENSLRDSLNHLRMHKEN 170 (350)
Q Consensus 113 ~vE~L~~e~~kLk~qle~lq~rlr~~~g----ed-~~LSveEL~qLE~qLe~sLk~IR~RK~q 170 (350)
.+|+|..++.+|+-++..|.+.++.-.| ++ ..|+..+=+.|-.+.-.+|...-++|-.
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~KIe 66 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKKIE 66 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999988875 44 6789888888877777777766666533
No 14
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=60.77 E-value=77 Score=28.55 Aligned_cols=132 Identities=14% Similarity=0.171 Sum_probs=82.1
Q ss_pred hhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhhcChHHHHHhhH------HHHHHHHHHHHhhhhhhhhHHhhccC
Q 018780 37 SILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLTPQERAKRKL------ESLEALKKTFKKLDHDVNVQEFLGTS 110 (350)
Q Consensus 37 SvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~s~~er~k~~~------~~~e~L~k~~~kL~~e~~iqe~~~~~ 110 (350)
..=|=|+.+=|+|-.-||--.|.-.. +.|...+.++..+-.. +....|+++....+.+ |... .+
T Consensus 45 ~Ld~La~~Gki~~K~YGKqKIY~a~Q------DqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaE--ik~L--~s 114 (201)
T KOG4603|consen 45 TLDQLAQQGKIKEKMYGKQKIYFADQ------DQFDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAE--IKEL--SS 114 (201)
T ss_pred HHHHHHHcCchhHHhccceeeEeecH------HhhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHH--HH
Confidence 34477888888888888644443221 2344444433322111 1112233333333333 2111 13
Q ss_pred chhHHHHHHHHHHHHHHHHHHhHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018780 111 SQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSL 179 (350)
Q Consensus 111 ~~~vE~L~~e~~kLk~qle~lq~rlr~~~ged~~LSveEL~qLE~qLe~sLk~IR~RK~qL~~~ql~~L 179 (350)
+.++++++.++..|++.......++..+.......+.++-.+.++.-+...+.-|.||. +..+-++.+
T Consensus 115 ~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~~~~~wrk~kr-mf~ei~d~~ 182 (201)
T KOG4603|consen 115 ALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQKYCKEWRKRKR-MFREIIDKL 182 (201)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45678999999999999988888887775555567889999999999999999999987 555545443
No 15
>PRK04098 sec-independent translocase; Provisional
Probab=59.52 E-value=22 Score=31.54 Aligned_cols=82 Identities=15% Similarity=0.297 Sum_probs=44.7
Q ss_pred ceeehhccCCCCCCCCCCCCcHHHHHHHHhhcChHHHHHhhHHHHHHHHHHHHhhhhhhhhHHhhccCchhHHHHHHHHH
Q 018780 43 DIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQAR 122 (350)
Q Consensus 43 eVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~s~~er~k~~~~~~e~L~k~~~kL~~e~~iqe~~~~~~~~vE~L~~e~~ 122 (350)
=||||||+|. ||-... ..+-+.+.+|++.....+. .++.+. .+.++..+..
T Consensus 14 vVaLlvfGP~-KLP~~~--r~lGk~ir~~K~~~~~~k~---------------~l~~Ei-----------~~~elk~e~~ 64 (158)
T PRK04098 14 VVAIIFLGPD-KLPQAM--VDIAKFFKAVKKTINDAKS---------------TLDKEI-----------NIEEIKEEAL 64 (158)
T ss_pred HHHHhhcCch-HHHHHH--HHHHHHHHHHHHHHHHHHH---------------HHHHHH-----------hhHHHHHHHH
Confidence 3788999986 443332 3455666666554322111 011111 2346666667
Q ss_pred HHHHHHHHHhHhhccccCCCCCCCHHHHHHHHHHHHH
Q 018780 123 LLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRD 159 (350)
Q Consensus 123 kLk~qle~lq~rlr~~~ged~~LSveEL~qLE~qLe~ 159 (350)
+.+..++.....+| ..+++++|..+-.-+..
T Consensus 65 k~k~~l~~~~~~l~------~~~~~eel~~~~~~~~~ 95 (158)
T PRK04098 65 KYKKEFESAVESLK------KKLKFEELDDLKITAEN 95 (158)
T ss_pred HHHHHHHHHHHHHH------hccChHHHHHHhhhhhh
Confidence 77777776666555 23677777766544444
No 16
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=56.58 E-value=33 Score=30.79 Aligned_cols=19 Identities=37% Similarity=0.494 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 018780 148 EHLGQMENSLRDSLNHLRM 166 (350)
Q Consensus 148 eEL~qLE~qLe~sLk~IR~ 166 (350)
.||+.||.||++.+..||+
T Consensus 159 qElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 159 QELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 6889999999999998875
No 17
>PHA03162 hypothetical protein; Provisional
Probab=53.04 E-value=89 Score=26.85 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhhccccCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018780 112 QTIEDLTNQARLLQSQLSEMHRRLRYWTNP-----DKINSVEHLGQMENSLRDSLNHLRMHKEN 170 (350)
Q Consensus 112 ~~vE~L~~e~~kLk~qle~lq~rlr~~~ge-----d~~LSveEL~qLE~qLe~sLk~IR~RK~q 170 (350)
.++|+|..++.+|+-++..|.+.++.-.|+ |..|+-.+=+-+-.+.-..|...-++|-.
T Consensus 13 ~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kKIe 76 (135)
T PHA03162 13 PTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKKIE 76 (135)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999766443 34588888777777777777666666543
No 18
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=51.28 E-value=99 Score=29.15 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018780 113 TIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHK 168 (350)
Q Consensus 113 ~vE~L~~e~~kLk~qle~lq~rlr~~~ged~~LSveEL~qLE~qLe~sLk~IR~RK 168 (350)
+.++|...+..+...+.++......+.+.+..++-.+|...-...+.-|+.||.|-
T Consensus 88 ~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~ 143 (264)
T PF06008_consen 88 RAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRD 143 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677777778888888777777666664567889999999999999999999983
No 19
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=50.48 E-value=69 Score=30.40 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q 018780 146 SVEHLGQMENSLRDSLNHLRMHKEN 170 (350)
Q Consensus 146 SveEL~qLE~qLe~sLk~IR~RK~q 170 (350)
+.+|-..|-.+|...|..++.++++
T Consensus 45 s~dEa~~L~~~L~~kl~eLqkk~~E 69 (277)
T PF15030_consen 45 SRDEATRLQDELQGKLEELQKKQHE 69 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455555555555555555555544
No 20
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=48.05 E-value=90 Score=25.74 Aligned_cols=50 Identities=12% Similarity=0.153 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018780 115 EDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENL 171 (350)
Q Consensus 115 E~L~~e~~kLk~qle~lq~rlr~~~ged~~LSveEL~qLE~qLe~sLk~IR~RK~qL 171 (350)
+++..+++.|-..++++-+. ....+-+|+..|-..++..|+++|.|-...
T Consensus 11 ~~l~~el~~L~d~lEevL~s-------sg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~ 60 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKS-------SGSLAGDEAEELRSKAESALKEARDRLGDT 60 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------cccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55666666666666655332 134678999999999999999999886554
No 21
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=46.43 E-value=2.2e+02 Score=29.42 Aligned_cols=29 Identities=17% Similarity=0.395 Sum_probs=23.9
Q ss_pred ceeehhccCCCCCCCCCCCCcHHHHHHHHhhc
Q 018780 43 DIILLMFSPTGKPSLCNGKRSIEEVIAKFAQL 74 (350)
Q Consensus 43 eVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~ 74 (350)
-+-+++|.++|+|..|. ++.+||..|-..
T Consensus 298 ~~Nm~~~d~~g~~~~~~---~~~~Il~~f~~~ 326 (439)
T PHA02592 298 SQNITVINENGKLKVYE---NAEDLIRDFVEI 326 (439)
T ss_pred eeeEEEEecCCeeeecC---CHHHHHHHHHHH
Confidence 36788999999998883 589999998664
No 22
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.79 E-value=1.2e+02 Score=29.26 Aligned_cols=24 Identities=4% Similarity=0.165 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018780 147 VEHLGQMENSLRDSLNHLRMHKEN 170 (350)
Q Consensus 147 veEL~qLE~qLe~sLk~IR~RK~q 170 (350)
=.++..|+..++..-.+|++|++-
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~~ 102 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQEL 102 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888654
No 23
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=44.40 E-value=3e+02 Score=30.06 Aligned_cols=108 Identities=14% Similarity=0.197 Sum_probs=50.3
Q ss_pred HHHHHHHhhcChHHHHHhhHHHHHHHHHHHHhhhhhhh-----hHHhhccC-----chhHHHHHHHHHHHHHHHHHHhHh
Q 018780 65 EEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHDVN-----VQEFLGTS-----SQTIEDLTNQARLLQSQLSEMHRR 134 (350)
Q Consensus 65 e~ILeRY~~~s~~er~k~~~~~~e~L~k~~~kL~~e~~-----iqe~~~~~-----~~~vE~L~~e~~kLk~qle~lq~r 134 (350)
..+.+.|....-..+........++|.+++..++.+.. ++.|.... ....+.+-.++..++.++.+++..
T Consensus 247 N~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~ 326 (726)
T PRK09841 247 NSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFR 326 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666555444444444456666666655544432 23333211 112222334445555555444422
Q ss_pred hcc---ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018780 135 LRY---WTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLGK 173 (350)
Q Consensus 135 lr~---~~ged~~LSveEL~qLE~qLe~sLk~IR~RK~qL~~ 173 (350)
... ..+++. -.+..|..-...|+..+..++.+-..+-.
T Consensus 327 ~~~l~~~~~~~h-P~v~~l~~~~~~L~~~~~~l~~~~~~~p~ 367 (726)
T PRK09841 327 EAEISQLYKKDH-PTYRALLEKRQTLEQERKRLNKRVSAMPS 367 (726)
T ss_pred HHHHHHHhcccC-chHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 221 123332 23556665556666666666665544433
No 24
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=42.49 E-value=51 Score=25.27 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018780 145 NSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECT 182 (350)
Q Consensus 145 LSveEL~qLE~qLe~sLk~IR~RK~qL~~~ql~~Lq~k 182 (350)
+|++.|.+||..+..++..|..-+ ..+..|+.+
T Consensus 1 M~~E~l~~LE~ki~~aveti~~Lq-----~e~eeLke~ 33 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIALLQ-----MENEELKEK 33 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 578899999999999999986543 334555443
No 25
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=41.68 E-value=2.2e+02 Score=24.27 Aligned_cols=51 Identities=33% Similarity=0.460 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018780 114 IEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLG 172 (350)
Q Consensus 114 vE~L~~e~~kLk~qle~lq~rlr~~~ged~~LSveEL~qLE~qLe~sLk~IR~RK~qL~ 172 (350)
++.+...+.+|+.+++.+++.+. ..-.....++..+......++.-|+++-
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~--------~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELA--------SAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777777776665543 2234455556666555555555555543
No 26
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=40.14 E-value=19 Score=29.84 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=21.5
Q ss_pred hhhhhhccCcceeehhccCCCCCCCCCC
Q 018780 33 ANELSILCDIDIILLMFSPTGKPSLCNG 60 (350)
Q Consensus 33 A~ELSvLCdaeVaLIIFSp~GKl~~f~s 60 (350)
-.+|-.|-|| +|...||++|||.+|-|
T Consensus 3 l~~Lm~lpGv-~AAg~Fs~~G~l~e~~G 29 (108)
T PF09941_consen 3 LDKLMKLPGV-VAAGEFSDDGKLVEYKG 29 (108)
T ss_pred HHHhhcCCCe-EEEEEECCCCeEEeeec
Confidence 4567777777 45578999999999987
No 27
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=37.98 E-value=3.6e+02 Score=28.08 Aligned_cols=38 Identities=11% Similarity=0.040 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018780 144 INSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECT 182 (350)
Q Consensus 144 ~LSveEL~qLE~qLe~sLk~IR~RK~qL~~~ql~~Lq~k 182 (350)
..++.++.++-..+...+..++.++..+ ..++..++++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 160 (525)
T TIGR02231 123 EPDLKEWFQAFDFNGSEIERLLTEDREA-ERRIRELEKQ 160 (525)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4578888888888888888888777655 3334444443
No 28
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=37.20 E-value=1.5e+02 Score=23.11 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHhHhhccccCCCCCCCHH----HHHHHHHHHHH
Q 018780 116 DLTNQARLLQSQLSEMHRRLRYWTNPDKINSVE----HLGQMENSLRD 159 (350)
Q Consensus 116 ~L~~e~~kLk~qle~lq~rlr~~~ged~~LSve----EL~qLE~qLe~ 159 (350)
++......++.++......++.+.|.+ -|++ +|..||.+++.
T Consensus 25 d~~~~~~~lk~Klq~ar~~i~~lpgi~--~s~eeq~~~i~~Le~~i~~ 70 (83)
T PF07544_consen 25 DLDTATGSLKHKLQKARAAIRELPGID--RSVEEQEEEIEELEEQIRK 70 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcc--CCHHHHHHHHHHHHHHHHH
Confidence 444445555666655555555555543 3443 34444444443
No 29
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=36.28 E-value=1.6e+02 Score=26.01 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018780 115 EDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENLG 172 (350)
Q Consensus 115 E~L~~e~~kLk~qle~lq~rlr~~~ged~~LSveEL~qLE~qLe~sLk~IR~RK~qL~ 172 (350)
+.++-....++.++..++..++......++|.+-+..+|.-.-....++|.+|-..|.
T Consensus 9 ~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~ 66 (177)
T PF13870_consen 9 SKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELL 66 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555554444567777777776666666666666644443
No 30
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=33.60 E-value=2.5e+02 Score=30.22 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 018780 149 HLGQMENSLRDSLNHLR 165 (350)
Q Consensus 149 EL~qLE~qLe~sLk~IR 165 (350)
++..|+..|+..-.+++
T Consensus 451 eie~L~~~l~~~~r~~~ 467 (652)
T COG2433 451 EIEKLESELERFRREVR 467 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555444443
No 31
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=31.87 E-value=1.3e+02 Score=29.35 Aligned_cols=45 Identities=20% Similarity=0.384 Sum_probs=31.7
Q ss_pred eeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhh
Q 018780 8 KIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQ 73 (350)
Q Consensus 8 ~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~ 73 (350)
.|..|.|.+.|..+ +-| .||..|++ +.| .|-++|.|++|++.|.+
T Consensus 25 n~~li~n~tqr~t~-~sR------------~L~Ecel~---~~p-----~Y~nDpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTST-KSR------------LLAEIQRP---KNP-----HYHNDPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccc-cce------------ehhhhccc---cCC-----CCCCcHHHHHHHHHHhH
Confidence 46678888777665 223 46888775 333 46579999999998865
No 32
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=31.24 E-value=3.4e+02 Score=31.69 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhhccccCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018780 112 QTIEDLTNQARLLQSQLSEMHRRLRYWTNPD------KINSVEHLGQMENSLRDSLNHLRMHKENLGK 173 (350)
Q Consensus 112 ~~vE~L~~e~~kLk~qle~lq~rlr~~~ged------~~LSveEL~qLE~qLe~sLk~IR~RK~qL~~ 173 (350)
..++.+......|++++..+...+....... .+++-++|..|++..+..++-+++-++++.+
T Consensus 1225 ~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ 1292 (1758)
T KOG0994|consen 1225 EDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEK 1292 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666655554443221111 1355689999999888887777777777543
No 33
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=30.60 E-value=2.4e+02 Score=24.67 Aligned_cols=29 Identities=21% Similarity=0.237 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018780 144 INSVEHLGQMENSLRDSLNHLRMHKENLG 172 (350)
Q Consensus 144 ~LSveEL~qLE~qLe~sLk~IR~RK~qL~ 172 (350)
.++.+||...-.+|+.-+..+.+|-..|-
T Consensus 108 ~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 108 EPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888777777777777776655554
No 34
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=29.11 E-value=6.3e+02 Score=27.93 Aligned_cols=26 Identities=12% Similarity=0.440 Sum_probs=20.8
Q ss_pred eehhccCCCCCCCCCCCCcHHHHHHHHhhc
Q 018780 45 ILLMFSPTGKPSLCNGKRSIEEVIAKFAQL 74 (350)
Q Consensus 45 aLIIFSp~GKl~~f~s~ssme~ILeRY~~~ 74 (350)
-+++|.++|+|.. .++.+||..|-..
T Consensus 337 n~~~~d~~~~p~~----~~l~~il~~f~~~ 362 (742)
T PRK05561 337 NMNAIGLDGRPRV----KGLKEILSEWLDH 362 (742)
T ss_pred eEEEEccCCEEEE----CCHHHHHHHHHHH
Confidence 6788989999854 3699999998764
No 35
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=28.91 E-value=1.4e+02 Score=22.10 Aligned_cols=30 Identities=23% Similarity=0.198 Sum_probs=22.4
Q ss_pred ccCCC-CCCCHHHHHHHHHHHHHHHHHHHHH
Q 018780 138 WTNPD-KINSVEHLGQMENSLRDSLNHLRMH 167 (350)
Q Consensus 138 ~~ged-~~LSveEL~qLE~qLe~sLk~IR~R 167 (350)
..|.| +.||++||..--..|+.-+.+++.-
T Consensus 13 ~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 13 EIGEDLSLLSVEELEERIALLEAEIARLEAA 43 (59)
T ss_pred ccCCCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 44566 7799999998777777777777653
No 36
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=28.86 E-value=2.7e+02 Score=28.59 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhhhhh
Q 018780 143 KINSVEHLGQMENSLRDSLNHLRMHKENLGK-------QELMSLECTT 183 (350)
Q Consensus 143 ~~LSveEL~qLE~qLe~sLk~IR~RK~qL~~-------~ql~~Lq~ke 183 (350)
+.+-.+-++..|+-|....++.|+.=++.+. .....|+++|
T Consensus 65 ~p~q~~~~~lnEkvLkdkrKK~rEtfer~~rlye~~~p~~~~~L~r~e 112 (487)
T KOG4672|consen 65 NPFQIDVLRLNEKVLKDKRKKRRETFERGKRLYEATEPVMFSHLQRRE 112 (487)
T ss_pred CccccchhhhHHHHHHHHHHHHHHHHHHHHHhhcccChHHHHHHHHHh
Confidence 4455667888999999998888886554442 2345566654
No 37
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=28.77 E-value=6.6e+02 Score=27.67 Aligned_cols=13 Identities=8% Similarity=0.174 Sum_probs=5.8
Q ss_pred CCCcHHHHHHHHh
Q 018780 60 GKRSIEEVIAKFA 72 (350)
Q Consensus 60 s~ssme~ILeRY~ 72 (350)
+....-++|.++.
T Consensus 533 ~~~E~l~lL~~a~ 545 (717)
T PF10168_consen 533 SPQECLELLSQAT 545 (717)
T ss_pred CCHHHHHHHHHHH
Confidence 3344445554443
No 38
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=28.47 E-value=6.2e+02 Score=27.29 Aligned_cols=62 Identities=26% Similarity=0.331 Sum_probs=34.6
Q ss_pred ccccccccccccccccccccCC--------------CC-CCC-----CCccccCccccccc---CCCCcccccCCccCCC
Q 018780 261 LLSELSGTQSLRLQLGGQCSYI--------------PY-NVS-----LLNDKFQPVSEMNI---QENPVDYHVSGSLEVP 317 (350)
Q Consensus 261 ~~~~~~~~~~~~~~~~~q~~~~--------------~~-~~~-----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 317 (350)
++-+--..||+-++|.|...-+ || ... |+|- -+|.-..|+ +..-...+|.+.|+--
T Consensus 229 ~~ve~pd~ACiyi~lvge~q~P~~l~p~eleklyslp~w~~dg~Nhvl~Nl-~r~s~~~n~lyn~~t~raivvQssf~~~ 307 (907)
T KOG2264|consen 229 YLVETPDKACIYIHLVGEIQSPVVLTPAELEKLYSLPHWRTDGFNHVLFNL-GRPSDTQNLLYNFQTGRAIVVQSSFYTV 307 (907)
T ss_pred eEeeCCCccEEEEEEeccccCCCcCChHhhhhhhcCccccCCCcceEEEEc-cCccccccceeEeccCceEEEeecceee
Confidence 3444545689998887755322 32 221 3333 122222233 4444678888888755
Q ss_pred --CCCCCC
Q 018780 318 --RPGFDT 323 (350)
Q Consensus 318 --~~~~~~ 323 (350)
|||||-
T Consensus 308 q~RpgfDl 315 (907)
T KOG2264|consen 308 QIRPGFDL 315 (907)
T ss_pred eeccCCCc
Confidence 899994
No 39
>PRK11519 tyrosine kinase; Provisional
Probab=28.02 E-value=7.8e+02 Score=26.85 Aligned_cols=37 Identities=8% Similarity=0.248 Sum_probs=20.1
Q ss_pred HHHHHHHHhhcChHHHHHhhHHHHHHHHHHHHhhhhh
Q 018780 64 IEEVIAKFAQLTPQERAKRKLESLEALKKTFKKLDHD 100 (350)
Q Consensus 64 me~ILeRY~~~s~~er~k~~~~~~e~L~k~~~kL~~e 100 (350)
+..+.+.|.+..-..+........++|.+++.+++.+
T Consensus 246 aN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~ 282 (719)
T PRK11519 246 LNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSR 282 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666554444433444556666666555443
No 40
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=27.49 E-value=8.7e+02 Score=28.01 Aligned_cols=27 Identities=11% Similarity=0.417 Sum_probs=14.7
Q ss_pred hccCCCCCCCCCCCCcHHHHHHHHhhcC
Q 018780 48 MFSPTGKPSLCNGKRSIEEVIAKFAQLT 75 (350)
Q Consensus 48 IFSp~GKl~~f~s~ssme~ILeRY~~~s 75 (350)
||.|.|-+.-=+.+.+. ++|..++.+.
T Consensus 654 V~dP~GtlTGGs~~~~a-~~L~~l~~l~ 680 (1174)
T KOG0933|consen 654 VYDPSGTLTGGSRSKGA-DLLRQLQKLK 680 (1174)
T ss_pred eeCCCCcccCCCCCCcc-cHHHHHHHHH
Confidence 68888876542223333 3666665553
No 41
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=27.42 E-value=1.6e+02 Score=26.58 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhccccCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018780 113 TIEDLTNQARLLQSQLSEMHRRLRYWTNPD----KINSVEHLGQMENSLRDSLNHLRMHKENL 171 (350)
Q Consensus 113 ~vE~L~~e~~kLk~qle~lq~rlr~~~ged----~~LSveEL~qLE~qLe~sLk~IR~RK~qL 171 (350)
....|..++.+|.+++..++...+....+. ..|+++|++.--+.|..-.+.-|.|-..+
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~ 142 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNI 142 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677778888888877777665443 45889999988888877766666665444
No 42
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=26.10 E-value=59 Score=26.49 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=21.6
Q ss_pred hhhhhhhhccCcceeehhccCCCCCCCCCC
Q 018780 31 KKANELSILCDIDIILLMFSPTGKPSLCNG 60 (350)
Q Consensus 31 KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s 60 (350)
.|-.||--+-|| +|.=.|||+|||.+|-|
T Consensus 3 ekLdeLlqi~Gv-~AAGefs~DGkLv~Ykg 31 (109)
T COG4831 3 EKLDELLQIKGV-MAAGEFSPDGKLVEYKG 31 (109)
T ss_pred hhHHHHhCccce-eEeceeCCCCceEEeeC
Confidence 345666666665 45568999999999977
No 43
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=26.10 E-value=3.1e+02 Score=21.21 Aligned_cols=52 Identities=10% Similarity=0.211 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHhHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018780 117 LTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRMHKENL 171 (350)
Q Consensus 117 L~~e~~kLk~qle~lq~rlr~~~ged~~LSveEL~qLE~qLe~sLk~IR~RK~qL 171 (350)
|+.|+.-++.+..+++..++. .+...+...=..|+..|+..++++-.+-+|+
T Consensus 22 LqDE~~hm~~e~~~L~~~~~~---~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI 73 (79)
T PF06657_consen 22 LQDEFGHMKMEHQELQDEYKQ---MDPSLGRRKRRDLEQELEELVKRMEAKADQI 73 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---cccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433332 2335677888889999999999887664443
No 44
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=25.28 E-value=7.5e+02 Score=27.33 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhhhhh
Q 018780 166 MHKENLGKQELMSLECT 182 (350)
Q Consensus 166 ~RK~qL~~~ql~~Lq~k 182 (350)
.||++++..+|.+|+++
T Consensus 604 arrEd~~R~Ei~~LqrR 620 (961)
T KOG4673|consen 604 ARREDMFRGEIEDLQRR 620 (961)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47888999999999886
No 45
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=24.71 E-value=49 Score=33.59 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=44.8
Q ss_pred eEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHh
Q 018780 9 IKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFA 72 (350)
Q Consensus 9 ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~ 72 (350)
|+++-++..-..||.+|+.| ||+++||..+-+.||-..--...|+...-+++.-+-|+
T Consensus 18 i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~q~~a~~q 75 (412)
T COG5068 18 IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNEEPIEQTKAQLQ 75 (412)
T ss_pred cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCcccccccHHHHh
Confidence 88999999999999999999 99999999988888877654456655444444444333
No 46
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=24.40 E-value=8.2e+02 Score=25.48 Aligned_cols=6 Identities=17% Similarity=0.412 Sum_probs=2.2
Q ss_pred HHHHHH
Q 018780 126 SQLSEM 131 (350)
Q Consensus 126 ~qle~l 131 (350)
.++..+
T Consensus 389 ~k~~k~ 394 (493)
T KOG0804|consen 389 TKLKKC 394 (493)
T ss_pred HHHHHH
Confidence 333333
No 47
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.39 E-value=2.3e+02 Score=21.75 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018780 145 NSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECTT 183 (350)
Q Consensus 145 LSveEL~qLE~qLe~sLk~IR~RK~qL~~~ql~~Lq~ke 183 (350)
+|++=|.+||..+..++..| .|+.-+|++|+.|.
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEkn 34 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKN 34 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHh
Confidence 46777888888888887776 35556677777663
No 48
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=24.31 E-value=3.7e+02 Score=21.37 Aligned_cols=48 Identities=23% Similarity=0.277 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 018780 114 IEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRM 166 (350)
Q Consensus 114 vE~L~~e~~kLk~qle~lq~rlr~~~ged~~LSveEL~qLE~qLe~sLk~IR~ 166 (350)
|+.+...+...+.+++.+..+++- ..+|.+.-..||+.+....+++..
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~-----~eLs~e~R~~lE~E~~~l~~~l~~ 54 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRR-----RELSPEARRSLEKELNELKEKLEN 54 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcc-----cCCChHHHHHHHHHHHHHHHHhhc
Confidence 455566677778888888888762 247888888888776665555543
No 49
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=24.05 E-value=6.1e+02 Score=27.24 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=3.7
Q ss_pred CCCCccc
Q 018780 255 SGQDSSL 261 (350)
Q Consensus 255 ~g~~~~~ 261 (350)
||||...
T Consensus 553 S~Ge~~~ 559 (650)
T TIGR03185 553 SAGERQI 559 (650)
T ss_pred CHHHHHH
Confidence 5666433
No 50
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=23.87 E-value=3.3e+02 Score=23.35 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHhHhhccccCCC---CCCCHHHHHHHHHHHHHHHHHH
Q 018780 116 DLTNQARLLQSQLSEMHRRLRYWTNPD---KINSVEHLGQMENSLRDSLNHL 164 (350)
Q Consensus 116 ~L~~e~~kLk~qle~lq~rlr~~~ged---~~LSveEL~qLE~qLe~sLk~I 164 (350)
.|..++..|+.+++.+....+--.... +.|+++.|..|-++|+.-.+.+
T Consensus 19 QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~L 70 (129)
T PF15372_consen 19 QLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSL 70 (129)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 455666667777766654332221111 3478888888888887654443
No 51
>PRK11637 AmiB activator; Provisional
Probab=23.66 E-value=3.7e+02 Score=27.19 Aligned_cols=23 Identities=9% Similarity=0.176 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 018780 149 HLGQMENSLRDSLNHLRMHKENL 171 (350)
Q Consensus 149 EL~qLE~qLe~sLk~IR~RK~qL 171 (350)
++..++..|...-.+|..++..+
T Consensus 104 ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 104 QIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 52
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=23.42 E-value=35 Score=28.05 Aligned_cols=54 Identities=28% Similarity=0.487 Sum_probs=34.5
Q ss_pred cceeEEe-cCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhhcC
Q 018780 6 KLKIKKL-ENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLT 75 (350)
Q Consensus 6 Ki~ikrI-en~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~s 75 (350)
++++|.+ +|.+|=.|+|.||-.|+-+ -| ...+|..=.| |..-.+++++.|..+-
T Consensus 19 ~ie~K~~~~~RSN~~i~f~KRt~Girq--fE-------------i~n~G~~RI~-gYk~se~~~~~f~slG 73 (103)
T PF09158_consen 19 KIEVKEIVIDRSNYEIRFKKRTKGIRQ--FE-------------IRNKGEFRIF-GYKMSEEIIKKFTSLG 73 (103)
T ss_dssp T--EEEEEEETTEEEEEEEEEETTEEE--EE-------------EETTSEEEEE-EES--HHHHHHHHHTT
T ss_pred ceeeeeeEeeccceEEeeecccCceeE--EE-------------EecCCcEEEE-EEcCCHHHHHHHHhcC
Confidence 5777776 7888999999999999843 11 2355654444 3345678888887653
No 53
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=23.15 E-value=3.1e+02 Score=23.40 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhhhhhhHHhhccCchhHHHHHHHHHHHHHHHHHHhHhhccccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 018780 87 LEALKKTFKKLDHDVNVQEFLGTSSQTIEDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHLRM 166 (350)
Q Consensus 87 ~e~L~k~~~kL~~e~~iqe~~~~~~~~vE~L~~e~~kLk~qle~lq~rlr~~~ged~~LSveEL~qLE~qLe~sLk~IR~ 166 (350)
+.||+.+..+.+.+-+ .|.-|...|++++..|+...+-.. ---++|..--+.||.+|++=|+
T Consensus 6 l~fLQ~Ew~r~ErdR~-------------~WeiERaEmkarIa~LEGE~r~~e-----~l~~dL~rrIkMLE~aLkqER~ 67 (134)
T PF08232_consen 6 LHFLQTEWHRFERDRN-------------QWEIERAEMKARIAFLEGERRGQE-----NLKKDLKRRIKMLEYALKQERA 67 (134)
T ss_pred HHHHHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655554421 344445566666665543221000 0123444444555555555554
Q ss_pred HH
Q 018780 167 HK 168 (350)
Q Consensus 167 RK 168 (350)
+.
T Consensus 68 k~ 69 (134)
T PF08232_consen 68 KY 69 (134)
T ss_pred Hh
Confidence 43
No 54
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=22.98 E-value=7.2e+02 Score=24.33 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018780 143 KINSVEHLGQMENSLRDSLNHLRMHKENLG 172 (350)
Q Consensus 143 ~~LSveEL~qLE~qLe~sLk~IR~RK~qL~ 172 (350)
+..+.++|..+...|......|...+..+.
T Consensus 199 ~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~ 228 (312)
T smart00787 199 EDCDPTELDRAKEKLKKLLQEIMIKVKKLE 228 (312)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888877766654
No 55
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=22.96 E-value=5.6e+02 Score=29.68 Aligned_cols=43 Identities=21% Similarity=0.436 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhhccccCCCCCCCHHHHHHHHHHHHHHHHHH
Q 018780 115 EDLTNQARLLQSQLSEMHRRLRYWTNPDKINSVEHLGQMENSLRDSLNHL 164 (350)
Q Consensus 115 E~L~~e~~kLk~qle~lq~rlr~~~ged~~LSveEL~qLE~qLe~sLk~I 164 (350)
..|++|++.|+.+ +.|...|-+. ..+-+++.||++|...-.++
T Consensus 1134 nnlqqElklLRnE------K~Rmh~~~dk-VDFSDIEkLE~qLq~~~~kL 1176 (1439)
T PF12252_consen 1134 NNLQQELKLLRNE------KIRMHSGTDK-VDFSDIEKLEKQLQVIHTKL 1176 (1439)
T ss_pred HHHHHHHHHHHhH------HHhhccCCCc-ccHHHHHHHHHHHHHhhhhh
Confidence 4555556555543 3344555554 67888888888887654444
No 56
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=22.82 E-value=3.4e+02 Score=31.52 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 018780 148 EHLGQMENSLRDSLNHLRMHK 168 (350)
Q Consensus 148 eEL~qLE~qLe~sLk~IR~RK 168 (350)
+|+..+|+.|...+.++-..+
T Consensus 479 ~e~~~~ekel~~~~~~~n~~~ 499 (1293)
T KOG0996|consen 479 EEIEKLEKELMPLLKQVNEAR 499 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544444433
No 57
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.43 E-value=3.7e+02 Score=24.71 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 018780 118 TNQARLLQSQLS 129 (350)
Q Consensus 118 ~~e~~kLk~qle 129 (350)
+.|+..++.++.
T Consensus 99 e~el~~l~~~l~ 110 (206)
T PRK10884 99 ENQVKTLTDKLN 110 (206)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 58
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=22.27 E-value=4.6e+02 Score=28.29 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHhh
Q 018780 114 IEDLTNQARLLQSQLSEMHRRL 135 (350)
Q Consensus 114 vE~L~~e~~kLk~qle~lq~rl 135 (350)
++.+..++.+|+.+++.+.++.
T Consensus 445 ~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 445 LEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555554444
No 59
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.76 E-value=8.3e+02 Score=27.90 Aligned_cols=54 Identities=26% Similarity=0.401 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhHhhccc------cCCC-CCCCHHHHHHHHHH---HHHHHHHHHH
Q 018780 113 TIEDLTNQARLLQSQLSEMHRRLRYW------TNPD-KINSVEHLGQMENS---LRDSLNHLRM 166 (350)
Q Consensus 113 ~vE~L~~e~~kLk~qle~lq~rlr~~------~ged-~~LSveEL~qLE~q---Le~sLk~IR~ 166 (350)
+.+.|+.++..++++++++...+-.+ .|.+ ...|--++.+||++ |..+|-++|.
T Consensus 326 RaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 326 RAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 44667777777777777776555322 2444 35676677777765 6677766665
No 60
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=21.56 E-value=1.7e+02 Score=20.85 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=15.0
Q ss_pred CCCHHHHHH----HHHHHHHHHHHHHHH
Q 018780 144 INSVEHLGQ----MENSLRDSLNHLRMH 167 (350)
Q Consensus 144 ~LSveEL~q----LE~qLe~sLk~IR~R 167 (350)
.+|++||++ |...+|.-|..+|.|
T Consensus 7 ~ls~~eL~~rl~~LD~~ME~Eieelr~R 34 (49)
T PF11629_consen 7 FLSYEELQQRLASLDPEMEQEIEELRQR 34 (49)
T ss_dssp GS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 366777665 566666677777765
No 61
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=21.42 E-value=6.9e+02 Score=26.31 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=28.5
Q ss_pred ceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhhcC
Q 018780 7 LKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLT 75 (350)
Q Consensus 7 i~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~s 75 (350)
+-|+|.-+...|...|=--+.-=.+...+|.- ..+.|.+-......+ ....-.++|++|....
T Consensus 95 ~ii~R~i~~~grs~~~iNg~~v~~~~l~~l~~-----~li~i~gQ~~~~~l~-~~~~~~~lLD~~~~~~ 157 (563)
T TIGR00634 95 VILRRSISRDGRSRAYLNGKPVSASSLLEFTS-----ELLDLHGQHDQQLLF-RPDEQRQLLDTFAGAN 157 (563)
T ss_pred EEEEEEEcCCCceEEEECCEEccHHHHHHHhc-----CeEEEECchHHHHhc-CHHHHHHHHHHhcCch
Confidence 44555555555554442222222233334421 122233333333333 3456678888888743
No 62
>PF11184 DUF2969: Protein of unknown function (DUF2969); InterPro: IPR021351 This family of proteins with unknown function appears to be restricted to Lactobacillales.
Probab=21.25 E-value=51 Score=25.18 Aligned_cols=62 Identities=15% Similarity=0.264 Sum_probs=43.7
Q ss_pred CCc--ccceeEEecCCC----CCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCC-CCcHHHHHHHHh
Q 018780 2 MGR--VKLKIKKLENTN----GRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNG-KRSIEEVIAKFA 72 (350)
Q Consensus 2 MGR--~Ki~ikrIen~~----~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s-~ssme~ILeRY~ 72 (350)
|.| ++|+|.-+|.+. .-+|+--||..|-+... |-.. .++...+....+-+ ...++.||+.|.
T Consensus 1 MSKK~K~IeI~i~d~~~~~~~~~~l~Igkk~IG~I~e~-------d~~f--av~~~~~~~~~~Ks~deAve~iI~~yn 69 (71)
T PF11184_consen 1 MSKKNKKIEIEIKDTKVNGQPGYELFIGKKVIGEIEED-------DGRF--AVVKNDNVEFFVKSLDEAVEAIIREYN 69 (71)
T ss_pred CCCcccceEEEEEecccCCeEEEEEEECCEEEEEEEEc-------CCcE--EEEeCCCceEEEcCHHHHHHHHHHHhc
Confidence 555 589999998874 66777789998876543 4444 34556666666666 778888888874
No 63
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=21.11 E-value=38 Score=29.87 Aligned_cols=9 Identities=44% Similarity=0.759 Sum_probs=7.4
Q ss_pred CCCCccccc
Q 018780 302 QENPVDYHV 310 (350)
Q Consensus 302 ~~~~~~~~~ 310 (350)
-|+|+||=|
T Consensus 99 lG~PVD~Iv 107 (156)
T PF10107_consen 99 LGSPVDFIV 107 (156)
T ss_pred cCCCceEEE
Confidence 489999877
No 64
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=21.06 E-value=32 Score=24.83 Aligned_cols=37 Identities=24% Similarity=0.428 Sum_probs=31.9
Q ss_pred ccceeEEecCCCCCceeccccccchhhhhhhhh--hccC
Q 018780 5 VKLKIKKLENTNGRQATYAKRKHGIMKKANELS--ILCD 41 (350)
Q Consensus 5 ~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELS--vLCd 41 (350)
+|-.+--|..+....-|||--+.-.-.|.+|+| ||||
T Consensus 6 kkcnvisidgkkkksdtysypklvvenktyefssfvlcg 44 (66)
T PF13082_consen 6 KKCNVISIDGKKKKSDTYSYPKLVVENKTYEFSSFVLCG 44 (66)
T ss_pred ccccEEEeccccccCCcccCceEEEeCceEEEEEEEEEc
Confidence 566777888888999999999999999999998 6887
No 65
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=20.92 E-value=23 Score=27.44 Aligned_cols=38 Identities=26% Similarity=0.564 Sum_probs=28.6
Q ss_pred CCceeccccccchhhhh---------hhhhhccCcceeehhccCCCC
Q 018780 17 GRQATYAKRKHGIMKKA---------NELSILCDIDIILLMFSPTGK 54 (350)
Q Consensus 17 ~RqvTfsKRr~GL~KKA---------~ELSvLCdaeVaLIIFSp~GK 54 (350)
.+-+-||+-|++|..|. .|+.+=||.|.-|+..-|.|-
T Consensus 17 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 17 GRATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp SB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred CcEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 34455688888887765 489999999999999888886
No 66
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=20.18 E-value=8.1e+02 Score=25.67 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=9.0
Q ss_pred hhhhhccCcceee
Q 018780 34 NELSILCDIDIIL 46 (350)
Q Consensus 34 ~ELSvLCdaeVaL 46 (350)
.|+||-|.-+|.+
T Consensus 254 pe~sv~~qkev~~ 266 (527)
T PF15066_consen 254 PEMSVSHQKEVTV 266 (527)
T ss_pred cccccchhhhcch
Confidence 4778888767654
No 67
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=20.13 E-value=3.1e+02 Score=21.48 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018780 145 NSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECTT 183 (350)
Q Consensus 145 LSveEL~qLE~qLe~sLk~IR~RK~qL~~~ql~~Lq~ke 183 (350)
+|++=|.+||..+..++..| .|+.-.|++|+.+.
T Consensus 1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn 34 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKN 34 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 46778888888888888887 35556677777663
No 68
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.03 E-value=6.3e+02 Score=28.29 Aligned_cols=15 Identities=0% Similarity=0.080 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 018780 149 HLGQMENSLRDSLNH 163 (350)
Q Consensus 149 EL~qLE~qLe~sLk~ 163 (350)
++..+-.+.|..+..
T Consensus 473 ~ie~~~~q~e~~ise 487 (1118)
T KOG1029|consen 473 EIEEVTKQRELMISE 487 (1118)
T ss_pred HHHHhhhHHHHHHHH
Confidence 333344444443333
Done!