BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018782
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 10/132 (7%)
Query: 89 MC-KAGNIDEAHGMLREMRSIGAEPDAFSYSIFIH------AFCEANDIHSVFRVLDSMK 141
MC K G++ EA + E R G + + Y++ ++ A E++ + R D K
Sbjct: 35 MCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFK 94
Query: 142 RY---NLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRA 198
+ +VPN T+ R + E A+ ++ +M G P SY L C +
Sbjct: 95 QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG 154
Query: 199 EVNMALRLITRM 210
+ + A + M
Sbjct: 155 DADKAYEVDAHM 166
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/177 (18%), Positives = 72/177 (40%), Gaps = 9/177 (5%)
Query: 58 GELSEARKLFDEMLERKCPVDILAHN------SLLEAMCKAG---NIDEAHGMLREMRSI 108
G++ EA +L+DE + +N SL EA ++ + + ++M
Sbjct: 40 GDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD 99
Query: 109 GAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEA 168
P+ +++ +D F ++ MK + + P + +Y + C+ ++A
Sbjct: 100 KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159
Query: 169 YQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMV 225
Y++ M+E P+E A+L D + + + R+ + T++M+
Sbjct: 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMI 216
>pdb|3FF1|A Chain A, Structure Of Glucose 6-Phosphate Isomerase From
Staphylococcus Aureus
pdb|3FF1|B Chain B, Structure Of Glucose 6-Phosphate Isomerase From
Staphylococcus Aureus
Length = 446
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 243 ESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKY-FEMMVDEGIPPYSSTVEMLRNRLV 301
E + +G YPS + Y+ +H L + ++E ++ FE +V P Y T+E + L
Sbjct: 290 EGKDFKGIYPSSANYTTDLHSLGQ---YVQEGRRFLFETVVKVNHPKYDITIEKDSDDLD 346
Query: 302 GLGFL 306
GL +L
Sbjct: 347 GLNYL 351
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 9/127 (7%)
Query: 86 LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIH------AFCEANDIHSVFRVLDS 139
L+ K G++ EA + E R G + + Y++ ++ A E++ + R D
Sbjct: 33 LDXCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDI 92
Query: 140 MKRY---NLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD 196
K+ +VPN T+ R + E A+ + + G P SY L C
Sbjct: 93 FKQXIVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCR 152
Query: 197 RAEVNMA 203
+ + + A
Sbjct: 153 KGDADKA 159
>pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Y Chain Y, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|MM Chain m, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|1 Chain 1, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|K Chain K, Mouse Constitutive 20s Proteasome
pdb|3UNE|Y Chain Y, Mouse Constitutive 20s Proteasome
pdb|3UNE|MM Chain m, Mouse Constitutive 20s Proteasome
pdb|3UNE|1 Chain 1, Mouse Constitutive 20s Proteasome
Length = 205
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 148 NVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYH 194
+V+ Y + R + KVEEAY L I + D +S A+ YH
Sbjct: 132 SVYAYGVMDRGYSYDLKVEEAYDLARRAIYQATYRDAYSGGAVNLYH 178
>pdb|3IFS|A Chain A, 2.0 Angstrom Resolution Crystal Structure Of
Glucose-6-Phosphate Isomerase (Pgi) From Bacillus
Anthracis.
pdb|3IFS|B Chain B, 2.0 Angstrom Resolution Crystal Structure Of
Glucose-6-Phosphate Isomerase (Pgi) From Bacillus
Anthracis.
pdb|3IFS|C Chain C, 2.0 Angstrom Resolution Crystal Structure Of
Glucose-6-Phosphate Isomerase (Pgi) From Bacillus
Anthracis.
pdb|3IFS|D Chain D, 2.0 Angstrom Resolution Crystal Structure Of
Glucose-6-Phosphate Isomerase (Pgi) From Bacillus
Anthracis.
pdb|3IFS|E Chain E, 2.0 Angstrom Resolution Crystal Structure Of
Glucose-6-Phosphate Isomerase (Pgi) From Bacillus
Anthracis.
pdb|3IFS|F Chain F, 2.0 Angstrom Resolution Crystal Structure Of
Glucose-6-Phosphate Isomerase (Pgi) From Bacillus
Anthracis
Length = 453
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 243 ESMEKRGFYPSVSTYSVMVHGLCK--KKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL 300
E +++G +PS + +S +H L + ++G+ + FE ++ G + T+E N L
Sbjct: 296 EGKDQKGIFPSSANFSTDLHSLGQYVQEGRRD----LFETVLKVGKSTHELTIESEENDL 351
Query: 301 VGLGFL 306
GL +L
Sbjct: 352 DGLNYL 357
>pdb|4GDY|A Chain A, Kynurenine Aminotransferase Ii Inhibitors
pdb|4GDY|B Chain B, Kynurenine Aminotransferase Ii Inhibitors
pdb|4GE4|A Chain A, Kynurenine Aminotransferase Ii Inhibitors
pdb|4GE4|B Chain B, Kynurenine Aminotransferase Ii Inhibitors
pdb|4GE9|A Chain A, Kynurenine Aminotransferase Ii Inhibitors
pdb|4GE9|B Chain B, Kynurenine Aminotransferase Ii Inhibitors
pdb|4GE9|C Chain C, Kynurenine Aminotransferase Ii Inhibitors
pdb|4GE9|D Chain D, Kynurenine Aminotransferase Ii Inhibitors
Length = 439
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 264 LCKKKGKLEEACKYFEMMVDEGI------PPYSSTVEML 296
LC G + CK FEM+++ G P YS T++ L
Sbjct: 111 LCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSL 149
>pdb|3VK9|A Chain A, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|B Chain B, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|C Chain C, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|D Chain D, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
Length = 216
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 160 CKNEKVEEAYQLLDEMIE 177
KNEKV+EA QLLD+ +E
Sbjct: 127 AKNEKVQEALQLLDKFLE 144
>pdb|3UE8|A Chain A, Kynurenine Aminotransferase Ii Inhibitors
pdb|3UE8|B Chain B, Kynurenine Aminotransferase Ii Inhibitors
Length = 439
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 264 LCKKKGKLEEACKYFEMMVDEGI------PPYSSTVEML 296
LC G + CK FEM+++ G P YS T++ L
Sbjct: 111 LCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSL 149
>pdb|2XH1|A Chain A, Crystal Structure Of Human Kat Ii-Inhibitor Complex
pdb|2XH1|B Chain B, Crystal Structure Of Human Kat Ii-Inhibitor Complex
Length = 425
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 264 LCKKKGKLEEACKYFEMMVDEGI------PPYSSTVEML 296
LC G + CK FEM+++ G P YS T++ L
Sbjct: 111 LCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSL 149
>pdb|2R2N|A Chain A, The Crystal Structure Of Human Kynurenine Aminotransferase
Ii In Complex With Kynurenine
pdb|2R2N|B Chain B, The Crystal Structure Of Human Kynurenine Aminotransferase
Ii In Complex With Kynurenine
pdb|2R2N|C Chain C, The Crystal Structure Of Human Kynurenine Aminotransferase
Ii In Complex With Kynurenine
pdb|2R2N|D Chain D, The Crystal Structure Of Human Kynurenine Aminotransferase
Ii In Complex With Kynurenine
Length = 425
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 264 LCKKKGKLEEACKYFEMMVDEGI------PPYSSTVEML 296
LC G + CK FEM+++ G P YS T++ L
Sbjct: 111 LCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSL 149
>pdb|2VGZ|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii
pdb|2VGZ|B Chain B, Crystal Structure Of Human Kynurenine Aminotransferase Ii
Length = 427
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 264 LCKKKGKLEEACKYFEMMVDEGI------PPYSSTVEML 296
LC G + CK FEM+++ G P YS T++ L
Sbjct: 113 LCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSL 151
>pdb|2QLR|A Chain A, Crystal Structure Of Human Kynurenine Aminotransferase Ii
pdb|2QLR|B Chain B, Crystal Structure Of Human Kynurenine Aminotransferase Ii
pdb|2QLR|C Chain C, Crystal Structure Of Human Kynurenine Aminotransferase Ii
pdb|2QLR|D Chain D, Crystal Structure Of Human Kynurenine Aminotransferase Ii
pdb|3DC1|A Chain A, Crystal Structure Of Kynurenine Aminotransferase Ii
Complex With Alpha-Ketoglutarate
pdb|3DC1|B Chain B, Crystal Structure Of Kynurenine Aminotransferase Ii
Complex With Alpha-Ketoglutarate
pdb|3DC1|C Chain C, Crystal Structure Of Kynurenine Aminotransferase Ii
Complex With Alpha-Ketoglutarate
pdb|3DC1|D Chain D, Crystal Structure Of Kynurenine Aminotransferase Ii
Complex With Alpha-Ketoglutarate
Length = 425
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 264 LCKKKGKLEEACKYFEMMVDEGI------PPYSSTVEML 296
LC G + CK FEM+++ G P YS T++ L
Sbjct: 111 LCVTSGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQSL 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,002,918
Number of Sequences: 62578
Number of extensions: 394689
Number of successful extensions: 938
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 18
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)