BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018781
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 347 bits (889), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 177/323 (54%), Positives = 226/323 (69%), Gaps = 2/323 (0%)
Query: 27 DFSIVGYSPEHLTSMDKLIELFESWMSKHGKTYKCIEEKLHRFEIFKENLKHIDQRNKEV 86
DFSIVGYS + LTS ++LI+LF SWM H K Y+ ++EKL+RFEIFK+NL +ID+ NK+
Sbjct: 1 DFSIVGYSQDDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKN 60
Query: 87 TSYWLGLNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVKALPKSVDWRKKGAVT 146
SYWLGLNEFAD+S++EF KY+G + EF D+ LP++VDWRKKGAVT
Sbjct: 61 NSYWLGLNEFADLSNDEFNEKYVGSLIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVT 120
Query: 147 PVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNNGCNGGLMDYAFK 206
PV++QGSCGSCWAFS VA VEGIN+I +G L LSEQEL+DC+ ++GC GG YA +
Sbjct: 121 PVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR-SHGCKGGYPPYALE 179
Query: 207 YIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQSLLKALAHQPVSV 266
Y VA G+H YPY ++GTC K+ +V SG V N+E +LL A+A QPVSV
Sbjct: 180 Y-VAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSV 238
Query: 267 AIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIR 326
+E+ G FQ Y GG+F GPCG ++D V AVGYGKS G YI++KNSWG WGE+GYIR
Sbjct: 239 VVESKGRPFQLYKGGIFEGPCGTKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIR 298
Query: 327 MKRNTGKPEGLCGINKMASIPLK 349
+KR G G+CG+ K + P K
Sbjct: 299 IKRAPGNSPGVCGLYKSSYYPTK 321
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 335 bits (859), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 172/329 (52%), Positives = 223/329 (67%), Gaps = 17/329 (5%)
Query: 27 DFSIVGYSPEHLTSMDKLIELFESWMSKHGKTYKCIEEKLHRFEIFKENLKHIDQRNKEV 86
DFSIVGYS LTS ++LI+LFESWM KH K YK I+EK++RFEIFK+NLK+ID+ NK+
Sbjct: 45 DFSIVGYSQNDLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKN 104
Query: 87 TSYWLGLNEFADMSHEEFKNKYLG-LKPQFPTRRQPSAEFSYRDV-----KALPKSVDWR 140
SYWLGLN FADMS++EFK KY G + + T E SY +V +P+ VDWR
Sbjct: 105 NSYWLGLNVFADMSNDEFKEKYTGSIAGNYTT-----TELSYEEVLNDGDVNIPEYVDWR 159
Query: 141 KKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNNGCNGGL 200
+KGAVTPVKNQGSCGS WAFS V+ +E I +I +GNL SEQEL+DCD + GCNGG
Sbjct: 160 QKGAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRR-SYGCNGGY 218
Query: 201 MDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQSLLKALA 260
A + +VA G+H YPY + C +++ G + V +E +LL ++A
Sbjct: 219 PWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIA 277
Query: 261 HQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVKNSWGPKWG 320
+QPVSV +EA+G DFQ Y GG+F GPCG ++DH VAAVGY G +YI+++NSWG WG
Sbjct: 278 NQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIRNSWGTGWG 333
Query: 321 ERGYIRMKRNTGKPEGLCGINKMASIPLK 349
E GYIR+KR TG G+CG+ + P+K
Sbjct: 334 ENGYIRIKRGTGNSYGVCGLYTSSFYPVK 362
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 304 bits (779), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 145/219 (66%), Positives = 171/219 (78%), Gaps = 1/219 (0%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
+P SVDWRKKGAVT VK+QG CGSCWAFST+ AVEGINQI + L SLSEQEL+DCDT
Sbjct: 2 VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
N GCNGGLMDYAF++I GG+ E +YPY +GTC+ KE V+I G+++VPENDE
Sbjct: 62 NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDE 121
Query: 253 QSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKS-KGSDYIIV 311
+LLKA+A+QPVSVAI+A G+DFQFYS GVFTG CG ELDHGVA VGYG + G+ Y V
Sbjct: 122 NALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTV 181
Query: 312 KNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLKK 350
KNSWGP+WGE+GYIRM+R EGLCGI AS P+KK
Sbjct: 182 KNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKK 220
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 280 bits (717), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 140/224 (62%), Positives = 165/224 (73%), Gaps = 4/224 (1%)
Query: 130 VKALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCD 189
V LP SVDWR+KGAVT VK+QG CGSCWAFSTV +VEGIN I +G+L SLSEQELIDCD
Sbjct: 1 VSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD 60
Query: 190 TSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEME---VVTISGYQD 246
T+ N+GC GGLMD AF+YI +GGL E YPY GTC + VV I G+QD
Sbjct: 61 TADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQD 120
Query: 247 VPENDEQSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSK-G 305
VP N E+ L +A+A+QPVSVA+EASG F FYS GVFTG CG ELDHGVA VGYG ++ G
Sbjct: 121 VPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGECGTELDHGVAVVGYGVAEDG 180
Query: 306 SDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
Y VKNSWGP WGE+GYIR+++++G GLCGI AS P+K
Sbjct: 181 KAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVK 224
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 269 bits (688), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 126/218 (57%), Positives = 161/218 (73%), Gaps = 2/218 (0%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
LP S+DWR+ GAV PVKNQG CGSCWAFSTVAAVEGINQIV+G+L SLSEQ+L+DC T+
Sbjct: 3 LPDSIDWRENGAVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTA- 61
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
N+GC GG M+ AF++IV +GG++ EE YPY ++G C + VV+I Y++VP ++E
Sbjct: 62 NHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGIC-NSTVNAPVVSIDSYENVPSHNE 120
Query: 253 QSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVK 312
QSL KA+A+QPVSV ++A+G DFQ Y G+FTG C +H + VGYG D+ IVK
Sbjct: 121 QSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGSCNISANHALTVVGYGTENDKDFWIVK 180
Query: 313 NSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLKK 350
NSWG WGE GYIR +RN P+G CGI + AS P+KK
Sbjct: 181 NSWGKNWGESGYIRAERNIENPDGKCGITRFASYPVKK 218
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 260 bits (665), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 121/217 (55%), Positives = 155/217 (71%), Gaps = 3/217 (1%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
LP VDWR KGAV +KNQ CGSCWAFS VAAVE IN+I +G L SLSEQEL+DCDT+
Sbjct: 1 LPSFVDWRSKGAVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTA- 59
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
++GCNGG M+ AF+YI+ +GG+ +++YPY +G+C K + VV+I+G+Q V N+E
Sbjct: 60 SHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSC--KPYRLRVVSINGFQRVTRNNE 117
Query: 253 QSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVK 312
+L A+A QPVSV +EA+G FQ YS G+FTGPCG +HGV VGYG G +Y IV+
Sbjct: 118 SALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIVR 177
Query: 313 NSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
NSWG WG +GYI M+RN GLCGI ++ S P K
Sbjct: 178 NSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTK 214
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 259 bits (662), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 123/218 (56%), Positives = 158/218 (72%), Gaps = 2/218 (0%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
LP VDWR GAV +K+QG CGSCWAFST+AAVEGIN+I +G+L SLSEQEL+DC +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 193 NN-GCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPEND 251
N GC+GG M F++I+ +GG++ E +YPY EEG C ++ + V+I Y++VP N+
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 252 EQSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIV 311
E +L A+A+QPVSVA+EA+G +FQ YS G+FTGPCG +DH V VGYG G DY IV
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIV 180
Query: 312 KNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
KNSWG WGE GY+R++RN G G CGI K AS P+K
Sbjct: 181 KNSWGTTWGEEGYMRIQRNVGGV-GQCGIAKKASYPVK 217
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 258 bits (659), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 122/216 (56%), Positives = 153/216 (70%), Gaps = 2/216 (0%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P+S+DWR KGAVTPVKNQG+CGS WAFST+A VEGIN+IV+GNL LSEQEL+DCD +
Sbjct: 2 PQSIDWRAKGAVTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCD-KHS 60
Query: 194 NGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQ 253
GC GG + +Y VA+ G+H + YPY ++ C + V I+GY+ VP N E
Sbjct: 61 YGCKGGYQTTSLQY-VANNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXET 119
Query: 254 SLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVKN 313
S L ALA+QP+SV +EA G FQ Y GVF GPCG +LDH V AVGYG S G +YII+KN
Sbjct: 120 SFLGALANQPLSVLVEAGGKPFQLYKSGVFDGPCGTKLDHAVTAVGYGTSDGKNYIIIKN 179
Query: 314 SWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
SWGP WGE+GY+R+KR +G +G CG+ K + P K
Sbjct: 180 SWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFK 215
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 255 bits (652), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 122/218 (55%), Positives = 157/218 (72%), Gaps = 2/218 (0%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
LP VDWR GAV +K+QG CGS WAFST+AAVEGIN+I +G+L SLSEQEL+DC +
Sbjct: 1 LPDYVDWRSSGAVVDIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQ 60
Query: 193 NN-GCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPEND 251
N GC+GG M F++I+ +GG++ E +YPY EEG C ++ + V+I Y++VP N+
Sbjct: 61 NTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEGQCNLDLQQEKYVSIDTYENVPYNN 120
Query: 252 EQSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIV 311
E +L A+A+QPVSVA+EA+G +FQ YS G+FTGPCG +DH V VGYG G DY IV
Sbjct: 121 EWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIV 180
Query: 312 KNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
KNSWG WGE GY+R++RN G G CGI K AS P+K
Sbjct: 181 KNSWGTTWGEEGYMRIQRNVGGV-GQCGIAKKASYPVK 217
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 255 bits (651), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 117/216 (54%), Positives = 161/216 (74%), Gaps = 6/216 (2%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P+S+DWR+KGAVTPVKNQ CGSCWAFSTVA +EGIN+I++G L SLSEQEL+DC+ +
Sbjct: 2 PESIDWREKGAVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERR-S 60
Query: 194 NGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQ 253
+GC+GG + +Y+V +G +H E +YPY ++G C K ++ V I+GY+ VP NDE
Sbjct: 61 HGCDGGYQTTSLQYVVDNG-VHTEREYPYEKKQGRCRAKDKKGPKVYITGYKYVPANDEI 119
Query: 254 SLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVKN 313
SL++A+A+QPVSV ++ G FQFY GG++ GPCG DH V AVGYGK+ Y+++KN
Sbjct: 120 SLIQAIANQPVSVVTDSRGRGFQFYKGGIYEGPCGTNTDHAVTAVGYGKT----YLLLKN 175
Query: 314 SWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
SWGP WGE+GYIR+KR +G+ +G CG+ + P+K
Sbjct: 176 SWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPIK 211
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 246 bits (627), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 124/217 (57%), Positives = 153/217 (70%), Gaps = 10/217 (4%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
LP+ +DWRKKGAVTPVKNQG CGSCWAFSTV+ VE INQI +GNL SLSEQ+L+DC+
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNKK- 59
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
N+GC GG YA++YI+ +GG+ E +YPY +G C K +VV I GY+ VP +E
Sbjct: 60 NHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAVQGPCRAAK---KVVRIDGYKGVPHCNE 116
Query: 253 QSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVK 312
+L KA+A QP VAI+AS FQ Y G+F+GPCG +L+HGV VGY K DY IV+
Sbjct: 117 NALKKAVASQPSVVAIDASSKQFQHYKSGIFSGPCGTKLNHGVVIVGYWK----DYWIVR 172
Query: 313 NSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
NSWG WGE+GYIRMKR G GLCGI ++ P K
Sbjct: 173 NSWGRYWGEQGYIRMKRVGG--CGLCGIARLPYYPTK 207
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 244 bits (622), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 117/218 (53%), Positives = 150/218 (68%), Gaps = 2/218 (0%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
LP VDWR GAV +K+QG CG CWAFS +A VEGIN+IV+G L SLSEQELIDC +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQ 60
Query: 193 NN-GCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPEND 251
N GCNGG + F++I+ +GG++ EE+YPY ++G C + + VTI Y++VP N+
Sbjct: 61 NTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNN 120
Query: 252 EQSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIV 311
E +L A+ +QPVSVA++A+G F+ YS G+FTGPCG +DH V VGYG G DY IV
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDYWIV 180
Query: 312 KNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
KNSW WGE GY+R+ RN G G CGI M S P+K
Sbjct: 181 KNSWDTTWGEEGYMRILRNVGGA-GTCGIATMPSYPVK 217
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/217 (56%), Positives = 150/217 (69%), Gaps = 10/217 (4%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
LP+ VDWR KGAV P+KNQG CGSCWAFSTV VE INQI +GNL SLSEQ+L+DC
Sbjct: 1 LPEHVDWRAKGAVIPLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSKK- 59
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
N+GC GG D A++YI+A+GG+ E +YPY +G C K +VV I G + VP+ +E
Sbjct: 60 NHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQGPCRAAK---KVVRIDGCKGVPQCNE 116
Query: 253 QSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVK 312
+L A+A QP VAI+AS FQ Y GG+FTGPCG +L+HGV VGYGK DY IV+
Sbjct: 117 NALKNAVASQPSVVAIDASSKQFQHYKGGIFTGPCGTKLNHGVVIVGYGK----DYWIVR 172
Query: 313 NSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
NSWG WGE+GY RMKR G GLCGI ++ P K
Sbjct: 173 NSWGRHWGEQGYTRMKRVGGC--GLCGIARLPFYPTK 207
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 241 bits (614), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 121/217 (55%), Positives = 155/217 (71%), Gaps = 10/217 (4%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
LP+ +DWRKKGAVTPVKNQGSCGSCWAFSTV+ VE INQI +GNL SLSEQEL+DCD
Sbjct: 1 LPEQIDWRKKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKK- 59
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
N+GC GG +A++YI+ +GG+ + +YPY +G C+ +VV+I GY VP +E
Sbjct: 60 NHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAAS---KVVSIDGYNGVPFCNE 116
Query: 253 QSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVK 312
+L +A+A QP +VAI+AS FQ YS G+F+GPCG +L+HGV VGY ++Y IV+
Sbjct: 117 XALKQAVAVQPSTVAIDASSAQFQQYSSGIFSGPCGTKLNHGVTIVGY----QANYWIVR 172
Query: 313 NSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
NSWG WGE+GYIRM R G GLCGI ++ P K
Sbjct: 173 NSWGRYWGEKGYIRMLRVGGC--GLCGIARLPYYPTK 207
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 239 bits (610), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 150/218 (68%), Gaps = 2/218 (0%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
LP VDWR GAV +K+QG CG WAFS +A VEGIN+I SG+L SLSEQELIDC +
Sbjct: 1 LPSYVDWRSAGAVVDIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGRTQ 60
Query: 193 NN-GCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPEND 251
N GC+GG + F++I+ GG++ EE+YPY ++G C+ ++ + VTI Y++VP N+
Sbjct: 61 NTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN 120
Query: 252 EQSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIV 311
E +L A+ +QPVSVA++A+G F+ Y+ G+FTGPCG +DH + VGYG G DY IV
Sbjct: 121 EWALQTAVTYQPVSVALDAAGDAFKQYASGIFTGPCGTAVDHAIVIVGYGTEGGVDYWIV 180
Query: 312 KNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
KNSW WGE GY+R+ RN G G CGI M S P+K
Sbjct: 181 KNSWDTTWGEEGYMRILRNVGGA-GTCGIATMPSYPVK 217
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 237 bits (605), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 122/217 (56%), Positives = 153/217 (70%), Gaps = 2/217 (0%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
LP++VDWRKKGAVTPV++QGSCGSCWAFS VA VEGIN+I +G L LSEQEL+DC+
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
++GC GG YA +Y VA G+H YPY ++GTC K+ +V SG V N+E
Sbjct: 60 SHGCKGGYPPYALEY-VAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNE 118
Query: 253 QSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVK 312
+LL A+A QPVSV +E+ G FQ Y GG+F GPCG ++DH V AVGYGKS G YI++K
Sbjct: 119 GNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVDHAVTAVGYGKSGGKGYILIK 178
Query: 313 NSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
NSWG WGE+GYIR+KR G G+CG+ K + P K
Sbjct: 179 NSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 215
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 121/217 (55%), Positives = 153/217 (70%), Gaps = 2/217 (0%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
LP++VDWRKKGAVTPV++QGSCGSCWAFS VA VEGIN+I +G L LSEQEL+DC+
Sbjct: 1 LPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR- 59
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
++GC GG YA +Y VA G+H YPY ++GTC K+ +V SG V N+E
Sbjct: 60 SHGCKGGYPPYALEY-VAKNGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNE 118
Query: 253 QSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVK 312
+LL A+A QPVSV +E+ G FQ Y GG+F GPCG +++H V AVGYGKS G YI++K
Sbjct: 119 GNLLNAIAKQPVSVVVESKGRPFQLYKGGIFEGPCGTKVEHAVTAVGYGKSGGKGYILIK 178
Query: 313 NSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
NSWG WGE+GYIR+KR G G+CG+ K + P K
Sbjct: 179 NSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK 215
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 233 bits (595), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 120/217 (55%), Positives = 152/217 (70%), Gaps = 2/217 (0%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
LP+SVDWR KGAVTPVK+QG C SCWAFSTVA VEGIN+I +GNL LSEQEL+DCD
Sbjct: 1 LPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDLQ- 59
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
+ GCN G + +Y VA G+H YPY+ ++ TC + V +G V N+E
Sbjct: 60 SYGCNRGYQSTSLQY-VAQNGIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNE 118
Query: 253 QSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVK 312
SLL A+AHQPVSV +E++G DFQ Y GG+F G CG ++DH V AVGYGKS G YI++K
Sbjct: 119 GSLLNAIAHQPVSVVVESAGRDFQNYKGGIFEGSCGTKVDHAVTAVGYGKSGGKGYILIK 178
Query: 313 NSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
NSWGP WGE GYIR++R +G G+CG+ + + P+K
Sbjct: 179 NSWGPGWGENGYIRIRRASGNSPGVCGVYRSSYYPIK 215
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 231 bits (588), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 134/307 (43%), Positives = 181/307 (58%), Gaps = 12/307 (3%)
Query: 48 FESWMSKHGKTYKCIEEKLHRFEIFKENLKHIDQRNKE----VTSYWLGLNEFADMSHEE 103
+E W H K Y +++ R I+++NLK+I N E V +Y L +N DM+ EE
Sbjct: 11 WELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEE 70
Query: 104 FKNKYLGLKPQFPTRRQPSAEFSYRDVKALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTV 163
K GLK R + P SVD+RKKG VTPVKNQG CGSCWAFS+V
Sbjct: 71 VVQKMTGLKVPLSHSRSNDTLYIPEWEGRAPDSVDYRKKGYVTPVKNQGQCGSCWAFSSV 130
Query: 164 AAVEGINQIVSGNLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYL 223
A+EG + +G L +LS Q L+DC S N+GC GG M AF+Y+ + G+ E+ YPY+
Sbjct: 131 GALEGQLKKKTGKLLNLSPQNLVDC-VSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYV 189
Query: 224 MEEGTCEDKKEEMEVVTISGYQDVPENDEQSLLKALAHQ-PVSVAIEASGTDFQFYSGGV 282
+E +C + GY+++PE +E++L +A+A PVSVAI+AS T FQFYS GV
Sbjct: 190 GQEESCM-YNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 248
Query: 283 FTG-PCGAE-LDHGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGI 340
+ C ++ L+H V AVGYG KG+ + I+KNSWG WG +GYI M RN CGI
Sbjct: 249 YYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNA---CGI 305
Query: 341 NKMASIP 347
+AS P
Sbjct: 306 ANLASFP 312
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 117/217 (53%), Positives = 151/217 (69%), Gaps = 6/217 (2%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
+P S+DWR+KGAVTPV+NQG CGSCW FS+VAAVEGIN+IV+G L SLSEQEL+DC+
Sbjct: 1 IPTSIDWRQKGAVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERR- 59
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
+ GC GG YA +Y VA+ G+H + YPY + C + + V G VP N+E
Sbjct: 60 SYGCRGGFPLYALQY-VANSGIHLRQYYPYEGVQRQCRASQAKGPKVKTDGVGRVPRNNE 118
Query: 253 QSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVK 312
Q+L++ +A QPVS+ +EA G FQ Y GG+F GPCG +DH VAAVGY G+DYI++K
Sbjct: 119 QALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAGPCGTSIDHAVAAVGY----GNDYILIK 174
Query: 313 NSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
NSWG WGE GYIR+KR +G P+G CG+ + P K
Sbjct: 175 NSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTK 211
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 112/217 (51%), Positives = 146/217 (67%), Gaps = 6/217 (2%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
+P+ VDWR+KGAVTPVKNQGSCGSCWAFS V +EGI +I +GNL SEQEL+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
+ GCNGG A + +VA G+H YPY + C +++ G + V +E
Sbjct: 60 SYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 253 QSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVK 312
+LL ++A+QPVSV +EA+G DFQ Y GG+F GPCG ++DH VAAVGY G +YI++K
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIK 174
Query: 313 NSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
NSWG WGE GYIR+KR TG G+CG+ + P+K
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 224 bits (572), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 110/217 (50%), Positives = 146/217 (67%), Gaps = 6/217 (2%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
+P+ VDWR+KGAVTPVKNQGSCGSCWAFS V +EGI +I +GNL SEQEL+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
+ GCNGG A + +VA G+H YPY + C +++ G + V ++
Sbjct: 60 SYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 253 QSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVK 312
+LL ++A+QPVSV ++A+G DFQ Y GG+F GPCG ++DH VAAVGY G +YI++K
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIK 174
Query: 313 NSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
NSWG WGE GYIR+KR TG G+CG+ + P+K
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 223 bits (569), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 145/216 (67%), Gaps = 6/216 (2%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P+ VDWR+KGAVTPVKNQGSCGSCWAFS V +EGI +I +GNL SEQEL+DCD +
Sbjct: 2 PEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR-S 60
Query: 194 NGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQ 253
GCNGG A + +VA G+H YPY + C +++ G + V ++
Sbjct: 61 YGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQG 119
Query: 254 SLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVKN 313
+LL ++A+QPVSV ++A+G DFQ Y GG+F GPCG ++DH VAAVGY G +YI++KN
Sbjct: 120 ALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIKN 175
Query: 314 SWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
SWG WGE GYIR+KR TG G+CG+ + P+K
Sbjct: 176 SWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 223 bits (567), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/309 (42%), Positives = 185/309 (59%), Gaps = 21/309 (6%)
Query: 51 WMSKHGKTYKCIEEKLHRFEIFKENLKHIDQRNKEVT----SYWLGLNEFADMSHEEFKN 106
W + H + Y EE R ++++N+K I+ N+E S+ + +N F DM+ EEF+
Sbjct: 11 WKAMHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQ 69
Query: 107 KYLGLKPQFPTRRQPSAEFSYRDVKALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAV 166
GL+ + P + + E + + P+SVDWR+KG VTPVKNQG CGS WAFS A+
Sbjct: 70 VMNGLQNRKPRKGKVFQEPLFYEA---PRSVDWREKGYVTPVKNQGQCGSSWAFSATGAL 126
Query: 167 EGINQIVSGNLTSLSEQELIDCD-TSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLME 225
EG +G L SLSEQ L+DC N GCNGGLMDYAF+Y+ +GGL EE YPY
Sbjct: 127 EGQMFRKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEAT 186
Query: 226 EGTCEDKKEEMEVVTISGYQDVPENDEQSLLKALAH-QPVSVAIEASGTDFQFYSGGVFT 284
E +C+ + V +G+ D+P+ E++L+KA+A P+SVAI+A F FY G++
Sbjct: 187 EESCK-YNPKYSVANDAGFVDIPKQ-EKALMKAVATVGPISVAIDAGHESFLFYKEGIYF 244
Query: 285 GP-CGAE-LDHGVAAVGYG----KSKGSDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLC 338
P C +E +DHGV VGYG +S G+ Y +VKNSWG +WG GY++M ++ C
Sbjct: 245 EPDCSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDR---RNHC 301
Query: 339 GINKMASIP 347
GI AS P
Sbjct: 302 GIASAASYP 310
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 222 bits (566), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 145/217 (66%), Gaps = 6/217 (2%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
+P+ VDWR+KGAVTPVKNQGSCGS WAFS V +EGI +I +GNL SEQEL+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
+ GCNGG A + +VA G+H YPY + C +++ G + V +E
Sbjct: 60 SYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 253 QSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVK 312
+LL ++A+QPVSV +EA+G DFQ Y GG+F GPCG ++DH VAAVGY G +YI++K
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIK 174
Query: 313 NSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
NSWG WGE GYIR+KR TG G+CG+ + P+K
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 111/217 (51%), Positives = 145/217 (66%), Gaps = 6/217 (2%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
+P+ VDWR+KGAVTPVKNQGSCGS WAFS V +EGI +I +GNL SEQEL+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 59
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
+ GCNGG A + +VA G+H YPY + C +++ G + V +E
Sbjct: 60 SYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNE 118
Query: 253 QSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVK 312
+LL ++A+QPVSV +EA+G DFQ Y GG+F GPCG ++DH VAAVGY G +YI++K
Sbjct: 119 GALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIK 174
Query: 313 NSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
NSWG WGE GYIR+KR TG G+CG+ + P+K
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 220 bits (561), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 109/217 (50%), Positives = 145/217 (66%), Gaps = 6/217 (2%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
+P+ VDWR+KGAVTPVKNQGSCGS WAFS V +EGI +I +GNL SEQEL+DCD
Sbjct: 1 IPEYVDWRQKGAVTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR- 59
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
+ GCNGG A + +VA G+H YPY + C +++ G + V ++
Sbjct: 60 SYGCNGGYPWSALQ-LVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQ 118
Query: 253 QSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYIIVK 312
+LL ++A+QPVSV ++A+G DFQ Y GG+F GPCG ++DH VAAVGY G +YI++K
Sbjct: 119 GALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHAVAAVGY----GPNYILIK 174
Query: 313 NSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLK 349
NSWG WGE GYIR+KR TG G+CG+ + P+K
Sbjct: 175 NSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 219 bits (559), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 187/322 (58%), Gaps = 21/322 (6%)
Query: 38 LTSMDKLIELFESWMSKHGKTYKCIEEKLHRFEIFKENLKHIDQRNKEVT----SYWLGL 93
LT L + W + H + Y EE R ++++N+K I+ N+E S+ + +
Sbjct: 2 LTFDHSLEAQWTKWKAMHNRLYGMNEEGWRR-AVWEKNMKMIELHNQEYREGKHSFTMAM 60
Query: 94 NEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVKALPKSVDWRKKGAVTPVKNQGS 153
N F DM+ EEF+ G + + P + + E + + P+SVDWR+KG VTPVKNQG
Sbjct: 61 NAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEA---PRSVDWREKGYVTPVKNQGQ 117
Query: 154 CGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCD-TSFNNGCNGGLMDYAFKYIVASG 212
CGS WAFS A+EG +G L SLSEQ L+DC N GCNGGLMDYAF+Y+ +G
Sbjct: 118 CGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNG 177
Query: 213 GLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQSLLKALAH-QPVSVAIEAS 271
GL EE YPY E +C+ + V +G+ D+P+ E++L+KA+A P+SVAI+A
Sbjct: 178 GLDSEESYPYEATEESCK-YNPKYSVANDAGFVDIPKQ-EKALMKAVATVGPISVAIDAG 235
Query: 272 GTDFQFYSGGVFTGP-CGAE-LDHGVAAVGYG----KSKGSDYIIVKNSWGPKWGERGYI 325
F FY G++ P C +E +DHGV VGYG +S + Y +VKNSWG +WG GY+
Sbjct: 236 HESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYV 295
Query: 326 RMKRNTGKPEGLCGINKMASIP 347
+M ++ CGI AS P
Sbjct: 296 KMAKDR---RNHCGIASAASYP 314
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 218 bits (554), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 139/305 (45%), Positives = 172/305 (56%), Gaps = 23/305 (7%)
Query: 55 HGKTYKCIEEKLHRFEIFKENLKHIDQRN----KEVTSYWLGLNEFADMSHEEF---KNK 107
H K+Y E++ R IFK+N+ I + N K +Y +N+F DMS EEF N+
Sbjct: 34 HKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEFLAYVNR 93
Query: 108 YLGLKPQFPTR-RQPSAEFSYRDVKALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAV 166
KP+ P R P K L SVDWR AV+ VK+QG CGS W+FST AV
Sbjct: 94 GKAQKPKHPENLRMPYVS----SKKPLAASVDWRSN-AVSEVKDQGQCGSSWSFSTTGAV 148
Query: 167 EGINQIVSGNLTSLSEQELIDCDTSFNN-GCNGGLMDYAFKYIVASGGLHKEEDYPYLME 225
EG + G LTSLSEQ LIDC +S+ N GC+GG MD AF YI G+ E YPY +
Sbjct: 149 EGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGWMDSAFSYI-HDYGIMSESAYPYEAQ 207
Query: 226 EGTCEDKKEEMEVVTISGYQDVPENDEQSLLKALAHQ-PVSVAIEASGTDFQFYSGGVF- 283
C + V T+SGY D+P DE SL A+ PV+VAI+A+ + QFYSGG+F
Sbjct: 208 GDYCRFDSSQ-SVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDAT-DELQFYSGGLFY 265
Query: 284 TGPCG-AELDHGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINK 342
C ++L+HGV VGYG G DY I+KNSWG WGE GY R RN G CGI
Sbjct: 266 DQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNN---CGIAT 322
Query: 343 MASIP 347
AS P
Sbjct: 323 AASYP 327
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 217 bits (552), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 176/311 (56%), Gaps = 16/311 (5%)
Query: 46 ELFESWMSKHGKTYKCIEEKLHRFEIFKENLKHIDQRNKE----VTSYWLGLNEFADMSH 101
+L+ W + K Y +++ HR I+++N+KHI + N + +Y LGLN+F DM+
Sbjct: 3 DLWHQWKRMYNKEYNGADDQ-HRRNIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTF 61
Query: 102 EEFKNKYLGLKPQFPTRRQPSAEFSYRDVKALPKSVDWRKKGAVTPVKNQGSCGSCWAFS 161
EEFK KYL + + + +A+P +DWR+ G VT VK+QG+CGS WAFS
Sbjct: 62 EEFKAKYLTEMSRASDILSHGVPYEANN-RAVPDKIDWRESGYVTEVKDQGNCGSGWAFS 120
Query: 162 TVAAVEGINQIVSGNLTSLSEQELIDCDTSF-NNGCNGGLMDYAFKYIVASGGLHKEEDY 220
T +EG S SEQ+L+DC + NNGC GGLM+ A++Y+ GL E Y
Sbjct: 121 TTGTMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGLMENAYQYL-KQFGLETESSY 179
Query: 221 PYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQSLLKAL-AHQPVSVAIEASGTDFQFYS 279
PY EG C K+ + V ++G+ V E L + A P +VA++ +DF Y
Sbjct: 180 PYTAVEGQCRYNKQ-LGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVE-SDFMMYR 237
Query: 280 GGVFTGPCGAEL--DHGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRMKRNTGKPEGL 337
G++ + L +H V AVGYG G+DY IVKNSWG WGERGYIRM RN G +
Sbjct: 238 SGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGN---M 294
Query: 338 CGINKMASIPL 348
CGI +AS+P+
Sbjct: 295 CGIASLASLPM 305
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 214 bits (544), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 112/219 (51%), Positives = 142/219 (64%), Gaps = 5/219 (2%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTS- 191
LP VDWR +G VTPVK+Q CGSCWAFST A+EG + +G L SLSEQEL+DC +
Sbjct: 7 LPAGVDWRSRGCVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAE 66
Query: 192 FNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPEND 251
N C+GG M+ AF+Y++ SGG+ E+ YPYL + C + E +VV I G++DVP
Sbjct: 67 GNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECRAQSCE-KVVKILGFKDVPRRS 125
Query: 252 EQSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGS--DYI 309
E ++ ALA PVS+AIEA FQFY GVF CG +LDHGV VGYG K S D+
Sbjct: 126 EAAMKAALAKSPVSIAIEADQMPFQFYHEGVFDASCGTDLDHGVLLVGYGTDKESKKDFW 185
Query: 310 IVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPL 348
I+KNSWG WG GY+ M + G+ EG CG+ AS P+
Sbjct: 186 IMKNSWGTGWGRDGYMYMAMHKGE-EGQCGLLLDASFPV 223
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 125/305 (40%), Positives = 170/305 (55%), Gaps = 14/305 (4%)
Query: 51 WMSKHGKTYKCIEEKLHRFEIFKENLKHIDQRNKE----VTSYWLGLNEFADMSHEEFKN 106
W +GK YK E+ R I+++NLK + N E + SY LG+N DM+ EE +
Sbjct: 15 WKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVMS 74
Query: 107 KYLGLKPQFPTRRQPSAEFSYRDVKALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAV 166
L+ P++ Q + + + LP SVDWR+KG VT VK QGSCG+ WAFS V A+
Sbjct: 75 LMSSLR--VPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGAAWAFSAVGAL 132
Query: 167 EGINQIVSGNLTSLSEQELIDCDTSF--NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLM 224
E ++ +G L SLS Q L+DC T N GCNGG M AF+YI+ + G+ + YPY
Sbjct: 133 EAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKA 192
Query: 225 EEGTCEDKKEEMEVVTISGYQDVPENDEQSLLKALAHQ-PVSVAIEASGTDFQFYSGGVF 283
+ C+ + T S Y ++P E L +A+A++ PVSV ++A F Y GV+
Sbjct: 193 MDQKCQ-YDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVY 251
Query: 284 TGP-CGAELDHGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINK 342
P C ++HGV VGYG G +Y +VKNSWG +GE GYIRM RN G CGI
Sbjct: 252 YEPSCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIAS 308
Query: 343 MASIP 347
S P
Sbjct: 309 FPSYP 313
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 207 bits (528), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 143/223 (64%), Gaps = 10/223 (4%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P S+DWRKKGAVT VK+QG+CG CWAF A+EGI+ I +G L S+SEQ+++DCDT
Sbjct: 2 PASIDWRKKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXX 61
Query: 194 NGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQ 253
GG D AF++++ +GG+ + +YPY +GTC+ K I GY +VP N
Sbjct: 62 XX-XGGDADDAFRWVITNGGIASDANYPYTGVDGTCDLNKP--IAARIDGYTNVP-NSSS 117
Query: 254 SLLKALAHQPVSVAIEASGTDFQFYSG-GVFTG-PCG---AELDHGVAAVGYGKS-KGSD 307
+LL A+A QPVSV I S T FQ Y+G G+F G C A +DH V VGYG + +D
Sbjct: 118 ALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNAD 177
Query: 308 YIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPLKK 350
Y IVKNSWG +WG GYI ++RNT +P+G+C I+ S P K
Sbjct: 178 YWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTKS 220
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 207 bits (527), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 119/263 (45%), Positives = 161/263 (61%), Gaps = 16/263 (6%)
Query: 93 LNEFADMSHEEFKNKYLGLKPQFPTRRQPSAEFSYRDVKALPKSVDWRKKGAVTPVKNQG 152
+N F DM+ EEF+ G + + P + + E + + P+SVDWR+KG VTPVKNQG
Sbjct: 2 MNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEA---PRSVDWREKGYVTPVKNQG 58
Query: 153 SCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCD-TSFNNGCNGGLMDYAFKYIVAS 211
CGSCWAFS A+EG +G L SLSEQ L+DC N GCNGGLMDYAF+Y+ +
Sbjct: 59 QCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDN 118
Query: 212 GGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQSLLKALAH-QPVSVAIEA 270
GGL EE YPY E +C+ + V +G+ D+P+ E++L+KA+A P+SVAI+A
Sbjct: 119 GGLDSEESYPYEATEESCK-YNPKYSVANDAGFVDIPKQ-EKALMKAVATVGPISVAIDA 176
Query: 271 SGTDFQFYSGGVFTGP-CGAE-LDHGVAAVGYG----KSKGSDYIIVKNSWGPKWGERGY 324
F FY G++ P C +E +DHGV VGYG +S + Y +VKNSWG +WG GY
Sbjct: 177 GHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 236
Query: 325 IRMKRNTGKPEGLCGINKMASIP 347
++M ++ CGI AS P
Sbjct: 237 VKMAKDR---RNHCGIASAASYP 256
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 145/217 (66%), Gaps = 8/217 (3%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P SVD+R+KG VTPVKNQG CGSCWAFS+V A+EG + +G L +LS Q L+DC S N
Sbjct: 2 PDSVDYREKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSEN 60
Query: 194 NGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQ 253
+GC GG M AF+Y+ + G+ E+ YPY+ +E +C + GY+++PE +E+
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCM-YNPTGKAAKCRGYREIPEGNEK 119
Query: 254 SLLKALAH-QPVSVAIEASGTDFQFYSGGVFTG-PCGAE-LDHGVAAVGYGKSKGSDYII 310
+L +A+A PVSVAI+AS T FQFYS GV+ C ++ L+H V AVGYG+SKG+ + I
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKHWI 179
Query: 311 VKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+KNSWG WG GYI+M RN CGI +AS P
Sbjct: 180 IKNSWGENWGMGGYIKMARNK---NNACGIANLASFP 213
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 143/217 (65%), Gaps = 8/217 (3%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P SVD+RKKG VTPVKNQG CGSCWAFS+V A+EG + +G L +LS Q L+DC S N
Sbjct: 2 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSEN 60
Query: 194 NGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQ 253
+GC GG M AF+Y+ + G+ E+ YPY+ +E +C + GY+++PE +E+
Sbjct: 61 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCM-YNPTGKAAKCRGYREIPEGNEK 119
Query: 254 SLLKALAH-QPVSVAIEASGTDFQFYSGGVFTG-PCGAE-LDHGVAAVGYGKSKGSDYII 310
+L +A+A PVSVAI+AS T FQFYS GV+ C ++ L+H V AVGYG KG+ + I
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWI 179
Query: 311 VKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+KNSWG WG +GYI M RN CGI +AS P
Sbjct: 180 IKNSWGENWGNKGYILMARNK---NNACGIANLASFP 213
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 198 bits (504), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 143/217 (65%), Gaps = 8/217 (3%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P SVD+RKKG VTPVKNQG CGSCWAFS+V A+EG + +G L +LS Q L+DC S N
Sbjct: 4 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSEN 62
Query: 194 NGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQ 253
+GC GG M AF+Y+ + G+ E+ YPY+ +E +C + GY+++PE +E+
Sbjct: 63 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCM-YNPTGKAAKCRGYREIPEGNEK 121
Query: 254 SLLKALAH-QPVSVAIEASGTDFQFYSGGVFTG-PCGAE-LDHGVAAVGYGKSKGSDYII 310
+L +A+A PVSVAI+AS T FQFYS GV+ C ++ L+H V AVGYG KG+ + I
Sbjct: 122 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWI 181
Query: 311 VKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+KNSWG WG +GYI M RN CGI +AS P
Sbjct: 182 IKNSWGENWGNKGYILMARNK---NNACGIANLASFP 215
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 108/217 (49%), Positives = 143/217 (65%), Gaps = 8/217 (3%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P SVD+RKKG VTPVKNQG CGSCWAFS+V A+EG + +G L +LS Q L+DC S N
Sbjct: 1 PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSEN 59
Query: 194 NGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQ 253
+GC GG M AF+Y+ + G+ E+ YPY+ +E +C + GY+++PE +E+
Sbjct: 60 DGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCM-YNPTGKAAKCRGYREIPEGNEK 118
Query: 254 SLLKALAH-QPVSVAIEASGTDFQFYSGGVFTG-PCGAE-LDHGVAAVGYGKSKGSDYII 310
+L +A+A PVSVAI+AS T FQFYS GV+ C ++ L+H V AVGYG KG+ + I
Sbjct: 119 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWI 178
Query: 311 VKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+KNSWG WG +GYI M RN CGI +AS P
Sbjct: 179 IKNSWGENWGNKGYILMARNK---NNACGIANLASFP 212
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/217 (48%), Positives = 143/217 (65%), Gaps = 8/217 (3%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P S+D+RKKG VTPVKNQG CGSCWAFS+V A+EG + +G L +LS Q L+DC S N
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSEN 60
Query: 194 NGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQ 253
+GC GG M AF+Y+ + G+ E+ YPY+ ++ +C + GY+++PE +E+
Sbjct: 61 DGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCM-YNPTGKAAKCRGYREIPEGNEK 119
Query: 254 SLLKALAH-QPVSVAIEASGTDFQFYSGGVFTGP-CGAE-LDHGVAAVGYGKSKGSDYII 310
+L +A+A PVSVAI+AS T FQFYS GV+ C ++ L+H V AVGYG KG+ + I
Sbjct: 120 ALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKHWI 179
Query: 311 VKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+KNSWG WG +GYI M RN CGI +AS P
Sbjct: 180 IKNSWGESWGNKGYILMARNK---NNACGIANLASFP 213
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 142/215 (66%), Gaps = 8/215 (3%)
Query: 136 SVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNNG 195
SVD+RKKG VTPVKNQG CGSCWAFS+V A+EG + +G L +LS Q L+DC S N+G
Sbjct: 2 SVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC-VSENDG 60
Query: 196 CNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQSL 255
C GG M AF+Y+ + G+ E+ YPY+ +E +C + GY+++PE +E++L
Sbjct: 61 CGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCM-YNPTGKAAKCRGYREIPEGNEKAL 119
Query: 256 LKALAH-QPVSVAIEASGTDFQFYSGGVFTG-PCGAE-LDHGVAAVGYGKSKGSDYIIVK 312
+A+A PVSVAI+AS T FQFYS GV+ C ++ L+H V AVGYG KG+ + I+K
Sbjct: 120 KRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIK 179
Query: 313 NSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
NSWG WG +GYI M RN CGI +AS P
Sbjct: 180 NSWGENWGNKGYILMARNKNNA---CGIANLASFP 211
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 194 bits (494), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 139/223 (62%), Gaps = 12/223 (5%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCD-TS 191
LPKSVDWRKKG VTPVKNQ CGSCWAFS A+EG +G L SLSEQ L+DC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 192 FNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPEND 251
N GCNGG M AF+Y+ +GGL EE YPY+ + C+ + E V +G+ V
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPEN-SVAQDTGFTVVAPGK 119
Query: 252 EQSLLKALAH-QPVSVAIEASGTDFQFYSGGVFTGP-CGAE-LDHGVAAVGYG----KSK 304
E++L+KA+A P+SVA++A + FQFY G++ P C ++ LDHGV VGYG S
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 305 GSDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
S Y +VKNSWGP+WG GY+++ ++ CGI AS P
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAKDK---NNHCGIATAASYP 219
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 194 bits (493), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/222 (49%), Positives = 142/222 (63%), Gaps = 13/222 (5%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCD-TSF 192
P+SVDWR+KG VTPVKNQG CGSCWAFS A+EG +G L SLSEQ L+DC
Sbjct: 3 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 62
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
N GCNGGLMDYAF+Y+ +GGL EE YPY E +C+ + V +G+ D+P+ E
Sbjct: 63 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK-YNPKYSVANDTGFVDIPKQ-E 120
Query: 253 QSLLKALAH-QPVSVAIEASGTDFQFYSGGVFTGP-CGAE-LDHGVAAVGYG----KSKG 305
++L+KA+A P+SVAI+A F FY G++ P C +E +DHGV VGYG +S
Sbjct: 121 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 180
Query: 306 SDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+ Y +VKNSWG +WG GY++M ++ CGI AS P
Sbjct: 181 NKYWLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAASYP 219
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 194 bits (493), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 109/222 (49%), Positives = 142/222 (63%), Gaps = 13/222 (5%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCD-TSF 192
P+SVDWR+KG VTPVKNQG CGSCWAFS A+EG +G L SLSEQ L+DC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
N GCNGGLMDYAF+Y+ +GGL EE YPY E +C+ + V +G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK-YNPKYSVANDTGFVDIPKQ-E 119
Query: 253 QSLLKALAH-QPVSVAIEASGTDFQFYSGGVFTGP-CGAE-LDHGVAAVGYG----KSKG 305
++L+KA+A P+SVAI+A F FY G++ P C +E +DHGV VGYG +S
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 306 SDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+ Y +VKNSWG +WG GY++M ++ CGI AS P
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAASYP 218
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 194 bits (493), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 109/222 (49%), Positives = 142/222 (63%), Gaps = 13/222 (5%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCD-TSF 192
P+SVDWR+KG VTPVKNQG CGSCWAFS A+EG +G L SLSEQ L+DC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
N GCNGGLMDYAF+Y+ +GGL EE YPY E +C+ + V +G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK-YNPKYSVANDAGFVDIPKQ-E 119
Query: 253 QSLLKALAH-QPVSVAIEASGTDFQFYSGGVFTGP-CGAE-LDHGVAAVGYG----KSKG 305
++L+KA+A P+SVAI+A F FY G++ P C +E +DHGV VGYG +S
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 306 SDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+ Y +VKNSWG +WG GY++M ++ CGI AS P
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAASYP 218
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/217 (47%), Positives = 140/217 (64%), Gaps = 8/217 (3%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P S+D+RKKG VTPVKNQG CGSCWAFS+V A+EG + +G L +L+ Q L+DC S N
Sbjct: 2 PDSIDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDC-VSEN 60
Query: 194 NGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQ 253
+GC GG M AF+Y+ + G+ E+ YPY+ ++ +C + GY+++PE +E
Sbjct: 61 DGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCM-YNPTGKAAKCRGYREIPEGNEA 119
Query: 254 SLLKALAH-QPVSVAIEASGTDFQFYSGGVFTGP-CGAE-LDHGVAAVGYGKSKGSDYII 310
+L +A+A PVSVAI+AS T FQFYS GV+ C ++ L+H V AVGYG G+ + I
Sbjct: 120 ALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKHWI 179
Query: 311 VKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+KNSWG WG GYI M RN CGI +AS P
Sbjct: 180 IKNSWGESWGNAGYILMARNKNNA---CGIANLASFP 213
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 191 bits (485), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 108/222 (48%), Positives = 141/222 (63%), Gaps = 13/222 (5%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCD-TSF 192
P+SVDWR+KG VTPVKNQG CGS WAFS A+EG +G L SLSEQ L+DC
Sbjct: 3 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 62
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
N GCNGGLMDYAF+Y+ +GGL EE YPY E +C+ + V +G+ D+P+ E
Sbjct: 63 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK-YNPKYSVANDTGFVDIPKQ-E 120
Query: 253 QSLLKALAH-QPVSVAIEASGTDFQFYSGGVFTGP-CGAE-LDHGVAAVGYG----KSKG 305
++L+KA+A P+SVAI+A F FY G++ P C +E +DHGV VGYG +S
Sbjct: 121 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 180
Query: 306 SDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+ Y +VKNSWG +WG GY++M ++ CGI AS P
Sbjct: 181 NKYWLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAASYP 219
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 191 bits (484), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 108/222 (48%), Positives = 141/222 (63%), Gaps = 13/222 (5%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCD-TSF 192
P+SVDWR+KG VTPVKNQG CGS WAFS A+EG +G L SLSEQ L+DC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
N GCNGGLMDYAF+Y+ +GGL EE YPY E +C+ + V +G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK-YNPKYSVANDTGFVDIPKQ-E 119
Query: 253 QSLLKALAH-QPVSVAIEASGTDFQFYSGGVFTGP-CGAE-LDHGVAAVGYG----KSKG 305
++L+KA+A P+SVAI+A F FY G++ P C +E +DHGV VGYG +S
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 306 SDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+ Y +VKNSWG +WG GY++M ++ CGI AS P
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAASYP 218
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 191 bits (484), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 123/322 (38%), Positives = 176/322 (54%), Gaps = 28/322 (8%)
Query: 44 LIELFESWMSKHGKTYKCIEEKLHRFEIFKENLKHIDQRNKE----VTSYWLGLNEFADM 99
+ E +E++ + + ++Y +E+ R +IF++ L+ ++ N++ + SY LG+N F DM
Sbjct: 18 VAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDM 77
Query: 100 SHEEFKNKYLGL-------KPQFP--TRRQPSAEFSYRDVKALPKSVDWRKKGAVTPVKN 150
+ EE K GL K P TR S R P S DWR +G V+PVKN
Sbjct: 78 TPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVR----YPASFDWRDQGMVSPVKN 133
Query: 151 QGSCGSCWAFSTVAAVEGINQIVSGN--LTSLSEQELIDCDTSFNNGCNGGLMDYAFKYI 208
QGSCGS WAFS+ A+E +I +G +S+SEQ+L+DC + GC+GG M+ AF Y+
Sbjct: 134 QGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPN-ALGCSGGWMNDAFTYV 192
Query: 209 VASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQSLLKALAHQ-PVSVA 267
+GG+ E YPY M +G C ++ +SGY + DE L +A + PV+VA
Sbjct: 193 AQNGGIDSEGAYPYEMADGNCHYDPNQV-AARLSGYVYLSGPDENMLADMVATKGPVAVA 251
Query: 268 IEASGTDFQFYSGGVFTGPC--GAELDHGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYI 325
+A F YSGGV+ P + H V VGYG G DY +VKNSWG WG GY
Sbjct: 252 FDAD-DPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYF 310
Query: 326 RMKRNTGKPEGLCGINKMASIP 347
++ RN CGI +AS+P
Sbjct: 311 KIARNANNH---CGIAGVASVP 329
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 191 bits (484), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 107/223 (47%), Positives = 138/223 (61%), Gaps = 12/223 (5%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCD-TS 191
LPKSVDWRKKG VTPVKNQ CGS WAFS A+EG +G L SLSEQ L+DC
Sbjct: 1 LPKSVDWRKKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQ 60
Query: 192 FNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPEND 251
N GCNGG M AF+Y+ +GGL EE YPY+ + C+ + E V +G+ V
Sbjct: 61 GNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPEN-SVAQDTGFTVVAPGK 119
Query: 252 EQSLLKALAH-QPVSVAIEASGTDFQFYSGGVFTGP-CGAE-LDHGVAAVGYG----KSK 304
E++L+KA+A P+SVA++A + FQFY G++ P C ++ LDHGV VGYG S
Sbjct: 120 EKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSD 179
Query: 305 GSDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
S Y +VKNSWGP+WG GY+++ ++ CGI AS P
Sbjct: 180 NSKYWLVKNSWGPEWGSNGYVKIAKDK---NNHCGIATAASYP 219
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 190 bits (483), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 108/222 (48%), Positives = 141/222 (63%), Gaps = 13/222 (5%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCD-TSF 192
P+SVDWR+KG VTPVKNQG CGS WAFS A+EG +G L SLSEQ L+DC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
N GCNGGLMDYAF+Y+ +GGL EE YPY E +C+ + V +G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK-YNPKYSVANDTGFVDIPKQ-E 119
Query: 253 QSLLKALAH-QPVSVAIEASGTDFQFYSGGVFTGP-CGAE-LDHGVAAVGYG----KSKG 305
++L+KA+A P+SVAI+A F FY G++ P C +E +DHGV VGYG +S
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 179
Query: 306 SDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+ Y +VKNSWG +WG GY++M ++ CGI AS P
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAASYP 218
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 190 bits (482), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/222 (48%), Positives = 141/222 (63%), Gaps = 13/222 (5%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCD-TSF 192
P+SVDWR+KG VTPVKNQG CGS WAFS A+EG +G L SLSEQ L+DC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
N GCNGGLMDYAF+Y+ +GGL EE YPY E +C+ + V +G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK-YNPKYSVANDAGFVDIPKQ-E 119
Query: 253 QSLLKALAH-QPVSVAIEASGTDFQFYSGGVFTGP-CGAE-LDHGVAAVGYG----KSKG 305
++L+KA+A P+SVAI+A F FY G++ P C +E +DHGV VGYG +S
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDD 179
Query: 306 SDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+ Y +VKNSWG +WG GY++M ++ CGI AS P
Sbjct: 180 NKYWLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAASYP 218
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 130/219 (59%), Gaps = 8/219 (3%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTS- 191
LP SVDWR+KG VT VK QGSCG+CWAFS V A+E ++ +G L SLS Q L+DC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 192 -FNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPEN 250
N GCNGG M AF+YI+ + G+ + YPY + C+ + T S Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYG 119
Query: 251 DEQSLLKALAHQ-PVSVAIEASGTDFQFYSGGVFTGP-CGAELDHGVAAVGYGKSKGSDY 308
E L +A+A++ PVSV ++A F Y GV+ P C ++HGV VGYG G +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 309 IIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+VKNSWG +GE GYIRM RN G CGI S P
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 215
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/221 (45%), Positives = 131/221 (59%), Gaps = 8/221 (3%)
Query: 131 KALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDT 190
+ LP SVDWR+KG VT VK QGSCG+CWAFS V A+E ++ +G L SLS Q L+DC T
Sbjct: 2 RILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCST 61
Query: 191 S--FNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVP 248
N GCNGG M AF+YI+ + G+ + YPY + C+ + T S Y ++P
Sbjct: 62 EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELP 120
Query: 249 ENDEQSLLKALAHQ-PVSVAIEASGTDFQFYSGGVFTGP-CGAELDHGVAAVGYGKSKGS 306
E L +A+A++ PVSV ++A F Y GV+ P C ++HGV VGYG G
Sbjct: 121 YGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGK 180
Query: 307 DYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+Y +VKNSWG +GE GYIRM RN G CGI S P
Sbjct: 181 EYWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 218
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 130/219 (59%), Gaps = 8/219 (3%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTS- 191
LP SVDWR+KG VT VK QGSCG+CWAFS V A+E ++ +G L SLS Q L+DC T
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 192 -FNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPEN 250
N GCNGG M AF+YI+ + G+ + YPY + C+ + T S Y ++P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYG 120
Query: 251 DEQSLLKALAHQ-PVSVAIEASGTDFQFYSGGVFTGP-CGAELDHGVAAVGYGKSKGSDY 308
E L +A+A++ PVSV ++A F Y GV+ P C ++HGV VGYG G +Y
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 180
Query: 309 IIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+VKNSWG +GE GYIRM RN G CGI S P
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 216
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 185 bits (470), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 130/219 (59%), Gaps = 8/219 (3%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTS- 191
LP SVDWR+KG VT VK QGSCG+CWAFS V A+E ++ +G L SLS Q L+DC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 192 -FNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPEN 250
N GCNGG M AF+YI+ + G+ + YPY + C+ + T S Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYG 119
Query: 251 DEQSLLKALAHQ-PVSVAIEASGTDFQFYSGGVFTGP-CGAELDHGVAAVGYGKSKGSDY 308
E L +A+A++ PVSV ++A F Y GV+ P C ++HGV VGYG G +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 309 IIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+VKNSWG +GE GYIRM RN G CGI S P
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 215
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 185 bits (469), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 130/219 (59%), Gaps = 8/219 (3%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTS- 191
LP SVDWR+KG VT VK QGSCG+CWAFS V A+E ++ +G L SLS Q L+DC T
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 192 -FNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPEN 250
N GCNGG M AF+YI+ + G+ + YPY + C+ + T S Y ++P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYG 120
Query: 251 DEQSLLKALAHQ-PVSVAIEASGTDFQFYSGGVFTGP-CGAELDHGVAAVGYGKSKGSDY 308
E L +A+A++ PVSV ++A F Y GV+ P C ++HGV VGYG G +Y
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 180
Query: 309 IIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+VKNSWG +GE GYIRM RN G CGI S P
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 216
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 184 bits (468), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 130/219 (59%), Gaps = 8/219 (3%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTS- 191
LP SVDWR+KG VT VK QGSCG+CWAFS V A+E ++ +G L SLS Q L+DC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 192 -FNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPEN 250
N GCNGG M AF+YI+ + G+ + YPY + C+ + T Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCRKYTELPYG 119
Query: 251 DEQSLLKALAHQ-PVSVAIEASGTDFQFYSGGVFTGP-CGAELDHGVAAVGYGKSKGSDY 308
E L +A+A++ PVSV ++A F Y GV+ P C ++HGV VGYG G +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 309 IIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+VKNSWG +GE+GYIRM RN G CGI S P
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARNKGNH---CGIASFPSYP 215
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 184 bits (467), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 130/219 (59%), Gaps = 8/219 (3%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTS- 191
LP SVDWR+KG VT VK QGSCG+CWAFS V A+E ++ +G L +LS Q L+DC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCSTEK 60
Query: 192 -FNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPEN 250
N GCNGG M AF+YI+ + G+ + YPY + C+ + T S Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYG 119
Query: 251 DEQSLLKALAHQ-PVSVAIEASGTDFQFYSGGVFTGP-CGAELDHGVAAVGYGKSKGSDY 308
E L +A+A++ PVSV ++A F Y GV+ P C ++HGV VGYG G +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 309 IIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+VKNSWG +GE GYIRM RN G CGI S P
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 215
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 184 bits (466), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 129/219 (58%), Gaps = 8/219 (3%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTS- 191
LP SVDWR+KG VT VK QGSCG+CWAFS V A+E ++ +G L SLS Q L+DC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTKK 60
Query: 192 -FNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPEN 250
N GCNGG M AF+YI+ + G+ + YPY + C+ T Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSAYRAATCRKYTELPYG 119
Query: 251 DEQSLLKALAHQ-PVSVAIEASGTDFQFYSGGVFTGP-CGAELDHGVAAVGYGKSKGSDY 308
E L +A+A++ PVSV ++A F Y GV+ P C ++HGV VGYG G +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 309 IIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+VKNSWG +GE+GYIRM RN G CGI S P
Sbjct: 180 WLVKNSWGHNFGEKGYIRMARNKGNH---CGIASFPSYP 215
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 130/220 (59%), Gaps = 8/220 (3%)
Query: 132 ALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTS 191
ALP SVDWR+KG VT VK QGSCG+ WAFS V A+E ++ +G L SLS Q L+DC T
Sbjct: 2 ALPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTE 61
Query: 192 --FNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPE 249
N GCNGG M AF+YI+ + G+ + YPY + C+ + T S Y ++P
Sbjct: 62 KYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPY 120
Query: 250 NDEQSLLKALAHQ-PVSVAIEASGTDFQFYSGGVFTGP-CGAELDHGVAAVGYGKSKGSD 307
E L +A+A++ PVSV ++A F Y GV+ P C ++HGV VGYG G +
Sbjct: 121 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKE 180
Query: 308 YIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
Y +VKNSWG +GE GYIRM RN G CGI S P
Sbjct: 181 YWLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 217
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 129/219 (58%), Gaps = 8/219 (3%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTS- 191
LP SVDWR+KG VT VK QGSCG+ WAFS V A+E ++ +G L SLS Q L+DC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 192 -FNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPEN 250
N GCNGG M AF+YI+ + G+ + YPY + C+ + T S Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYG 119
Query: 251 DEQSLLKALAHQ-PVSVAIEASGTDFQFYSGGVFTGP-CGAELDHGVAAVGYGKSKGSDY 308
E L +A+A++ PVSV ++A F Y GV+ P C ++HGV VGYG G +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 309 IIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+VKNSWG +GE GYIRM RN G CGI S P
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 215
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 181 bits (459), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 129/219 (58%), Gaps = 8/219 (3%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTS- 191
LP SVDWR+KG VT VK QGSCG+ WAFS V A+E ++ +G L SLS Q L+DC T
Sbjct: 2 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 61
Query: 192 -FNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPEN 250
N GCNGG M AF+YI+ + G+ + YPY + C+ + T S Y ++P
Sbjct: 62 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQKCQ-YDSKYRAATCSKYTELPYG 120
Query: 251 DEQSLLKALAHQ-PVSVAIEASGTDFQFYSGGVFTGP-CGAELDHGVAAVGYGKSKGSDY 308
E L +A+A++ PVSV ++A F Y GV+ P C ++HGV VGYG G +Y
Sbjct: 121 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 180
Query: 309 IIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+VKNSWG +GE GYIRM RN G CGI S P
Sbjct: 181 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 216
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 181 bits (458), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 100/219 (45%), Positives = 129/219 (58%), Gaps = 8/219 (3%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTS- 191
LP SVDWR+KG VT VK QGSCG+ WAFS V A+E ++ +G L SLS Q L+DC T
Sbjct: 1 LPDSVDWREKGCVTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEK 60
Query: 192 -FNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPEN 250
N GCNGG M AF+YI+ + G+ + YPY + C+ + T S Y ++P
Sbjct: 61 YGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDLKCQ-YDSKYRAATCSKYTELPYG 119
Query: 251 DEQSLLKALAHQ-PVSVAIEASGTDFQFYSGGVFTGP-CGAELDHGVAAVGYGKSKGSDY 308
E L +A+A++ PVSV ++A F Y GV+ P C ++HGV VGYG G +Y
Sbjct: 120 REDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGDLNGKEY 179
Query: 309 IIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+VKNSWG +GE GYIRM RN G CGI S P
Sbjct: 180 WLVKNSWGHNFGEEGYIRMARNKGNH---CGIASFPSYP 215
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 180 bits (457), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 133/227 (58%), Gaps = 18/227 (7%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P+S DW KKG +T VK QG CGS WAFS A+E + I +GNL SLSEQELIDC +
Sbjct: 3 PESWDWSKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDC-VDES 61
Query: 194 NGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGY-------QD 246
GC G +F+++V GG+ E DYPY +G C+ E + VTI Y +
Sbjct: 62 EGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCK-ANEIQDKVTIDNYGVQILSNES 120
Query: 247 VPENDEQSLLKALAHQPVSVAIEASGTDFQFYSGGVFTG-----PCGAELDHGVAAVGYG 301
E SL + QP+SV+I+A DF FYSGG++ G P G ++H V VGYG
Sbjct: 121 TESEAESSLQSFVLEQPISVSIDAK--DFHFYSGGIYDGGNCSSPYG--INHFVLIVGYG 176
Query: 302 KSKGSDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPL 348
G DY I KNSWG WG GYIR++RNTG G+CG+N AS P+
Sbjct: 177 SEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPI 223
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/222 (42%), Positives = 139/222 (62%), Gaps = 13/222 (5%)
Query: 134 PKSVDWRKKGA-VTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
P S+DWRKKG V+PVKNQGSCGSCW FST A+E I +G + SL+EQ+L+DC +F
Sbjct: 2 PPSMDWRKKGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNF 61
Query: 193 NN-GCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPEND 251
NN GC GGL AF+YI + G+ E+ YPY ++ C+ + ++ + + ++ ND
Sbjct: 62 NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDDHCKFQPDK-AIAFVKDVANITMND 120
Query: 252 EQSLLKALA-HQPVSVAIEASGTDFQFYSGGVFTGP----CGAELDHGVAAVGYGKSKGS 306
E+++++A+A + PVS A E + DF Y G+++ +++H V AVGYG+ G
Sbjct: 121 EEAMVEAVALYNPVSFAFEVT-NDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEENGI 179
Query: 307 DYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPL 348
Y IVKNSWGP+WG GY ++R + +CG+ AS P+
Sbjct: 180 PYWIVKNSWGPQWGMNGYFLIERG----KNMCGLAACASYPI 217
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 135/219 (61%), Gaps = 10/219 (4%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCD-TSF 192
P+SVDWR+KG VTPVKNQG CG+ +AFS A+EG +G L SLSEQ L+DC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
N GCNGGLMDYAF+Y+ +GGL EE YPY E +C+ + V G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK-YNPKYSVANDVGFVDIPK-QE 119
Query: 253 QSLLKALAH-QPVSVAIEASGTDFQFYSGGVF--TGPCGAELDHGVAAVGYG-KSKGSDY 308
++L+KA+A P+SVAI+A F FY G++ + + L+H + VGYG S Y
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFSSDCSSSSLNHAMLVVGYGFISNNQKY 179
Query: 309 IIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
+VKNSWG +WG GY++M ++ CGI AS P
Sbjct: 180 WLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAASYP 215
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 134/218 (61%), Gaps = 15/218 (6%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P +VDWR+KGAVTPVK+QG CGSCWAFST+ +EG Q+ L SLSEQ L+ CDT +
Sbjct: 2 PAAVDWREKGAVTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDT-ID 60
Query: 194 NGCNGGLMDYAFKYIVAS--GGLHKEEDYPYLM---EEGTCEDKKEEMEVVTISGYQDVP 248
GC GGLMD AF +IV S G + E YPY+ E+ C+ E+ I+ + D+P
Sbjct: 61 FGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIG-AAITDHVDLP 119
Query: 249 ENDEQSLLKALAHQ-PVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSD 307
+ DE ++ LA P+++A++A T F Y+GG+ T +LDHGV VGY +
Sbjct: 120 Q-DEDAIAAYLAENGPLAIAVDA--TSFMDYNGGILTSCTSEQLDHGVLLVGYNDASNPP 176
Query: 308 YIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMAS 345
Y I+KNSW WGE GYIR+++ T + C +N+ S
Sbjct: 177 YWIIKNSWSNMWGEDGYIRIEKGTNQ----CLMNQAVS 210
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/224 (41%), Positives = 129/224 (57%), Gaps = 16/224 (7%)
Query: 136 SVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNN- 194
+ DWR VTPVK+Q +CGSCWAFS++ +VE I L +LSEQEL+DC SF N
Sbjct: 21 AYDWRLHSGVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDC--SFKNY 78
Query: 195 GCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQS 254
GCNGGL++ AF+ ++ GG+ + DYPY+ + + E I Y VP+N +
Sbjct: 79 GCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKE 138
Query: 255 LLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYG----------KSK 304
L+ L P+S+++ S DF FY G+F G CG +L+H V VG+G K +
Sbjct: 139 ALRFLG--PISISVAVS-DDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGE 195
Query: 305 GSDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPL 348
Y I+KNSWG +WGERG+I ++ + CG+ A IPL
Sbjct: 196 KHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 239
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 165 bits (417), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 126/204 (61%), Gaps = 7/204 (3%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P +VDWR +GAVT VK+QG CGSCWAFS + VE + LT+LSEQ L+ CD + +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-D 60
Query: 194 NGCNGGLMDYAFKYIVA--SGGLHKEEDYPYLMEEGTCEDKKEEMEVV--TISGYQDVPE 249
+GC+GGLM+ AF++IV +G ++ E+ YPY EG V TI+G+ ++P+
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 250 NDEQSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYI 309
++ Q + PV+VA++AS + Y+GGV T +LDHGV VGY S Y
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDSAAVPYW 178
Query: 310 IVKNSWGPKWGERGYIRMKRNTGK 333
I+KNSW +WGE GYIR+ + + +
Sbjct: 179 IIKNSWTTQWGEEGYIRIAKGSNQ 202
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 164 bits (415), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 90/172 (52%), Positives = 115/172 (66%), Gaps = 6/172 (3%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCD-TSF 192
P+SVDWR+KG VTPVKNQG CGSCWAFS A+EG +G L SLSEQ L+DC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
N GCNGGLMDYAF+Y+ +GGL EE YPY E +C+ + V +G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK-YNPKYSVANDTGFVDIPKQ-E 119
Query: 253 QSLLKALAH-QPVSVAIEASGTDFQFYSGGVFTGP-CGAE-LDHGVAAVGYG 301
++L+KA+A P+SVAI+A F FY G++ P C +E +DHGV VGYG
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 164 bits (415), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 88/204 (43%), Positives = 125/204 (61%), Gaps = 7/204 (3%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P +VDWR +GAVT VK+QG CGSCWAFS + VE + LT+LSEQ L+ CD + +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT-D 60
Query: 194 NGCNGGLMDYAFKYIVA--SGGLHKEEDYPYLMEEGTCEDKKEEMEVV--TISGYQDVPE 249
+GC+GGLM+ AF++IV +G ++ E+ YPY EG V TI+G+ ++P+
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 250 NDEQSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYI 309
++ Q + PV+VA++AS + Y+GGV T LDHGV VGY S Y
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEALDHGVLLVGYNDSAAVPYW 178
Query: 310 IVKNSWGPKWGERGYIRMKRNTGK 333
I+KNSW +WGE GYIR+ + + +
Sbjct: 179 IIKNSWTTQWGEEGYIRIAKGSNQ 202
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 124/230 (53%), Gaps = 14/230 (6%)
Query: 129 DVKALPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDC 188
D K + DWR G VTPVK+Q CGSCWAFS+V +VE I L SEQEL+DC
Sbjct: 16 DAKLDRIAYDWRLHGGVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDC 75
Query: 189 DTSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVP 248
NNGC GG + AF ++ GGL ++DYPY+ + K E TI Y +P
Sbjct: 76 SVK-NNGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNLPETCNLKRCNERYTIKSYVSIP 134
Query: 249 ENDEQSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGY-------- 300
++ + L+ L P+S++I AS DF FY GG + G CGA +H V VGY
Sbjct: 135 DDKFKEALRYLG--PISISIAAS-DDFAFYRGGFYDGECGAAPNHAVILVGYGMKDIYNE 191
Query: 301 --GKSKGSDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPL 348
G+ + Y I+KNSWG WGE GYI ++ + + C I A +PL
Sbjct: 192 DTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPL 241
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 128/224 (57%), Gaps = 16/224 (7%)
Query: 136 SVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFNN- 194
+ DWR VTPVK+Q +CGS WAFS++ +VE I L +LSEQEL+DC SF N
Sbjct: 20 AYDWRLHSGVTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDC--SFKNY 77
Query: 195 GCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQS 254
GCNGGL++ AF+ ++ GG+ + DYPY+ + + E I Y VP+N +
Sbjct: 78 GCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKE 137
Query: 255 LLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYG----------KSK 304
L+ L P+S+++ S DF FY G+F G CG +L+H V VG+G K +
Sbjct: 138 ALRFLG--PISISVAVS-DDFAFYKEGIFDGECGDQLNHAVMLVGFGMKEIVNPLTKKGE 194
Query: 305 GSDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIPL 348
Y I+KNSWG +WGERG+I ++ + CG+ A IPL
Sbjct: 195 KHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPL 238
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 125/204 (61%), Gaps = 7/204 (3%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P +VDWR +GAVT VK+QG CGSCWAFS + VE + LT+L+EQ L+ CD + +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-D 60
Query: 194 NGCNGGLMDYAFKYIVA--SGGLHKEEDYPYLMEEGTCEDKKEEMEVV--TISGYQDVPE 249
+GC+GGLM+ AF++IV +G ++ E+ YPY EG V TI+G+ ++P+
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 250 NDEQSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYI 309
++ Q + PV+VA++AS + Y+GGV T +LDHGV VGY Y
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYW 178
Query: 310 IVKNSWGPKWGERGYIRMKRNTGK 333
I+KNSW +WGE GYIR+ + + +
Sbjct: 179 IIKNSWTTQWGEEGYIRIAKGSNQ 202
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/204 (42%), Positives = 125/204 (61%), Gaps = 7/204 (3%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P +VDWR +GAVT VK+QG CGSCWAFS + VE + LT+L+EQ L+ CD + +
Sbjct: 2 PAAVDWRARGAVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT-D 60
Query: 194 NGCNGGLMDYAFKYIVA--SGGLHKEEDYPYLMEEGTCEDKKEEMEVV--TISGYQDVPE 249
+GC+GGLM+ AF++IV +G ++ E+ YPY EG V TI+G+ ++P+
Sbjct: 61 SGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQ 120
Query: 250 NDEQSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELDHGVAAVGYGKSKGSDYI 309
++ Q + PV+VA++AS + Y+GGV T +LDHGV VGY Y
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDAS--SWMTYTGGVMTSCVSEQLDHGVLLVGYNDGAAVPYW 178
Query: 310 IVKNSWGPKWGERGYIRMKRNTGK 333
I+KNSW +WGE GYIR+ + + +
Sbjct: 179 IIKNSWTTQWGEEGYIRIAKGSNQ 202
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 160 bits (405), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 89/172 (51%), Positives = 114/172 (66%), Gaps = 6/172 (3%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCD-TSF 192
P+SVDWR+KG VTPVKNQG CGS WAFS A+EG +G L SLSEQ L+DC
Sbjct: 2 PRSVDWREKGYVTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQG 61
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
N GCNGGLMDYAF+Y+ +GGL EE YPY E +C+ + V +G+ D+P+ E
Sbjct: 62 NEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK-YNPKYSVANDTGFVDIPKQ-E 119
Query: 253 QSLLKALAH-QPVSVAIEASGTDFQFYSGGVFTGP-CGAE-LDHGVAAVGYG 301
++L+KA+A P+SVAI+A F FY G++ P C +E +DHGV VGYG
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 171
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 98/219 (44%), Positives = 119/219 (54%), Gaps = 18/219 (8%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P DWR KGAVT VK+QG CGSCWAFS VEG + G L SLSEQEL+DCD +
Sbjct: 2 PPEWDWRSKGAVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCD-KMD 60
Query: 194 NGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPE--ND 251
C GGL A+ I GGL E+DY Y +C+ E+ +V QD E +
Sbjct: 61 KACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQSCQFSAEKAKVYI----QDSVELSQN 116
Query: 252 EQSLLKALAHQ-PVSVAIEASGTDFQFYSGGV---FTGPCGAEL-DHGVAAVGYGKSKGS 306
EQ L LA + P+SVAI A G QFY G+ C L DH V VGYG+
Sbjct: 117 EQKLAAWLAKRGPISVAINAFG--MQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDV 174
Query: 307 DYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMAS 345
+ +KNSWG WGE+GY + R +G CG+N MAS
Sbjct: 175 PFWAIKNSWGTDWGEKGYYYLHRGSGA----CGVNTMAS 209
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 141/289 (48%), Gaps = 21/289 (7%)
Query: 45 IELFESWMSKHGKTYKCIEEKLHRFEIFKENLKHIDQRNKEVTSYWLGLNEFADMSHEEF 104
I+ FE + K+Y E++ + F E++K++ +N +D+S +EF
Sbjct: 5 IKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG-------AINHLSDLSLDEF 57
Query: 105 KNKYLGLKPQF---PTRRQPSAEFSYRDVKA-LPKSVDWRKKGAVTPVKNQGSCGSCWAF 160
KN++L F T+ +AE + + P +D R+ VTP++ QG CGS WAF
Sbjct: 58 KNRFLMSAEAFEHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAF 117
Query: 161 STVAAVEGINQIVSGNLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIVASGGLHKEEDY 220
S VAA E L+EQEL+DC + +GC+G + +YI G+ +E Y
Sbjct: 118 SGVAATESAYLAYRDQSLDLAEQELVDCASQ--HGCHGDTIPRGIEYI-QHNGVVQESYY 174
Query: 221 PYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQSLLKALA--HQPVSVAIEASGTD-FQF 277
Y+ E +C ++ + IS Y + + + +ALA H ++V I D F+
Sbjct: 175 RYVAREQSC--RRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRH 232
Query: 278 YSG-GVFTGPCGAELD-HGVAAVGYGKSKGSDYIIVKNSWGPKWGERGY 324
Y G + G + + H V VGY ++G DY IV+NSW WG+ GY
Sbjct: 233 YDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 281
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 133/248 (53%), Gaps = 36/248 (14%)
Query: 128 RDVKALPKSVDWRK-KGA--VTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTS--LSE 182
+ + +LP+S DWR +G V+PV+NQ SCGSC++F+++ +E +I++ N + LS
Sbjct: 201 QQILSLPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSP 260
Query: 183 QELIDCDTSFNNGCNGGLMDYAFKYIVASG-----GLHKEEDYPYLMEEGTCEDKKEEME 237
QE++ C + + GC+GG F Y++A G+ +E +PY + C+ K+ +
Sbjct: 261 QEVVSC-SPYAQGCDGG-----FPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCLR 314
Query: 238 VVTISGYQDVPE----NDEQSLLKALAHQPVSVAIEASGTDFQFYSGGVF--TGPCGA-- 289
+ Y N+ L+ + H P++VA E DF Y G++ TG
Sbjct: 315 YYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHD-DFLHYHSGIYHHTGLSDPFN 373
Query: 290 --EL-DHGVAAVGYGKS--KGSDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINK-- 342
EL +H V VGYGK G DY IVKNSWG +WGE GY R++R T + C I
Sbjct: 374 PFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDE----CAIESIA 429
Query: 343 MASIPLKK 350
MA+IP+ K
Sbjct: 430 MAAIPIPK 437
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 101/197 (51%), Gaps = 10/197 (5%)
Query: 133 LPKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSF 192
+P +D R VTP++ QG CGSCWAFS VAA E LSEQEL+DC +
Sbjct: 11 VPSELDLRSLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCAS-- 68
Query: 193 NNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDE 252
+GC+G + +YI G+ +E YPY+ E C ++ + IS Y + D
Sbjct: 69 QHGCHGDTIPRGIEYI-QQNGVVEERSYPYVAREQRC--RRPNSQHYGISNYCQIYPPDV 125
Query: 253 QSLLKALAHQPVSVAIEASGTD---FQFYSG-GVFTGPCGAELD-HGVAAVGYGKSKGSD 307
+ + +AL ++A+ D FQ Y G + G + + H V VGYG ++G D
Sbjct: 126 KQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTIIQHDNGYQPNYHAVNIVGYGSTQGDD 185
Query: 308 YIIVKNSWGPKWGERGY 324
Y IV+NSW WG+ GY
Sbjct: 186 YWIVRNSWDTTWGDSGY 202
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/244 (35%), Positives = 127/244 (52%), Gaps = 38/244 (15%)
Query: 133 LPKSVDWRKKGA---VTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTS--LSEQELID 187
LP S DWR V+PV+NQ SCGSC++F+++ +E +I++ N + LS QE++
Sbjct: 207 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 266
Query: 188 CDTSFNNGCNGGLMDYAFKYIVASG-----GLHKEEDYPYLMEEGTCEDKKEEMEVVTIS 242
C + + GC GG F Y++A GL +E +PY + C+ K++ + S
Sbjct: 267 C-SQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYS-S 319
Query: 243 GYQDVPE-----NDEQSLLKALAHQPVSVAIEASGTDFQFYSGGVF--TG---PCGA-EL 291
Y V N+ L+ + H P++VA E DF Y G++ TG P EL
Sbjct: 320 EYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVY-DDFLHYKKGIYHHTGLRDPFNPFEL 378
Query: 292 -DHGVAAVGYG--KSKGSDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKM--ASI 346
+H V VGYG + G DY IVKNSWG WGE GY R++R T + C I + A+
Sbjct: 379 TNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDE----CAIESIAVAAT 434
Query: 347 PLKK 350
P+ K
Sbjct: 435 PIPK 438
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 101/196 (51%), Gaps = 10/196 (5%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P +D R+ VTP++ QG CGSCWAFS VAA E L+EQEL+DC +
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ-- 68
Query: 194 NGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQ 253
+GC+G + +YI G+ +E Y Y+ E +C ++ + IS Y + +
Sbjct: 69 HGCHGDTIPRGIEYI-QHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNAN 125
Query: 254 SLLKALA--HQPVSVAIEASGTD-FQFYSG-GVFTGPCGAELD-HGVAAVGYGKSKGSDY 308
+ +ALA H ++V I D F+ Y G + G + + H V VGY ++G DY
Sbjct: 126 KIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDY 185
Query: 309 IIVKNSWGPKWGERGY 324
IV+NSW WG+ GY
Sbjct: 186 WIVRNSWDTNWGDNGY 201
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 101/196 (51%), Gaps = 10/196 (5%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P +D R+ VTP++ QG CGSCWAFS VAA E L+EQEL+DC +
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVDCASQ-- 68
Query: 194 NGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQ 253
+GC+G + +YI G+ +E Y Y+ E +C ++ + IS Y + +
Sbjct: 69 HGCHGDTIPRGIEYI-QHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNVN 125
Query: 254 SLLKALA--HQPVSVAIEASGTD-FQFYSG-GVFTGPCGAELD-HGVAAVGYGKSKGSDY 308
+ +ALA H ++V I D F+ Y G + G + + H V VGY ++G DY
Sbjct: 126 KIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDY 185
Query: 309 IIVKNSWGPKWGERGY 324
IV+NSW WG+ GY
Sbjct: 186 WIVRNSWDTNWGDNGY 201
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 100/196 (51%), Gaps = 10/196 (5%)
Query: 134 PKSVDWRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDCDTSFN 193
P +D R+ VTP++ QG CGS WAFS VAA E L+EQEL+DC +
Sbjct: 11 PAEIDLRQMRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVDCASQ-- 68
Query: 194 NGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEGTCEDKKEEMEVVTISGYQDVPENDEQ 253
+GC+G + +YI G+ +E Y Y+ E +C ++ + IS Y + +
Sbjct: 69 HGCHGDTIPRGIEYI-QHNGVVQESYYRYVAREQSC--RRPNAQRFGISNYCQIYPPNAN 125
Query: 254 SLLKALA--HQPVSVAIEASGTD-FQFYSG-GVFTGPCGAELD-HGVAAVGYGKSKGSDY 308
+ +ALA H ++V I D F+ Y G + G + + H V VGY ++G DY
Sbjct: 126 KIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDY 185
Query: 309 IIVKNSWGPKWGERGY 324
IV+NSW WG+ GY
Sbjct: 186 WIVRNSWDTNWGDNGY 201
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 35/228 (15%)
Query: 133 LPKSVDWRKKGAV---TPVKNQ---GSCGSCWAF-STVAAVEGINQIVSGNLTS--LSEQ 183
LPKS DWR V + +NQ CGSCWA ST A + IN G S LS Q
Sbjct: 36 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 95
Query: 184 ELIDCDTSFNNGCNGG----LMDYAFKYIVASGGLH----KEEDYPYLMEEGTCEDKKEE 235
+IDC + C GG + DYA ++ + + K+++ + GTC + KE
Sbjct: 96 NVIDCGNA--GSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKEC 153
Query: 236 MEVVTIS----GYQDVPENDEQSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAE- 290
+ + G E+ + + A+ P+S I A+ Y+GG++ AE
Sbjct: 154 HAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMAT-ERLANYTGGIY-----AEY 207
Query: 291 -----LDHGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRMKRNTGK 333
++H V+ G+G S G++Y IV+NSWG WGERG++R+ +T K
Sbjct: 208 QDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYK 255
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 111/228 (48%), Gaps = 35/228 (15%)
Query: 133 LPKSVDWRKKGAV---TPVKNQ---GSCGSCWAF-STVAAVEGINQIVSGNLTS--LSEQ 183
LPKS DWR V + +NQ CGSCWA ST A + IN G S LS Q
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 184 ELIDCDTSFNNGCNGG----LMDYAFKYIVASGGLH----KEEDYPYLMEEGTCEDKKEE 235
+IDC + C GG + DYA ++ + + K+++ + GTC + KE
Sbjct: 61 NVIDCGNA--GSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKEC 118
Query: 236 MEVVTIS----GYQDVPENDEQSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAE- 290
+ + G E+ + + A+ P+S I A+ Y+GG++ AE
Sbjct: 119 HAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMAT-ERLANYTGGIY-----AEY 172
Query: 291 -----LDHGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRMKRNTGK 333
++H V+ G+G S G++Y IV+NSWG WGERG++R+ +T K
Sbjct: 173 QDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYK 220
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 108/263 (41%), Gaps = 43/263 (16%)
Query: 121 PSAEFSYRDVKA-LPKSVD----WRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSG 175
P F+ + +A LP S D W + + +Q +CGSCWA + +A+ + G
Sbjct: 81 PKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGG 140
Query: 176 -NLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEG------- 227
+S +L+ C + +GCNGG D A+ Y +S GL + PY
Sbjct: 141 VQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSK 199
Query: 228 ------------------TCEDKKEEMEVVTISGYQDVPENDEQSLLKALAHQ-PVSVAI 268
TC+D + VV + E ++ L + P VA
Sbjct: 200 NGYPPCSQFNFDTPKCNYTCDDPT--IPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF 257
Query: 269 EASGTDFQFYSGGVFTGPCGAELD-HGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRM 327
+ DF Y+ GV+ G L H V VG+G S G Y + NSW +WG GY +
Sbjct: 258 DVY-EDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLI 316
Query: 328 KRNTGKPEGLCGINK--MASIPL 348
+R + + CGI A IPL
Sbjct: 317 RRGSSE----CGIEDGGSAGIPL 335
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 109/263 (41%), Gaps = 43/263 (16%)
Query: 121 PSAEFSYRDVKA-LPKSVD----WRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSG 175
P F+ + +A LP S D W + + +Q +CGSCWA + +A+ + G
Sbjct: 59 PKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGG 118
Query: 176 -NLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLME--------- 225
+S +L+ C + +GCNGG D A+ Y +S GL + PY
Sbjct: 119 VQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSK 177
Query: 226 ----------------EGTCEDKKEEMEVVTISGYQDVPENDEQSLLKALAHQ-PVSVAI 268
+ TC+D + VV + E ++ L + P VA
Sbjct: 178 NGYPPCSQFNFDTPKCDYTCDDPT--IPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF 235
Query: 269 EASGTDFQFYSGGVFTGPCGAELD-HGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRM 327
+ DF Y+ GV+ G L H V VG+G S G Y + NSW +WG GY +
Sbjct: 236 DVY-EDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLI 294
Query: 328 KRNTGKPEGLCGINK--MASIPL 348
+R + + CGI A IPL
Sbjct: 295 RRGSSE----CGIEDGGSAGIPL 313
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/263 (27%), Positives = 108/263 (41%), Gaps = 43/263 (16%)
Query: 121 PSAEFSYRDVKA-LPKSVD----WRKKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSG 175
P F+ + +A LP S D W + + +Q +CGSCWA + +A+ + G
Sbjct: 58 PKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQSACGSCWAVAAASAMSDRFCTMGG 117
Query: 176 -NLTSLSEQELIDCDTSFNNGCNGGLMDYAFKYIVASGGLHKEEDYPYLMEEG------- 227
+S +L+ C + +GCNGG D A+ Y +S GL + PY
Sbjct: 118 VQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYF-SSTGLVSDYCQPYPFPHCSHHSKSK 176
Query: 228 ------------------TCEDKKEEMEVVTISGYQDVPENDEQSLLKALAHQ-PVSVAI 268
TC+D + VV + E ++ L + P VA
Sbjct: 177 NGYPPCSQFNFDTPKCNYTCDDPT--IPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF 234
Query: 269 EASGTDFQFYSGGVFTGPCGAELD-HGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRM 327
+ DF Y+ GV+ G L H V VG+G S G Y + NSW +WG GY +
Sbjct: 235 DVY-EDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLI 293
Query: 328 KRNTGKPEGLCGINK--MASIPL 348
+R + + CGI A IPL
Sbjct: 294 RRGSSE----CGIEDGGSAGIPL 312
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 100/236 (42%), Gaps = 40/236 (16%)
Query: 133 LPKSVDWRKK----GAVTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTS--LSEQELI 186
+P S D RKK ++ +++Q CGSCWAF V A+ + I SG + LS +L+
Sbjct: 3 IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62
Query: 187 DCDTSFNNGCNGGLMDYAFKYIVASG---GLHKE-----EDYPYLMEEGTCEDK------ 232
C S GC GG++ A+ Y V G G KE E YP+ E + K
Sbjct: 63 SCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGS 122
Query: 233 ---KEEMEVVTISGYQDVP--------------ENDEQSLLK-ALAHQPVSVAIEASGTD 274
K T P +NDE+++ K + + PV D
Sbjct: 123 KIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVY-ED 181
Query: 275 FQFYSGGVFTGPCGAEL-DHGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRMKR 329
F Y G++ G L H + +G+G + Y ++ NSW WGE GY R+ R
Sbjct: 182 FLNYKSGIYKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVR 237
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 136/312 (43%), Gaps = 55/312 (17%)
Query: 79 IDQRNKEVTSYWLGLNEF-ADMSH-EEFKNKYLGLKPQFPTRRQPSAEFSYRDVKALPKS 136
++ NK T++ G N + DMS+ + +LG P+ P R F+ D+K LP S
Sbjct: 15 VNYVNKRNTTWQAGHNFYNVDMSYLKRLCGTFLG-GPKPPQR----VMFT-EDLK-LPAS 67
Query: 137 VDWRKKGAVTP----VKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSL---SEQELIDCD 189
D R++ P +++QGSCGSCWAF V A+ I + S+ +E L C
Sbjct: 68 FDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCG 127
Query: 190 TSFNNGCNGGLMDYAFKYI----VASGGLHKEE--DYPYLM-----------EEGTCEDK 232
+ +GCNGG A+ + + SGGL++ PY + T E
Sbjct: 128 SMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCTGEGD 187
Query: 233 KEEMEVVTISGY-----QD---------VPENDEQSLLKALAHQPVSVAIEASGTDFQFY 278
+ + GY QD V +++ + + + PV A +DF Y
Sbjct: 188 TPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-SDFLLY 246
Query: 279 SGGVFTGPCGAEL-DHGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRMKRNTGKPEGL 337
GV+ G + H + +G+G G+ Y +V NSW WG+ G+ ++ R +
Sbjct: 247 KSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG----QDH 302
Query: 338 CGINK--MASIP 347
CGI +A IP
Sbjct: 303 CGIESEVVAGIP 314
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 133/312 (42%), Gaps = 55/312 (17%)
Query: 79 IDQRNKEVTSYWLGLNEF-ADMSH-EEFKNKYLGLKPQFPTRRQPSAEFSYRDVKALPKS 136
I+ NK+ T++ G N + D+S+ ++ LG P+ P R S + + LP+S
Sbjct: 14 INYINKQNTTWQAGRNFYNVDISYLKKLCGTVLG-GPKLPERVGFSEDIN------LPES 66
Query: 137 VDWRKKGAVTP----VKNQGSCGSCWAFSTVAAVEG---INQIVSGNLTSLSEQELIDCD 189
D R++ + P +++QGSCGS WAF V A+ I+ N+ +E L C
Sbjct: 67 FDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCG 126
Query: 190 TSFNNGCNGGLMDYAFKYI----VASGGL-----------------HKEEDYPYLMEEGT 228
+GCNGG A+ + + SGG+ H P EG
Sbjct: 127 IQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCTGEGD 186
Query: 229 CEDKKEEMEVVTISGYQD----------VPENDEQSLLKALAHQPVSVAIEASGTDFQFY 278
+ E + Y++ V +++++ + + + PV A +DF Y
Sbjct: 187 TPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF-SDFLTY 245
Query: 279 SGGVFTGPCGAELD-HGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRMKRNTGKPEGL 337
GV+ G + H + +G+G G Y +V NSW WG+ G+ ++ R E
Sbjct: 246 KSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRG----ENH 301
Query: 338 CGINK--MASIP 347
CGI +A IP
Sbjct: 302 CGIESEIVAGIP 313
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 108/256 (42%), Gaps = 46/256 (17%)
Query: 133 LPKSVDWRKKGAVTP----VKNQGSCGSCWAFSTVAAVEG---INQIVSGNLTSLSEQEL 185
LP+S D R++ + P +++QGSCGSCWAF V A+ I+ N+ +E L
Sbjct: 7 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 66
Query: 186 IDCDTSFNNGCNGGLMDYAFKYI----VASGGL-----------------HKEEDYPYLM 224
C +GCNGG A+ + + SGG+ H P
Sbjct: 67 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 126
Query: 225 EEGTCEDKKEEMEVVTISGYQD----------VPENDEQSLLKALAHQPVSVAIEASGTD 274
EG + E + Y++ V +++++ + + + PV A +D
Sbjct: 127 GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF-SD 185
Query: 275 FQFYSGGVFTGPCGAELD-HGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRMKRNTGK 333
F Y GV+ G + H + +G+G G Y +V NSW WG+ G+ ++ R
Sbjct: 186 FLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRG--- 242
Query: 334 PEGLCGINK--MASIP 347
E CGI +A IP
Sbjct: 243 -ENHCGIESEIVAGIP 257
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 109/256 (42%), Gaps = 46/256 (17%)
Query: 133 LPKSVDWRKKGAVTP----VKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSL---SEQEL 185
LP S D R++ P +++QGSCGSCWAF V A+ I + S+ +E L
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 186 IDCDTSFNNGCNGGLMDYAFKYI----VASGGLHKEE--DYPYLM-----------EEGT 228
C + +GCNGG A+ + + SGGL++ PY + T
Sbjct: 62 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 121
Query: 229 CEDKKEEMEVVTISGY-----QD---------VPENDEQSLLKALAHQPVSVAIEASGTD 274
E + + GY QD V +++ + + + PV A +D
Sbjct: 122 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-SD 180
Query: 275 FQFYSGGVFTGPCGAEL-DHGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRMKRNTGK 333
F Y GV+ G + H + +G+G G+ Y +V NSW WG+ G+ ++ R
Sbjct: 181 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG--- 237
Query: 334 PEGLCGINK--MASIP 347
+ CGI +A IP
Sbjct: 238 -QDHCGIESEVVAGIP 252
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/256 (26%), Positives = 108/256 (42%), Gaps = 46/256 (17%)
Query: 133 LPKSVDWRKKGAVTP----VKNQGSCGSCWAFSTVAAVEG---INQIVSGNLTSLSEQEL 185
LP+S D R++ + P +++QGSCGSCWAF V A+ I+ N+ +E L
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 186 IDCDTSFNNGCNGGLMDYAFKYI----VASGGL-----------------HKEEDYPYLM 224
C +GCNGG A+ + + SGG+ H P
Sbjct: 61 TCCGIQCGDGCNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARPPCT 120
Query: 225 EEGTCEDKKEEMEVVTISGYQD----------VPENDEQSLLKALAHQPVSVAIEASGTD 274
EG + E + Y++ V +++++ + + + PV A +D
Sbjct: 121 GEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF-SD 179
Query: 275 FQFYSGGVFTGPCGAELD-HGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRMKRNTGK 333
F Y GV+ G + H + +G+G G Y +V NSW WG+ G+ ++ R
Sbjct: 180 FLTYKSGVYKHEAGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRG--- 236
Query: 334 PEGLCGINK--MASIP 347
E CGI +A IP
Sbjct: 237 -ENHCGIESEIVAGIP 251
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 85/166 (51%), Gaps = 23/166 (13%)
Query: 133 LPKSVDWRKKGA---VTPVKNQGSCGSCWAFSTVAAVEGINQIVSGNLTS--LSEQELID 187
LP S DWR V+PV+NQ SCGSC++F+++ +E +I++ N + LS QE++
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 188 CDTSFNNGCNGGLMDYAFKYIVASG-----GLHKEEDYPYLMEEGTCEDKKEEMEVVTIS 242
C + + GC GG F Y++A GL +E +PY + C+ K++ + S
Sbjct: 61 C-SQYAQGCEGG-----FPYLIAGKYAQDFGLVEEACFPYTGTDSPCKMKEDCFRYYS-S 113
Query: 243 GYQDVPE-----NDEQSLLKALAHQPVSVAIEASGTDFQFYSGGVF 283
Y V N+ L+ + H P++VA E DF Y G++
Sbjct: 114 EYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVY-DDFLHYKKGIY 158
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 109/256 (42%), Gaps = 46/256 (17%)
Query: 133 LPKSVDWRKKGAVTP----VKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSL---SEQEL 185
LP S D R++ P +++QGSCGSCWAF V A+ I + S+ +E L
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 186 IDCDTSFNNGCNGGLMDYAFKYI----VASGGLHKEE--DYPYLM-----------EEGT 228
C + +GCNGG A+ + + SGGL++ PY + T
Sbjct: 63 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 122
Query: 229 CEDKKEEMEVVTISGY-----QD---------VPENDEQSLLKALAHQPVSVAIEASGTD 274
E + + GY QD V +++ + + + PV A +D
Sbjct: 123 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-SD 181
Query: 275 FQFYSGGVFTGPCGAEL-DHGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRMKRNTGK 333
F Y GV+ G + H + +G+G G+ Y +V NSW WG+ G+ ++ R
Sbjct: 182 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG--- 238
Query: 334 PEGLCGINK--MASIP 347
+ CGI +A IP
Sbjct: 239 -QDHCGIESEVVAGIP 253
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 109/256 (42%), Gaps = 46/256 (17%)
Query: 133 LPKSVDWRKKGAVTP----VKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSL---SEQEL 185
LP S D R++ P +++QGSCGSCWAF V A+ I + S+ +E L
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 186 IDCDTSFNNGCNGGLMDYAFKYI----VASGGLHKEE--DYPYLM-----------EEGT 228
C + +GCNGG A+ + + SGGL++ PY + T
Sbjct: 61 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 229 CEDKKEEMEVVTISGY-----QD---------VPENDEQSLLKALAHQPVSVAIEASGTD 274
E + + GY QD V +++ + + + PV A +D
Sbjct: 121 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-SD 179
Query: 275 FQFYSGGVFTGPCGAEL-DHGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRMKRNTGK 333
F Y GV+ G + H + +G+G G+ Y +V NSW WG+ G+ ++ R
Sbjct: 180 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG--- 236
Query: 334 PEGLCGINK--MASIP 347
+ CGI +A IP
Sbjct: 237 -QDHCGIESEVVAGIP 251
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 108/256 (42%), Gaps = 46/256 (17%)
Query: 133 LPKSVDWRKKGAVTP----VKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSL---SEQEL 185
LP S D R++ P +++QGSCGS WAF V A+ I + S+ +E L
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 186 IDCDTSFNNGCNGGLMDYAFKYI----VASGGLHKEE--DYPYLMEEG-----------T 228
C + +GCNGG A+ + + SGGL++ PY + T
Sbjct: 67 TCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCT 126
Query: 229 CEDKKEEMEVVTISGY-----QD---------VPENDEQSLLKALAHQPVSVAIEASGTD 274
E + + GY QD V +++ + + + PV A +D
Sbjct: 127 GEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVY-SD 185
Query: 275 FQFYSGGVFTGPCGAELD-HGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRMKRNTGK 333
F Y GV+ G + H + +G+G G+ Y +V NSW WG+ G+ ++ R
Sbjct: 186 FLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG--- 242
Query: 334 PEGLCGINK--MASIP 347
+ CGI +A IP
Sbjct: 243 -QDHCGIESEVVAGIP 257
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 107/262 (40%), Gaps = 56/262 (21%)
Query: 133 LPKSVDWRKKGAVTP----VKNQGSCGSCWAFSTVAAVEG---------INQIVSGN--L 177
LP+S D R++ P +++QGSCGSCWAF V A+ +N VS L
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 178 TSLSEQELIDCDTSFNNGCNGGLMDYAFKYIVASGGL-----------------HKEEDY 220
T + C+ F +G ++ K + SGGL H
Sbjct: 61 TCCGGECGDGCNGGFPSG----AWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSR 116
Query: 221 PYLMEEG-------TCED----KKEEMEVVTISGYQDVPENDEQSLLKALAHQPVSVAIE 269
P EG TCE +E + S Y V N+++ + + + PV A
Sbjct: 117 PPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYS-VANNEKEIMAEIYKNGPVEGAFS 175
Query: 270 ASGTDFQFYSGGVFTGPCGAELD-HGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRMK 328
+DF Y GV+ G + H + +G+G G+ Y +V NSW WG+ G+ ++
Sbjct: 176 VY-SDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKIL 234
Query: 329 RNTGKPEGLCGINK--MASIPL 348
R + CGI +A +P
Sbjct: 235 RG----QDHCGIESEIVAGMPC 252
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 106
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 48 FESWMSKHGKTYKCIEEKLHRFEIFKENLKHIDQRNKEVTSYWLGLNEFADMSHEEFKNK 107
F S+ + + K+Y EEK R+ IFK NL +I N++ SY L +N F D+S +EF+ K
Sbjct: 25 FSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLSRDEFRRK 84
Query: 108 YLGLKP 113
YLG K
Sbjct: 85 YLGFKK 90
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 106/258 (41%), Gaps = 48/258 (18%)
Query: 133 LPKSVDWRKKGAVTP----VKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSL--SEQELI 186
LP+S D R++ P +++QGSCGSCWAF V A+ I S ++ S ++++
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDML 60
Query: 187 DCDTSFNNGCN-----GGLMDYAFKYIVASGGL-----------------HKEEDYPYLM 224
C G ++ K + SGGL H P
Sbjct: 61 TCCGGECGDGCNGGEPSGAWNFWTKKGLVSGGLYNSHVGCRPYSIPPCEHHVNGSRPPCT 120
Query: 225 EEG-------TCED----KKEEMEVVTISGYQDVPENDEQSLLKALAHQPVSVAIEASGT 273
EG TCE +E + S Y V N+++ + + + PV A +
Sbjct: 121 GEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYS-VANNEKEIMAEIYKNGPVEGAFSVY-S 178
Query: 274 DFQFYSGGVFTGPCGAELD-HGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRMKRNTG 332
DF Y GV+ G + H + +G+G G+ Y +V NSW WG+ G+ ++ R
Sbjct: 179 DFLLYKSGVYQHVSGEIMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG-- 236
Query: 333 KPEGLCGINK--MASIPL 348
+ CGI +A +P
Sbjct: 237 --QDHCGIESEIVAGMPC 252
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 54.7 bits (130), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 8/63 (12%)
Query: 292 DHGVAAVGYG--KSKGSDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKM--ASIP 347
+H V VGYG + G DY IVKNSWG WGE GY R++R T + C I + A+ P
Sbjct: 10 NHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDE----CAIESIAVAATP 65
Query: 348 LKK 350
+ K
Sbjct: 66 IPK 68
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 35/215 (16%)
Query: 148 VKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDC-DTSFNNGCNGGLMDYAFK 206
V++QG+C + W F++ +E I + T +S + +C + C+ G F
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 84
Query: 207 YIVAS-GGLHKEEDYPY------------------LMEEGTCEDKKEEMEVVTISGY--- 244
I+ G L E +YPY L + G K E + GY
Sbjct: 85 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 144
Query: 245 -QDVPENDEQSLLKALAHQ-----PVSVAIEASGTDFQFYSGGVFTGPCGAEL-DHGVAA 297
+ ++ + +K + + V I+A +SG CG + DH V
Sbjct: 145 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKNLCGDDTADHAVNI 204
Query: 298 VGYGKSKGSD-----YIIVKNSWGPKWGERGYIRM 327
VGYG S+ Y IV+NSWGP WG+ GY ++
Sbjct: 205 VGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 239
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 87/215 (40%), Gaps = 35/215 (16%)
Query: 148 VKNQGSCGSCWAFSTVAAVEGINQIVSGNLTSLSEQELIDC-DTSFNNGCNGGLMDYAFK 206
V++QG+C + W F++ +E I + T +S + +C + C+ G F
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 83
Query: 207 YIVAS-GGLHKEEDYPY------------------LMEEGTCEDKKEEMEVVTISGY--- 244
I+ G L E +YPY L + G K E + GY
Sbjct: 84 QIIEDYGFLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAY 143
Query: 245 -QDVPENDEQSLLKALAHQ-----PVSVAIEASGTDFQFYSGGVFTGPCGAEL-DHGVAA 297
+ ++ + +K + + V I+A +SG CG + DH V
Sbjct: 144 ESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQNLCGDDTADHAVNI 203
Query: 298 VGYGKSKGSD-----YIIVKNSWGPKWGERGYIRM 327
VGYG S+ Y IV+NSWGP WG+ GY ++
Sbjct: 204 VGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKV 238
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 247 VPENDEQSLLKALAHQPVSVAIEASGTDFQFYSGGVFTGPCGAELD-HGVAAVGYGKSKG 305
V N+++ + + + PV A +DF Y GV+ G + H + +G+G G
Sbjct: 105 VANNEKEIMAEIYKNGPVEGAFSVY-SDFLLYKSGVYQHVSGEIMGGHAIRILGWGVENG 163
Query: 306 SDYIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGI 340
+ Y +V NSW WG+ G+ ++ R + CGI
Sbjct: 164 TPYWLVGNSWNTDWGDNGFFKILRG----QDHCGI 194
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 39/201 (19%)
Query: 181 SEQELIDCDTSFNNGCNGGLMDYAFKYI----VASGGLHKEE--DYPYLMEEG------- 227
+E L C + +GCNGG A+ + + SGGL++ PY +
Sbjct: 7 AEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGS 66
Query: 228 ----TCEDKKEEMEVVTISGY-----QD---------VPENDEQSLLKALAHQPVSVAIE 269
T E + + GY QD V +++ + + + PV A
Sbjct: 67 RPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFS 126
Query: 270 ASGTDFQFYSGGVFTGPCGAELD-HGVAAVGYGKSKGSDYIIVKNSWGPKWGERGYIRMK 328
+DF Y GV+ G + H + +G+G G+ Y +V NSW WG+ G+ ++
Sbjct: 127 VY-SDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKIL 185
Query: 329 RNTGKPEGLCGINK--MASIP 347
R + CGI +A IP
Sbjct: 186 RG----QDHCGIESEVVAGIP 202
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 133 LPKSVDWRKKGAVTP----VKNQGSCGSCWAFSTVAAV 166
LP S D R++ P +++QGSCGSCWAF V A+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 25/38 (65%), Gaps = 4/38 (10%)
Query: 133 LPKSVDWRKKGAVTP----VKNQGSCGSCWAFSTVAAV 166
LP+S D R++ P +++QGSCGSCWAF V A+
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAI 38
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 308 YIIVKNSWGPKWGERGYIRMKRNTGKPEGLCGINKMASIP 347
Y +VKNSWG +WG GY++M ++ CGI AS P
Sbjct: 4 YWLVKNSWGEEWGMGGYVKMAKDR---RNHCGIASAASYP 40
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
Antigent-2(Ctla Protein), Crammer At Ph 6.0
Length = 80
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 49 ESWM---SKHGKTYKCIEEKLHRFEIFKENLKHIDQRNKEV----TSYWLGLNEFADMSH 101
E W+ SK K Y+ EE L R I+ E+ I++ N++ ++ +G+N AD++
Sbjct: 8 EEWVEYKSKFDKNYEA-EEDLMRRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTP 66
Query: 102 EEFKNK 107
EEF +
Sbjct: 67 EEFAQR 72
>pdb|2QVT|A Chain A, Structure Of Melampsora Lini Avirulence Protein, Avrl567-D
Length = 150
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 203 YAFKYIVASGGLHKEEDYPYLM---EEGTCEDKKEEMEVVTISGYQDVPENDEQ 253
YA IV+ GG+H ED P + EG + VT+SG +V ++EQ
Sbjct: 10 YAVLSIVSLGGIHAMEDVPAELTGVSEGYTRFYRSPTASVTLSGLVNVKWDNEQ 63
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 141 KKGAVTPVKNQGSCGSCWAFSTVAAVE 167
K+ +T VKNQ G+CW +S+ + +E
Sbjct: 18 KENPITSVKNQNRAGTCWCYSSYSFLE 44
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,696,189
Number of Sequences: 62578
Number of extensions: 467009
Number of successful extensions: 1661
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1239
Number of HSP's gapped (non-prelim): 130
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 52 (24.6 bits)