Query 018780
Match_columns 350
No_of_seqs 283 out of 1443
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:57:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 2.7E-36 9.2E-41 238.4 -2.1 88 3-91 1-88 (90)
2 1egw_A MADS box transcription 100.0 2E-35 6.9E-40 227.8 -1.3 73 3-76 1-73 (77)
3 1mnm_A Protein (MCM1 transcrip 100.0 1.9E-33 6.7E-38 225.7 -2.8 73 2-75 16-88 (100)
4 1hbx_A SRF, serum response fac 100.0 4.3E-33 1.5E-37 220.9 -4.5 71 2-73 10-80 (92)
5 1k6o_B SRF, serum response fac 100.0 1.3E-32 4.5E-37 222.2 -4.3 70 2-72 9-78 (103)
6 2oa5_A Hypothetical protein BQ 67.5 21 0.00073 28.4 7.4 59 112-170 8-69 (110)
7 2w6a_A ARF GTPase-activating p 47.6 54 0.0018 23.2 5.8 53 142-194 7-61 (63)
8 3na7_A HP0958; flagellar bioge 33.5 1.7E+02 0.0057 26.1 8.7 22 146-167 88-109 (256)
9 3nrf_A APAG protein; structura 32.8 5.3 0.00018 31.8 -1.4 40 12-56 21-60 (106)
10 3u1c_A Tropomyosin alpha-1 cha 30.5 1.8E+02 0.0063 22.3 9.9 40 148-187 58-99 (101)
11 2l5g_A GPS2 protein, G protein 28.5 72 0.0025 20.4 3.6 26 148-173 11-36 (38)
12 2dfs_A Myosin-5A; myosin-V, in 27.6 3.5E+02 0.012 29.6 11.3 8 173-180 1036-1043(1080)
13 3twe_A Alpha4H; unknown functi 27.1 79 0.0027 18.2 3.3 13 115-127 11-23 (27)
14 3ghg_A Fibrinogen alpha chain; 27.1 2.4E+02 0.0083 28.4 9.0 17 144-160 172-188 (562)
15 3oja_B Anopheles plasmodium-re 25.2 4.4E+02 0.015 25.9 10.9 24 148-171 537-560 (597)
16 3ghg_A Fibrinogen alpha chain; 24.2 2.5E+02 0.0084 28.4 8.4 16 58-73 45-60 (562)
17 2v66_B Nuclear distribution pr 21.8 2.9E+02 0.01 21.9 7.0 22 115-136 38-59 (111)
18 2jee_A YIIU; FTSZ, septum, coi 21.2 2E+02 0.0069 21.5 5.6 33 145-182 3-35 (81)
19 2xkj_E Topoisomerase IV; type 20.1 3.4E+02 0.012 28.6 9.0 43 28-74 578-621 (767)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=2.7e-36 Score=238.38 Aligned_cols=88 Identities=34% Similarity=0.635 Sum_probs=79.1
Q ss_pred CcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhhcChHHHHHh
Q 018780 3 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLTPQERAKR 82 (350)
Q Consensus 3 GR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~s~~er~k~ 82 (350)
||+||+|++|||+++|||||+|||+||||||+||||||||+||||||||+||+|+|++ ++|++||+||+++++..+.+.
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s-~~~~~il~rY~~~~~~~~~~~ 79 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYNEPHESRT 79 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHCCSCCCEEC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC-CCHHHHHHHHHhcCcccccCC
Confidence 8999999999999999999999999999999999999999999999999999999986 789999999999987655554
Q ss_pred hHHHHHHHH
Q 018780 83 KLESLEALK 91 (350)
Q Consensus 83 ~~~~~e~L~ 91 (350)
..+..++|+
T Consensus 80 ~~d~~e~~~ 88 (90)
T 3p57_A 80 NSDIVEALN 88 (90)
T ss_dssp HHHHHHHHH
T ss_pred hHhHHHHHh
Confidence 555444443
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=2e-35 Score=227.79 Aligned_cols=73 Identities=37% Similarity=0.690 Sum_probs=69.3
Q ss_pred CcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhhcCh
Q 018780 3 GRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLTP 76 (350)
Q Consensus 3 GR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~s~ 76 (350)
||+||+|++|||+++|||||+|||+||||||+|||||||||||||||||+||+|+|++ ++|++||+||+..++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s-~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCC-CCHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999999975 789999999999864
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.97 E-value=1.9e-33 Score=225.71 Aligned_cols=73 Identities=38% Similarity=0.527 Sum_probs=69.6
Q ss_pred CCcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhhcC
Q 018780 2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQLT 75 (350)
Q Consensus 2 MGR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~s 75 (350)
|||+||+|++|||+++|+|||+|||+||||||+||||||||+||||||||+||+|+|++ ++|+.||+||....
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s-ps~~~il~r~~G~~ 88 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST-PKFEPIVTQQEGRN 88 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC-TTTTHHHHSHHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecC-CCHHHHHHHhhCCc
Confidence 99999999999999999999999999999999999999999999999999999999975 68999999987643
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.97 E-value=4.3e-33 Score=220.91 Aligned_cols=71 Identities=39% Similarity=0.539 Sum_probs=67.7
Q ss_pred CCcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHhh
Q 018780 2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQ 73 (350)
Q Consensus 2 MGR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~ 73 (350)
|||+||+|++|||+++|+|||+|||+||||||+||||||||+||||||||+||+|+|++ ++|+.||++|..
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s-~~~~~~i~~~~G 80 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSETG 80 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEEC-GGGGGGTSSHHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecC-CCHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999975 889999986643
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.96 E-value=1.3e-32 Score=222.19 Aligned_cols=70 Identities=40% Similarity=0.552 Sum_probs=66.9
Q ss_pred CCcccceeEEecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCCCCCCCCcHHHHHHHHh
Q 018780 2 MGRVKLKIKKLENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPSLCNGKRSIEEVIAKFA 72 (350)
Q Consensus 2 MGR~Ki~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~~f~s~ssme~ILeRY~ 72 (350)
|||+||+|++|||+++|+|||+|||+||||||+||||||||+||||||||+||+|+|++ ++|+.||+++.
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s-~~~~~vi~~~~ 78 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT-RKLQPMITSET 78 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEEC-GGGGGGTSSHH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecC-ccHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999975 78999998643
No 6
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=67.50 E-value=21 Score=28.45 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHhhcc---ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 018780 112 QTIEDLTNQARLLQSQLSEMHRRLRY---WTNPDKINSVEHLGQMENSLRDSLNHLRMHKEN 170 (350)
Q Consensus 112 ~~vE~L~~e~~kLk~qle~lq~rlr~---~~ged~~LSveEL~qLE~qLe~sLk~IR~RK~q 170 (350)
..+|+|..++.+|+-++..|.+.++. -.+.+..|+-.+=+.+-.+.-.+|...-++|-.
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~KIe 69 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRKIE 69 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999874 334457899988888888777777766666533
No 7
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=47.63 E-value=54 Score=23.25 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhhhHHhhhcccccc
Q 018780 142 DKINSVEHLGQMENSLRDSLNHLRM--HKENLGKQELMSLECTTQFQNGICIPFR 194 (350)
Q Consensus 142 d~~LSveEL~qLE~qLe~sLk~IR~--RK~qL~~~ql~~Lq~keq~~~~~~~~l~ 194 (350)
|++.+++|.-++.+.|-.+=.+|.. +-++-+.++|.-||++-+-++..|..|+
T Consensus 7 Dgpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 7 DGAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 4678999999998888877766643 2223334667777777655554444443
No 8
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=33.45 E-value=1.7e+02 Score=26.15 Aligned_cols=22 Identities=9% Similarity=-0.067 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 018780 146 SVEHLGQMENSLRDSLNHLRMH 167 (350)
Q Consensus 146 SveEL~qLE~qLe~sLk~IR~R 167 (350)
+-+|+..|.+.++..-++|...
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~l 109 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQA 109 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444444333
No 9
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=32.76 E-value=5.3 Score=31.79 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=31.9
Q ss_pred ecCCCCCceeccccccchhhhhhhhhhccCcceeehhccCCCCCC
Q 018780 12 LENTNGRQATYAKRKHGIMKKANELSILCDIDIILLMFSPTGKPS 56 (350)
Q Consensus 12 Ien~~~RqvTfsKRr~GL~KKA~ELSvLCdaeVaLIIFSp~GKl~ 56 (350)
|.++.-...||-=.-.-|.+|.-+|+.+| ++.|+|.||-+
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef 60 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSF 60 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEE
Confidence 34455566777778889999999999887 99999999843
No 10
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=30.45 E-value=1.8e+02 Score=22.28 Aligned_cols=40 Identities=28% Similarity=0.304 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhhhHHhh
Q 018780 148 EHLGQMENSLRDSLNHLRMHKENLGK--QELMSLECTTQFQN 187 (350)
Q Consensus 148 eEL~qLE~qLe~sLk~IR~RK~qL~~--~ql~~Lq~keq~~~ 187 (350)
++|..++..|..+...+.......-. ..+..|.|+.|++.
T Consensus 58 ~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 58 DSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666666666666655554322221 36778888877654
No 11
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.52 E-value=72 Score=20.44 Aligned_cols=26 Identities=23% Similarity=0.118 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018780 148 EHLGQMENSLRDSLNHLRMHKENLGK 173 (350)
Q Consensus 148 eEL~qLE~qLe~sLk~IR~RK~qL~~ 173 (350)
+|...=-..|+..|..++.-|.||+.
T Consensus 11 eEtkeQi~~l~~kl~~LkeEKHQLFl 36 (38)
T 2l5g_A 11 EETKEQILKLEEKLLALQEEKHQLFL 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444555555665543
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=27.63 E-value=3.5e+02 Score=29.65 Aligned_cols=8 Identities=38% Similarity=0.327 Sum_probs=3.4
Q ss_pred HHHHhhhh
Q 018780 173 KQELMSLE 180 (350)
Q Consensus 173 ~~ql~~Lq 180 (350)
.+|+++|.
T Consensus 1036 ~qq~~~l~ 1043 (1080)
T 2dfs_A 1036 KTEKEELN 1043 (1080)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444443
No 13
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=27.11 E-value=79 Score=18.23 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 018780 115 EDLTNQARLLQSQ 127 (350)
Q Consensus 115 E~L~~e~~kLk~q 127 (350)
|+|+..+++|+++
T Consensus 11 edlqerlrklrkk 23 (27)
T 3twe_A 11 EDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 14
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.07 E-value=2.4e+02 Score=28.40 Aligned_cols=17 Identities=6% Similarity=0.102 Sum_probs=12.2
Q ss_pred CCCHHHHHHHHHHHHHH
Q 018780 144 INSVEHLGQMENSLRDS 160 (350)
Q Consensus 144 ~LSveEL~qLE~qLe~s 160 (350)
.++++....+++||+..
T Consensus 172 ~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 172 EVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHHHHHHHH
Confidence 36677777777777764
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.19 E-value=4.4e+02 Score=25.85 Aligned_cols=24 Identities=8% Similarity=0.046 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 018780 148 EHLGQMENSLRDSLNHLRMHKENL 171 (350)
Q Consensus 148 eEL~qLE~qLe~sLk~IR~RK~qL 171 (350)
++++.++++.+.--++++..|.++
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhHH
Confidence 455555555555555555555444
No 16
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=24.15 E-value=2.5e+02 Score=28.36 Aligned_cols=16 Identities=19% Similarity=0.410 Sum_probs=9.8
Q ss_pred CCCCCcHHHHHHHHhh
Q 018780 58 CNGKRSIEEVIAKFAQ 73 (350)
Q Consensus 58 f~s~ssme~ILeRY~~ 73 (350)
||+.-.|..+|++..+
T Consensus 45 CPSGCrLQglLdkqEr 60 (562)
T 3ghg_A 45 CPSGCRMKGLIDEVNQ 60 (562)
T ss_dssp EECHHHHHHHHHHHHH
T ss_pred CCcccchhhhHHhhcC
Confidence 3444468888877543
No 17
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=21.76 E-value=2.9e+02 Score=21.85 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhc
Q 018780 115 EDLTNQARLLQSQLSEMHRRLR 136 (350)
Q Consensus 115 E~L~~e~~kLk~qle~lq~rlr 136 (350)
-.|+.++..|+...+.++.++|
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iR 59 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVR 59 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444444444
No 18
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.18 E-value=2e+02 Score=21.52 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018780 145 NSVEHLGQMENSLRDSLNHLRMHKENLGKQELMSLECT 182 (350)
Q Consensus 145 LSveEL~qLE~qLe~sLk~IR~RK~qL~~~ql~~Lq~k 182 (350)
+|++=|.+||..+..++..|- ++.-.+++|+.+
T Consensus 3 MS~ElleqLE~KIq~avdtI~-----lLqmEieELKek 35 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEK 35 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 678888999999999988773 444555666555
No 19
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=20.06 E-value=3.4e+02 Score=28.65 Aligned_cols=43 Identities=19% Similarity=0.371 Sum_probs=27.7
Q ss_pred chhhhhhhhhhcc-CcceeehhccCCCCCCCCCCCCcHHHHHHHHhhc
Q 018780 28 GIMKKANELSILC-DIDIILLMFSPTGKPSLCNGKRSIEEVIAKFAQL 74 (350)
Q Consensus 28 GL~KKA~ELSvLC-daeVaLIIFSp~GKl~~f~s~ssme~ILeRY~~~ 74 (350)
+++++-+-.+-|- -.-+-+++|..+|+|. + -++++||+.|-..
T Consensus 578 ~vl~~L~k~T~Lq~sf~~Nm~~l~~~g~p~-~---~~l~~iL~~f~~~ 621 (767)
T 2xkj_E 578 AVMSHLFATTDLESSYRVNLNMIGEDGRPQ-V---KSIRRILLEWIEI 621 (767)
T ss_dssp HHHHHHHHHSTTEEEEEEECEEECTTSCEE-E---CCHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhhhcccceEEEccCCeeE-E---cCHHHHHHHHHHH
Confidence 4555544433332 1234567888899985 4 3699999998765
Done!