Query 018782
Match_columns 350
No_of_seqs 586 out of 1838
Neff 11.9
Searched_HMMs 46136
Date Fri Mar 29 03:59:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.7E-56 3.7E-61 407.3 42.4 333 1-334 463-798 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 7.9E-56 1.7E-60 403.0 42.6 339 8-347 435-776 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.5E-51 3.2E-56 371.7 31.1 335 1-347 149-484 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 8.2E-50 1.8E-54 368.4 32.4 339 2-348 214-648 (857)
5 PLN03081 pentatricopeptide (PP 100.0 7.5E-49 1.6E-53 354.2 30.9 330 5-347 118-448 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 3.3E-48 7.2E-53 357.8 33.4 334 1-342 279-674 (857)
7 PRK11788 tetratricopeptide rep 99.9 1.6E-23 3.5E-28 178.3 34.6 301 17-324 42-352 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 4.2E-23 9.1E-28 194.4 38.7 328 9-347 566-893 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 2.3E-22 4.9E-27 189.5 40.6 312 7-326 462-806 (899)
10 PRK11788 tetratricopeptide rep 99.9 6.1E-22 1.3E-26 168.7 31.7 287 8-306 67-363 (389)
11 PRK15174 Vi polysaccharide exp 99.9 4.7E-20 1E-24 164.8 38.6 306 9-323 75-385 (656)
12 PRK15174 Vi polysaccharide exp 99.9 8.3E-20 1.8E-24 163.3 36.7 303 14-325 46-353 (656)
13 TIGR00990 3a0801s09 mitochondr 99.9 5.7E-18 1.2E-22 151.8 40.3 309 6-320 156-572 (615)
14 TIGR00990 3a0801s09 mitochondr 99.9 2.2E-17 4.8E-22 148.0 38.8 302 13-322 130-499 (615)
15 PRK11447 cellulose synthase su 99.8 6E-17 1.3E-21 154.5 38.6 98 220-320 604-701 (1157)
16 KOG4626 O-linked N-acetylgluco 99.8 8.7E-18 1.9E-22 139.7 25.8 304 20-332 194-498 (966)
17 PRK11447 cellulose synthase su 99.8 2.2E-16 4.7E-21 150.7 38.5 304 17-326 276-673 (1157)
18 PRK10049 pgaA outer membrane p 99.8 3.1E-16 6.7E-21 143.4 37.7 315 8-328 47-431 (765)
19 KOG4626 O-linked N-acetylgluco 99.8 2.6E-17 5.6E-22 136.9 25.9 324 9-341 115-472 (966)
20 PRK10049 pgaA outer membrane p 99.8 1.5E-15 3.2E-20 139.0 38.7 315 7-327 80-464 (765)
21 KOG4422 Uncharacterized conser 99.8 1.2E-14 2.7E-19 116.0 32.1 241 6-250 203-464 (625)
22 PRK10747 putative protoheme IX 99.8 9.7E-15 2.1E-19 123.6 33.6 283 23-318 97-389 (398)
23 TIGR00540 hemY_coli hemY prote 99.8 9.3E-15 2E-19 124.4 33.0 291 21-318 95-398 (409)
24 PRK09782 bacteriophage N4 rece 99.8 6.2E-14 1.4E-18 129.1 38.3 303 9-323 375-710 (987)
25 PRK14574 hmsH outer membrane p 99.8 1.1E-13 2.4E-18 125.1 38.9 303 19-326 111-486 (822)
26 PF13429 TPR_15: Tetratricopep 99.8 2.5E-17 5.5E-22 133.3 14.4 257 51-315 15-273 (280)
27 PF13429 TPR_15: Tetratricopep 99.8 1.2E-17 2.6E-22 135.2 12.0 266 8-283 7-276 (280)
28 PRK14574 hmsH outer membrane p 99.7 2.4E-13 5.3E-18 122.9 38.6 311 9-324 135-518 (822)
29 KOG1126 DNA-binding cell divis 99.7 5.8E-15 1.2E-19 124.0 26.2 291 24-325 333-626 (638)
30 PRK09782 bacteriophage N4 rece 99.7 6.8E-14 1.5E-18 128.9 34.7 272 40-324 471-745 (987)
31 KOG4422 Uncharacterized conser 99.7 9E-14 1.9E-18 111.2 29.0 324 10-339 116-482 (625)
32 COG2956 Predicted N-acetylgluc 99.7 2E-13 4.4E-18 105.3 29.9 299 13-319 39-347 (389)
33 PRK10747 putative protoheme IX 99.7 3.2E-13 7E-18 114.4 32.6 258 17-284 125-390 (398)
34 TIGR00540 hemY_coli hemY prote 99.7 2E-13 4.3E-18 116.3 29.7 283 55-345 95-390 (409)
35 KOG2076 RNA polymerase III tra 99.7 1.1E-12 2.4E-17 114.1 32.8 201 10-212 139-344 (895)
36 KOG1126 DNA-binding cell divis 99.7 5.5E-14 1.2E-18 118.2 23.8 266 11-288 354-624 (638)
37 KOG1155 Anaphase-promoting com 99.7 8.2E-13 1.8E-17 106.7 27.6 308 18-336 235-551 (559)
38 COG3071 HemY Uncharacterized e 99.7 7.1E-12 1.5E-16 99.6 31.8 284 23-317 97-388 (400)
39 KOG2076 RNA polymerase III tra 99.6 4.9E-12 1.1E-16 110.2 32.5 309 7-319 170-512 (895)
40 COG2956 Predicted N-acetylgluc 99.6 1.4E-12 3E-17 100.7 26.1 270 9-284 68-347 (389)
41 KOG2003 TPR repeat-containing 99.6 8.1E-13 1.8E-17 106.8 24.9 279 19-305 428-709 (840)
42 KOG1155 Anaphase-promoting com 99.6 7.4E-12 1.6E-16 101.3 29.9 163 80-246 331-493 (559)
43 PRK12370 invasion protein regu 99.6 4.8E-12 1.1E-16 111.9 30.4 268 41-320 253-536 (553)
44 TIGR02521 type_IV_pilW type IV 99.6 2.5E-12 5.5E-17 101.5 25.9 204 41-248 28-232 (234)
45 PRK12370 invasion protein regu 99.6 3.4E-12 7.3E-17 112.9 28.3 251 24-285 275-536 (553)
46 PF12569 NARP1: NMDA receptor- 99.6 2.5E-11 5.5E-16 104.2 31.9 295 15-318 9-333 (517)
47 COG3071 HemY Uncharacterized e 99.6 4.7E-11 1E-15 95.1 30.6 267 13-289 121-395 (400)
48 TIGR02521 type_IV_pilW type IV 99.6 8.2E-12 1.8E-16 98.6 26.3 204 76-284 28-232 (234)
49 KOG0495 HAT repeat protein [RN 99.6 1.6E-10 3.4E-15 97.8 33.3 309 5-322 474-785 (913)
50 KOG4318 Bicoid mRNA stability 99.6 5.4E-13 1.2E-17 115.7 18.8 242 1-265 16-282 (1088)
51 KOG2002 TPR-containing nuclear 99.6 7.6E-11 1.7E-15 103.7 31.6 302 10-317 270-591 (1018)
52 KOG0495 HAT repeat protein [RN 99.5 1.5E-10 3.2E-15 97.9 31.2 301 12-320 552-881 (913)
53 KOG1129 TPR repeat-containing 99.5 3.6E-12 7.8E-17 98.8 19.3 235 82-323 226-462 (478)
54 KOG2002 TPR-containing nuclear 99.5 5E-11 1.1E-15 104.9 28.7 316 9-331 413-757 (1018)
55 KOG1129 TPR repeat-containing 99.5 4.6E-12 1E-16 98.2 19.3 232 47-285 226-459 (478)
56 KOG1173 Anaphase-promoting com 99.5 1.3E-10 2.8E-15 96.6 27.6 287 7-301 241-533 (611)
57 KOG0547 Translocase of outer m 99.5 1.6E-10 3.4E-15 94.5 27.3 196 117-318 363-565 (606)
58 KOG1174 Anaphase-promoting com 99.5 6.6E-10 1.4E-14 89.1 27.9 312 7-327 191-508 (564)
59 KOG1915 Cell cycle control pro 99.5 4.6E-09 1E-13 85.9 33.1 162 151-318 324-499 (677)
60 PF12569 NARP1: NMDA receptor- 99.4 8.3E-10 1.8E-14 95.0 29.6 262 49-321 9-293 (517)
61 PRK11189 lipoprotein NlpI; Pro 99.4 2.1E-10 4.5E-15 93.3 24.7 96 81-178 66-161 (296)
62 KOG1173 Anaphase-promoting com 99.4 6.4E-10 1.4E-14 92.5 26.5 276 41-323 241-522 (611)
63 KOG1840 Kinesin light chain [C 99.4 1.6E-10 3.6E-15 98.1 23.8 241 41-282 196-477 (508)
64 PF13041 PPR_2: PPR repeat fam 99.4 9.5E-13 2.1E-17 75.7 6.7 49 217-265 1-49 (50)
65 PRK11189 lipoprotein NlpI; Pro 99.4 1.2E-09 2.7E-14 88.8 26.5 228 23-260 39-276 (296)
66 PF13041 PPR_2: PPR repeat fam 99.4 1.3E-12 2.8E-17 75.1 6.6 49 77-125 1-49 (50)
67 KOG4340 Uncharacterized conser 99.4 5.6E-10 1.2E-14 85.8 22.2 305 1-317 1-337 (459)
68 KOG2003 TPR repeat-containing 99.4 8.8E-10 1.9E-14 89.6 23.9 266 53-326 428-696 (840)
69 KOG1915 Cell cycle control pro 99.4 2.5E-08 5.5E-13 81.7 32.2 303 16-326 113-473 (677)
70 COG3063 PilF Tfp pilus assembl 99.4 2.8E-09 6.1E-14 79.0 24.1 197 47-247 38-235 (250)
71 KOG1840 Kinesin light chain [C 99.4 1.2E-09 2.7E-14 92.9 25.5 242 75-317 195-477 (508)
72 COG3063 PilF Tfp pilus assembl 99.4 2.6E-09 5.6E-14 79.2 23.5 206 13-223 38-244 (250)
73 KOG1174 Anaphase-promoting com 99.4 7.6E-09 1.6E-13 83.2 27.9 281 6-296 228-511 (564)
74 KOG0547 Translocase of outer m 99.3 1.7E-09 3.7E-14 88.6 23.5 222 21-247 337-565 (606)
75 cd05804 StaR_like StaR_like; a 99.3 4.7E-08 1E-12 82.5 33.4 301 12-318 8-335 (355)
76 PF04733 Coatomer_E: Coatomer 99.3 6.7E-10 1.5E-14 89.1 19.6 251 56-323 13-269 (290)
77 cd05804 StaR_like StaR_like; a 99.3 3.7E-08 8.1E-13 83.1 29.7 265 18-284 51-336 (355)
78 KOG4318 Bicoid mRNA stability 99.3 6.6E-10 1.4E-14 97.1 17.7 246 39-305 20-286 (1088)
79 KOG1156 N-terminal acetyltrans 99.3 1.5E-07 3.3E-12 80.0 30.7 172 13-189 78-257 (700)
80 KOG4162 Predicted calmodulin-b 99.2 1.7E-07 3.7E-12 81.3 31.3 310 6-321 319-785 (799)
81 KOG0624 dsRNA-activated protei 99.2 2E-07 4.4E-12 73.5 28.5 307 10-324 38-375 (504)
82 KOG1156 N-terminal acetyltrans 99.2 3.5E-07 7.6E-12 77.9 30.8 331 7-347 4-461 (700)
83 KOG3785 Uncharacterized conser 99.2 1.4E-07 3.1E-12 74.6 25.3 97 224-323 398-494 (557)
84 KOG1125 TPR repeat-containing 99.1 3.9E-08 8.5E-13 82.5 21.8 85 21-106 296-380 (579)
85 KOG2047 mRNA splicing factor [ 99.1 2.3E-06 5.1E-11 73.1 31.5 308 13-330 105-517 (835)
86 PLN02789 farnesyltranstransfer 99.1 3.9E-07 8.5E-12 74.3 26.5 213 14-231 41-267 (320)
87 PF04733 Coatomer_E: Coatomer 99.1 6.7E-09 1.5E-13 83.4 15.4 240 86-340 8-251 (290)
88 KOG1070 rRNA processing protei 99.1 4.2E-07 9E-12 83.9 27.1 229 78-312 1457-1693(1710)
89 KOG0548 Molecular co-chaperone 99.1 2.2E-06 4.9E-11 71.6 28.7 94 227-323 366-459 (539)
90 KOG2047 mRNA splicing factor [ 99.0 6.4E-06 1.4E-10 70.6 31.3 240 8-250 167-508 (835)
91 KOG2376 Signal recognition par 99.0 7.3E-06 1.6E-10 69.5 30.9 97 13-109 15-140 (652)
92 KOG4340 Uncharacterized conser 99.0 2.3E-07 5E-12 71.8 20.4 280 46-336 12-322 (459)
93 KOG1914 mRNA cleavage and poly 99.0 5.2E-06 1.1E-10 69.6 29.0 97 220-319 367-464 (656)
94 PLN02789 farnesyltranstransfer 99.0 1.8E-06 4E-11 70.4 26.4 136 52-191 45-183 (320)
95 TIGR03302 OM_YfiO outer membra 99.0 1.6E-07 3.4E-12 74.2 20.0 60 154-213 171-232 (235)
96 KOG1128 Uncharacterized conser 99.0 6E-08 1.3E-12 83.6 18.0 223 5-247 393-615 (777)
97 KOG1070 rRNA processing protei 99.0 1.2E-06 2.5E-11 81.1 27.0 217 32-253 1446-1668(1710)
98 KOG1125 TPR repeat-containing 99.0 3.4E-07 7.3E-12 77.1 20.8 254 51-312 292-564 (579)
99 PRK04841 transcriptional regul 98.9 6.8E-06 1.5E-10 78.4 31.9 303 15-318 414-759 (903)
100 TIGR03302 OM_YfiO outer membra 98.9 5.2E-07 1.1E-11 71.3 20.1 187 112-320 31-233 (235)
101 COG5010 TadD Flp pilus assembl 98.9 3.6E-07 7.8E-12 69.5 17.8 168 40-212 63-230 (257)
102 PRK14720 transcript cleavage f 98.9 1.1E-06 2.3E-11 80.1 23.7 222 41-301 28-268 (906)
103 PRK14720 transcript cleavage f 98.9 1.9E-06 4.1E-11 78.5 24.8 147 9-176 30-176 (906)
104 PF12854 PPR_1: PPR repeat 98.9 2.6E-09 5.7E-14 55.1 3.9 33 4-36 1-33 (34)
105 KOG0624 dsRNA-activated protei 98.9 1.7E-05 3.7E-10 63.0 27.1 272 7-285 66-371 (504)
106 KOG1128 Uncharacterized conser 98.9 2.4E-06 5.3E-11 74.0 22.8 220 75-317 394-614 (777)
107 PRK10370 formate-dependent nit 98.9 1.2E-06 2.5E-11 66.6 18.7 120 162-285 52-174 (198)
108 COG5010 TadD Flp pilus assembl 98.8 2.3E-06 5E-11 65.2 19.3 165 78-247 66-230 (257)
109 PRK15359 type III secretion sy 98.8 2.6E-07 5.6E-12 66.5 13.7 96 47-144 27-122 (144)
110 PRK15179 Vi polysaccharide bio 98.8 1.8E-06 3.8E-11 77.7 21.5 148 38-189 80-227 (694)
111 PRK10370 formate-dependent nit 98.8 6E-07 1.3E-11 68.2 16.0 160 18-193 24-186 (198)
112 KOG4162 Predicted calmodulin-b 98.8 7.3E-05 1.6E-09 65.6 30.2 285 39-328 318-758 (799)
113 PRK15359 type III secretion sy 98.8 1.2E-06 2.6E-11 63.0 16.7 109 65-179 14-122 (144)
114 KOG3081 Vesicle coat complex C 98.8 2.2E-05 4.7E-10 60.1 23.6 118 121-248 115-236 (299)
115 PRK04841 transcriptional regul 98.8 7.9E-05 1.7E-09 71.2 33.1 298 20-318 384-719 (903)
116 PF12854 PPR_1: PPR repeat 98.8 1.1E-08 2.3E-13 52.8 4.0 31 215-245 3-33 (34)
117 KOG3081 Vesicle coat complex C 98.8 1E-05 2.2E-10 61.9 20.5 254 52-323 16-275 (299)
118 PRK15179 Vi polysaccharide bio 98.8 1.4E-06 3.1E-11 78.3 18.7 147 6-155 82-228 (694)
119 KOG3060 Uncharacterized conser 98.7 1.3E-05 2.8E-10 60.9 19.6 190 22-215 24-222 (289)
120 KOG2053 Mitochondrial inherita 98.7 0.00019 4.2E-09 64.2 33.2 226 21-250 20-257 (932)
121 TIGR02552 LcrH_SycD type III s 98.7 2.3E-06 5E-11 61.1 14.5 101 41-143 14-114 (135)
122 KOG2376 Signal recognition par 98.7 0.00018 3.9E-09 61.4 28.1 302 22-331 91-499 (652)
123 TIGR02552 LcrH_SycD type III s 98.6 2.1E-06 4.6E-11 61.3 13.4 105 11-118 18-122 (135)
124 KOG3060 Uncharacterized conser 98.6 0.00011 2.4E-09 56.0 23.4 188 57-248 25-220 (289)
125 KOG0985 Vesicle coat protein c 98.6 0.00042 9E-09 63.1 28.3 158 148-332 1103-1260(1666)
126 COG4783 Putative Zn-dependent 98.6 0.00018 3.8E-09 60.1 24.3 236 19-284 211-454 (484)
127 PF09976 TPR_21: Tetratricopep 98.6 8.2E-06 1.8E-10 58.9 15.0 87 86-174 55-143 (145)
128 COG4783 Putative Zn-dependent 98.6 0.0001 2.2E-09 61.5 22.6 182 24-212 251-436 (484)
129 KOG3785 Uncharacterized conser 98.5 0.00029 6.3E-09 56.5 27.3 159 17-178 29-214 (557)
130 KOG1127 TPR repeat-containing 98.5 6.6E-05 1.4E-09 67.8 21.0 162 12-176 494-657 (1238)
131 KOG3617 WD40 and TPR repeat-co 98.5 0.0002 4.3E-09 63.7 23.3 208 10-244 757-992 (1416)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.2E-05 2.6E-10 67.1 15.4 129 43-177 168-296 (395)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.4E-05 3E-10 66.8 15.6 127 79-211 169-295 (395)
134 KOG2053 Mitochondrial inherita 98.5 0.00077 1.7E-08 60.5 26.4 224 54-285 19-256 (932)
135 PF09976 TPR_21: Tetratricopep 98.4 5.4E-05 1.2E-09 54.7 15.7 124 13-139 15-143 (145)
136 KOG3617 WD40 and TPR repeat-co 98.4 4.3E-05 9.3E-10 67.7 17.1 241 42-317 724-994 (1416)
137 KOG0548 Molecular co-chaperone 98.4 0.00043 9.3E-09 58.5 22.2 228 14-258 228-463 (539)
138 TIGR02795 tol_pal_ybgF tol-pal 98.4 3E-05 6.5E-10 53.9 13.5 97 12-108 4-105 (119)
139 KOG0985 Vesicle coat protein c 98.4 0.00086 1.9E-08 61.2 24.8 260 23-310 1088-1374(1666)
140 PF10037 MRP-S27: Mitochondria 98.3 1.5E-05 3.1E-10 67.0 13.0 124 39-162 61-186 (429)
141 PF10037 MRP-S27: Mitochondria 98.3 2.3E-05 4.9E-10 65.9 14.1 121 144-264 61-183 (429)
142 TIGR00756 PPR pentatricopeptid 98.3 1.5E-06 3.1E-11 45.5 4.4 33 221-253 2-34 (35)
143 cd00189 TPR Tetratricopeptide 98.3 1.7E-05 3.8E-10 52.3 10.7 90 16-106 6-95 (100)
144 PF13812 PPR_3: Pentatricopept 98.3 1.8E-06 3.9E-11 44.8 4.3 33 220-252 2-34 (34)
145 TIGR00756 PPR pentatricopeptid 98.3 2.1E-06 4.6E-11 44.8 4.3 31 82-112 3-33 (35)
146 PRK15363 pathogenicity island 98.3 3.4E-05 7.3E-10 54.9 11.3 100 42-143 33-132 (157)
147 TIGR02795 tol_pal_ybgF tol-pal 98.2 0.0001 2.2E-09 51.2 13.6 98 46-143 4-105 (119)
148 KOG1127 TPR repeat-containing 98.2 0.0014 3.1E-08 59.7 23.1 219 94-317 473-698 (1238)
149 PLN03088 SGT1, suppressor of 98.2 6.4E-05 1.4E-09 63.0 14.4 103 16-121 8-110 (356)
150 PF13812 PPR_3: Pentatricopept 98.2 2.8E-06 6.1E-11 44.0 4.2 28 82-109 4-31 (34)
151 PF05843 Suf: Suppressor of fo 98.2 5.2E-05 1.1E-09 61.2 13.4 131 11-143 2-136 (280)
152 KOG1914 mRNA cleavage and poly 98.2 0.0017 3.7E-08 55.2 21.6 151 95-247 347-500 (656)
153 PF08579 RPM2: Mitochondrial r 98.2 5.8E-05 1.2E-09 49.9 10.4 76 85-160 31-115 (120)
154 PRK15363 pathogenicity island 98.2 0.0001 2.2E-09 52.5 12.1 95 221-318 37-131 (157)
155 KOG3616 Selective LIM binding 98.2 0.00044 9.6E-09 60.9 18.0 17 15-31 620-636 (1636)
156 cd00189 TPR Tetratricopeptide 98.2 8E-05 1.7E-09 49.0 11.4 95 222-319 3-97 (100)
157 PF12895 Apc3: Anaphase-promot 98.1 7.6E-06 1.6E-10 52.8 5.7 80 23-104 2-83 (84)
158 KOG3616 Selective LIM binding 98.1 0.0013 2.8E-08 58.2 20.1 108 123-243 741-848 (1636)
159 PF05843 Suf: Suppressor of fo 98.1 0.0002 4.3E-09 57.9 14.7 130 116-248 3-136 (280)
160 PRK10866 outer membrane biogen 98.1 0.0021 4.5E-08 50.8 19.9 184 43-246 31-239 (243)
161 PF12895 Apc3: Anaphase-promot 98.1 9.9E-06 2.2E-10 52.3 5.7 81 232-315 2-83 (84)
162 PF08579 RPM2: Mitochondrial r 98.1 0.00015 3.2E-09 48.0 10.8 76 226-301 32-115 (120)
163 PF14938 SNAP: Soluble NSF att 98.1 0.00077 1.7E-08 54.7 17.3 126 193-320 123-267 (282)
164 PRK10866 outer membrane biogen 98.1 0.0033 7.1E-08 49.6 21.5 185 78-283 31-240 (243)
165 PF06239 ECSIT: Evolutionarily 98.0 0.00018 3.9E-09 53.8 11.8 102 147-267 45-151 (228)
166 PRK10153 DNA-binding transcrip 98.0 0.00061 1.3E-08 59.8 16.8 144 35-181 328-485 (517)
167 PRK02603 photosystem I assembl 98.0 0.00076 1.6E-08 50.3 15.0 63 45-107 36-100 (172)
168 PF14938 SNAP: Soluble NSF att 98.0 0.0049 1.1E-07 50.1 20.7 129 151-281 116-263 (282)
169 PLN03088 SGT1, suppressor of 98.0 0.0004 8.6E-09 58.3 14.6 93 50-144 8-100 (356)
170 PRK02603 photosystem I assembl 98.0 0.00066 1.4E-08 50.6 14.4 63 186-248 37-101 (172)
171 PRK10153 DNA-binding transcrip 98.0 0.0013 2.7E-08 57.9 18.1 144 73-222 331-489 (517)
172 CHL00033 ycf3 photosystem I as 98.0 0.0003 6.5E-09 52.3 12.5 82 43-125 34-117 (168)
173 KOG0553 TPR repeat-containing 98.0 0.00063 1.4E-08 53.4 14.1 101 159-263 91-191 (304)
174 KOG0550 Molecular chaperone (D 98.0 0.0016 3.5E-08 53.5 16.8 259 18-284 57-350 (486)
175 PF01535 PPR: PPR repeat; Int 98.0 1.3E-05 2.8E-10 40.4 3.3 29 221-249 2-30 (31)
176 KOG0553 TPR repeat-containing 97.9 0.00019 4.1E-09 56.2 10.7 101 52-156 89-189 (304)
177 PF06239 ECSIT: Evolutionarily 97.9 0.00021 4.6E-09 53.5 10.5 87 78-164 46-153 (228)
178 PF14559 TPR_19: Tetratricopep 97.9 4.8E-05 1E-09 46.7 6.3 53 21-73 2-54 (68)
179 CHL00033 ycf3 photosystem I as 97.9 0.00049 1.1E-08 51.1 12.7 94 10-104 35-138 (168)
180 PF13432 TPR_16: Tetratricopep 97.9 8.3E-05 1.8E-09 45.2 7.1 58 264-323 7-64 (65)
181 PF01535 PPR: PPR repeat; Int 97.9 2.1E-05 4.6E-10 39.6 3.6 29 46-74 2-30 (31)
182 PF12688 TPR_5: Tetratrico pep 97.9 0.0022 4.7E-08 44.1 14.0 89 86-176 8-102 (120)
183 PF13432 TPR_16: Tetratricopep 97.8 0.00012 2.5E-09 44.5 6.6 56 18-73 5-60 (65)
184 PF12688 TPR_5: Tetratrico pep 97.8 0.0034 7.4E-08 43.1 14.0 93 49-141 6-102 (120)
185 PF13414 TPR_11: TPR repeat; P 97.8 0.00014 2.9E-09 44.9 6.7 63 44-107 3-66 (69)
186 PF14559 TPR_19: Tetratricopep 97.8 0.0001 2.3E-09 45.2 6.1 54 269-323 5-58 (68)
187 PF13414 TPR_11: TPR repeat; P 97.8 0.00019 4.1E-09 44.2 7.0 65 254-320 3-68 (69)
188 PF13525 YfiO: Outer membrane 97.8 0.011 2.3E-07 45.5 18.4 46 190-237 147-196 (203)
189 KOG2796 Uncharacterized conser 97.7 0.0035 7.6E-08 48.4 14.4 56 85-140 183-238 (366)
190 COG4235 Cytochrome c biogenesi 97.7 0.0043 9.4E-08 49.1 15.3 113 207-322 145-259 (287)
191 PF13525 YfiO: Outer membrane 97.7 0.014 3.1E-07 44.8 17.7 170 120-310 11-198 (203)
192 COG4235 Cytochrome c biogenesi 97.7 0.0057 1.2E-07 48.4 15.1 102 76-179 153-257 (287)
193 PF04840 Vps16_C: Vps16, C-ter 97.6 0.024 5.2E-07 46.6 22.6 111 186-317 179-289 (319)
194 PRK10803 tol-pal system protei 97.6 0.0021 4.6E-08 51.1 12.6 97 47-143 146-246 (263)
195 PF13281 DUF4071: Domain of un 97.6 0.028 6E-07 46.8 19.9 172 41-214 138-335 (374)
196 KOG2796 Uncharacterized conser 97.6 0.013 2.8E-07 45.4 15.9 133 45-178 178-315 (366)
197 KOG2280 Vacuolar assembly/sort 97.6 0.05 1.1E-06 48.6 24.0 304 1-319 423-773 (829)
198 PRK10803 tol-pal system protei 97.5 0.0033 7.2E-08 50.0 12.4 100 222-324 146-251 (263)
199 PRK15331 chaperone protein Sic 97.5 0.0021 4.6E-08 46.2 9.6 95 47-143 40-134 (165)
200 PF13281 DUF4071: Domain of un 97.5 0.047 1E-06 45.5 21.5 98 115-212 142-254 (374)
201 PF03704 BTAD: Bacterial trans 97.5 0.0075 1.6E-07 43.5 12.8 56 154-210 67-122 (146)
202 KOG1130 Predicted G-alpha GTPa 97.5 0.0064 1.4E-07 50.2 13.1 133 185-318 196-343 (639)
203 COG3898 Uncharacterized membra 97.4 0.053 1.1E-06 44.7 29.8 283 22-319 96-392 (531)
204 PF03704 BTAD: Bacterial trans 97.4 0.0013 2.9E-08 47.5 8.3 73 45-118 63-140 (146)
205 PF13371 TPR_9: Tetratricopept 97.4 0.0011 2.5E-08 41.2 7.0 56 269-325 9-64 (73)
206 KOG2041 WD40 repeat protein [G 97.4 0.059 1.3E-06 47.9 19.0 55 183-246 851-905 (1189)
207 PF07079 DUF1347: Protein of u 97.4 0.071 1.5E-06 44.9 29.1 83 235-319 437-524 (549)
208 PF13371 TPR_9: Tetratricopept 97.3 0.0022 4.8E-08 39.9 7.4 55 19-73 4-58 (73)
209 PRK15331 chaperone protein Sic 97.3 0.019 4.2E-07 41.4 12.7 91 226-319 44-134 (165)
210 COG3898 Uncharacterized membra 97.2 0.09 1.9E-06 43.5 28.8 267 8-285 116-393 (531)
211 COG4700 Uncharacterized protei 97.2 0.05 1.1E-06 40.0 18.5 127 112-240 87-214 (251)
212 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.11 2.5E-06 43.7 28.8 68 6-73 38-105 (660)
213 COG4700 Uncharacterized protei 97.1 0.06 1.3E-06 39.6 18.2 133 75-209 85-218 (251)
214 PF12921 ATP13: Mitochondrial 97.1 0.017 3.7E-07 40.2 10.5 48 250-298 48-96 (126)
215 PF12921 ATP13: Mitochondrial 97.1 0.019 4.2E-07 39.9 10.5 83 183-265 1-99 (126)
216 PF13424 TPR_12: Tetratricopep 97.0 0.0023 5E-08 40.4 5.5 25 46-70 7-31 (78)
217 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.18 3.9E-06 42.6 19.2 143 116-264 399-545 (660)
218 PF13424 TPR_12: Tetratricopep 97.0 0.0025 5.3E-08 40.3 5.3 63 10-72 5-74 (78)
219 KOG1130 Predicted G-alpha GTPa 96.9 0.026 5.6E-07 46.8 11.8 271 11-282 16-342 (639)
220 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.041 9E-07 46.6 13.1 68 40-108 71-141 (453)
221 PF10300 DUF3808: Protein of u 96.9 0.2 4.4E-06 44.0 17.9 177 29-211 176-374 (468)
222 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.063 1.4E-06 45.6 13.8 68 6-73 71-141 (453)
223 PF04053 Coatomer_WDAD: Coatom 96.8 0.076 1.6E-06 45.9 14.5 153 21-208 272-426 (443)
224 KOG0550 Molecular chaperone (D 96.8 0.24 5.3E-06 41.3 17.5 88 121-212 256-349 (486)
225 KOG0543 FKBP-type peptidyl-pro 96.7 0.054 1.2E-06 44.9 12.3 138 18-177 216-354 (397)
226 PF04840 Vps16_C: Vps16, C-ter 96.7 0.25 5.5E-06 40.8 23.6 109 151-280 179-287 (319)
227 COG3118 Thioredoxin domain-con 96.7 0.24 5.1E-06 39.5 14.8 145 50-198 140-286 (304)
228 KOG2610 Uncharacterized conser 96.6 0.12 2.6E-06 41.9 13.0 152 22-174 115-272 (491)
229 PF04053 Coatomer_WDAD: Coatom 96.6 0.041 8.9E-07 47.5 11.5 133 11-175 296-428 (443)
230 KOG1538 Uncharacterized conser 96.6 0.46 9.9E-06 42.2 17.2 95 6-104 552-657 (1081)
231 PF10300 DUF3808: Protein of u 96.6 0.44 9.5E-06 41.9 17.7 154 125-281 199-373 (468)
232 COG4105 ComL DNA uptake lipopr 96.6 0.25 5.3E-06 38.6 20.0 181 122-323 42-237 (254)
233 PF08631 SPO22: Meiosis protei 96.6 0.32 6.9E-06 39.5 25.4 166 150-317 85-273 (278)
234 KOG0543 FKBP-type peptidyl-pro 96.5 0.15 3.2E-06 42.4 13.3 96 115-213 258-355 (397)
235 smart00299 CLH Clathrin heavy 96.5 0.18 3.9E-06 36.0 15.6 126 154-302 12-137 (140)
236 PF13428 TPR_14: Tetratricopep 96.5 0.0092 2E-07 32.7 4.4 27 47-73 4-30 (44)
237 KOG2114 Vacuolar assembly/sort 96.4 0.22 4.8E-06 45.4 14.8 246 10-283 283-549 (933)
238 KOG4555 TPR repeat-containing 96.4 0.11 2.3E-06 35.8 10.0 95 49-144 48-145 (175)
239 KOG2610 Uncharacterized conser 96.3 0.2 4.4E-06 40.6 12.5 152 91-244 115-272 (491)
240 KOG2114 Vacuolar assembly/sort 96.3 0.21 4.5E-06 45.6 13.6 151 12-172 336-486 (933)
241 COG1729 Uncharacterized protei 96.2 0.18 4E-06 39.7 11.8 97 46-143 144-244 (262)
242 PF13428 TPR_14: Tetratricopep 96.2 0.018 3.8E-07 31.6 4.8 39 12-50 3-41 (44)
243 KOG3941 Intermediate in Toll s 96.2 0.07 1.5E-06 42.0 9.4 88 78-165 66-174 (406)
244 smart00299 CLH Clathrin heavy 96.2 0.27 5.8E-06 35.1 14.9 84 49-140 12-95 (140)
245 PF13512 TPR_18: Tetratricopep 96.2 0.28 6E-06 34.7 11.7 55 125-179 21-77 (142)
246 COG1729 Uncharacterized protei 96.1 0.22 4.8E-06 39.2 11.8 105 221-327 144-252 (262)
247 PF08631 SPO22: Meiosis protei 96.1 0.6 1.3E-05 37.9 24.8 103 115-219 85-192 (278)
248 PF13512 TPR_18: Tetratricopep 96.1 0.3 6.6E-06 34.5 11.6 78 13-90 13-93 (142)
249 COG4105 ComL DNA uptake lipopr 96.1 0.5 1.1E-05 37.0 21.4 75 51-125 41-117 (254)
250 KOG3941 Intermediate in Toll s 96.1 0.17 3.8E-06 39.9 10.9 102 147-267 65-171 (406)
251 COG3118 Thioredoxin domain-con 96.0 0.58 1.3E-05 37.4 17.4 154 86-242 141-295 (304)
252 PF09205 DUF1955: Domain of un 96.0 0.31 6.7E-06 33.8 12.8 135 161-321 14-151 (161)
253 KOG4555 TPR repeat-containing 96.0 0.32 6.9E-06 33.6 11.6 53 89-142 53-105 (175)
254 PRK11906 transcriptional regul 95.9 0.94 2E-05 38.9 15.9 116 25-142 273-400 (458)
255 COG3629 DnrI DNA-binding trans 95.8 0.15 3.3E-06 40.7 9.9 81 43-124 152-237 (280)
256 KOG1585 Protein required for f 95.8 0.69 1.5E-05 35.9 16.0 51 225-277 196-249 (308)
257 COG3629 DnrI DNA-binding trans 95.7 0.23 4.9E-06 39.7 10.5 82 78-160 152-238 (280)
258 KOG2280 Vacuolar assembly/sort 95.6 1.7 3.7E-05 39.5 20.8 255 43-317 506-797 (829)
259 KOG2041 WD40 repeat protein [G 95.6 1.7 3.6E-05 39.3 22.2 55 15-69 765-821 (1189)
260 PRK11906 transcriptional regul 95.4 1.5 3.3E-05 37.7 17.6 118 59-178 273-401 (458)
261 COG0457 NrfG FOG: TPR repeat [ 95.3 1 2.2E-05 34.9 29.5 223 58-284 37-265 (291)
262 PF09205 DUF1955: Domain of un 95.1 0.7 1.5E-05 32.1 14.3 57 157-214 94-150 (161)
263 PF07035 Mic1: Colon cancer-as 95.1 0.89 1.9E-05 33.3 13.7 136 168-318 13-148 (167)
264 PF10602 RPN7: 26S proteasome 95.1 0.64 1.4E-05 34.7 10.8 63 45-107 37-101 (177)
265 PF13170 DUF4003: Protein of u 95.0 1.6 3.5E-05 35.7 21.2 24 273-296 200-223 (297)
266 COG4785 NlpI Lipoprotein NlpI, 95.0 1.2 2.5E-05 34.1 16.4 174 149-334 99-281 (297)
267 PF10602 RPN7: 26S proteasome 95.0 1.1 2.3E-05 33.5 12.3 61 116-176 38-100 (177)
268 KOG1258 mRNA processing protei 95.0 2.4 5.3E-05 37.5 29.6 123 185-310 298-420 (577)
269 PF07035 Mic1: Colon cancer-as 94.9 1.1 2.4E-05 32.9 14.8 101 65-175 15-115 (167)
270 PF13431 TPR_17: Tetratricopep 94.8 0.04 8.6E-07 28.1 2.7 32 278-310 2-33 (34)
271 KOG1585 Protein required for f 94.8 1.5 3.3E-05 34.2 17.3 44 269-313 204-250 (308)
272 PF07079 DUF1347: Protein of u 94.7 2.5 5.4E-05 36.2 25.1 259 20-285 16-328 (549)
273 KOG1941 Acetylcholine receptor 94.7 2.2 4.7E-05 35.4 14.0 226 20-246 16-273 (518)
274 PF09613 HrpB1_HrpK: Bacterial 94.6 1.2 2.7E-05 32.2 13.3 87 21-109 21-107 (160)
275 PF13170 DUF4003: Protein of u 94.5 2.3 4.9E-05 34.9 17.9 130 95-226 78-224 (297)
276 PF13431 TPR_17: Tetratricopep 94.4 0.067 1.5E-06 27.3 2.9 30 35-64 4-33 (34)
277 KOG1941 Acetylcholine receptor 94.4 2.5 5.4E-05 35.1 13.8 226 56-282 18-273 (518)
278 TIGR02561 HrpB1_HrpK type III 94.3 1.3 2.9E-05 31.5 11.0 52 22-73 22-73 (153)
279 PF13176 TPR_7: Tetratricopept 94.3 0.14 3.1E-06 26.4 4.1 23 82-104 2-24 (36)
280 COG0457 NrfG FOG: TPR repeat [ 94.3 1.9 4.2E-05 33.3 29.7 202 115-319 60-265 (291)
281 KOG1550 Extracellular protein 94.2 4.3 9.2E-05 36.8 23.5 180 60-249 228-427 (552)
282 PF13176 TPR_7: Tetratricopept 94.0 0.15 3.2E-06 26.4 3.8 26 46-71 1-26 (36)
283 PRK15180 Vi polysaccharide bio 94.0 3.7 8.1E-05 35.5 14.0 122 21-144 300-421 (831)
284 PF04184 ST7: ST7 protein; In 94.0 3.9 8.4E-05 35.6 16.8 77 116-192 261-339 (539)
285 PF07719 TPR_2: Tetratricopept 93.8 0.18 3.9E-06 25.4 4.0 31 291-321 2-32 (34)
286 PF09613 HrpB1_HrpK: Bacterial 93.7 2 4.2E-05 31.2 11.2 112 192-311 18-130 (160)
287 PF02284 COX5A: Cytochrome c o 93.4 0.76 1.6E-05 30.2 6.8 60 202-262 28-87 (108)
288 PF00515 TPR_1: Tetratricopept 93.4 0.23 5E-06 25.0 3.9 31 291-321 2-32 (34)
289 KOG4234 TPR repeat-containing 93.2 2.2 4.7E-05 32.2 9.8 91 192-285 103-198 (271)
290 PF00515 TPR_1: Tetratricopept 93.0 0.35 7.5E-06 24.4 4.2 26 82-107 4-29 (34)
291 PF02284 COX5A: Cytochrome c o 92.9 1.5 3.2E-05 28.9 7.6 50 270-319 25-74 (108)
292 cd00923 Cyt_c_Oxidase_Va Cytoc 92.8 1.7 3.8E-05 28.3 8.9 63 257-319 8-71 (103)
293 COG4649 Uncharacterized protei 92.8 3 6.4E-05 30.7 13.9 123 91-213 70-196 (221)
294 KOG1550 Extracellular protein 92.7 7.7 0.00017 35.2 27.8 284 26-324 228-543 (552)
295 KOG4570 Uncharacterized conser 92.6 2.8 6.1E-05 34.0 10.4 100 146-247 61-163 (418)
296 PF13929 mRNA_stabil: mRNA sta 92.6 4.6 0.0001 32.5 15.2 144 47-193 134-287 (292)
297 PF04184 ST7: ST7 protein; In 92.6 6.6 0.00014 34.3 17.2 78 148-226 258-338 (539)
298 KOG4570 Uncharacterized conser 92.5 0.96 2.1E-05 36.5 7.7 105 37-143 57-164 (418)
299 KOG1538 Uncharacterized conser 92.5 8 0.00017 35.0 20.6 20 50-69 638-657 (1081)
300 KOG0276 Vesicle coat complex C 92.3 3 6.6E-05 37.1 11.0 151 21-210 597-747 (794)
301 COG1747 Uncharacterized N-term 92.0 7.9 0.00017 33.9 21.7 96 112-212 64-159 (711)
302 KOG1920 IkappaB kinase complex 92.0 13 0.00028 36.3 22.2 28 45-72 791-820 (1265)
303 COG4455 ImpE Protein of avirul 91.9 1.7 3.6E-05 33.3 7.9 77 12-88 3-81 (273)
304 PF02259 FAT: FAT domain; Int 91.9 7 0.00015 33.0 22.8 53 17-72 5-57 (352)
305 PF11207 DUF2989: Protein of u 91.7 4.4 9.6E-05 30.7 10.0 80 229-311 117-199 (203)
306 PF13174 TPR_6: Tetratricopept 91.7 0.27 5.9E-06 24.4 2.8 26 295-320 5-30 (33)
307 PF13374 TPR_10: Tetratricopep 91.6 0.53 1.2E-05 24.9 4.1 26 46-71 4-29 (42)
308 PF10345 Cohesin_load: Cohesin 91.6 11 0.00024 34.7 29.7 181 29-210 40-251 (608)
309 PF07719 TPR_2: Tetratricopept 91.5 0.73 1.6E-05 23.0 4.4 27 221-247 3-29 (34)
310 PF11207 DUF2989: Protein of u 91.3 3.3 7.2E-05 31.4 9.0 42 197-238 153-197 (203)
311 TIGR03504 FimV_Cterm FimV C-te 91.1 0.63 1.4E-05 25.3 3.9 26 295-320 4-29 (44)
312 PF04097 Nic96: Nup93/Nic96; 91.0 13 0.00027 34.4 21.9 59 15-73 116-181 (613)
313 PF13374 TPR_10: Tetratricopep 90.7 0.9 2E-05 24.0 4.5 27 80-106 3-29 (42)
314 cd00923 Cyt_c_Oxidase_Va Cytoc 90.5 3.5 7.5E-05 26.9 9.7 63 199-262 22-84 (103)
315 PF13174 TPR_6: Tetratricopept 90.5 0.5 1.1E-05 23.4 3.1 24 50-73 6-29 (33)
316 COG4785 NlpI Lipoprotein NlpI, 90.4 6.8 0.00015 30.2 15.2 183 57-250 78-268 (297)
317 PF06552 TOM20_plant: Plant sp 90.4 4.6 0.0001 30.0 8.8 96 26-124 7-123 (186)
318 PF07721 TPR_4: Tetratricopept 90.3 0.52 1.1E-05 22.2 2.8 23 292-314 3-25 (26)
319 PF02259 FAT: FAT domain; Int 90.2 10 0.00022 31.9 20.7 53 51-107 5-57 (352)
320 KOG4648 Uncharacterized conser 90.1 0.83 1.8E-05 37.4 5.3 90 192-285 105-195 (536)
321 KOG4642 Chaperone-dependent E3 90.1 7.8 0.00017 30.3 11.2 82 160-245 21-104 (284)
322 KOG4234 TPR repeat-containing 89.8 6.4 0.00014 29.9 9.2 92 52-144 103-198 (271)
323 PF00637 Clathrin: Region in C 89.5 0.18 3.9E-06 36.2 1.2 49 54-102 17-65 (143)
324 PRK15180 Vi polysaccharide bio 89.4 14 0.0003 32.3 13.9 119 126-248 301-420 (831)
325 PF00637 Clathrin: Region in C 89.3 0.16 3.4E-06 36.5 0.8 85 155-246 13-97 (143)
326 COG4649 Uncharacterized protei 89.2 7.2 0.00016 28.8 16.3 135 184-319 59-196 (221)
327 KOG4648 Uncharacterized conser 89.2 4.2 9.1E-05 33.5 8.6 93 18-113 105-197 (536)
328 COG5159 RPN6 26S proteasome re 89.1 11 0.00023 30.5 11.4 122 195-316 14-151 (421)
329 KOG0276 Vesicle coat complex C 89.0 6.4 0.00014 35.2 10.0 178 55-280 597-774 (794)
330 PF13181 TPR_8: Tetratricopept 89.0 0.92 2E-05 22.7 3.4 29 291-319 2-30 (34)
331 TIGR03504 FimV_Cterm FimV C-te 88.5 1.4 3.1E-05 24.0 3.9 24 225-248 5-28 (44)
332 PF07163 Pex26: Pex26 protein; 88.3 11 0.00023 30.3 10.0 87 86-172 90-181 (309)
333 PF13929 mRNA_stabil: mRNA sta 88.2 12 0.00027 30.2 18.4 138 164-302 143-290 (292)
334 PF07163 Pex26: Pex26 protein; 88.1 10 0.00022 30.5 9.7 87 51-137 90-181 (309)
335 KOG4507 Uncharacterized conser 87.7 8.1 0.00018 34.5 9.8 89 54-143 617-705 (886)
336 TIGR02508 type_III_yscG type I 87.6 6.2 0.00013 26.0 8.0 86 25-117 20-105 (115)
337 COG4455 ImpE Protein of avirul 87.3 6.5 0.00014 30.3 8.0 59 118-177 5-63 (273)
338 PF13181 TPR_8: Tetratricopept 87.2 2.5 5.3E-05 21.0 4.4 27 81-107 3-29 (34)
339 COG2909 MalT ATP-dependent tra 86.5 30 0.00065 32.8 23.7 194 125-318 426-646 (894)
340 TIGR02561 HrpB1_HrpK type III 86.4 10 0.00022 27.3 11.6 53 195-249 21-74 (153)
341 COG3947 Response regulator con 86.1 17 0.00036 29.5 11.7 56 84-140 284-339 (361)
342 PF04097 Nic96: Nup93/Nic96; 86.0 29 0.00063 32.1 15.1 61 47-108 114-181 (613)
343 KOG4077 Cytochrome c oxidase, 85.6 3.4 7.3E-05 28.5 5.2 79 9-88 46-127 (149)
344 COG1747 Uncharacterized N-term 85.4 26 0.00055 31.0 25.2 181 75-263 62-248 (711)
345 PRK09687 putative lyase; Provi 85.0 19 0.00042 29.3 27.2 236 41-302 34-279 (280)
346 KOG4077 Cytochrome c oxidase, 84.5 11 0.00024 26.1 9.3 48 272-319 66-113 (149)
347 PF10345 Cohesin_load: Cohesin 83.9 36 0.00079 31.5 28.0 162 13-175 62-251 (608)
348 PF13762 MNE1: Mitochondrial s 83.8 14 0.0003 26.5 10.4 89 45-133 40-134 (145)
349 PF06552 TOM20_plant: Plant sp 83.6 16 0.00035 27.3 9.3 41 200-248 96-136 (186)
350 smart00028 TPR Tetratricopepti 83.2 2.3 4.9E-05 20.1 3.2 26 293-318 4-29 (34)
351 KOG4642 Chaperone-dependent E3 83.1 21 0.00045 28.1 11.2 119 19-139 19-142 (284)
352 KOG1464 COP9 signalosome, subu 83.1 22 0.00048 28.5 13.7 208 109-317 21-258 (440)
353 PF04910 Tcf25: Transcriptiona 82.7 29 0.00063 29.5 18.5 125 146-283 37-167 (360)
354 PRK09687 putative lyase; Provi 82.3 26 0.00056 28.6 27.3 221 77-321 35-265 (280)
355 KOG0686 COP9 signalosome, subu 82.2 31 0.00067 29.5 15.3 64 45-108 151-216 (466)
356 PF11846 DUF3366: Domain of un 82.2 9.6 0.00021 29.0 7.4 63 46-108 110-173 (193)
357 KOG2063 Vacuolar assembly/sort 82.0 50 0.0011 31.8 15.3 26 82-107 507-532 (877)
358 KOG1920 IkappaB kinase complex 81.9 57 0.0012 32.3 20.7 83 225-319 971-1055(1265)
359 KOG3364 Membrane protein invol 81.4 6.4 0.00014 27.7 5.4 27 296-322 77-103 (149)
360 COG2976 Uncharacterized protei 81.0 22 0.00047 27.0 14.0 89 226-320 96-189 (207)
361 KOG1258 mRNA processing protei 80.4 44 0.00096 30.1 33.0 88 21-108 90-180 (577)
362 PF14853 Fis1_TPR_C: Fis1 C-te 80.0 6.9 0.00015 22.4 4.4 31 295-325 6-36 (53)
363 cd00280 TRFH Telomeric Repeat 79.9 22 0.00047 26.7 7.9 23 85-107 117-139 (200)
364 KOG1308 Hsp70-interacting prot 79.7 1.7 3.6E-05 35.7 2.5 90 56-148 126-216 (377)
365 PF07575 Nucleopor_Nup85: Nup8 79.4 23 0.00049 32.4 9.9 24 186-209 407-430 (566)
366 COG3947 Response regulator con 79.0 34 0.00073 27.9 15.2 53 265-318 289-341 (361)
367 KOG2422 Uncharacterized conser 78.3 52 0.0011 29.7 17.4 102 226-327 349-456 (665)
368 PF10579 Rapsyn_N: Rapsyn N-te 77.8 8.4 0.00018 24.1 4.6 45 269-313 20-66 (80)
369 KOG1586 Protein required for f 77.7 32 0.0007 27.0 21.2 23 228-250 163-185 (288)
370 smart00386 HAT HAT (Half-A-TPR 77.0 6.8 0.00015 18.9 4.1 27 25-51 2-28 (33)
371 PF13762 MNE1: Mitochondrial s 77.0 25 0.00053 25.3 10.7 80 153-232 43-128 (145)
372 KOG0686 COP9 signalosome, subu 76.6 48 0.001 28.4 14.5 62 12-73 152-216 (466)
373 cd00280 TRFH Telomeric Repeat 76.0 31 0.00067 25.9 8.0 21 227-247 119-139 (200)
374 PRK10941 hypothetical protein; 75.9 40 0.00087 27.3 9.2 50 269-319 195-244 (269)
375 PRK11619 lytic murein transgly 75.6 71 0.0015 29.9 26.7 118 197-318 254-374 (644)
376 KOG1464 COP9 signalosome, subu 75.3 41 0.0009 27.0 22.3 206 4-210 20-257 (440)
377 PF10579 Rapsyn_N: Rapsyn N-te 74.8 15 0.00033 23.0 5.1 16 92-107 19-34 (80)
378 PF12862 Apc5: Anaphase-promot 74.3 21 0.00046 23.3 6.4 51 21-71 9-68 (94)
379 PF08424 NRDE-2: NRDE-2, neces 74.1 51 0.0011 27.6 17.2 102 37-140 12-128 (321)
380 PF09986 DUF2225: Uncharacteri 73.3 41 0.0009 26.1 11.4 31 255-285 165-195 (214)
381 KOG2908 26S proteasome regulat 73.0 54 0.0012 27.4 10.2 58 155-212 81-143 (380)
382 PHA02875 ankyrin repeat protei 72.9 31 0.00066 30.0 8.8 212 52-290 7-230 (413)
383 KOG2066 Vacuolar assembly/sort 72.9 85 0.0018 29.6 24.1 150 17-176 363-532 (846)
384 PF11848 DUF3368: Domain of un 72.9 14 0.0003 20.5 5.3 30 269-298 16-45 (48)
385 KOG0376 Serine-threonine phosp 72.7 18 0.00038 31.5 6.8 109 15-126 9-117 (476)
386 PF11846 DUF3366: Domain of un 72.5 30 0.00064 26.3 7.6 34 215-248 140-173 (193)
387 PF09670 Cas_Cas02710: CRISPR- 71.9 65 0.0014 27.8 11.5 57 51-108 138-198 (379)
388 PF14689 SPOB_a: Sensor_kinase 70.6 16 0.00034 21.7 4.5 22 85-106 29-50 (62)
389 PF11663 Toxin_YhaV: Toxin wit 69.5 6.2 0.00014 27.6 2.9 30 92-123 108-137 (140)
390 KOG0687 26S proteasome regulat 69.4 65 0.0014 26.8 14.0 96 220-317 105-208 (393)
391 cd08819 CARD_MDA5_2 Caspase ac 69.0 28 0.0006 22.4 7.3 14 163-176 50-63 (88)
392 PF10366 Vps39_1: Vacuolar sor 68.9 33 0.00072 23.2 6.6 26 187-212 42-67 (108)
393 PF08424 NRDE-2: NRDE-2, neces 68.8 69 0.0015 26.8 18.0 28 223-250 158-185 (321)
394 COG5108 RPO41 Mitochondrial DN 68.8 42 0.00091 30.9 8.3 73 15-90 33-114 (1117)
395 COG2976 Uncharacterized protei 68.7 50 0.0011 25.2 14.8 89 121-214 96-189 (207)
396 PRK10564 maltose regulon perip 68.6 14 0.0003 30.1 5.1 30 47-76 260-289 (303)
397 KOG4507 Uncharacterized conser 68.6 78 0.0017 28.8 9.7 114 77-192 605-718 (886)
398 PRK10564 maltose regulon perip 68.6 13 0.00027 30.3 4.8 36 152-187 260-295 (303)
399 PF09454 Vps23_core: Vps23 cor 68.5 13 0.00028 22.4 3.8 47 253-301 7-53 (65)
400 COG0735 Fur Fe2+/Zn2+ uptake r 68.4 38 0.00083 24.4 6.9 62 66-128 8-69 (145)
401 cd08819 CARD_MDA5_2 Caspase ac 67.7 30 0.00065 22.3 7.5 66 168-239 21-86 (88)
402 PF14689 SPOB_a: Sensor_kinase 67.0 20 0.00044 21.2 4.5 23 224-246 28-50 (62)
403 PRK10941 hypothetical protein; 67.0 68 0.0015 26.1 10.2 78 46-124 183-261 (269)
404 KOG2659 LisH motif-containing 66.8 60 0.0013 25.4 8.6 99 40-140 22-129 (228)
405 PF03745 DUF309: Domain of unk 66.2 25 0.00055 20.9 4.8 13 163-175 13-25 (62)
406 COG2909 MalT ATP-dependent tra 64.8 1.4E+02 0.003 28.8 27.4 223 89-315 425-684 (894)
407 COG5159 RPN6 26S proteasome re 64.4 78 0.0017 25.8 13.3 53 85-137 9-68 (421)
408 KOG2582 COP9 signalosome, subu 64.3 89 0.0019 26.5 14.1 56 230-285 288-346 (422)
409 PF11663 Toxin_YhaV: Toxin wit 64.2 9.3 0.0002 26.8 2.9 31 126-158 107-137 (140)
410 KOG4279 Serine/threonine prote 64.1 1.3E+02 0.0029 28.4 16.0 120 96-220 180-321 (1226)
411 COG0735 Fur Fe2+/Zn2+ uptake r 63.8 52 0.0011 23.7 6.9 25 191-215 27-51 (145)
412 PHA02875 ankyrin repeat protei 63.8 99 0.0021 26.9 14.4 208 18-254 7-230 (413)
413 KOG0128 RNA-binding protein SA 63.5 1.4E+02 0.003 28.5 27.2 96 10-107 113-218 (881)
414 COG4941 Predicted RNA polymera 63.4 89 0.0019 26.2 11.6 117 165-284 272-394 (415)
415 KOG4567 GTPase-activating prot 63.3 68 0.0015 26.5 7.8 43 205-247 264-306 (370)
416 PF11848 DUF3368: Domain of un 62.9 25 0.00053 19.6 5.2 33 230-262 13-45 (48)
417 PRK09857 putative transposase; 62.2 89 0.0019 25.8 8.9 66 82-148 209-274 (292)
418 PF14561 TPR_20: Tetratricopep 61.9 41 0.00089 21.8 8.9 34 40-73 18-51 (90)
419 KOG0292 Vesicle coat complex C 61.3 1.2E+02 0.0025 29.3 9.8 131 158-319 652-782 (1202)
420 PF11817 Foie-gras_1: Foie gra 60.6 76 0.0017 25.3 8.0 57 84-140 183-244 (247)
421 COG5108 RPO41 Mitochondrial DN 60.3 1E+02 0.0022 28.7 9.0 91 189-283 33-131 (1117)
422 PF09477 Type_III_YscG: Bacter 59.5 52 0.0011 22.2 10.2 78 25-108 21-98 (116)
423 PF09477 Type_III_YscG: Bacter 59.1 53 0.0011 22.2 9.0 17 269-285 83-99 (116)
424 PF10255 Paf67: RNA polymerase 58.4 69 0.0015 27.8 7.6 99 43-141 74-191 (404)
425 KOG4567 GTPase-activating prot 58.4 97 0.0021 25.6 7.9 58 169-231 263-320 (370)
426 KOG1308 Hsp70-interacting prot 57.7 20 0.00043 29.8 4.2 90 126-217 126-215 (377)
427 KOG1839 Uncharacterized protei 57.1 2E+02 0.0044 29.1 11.1 125 18-142 940-1085(1236)
428 PF04910 Tcf25: Transcriptiona 56.3 1.3E+02 0.0028 25.8 22.1 117 21-141 21-166 (360)
429 KOG2396 HAT (Half-A-TPR) repea 56.2 1.5E+02 0.0033 26.5 27.1 68 6-73 101-169 (568)
430 KOG0545 Aryl-hydrocarbon recep 55.7 1.1E+02 0.0023 24.6 10.7 106 226-333 185-307 (329)
431 PF07575 Nucleopor_Nup85: Nup8 55.3 1.7E+02 0.0037 26.9 18.6 77 204-283 390-466 (566)
432 KOG4279 Serine/threonine prote 55.2 1.9E+02 0.0042 27.4 11.1 21 193-213 375-395 (1226)
433 COG0790 FOG: TPR repeat, SEL1 54.1 1.2E+02 0.0026 24.8 22.6 84 91-180 53-144 (292)
434 PF12862 Apc5: Anaphase-promot 54.1 59 0.0013 21.2 6.6 53 55-107 9-69 (94)
435 KOG2066 Vacuolar assembly/sort 53.5 2.1E+02 0.0045 27.3 13.8 22 260-282 511-532 (846)
436 PF11817 Foie-gras_1: Foie gra 53.2 1E+02 0.0022 24.7 7.6 19 51-69 17-35 (247)
437 KOG2063 Vacuolar assembly/sort 53.0 2.3E+02 0.005 27.7 21.4 115 12-126 506-638 (877)
438 KOG0890 Protein kinase of the 52.7 3.5E+02 0.0077 29.7 21.7 63 219-285 1670-1732(2382)
439 PF10255 Paf67: RNA polymerase 52.5 32 0.0007 29.7 4.9 57 15-71 127-191 (404)
440 KOG2297 Predicted translation 50.9 1.4E+02 0.0031 24.7 14.2 14 7-20 108-121 (412)
441 KOG0376 Serine-threonine phosp 50.5 63 0.0014 28.4 6.2 103 86-194 11-115 (476)
442 COG5191 Uncharacterized conser 50.4 45 0.00097 27.5 5.0 78 216-297 104-183 (435)
443 PF14853 Fis1_TPR_C: Fis1 C-te 50.3 47 0.001 19.0 6.0 35 225-261 7-41 (53)
444 KOG2422 Uncharacterized conser 49.5 2.1E+02 0.0045 26.2 19.7 154 92-247 251-447 (665)
445 PRK11639 zinc uptake transcrip 49.3 1.1E+02 0.0023 22.8 7.2 45 190-234 31-75 (169)
446 TIGR02508 type_III_yscG type I 49.0 79 0.0017 21.1 8.3 51 228-285 48-98 (115)
447 cd07153 Fur_like Ferric uptake 48.8 58 0.0013 22.1 5.0 36 58-93 14-49 (116)
448 KOG2297 Predicted translation 48.4 1.6E+02 0.0034 24.5 17.8 73 196-275 267-341 (412)
449 PF00244 14-3-3: 14-3-3 protei 48.2 1.4E+02 0.003 23.7 11.9 58 49-106 6-64 (236)
450 PF12926 MOZART2: Mitotic-spin 48.1 73 0.0016 20.5 7.9 41 100-140 29-69 (88)
451 KOG0991 Replication factor C, 48.0 1.4E+02 0.003 23.8 16.1 105 194-303 169-285 (333)
452 PF08311 Mad3_BUB1_I: Mad3/BUB 47.5 95 0.0021 21.7 8.6 20 294-313 103-122 (126)
453 KOG0890 Protein kinase of the 47.4 4.3E+02 0.0093 29.2 25.7 120 15-141 1388-1510(2382)
454 KOG2471 TPR repeat-containing 47.1 2.1E+02 0.0046 25.6 17.3 277 21-303 28-382 (696)
455 PF00244 14-3-3: 14-3-3 protei 47.0 1.4E+02 0.0031 23.6 11.5 57 84-140 6-63 (236)
456 KOG0991 Replication factor C, 46.7 1.5E+02 0.0032 23.6 13.3 47 146-194 236-282 (333)
457 KOG0551 Hsp90 co-chaperone CNS 46.6 1.3E+02 0.0029 25.2 7.1 90 190-282 87-180 (390)
458 PF11123 DNA_Packaging_2: DNA 46.5 69 0.0015 19.8 4.8 34 25-58 12-45 (82)
459 PF11768 DUF3312: Protein of u 46.0 2.3E+02 0.005 25.7 11.2 59 118-178 412-473 (545)
460 KOG3824 Huntingtin interacting 45.6 85 0.0018 25.9 5.9 53 230-284 127-179 (472)
461 KOG1463 26S proteasome regulat 45.5 1.9E+02 0.0041 24.5 10.2 96 222-317 51-155 (411)
462 PF09454 Vps23_core: Vps23 cor 45.3 36 0.00079 20.5 3.0 50 42-92 6-55 (65)
463 KOG0292 Vesicle coat complex C 44.5 78 0.0017 30.4 6.2 49 53-107 652-700 (1202)
464 cd07153 Fur_like Ferric uptake 44.4 69 0.0015 21.7 4.8 36 198-233 14-49 (116)
465 PRK11619 lytic murein transgly 44.3 2.8E+02 0.0061 26.1 28.5 242 59-319 81-341 (644)
466 PF07064 RIC1: RIC1; InterPro 43.7 1.7E+02 0.0038 23.6 15.5 24 14-37 86-109 (258)
467 KOG1166 Mitotic checkpoint ser 43.7 2.2E+02 0.0049 28.2 9.2 70 231-300 90-159 (974)
468 PF10366 Vps39_1: Vacuolar sor 43.5 1E+02 0.0022 20.9 7.3 27 151-177 41-67 (108)
469 PF01475 FUR: Ferric uptake re 42.8 53 0.0011 22.6 4.1 21 60-80 23-43 (120)
470 PRK14962 DNA polymerase III su 42.7 2.5E+02 0.0055 25.2 14.0 33 126-158 255-287 (472)
471 KOG2034 Vacuolar sorting prote 42.6 3.3E+02 0.0071 26.5 22.4 19 287-305 625-643 (911)
472 PF08311 Mad3_BUB1_I: Mad3/BUB 42.4 1.2E+02 0.0025 21.2 10.1 43 97-139 81-124 (126)
473 PF14669 Asp_Glu_race_2: Putat 42.4 1.5E+02 0.0033 22.6 12.9 170 3-174 1-206 (233)
474 PRK11639 zinc uptake transcrip 42.2 1.4E+02 0.0031 22.1 7.3 43 86-128 32-74 (169)
475 KOG3364 Membrane protein invol 42.1 1.3E+02 0.0028 21.6 9.7 68 41-108 29-100 (149)
476 KOG3677 RNA polymerase I-assoc 41.9 1.9E+02 0.0041 25.2 7.5 61 45-105 236-298 (525)
477 PF09670 Cas_Cas02710: CRISPR- 41.9 2.3E+02 0.005 24.5 12.4 18 196-213 143-160 (379)
478 KOG0508 Ankyrin repeat protein 41.7 1.4E+02 0.0031 26.4 6.9 109 19-137 90-203 (615)
479 PF01475 FUR: Ferric uptake re 41.1 65 0.0014 22.1 4.3 34 199-232 22-55 (120)
480 COG5187 RPN7 26S proteasome re 41.0 2E+02 0.0044 23.7 12.8 23 186-208 117-139 (412)
481 PF02847 MA3: MA3 domain; Int 41.0 1.1E+02 0.0024 20.5 7.5 61 14-75 6-68 (113)
482 KOG4814 Uncharacterized conser 40.6 2.5E+02 0.0055 26.1 8.4 86 21-107 365-456 (872)
483 PF05944 Phage_term_smal: Phag 40.4 1.3E+02 0.0029 21.3 7.6 23 228-250 57-79 (132)
484 smart00777 Mad3_BUB1_I Mad3/BU 39.9 1.3E+02 0.0028 21.1 9.3 18 296-313 105-122 (125)
485 PF09986 DUF2225: Uncharacteri 39.8 1.8E+02 0.0039 22.7 11.7 50 95-144 141-195 (214)
486 PF15297 CKAP2_C: Cytoskeleton 39.7 2.4E+02 0.0051 24.0 9.1 65 59-125 118-186 (353)
487 COG0790 FOG: TPR repeat, SEL1 39.5 2.1E+02 0.0045 23.3 23.9 150 56-214 53-221 (292)
488 KOG1839 Uncharacterized protei 39.2 4.4E+02 0.0095 27.0 12.3 153 89-241 942-1121(1236)
489 COG5191 Uncharacterized conser 39.1 1.1E+02 0.0023 25.5 5.5 66 9-74 106-172 (435)
490 PRK09462 fur ferric uptake reg 38.5 1.5E+02 0.0032 21.3 7.5 34 200-233 33-66 (148)
491 KOG4521 Nuclear pore complex, 37.4 4.6E+02 0.01 26.7 14.4 53 82-135 986-1042(1480)
492 PRK13342 recombination factor 37.1 2.9E+02 0.0062 24.2 17.3 155 5-177 170-333 (413)
493 KOG2471 TPR repeat-containing 36.9 3.2E+02 0.0068 24.6 8.8 109 51-161 247-381 (696)
494 PF03745 DUF309: Domain of unk 36.6 94 0.002 18.5 6.0 13 23-35 12-24 (62)
495 PF13934 ELYS: Nuclear pore co 36.5 2.1E+02 0.0046 22.5 15.3 71 119-195 113-183 (226)
496 KOG1524 WD40 repeat-containing 36.4 3.1E+02 0.0067 24.8 8.1 54 9-67 572-625 (737)
497 KOG3677 RNA polymerase I-assoc 36.2 3E+02 0.0064 24.1 9.8 58 83-141 239-299 (525)
498 KOG1586 Protein required for f 36.1 2.2E+02 0.0049 22.7 18.9 18 161-178 166-183 (288)
499 smart00638 LPD_N Lipoprotein N 35.6 3.6E+02 0.0078 24.9 25.7 199 42-247 308-524 (574)
500 PRK09462 fur ferric uptake reg 35.2 1.7E+02 0.0037 21.0 7.3 64 65-128 3-66 (148)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-56 Score=407.30 Aligned_cols=333 Identities=19% Similarity=0.307 Sum_probs=306.5
Q ss_pred CCCCCCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCH
Q 018782 1 MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDI 79 (350)
Q Consensus 1 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 79 (350)
|++.|+.||..+|+.+|.+|++.|+++.|.++|+.|.. +..||..+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 56789999999999999999999999999999999876 78899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHH
Q 018782 80 LAHNSLLEAMCKAGNIDEAHGMLREMRS--IGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIR 157 (350)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (350)
.+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 9999999999999999999999999976 57889999999999999999999999999999999999999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhH
Q 018782 158 KLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDR 237 (350)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 237 (350)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ee 702 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782 238 ATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME 317 (350)
Q Consensus 238 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 317 (350)
|.++|++|.+.|+.||..+|+.+|.+|++. |++++|.++|++|...|+.||..+|..++.+|.+.|++++|.+++++|.
T Consensus 703 A~~lf~eM~~~g~~PdvvtyN~LI~gy~k~-G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 703 ALELYEDIKSIKLRPTVSTMNALITALCEG-NQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999889999999999999999877 9999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHhccc
Q 018782 318 RSTSCTIQELANAMRGK 334 (350)
Q Consensus 318 ~~~~~~~~~~~~~l~~~ 334 (350)
+.+..++..+++.++..
T Consensus 782 k~Gi~pd~~tynsLIgl 798 (1060)
T PLN03218 782 EDGIKPNLVMCRCITGL 798 (1060)
T ss_pred HcCCCCCHHHHHHHHHH
Confidence 98888888888777644
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.9e-56 Score=402.98 Aligned_cols=339 Identities=18% Similarity=0.293 Sum_probs=329.3
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782 8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL 86 (350)
Q Consensus 8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 86 (350)
||..+|+.++.+|++.|+++.|.++|+.|.. +..|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 8999999999999999999999999999987 889999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhh--CCCCccHHHHHHHHHHHHccCC
Q 018782 87 EAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKR--YNLVPNVFTYNCIIRKLCKNEK 164 (350)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~ 164 (350)
.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999976 6789999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHH
Q 018782 165 VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWES 244 (350)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 244 (350)
+++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcH
Q 018782 245 MEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTI 324 (350)
Q Consensus 245 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 324 (350)
|.+.|+.||..+|+.+|.+|++. |++++|.++|++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|...+..|+
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~-G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNA-KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999987 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccccccchhhc
Q 018782 325 QELANAMRGKTGFRKSRSEETEL 347 (350)
Q Consensus 325 ~~~~~~l~~~~~~~~~~~~~~~~ 347 (350)
...++.++..+...+...++.++
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999988877776654
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-51 Score=371.70 Aligned_cols=335 Identities=19% Similarity=0.268 Sum_probs=246.9
Q ss_pred CCCCCCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHH
Q 018782 1 MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDIL 80 (350)
Q Consensus 1 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (350)
|++.|+.||..+|+.++..|++.|+++.|.++|+.|.. |+..+|+.++.+|++.|++++|+++|++|.+.|+.|+..
T Consensus 149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~ 225 (697)
T PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR 225 (697)
T ss_pred HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChh
Confidence 45667888888888888888888888888888888763 677888888888888888888888888888777777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 018782 81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLC 160 (350)
Q Consensus 81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (350)
+|+.++.+|...|..+.+.+++..+.+.|+.||..+++.|+.+|++.|++++|.++|+.|.. +|..+|+.++.+|+
T Consensus 226 t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~ 301 (697)
T PLN03081 226 TFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYA 301 (697)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHH
Confidence 77666666666666666666666666666666666777777777777777777777777753 56777777777777
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHH
Q 018782 161 KNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240 (350)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 240 (350)
+.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.+
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc-c
Q 018782 241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER-S 319 (350)
Q Consensus 241 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~ 319 (350)
+|++|.+ ||..+|+.+|.+|++. |+.++|.++|++|.+.|+.||..||..++.+|.+.|+.++|.++|+.|.+ .
T Consensus 382 vf~~m~~----~d~~t~n~lI~~y~~~-G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~ 456 (697)
T PLN03081 382 VFDRMPR----KNLISWNALIAGYGNH-GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENH 456 (697)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence 7777653 5667777777777765 77777777777777777777777777777777777777777777777754 3
Q ss_pred CCCcHHHHHHHhcccccccccccchhhc
Q 018782 320 TSCTIQELANAMRGKTGFRKSRSEETEL 347 (350)
Q Consensus 320 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 347 (350)
+..|....++.++..+++.+..+++.++
T Consensus 457 g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 457 RIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 5555555666666666666665555443
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.2e-50 Score=368.44 Aligned_cols=339 Identities=17% Similarity=0.228 Sum_probs=269.5
Q ss_pred CCCCCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHH
Q 018782 2 VEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILA 81 (350)
Q Consensus 2 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (350)
++.|+.||..+++.++.+|++.|+++.|.++|+.|. .++..+|+.++.+|++.|++++|+++|++|.+.|+.||..+
T Consensus 214 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~t 290 (857)
T PLN03077 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP---RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290 (857)
T ss_pred HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC---CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhH
Confidence 456777888888888888999999999999999886 36788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc
Q 018782 82 HNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK 161 (350)
Q Consensus 82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (350)
|+.++.+|.+.|+.+.|.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|+.|.. ||..+|+.++.+|++
T Consensus 291 y~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~ 366 (857)
T PLN03077 291 ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEK 366 (857)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHh
Confidence 9999999888888888888888888888888888888888888888888888888888753 577778888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHH
Q 018782 162 NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEV 241 (350)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 241 (350)
.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888888877777887777777777777777777777777777777777766666666666666666666666
Q ss_pred HHHHHhc------------------------------CC-----------------------------------------
Q 018782 242 WESMEKR------------------------------GF----------------------------------------- 250 (350)
Q Consensus 242 ~~~~~~~------------------------------~~----------------------------------------- 250 (350)
|++|.+. ++
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~ 526 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL 526 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcccee
Confidence 6554321 12
Q ss_pred ------------------------CCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 018782 251 ------------------------YPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFL 306 (350)
Q Consensus 251 ------------------------~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 306 (350)
.||..+|+.+|.+|+.. |+.++|.++|++|.+.|+.||..||..++.+|.+.|++
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~-G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAH-GKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 34455666777777766 88888888888888888888888888888888888888
Q ss_pred hHHHHHHHHhh-ccCCCcHHHHHHHhcccccccccccchhhcc
Q 018782 307 DIIEILADKME-RSTSCTIQELANAMRGKTGFRKSRSEETELE 348 (350)
Q Consensus 307 ~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 348 (350)
++|.++|+.|. +.+..|....++.++..+.+.+..+++.++-
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~ 648 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFI 648 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88888888887 5666777777788888888777777766553
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.5e-49 Score=354.18 Aligned_cols=330 Identities=18% Similarity=0.241 Sum_probs=309.8
Q ss_pred CCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018782 5 GIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHN 83 (350)
Q Consensus 5 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (350)
++.||..+|+.++.+|++.++++.+.+++..+.. +..|+..+|+.++.+|++.|+++.|.++|++|.+ ||..+|+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n 193 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWG 193 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHH
Confidence 4789999999999999999999999999999876 8889999999999999999999999999999964 6889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccC
Q 018782 84 SLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNE 163 (350)
Q Consensus 84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (350)
.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHH
Q 018782 164 KVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWE 243 (350)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 243 (350)
++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++.
T Consensus 274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999999999864 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782 244 SMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCT 323 (350)
Q Consensus 244 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 323 (350)
.|.+.|+.||..+++.++.+|++. |++++|.++|++|. .||..+|+.++.+|++.|+.++|.++|++|.+.+..|
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~-G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKW-GRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHC-CCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999986 99999999999995 4788999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccccccccchhhc
Q 018782 324 IQELANAMRGKTGFRKSRSEETEL 347 (350)
Q Consensus 324 ~~~~~~~l~~~~~~~~~~~~~~~~ 347 (350)
+...++.++.++...+..+++.++
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~ 448 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEI 448 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHH
Confidence 999999999999988887776654
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.3e-48 Score=357.80 Aligned_cols=334 Identities=17% Similarity=0.242 Sum_probs=221.2
Q ss_pred CCCCCCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCH
Q 018782 1 MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDI 79 (350)
Q Consensus 1 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 79 (350)
|.+.|++||..||+.++.+|++.|+++.|.+++..+.+ +..|+..+|+.++.+|++.|++++|.++|++|.. ||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCe
Confidence 34455566666666666665555555555555555544 5555555555555555555555555555555542 355
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 018782 80 LAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKL 159 (350)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (350)
.+|+.++.+|.+.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+|+.|+.+|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HccCCHHHHHHHHHHHHHc------------------------------CCCCCHHHHHHHHHHHhcccCHHHHHHHHHH
Q 018782 160 CKNEKVEEAYQLLDEMIER------------------------------GANPDEWSYNAILAYHCDRAEVNMALRLITR 209 (350)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~------------------------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 209 (350)
++.|++++|.++|++|.+. ++.||..||+.++.+|++.|+.+.+.+++..
T Consensus 435 ~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~ 514 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAH 514 (857)
T ss_pred HHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHH
Confidence 5555555555555444321 2445555555554444444444444443333
Q ss_pred HHhCCC------------------------------CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHH
Q 018782 210 MTKENV------------------------------MPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSV 259 (350)
Q Consensus 210 ~~~~~~------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 259 (350)
+.+.|+ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.
T Consensus 515 ~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred HHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 333322 45667788999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHHHHhccccccc
Q 018782 260 MVHGLCKKKGKLEEACKYFEMMV-DEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFR 338 (350)
Q Consensus 260 ll~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 338 (350)
++.+|+.. |++++|.++|+.|. +.|+.|+..+|..++.++.+.|++++|.+++++|. ..|+..+++.++.++...
T Consensus 595 ll~a~~~~-g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 595 LLCACSRS-GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIH 670 (857)
T ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHc
Confidence 99998866 99999999999999 78999999999999999999999999999999995 334455666666666554
Q ss_pred cccc
Q 018782 339 KSRS 342 (350)
Q Consensus 339 ~~~~ 342 (350)
+..+
T Consensus 671 ~~~e 674 (857)
T PLN03077 671 RHVE 674 (857)
T ss_pred CChH
Confidence 4443
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=1.6e-23 Score=178.29 Aligned_cols=301 Identities=13% Similarity=0.098 Sum_probs=248.9
Q ss_pred HHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcC
Q 018782 17 LHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD---ILAHNSLLEAMCKAG 93 (350)
Q Consensus 17 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 93 (350)
...+...|++++|...|+++....|.+..++..+...+...|++++|..+++.+...+..++ ...+..++..+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34556789999999999999887788888999999999999999999999999987632222 356788899999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc----HHHHHHHHHHHHccCCHHHHH
Q 018782 94 NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN----VFTYNCIIRKLCKNEKVEEAY 169 (350)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~ 169 (350)
++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999998763 45677899999999999999999999999987653222 224566778889999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcC
Q 018782 170 QLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRG 249 (350)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 249 (350)
..++++.+.... +...+..+...+.+.|++++|.++++++...+......+++.++.+|...|++++|...++++.+.
T Consensus 201 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 999999887533 566788888999999999999999999987643333567888999999999999999999999886
Q ss_pred CCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChhHHHHHHHHhhccCCCcH
Q 018782 250 FYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG---LGFLDIIEILADKMERSTSCTI 324 (350)
Q Consensus 250 ~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~ 324 (350)
.|+...+..+...+... |++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.+....+.
T Consensus 279 -~p~~~~~~~la~~~~~~-g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQ-EGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred -CCCchHHHHHHHHHHHh-CCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 56766777777777766 9999999999999886 4788888887777664 5589999999999887544433
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=4.2e-23 Score=194.45 Aligned_cols=328 Identities=14% Similarity=0.108 Sum_probs=228.6
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA 88 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (350)
+...+..+...+...|++++|..+++.+....+.+...|..+..++...|++++|...|+++.+.. +.+...+..+..+
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 644 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADA 644 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344455566666666666666666666666556666667777777777777777777777766553 2355666666667
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHH
Q 018782 89 MCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEA 168 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 168 (350)
+...|++++|...|+++.+.. +.+..++..++..+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHH
Confidence 777777777777777766642 3345566667777777777777777777776654 44566677777777777888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782 169 YQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR 248 (350)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 248 (350)
...++.+...+ |+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++|..+|+++.+.
T Consensus 723 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 723 IQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 88887777664 344566667777778888888888888777754 346677777888888888888888888888775
Q ss_pred CCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHH
Q 018782 249 GFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELA 328 (350)
Q Consensus 249 ~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 328 (350)
. +++...+..+...+... |+ .+|+.+++++.... +.++.++..+..++...|++++|.++++++.+.++..+ .+.
T Consensus 800 ~-p~~~~~~~~l~~~~~~~-~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~ 874 (899)
T TIGR02917 800 A-PDNAVVLNNLAWLYLEL-KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAA-AIR 874 (899)
T ss_pred C-CCCHHHHHHHHHHHHhc-Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-HHH
Confidence 3 34566677777766655 77 77888888887764 56677778888888899999999999999988877644 445
Q ss_pred HHhcccccccccccchhhc
Q 018782 329 NAMRGKTGFRKSRSEETEL 347 (350)
Q Consensus 329 ~~l~~~~~~~~~~~~~~~~ 347 (350)
..+...+...+...++.++
T Consensus 875 ~~l~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 875 YHLALALLATGRKAEARKE 893 (899)
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 5555556656666655554
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.94 E-value=2.3e-22 Score=189.50 Aligned_cols=312 Identities=13% Similarity=0.089 Sum_probs=178.1
Q ss_pred CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782 7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL 86 (350)
Q Consensus 7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 86 (350)
++++.++..+...+...|++++|.+.|+++....|.+...+..++..+...|++++|.+.|+++.+.+. .+..++..+.
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 540 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALA 540 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 445555666666666666666666666665554455555555555555555555555555555554422 2444444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC---------------------------------CCCCHhhHHHHHHHHHhcCCHhHH
Q 018782 87 EAMCKAGNIDEAHGMLREMRSIG---------------------------------AEPDAFSYSIFIHAFCEANDIHSV 133 (350)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~~~~~~~~~a 133 (350)
..+.+.|+.++|...++++.+.+ .+.+..+|..+..++...|++++|
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 44444444444444444443322 123344555555555555555555
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC
Q 018782 134 FRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE 213 (350)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 213 (350)
...|+.+.+.. +.+...+..+..++.+.|++++|...++++.+.... +..++..+...+...|++++|.++++.+...
T Consensus 621 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 621 VSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555554432 233444555555555555555555555555544322 3445555555555555666666655555554
Q ss_pred CCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHH
Q 018782 214 NVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTV 293 (350)
Q Consensus 214 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 293 (350)
+ +.+...+..+...+...|++++|...|+.+... .|+..++..+...+... |++++|.+.++++.+.. +.+...+
T Consensus 699 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~-~~~~~~~ 773 (899)
T TIGR02917 699 H-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLAS-GNTAEAVKTLEAWLKTH-PNDAVLR 773 (899)
T ss_pred C-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3 234455666666666777777777777776654 34445555555555544 77777777777777664 5667777
Q ss_pred HHHHHHHHcCCChhHHHHHHHHhhccCCCcHHH
Q 018782 294 EMLRNRLVGLGFLDIIEILADKMERSTSCTIQE 326 (350)
Q Consensus 294 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 326 (350)
..+...|...|++++|..+++++.+..+..+..
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 806 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVV 806 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHH
Confidence 777777777788888888887777766655443
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=6.1e-22 Score=168.66 Aligned_cols=287 Identities=14% Similarity=0.116 Sum_probs=237.2
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018782 8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTP----TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHN 83 (350)
Q Consensus 8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (350)
.+..++..+...+...|++++|..+++.+...... ....+..++..+...|++++|..+|+++.+.. +.+..+++
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~ 145 (389)
T PRK11788 67 ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQ 145 (389)
T ss_pred ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHH
Confidence 34567888899999999999999999998763211 13568889999999999999999999999863 44788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 018782 84 SLLEAMCKAGNIDEAHGMLREMRSIGAEPDA----FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKL 159 (350)
Q Consensus 84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (350)
.++..+...|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|...|+++.+.. +.+...+..+...+
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 224 (389)
T PRK11788 146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHH
Confidence 9999999999999999999999886533321 245567778889999999999999998764 34567888889999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHH
Q 018782 160 CKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRAT 239 (350)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 239 (350)
.+.|++++|.+.++++.+.+......++..+..+|...|++++|...++.+.+.. |+...+..++..+.+.|++++|.
T Consensus 225 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~ 302 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQ 302 (389)
T ss_pred HHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999987544335678889999999999999999999998863 56667788999999999999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhc--cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 018782 240 EVWESMEKRGFYPSVSTYSVMVHGLCKK--KGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFL 306 (350)
Q Consensus 240 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 306 (350)
.+++++.+. .|+...+..++..++.. .|+.++++.+++++.+.++.|++. ..|..+|..
T Consensus 303 ~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 303 ALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred HHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 999999875 68999999888776642 358999999999999888777776 335555543
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=4.7e-20 Score=164.82 Aligned_cols=306 Identities=10% Similarity=0.029 Sum_probs=217.1
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA 88 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (350)
++..+..++.+....|+++.|...|+++....|.+...+..+...+...|++++|...++++.+.. +.+...+..+..+
T Consensus 75 ~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~ 153 (656)
T PRK15174 75 GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRT 153 (656)
T ss_pred chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 344555566666778888888888888877777778888888888888888888888888887763 3366777778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHH
Q 018782 89 MCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEA 168 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 168 (350)
+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|
T Consensus 154 l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA 231 (656)
T PRK15174 154 LVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEA 231 (656)
T ss_pred HHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHH
Confidence 88888888888888877665322 22333333 34677788888888888876654223444445556777788888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHH----HHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHH
Q 018782 169 YQLLDEMIERGANPDEWSYNAILAYHCDRAEVNM----ALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWES 244 (350)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 244 (350)
...++++.+.... +...+..+...+...|++++ |...++.+....+ .+...+..+...+...|++++|...+++
T Consensus 232 ~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 232 IQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888876533 56677777788888888775 7888888877543 3566777888888888888888888888
Q ss_pred HHhcCCCCC-HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782 245 MEKRGFYPS-VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCT 323 (350)
Q Consensus 245 ~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 323 (350)
..+. .|+ ...+..+...+... |++++|...++++...+ +.+...+..+..++...|+.++|...+++..+..+..
T Consensus 310 al~l--~P~~~~a~~~La~~l~~~-G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 310 SLAT--HPDLPYVRAMYARALRQV-GQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHh--CCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 8875 344 33444445555444 88888888888887764 3333444455677888888888888888877665443
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=8.3e-20 Score=163.26 Aligned_cols=303 Identities=9% Similarity=0.041 Sum_probs=253.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018782 14 DQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG 93 (350)
Q Consensus 14 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 93 (350)
..++..+.+.|+++.|..+++.+....|.+...+..++.+....|+++.|...++++....+ .+...+..+...+...|
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcC
Confidence 34567788899999999999999988888899999999999999999999999999998743 37788999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHH
Q 018782 94 NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLD 173 (350)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 173 (350)
++++|...++++.+.. +.+...+..+...+...|+.++|...++.+.... +.+...+..+ ..+...|++++|...++
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 9999999999999863 3456788889999999999999999999887654 2333444333 34788999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhH----HHHHHHHHHhcC
Q 018782 174 EMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDR----ATEVWESMEKRG 249 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~ 249 (350)
.+.+....++...+..+..++...|++++|...++.+..... .+...+..+...+...|++++ |...|+++.+.
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l- 279 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF- 279 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-
Confidence 988775444555556667788899999999999999998753 467778889999999999986 89999999876
Q ss_pred CCCC-HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHH
Q 018782 250 FYPS-VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQ 325 (350)
Q Consensus 250 ~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 325 (350)
.|+ ...+..+...+... |++++|...++++.... |.+...+..+..++.+.|++++|...++++...++....
T Consensus 280 -~P~~~~a~~~lg~~l~~~-g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 280 -NSDNVRIVTLYADALIRT-GQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSK 353 (656)
T ss_pred -CCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchH
Confidence 344 55666666666655 99999999999999886 667888899999999999999999999999987776643
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=5.7e-18 Score=151.83 Aligned_cols=309 Identities=15% Similarity=0.041 Sum_probs=201.7
Q ss_pred CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH---------------
Q 018782 6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEM--------------- 70 (350)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------------- 70 (350)
+.|++..|..+..++...|++++|+..++......|.+...+..+..++...|++++|+..|..+
T Consensus 156 ~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
T TIGR00990 156 CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV 235 (615)
T ss_pred cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 45677777778888888888888888888877766777777777777777777777776543322
Q ss_pred --------------------------------------------------------------------------------
Q 018782 71 -------------------------------------------------------------------------------- 70 (350)
Q Consensus 71 -------------------------------------------------------------------------------- 70 (350)
T Consensus 236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~ 315 (615)
T TIGR00990 236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315 (615)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence
Q ss_pred -----HhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 018782 71 -----LERK--CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY 143 (350)
Q Consensus 71 -----~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (350)
.+.+ .+.....|+.+..++...|++++|+..|++..+.. +.....|..+...+...|++++|...|++..+.
T Consensus 316 ~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 394 (615)
T TIGR00990 316 AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL 394 (615)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1111 01122334445555556677777777777766642 223446666666777777777777777777665
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHH
Q 018782 144 NLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYN 223 (350)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (350)
. +.+..+|..+...+...|++++|...|++..+..+. +...+..+..++.+.|++++|+..++...... +.+...++
T Consensus 395 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~ 471 (615)
T TIGR00990 395 N-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYN 471 (615)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 3 345666777777777777777777777777766432 45556666677777777777777777776643 23456777
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH------HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 018782 224 MVLKLLVRVGRFDRATEVWESMEKRGFYPSVS------TYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLR 297 (350)
Q Consensus 224 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~------~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 297 (350)
.+..++...|++++|...|++........+.. .++.... +....|++++|..++++....+ +.+...+..+.
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~-~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la 549 (615)
T TIGR00990 472 YYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA-LFQWKQDFIEAENLCEKALIID-PECDIAVATMA 549 (615)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 77777778888888888887777542111111 1111111 2222378888888888877665 44556677788
Q ss_pred HHHHcCCChhHHHHHHHHhhccC
Q 018782 298 NRLVGLGFLDIIEILADKMERST 320 (350)
Q Consensus 298 ~~~~~~g~~~~a~~~~~~~~~~~ 320 (350)
+.+.+.|++++|.++|++..+..
T Consensus 550 ~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 550 QLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHccCHHHHHHHHHHHHHHh
Confidence 88888888888888888776553
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=2.2e-17 Score=148.03 Aligned_cols=302 Identities=15% Similarity=0.044 Sum_probs=237.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782 13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA 92 (350)
Q Consensus 13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (350)
+......+.+.|+++.|+..|++.... .|++..|..+..+|...|++++|++.++..++... .+...|..+..++...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~-~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC-KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHc
Confidence 445667888999999999999998764 35688899999999999999999999999998743 3678899999999999
Q ss_pred CCHHHHHHHHHHHHhCCC-----------------------------CCCHhhHHHHHH---------------------
Q 018782 93 GNIDEAHGMLREMRSIGA-----------------------------EPDAFSYSIFIH--------------------- 122 (350)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~--------------------- 122 (350)
|++++|+..|..+...+. +++...+..+..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 999999876654432110 000000000000
Q ss_pred ---------HH------HhcCCHhHHHHHHHHHhhCC--CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 018782 123 ---------AF------CEANDIHSVFRVLDSMKRYN--LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEW 185 (350)
Q Consensus 123 ---------~~------~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 185 (350)
.. ...+++++|...|+...+.+ .+.....+..+...+...|++++|...+++..+..+. ...
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHH
Confidence 00 11257888999999988754 2334567888888999999999999999999987433 466
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-HHHHHHHHHHH
Q 018782 186 SYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPS-VSTYSVMVHGL 264 (350)
Q Consensus 186 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~ 264 (350)
.|..+...+...|++++|...++.+.+... .+...|..+...+...|++++|...|++..+. .|+ ...+..+...+
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHH
Confidence 788888889999999999999999988643 46788999999999999999999999999986 444 44555555555
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCC
Q 018782 265 CKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSC 322 (350)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 322 (350)
... |++++|+..|++..... |.++..+..+..++...|++++|.+.|++.....+.
T Consensus 444 ~~~-g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 444 YKE-GSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHC-CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 544 99999999999998875 667899999999999999999999999998876554
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.84 E-value=6e-17 Score=154.51 Aligned_cols=98 Identities=9% Similarity=0.028 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 018782 220 HTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNR 299 (350)
Q Consensus 220 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (350)
..+..+...+.+.|++++|...|+++.+... .+...+..+...+... |++++|...++.+.+.. +.+..++..+..+
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~P-~~~~a~~~la~~~~~~-g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~ 680 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTREP-GNADARLGLIEVDIAQ-GDLAAARAQLAKLPATA-NDSLNTQRRVALA 680 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhccC-CCChHHHHHHHHH
Confidence 3444555666677777777777777776421 2455556666666555 77777777777766553 4455666667777
Q ss_pred HHcCCChhHHHHHHHHhhccC
Q 018782 300 LVGLGFLDIIEILADKMERST 320 (350)
Q Consensus 300 ~~~~g~~~~a~~~~~~~~~~~ 320 (350)
+...|++++|.++++++....
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhC
Confidence 777777777777777776543
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=8.7e-18 Score=139.66 Aligned_cols=304 Identities=13% Similarity=0.069 Sum_probs=243.7
Q ss_pred HHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018782 20 LCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAH 99 (350)
Q Consensus 20 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 99 (350)
+...|++.+|..-|.+....-|.-...|..|...+-..|+...|++.|++..+..+. -...|..|...|...+.++.|+
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHH
Confidence 334566666666666665544555667778888888888888888888888876322 4677888888999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 018782 100 GMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG 179 (350)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 179 (350)
..|.+..... +.....+..+...|...|+++.|+..|++..+.. +.-...|+.|..++-..|+..+|.+.|.+.....
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 9998888753 2345577778888888999999999999998764 3346789999999999999999999999998875
Q ss_pred CCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH-HHHH
Q 018782 180 ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSV-STYS 258 (350)
Q Consensus 180 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~ 258 (350)
.. .....+.|...+...|.++.|..+|....+-.. --...++.|...|-+.|++++|...|++... +.|+. ..++
T Consensus 351 p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p-~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~ 426 (966)
T KOG4626|consen 351 PN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFP-EFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALS 426 (966)
T ss_pred Cc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhCh-hhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHH
Confidence 43 567788899999999999999999999887532 2245788899999999999999999999887 46764 4566
Q ss_pred HHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHHHHhc
Q 018782 259 VMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAMR 332 (350)
Q Consensus 259 ~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (350)
.+-..|-.. |+.+.|+..+.+.+..+ |.-...+..|...|...|+..+|+.-+++..+..|..++...|.+.
T Consensus 427 NmGnt~ke~-g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 427 NMGNTYKEM-GDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred hcchHHHHh-hhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 666666545 99999999999999876 5567889999999999999999999999999998988888776643
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=2.2e-16 Score=150.71 Aligned_cols=304 Identities=13% Similarity=0.078 Sum_probs=213.6
Q ss_pred HHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-CHHHH------------H
Q 018782 17 LHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPV-DILAH------------N 83 (350)
Q Consensus 17 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------~ 83 (350)
...+...|++++|+..|++.....|.+...+..+..++.+.|++++|+..|++..+..... ....| .
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 4556778999999999999888778889999999999999999999999999988764332 11112 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHH--------
Q 018782 84 SLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCI-------- 155 (350)
Q Consensus 84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------- 155 (350)
.....+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 22456778899999999999999864 3456677788899999999999999999987753 2233333322
Q ss_pred ----------------------------------HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHH
Q 018782 156 ----------------------------------IRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVN 201 (350)
Q Consensus 156 ----------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 201 (350)
...+...|++++|...+++..+..+. +...+..+...+.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 23344568888888888888876543 5666777788888888888
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc---------------------------------
Q 018782 202 MALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR--------------------------------- 248 (350)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------------------- 248 (350)
+|...++.+.+... .+...+..+...+...++.++|...++.+...
T Consensus 513 ~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 88888888776432 23333333333333444444444443332110
Q ss_pred ------CCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCC
Q 018782 249 ------GFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSC 322 (350)
Q Consensus 249 ------~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 322 (350)
...++...+..+...+... |++++|+..|+++.+.. |.+...+..++..+...|++++|.+.++.+.+..+.
T Consensus 592 A~~~l~~~p~~~~~~~~La~~~~~~-g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~ 669 (1157)
T PRK11447 592 AEALLRQQPPSTRIDLTLADWAQQR-GDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAND 669 (1157)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC
Confidence 0122333344444444444 89999999999988876 677888889999999999999999999988876655
Q ss_pred cHHH
Q 018782 323 TIQE 326 (350)
Q Consensus 323 ~~~~ 326 (350)
....
T Consensus 670 ~~~~ 673 (1157)
T PRK11447 670 SLNT 673 (1157)
T ss_pred ChHH
Confidence 5443
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=3.1e-16 Score=143.36 Aligned_cols=315 Identities=11% Similarity=0.026 Sum_probs=217.5
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782 8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLE 87 (350)
Q Consensus 8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 87 (350)
.+...+..+..++...|++++|.++|+.+....|.++..+..++.++...|++++|+..++++.+.. +.+.. +..+..
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~ 124 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAY 124 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHH
Confidence 3444578888888999999999999999887778888888888889999999999999999988873 33566 888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHH--------------------------------
Q 018782 88 AMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFR-------------------------------- 135 (350)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-------------------------------- 135 (350)
++...|+.++|+..++++.+.. +.+...+..+..++...+..+.|+.
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 8889999999999999998863 2244444555555555555544443
Q ss_pred --------------HHHHHhhC-CCCccHH-HH----HHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 018782 136 --------------VLDSMKRY-NLVPNVF-TY----NCIIRKLCKNEKVEEAYQLLDEMIERGAN-PDEWSYNAILAYH 194 (350)
Q Consensus 136 --------------~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~ 194 (350)
.++.+.+. ...|+.. .+ ...+.++...|++++|...|+.+.+.+.. |+. .-..+..++
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y 282 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY 282 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 33333321 1112111 11 11123445668888899999888876532 322 222246678
Q ss_pred hcccCHHHHHHHHHHHHhCCCCC---ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC-----------CCCH---HHH
Q 018782 195 CDRAEVNMALRLITRMTKENVMP---DRHTYNMVLKLLVRVGRFDRATEVWESMEKRGF-----------YPSV---STY 257 (350)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~p~~---~~~ 257 (350)
...|++++|+..|+.+....... .......+..++...|++++|..+++.+.+... .|+. ..+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 88889999999988877643211 123455666677888999999999888876421 1231 122
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHH
Q 018782 258 SVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELA 328 (350)
Q Consensus 258 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 328 (350)
..+...+... |++++|++.++++.... |.+...+..+...+...|++++|++.+++.....|.......
T Consensus 363 ~~~a~~l~~~-g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~ 431 (765)
T PRK10049 363 SLLSQVAKYS-NDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEV 431 (765)
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHH
Confidence 3333444444 88999999998888775 777888888888888889999999999888887777655433
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=2.6e-17 Score=136.89 Aligned_cols=324 Identities=14% Similarity=0.140 Sum_probs=222.9
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHH-HHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILA-HNSLLE 87 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~ 87 (350)
-.++|..+...+...|+++.|+.+++.+....|.....|..+..++...|+.+.|.+.|.+.++.+ |+... ...+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgn 192 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhH
Confidence 457788899999999999999999999988778889999999999999999999999998887753 33222 222333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC--------------------------------CCCC-HhhHHHHHHHHHhcCCHhHHH
Q 018782 88 AMCKAGNIDEAHGMLREMRSIG--------------------------------AEPD-AFSYSIFIHAFCEANDIHSVF 134 (350)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~--------------------------------~~~~-~~~~~~l~~~~~~~~~~~~a~ 134 (350)
..-..|+..+|...|.+.++.. +.|+ ...|-.|...|...+.++.|.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHH
Confidence 3333455555555544444321 1122 224444555555555555555
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC
Q 018782 135 RVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN 214 (350)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 214 (350)
..|.+..... +....++..+...|...|..+-|+..|++.++..+. =...|+.+..++-..|++.+|.+.+.+.+...
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 5555544432 223445555555566667777777777777765322 25678888888888888888888888888753
Q ss_pred CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHH
Q 018782 215 VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVE 294 (350)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 294 (350)
. ......+.|...+...|.++.|.++|....+. .|....-..-+....++.|++++|+..+++.++-. |.-...|.
T Consensus 351 p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda~~ 426 (966)
T KOG4626|consen 351 P-NHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADALS 426 (966)
T ss_pred C-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHHHH
Confidence 2 34567788888899999999999999888764 56554433333344556699999999999988764 44467899
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHHHHhcccccccccc
Q 018782 295 MLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRKSR 341 (350)
Q Consensus 295 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 341 (350)
.+...|...|+.+.|...+.+...-+|...+...| |...+...+.-
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsN-Lasi~kDsGni 472 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSN-LASIYKDSGNI 472 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhh-HHHHhhccCCc
Confidence 99999999999999999999998877766555433 33334444433
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=1.5e-15 Score=138.96 Aligned_cols=315 Identities=11% Similarity=0.041 Sum_probs=234.6
Q ss_pred CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782 7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL 86 (350)
Q Consensus 7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 86 (350)
+.++..+..+...+...|++++|+..++++....|.+.. +..+..++...|+.++|+..++++.+..+. +...+..+.
T Consensus 80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la 157 (765)
T PRK10049 80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYV 157 (765)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 345666778888899999999999999999887788888 999999999999999999999999987443 666666677
Q ss_pred HHHHhcCCHHHHHHHH----------------------------------------------HHHHhC-CCCCCHh-hHH
Q 018782 87 EAMCKAGNIDEAHGML----------------------------------------------REMRSI-GAEPDAF-SYS 118 (350)
Q Consensus 87 ~~~~~~~~~~~a~~~~----------------------------------------------~~~~~~-~~~~~~~-~~~ 118 (350)
.++...+..+.|+..+ +.+.+. ...|+.. .+.
T Consensus 158 ~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 158 QALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred HHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 7666666655444433 344322 1112211 111
Q ss_pred ----HHHHHHHhcCCHhHHHHHHHHHhhCCCC-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---CHHHHHHH
Q 018782 119 ----IFIHAFCEANDIHSVFRVLDSMKRYNLV-PNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANP---DEWSYNAI 190 (350)
Q Consensus 119 ----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l 190 (350)
..+..+...|+.++|+..|+.+.+.+.+ |+ .....+..+|...|++++|...|+++.+..... .......+
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L 316 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADL 316 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHH
Confidence 1133445778999999999999887522 22 222335778999999999999999988754221 13456667
Q ss_pred HHHHhcccCHHHHHHHHHHHHhCCC-----------CCC---hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHH
Q 018782 191 LAYHCDRAEVNMALRLITRMTKENV-----------MPD---RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVST 256 (350)
Q Consensus 191 l~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 256 (350)
..++...+++++|...++.+....+ .|+ ...+..+...+...|++++|+++++++.... +.+...
T Consensus 317 ~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l 395 (765)
T PRK10049 317 FYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGL 395 (765)
T ss_pred HHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 7788999999999999999887532 123 1245667788999999999999999998762 234555
Q ss_pred HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHH
Q 018782 257 YSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQEL 327 (350)
Q Consensus 257 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 327 (350)
+..+...+... |++++|++.+++..... |.+...+...+..+.+.|++++|..+++++.+..|..+...
T Consensus 396 ~~~lA~l~~~~-g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 396 RIDYASVLQAR-GWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 56666665555 99999999999999886 66788888899999999999999999999998877766443
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.2e-14 Score=116.03 Aligned_cols=241 Identities=18% Similarity=0.341 Sum_probs=190.2
Q ss_pred CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018782 6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNS 84 (350)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (350)
.+-+..+|..+|..+|+-...+.|.+++++... ..+....+||.+|.+-.-.. ..+++.+|......||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHH
Confidence 355788999999999999999999999999765 67788899999988764332 3789999999999999999999
Q ss_pred HHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhH-HHHHHHHHhhC----CC----CccHHH
Q 018782 85 LLEAMCKAGNIDE----AHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHS-VFRVLDSMKRY----NL----VPNVFT 151 (350)
Q Consensus 85 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~----~~~~~~ 151 (350)
++.+..+.|+++. |.+++.+|++.|++|...+|..++..+.+.++..+ +..++.++... .+ +.+...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998754 56778889999999999999999999998887644 45555554321 11 235566
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHH
Q 018782 152 YNCIIRKLCKNEKVEEAYQLLDEMIER----GANPD---EWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNM 224 (350)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (350)
|...+..|.+..+.+-|.++..-+... -+.|+ ..-|..+....++....+.....++.++..-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 778888888888888888887665532 12222 23366677777888888889999999988877788888888
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCC
Q 018782 225 VLKLLVRVGRFDRATEVWESMEKRGF 250 (350)
Q Consensus 225 l~~~~~~~~~~~~a~~~~~~~~~~~~ 250 (350)
++++....|.++-..++|..++..|.
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 88988888988888888888876653
No 22
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.77 E-value=9.7e-15 Score=123.61 Aligned_cols=283 Identities=10% Similarity=0.042 Sum_probs=211.1
Q ss_pred cCChHHHHHHHHHhhhcCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCCHHHHH
Q 018782 23 RKHVKVAHQFFDNAKHEFTPTVKTY-SILVRGLGDVGELSEARKLFDEMLERKCPVDILAH--NSLLEAMCKAGNIDEAH 99 (350)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~ 99 (350)
.|+++.|.+......... +++..+ .....+..+.|+++.|.+.+.++.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 699999998888765432 233443 33455558899999999999999875 3444332 24467888999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccH-------HHHHHHHHHHHccCCHHHHHHHH
Q 018782 100 GMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNV-------FTYNCIIRKLCKNEKVEEAYQLL 172 (350)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~ 172 (350)
..++++.+.. +-+......+...|.+.|+++++..++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998875 446778888999999999999999999999887644322 13333444444455566677777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Q 018782 173 DEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP 252 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 252 (350)
+.+.+.- +.++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+. .|
T Consensus 253 ~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P 325 (398)
T PRK10747 253 KNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HG 325 (398)
T ss_pred HhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CC
Confidence 7765442 347788888999999999999999999998874 4554322 333444569999999999998876 56
Q ss_pred CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782 253 SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER 318 (350)
Q Consensus 253 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 318 (350)
+.......+...+...+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|..++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66555544444455559999999999999886 48899989999999999999999999997643
No 23
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.77 E-value=9.3e-15 Score=124.36 Aligned_cols=291 Identities=11% Similarity=0.038 Sum_probs=209.7
Q ss_pred HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782 21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG 100 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 100 (350)
...|+++.|.+.+.+..+..+.....+-....+....|+++.|.+.+.+..+....+...........+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45899999999998876644444555666678888999999999999998776433333344446888889999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHH-HHHHHH---HccCCHHHHHHHHHHHH
Q 018782 101 MLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYN-CIIRKL---CKNEKVEEAYQLLDEMI 176 (350)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~g~~~~a~~~~~~~~ 176 (350)
.++.+.+.. +-+......+...+...|+++.+.+.+..+.+.+.. +...+. .-..++ ...+..+...+.+..+.
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999875 346678889999999999999999999999988644 333332 111221 23333333344555555
Q ss_pred HcCC---CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhH---HHHHHHHHHHcCCHhHHHHHHHHHHhcCC
Q 018782 177 ERGA---NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHT---YNMVLKLLVRVGRFDRATEVWESMEKRGF 250 (350)
Q Consensus 177 ~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 250 (350)
+... +.+...+..+...+...|+.++|.+.+++..+.. |+... .....-.....++.+.+.+.++...+.
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-- 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-- 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--
Confidence 4422 1377888889999999999999999999998864 33331 111112223457788888888888765
Q ss_pred CCCHH--HH-HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782 251 YPSVS--TY-SVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER 318 (350)
Q Consensus 251 ~p~~~--~~-~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 318 (350)
.|+.. .+ .++-..+... |++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~-~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKH-GEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCCChhHHHHHHHHHHHHHc-ccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45554 33 3555555544 99999999999655555568898899999999999999999999998643
No 24
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=6.2e-14 Score=129.14 Aligned_cols=303 Identities=13% Similarity=0.049 Sum_probs=223.7
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhh---cCCCCHHHHHHHHHHHhccCC---HHHHHHH----------------
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKH---EFTPTVKTYSILVRGLGDVGE---LSEARKL---------------- 66 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~---~~~a~~~---------------- 66 (350)
+......+.-...+.|+.++|.++|+.... ....+......++..|.+.+. ..++..+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 334444444556788999999999998754 122355566677888877765 3333333
Q ss_pred ------HHHHHhc-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 018782 67 ------FDEMLER-K-CPV--DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRV 136 (350)
Q Consensus 67 ------~~~~~~~-~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 136 (350)
++..... + .++ +...|..+..++.. ++.++|+..+.+.... .|+......+...+...|++++|...
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 1111111 1 234 67788888888877 7888999988888775 35554444445555789999999999
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCC
Q 018782 137 LDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVM 216 (350)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (350)
|+++... +|+...+..+..++.+.|++++|...++...+.... ....+..+.......|++++|...+++..+..
T Consensus 532 ~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-- 606 (987)
T PRK09782 532 WQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA-- 606 (987)
T ss_pred HHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--
Confidence 9998664 355556667778889999999999999999887522 33333334444456699999999999998854
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHH-HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHH
Q 018782 217 PDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVST-YSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEM 295 (350)
Q Consensus 217 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 295 (350)
|+...+..+..++.+.|++++|...+++.... .|+... +..+-..+... |++++|+..+++..+.. |.++..+..
T Consensus 607 P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~-G~~eeAi~~l~~AL~l~-P~~~~a~~n 682 (987)
T PRK09782 607 PSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDS-GDIAQSREMLERAHKGL-PDDPALIRQ 682 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 56888999999999999999999999999986 455444 44444455544 99999999999999886 778899999
Q ss_pred HHHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782 296 LRNRLVGLGFLDIIEILADKMERSTSCT 323 (350)
Q Consensus 296 l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 323 (350)
+..++...|++++|...+++..+..+..
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999998776654
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=1.1e-13 Score=125.06 Aligned_cols=303 Identities=12% Similarity=0.037 Sum_probs=174.4
Q ss_pred HHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018782 19 ALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA 98 (350)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 98 (350)
.+...|++++|.++|+++....|.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHH
Confidence 4555566666666666665555555555555566666666666666666666554 23333333333333334444446
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH----------------------------------------
Q 018782 99 HGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLD---------------------------------------- 138 (350)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---------------------------------------- 138 (350)
++.++++.+.. +.+...+..+..+..+.|-...|.++.+
T Consensus 189 L~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 189 LQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 66666666542 2234444455555544443222222211
Q ss_pred --------HHhh-CCCCccH-H----HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHH
Q 018782 139 --------SMKR-YNLVPNV-F----TYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMAL 204 (350)
Q Consensus 139 --------~~~~-~~~~~~~-~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 204 (350)
.+.. .+-.|.. . ...-.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 1111 0000111 1 111223455566777777777777776665545556677777888888888888
Q ss_pred HHHHHHHhCCC-----CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcC-------------CCCCHHHHHHH-HHHHh
Q 018782 205 RLITRMTKENV-----MPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRG-------------FYPSVSTYSVM-VHGLC 265 (350)
Q Consensus 205 ~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------~~p~~~~~~~l-l~~~~ 265 (350)
.+++.+..... .++......|..++...+++++|..+++.+.+.. ..||-..+..+ +..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 88888765431 1233334667778888888888888888887631 12233333333 33333
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHH
Q 018782 266 KKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQE 326 (350)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 326 (350)
.. |+..+|.+.++++.... |-|......+...+...|.+.+|+..++.....+|.....
T Consensus 428 ~~-gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~ 486 (822)
T PRK14574 428 AL-NDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLIL 486 (822)
T ss_pred Hc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHH
Confidence 33 88888888888887665 6778888888888888888888888887776665555443
No 26
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=2.5e-17 Score=133.31 Aligned_cols=257 Identities=17% Similarity=0.176 Sum_probs=56.5
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 018782 51 VRGLGDVGELSEARKLFDEMLERK-CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAND 129 (350)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (350)
...+.+.|++++|++++++..... .+.+...|..+...+...++++.|+..++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 444444444444444443322221 1223333333333444444444444444444443211 23333333333 34444
Q ss_pred HhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcccCHHHHHHHHH
Q 018782 130 IHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG-ANPDEWSYNAILAYHCDRAEVNMALRLIT 208 (350)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 208 (350)
+++|.++++...+.. ++...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444433221 233334444444444444444444444443221 12233344444444444444455555444
Q ss_pred HHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC
Q 018782 209 RMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPP 288 (350)
Q Consensus 209 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~ 288 (350)
+..+..+ .|......++..+...|+.+++..++....+.. ..|...+..+..++... |+.++|+.+|++..... |.
T Consensus 171 ~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~l-g~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 171 KALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQL-GRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHH-T-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccc-ccccccccccccccccc-cc
Confidence 4444321 123344444444444444444444444444321 11222233333333322 45555555555544433 33
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHH
Q 018782 289 YSSTVEMLRNRLVGLGFLDIIEILADK 315 (350)
Q Consensus 289 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 315 (350)
|+.+...+..++...|+.++|.++.++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp -HHHHHHHHHHHT--------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444444555555555555555444444
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=1.2e-17 Score=135.19 Aligned_cols=266 Identities=15% Similarity=0.175 Sum_probs=110.5
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHhh-hc-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782 8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAK-HE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSL 85 (350)
Q Consensus 8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (350)
|+...+ .+...+.+.|++++|+++++... .. .+.++..|..+.......++++.|.+.++++...+.. ++..+..+
T Consensus 7 ~~~~~l-~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l 84 (280)
T PF13429_consen 7 PSEEAL-RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERL 84 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 443333 55788889999999999996654 43 3556667777777888899999999999999987544 66777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC-CCccHHHHHHHHHHHHccCC
Q 018782 86 LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN-LVPNVFTYNCIIRKLCKNEK 164 (350)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 164 (350)
+.. ...+++++|.+++....+. .+++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+
T Consensus 85 ~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 161 (280)
T PF13429_consen 85 IQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD 161 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred ccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 877 7999999999999887664 3566778888899999999999999999976532 34677888899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHH
Q 018782 165 VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWES 244 (350)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 244 (350)
.++|.+.+++..+..+. +......++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|...|++
T Consensus 162 ~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 162 PDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccc
Confidence 99999999999998544 67788889999999999999999998887764 45667788999999999999999999999
Q ss_pred HHhcCCCC-CHHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 018782 245 MEKRGFYP-SVSTYSVMVHGLCKKKGKLEEACKYFEMMVD 283 (350)
Q Consensus 245 ~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 283 (350)
..+. .| |......+..++... |+.++|..+.+++..
T Consensus 240 ~~~~--~p~d~~~~~~~a~~l~~~-g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 240 ALKL--NPDDPLWLLAYADALEQA-GRKDEALRLRRQALR 276 (280)
T ss_dssp HHHH--STT-HHHHHHHHHHHT------------------
T ss_pred cccc--cccccccccccccccccc-ccccccccccccccc
Confidence 9875 34 556666666666544 999999999887653
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=2.4e-13 Score=122.86 Aligned_cols=311 Identities=10% Similarity=0.079 Sum_probs=232.7
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA 88 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (350)
++..+..++..+...++.++|++.++.+....+. ...+..++..+...++..+|++.++++.+.. |-+...+..+..+
T Consensus 135 n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~ 212 (822)
T PRK14574 135 NPDLISGMIMTQADAGRGGVVLKQATELAERDPT-VQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEI 212 (822)
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4566677788899999999999999999876444 4445555556655677777999999999985 3377888888888
Q ss_pred HHhcCCHHHHHHHHH------------------------------------------------HHHhC-CCCCCH-h---
Q 018782 89 MCKAGNIDEAHGMLR------------------------------------------------EMRSI-GAEPDA-F--- 115 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~------------------------------------------------~~~~~-~~~~~~-~--- 115 (350)
..+.|-...|.++.. .+... +..|.. .
T Consensus 213 l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~ 292 (822)
T PRK14574 213 LQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQ 292 (822)
T ss_pred HHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHH
Confidence 877665444444333 22221 111221 1
Q ss_pred -hHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-----CCCCHHHHHH
Q 018782 116 -SYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG-----ANPDEWSYNA 189 (350)
Q Consensus 116 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~ 189 (350)
...-.+-++...++..++++.|+.+...+.+....+-..+..+|...+++++|+.+++.+.... ..++......
T Consensus 293 ~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (822)
T PRK14574 293 RARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADD 372 (822)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHH
Confidence 1123345667789999999999999988876677788999999999999999999999987643 1224444678
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCC-----------CCCh---hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH
Q 018782 190 ILAYHCDRAEVNMALRLITRMTKENV-----------MPDR---HTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVS 255 (350)
Q Consensus 190 ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 255 (350)
|.-++...+++++|..+++.+.+..+ .|+. ..+..++..+...|++.+|++.++++.... +-|..
T Consensus 373 L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~ 451 (822)
T PRK14574 373 LYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQN 451 (822)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 89999999999999999999987422 1221 234556778889999999999999998752 23555
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcH
Q 018782 256 TYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTI 324 (350)
Q Consensus 256 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 324 (350)
....+...+..+ |.+.+|...++...... |-+..+....+.++...|++++|..+.+.+....|...
T Consensus 452 l~~~~A~v~~~R-g~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 452 LRIALASIYLAR-DLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHHHhc-CCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 666666665555 99999999998877775 66788889999999999999999999988877665554
No 29
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=5.8e-15 Score=124.02 Aligned_cols=291 Identities=13% Similarity=0.102 Sum_probs=229.2
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018782 24 KHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKC--PVDILAHNSLLEAMCKAGNIDEAHGM 101 (350)
Q Consensus 24 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 101 (350)
-+..+|...|+.+......+..+...+.++|-..+++++|+++|+.+.+... --+...|.+.+--+-+ +-++..
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 3678899999997777777789999999999999999999999999987631 1256677666533221 223333
Q ss_pred HH-HHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 018782 102 LR-EMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180 (350)
Q Consensus 102 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 180 (350)
+. .+.+. -+-.+.+|.++..+|.-.++.+.|++.|++..+.. +...++|+.+..-+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 33 33333 34567899999999999999999999999999865 33788999999889999999999999999887633
Q ss_pred CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782 181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVM 260 (350)
Q Consensus 181 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 260 (350)
. +-..|-.+.-.|.+.++++.|+-.|+.+.+-++ .+......+...+.+.|+.++|+++++++......-...-|...
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 3 344555677789999999999999999999764 46677788888999999999999999999876444233333332
Q ss_pred HHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHH
Q 018782 261 VHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQ 325 (350)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 325 (350)
..+... +++++|+..++++.+.- |.+..++..+++.|.+.|+.+.|+.-|.-+...+|...+
T Consensus 565 -~il~~~-~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 565 -SILFSL-GRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred -HHHHhh-cchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 223334 89999999999999874 778889999999999999999999999998887776655
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=6.8e-14 Score=128.88 Aligned_cols=272 Identities=11% Similarity=0.023 Sum_probs=215.5
Q ss_pred CCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 018782 40 FTP--TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSY 117 (350)
Q Consensus 40 ~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 117 (350)
.|+ +...|..+..++.. +++++|...+.+..... |+......+...+...|++++|...|+++... +|+...+
T Consensus 471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~ 545 (987)
T PRK09782 471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDL 545 (987)
T ss_pred CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHH
Confidence 355 78889999988887 89999999888887663 45444444555667899999999999998664 3445556
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 018782 118 SIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDR 197 (350)
Q Consensus 118 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 197 (350)
..+...+.+.|+.++|...+++..+.. +.+...+..+.......|++++|...+++..+. .|+...+..+..++.+.
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~l 622 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHC
Confidence 677888899999999999999998865 334444444445555679999999999999987 45678899999999999
Q ss_pred cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhccCcHHHHHH
Q 018782 198 AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP-SVSTYSVMVHGLCKKKGKLEEACK 276 (350)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~ 276 (350)
|++++|+..+++.....+ .+...++.+..++...|++++|...+++..+. .| +...+..+..++... |++++|..
T Consensus 623 G~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~l-Gd~~eA~~ 698 (987)
T PRK09782 623 HNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRL-DDMAATQH 698 (987)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC-CCHHHHHH
Confidence 999999999999998753 46677888888999999999999999999886 34 445556666666555 99999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcH
Q 018782 277 YFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTI 324 (350)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 324 (350)
.+++..+.. |-+..+.....+...+..+++.+.+-+++....++..+
T Consensus 699 ~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 699 YARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999876 55567777888888888889999998888877665554
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=9e-14 Score=111.23 Aligned_cols=324 Identities=18% Similarity=0.230 Sum_probs=244.4
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHh--ccCCHHHH-HHHHHHHHhc------------
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLG--DVGELSEA-RKLFDEMLER------------ 73 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~--~~~~~~~a-~~~~~~~~~~------------ 73 (350)
+++-+.|+.. ..+|.+..+--+|+.|.. +++.+...-..|++.-+ ...++--+ ++.|-.|.+.
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 4455666654 457889999999999977 77777777666665433 22222211 2223233222
Q ss_pred -------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCC
Q 018782 74 -------KCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLV 146 (350)
Q Consensus 74 -------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 146 (350)
-.+-+..++..+|.+.++--..+.|.++|++......+.+..+||.+|.+-.-..+ .+++.+|....+.
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcC
Confidence 13346789999999999999999999999999988788999999999987554333 7889999999999
Q ss_pred ccHHHHHHHHHHHHccCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHH-HHHHHHHHHh----CCCCC
Q 018782 147 PNVFTYNCIIRKLCKNEKVEE----AYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNM-ALRLITRMTK----ENVMP 217 (350)
Q Consensus 147 ~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~ 217 (350)
||..|+|+++++..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.+++.+ +..++.++.. +.++|
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 999999999999999998765 56788899999999999999999999998888754 4444444433 22222
Q ss_pred ----ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc----CCCCCH---HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC
Q 018782 218 ----DRHTYNMVLKLLVRVGRFDRATEVWESMEKR----GFYPSV---STYSVMVHGLCKKKGKLEEACKYFEMMVDEGI 286 (350)
Q Consensus 218 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~---~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~ 286 (350)
+...|...+..|.+..+.+.|.++-.-+... -+.|+. .-|..+....|.. ...+.....++.|.-.-+
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~-es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM-ESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccee
Confidence 3455677888899999999999987766532 122332 2345555566655 789999999999998777
Q ss_pred CCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHHHHhcccccccc
Q 018782 287 PPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAMRGKTGFRK 339 (350)
Q Consensus 287 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 339 (350)
-|++.+...++++..-.|.++-.-++|..+...+......+...+.......+
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k 482 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK 482 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence 89999999999999999999999999999999887777777777666666665
No 32
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=2e-13 Score=105.25 Aligned_cols=299 Identities=13% Similarity=0.106 Sum_probs=228.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHH
Q 018782 13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD---ILAHNSLLEAM 89 (350)
Q Consensus 13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 89 (350)
|..-++.+ -..+.++|.+.|-.+.+..+.+..+..+|.+.|.+.|..+.|+++-+.+.++.--+. ..+...|..-|
T Consensus 39 Yv~GlNfL-Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 39 YVKGLNFL-LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HHhHHHHH-hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 43334433 356889999999999988888889999999999999999999999999987621111 23445577788
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc----HHHHHHHHHHHHccCCH
Q 018782 90 CKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN----VFTYNCIIRKLCKNEKV 165 (350)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 165 (350)
...|-++.|+.+|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+-.+. ...|--+...+....++
T Consensus 118 m~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 99999999999999998865 33456788899999999999999999999988764433 23455566677778899
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHH
Q 018782 166 EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESM 245 (350)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 245 (350)
+.|..++.+..+.+.+ .+..-..+.......|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++....+..+
T Consensus 197 d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~ 275 (389)
T COG2956 197 DRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999987544 455555677888899999999999999999876666778899999999999999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc---CCChhHHHHHHHHhhcc
Q 018782 246 EKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG---LGFLDIIEILADKMERS 319 (350)
Q Consensus 246 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~ 319 (350)
.+....++.. ..+-...... .-.+.|..++.+-+.. .|+...+..++..... .|...+....++.|...
T Consensus 276 ~~~~~g~~~~--l~l~~lie~~-~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 276 METNTGADAE--LMLADLIELQ-EGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHccCCccHH--HHHHHHHHHh-hChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 8864434333 3333322233 4566677766666555 4899988888887654 34566677777777543
No 33
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=3.2e-13 Score=114.41 Aligned_cols=258 Identities=16% Similarity=0.096 Sum_probs=203.6
Q ss_pred HHHHHccCChHHHHHHHHHhhhcCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782 17 LHALCKRKHVKVAHQFFDNAKHEFTPTVK-TYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI 95 (350)
Q Consensus 17 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (350)
..+..+.|+++.|.+.+.++.+..|.+.. ........+...|+++.|.+.++++.+..+. ++..+..+...|.+.|++
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw 203 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAW 203 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhH
Confidence 34557899999999999999764333322 2224477889999999999999999988644 788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHH
Q 018782 96 DEAHGMLREMRSIGAEPDA-------FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEA 168 (350)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 168 (350)
++|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A 282 (398)
T PRK10747 204 SSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTA 282 (398)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999987654322 13334444444556677778888877554 255788888999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782 169 YQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR 248 (350)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 248 (350)
..++++..+. .|+.... ++.+....++.+++.+..+...+..+ -|...+..+...|.+.+++++|.+.|+.+.+.
T Consensus 283 ~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 283 QQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999885 4454322 33444566999999999999888653 46677889999999999999999999999985
Q ss_pred CCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782 249 GFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE 284 (350)
Q Consensus 249 ~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 284 (350)
.|+...+..+...+... |+.++|..++++....
T Consensus 358 --~P~~~~~~~La~~~~~~-g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 358 --RPDAYDYAWLADALDRL-HKPEEAAAMRRDGLML 390 (398)
T ss_pred --CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh
Confidence 79999988888887665 9999999999987543
No 34
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.69 E-value=2e-13 Score=116.31 Aligned_cols=283 Identities=12% Similarity=0.032 Sum_probs=199.9
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 018782 55 GDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVF 134 (350)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 134 (350)
...|+++.|.+.+.+..+.... ....+-....+....|+.+.|.+.+.+..+....+...........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4679999999999988776322 234445557788899999999999999987532222233444578888999999999
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---hcccCHHHHHHHHHHH
Q 018782 135 RVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYN-AILAYH---CDRAEVNMALRLITRM 210 (350)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~~~~ 210 (350)
..++.+.+.. |-+..+...+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+.+.+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999998876 457788899999999999999999999999988654 333332 112222 2223333334455555
Q ss_pred HhCCC---CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHH--HHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782 211 TKENV---MPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTY--SVMVHGLCKKKGKLEEACKYFEMMVDEG 285 (350)
Q Consensus 211 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~--~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 285 (350)
....+ +.+...+..+...+...|+.++|.+++++..+. .||.... ..+........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 54322 137788889999999999999999999999986 4454421 1222111123378899999999888775
Q ss_pred CCCCH--HHHHHHHHHHHcCCChhHHHHHHHH--hhccCCCcHHHHHHHhcccccccccccchh
Q 018782 286 IPPYS--STVEMLRNRLVGLGFLDIIEILADK--MERSTSCTIQELANAMRGKTGFRKSRSEET 345 (350)
Q Consensus 286 ~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 345 (350)
|-|+ ....++.+.+.+.|++++|.+.|+. ..+..+.+. ....+...+...+...++.
T Consensus 330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~--~~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN--DLAMAADAFDQAGDKAEAA 390 (409)
T ss_pred -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH--HHHHHHHHHHHcCCHHHHH
Confidence 6666 7788999999999999999999995 544444333 3445555555555544443
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=1.1e-12 Score=114.10 Aligned_cols=201 Identities=11% Similarity=0.061 Sum_probs=148.6
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAM 89 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (350)
....-.....+...|++++|.+++.++.+..|.+...|.+|...|-..|+.+++...+-.....+.. |...|..+....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 3444444455566799999999999999988999999999999999999999999888777666444 779999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHH----HHHHHHHHccCCH
Q 018782 90 CKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTY----NCIIRKLCKNEKV 165 (350)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~ 165 (350)
.+.|+++.|.-.|.+.++.. +++...+---...|-+.|+...|...|.++.....+.+..-+ ...++.+...++.
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~ 296 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER 296 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999874 455555556677888999999999999998876422222222 2334556666777
Q ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHh
Q 018782 166 EEAYQLLDEMIER-GANPDEWSYNAILAYHCDRAEVNMALRLITRMTK 212 (350)
Q Consensus 166 ~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 212 (350)
+.|.+.++..... +-..+...++.++..+.....++.+.........
T Consensus 297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 7888777776652 1222445566666666666666666666655544
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=5.5e-14 Score=118.25 Aligned_cols=266 Identities=15% Similarity=0.160 Sum_probs=212.8
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHhhhcCC---CCHHHHHHHHHHHhccCCHHHHHHHH-HHHHhcCCCCCHHHHHHHH
Q 018782 11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFT---PTVKTYSILVRGLGDVGELSEARKLF-DEMLERKCPVDILAHNSLL 86 (350)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~ 86 (350)
.+...+..+|...+++++|..+|+.+.+..| .+.++|.+.+-.+-+ +-++..+ +.+.+. -+-.+.+|.++.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~-~~~sPesWca~G 428 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDT-DPNSPESWCALG 428 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhh-CCCCcHHHHHhc
Confidence 4556778899999999999999999977433 567888888776643 2233333 333443 344789999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCH
Q 018782 87 EAMCKAGNIDEAHGMLREMRSIGAEP-DAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKV 165 (350)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 165 (350)
.+|.-+++.+.|++.|++..+. .| ...+|+.+..-+....++|.|...|+...... +-+-.+|..+.-.|.+.+++
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchh
Confidence 9999999999999999999985 44 67899999999999999999999999987642 12334555667889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHH
Q 018782 166 EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESM 245 (350)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 245 (350)
+.|+-.|+++.+.++. +......+...+.+.|+.++|+++++++.....+ |+-.-..-+..+...+++++|+..++++
T Consensus 506 e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred hHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 9999999999988765 6777778888889999999999999999887643 4444445677788899999999999999
Q ss_pred HhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC
Q 018782 246 EKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPP 288 (350)
Q Consensus 246 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~ 288 (350)
++. .|+..+...++.-.++..|+.+.|+.-|..+.+.+.++
T Consensus 584 k~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 584 KEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 985 78877777776666777799999999999998876333
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=8.2e-13 Score=106.73 Aligned_cols=308 Identities=12% Similarity=0.064 Sum_probs=224.6
Q ss_pred HHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCC
Q 018782 18 HALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCP--VDILAHNSLLEAMCKAGN 94 (350)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 94 (350)
.++....+.+++.+-.+.... |++.+...-+....+.....+++.|+.+|+++.+..+- -|..+|..++-. +..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhhh
Confidence 556666688888888888766 68888887788888888889999999999999987321 256777776633 3322
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 018782 95 IDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDE 174 (350)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 174 (350)
.. +.++.+-...--+--+.|+..+.+.|+-.++.++|..+|+...+.+ +....+|+.+..-|....+...|.+-++.
T Consensus 313 sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 SK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 11 2222221111012334578888888999999999999999998876 44677888888889999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH
Q 018782 175 MIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSV 254 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 254 (350)
..+.++. |-..|-.+.++|.-.+.+.=|+-.|++..... +.|...|..|.++|.+.++.++|.+.|......|-. +.
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~ 466 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EG 466 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-ch
Confidence 9887655 88889999999999999999999999988864 357888999999999999999999999998876432 55
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhC----C-CCC-CHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHH
Q 018782 255 STYSVMVHGLCKKKGKLEEACKYFEMMVDE----G-IPP-YSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELA 328 (350)
Q Consensus 255 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 328 (350)
..+..+...+-.. ++..+|...|.+.++. | +.| .......|..-+.+.+++++|.......... .+.-.-.
T Consensus 467 ~~l~~LakLye~l-~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eea 543 (559)
T KOG1155|consen 467 SALVRLAKLYEEL-KDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEA 543 (559)
T ss_pred HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHH
Confidence 7777787776655 8888998888876542 3 222 2334445677788889999988877776654 2333334
Q ss_pred HHhccccc
Q 018782 329 NAMRGKTG 336 (350)
Q Consensus 329 ~~l~~~~~ 336 (350)
+.|++...
T Consensus 544 k~LlReir 551 (559)
T KOG1155|consen 544 KALLREIR 551 (559)
T ss_pred HHHHHHHH
Confidence 44444433
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=7.1e-12 Score=99.64 Aligned_cols=284 Identities=12% Similarity=0.078 Sum_probs=216.9
Q ss_pred cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018782 23 RKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML 102 (350)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 102 (350)
.|+|..|.++..+..+..+.....|..-..+.-+.|+.+.+-.++.+..+....++....-+..+.....|+...|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 68999999998887665555666777778888889999999999999888755567777777888888999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccH-------HHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782 103 REMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNV-------FTYNCIIRKLCKNEKVEEAYQLLDEM 175 (350)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 175 (350)
.++.+.+ +.++........+|.+.|++.....+...+.+.|.-.+. .+|..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 9998875 346677888889999999999999999999888765443 45666666666666666666667666
Q ss_pred HHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc-CCCCCH
Q 018782 176 IERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR-GFYPSV 254 (350)
Q Consensus 176 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~ 254 (350)
... .+.++..-..++.-+.+.|+.++|.++.++..+.+..|+ .. ..-.+.+.++...-.+..+.-.+. +. ++
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p 328 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQHPE--DP 328 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhCCC--Ch
Confidence 544 334667777788888899999999999999888776554 22 222455667777777777665543 23 33
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782 255 STYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME 317 (350)
Q Consensus 255 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 317 (350)
..+.++-..|.+. +.+.+|...|+...+. .|+..+|..+..++.+.|+..+|.+..++..
T Consensus 329 ~L~~tLG~L~~k~-~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKN-KLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHh-hHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4555555555544 8999999999977776 4899999999999999999999999888765
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=4.9e-12 Score=110.18 Aligned_cols=309 Identities=14% Similarity=0.144 Sum_probs=244.1
Q ss_pred CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782 7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL 86 (350)
Q Consensus 7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 86 (350)
+..+..|.+|...|-++|+.+++...+-.+.+..|.+...|..+.....+.|+++.|.-.|.+.++..+ ++...+-.-+
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p-~n~~~~~ers 248 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANP-SNWELIYERS 248 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-cchHHHHHHH
Confidence 456778999999999999999999999998888888999999999999999999999999999999854 4666666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHh----hHHHHHHHHHhcCCHhHHHHHHHHHhh-CCCCccHHHHHHHHHHHHc
Q 018782 87 EAMCKAGNIDEAHGMLREMRSIGAEPDAF----SYSIFIHAFCEANDIHSVFRVLDSMKR-YNLVPNVFTYNCIIRKLCK 161 (350)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~ 161 (350)
..|-+.|+...|...|.++.....+.|.. .-...++.+...++.+.|.+.++.... .+-..+...++.++..+.+
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 88999999999999999999874333322 223346667778888999999888765 2224566778889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCC---------------------------CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC
Q 018782 162 NEKVEEAYQLLDEMIERGANP---------------------------DEWSYNAILAYHCDRAEVNMALRLITRMTKEN 214 (350)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 214 (350)
...++.|.............+ +...+ .++-++.+.+..+....+.......+
T Consensus 329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n 407 (895)
T KOG2076|consen 329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDN 407 (895)
T ss_pred hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhc
Confidence 999999998887776622222 22221 22333445555555556666666665
Q ss_pred --CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHH
Q 018782 215 --VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSST 292 (350)
Q Consensus 215 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 292 (350)
+.-+...|.-+..++...|++.+|..++..+......-+...|..+..+|-.. |.+++|.+.+...+... |.+...
T Consensus 408 ~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l-~e~e~A~e~y~kvl~~~-p~~~D~ 485 (895)
T KOG2076|consen 408 VWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL-GEYEEAIEFYEKVLILA-PDNLDA 485 (895)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH-hhHHHHHHHHHHHHhcC-CCchhh
Confidence 33456678899999999999999999999999875555677888888877655 99999999999999886 778888
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782 293 VEMLRNRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 293 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
-..|...+.+.|+.++|.+.++.+.-.
T Consensus 486 Ri~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 486 RITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred hhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 999999999999999999999997643
No 40
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=1.4e-12 Score=100.72 Aligned_cols=270 Identities=14% Similarity=0.139 Sum_probs=210.3
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhc--CC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHE--FT--PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNS 84 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (350)
+.++.-+|.+.|.+.|..+.|+.+.+.+... .+ ........|..-|...|-++.|+.+|..+.+.+. .-..+...
T Consensus 68 t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~Alqq 146 (389)
T COG2956 68 TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQ 146 (389)
T ss_pred hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHH
Confidence 3344457788999999999999999998652 11 2235567788889999999999999999988643 25677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 018782 85 LLEAMCKAGNIDEAHGMLREMRSIGAEPDA----FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLC 160 (350)
Q Consensus 85 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (350)
|+..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..++++..+.+ +..+.+--.+.+...
T Consensus 147 Ll~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~ 225 (389)
T COG2956 147 LLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVEL 225 (389)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHH
Confidence 999999999999999999999987654432 345566666677889999999999998765 345555566778899
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHH
Q 018782 161 KNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240 (350)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 240 (350)
..|+++.|.+.++.+.+.++..-+.+...|..+|...|+.++....+..+.+.. +....-..+.+........+.|..
T Consensus 226 ~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~ 303 (389)
T COG2956 226 AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQA 303 (389)
T ss_pred hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHH
Confidence 999999999999999998766667788899999999999999999999998864 344455556665566666777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhc--cCcHHHHHHHHHHHHhC
Q 018782 241 VWESMEKRGFYPSVSTYSVMVHGLCKK--KGKLEEACKYFEMMVDE 284 (350)
Q Consensus 241 ~~~~~~~~~~~p~~~~~~~ll~~~~~~--~~~~~~a~~~~~~~~~~ 284 (350)
.+.+-... +|+...+..+|..-... .|...+-+..++.|...
T Consensus 304 ~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 304 YLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 76665554 79999999999765443 24466677777777654
No 41
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.63 E-value=8.1e-13 Score=106.79 Aligned_cols=279 Identities=13% Similarity=0.101 Sum_probs=213.6
Q ss_pred HHHccCChHHHHHHHHHhhhc-CCC-CHHHHH-HHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782 19 ALCKRKHVKVAHQFFDNAKHE-FTP-TVKTYS-ILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI 95 (350)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~-~~~-~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (350)
.+.++|+++.|++++.-+.+. ... +...-| .+++.+..-.++..|.+.-+...... .-++.....-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 467889999999999887652 222 222222 22333333457888888887776542 12344433334445568999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782 96 DEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEM 175 (350)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 175 (350)
++|.+.|++.+...-.-.. ....+.-.+-..|++++|+..|-++... +..+..+...+...|-...++..|++++.+.
T Consensus 507 dka~~~ykeal~ndasc~e-alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTE-ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHH-HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 9999999999876432222 3333455677889999999999887543 2357788888899999999999999999887
Q ss_pred HHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH
Q 018782 176 IERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVS 255 (350)
Q Consensus 176 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 255 (350)
... ++.|+...+.|...|-+.|+..+|.+.+-.--.. ++-+..+...|...|....-++++..+|++..- +.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 765 4457888999999999999999999887665443 456888999999999999999999999999865 589999
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 018782 256 TYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGF 305 (350)
Q Consensus 256 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 305 (350)
-|..++..+.++.|++++|+++++...+. +|.+...+..|++.+...|-
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 99999999999999999999999998776 68899999999999988875
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=7.4e-12 Score=101.35 Aligned_cols=163 Identities=10% Similarity=0.058 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 018782 80 LAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKL 159 (350)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (350)
.|...+.+-|+-.++.++|...|++.++.+ +.....|+.+.+-|....+...|+.-++...+-+ +.|-..|-.+.++|
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 444444555555555555555555555543 1233445555555555555555555555555543 33445555555555
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHH
Q 018782 160 CKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRAT 239 (350)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 239 (350)
.-.+.+.-|+-.|++.....+. |...|.+|...|.+.++.++|++.|......|- .+...+..|.+.|-+.++..+|.
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa 486 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAA 486 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHH
Confidence 5555555555555555544222 455555555555555555555555555554432 23344555555555555555555
Q ss_pred HHHHHHH
Q 018782 240 EVWESME 246 (350)
Q Consensus 240 ~~~~~~~ 246 (350)
..|...+
T Consensus 487 ~~yek~v 493 (559)
T KOG1155|consen 487 QYYEKYV 493 (559)
T ss_pred HHHHHHH
Confidence 5555444
No 43
>PRK12370 invasion protein regulator; Provisional
Probab=99.61 E-value=4.8e-12 Score=111.91 Aligned_cols=268 Identities=12% Similarity=0.077 Sum_probs=190.6
Q ss_pred CCCHHHHHHHHHHHhc-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 018782 41 TPTVKTYSILVRGLGD-----VGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK---------AGNIDEAHGMLREMR 106 (350)
Q Consensus 41 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 106 (350)
+.+...|...+++... .+.+++|...|++..+..+. +...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4556666666665322 24578999999999987433 56667666665542 244789999999999
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 018782 107 SIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWS 186 (350)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 186 (350)
+.. +-+...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.++. +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 874 3467788888888999999999999999998875 446778888899999999999999999999988554 2333
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHH-HHh
Q 018782 187 YNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVH-GLC 265 (350)
Q Consensus 187 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~-~~~ 265 (350)
+..++..+...|++++|...++++.....+-+...+..+..++...|++++|...+.++... .|+.......+. .++
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHh
Confidence 33444556678999999999999877543224555777888899999999999999998764 455554444443 334
Q ss_pred hccCcHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccC
Q 018782 266 KKKGKLEEACKYFEMMVDEG-IPPYSSTVEMLRNRLVGLGFLDIIEILADKMERST 320 (350)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 320 (350)
.. | +.|...++.+.+.. ..+....+ +...+.-.|+.+.+..+ +++.+.+
T Consensus 487 ~~-g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QN-S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cc-H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 33 4 58888888776532 12222222 34445556787777776 7777654
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.61 E-value=2.5e-12 Score=101.50 Aligned_cols=204 Identities=14% Similarity=0.139 Sum_probs=163.4
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 018782 41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120 (350)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 120 (350)
......+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~ 105 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNY 105 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 3446778888899999999999999999988764 3367788888889999999999999999988764 3455677788
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCCC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC
Q 018782 121 IHAFCEANDIHSVFRVLDSMKRYNL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAE 199 (350)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 199 (350)
...+...|++++|...+++...... +.....+..+..++...|++++|...+.+..+.... +...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCC
Confidence 8888999999999999999876422 223456777788889999999999999998876433 56678888888889999
Q ss_pred HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782 200 VNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR 248 (350)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 248 (350)
+++|...+++.... .+.+...+..+...+...|+.++|..+++.+...
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999998776 3345667777888888899999999988877653
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.60 E-value=3.4e-12 Score=112.91 Aligned_cols=251 Identities=9% Similarity=0.052 Sum_probs=187.1
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018782 24 KHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGD---------VGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGN 94 (350)
Q Consensus 24 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (350)
+++++|.+.|++.....|.+...|..+..++.. .+++++|...+++..+.++. +..++..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 457899999999988778788888877766542 34589999999999988544 78889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHH
Q 018782 95 IDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN-VFTYNCIIRKLCKNEKVEEAYQLLD 173 (350)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 173 (350)
+++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.. |+ ...+..++..+...|++++|...++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999999874 3456678888999999999999999999998865 33 3334444555677899999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc-CCCC
Q 018782 174 EMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR-GFYP 252 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p 252 (350)
++.....+-+...+..+..++...|+.++|...+..+..... .+....+.+...+...| +.|...++.+.+. .-.|
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 988764332455577778888899999999999998766422 23344455556667767 4777777776642 2233
Q ss_pred CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782 253 SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG 285 (350)
Q Consensus 253 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 285 (350)
....+..++.++ . |+.+.+..+ +++.+.+
T Consensus 508 ~~~~~~~~~~~~--~-g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLVLVA--H-GEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHHHHHH--H-hhhHHHHHH-HHhhccc
Confidence 333445555443 4 777777766 8887665
No 46
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.59 E-value=2.5e-11 Score=104.15 Aligned_cols=295 Identities=15% Similarity=0.155 Sum_probs=211.3
Q ss_pred HHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--
Q 018782 15 QLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA-- 92 (350)
Q Consensus 15 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 92 (350)
.....+...|++++|++.++.....+.............+.+.|+.++|..+|..++++++. +..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcc
Confidence 34466788999999999999988888888899999999999999999999999999998643 555666666665222
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH-hHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHH
Q 018782 93 ---GNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDI-HSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEA 168 (350)
Q Consensus 93 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 168 (350)
.+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|+|+ +|+.+-..|.......-.
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 35788888999887653 3333333332223222233 34556667778888653 566666666666555556
Q ss_pred HHHHHHHHHc----C----------CCCCH--HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc
Q 018782 169 YQLLDEMIER----G----------ANPDE--WSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRV 232 (350)
Q Consensus 169 ~~~~~~~~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 232 (350)
..++...... + -.|+. +++..+...|-..|++++|+++++..+++.+ -.+..|..-.+.+-+.
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilKh~ 241 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHC
Confidence 6666655432 1 12333 3445567778899999999999999999753 2367888899999999
Q ss_pred CCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHH--------HHHHHHHHHcCC
Q 018782 233 GRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSST--------VEMLRNRLVGLG 304 (350)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~g 304 (350)
|++.+|.+.++...+.... |...-+.... |..++|++++|.+++......+..|.... ....+.+|.+.|
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aK-y~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLA-DRYINSKCAK-YLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCHHHHHHHHHHHHhCChh-hHHHHHHHHH-HHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999986433 4444444444 44556999999999999987775443222 245578999999
Q ss_pred ChhHHHHHHHHhhc
Q 018782 305 FLDIIEILADKMER 318 (350)
Q Consensus 305 ~~~~a~~~~~~~~~ 318 (350)
++..|++-|..+.+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999987777654
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.59 E-value=4.7e-11 Score=95.07 Aligned_cols=267 Identities=17% Similarity=0.142 Sum_probs=219.2
Q ss_pred HHHHHHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018782 13 LDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK 91 (350)
Q Consensus 13 ~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (350)
|-.-.++.-+.|+.+.+-.++.++.+ ...++....-+..+.....|+.+.|..-++++.+.+.. .+.......++|.+
T Consensus 121 ~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~ 199 (400)
T COG3071 121 YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIR 199 (400)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHH
Confidence 44445677789999999999999876 35667788888899999999999999999999988654 78889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC
Q 018782 92 AGNIDEAHGMLREMRSIGAEPDA-------FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK 164 (350)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (350)
.|++..+..++..+.+.|.-.+. .+|..++.-....+..+.-...|+..... .+.++..-.+++.-+.++|+
T Consensus 200 ~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~ 278 (400)
T COG3071 200 LGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGD 278 (400)
T ss_pred hccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCC
Confidence 99999999999999999865553 46788888887777888888888888654 34567777788889999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHH
Q 018782 165 VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWES 244 (350)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 244 (350)
.++|.++.++..+.+..|+ -...-.+.+.++...-++..+.-.+.. +.++..+..|...|.+.+.|.+|...|+.
T Consensus 279 ~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~lea 353 (400)
T COG3071 279 HDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEA 353 (400)
T ss_pred hHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999877655 222334567788888888887766553 34557889999999999999999999998
Q ss_pred HHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC
Q 018782 245 MEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPY 289 (350)
Q Consensus 245 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 289 (350)
..+. .|+..+|+.+-.++... |+..+|.+..++....-.+|+
T Consensus 354 Al~~--~~s~~~~~~la~~~~~~-g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 354 ALKL--RPSASDYAELADALDQL-GEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHhc--CCChhhHHHHHHHHHHc-CChHHHHHHHHHHHHHhcCCC
Confidence 8775 89999999999998876 999999999998775443443
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.58 E-value=8.2e-12 Score=98.55 Aligned_cols=204 Identities=14% Similarity=0.127 Sum_probs=155.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHH
Q 018782 76 PVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCI 155 (350)
Q Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (350)
......+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~ 105 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNY 105 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 3346777888888889999999999999888753 3456677788888888999999999998887764 4456677788
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 018782 156 IRKLCKNEKVEEAYQLLDEMIERGANP-DEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGR 234 (350)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 234 (350)
...+...|++++|...+++.......+ ....+..+...+...|++++|...+........ .+...+..+...+...|+
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCC
Confidence 888889999999999999887653222 345666677788888999999999988887642 345677788888889999
Q ss_pred HhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782 235 FDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE 284 (350)
Q Consensus 235 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 284 (350)
+++|...+++..+. ...+...+..+...+... |+.++|..+.+.+...
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARAL-GDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHH-hhHHHHHHHHHHHHhh
Confidence 99999999988875 233455555555554444 8899998888877653
No 49
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.57 E-value=1.6e-10 Score=97.77 Aligned_cols=309 Identities=14% Similarity=0.084 Sum_probs=221.9
Q ss_pred CCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhh-cC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHH
Q 018782 5 GIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKH-EF--TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILA 81 (350)
Q Consensus 5 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (350)
|+..+...|-.=...|-..|..-.+..+...... +. ..--.+|..-...|.+.+.++-|..+|...++- ++-+...
T Consensus 474 gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~sl 552 (913)
T KOG0495|consen 474 GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSL 552 (913)
T ss_pred ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHH
Confidence 4444444444444444444544444444444332 11 122345555556666666677777777776665 3346666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc
Q 018782 82 HNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK 161 (350)
Q Consensus 82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (350)
|......--..|..+....+|+++... .+-....|-...+.+-..||...|..++....+.. +.+...|-+.+.....
T Consensus 553 Wlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~e 630 (913)
T KOG0495|consen 553 WLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFE 630 (913)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhc
Confidence 766666666677778888888887776 33345566666677777889999998888887764 4467788888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHH
Q 018782 162 NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEV 241 (350)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 241 (350)
+.+++.|..+|.+.... .|+...|.--+....-.++.++|.+++++.++. ++.-...|-.+.+.+.+.++++.|...
T Consensus 631 n~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 631 NDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred cccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 89999999999887764 567777776666666778889999999888875 222345777888888899999999998
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCC
Q 018782 242 WESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTS 321 (350)
Q Consensus 242 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 321 (350)
|..-.+. .|+......++.-+-...|.+-.|..++++..-.+ |-+...|...++.-.+.|..+.|..+..+..+.-+
T Consensus 708 Y~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp 784 (913)
T KOG0495|consen 708 YLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECP 784 (913)
T ss_pred HHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 8877654 67777777777777667689999999999998887 77889999999999999999999998888776533
Q ss_pred C
Q 018782 322 C 322 (350)
Q Consensus 322 ~ 322 (350)
.
T Consensus 785 ~ 785 (913)
T KOG0495|consen 785 S 785 (913)
T ss_pred c
Confidence 3
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=5.4e-13 Score=115.74 Aligned_cols=242 Identities=15% Similarity=0.171 Sum_probs=149.4
Q ss_pred CCCCCCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCH
Q 018782 1 MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDI 79 (350)
Q Consensus 1 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 79 (350)
|...|+.|+..||.++|..||..|+++.|- +|.-|.. ..|.+...|+.++......++.+.+. .|.+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 356799999999999999999999999998 9988865 67788889999999999988877776 5789
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH-HH-------hCCCCCCHhhHHHH--------------HHHHHhcCCHhHHHHHH
Q 018782 80 LAHNSLLEAMCKAGNIDEAHGMLRE-MR-------SIGAEPDAFSYSIF--------------IHAFCEANDIHSVFRVL 137 (350)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~a~~~~~~-~~-------~~~~~~~~~~~~~l--------------~~~~~~~~~~~~a~~~~ 137 (350)
.+|..|..+|...|+... ++..++ +. ..|+......+-.. +....-.|-++.+++++
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999755 222222 21 12221111111111 11112223333333333
Q ss_pred HHHhhCCC-CccHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCC
Q 018782 138 DSMKRYNL-VPNVFTYNCIIRKLCKN-EKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENV 215 (350)
Q Consensus 138 ~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 215 (350)
..+..... .|... .++-+... ..+++...+.....+ .|++.+|..++......|+.+.|..++..|.+.|+
T Consensus 163 ~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred hhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 33321110 01111 12222222 222333333333322 46777777777777777777777777777777777
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 018782 216 MPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLC 265 (350)
Q Consensus 216 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 265 (350)
+.+..-|..|+-+ .++...+..+++.|.+.|+.|+..|+...+....
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l 282 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL 282 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence 6665555555443 6667777777777777777777777776665544
No 51
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.55 E-value=7.6e-11 Score=103.74 Aligned_cols=302 Identities=13% Similarity=0.114 Sum_probs=149.3
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhhcC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEF---TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL 86 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 86 (350)
|...+.|...+.-.|++..+..+...+.... +.-...|..+.++|...|+++.|...|.+..+....-..-.+.-+.
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Glg 349 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLG 349 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchh
Confidence 3344444445555555555555555443311 1222335555555555555555555554444432111122233344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----CHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHcc
Q 018782 87 EAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN----DIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKN 162 (350)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (350)
+.+.+.|+.+.+...|+.+.+. .+.+..+...|...|...+ ..+.|..++.+..+.- +.|...|-.+...+...
T Consensus 350 Qm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 350 QMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT 427 (1018)
T ss_pred HHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc
Confidence 5555555555555555555543 1223334444444444432 2344444444444332 33444554444444433
Q ss_pred CCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC---CCCCCh------hHHHHHHHHH
Q 018782 163 EKVEEAYQLLDEMI----ERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE---NVMPDR------HTYNMVLKLL 229 (350)
Q Consensus 163 g~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~ 229 (350)
.- ..++..|..+. ..+..+.+...|.+.......|+++.|...|...... ...++. .+-..+..+.
T Consensus 428 d~-~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~ 506 (1018)
T KOG2002|consen 428 DP-WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL 506 (1018)
T ss_pred Ch-HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence 22 22244443332 2333455566666666666666666666666665443 111111 1222345555
Q ss_pred HHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 018782 230 VRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDII 309 (350)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 309 (350)
...++.+.|.+.|..+.+. .|....-..-+.+..+..++..+|...++.....+ ..++..+..+...+.+...+..|
T Consensus 507 E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 507 EELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhccc
Confidence 5566666777777666654 45444333333334444466777777777766654 55666666677677777777777
Q ss_pred HHHHHHhh
Q 018782 310 EILADKME 317 (350)
Q Consensus 310 ~~~~~~~~ 317 (350)
.+-|+.+.
T Consensus 584 ~k~f~~i~ 591 (1018)
T KOG2002|consen 584 KKKFETIL 591 (1018)
T ss_pred ccHHHHHH
Confidence 66444443
No 52
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=1.5e-10 Score=97.95 Aligned_cols=301 Identities=11% Similarity=0.058 Sum_probs=147.9
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018782 12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK 91 (350)
Q Consensus 12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (350)
.|.....+--..|..+....+|+++....|.....|......+-..|++..|..++....+.... +...|...+..-..
T Consensus 552 lWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~e 630 (913)
T KOG0495|consen 552 LWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFE 630 (913)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhc
Confidence 34444444344455555555555554444444444544444444455555555555555544222 44555555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 018782 92 AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQL 171 (350)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 171 (350)
+.+++.|..+|.+.... .|+...|..-+..-.-.++.++|.+++++..+.- +--...|-.+.+.+-+.++.+.|.+.
T Consensus 631 n~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 631 NDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred cccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55555555555555442 3444444444444444455555555555544431 11122334444444455555555544
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcC--
Q 018782 172 LDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRG-- 249 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 249 (350)
|..-.+. ++.....|..+...--+.|++-.|..++++..-.++ -+...|...|+.-.+.|+.+.|..+..+..+.-
T Consensus 708 Y~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 708 YLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred HHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4443332 111233344444443444445555555555444432 234444445555555555555544444433320
Q ss_pred ---------------------------CCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 018782 250 ---------------------------FYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG 302 (350)
Q Consensus 250 ---------------------------~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (350)
..-|....-.+...|... .+++.|.+.|.+....+ +.+..+|..+...+.+
T Consensus 786 sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e-~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~ 863 (913)
T KOG0495|consen 786 SGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSE-KKIEKAREWFERAVKKD-PDNGDAWAWFYKFELR 863 (913)
T ss_pred cchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHccC-CccchHHHHHHHHHHH
Confidence 012333333344444434 67777777777777776 5667777777777777
Q ss_pred CCChhHHHHHHHHhhccC
Q 018782 303 LGFLDIIEILADKMERST 320 (350)
Q Consensus 303 ~g~~~~a~~~~~~~~~~~ 320 (350)
.|.-+.-.+++.+.....
T Consensus 864 hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 864 HGTEEDQKEVLKKCETAE 881 (913)
T ss_pred hCCHHHHHHHHHHHhccC
Confidence 776666666666655443
No 53
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=3.6e-12 Score=98.76 Aligned_cols=235 Identities=11% Similarity=0.042 Sum_probs=191.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc
Q 018782 82 HNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK 161 (350)
Q Consensus 82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (350)
-+.+..+|.+.|.+.+|.+.++..++. .|-+.||..|-+.|.+..+...|+.++.+-.+. .+.++.....+.+.+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 366889999999999999999998875 567778999999999999999999999988775 24455455567788888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHH
Q 018782 162 NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEV 241 (350)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 241 (350)
.++.++|.++++...+.... ++.....+...|.-.++++.|+.+++++.+.|+ -++..|+.+.-+|...++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999998887433 667777777888889999999999999999997 4788999999999999999999999
Q ss_pred HHHHHhcCCCCCH--HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782 242 WESMEKRGFYPSV--STYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 242 ~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
|++....--.|+. ..|..+-.... .-|++..|.+.|+-....+ +.+...++.|.-.-.+.|+.+.|..+++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV-~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAV-TIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEE-eccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9988754333432 23444433333 3499999999999998887 678889999999999999999999999988876
Q ss_pred CCCc
Q 018782 320 TSCT 323 (350)
Q Consensus 320 ~~~~ 323 (350)
.|..
T Consensus 459 ~P~m 462 (478)
T KOG1129|consen 459 MPDM 462 (478)
T ss_pred Cccc
Confidence 5543
No 54
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.53 E-value=5e-11 Score=104.85 Aligned_cols=316 Identities=13% Similarity=0.100 Sum_probs=204.7
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhh-----hcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc---CCC----
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAK-----HEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER---KCP---- 76 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---- 76 (350)
|...|-.+...+-.. +...++..|..+. ++.++.+...|.+...+...|+++.|...|...... ...
T Consensus 413 d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 333444444444333 3333355555542 133455666677777777777777777777666543 111
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHH
Q 018782 77 --VDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDA-FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYN 153 (350)
Q Consensus 77 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 153 (350)
++..+-..+..+.-..++.+.|.+.|..+.+.. |+- ..|.-++......++..+|...++...... ..++..++
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ars 568 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARS 568 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHH
Confidence 122223335555556666777777777776642 322 223333323333456677777777765543 34555666
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhc------------ccCHHHHHHHHHHHHhCCCCCChh
Q 018782 154 CIIRKLCKNEKVEEAYQLLDEMIER-GANPDEWSYNAILAYHCD------------RAEVNMALRLITRMTKENVMPDRH 220 (350)
Q Consensus 154 ~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~ 220 (350)
.+...+.+...+..|..-|+.+.+. ...+|..+...|.+.|.+ .+..++|+++|.++++..+ .|.+
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~y 647 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMY 647 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhh
Confidence 6666777777777777766665543 223466666666665542 2346788999998888754 4777
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 018782 221 TYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE-GIPPYSSTVEMLRNR 299 (350)
Q Consensus 221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 299 (350)
.-|-+.-+++..|++..|..+|.+..+... -...+|-.+.++|... |++..|+++|+...+. .-..+..+...|.++
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~-~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQ-GQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 778888899999999999999999997643 1334566677777766 9999999999986644 445678899999999
Q ss_pred HHcCCChhHHHHHHHHhhccCCCcHHHHHHHh
Q 018782 300 LVGLGFLDIIEILADKMERSTSCTIQELANAM 331 (350)
Q Consensus 300 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (350)
+.+.|.+.+|.+.+.......|..+.-..|..
T Consensus 726 ~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a 757 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKARHLAPSNTSVKFNLA 757 (1018)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence 99999999999999998888777776655553
No 55
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=4.6e-12 Score=98.16 Aligned_cols=232 Identities=11% Similarity=0.041 Sum_probs=193.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 018782 47 YSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE 126 (350)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (350)
-+.+.++|.+.|.+.+|.+.|+..++. .|-+.+|..|-.+|.+..++..|+.++.+-.+. .+-++....-+...+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 377899999999999999999998876 467788999999999999999999999999886 44455555667788889
Q ss_pred cCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHH
Q 018782 127 ANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRL 206 (350)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 206 (350)
.++.+++.++|+...+.. +.++.....+...|.-.++++-|+.+++++.+.|+. ++..|+.+.-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999998865 557777777888888999999999999999999987 888999999999999999999999
Q ss_pred HHHHHhCCCCCC--hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782 207 ITRMTKENVMPD--RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE 284 (350)
Q Consensus 207 ~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 284 (350)
|++....-..|+ ..+|..+.......|++..|.+.|+-....+.. +...++.+.-. ..+.|++++|..+++...+.
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL-~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVL-AARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHH-HhhcCchHHHHHHHHHhhhh
Confidence 999877543343 456888888899999999999999998876332 45666665543 34459999999999988765
Q ss_pred C
Q 018782 285 G 285 (350)
Q Consensus 285 ~ 285 (350)
.
T Consensus 459 ~ 459 (478)
T KOG1129|consen 459 M 459 (478)
T ss_pred C
Confidence 3
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.3e-10 Score=96.61 Aligned_cols=287 Identities=11% Similarity=0.068 Sum_probs=180.7
Q ss_pred CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782 7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL 86 (350)
Q Consensus 7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 86 (350)
.-++.....-.+-|...+++.+..++++.+....|++...+..-|.++...|+..+-.-+=.++.+. .|..+.+|.++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 3444555555566667777777777777777766777777777777777777777666666666665 344667777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHH
Q 018782 87 EAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVE 166 (350)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (350)
--|...|+..+|.+.|.+....... =...|-.+...|+-.+..++|+..+....+.- +....-+--+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 7777777777777777776653211 12356677777777777777777776664421 111111122233456677777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC----C--CCCChhHHHHHHHHHHHcCCHhHHHH
Q 018782 167 EAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE----N--VMPDRHTYNMVLKLLVRVGRFDRATE 240 (350)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~~~~~~a~~ 240 (350)
.|...|.+.....+. |+...+-+.-.....+.+.+|..+|+..+.. + ...-..+++.|.++|.+.+.+++|..
T Consensus 398 LAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 777777777665433 5666666666666677777777777766521 0 00123456777777777777777777
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 018782 241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLV 301 (350)
Q Consensus 241 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (350)
.+++..... ..+..++.++.-.+... |+++.|.+.|.+.... .|+..+...++..+.
T Consensus 477 ~~q~aL~l~-~k~~~~~asig~iy~ll-gnld~Aid~fhKaL~l--~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 477 YYQKALLLS-PKDASTHASIGYIYHLL-GNLDKAIDHFHKALAL--KPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHcC-CCchhHHHHHHHHHHHh-cChHHHHHHHHHHHhc--CCccHHHHHHHHHHH
Confidence 777776542 23555565555555544 7777787777776654 455555555554443
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.6e-10 Score=94.47 Aligned_cols=196 Identities=13% Similarity=0.158 Sum_probs=129.4
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 018782 117 YSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD 196 (350)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 196 (350)
|-.+...|....+.++..+.|....+.+ +.+..+|..-...+.-.+++++|..=|++.....+. +...|.-+..+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHH
Confidence 3444445555556666666666665544 334555555555555666677777777766665332 34445555555557
Q ss_pred ccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC-----CC--HHHHHHHHHHHhhccC
Q 018782 197 RAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFY-----PS--VSTYSVMVHGLCKKKG 269 (350)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----p~--~~~~~~ll~~~~~~~~ 269 (350)
.+.++++...|++..+. ++.-+..|+.....+...+++++|.+.|+..++.... .+ ......++. .+-.+
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~--~qwk~ 517 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV--LQWKE 517 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh--hchhh
Confidence 77888888888887775 4455678888888888888899988888888764211 11 112222222 12237
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782 270 KLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER 318 (350)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 318 (350)
++..|.+++.+.++.+ |-....+..|...-...|+.++|+++|++...
T Consensus 518 d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 518 DINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 8888999998888877 55667788888888899999999999987654
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=6.6e-10 Score=89.11 Aligned_cols=312 Identities=12% Similarity=0.032 Sum_probs=224.6
Q ss_pred CcCHhhHHHHHHHHH--ccCChHHHHHHHHH--hhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHH
Q 018782 7 KPSIYDLDQLLHALC--KRKHVKVAHQFFDN--AKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAH 82 (350)
Q Consensus 7 ~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 82 (350)
+|...+...-+.+++ ..++...|.+.+-. ....++.|......+..++...|+..+|+..|++....++. +....
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~M 269 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAM 269 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhH
Confidence 333333333344333 34444444444443 44578899999999999999999999999999998776321 23333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHcc
Q 018782 83 NSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKN 162 (350)
Q Consensus 83 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (350)
......+.+.|+.+....+...+.... .-+...|..-+.......+++.|+.+-++.++.. +.+...+-.-...+...
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 333444667888988888888887542 2344445555555567788999999999988765 34556666666788899
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHH-HHH-HHcCCHhHHHH
Q 018782 163 EKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVL-KLL-VRVGRFDRATE 240 (350)
Q Consensus 163 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~ 240 (350)
|++++|.-.|+......+ -+...|..|+..|...|.+.+|...-....+. .+.+..+.+.+. ..| .....-++|.+
T Consensus 348 ~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred cchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 999999999999887643 37889999999999999999998888776554 334555555542 222 23344678999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccC
Q 018782 241 VWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERST 320 (350)
Q Consensus 241 ~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 320 (350)
+++..... .|+..---..+.-++...|..+.++.++++.... .||......|.+.+...+.+++|+..|....+.+
T Consensus 426 f~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 426 FAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99887764 6775544444444555569999999999988764 5899999999999999999999999999999988
Q ss_pred CCcHHHH
Q 018782 321 SCTIQEL 327 (350)
Q Consensus 321 ~~~~~~~ 327 (350)
|.+....
T Consensus 502 P~~~~sl 508 (564)
T KOG1174|consen 502 PKSKRTL 508 (564)
T ss_pred ccchHHH
Confidence 8776554
No 59
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=4.6e-09 Score=85.88 Aligned_cols=162 Identities=9% Similarity=0.077 Sum_probs=73.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHH----H-H---HhcccCHHHHHHHHHHHHhCCCCCChh
Q 018782 151 TYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEW--SYNAIL----A-Y---HCDRAEVNMALRLITRMTKENVMPDRH 220 (350)
Q Consensus 151 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll----~-~---~~~~~~~~~a~~~~~~~~~~~~~~~~~ 220 (350)
+|--.++.....|+.+...++|++.+.. ++|-.. .|.-.| + + -....+.+.+.++++..++. ++....
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkF 401 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKF 401 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccc
Confidence 3444444445556666666666666554 222110 111111 0 0 01334455555555544442 222222
Q ss_pred HHHHHH----HHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 018782 221 TYNMVL----KLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEML 296 (350)
Q Consensus 221 ~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 296 (350)
||.-+- ....++.++..|.+++...+. ..|...+|...|..=... ++++....++++.++.+ |-+..+|...
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL-~efDRcRkLYEkfle~~-Pe~c~~W~ky 477 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQL-REFDRCRKLYEKFLEFS-PENCYAWSKY 477 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHH-hhHHHHHHHHHHHHhcC-hHhhHHHHHH
Confidence 222221 122234455555555544442 345555555555443322 55555555555555554 4455555555
Q ss_pred HHHHHcCCChhHHHHHHHHhhc
Q 018782 297 RNRLVGLGFLDIIEILADKMER 318 (350)
Q Consensus 297 ~~~~~~~g~~~~a~~~~~~~~~ 318 (350)
...-...|+.+.|..+|+-...
T Consensus 478 aElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhc
Confidence 5555555555555555554443
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.45 E-value=8.3e-10 Score=94.97 Aligned_cols=262 Identities=15% Similarity=0.194 Sum_probs=188.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHh-
Q 018782 49 ILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSY-SIFIHAFCE- 126 (350)
Q Consensus 49 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~- 126 (350)
-....+...|++++|++.++.-... +.............+.+.|+.++|..+|..+++.+ |+...| ..+..+..-
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhh
Confidence 3445667889999999999886655 44456677788899999999999999999999975 455544 444444422
Q ss_pred ----cCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHH
Q 018782 127 ----ANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKV-EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVN 201 (350)
Q Consensus 127 ----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 201 (350)
..+.+....+++++...- |.......+.-.+..-..+ ..+...+..+..+|+++ +|+.+-..|.......
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH
Confidence 225677888898886653 4444444333333332233 34566677777887653 6666766676666666
Q ss_pred HHHHHHHHHHhC----C----------CCCCh--hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 018782 202 MALRLITRMTKE----N----------VMPDR--HTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLC 265 (350)
Q Consensus 202 ~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 265 (350)
....++...... + -.|+. +++..+...|-..|++++|.+++++.+++ .|+..-+..+-.-..
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 666666665432 1 12343 35567788899999999999999999987 677555544444455
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCC
Q 018782 266 KKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTS 321 (350)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 321 (350)
++.|++.+|.+.++..+..+ .-|...-+..+..+.+.|+.++|.+++....+.+.
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 67799999999999999988 56777778888999999999999999999887664
No 61
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.44 E-value=2.1e-10 Score=93.29 Aligned_cols=96 Identities=14% Similarity=0.043 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 018782 81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLC 160 (350)
Q Consensus 81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (350)
.|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|...|++..+.. +.+..++..+..++.
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444555555555555555554432 2234445555555555555555555555554432 123344444444444
Q ss_pred ccCCHHHHHHHHHHHHHc
Q 018782 161 KNEKVEEAYQLLDEMIER 178 (350)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~ 178 (350)
..|++++|.+.++...+.
T Consensus 144 ~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 555555555555554443
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=6.4e-10 Score=92.53 Aligned_cols=276 Identities=12% Similarity=0.035 Sum_probs=218.3
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 018782 41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120 (350)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 120 (350)
..+.........-+...+++.+..++++.+.+. .++....+..-|.++...|+..+-..+=.++.+. .|-.+.+|.++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 345566666777788889999999999999987 4567777777788999999998888888888876 45677899999
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCH
Q 018782 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEV 200 (350)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 200 (350)
.-.|...|...+|.++|.+..... +.-...|-.....|.-.|..+.|+..+...-+.-..-....+ -+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L-Ylgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL-YLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH-HHHHHHHHhccH
Confidence 999999999999999999987654 224568888899999999999999999888775222111122 233447788999
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCC----CHHHHHHHHHHHhhccCcHHHH
Q 018782 201 NMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR--GFYP----SVSTYSVMVHGLCKKKGKLEEA 274 (350)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p----~~~~~~~ll~~~~~~~~~~~~a 274 (350)
+.|.++|.+..... +.|+...+-+.-.....+.+.+|..+|+..... .+.+ -..+++.+-.++ ++.+.+++|
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~-Rkl~~~~eA 474 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY-RKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH-HHHhhHHHH
Confidence 99999999988763 357778888888888889999999999887721 1111 233456666665 455999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782 275 CKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCT 323 (350)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 323 (350)
+..+++.+... +.+..++.++.-.|...|+++.|.+.|.+.....+..
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 99999999886 8899999999999999999999999999988754443
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.43 E-value=1.6e-10 Score=98.14 Aligned_cols=241 Identities=17% Similarity=0.149 Sum_probs=115.2
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----
Q 018782 41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLER-----KC-PVDI-LAHNSLLEAMCKAGNIDEAHGMLREMRSI----- 108 (350)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 108 (350)
|.-..+...+...|...|+++.|+.+++...+. |. .|.. ...+.+...|...+++++|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333444455555666666666666666554433 10 1122 22233455555666666666666655431
Q ss_pred C-CCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHhh-----CCC-CccH-HHHHHHHHHHHccCCHHHHHHHHHHHHHc-
Q 018782 109 G-AEP-DAFSYSIFIHAFCEANDIHSVFRVLDSMKR-----YNL-VPNV-FTYNCIIRKLCKNEKVEEAYQLLDEMIER- 178 (350)
Q Consensus 109 ~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~- 178 (350)
| ..| -..+++.|...|.+.|++++|...++...+ .|. .|.+ ..++.+...+...+++++|..++....+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 1 111 122455555556666666555555544321 110 1111 22344445555566666666665544321
Q ss_pred --CCCC----CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC----C--C-CChhHHHHHHHHHHHcCCHhHHHHHHHHH
Q 018782 179 --GANP----DEWSYNAILAYHCDRAEVNMALRLITRMTKEN----V--M-PDRHTYNMVLKLLVRVGRFDRATEVWESM 245 (350)
Q Consensus 179 --~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 245 (350)
-+.+ -..+++.+...|...|++++|.++++.++... - . -....++.+...|.+.+.+.+|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 1111 12445566666666666666666666554320 1 1 11234555566666666666666666554
Q ss_pred Hh----cCC-CCC-HHHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 018782 246 EK----RGF-YPS-VSTYSVMVHGLCKKKGKLEEACKYFEMMV 282 (350)
Q Consensus 246 ~~----~~~-~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 282 (350)
.. .|. .|+ ..+|..|...|-.. |+++.|.++.+.+.
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~-g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQ-GNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHc-ccHHHHHHHHHHHH
Confidence 32 111 112 23455555555444 66666666665554
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.42 E-value=9.5e-13 Score=75.67 Aligned_cols=49 Identities=37% Similarity=0.823 Sum_probs=34.5
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 018782 217 PDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLC 265 (350)
Q Consensus 217 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 265 (350)
||..+|+.++++|++.|++++|.++|++|.+.|+.||..||+.+|.+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666777777777777777777777777777777777777777776665
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.40 E-value=1.2e-09 Score=88.80 Aligned_cols=228 Identities=14% Similarity=0.083 Sum_probs=160.1
Q ss_pred cCChHHHHHHHHHhhhcCC----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018782 23 RKHVKVAHQFFDNAKHEFT----PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA 98 (350)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 98 (350)
.+..+.++.-+..+....+ .....|..+...+...|+.++|...|++..+..+ .+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 3455677777777664322 2246688889999999999999999999998754 3789999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 018782 99 HGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER 178 (350)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (350)
...|++..+.. +-+..++..+..++...|++++|.+.|+...+.. |+..........+...+++++|...+.+....
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 99999999864 2346678888889999999999999999998864 44332223333345678899999999776543
Q ss_pred CCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC---CC---CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Q 018782 179 GANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE---NV---MPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP 252 (350)
Q Consensus 179 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 252 (350)
. .|+...+ .+... ..|+...+ ..+..+.+. .+ +.....|..+...+.+.|++++|...|++..+.+ .|
T Consensus 195 ~-~~~~~~~-~~~~~--~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~ 268 (296)
T PRK11189 195 L-DKEQWGW-NIVEF--YLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VY 268 (296)
T ss_pred C-CccccHH-HHHHH--HccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cc
Confidence 2 2333222 22222 34444333 244444321 11 1123578888999999999999999999998763 23
Q ss_pred CHHHHHHH
Q 018782 253 SVSTYSVM 260 (350)
Q Consensus 253 ~~~~~~~l 260 (350)
|...+...
T Consensus 269 ~~~e~~~~ 276 (296)
T PRK11189 269 NFVEHRYA 276 (296)
T ss_pred hHHHHHHH
Confidence 55555443
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.40 E-value=1.3e-12 Score=75.09 Aligned_cols=49 Identities=37% Similarity=0.861 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 018782 77 VDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFC 125 (350)
Q Consensus 77 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (350)
||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 67
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=5.6e-10 Score=85.80 Aligned_cols=305 Identities=13% Similarity=0.100 Sum_probs=221.4
Q ss_pred CCCCCCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHH
Q 018782 1 MVEFGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDIL 80 (350)
Q Consensus 1 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (350)
|.-.|+....--+.+++..+.+..++..|++++..-....|.+......|..+|....++..|-.-++++-.. .|...
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~ 78 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELE 78 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHH
Confidence 4455666666678888888899999999999999887777778899999999999999999999999998875 34544
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH--HHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHH
Q 018782 81 AHNS-LLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIH--AFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIR 157 (350)
Q Consensus 81 ~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (350)
-|.. -...+.+.+.+..|+.+...|.+. ++...-..-+. .....+|+..+..++++....| +..+.+...-
T Consensus 79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gC 152 (459)
T KOG4340|consen 79 QYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGC 152 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchh
Confidence 4443 356677889999999999998753 22222111222 2234678888888888876543 4444455555
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCh------------------
Q 018782 158 KLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDR------------------ 219 (350)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------ 219 (350)
...+.|+++.|.+-|....+-+.--....|+..+.. .+.++.+.|++...++++.|++..+
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 567899999999999998876444456678766654 4568999999999998887653211
Q ss_pred ----------hHHHHHHHHHHHcCCHhHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC
Q 018782 220 ----------HTYNMVLKLLVRVGRFDRATEVWESMEKR-GFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPP 288 (350)
Q Consensus 220 ----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~ 288 (350)
..+|.-...+.+.|+++.|.+-+..|.-+ ....|+.|.+.+.- ....+++.+..+-++-+...+ |-
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al--~n~~~~p~~g~~KLqFLL~~n-Pf 308 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL--MNMDARPTEGFEKLQFLLQQN-PF 308 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH--hcccCCccccHHHHHHHHhcC-CC
Confidence 11233333456789999999988888632 23456666665542 234477888888888887776 56
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782 289 YSSTVEMLRNRLVGLGFLDIIEILADKME 317 (350)
Q Consensus 289 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 317 (350)
...||..++-.|++..-++.|..++.+=.
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 78999999999999999999888776543
No 68
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.38 E-value=8.8e-10 Score=89.61 Aligned_cols=266 Identities=12% Similarity=0.024 Sum_probs=185.7
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 018782 53 GLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAM--CKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDI 130 (350)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (350)
-+.+.|+++.|.+++.-+.+..-......-+.|-..+ ....++..|.++-+...... .-+....+.-.......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 4567788888888887776653332223333332222 22345677777766665432 23333343344445567999
Q ss_pred hHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHH
Q 018782 131 HSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRM 210 (350)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 210 (350)
++|...|++.....-. -......+.-.+-..|++++|++.|-++...- ..+......+...|-...++.+|++++.+.
T Consensus 507 dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 9999999999876422 22333334456677899999999998876542 226677777888899999999999999887
Q ss_pred HhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCH
Q 018782 211 TKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYS 290 (350)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 290 (350)
... ++.|+.....|...|-+.|+-.+|.+.+-+--.. ++-+..+..-+. +|.....-+++++.+|++..- +.|+.
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~-ayyidtqf~ekai~y~ekaal--iqp~~ 659 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLA-AYYIDTQFSEKAINYFEKAAL--IQPNQ 659 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHH-HHHHhhHHHHHHHHHHHHHHh--cCccH
Confidence 764 5567888999999999999999999887654433 333455555444 455555788999999998754 57999
Q ss_pred HHHHHHHHHHH-cCCChhHHHHHHHHhhccCCCcHHH
Q 018782 291 STVEMLRNRLV-GLGFLDIIEILADKMERSTSCTIQE 326 (350)
Q Consensus 291 ~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~ 326 (350)
.-|..++..|. +.|++++|.++++.+.+.-|...+-
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldc 696 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDC 696 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHH
Confidence 99988877665 5899999999999999886665543
No 69
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=2.5e-08 Score=81.69 Aligned_cols=303 Identities=13% Similarity=0.081 Sum_probs=179.1
Q ss_pred HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782 16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI 95 (350)
Q Consensus 16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (350)
.+.+=.+...+..|..+|++.....|.-...|...+.+--..|++..|.++|++..+- .|+..+|++.+..=.+.+.+
T Consensus 113 Yae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykei 190 (677)
T KOG1915|consen 113 YAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEI 190 (677)
T ss_pred HHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHH
Confidence 3344445555555666666555544544555555555555566666666666666553 56777777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC-CC-CccHHHHHHHHHHHHccCCHHHHHHHHH
Q 018782 96 DEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY-NL-VPNVFTYNCIIRKLCKNEKVEEAYQLLD 173 (350)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 173 (350)
+.|..+|++..- +.|+..+|--....-.+.|+...+..+|+...+. |- ..+...+.+....-.++..++.|..+|.
T Consensus 191 eraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyk 268 (677)
T KOG1915|consen 191 ERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYK 268 (677)
T ss_pred HHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777665 3467777777666667777777777777666442 10 0111222222222222333333333333
Q ss_pred HHHHcC-------------------------------------------CCCCHHHHHHHHHHHhcccCHHHHHHHHHHH
Q 018782 174 EMIERG-------------------------------------------ANPDEWSYNAILAYHCDRAEVNMALRLITRM 210 (350)
Q Consensus 174 ~~~~~~-------------------------------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 210 (350)
-.+..- -+.|-.+|--.+..-...|+.+...++++.+
T Consensus 269 yAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErA 348 (677)
T KOG1915|consen 269 YALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERA 348 (677)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 222110 0124445555566656667788888888877
Q ss_pred HhCCCCCChh-------HHHH---HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHH---HHhhccCcHHHHHHH
Q 018782 211 TKENVMPDRH-------TYNM---VLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVH---GLCKKKGKLEEACKY 277 (350)
Q Consensus 211 ~~~~~~~~~~-------~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~---~~~~~~~~~~~a~~~ 277 (350)
+.. ++|-.. .|.- .+-.-....+.+.+.++|+...+. ++-...||..+-- .+...+.++..|.++
T Consensus 349 Ian-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARki 426 (677)
T KOG1915|consen 349 IAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKI 426 (677)
T ss_pred Hcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 765 334221 1111 111123467788888888887763 2223344443322 222244788888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHH
Q 018782 278 FEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQE 326 (350)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 326 (350)
+...+.. -|...++...+..-.+.++++...+++++....+|.+-..
T Consensus 427 LG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~ 473 (677)
T KOG1915|consen 427 LGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA 473 (677)
T ss_pred HHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence 8877654 4888999999999999999999999999998876655443
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.38 E-value=2.8e-09 Score=79.01 Aligned_cols=197 Identities=14% Similarity=0.104 Sum_probs=97.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 018782 47 YSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE 126 (350)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (350)
...|.-.|...|+...|..-+++.++..+. +..+|..+...|.+.|+.+.|.+.|++..+.. +-+....|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 344455555555555555555555554322 44455555555555555555555555555542 2233445555555555
Q ss_pred cCCHhHHHHHHHHHhhCCC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHH
Q 018782 127 ANDIHSVFRVLDSMKRYNL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALR 205 (350)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 205 (350)
.|.+++|...|++...... .--..+|..+.-+..+.|+++.|...|++..+.... ...+...+.......|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 5555555555555543211 112334555555555555555555555555554332 23334444444555555555555
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782 206 LITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEK 247 (350)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 247 (350)
+++.....+. ++..+.-..|+.-...|+-+.+.+.=..+..
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5555444433 4445444455555555555555554444443
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=1.2e-09 Score=92.93 Aligned_cols=242 Identities=19% Similarity=0.183 Sum_probs=176.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCHhh-HHHHHHHHHhcCCHhHHHHHHHHHhhC----
Q 018782 75 CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI-----G-AEPDAFS-YSIFIHAFCEANDIHSVFRVLDSMKRY---- 143 (350)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 143 (350)
.|.-..+...+...|...|+++.|+.+++...+. | ..|...+ .+.+...|...+++++|..+|+++...
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 3334556667999999999999999999998764 2 1233333 344778889999999999999988542
Q ss_pred -C--CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCC-CCH-HHHHHHHHHHhcccCHHHHHHHHHHHHhC
Q 018782 144 -N--LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER-----GAN-PDE-WSYNAILAYHCDRAEVNMALRLITRMTKE 213 (350)
Q Consensus 144 -~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 213 (350)
| .+.-..+++.|..+|.+.|++++|...++...+. +.. |.. ..++.+...+...+++++|..+++...+.
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 2 1223567788888999999999999888876542 111 222 23666777888999999999999876543
Q ss_pred ---CCCCC----hhHHHHHHHHHHHcCCHhHHHHHHHHHHhc----CC--CCC-HHHHHHHHHHHhhccCcHHHHHHHHH
Q 018782 214 ---NVMPD----RHTYNMVLKLLVRVGRFDRATEVWESMEKR----GF--YPS-VSTYSVMVHGLCKKKGKLEEACKYFE 279 (350)
Q Consensus 214 ---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~ 279 (350)
-+.++ ..+++.|...|...|++++|.+++++++.. +- .+. ...++.+-..|... +++++|.++|.
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~-k~~~~a~~l~~ 433 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL-KKYEEAEQLFE 433 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh-cccchHHHHHH
Confidence 12222 357899999999999999999999998743 11 222 34566677776544 88888988887
Q ss_pred HHHh----CC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782 280 MMVD----EG--IPPYSSTVEMLRNRLVGLGFLDIIEILADKME 317 (350)
Q Consensus 280 ~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 317 (350)
+... .| .+....+|..|...|.+.|+++.|.++.+.+.
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7542 23 23345689999999999999999999988775
No 72
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.37 E-value=2.6e-09 Score=79.20 Aligned_cols=206 Identities=13% Similarity=0.028 Sum_probs=175.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782 13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA 92 (350)
Q Consensus 13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (350)
...|.-.|...|+...|..-+++.....|.+..+|..+...|.+.|+.+.|.+.|++..+.... +-.+.|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 4456677899999999999999998888899999999999999999999999999999988544 788899999999999
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 018782 93 GNIDEAHGMLREMRSIGA-EPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQL 171 (350)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 171 (350)
|++++|...|++...... .--..+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.....+.|++-.|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 999999999999987532 2234589999999999999999999999998875 44566788888999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHH
Q 018782 172 LDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYN 223 (350)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (350)
++.....+. ++..+.-..|..-.+.|+.+.+-+.=..+... -|...-|.
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q 244 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQ 244 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHH
Confidence 999988876 78888888888888999999888877776664 35544443
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=7.6e-09 Score=83.21 Aligned_cols=281 Identities=11% Similarity=0.068 Sum_probs=217.0
Q ss_pred CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782 6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSL 85 (350)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (350)
++-+......+...+...|+.++|...|+......|.+..........+.+.|+.+....+...+.... ......|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 455677788899999999999999999999877666677777777777889999999999998887652 2355556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCH
Q 018782 86 LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKV 165 (350)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 165 (350)
+.......+++.|+.+-++.++.. +.+...+-.-...+...++.++|.-.|+..+... +.+...|..|+.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 666677889999999999988753 3345566666677888999999999999988764 45789999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHH-HHHh-cccCHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHHcCCHhHHHHHH
Q 018782 166 EEAYQLLDEMIERGANPDEWSYNAIL-AYHC-DRAEVNMALRLITRMTKENVMPD-RHTYNMVLKLLVRVGRFDRATEVW 242 (350)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~ll-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 242 (350)
.+|..+-+...+.- ..+..+.+.+. ..|. ...--++|.++++..... .|+ ....+.+...|...|..+.+..++
T Consensus 385 kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 99988877766542 22555555442 2222 334457888998887764 344 345677888899999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 018782 243 ESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEML 296 (350)
Q Consensus 243 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 296 (350)
+..... .||....+.+-..+... +.+++|.+.|....+.+ |.+..+...+
T Consensus 462 e~~L~~--~~D~~LH~~Lgd~~~A~-Ne~Q~am~~y~~ALr~d-P~~~~sl~Gl 511 (564)
T KOG1174|consen 462 EKHLII--FPDVNLHNHLGDIMRAQ-NEPQKAMEYYYKALRQD-PKSKRTLRGL 511 (564)
T ss_pred HHHHhh--ccccHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcC-ccchHHHHHH
Confidence 998864 78988888888876655 89999999999998887 5565555444
No 74
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=1.7e-09 Score=88.57 Aligned_cols=222 Identities=15% Similarity=0.156 Sum_probs=137.8
Q ss_pred HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782 21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG 100 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 100 (350)
.-.|+...|.+-|+......+.+...|-.+..+|+...+.++..+.|++..+.+.. ++.+|..-.+...-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence 34566677777777766644444445666777777777777777777777766443 56666666666666677777777
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 018782 101 MLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180 (350)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 180 (350)
=|++.+... +-+...|..+.-+..+.+.+++++..|++..+. +|..+.+|+.....+...++++.|.+.|+...+...
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 777776643 223445555555555666777777777777654 455566777777777777777777777777665422
Q ss_pred CC-----CH--HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782 181 NP-----DE--WSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEK 247 (350)
Q Consensus 181 ~~-----~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 247 (350)
.. +. ..-..++ .+.-.+++..|..++....+..++ ....|..|...-.+.|+.++|.++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 10 11 1111111 112346677777777777665432 345666677777777777777777776554
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.34 E-value=4.7e-08 Score=82.45 Aligned_cols=301 Identities=12% Similarity=0.048 Sum_probs=187.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTV---KTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA 88 (350)
Q Consensus 12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (350)
.|..+...+...|+.+.+.+.+.......+++. .........+...|++++|.+.+++..+.. |.+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 355555666677888888777777655434332 223333456678899999999999988873 335545442 222
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccC
Q 018782 89 MCK----AGNIDEAHGMLREMRSIGAEPD-AFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNE 163 (350)
Q Consensus 89 ~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (350)
+.. .+....+.+.+... .+..|+ ......+...+...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 222 44555555555541 112233 3344566678889999999999999998875 456778888899999999
Q ss_pred CHHHHHHHHHHHHHcCCC-CCH--HHHHHHHHHHhcccCHHHHHHHHHHHHhCCC-CCChhHH-H--HHHHHHHHcCCHh
Q 018782 164 KVEEAYQLLDEMIERGAN-PDE--WSYNAILAYHCDRAEVNMALRLITRMTKENV-MPDRHTY-N--MVLKLLVRVGRFD 236 (350)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~-~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~ 236 (350)
++++|...+++....... |+. ..|..+...+...|++++|..+++....... .+..... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 999999999998876432 222 3455678888999999999999999864332 1111111 1 2233334444433
Q ss_pred HHHHH--H-HHHHhcCC-CCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCC------C--CHHHHHHHHHHHHcCC
Q 018782 237 RATEV--W-ESMEKRGF-YPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIP------P--YSSTVEMLRNRLVGLG 304 (350)
Q Consensus 237 ~a~~~--~-~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~~~~~~g 304 (350)
.+.+. + ........ ............++... |+.+.|...++.+...... . ..........++...|
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA-GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 33332 1 11111100 11111112344444545 8999999999998754312 1 1222333345667899
Q ss_pred ChhHHHHHHHHhhc
Q 018782 305 FLDIIEILADKMER 318 (350)
Q Consensus 305 ~~~~a~~~~~~~~~ 318 (350)
++++|.+.+.....
T Consensus 322 ~~~~A~~~L~~al~ 335 (355)
T cd05804 322 NYATALELLGPVRD 335 (355)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 76
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.31 E-value=6.7e-10 Score=89.10 Aligned_cols=251 Identities=14% Similarity=0.120 Sum_probs=132.7
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 018782 56 DVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFR 135 (350)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 135 (350)
-.|++..++.-.+ ......+.+......+.+++...|+.+.++ ..+.... .|.......+...+...++-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 3456666654444 222211122333444556666666655433 2332222 4444444444444433344444444
Q ss_pred HHHHHhhCCCC-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC
Q 018782 136 VLDSMKRYNLV-PNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN 214 (350)
Q Consensus 136 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 214 (350)
-+++....... .+..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~ 161 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID 161 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44443332222 22222223334556667777777766542 255566666777777777777777777776532
Q ss_pred CCCChhHHHHHHHHHHH----cCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCH
Q 018782 215 VMPDRHTYNMVLKLLVR----VGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYS 290 (350)
Q Consensus 215 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 290 (350)
.| .+...+..++.. .+.+.+|..+|+++.+. ..++..+.+.+..+.... |++++|.+++.+....+ +-++
T Consensus 162 --eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~-~~~~eAe~~L~~al~~~-~~~~ 235 (290)
T PF04733_consen 162 --ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQL-GHYEEAEELLEEALEKD-PNDP 235 (290)
T ss_dssp --CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHC-T-HHHHHHHHHHHCCC--CCHH
T ss_pred --Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhc-cCCH
Confidence 23 344445544432 22577777777776654 445666666666665544 77777777777776655 5566
Q ss_pred HHHHHHHHHHHcCCCh-hHHHHHHHHhhccCCCc
Q 018782 291 STVEMLRNRLVGLGFL-DIIEILADKMERSTSCT 323 (350)
Q Consensus 291 ~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~ 323 (350)
.++..++-+....|+. +.+.+.+.++....|..
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 7777777776667766 55667777777655543
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.28 E-value=3.7e-08 Score=83.06 Aligned_cols=265 Identities=11% Similarity=0.038 Sum_probs=166.2
Q ss_pred HHHHccCChHHHHHHHHHhhhcCCCCHHHHHH---HHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018782 18 HALCKRKHVKVAHQFFDNAKHEFTPTVKTYSI---LVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGN 94 (350)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (350)
..+...|++++|..+++.+....|.+...+.. ........+..+.+.+.++.. ....+........+...+...|+
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCC
Confidence 34567899999999999988777777766653 222222345566666666552 12223334455567788899999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCC-CccH--HHHHHHHHHHHccCCHHHHHHH
Q 018782 95 IDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNL-VPNV--FTYNCIIRKLCKNEKVEEAYQL 171 (350)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~g~~~~a~~~ 171 (350)
+++|...+++..+.. +.+...+..+...+...|++++|..++++...... .++. ..|..+...+...|++++|..+
T Consensus 130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999874 44566788889999999999999999999876431 1232 3455788899999999999999
Q ss_pred HHHHHHcCC-CCCHHHH-H--HHHHHHhcccCHHHHHHH--H-HHHHhCCC-CCChhHHHHHHHHHHHcCCHhHHHHHHH
Q 018782 172 LDEMIERGA-NPDEWSY-N--AILAYHCDRAEVNMALRL--I-TRMTKENV-MPDRHTYNMVLKLLVRVGRFDRATEVWE 243 (350)
Q Consensus 172 ~~~~~~~~~-~~~~~~~-~--~ll~~~~~~~~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 243 (350)
+++...... .+..... + .++.-+...|....+.++ + ........ ............++...|+.+.|..+++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~ 288 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLA 288 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 999864432 1122111 1 222223333433333222 2 11111100 1111222356677788999999999999
Q ss_pred HHHhcCCC-------CCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782 244 SMEKRGFY-------PSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE 284 (350)
Q Consensus 244 ~~~~~~~~-------p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 284 (350)
.+...... ........+........|+.++|.+.+......
T Consensus 289 ~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 289 ALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 98753211 111111122211222449999999999887654
No 78
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.26 E-value=6.6e-10 Score=97.11 Aligned_cols=246 Identities=18% Similarity=0.187 Sum_probs=177.4
Q ss_pred cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 018782 39 EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYS 118 (350)
Q Consensus 39 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 118 (350)
+..|+..+|..+|.-||..|+.+.|- +|.-|.-+..+.+...|+.++.+....++.+.+. .|...||+
T Consensus 20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt 87 (1088)
T KOG4318|consen 20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT 87 (1088)
T ss_pred cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence 78899999999999999999999999 9999998888889999999999999999887766 67888999
Q ss_pred HHHHHHHhcCCHhHH---HHHHHHH----hhCCCCccHHHH--------------HHHHHHHHccCCHHHHHHHHHHHHH
Q 018782 119 IFIHAFCEANDIHSV---FRVLDSM----KRYNLVPNVFTY--------------NCIIRKLCKNEKVEEAYQLLDEMIE 177 (350)
Q Consensus 119 ~l~~~~~~~~~~~~a---~~~~~~~----~~~~~~~~~~~~--------------~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (350)
.|..+|...||+..- .+.+..+ ...|+-.....+ ...+......|.++.+..++..+..
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 999999999997652 2212111 223322111111 1122222333444444444444332
Q ss_pred cCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHH
Q 018782 178 RGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTY 257 (350)
Q Consensus 178 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 257 (350)
.... . .+..+++-+.....+ ..++........-.|++.+|..++++-..+|+.+.|..++.+|.+.|+..+..-|
T Consensus 168 sa~~-~--p~~vfLrqnv~~ntp--vekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 168 SAWN-A--PFQVFLRQNVVDNTP--VEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred cccc-c--hHHHHHHHhccCCch--HHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 2111 1 111134444433322 2333333222222589999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 018782 258 SVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGF 305 (350)
Q Consensus 258 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 305 (350)
+.++-+ . ++..-+..+++-|...|+.|+..|+...+-.+.+.|.
T Consensus 243 wpLl~g---~-~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 243 WPLLLG---I-NAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhhhc---C-ccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 999865 3 8889999999999999999999999999998888665
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.25 E-value=1.5e-07 Score=80.03 Aligned_cols=172 Identities=17% Similarity=0.145 Sum_probs=70.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782 13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA 92 (350)
Q Consensus 13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (350)
|+.+.-.+....++++|++.|..+....+.|...+.-+.-.-++.++++.....-.++.+.. +.....|..++.++.-.
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLL 156 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH
Confidence 33333333334444444444444433333344444444444444444444443333333331 11233344444444444
Q ss_pred CCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHH------HhcCCHhHHHHHHHHHhhCCCCccHHH-HHHHHHHHHccCC
Q 018782 93 GNIDEAHGMLREMRSIG-AEPDAFSYSIFIHAF------CEANDIHSVFRVLDSMKRYNLVPNVFT-YNCIIRKLCKNEK 164 (350)
Q Consensus 93 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~ 164 (350)
|+...|..+++...+.. ..|+...+....... .+.|..+.|.+.+..-... + .|... -..-...+.+.++
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~ 234 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQ 234 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhh
Confidence 55555555555544332 123333333222211 1233333333333322211 0 11111 1122344556677
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHH
Q 018782 165 VEEAYQLLDEMIERGANPDEWSYNA 189 (350)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (350)
+++|..++..++.. .||...|..
T Consensus 235 lEeA~~~y~~Ll~r--nPdn~~Yy~ 257 (700)
T KOG1156|consen 235 LEEAVKVYRRLLER--NPDNLDYYE 257 (700)
T ss_pred HHhHHHHHHHHHhh--CchhHHHHH
Confidence 77777777777766 344444433
No 80
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.25 E-value=1.7e-07 Score=81.34 Aligned_cols=310 Identities=15% Similarity=0.086 Sum_probs=176.2
Q ss_pred CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-CHHHHHH
Q 018782 6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPV-DILAHNS 84 (350)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 84 (350)
+.-|+..|..+.-++...|+++.+.+.|++.....-...+.|+.+...+...|.-..|..+++.-......| +...+-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 345778888888888899999999999998876555566777777777777777777777776654443222 2233222
Q ss_pred HHHHHHh-cCCH--------------------------------------------------HHHHHHHHHHHhCCCCCC
Q 018782 85 LLEAMCK-AGNI--------------------------------------------------DEAHGMLREMRSIGAEPD 113 (350)
Q Consensus 85 l~~~~~~-~~~~--------------------------------------------------~~a~~~~~~~~~~~~~~~ 113 (350)
.-..|.+ .+.. .++++.+++..+.+. -|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-TD 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-CC
Confidence 2222222 2223 344444444444321 22
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-C----------
Q 018782 114 AFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-P---------- 182 (350)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~---------- 182 (350)
+.....+.--|+..++++.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+.....-.. .
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 33333344556677788888888888877654567777777777777777777777776655432100 0
Q ss_pred --------CHHH--------------------------------------------------------------------
Q 018782 183 --------DEWS-------------------------------------------------------------------- 186 (350)
Q Consensus 183 --------~~~~-------------------------------------------------------------------- 186 (350)
-..|
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 0001
Q ss_pred ---------------HHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC
Q 018782 187 ---------------YNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFY 251 (350)
Q Consensus 187 ---------------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 251 (350)
|......+.+.++.++|...+.+..... +.....|......+...|.+.+|.+.|...... .
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--d 714 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--D 714 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--C
Confidence 1111122222233333333333322221 122333444444555556666666666666543 3
Q ss_pred CC-HHHHHHHHHHHhhccCcHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCC
Q 018782 252 PS-VSTYSVMVHGLCKKKGKLEEACK--YFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTS 321 (350)
Q Consensus 252 p~-~~~~~~ll~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 321 (350)
|+ +....++...+... |+..-|.. ++..+.+.+ +.++..|..+...+.+.|+.+.|.+.|....+...
T Consensus 715 P~hv~s~~Ala~~lle~-G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLEL-GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCCcHHHHHHHHHHHHh-CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 33 33444444444443 66666655 777777776 66777777777777777777777777776655433
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.23 E-value=2e-07 Score=73.46 Aligned_cols=307 Identities=11% Similarity=0.051 Sum_probs=221.9
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHH
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAH-NSLLEA 88 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~ 88 (350)
+.-.--+...+...|++..|+.-|.....+.|.+-.++..-...|...|+-.-|+.-+++.++. +||-..- ..-...
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence 3334456677778889999999998888776766666666777888899999999999888876 4553221 122356
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC------------Hh--hHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHH
Q 018782 89 MCKAGNIDEAHGMLREMRSIGAEPD------------AF--SYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNC 154 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~------------~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (350)
+.++|.++.|..=|+.+++.....+ .. .....+..+...||...|+.....+.+-. +-+...|..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 7889999999999999988643211 11 12233455667889999999999998865 558888888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHH----HH---H--
Q 018782 155 IIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTY----NM---V-- 225 (350)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~---l-- 225 (350)
-..+|...|++..|+.=++...+.... +..++-.+-..+...|+.+.++...++-++. .||.... .. +
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K 271 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVK 271 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHH
Confidence 899999999999999988888776544 5556666677778889999999888888774 4554321 11 1
Q ss_pred ----HHHHHHcCCHhHHHHHHHHHHhcCCCCCHHH---HHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 018782 226 ----LKLLVRVGRFDRATEVWESMEKRGFYPSVST---YSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRN 298 (350)
Q Consensus 226 ----~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (350)
+......++|.++.+-.+...+......... +..+-.++ +..|++.+|+....+..+.. +.|..++..-..
T Consensus 272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~-~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAe 349 (504)
T KOG0624|consen 272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY-REDEQFGEAIQQCKEVLDID-PDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc-cccCCHHHHHHHHHHHHhcC-chHHHHHHHHHH
Confidence 1233456778888888888776532212222 33344443 44589999999999998876 566889999999
Q ss_pred HHHcCCChhHHHHHHHHhhccCCCcH
Q 018782 299 RLVGLGFLDIIEILADKMERSTSCTI 324 (350)
Q Consensus 299 ~~~~~g~~~~a~~~~~~~~~~~~~~~ 324 (350)
+|.-...++.|+.-|+...+.+.++.
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESNT 375 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcccH
Confidence 99999999999999998887765554
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.21 E-value=3.5e-07 Score=77.93 Aligned_cols=331 Identities=16% Similarity=0.154 Sum_probs=173.9
Q ss_pred CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782 7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL 86 (350)
Q Consensus 7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 86 (350)
+|-..++..-+.-|...+++...++..+.+..+.|....+.....-.+...|+-++|......-....+. +.++|..+.
T Consensus 4 ~~KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~g 82 (700)
T KOG1156|consen 4 SPKENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLG 82 (700)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHH
Confidence 3333333333333445566666666666666666666666666666666666666666666665554333 556666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH----------------------------------HHHHHHHHhcCCHhH
Q 018782 87 EAMCKAGNIDEAHGMLREMRSIGAEPDAFSY----------------------------------SIFIHAFCEANDIHS 132 (350)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------------------------------~~l~~~~~~~~~~~~ 132 (350)
-.+....++++|++.|......+ +-|...+ ..+..++.-.|+...
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~ 161 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM 161 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666543 2233333 333444444555555
Q ss_pred HHHHHHHHhhCC-CCccHHHHHHHH------HHHHccCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcccCHHHHH
Q 018782 133 VFRVLDSMKRYN-LVPNVFTYNCII------RKLCKNEKVEEAYQLLDEMIERGANPDEWS-YNAILAYHCDRAEVNMAL 204 (350)
Q Consensus 133 a~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~ 204 (350)
|..+.+...+.. -.|+...+.... ....+.|.++.|.+.+..-... +. |... -..-...+.+.+++++|.
T Consensus 162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~-Dkla~~e~ka~l~~kl~~lEeA~ 239 (700)
T KOG1156|consen 162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IV-DKLAFEETKADLLMKLGQLEEAV 239 (700)
T ss_pred HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HH-HHHHHhhhHHHHHHHHhhHHhHH
Confidence 555555554332 124444433222 1223345555555544443322 11 1111 122234556778888888
Q ss_pred HHHHHHHhCCCCCChhHHHHHH-HHHHHcCCHhHHH-HHHH----------------------------------HHHhc
Q 018782 205 RLITRMTKENVMPDRHTYNMVL-KLLVRVGRFDRAT-EVWE----------------------------------SMEKR 248 (350)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~----------------------------------~~~~~ 248 (350)
.++..+...+ ||..-|.... .++.+-.+.-++. .+|. .+.+.
T Consensus 240 ~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 240 KVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred HHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhc
Confidence 8888888754 5544443322 2222111111111 1111 11122
Q ss_pred CC----------------------------------------------CCCHHHHH--HHHHHHhhccCcHHHHHHHHHH
Q 018782 249 GF----------------------------------------------YPSVSTYS--VMVHGLCKKKGKLEEACKYFEM 280 (350)
Q Consensus 249 ~~----------------------------------------------~p~~~~~~--~ll~~~~~~~~~~~~a~~~~~~ 280 (350)
|+ .|....|. .+...+-.. |+++.|..+++.
T Consensus 318 g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~-g~~~~A~~yId~ 396 (700)
T KOG1156|consen 318 GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL-GDYEVALEYIDL 396 (700)
T ss_pred CCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHc-ccHHHHHHHHHH
Confidence 21 12332222 344444444 888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHHH-Hhcccccccccccchhhc
Q 018782 281 MVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELAN-AMRGKTGFRKSRSEETEL 347 (350)
Q Consensus 281 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~ 347 (350)
.+++- |.-...|..=.+.+...|++++|..++++..+.+ .++..+| -..++..+....+++.++
T Consensus 397 AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD--~aDR~INsKcAKYmLrAn~i~eA~~~ 461 (700)
T KOG1156|consen 397 AIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD--TADRAINSKCAKYMLRANEIEEAEEV 461 (700)
T ss_pred HhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHccccHHHHHH
Confidence 87774 4445666666788888888888888888887753 4444444 444444444444444443
No 83
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.18 E-value=1.4e-07 Score=74.63 Aligned_cols=97 Identities=11% Similarity=0.055 Sum_probs=68.3
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 018782 224 MVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGL 303 (350)
Q Consensus 224 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 303 (350)
.+.++.+..|++.+|+++|-.+....++ |..+|.+++..+..+++.++.|++++-++...+ .....+..+.+-|.++
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~--e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS--ERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch--hHHHHHHHHHHHHHHH
Confidence 4667778888999999999888765444 666777766655566688888887765543221 1233455667788889
Q ss_pred CChhHHHHHHHHhhccCCCc
Q 018782 304 GFLDIIEILADKMERSTSCT 323 (350)
Q Consensus 304 g~~~~a~~~~~~~~~~~~~~ 323 (350)
+++=-|-+.|+.+...+|.|
T Consensus 475 ~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHhhhHHHccCCCc
Confidence 98888888888887766554
No 84
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=3.9e-08 Score=82.47 Aligned_cols=85 Identities=16% Similarity=0.095 Sum_probs=44.3
Q ss_pred HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782 21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG 100 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 100 (350)
.+.|++.+|.-.|+...+..|.+...|..|.......++-..|+..+++..+.... +..+...|.-.|...|.-..|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHHH
Confidence 44555555555555555544555555555555555555555555555555554222 44445555555555555555555
Q ss_pred HHHHHH
Q 018782 101 MLREMR 106 (350)
Q Consensus 101 ~~~~~~ 106 (350)
.++.-+
T Consensus 375 ~L~~Wi 380 (579)
T KOG1125|consen 375 MLDKWI 380 (579)
T ss_pred HHHHHH
Confidence 555443
No 85
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.12 E-value=2.3e-06 Score=73.12 Aligned_cols=308 Identities=15% Similarity=0.169 Sum_probs=187.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHhhhcCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018782 13 LDQLLHALCKRKHVKVAHQFFDNAKHEFT--PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMC 90 (350)
Q Consensus 13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (350)
|-..+..+..+|++......|+......| ....+|...+......+-++.+..++++.++. ++..-+-.+..++
T Consensus 105 wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~ 180 (835)
T KOG2047|consen 105 WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLA 180 (835)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHH
Confidence 44455666778888899999988766433 45567888888888888899999999988876 4455667777788
Q ss_pred hcCCHHHHHHHHHHHHhCC------CCCCH--------------------------------------hhHHHHHHHHHh
Q 018782 91 KAGNIDEAHGMLREMRSIG------AEPDA--------------------------------------FSYSIFIHAFCE 126 (350)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~------~~~~~--------------------------------------~~~~~l~~~~~~ 126 (350)
+.+++++|-+.+....... -+.+. ..|+.|...|.+
T Consensus 181 ~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 181 KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 8888888887777664321 01111 245666666667
Q ss_pred cCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC----------------------HHHHHHHHHHHHHcCC----
Q 018782 127 ANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK----------------------VEEAYQLLDEMIERGA---- 180 (350)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------------~~~a~~~~~~~~~~~~---- 180 (350)
.|.+++|.++|++.... ..+...|..+.++|+.-.. ++-.+.-|+.+.....
T Consensus 261 ~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred hhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 77777777777666553 2344455555555543211 1111222222221100
Q ss_pred -------CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC------hhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782 181 -------NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPD------RHTYNMVLKLLVRVGRFDRATEVWESMEK 247 (350)
Q Consensus 181 -------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 247 (350)
..++..|..-+. +..|+..+-...+.++.+. +.|. ...|..+.+.|...|+++.|..+|++..+
T Consensus 339 sVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 001222222221 2234455555666665543 2221 24577888889999999999999999887
Q ss_pred cCCCCC---HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC-----------CC------CHHHHHHHHHHHHcCCChh
Q 018782 248 RGFYPS---VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGI-----------PP------YSSTVEMLRNRLVGLGFLD 307 (350)
Q Consensus 248 ~~~~p~---~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~l~~~~~~~g~~~ 307 (350)
...+-- ..+|......=.++ .+++.|+++.+.....-- ++ +...|..+++.-...|-++
T Consensus 416 V~y~~v~dLa~vw~~waemElrh-~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 416 VPYKTVEDLAEVWCAWAEMELRH-ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred CCccchHHHHHHHHHHHHHHHhh-hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 533211 12233333322334 788888888887643211 11 3345666666666778888
Q ss_pred HHHHHHHHhhccCCCcHHHHHHH
Q 018782 308 IIEILADKMERSTSCTIQELANA 330 (350)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~ 330 (350)
....+++++......+|+.+.|.
T Consensus 495 stk~vYdriidLriaTPqii~Ny 517 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIINY 517 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHH
Confidence 89999999998888888877765
No 86
>PLN02789 farnesyltranstransferase
Probab=99.12 E-value=3.9e-07 Score=74.31 Aligned_cols=213 Identities=9% Similarity=0.049 Sum_probs=137.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782 14 DQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVG-ELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA 92 (350)
Q Consensus 14 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (350)
..+-..+...++.++|+.+.+.+....|.+..+|+....++...| .+++++..++++.+.+.+ +..+|+.-...+.+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 344445566778888888888887766777777777777777666 578888888888877544 566677665555556
Q ss_pred CCH--HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHcc---CCH--
Q 018782 93 GNI--DEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKN---EKV-- 165 (350)
Q Consensus 93 ~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~-- 165 (350)
|.. ++++.+++.+.+.. +-+..+|+...-++...|+++++++.++++++.+ +.+..+|+....++.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccc
Confidence 653 56777777777654 3466677777777777788888888888887765 33556666655554443 222
Q ss_pred --HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 018782 166 --EEAYQLLDEMIERGANPDEWSYNAILAYHCDR----AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVR 231 (350)
Q Consensus 166 --~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (350)
++......+++...+. +...|+-+...+... +...+|.+.+.+....++ .+......|+..|+.
T Consensus 198 ~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 3556666666665443 566666666666552 233456666666555432 345556666666654
No 87
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.10 E-value=6.7e-09 Score=83.40 Aligned_cols=240 Identities=15% Similarity=0.161 Sum_probs=158.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCH
Q 018782 86 LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKV 165 (350)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 165 (350)
++.+.-.|++..++.-.+ ......+.+......+.+++...|+.+.++ ..+.... .|.......+...+...++.
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 344556788888887666 332222223445667788899999877544 4443433 57777776666555544555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHH
Q 018782 166 EEAYQLLDEMIERGANPDEWSYNA-ILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWES 244 (350)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 244 (350)
+.+..-+++.......++..++.. ....+...|+++.|++++... .+.......+.++.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566555555443332322333333 334566789999999887542 4567778889999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHhh---ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCC
Q 018782 245 MEKRGFYPSVSTYSVMVHGLCK---KKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTS 321 (350)
Q Consensus 245 ~~~~~~~p~~~~~~~ll~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 321 (350)
|.+. ..|... ..+..++.. ..+.+.+|..+|+++.+. .++++.+...+..++...|++++|.+++.+....++
T Consensus 157 ~~~~--~eD~~l-~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQI--DEDSIL-TQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCC--SCCHHH-HHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhc--CCcHHH-HHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 9875 445443 333333332 214689999999998766 478999999999999999999999999999999999
Q ss_pred CcHHHHHHHhccccccccc
Q 018782 322 CTIQELANAMRGKTGFRKS 340 (350)
Q Consensus 322 ~~~~~~~~~l~~~~~~~~~ 340 (350)
..++.+.|.+.......+.
T Consensus 233 ~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-T
T ss_pred CCHHHHHHHHHHHHHhCCC
Confidence 9988888876655554444
No 88
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.07 E-value=4.2e-07 Score=83.89 Aligned_cols=229 Identities=13% Similarity=0.090 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHH
Q 018782 78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPD-----AFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTY 152 (350)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 152 (350)
+...|-..|.-....++.++|.++.++++.. +.+. ...|.++++.-...|.-+...++|+++.+.. -.-.+|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 5556666666666777777777777776643 2111 2345666666666666666777777776643 234566
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCC-CChhHHHHHHHHHHH
Q 018782 153 NCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVM-PDRHTYNMVLKLLVR 231 (350)
Q Consensus 153 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 231 (350)
..|...|.+.+.+++|.++++.|.++-. -....|...+..+.+.++-+.|..++.++.+.-++ -........+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 6777777777777777777777776533 35666777777777777777777777776664211 122333444555566
Q ss_pred cCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHcCCChhHH
Q 018782 232 VGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSS--TVEMLRNRLVGLGFLDII 309 (350)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a 309 (350)
.|+.+.++.+|+.....- +--...|+.++..-.++ |+.+.+..+|++++..+++|-.. .|...+..-...|+-+.+
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~-~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKH-GDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHcc-CCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 777777777777766541 12345666667665544 77777777777777776655432 333333333334554444
Q ss_pred HHH
Q 018782 310 EIL 312 (350)
Q Consensus 310 ~~~ 312 (350)
..+
T Consensus 1691 E~V 1693 (1710)
T KOG1070|consen 1691 EYV 1693 (1710)
T ss_pred HHH
Confidence 333
No 89
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.2e-06 Score=71.64 Aligned_cols=94 Identities=15% Similarity=0.080 Sum_probs=60.5
Q ss_pred HHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 018782 227 KLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFL 306 (350)
Q Consensus 227 ~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 306 (350)
..+.+.|++..|.+.|.++++.. +-|...|.....+|.+. |.+..|++-.+..++.+ |+....|..=..++....++
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL-~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKL-GEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777653 23455566555555544 77777777777766665 55556666666666666777
Q ss_pred hHHHHHHHHhhccCCCc
Q 018782 307 DIIEILADKMERSTSCT 323 (350)
Q Consensus 307 ~~a~~~~~~~~~~~~~~ 323 (350)
+.|.+.|.+..+.++..
T Consensus 443 dkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 443 DKALEAYQEALELDPSN 459 (539)
T ss_pred HHHHHHHHHHHhcCchh
Confidence 77777777777665443
No 90
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.05 E-value=6.4e-06 Score=70.56 Aligned_cols=240 Identities=11% Similarity=0.117 Sum_probs=129.6
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHhhh-------cCCCCHHHHHHHHHHHhccCCHH---HHHHHHHHHHhcCCCC
Q 018782 8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKH-------EFTPTVKTYSILVRGLGDVGELS---EARKLFDEMLERKCPV 77 (350)
Q Consensus 8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~ 77 (350)
.++..-+-.+..++..+++++|-+.+..+.. ..+.+...|..+....++.-+.- ....+++.+..+-...
T Consensus 167 ~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq 246 (835)
T KOG2047|consen 167 VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQ 246 (835)
T ss_pred cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHH
Confidence 4455566677778888888888887777632 22344445555555444433221 2333444443331111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-------------------------------
Q 018782 78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE------------------------------- 126 (350)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------------- 126 (350)
--..|++|..-|.+.|.++.|..+|++....- .+..-|+.+...|+.
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 23456667777777777777777766655431 122222222222211
Q ss_pred -----------------------------------cCCHhHHHHHHHHHhhCCCCc------cHHHHHHHHHHHHccCCH
Q 018782 127 -----------------------------------ANDIHSVFRVLDSMKRYNLVP------NVFTYNCIIRKLCKNEKV 165 (350)
Q Consensus 127 -----------------------------------~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~ 165 (350)
.|+..+...+|.+..+. +.| -...|..+.+.|-..|+.
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 12233334444443322 111 123466777788888888
Q ss_pred HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCC----------C-------ChhHHHHH
Q 018782 166 EEAYQLLDEMIERGANPD---EWSYNAILAYHCDRAEVNMALRLITRMTKENVM----------P-------DRHTYNMV 225 (350)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----------~-------~~~~~~~l 225 (350)
+.|..+|++..+-..+-- ..+|......-.++.+++.|+++++......-. | +...|...
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 888888888776543311 234444445555777888888887776432110 0 12345555
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCC
Q 018782 226 LKLLVRVGRFDRATEVWESMEKRGF 250 (350)
Q Consensus 226 ~~~~~~~~~~~~a~~~~~~~~~~~~ 250 (350)
++.....|-++....+|+.+.+..+
T Consensus 484 ~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhc
Confidence 5555566777777777777766543
No 91
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=7.3e-06 Score=69.48 Aligned_cols=97 Identities=13% Similarity=0.002 Sum_probs=63.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc-------------------
Q 018782 13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER------------------- 73 (350)
Q Consensus 13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------------- 73 (350)
.-+=++.+...|++++|.+...++....|.+...+..-+-++++.+++++|+.+.+.-...
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHccc
Confidence 3344566777888999999988888877888888888888888888888888655532210
Q ss_pred ---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 018782 74 ---------KCPV-DILAHNSLLEAMCKAGNIDEAHGMLREMRSIG 109 (350)
Q Consensus 74 ---------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 109 (350)
|..+ +..+...-...+.+.|++++|+.+|+.+.+++
T Consensus 95 ~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 95 LDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 1111 11233333455666777777777777776553
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=2.3e-07 Score=71.78 Aligned_cols=280 Identities=11% Similarity=0.036 Sum_probs=193.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH-HHHHH
Q 018782 46 TYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI-FIHAF 124 (350)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 124 (350)
-++..+..+.+..++++|++++..-.++..+ +......|..+|....++..|-..|+++... .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 3666777778889999999999988887433 7788889999999999999999999999875 455544432 34566
Q ss_pred HhcCCHhHHHHHHHHHhhCCCCccHHHHHHHH--HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHH
Q 018782 125 CEANDIHSVFRVLDSMKRYNLVPNVFTYNCII--RKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNM 202 (350)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 202 (350)
.+.+.+..|+++...|... ++...-..-+ ......+++..+..++++....| +..+.+.......+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 6788999999999988763 2222211112 22345788888988888876433 44455555555678999999
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC-------------CCHH--------HHHHHH
Q 018782 203 ALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFY-------------PSVS--------TYSVMV 261 (350)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------p~~~--------~~~~ll 261 (350)
|.+-|+...+-+--.....|+..+ +..+.|+++.|.+...+++++|++ ||+. .-+.++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999988764323345676544 566789999999999999988754 2221 122333
Q ss_pred HHH------hhccCcHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHHHHhccc
Q 018782 262 HGL------CKKKGKLEEACKYFEMMVDE-GIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAMRGK 334 (350)
Q Consensus 262 ~~~------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (350)
.++ ..+.|+++.|.+.+..|--. .-..|+.|+..+.-.-. .+++-...+-+.-+...+|.|+..+.|.++..
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFANlLlly 320 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFANLLLLY 320 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 332 11348888888888877422 22446777766544333 34455555556666677889998888888765
Q ss_pred cc
Q 018782 335 TG 336 (350)
Q Consensus 335 ~~ 336 (350)
+.
T Consensus 321 CK 322 (459)
T KOG4340|consen 321 CK 322 (459)
T ss_pred hh
Confidence 54
No 93
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.02 E-value=5.2e-06 Score=69.64 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 018782 220 HTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP-SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRN 298 (350)
Q Consensus 220 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (350)
-+|..+++.-.+...+..|+.+|.++.+.+..+ ++..+++++.-+|. ++..-|.++|+--... ...++......+.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs--kD~~~AfrIFeLGLkk-f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS--KDKETAFRIFELGLKK-FGDSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc--CChhHHHHHHHHHHHh-cCCChHHHHHHHH
Confidence 567788888889999999999999999887777 78888999998874 7999999999976554 2456666677788
Q ss_pred HHHcCCChhHHHHHHHHhhcc
Q 018782 299 RLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 299 ~~~~~g~~~~a~~~~~~~~~~ 319 (350)
-+...|+-..+..+|++...+
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhc
Confidence 888889999999999998877
No 94
>PLN02789 farnesyltranstransferase
Probab=99.01 E-value=1.8e-06 Score=70.43 Aligned_cols=136 Identities=6% Similarity=-0.004 Sum_probs=63.1
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 018782 52 RGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG-NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDI 130 (350)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (350)
..+...++.++|+.+++++++.+.. +..+|+.-..++...| ++++++..++++.+... -+..+|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCch
Confidence 3344455555666666655554322 3444444444444444 34555555555554421 2333444333333333331
Q ss_pred --hHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018782 131 --HSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAIL 191 (350)
Q Consensus 131 --~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 191 (350)
+++..+++++.+.. +-+..+|+...-++...|+++++++.++++++.++. +...|+...
T Consensus 123 ~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~ 183 (320)
T PLN02789 123 AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRY 183 (320)
T ss_pred hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHH
Confidence 34445554444433 234455555555555555555555555555554433 334444333
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.01 E-value=1.6e-07 Score=74.24 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=47.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHhcccCHHHHHHHHHHHHhC
Q 018782 154 CIIRKLCKNEKVEEAYQLLDEMIERGAN-P-DEWSYNAILAYHCDRAEVNMALRLITRMTKE 213 (350)
Q Consensus 154 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 213 (350)
.+...+.+.|++++|...++...+.... | ....+..+..++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556788899999999999998876332 2 3567888889999999999999988887764
No 96
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.00 E-value=6e-08 Score=83.56 Aligned_cols=223 Identities=13% Similarity=0.099 Sum_probs=175.4
Q ss_pred CCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 018782 5 GIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNS 84 (350)
Q Consensus 5 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 84 (350)
+++|-...-..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+..++ +|++..|..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 345555555667788888999999999999874 5677889999999999999999888874 678888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC
Q 018782 85 LLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK 164 (350)
Q Consensus 85 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (350)
+........-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.. +....+|-.+.-+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh
Confidence 888877777778888887775432 12222233344788999999998876654 4567788888888889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHH
Q 018782 165 VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWES 244 (350)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 244 (350)
++.|...|.......+. +...|+.+-.+|.+.++..+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.+
T Consensus 535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 99999999888876433 56789999999999999999999999999887 34566777888888999999999999988
Q ss_pred HHh
Q 018782 245 MEK 247 (350)
Q Consensus 245 ~~~ 247 (350)
+.+
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 874
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.00 E-value=1.2e-06 Score=81.07 Aligned_cols=217 Identities=8% Similarity=0.049 Sum_probs=124.7
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018782 32 FFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPV-----DILAHNSLLEAMCKAGNIDEAHGMLREMR 106 (350)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 106 (350)
=|+++....|.+...|-..|......++.+.|.+++++.+.. +.+ -...|.++++.-..-|.-+...++|+++.
T Consensus 1446 DferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 344444445555666666666666666666666666666543 211 13345555555555566666666666666
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHH
Q 018782 107 SIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-PDEW 185 (350)
Q Consensus 107 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~ 185 (350)
+.. -.-..|..|...|.+.+..++|.++++.|.+.- .-....|...+..+.+..+-+.|..++.+..+.-++ -...
T Consensus 1525 qyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1525 QYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred Hhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 542 112345566666666666666666666665542 235556666666666666666666666666554211 1223
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC
Q 018782 186 SYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPS 253 (350)
Q Consensus 186 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 253 (350)
...-.+..-.+.|+.+++..+|+..+...+ --...|+..++.-.++|+.+.++.+|++....++.|-
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 333444444566666666666666665533 2345666666666666666666666666666655443
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=3.4e-07 Score=77.06 Aligned_cols=254 Identities=15% Similarity=0.101 Sum_probs=172.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 018782 51 VRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDI 130 (350)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (350)
..-+.+.|++.+|.-.|+...+..+. +...|..|.......++-..|+..+++..+.. +-+....-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 34556788888998889888887544 78888888888888888889999999888863 33556777778888888888
Q ss_pred hHHHHHHHHHhhCCCCccHHHHHH-------HHHHHHccCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhcccCHHH
Q 018782 131 HSVFRVLDSMKRYNLVPNVFTYNC-------IIRKLCKNEKVEEAYQLLDEMI-ERGANPDEWSYNAILAYHCDRAEVNM 202 (350)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~ 202 (350)
..|+..++.-+....+ -.+.-.. .-..+.....+....++|-++. ..+..+|+.....|.-.|--.|++++
T Consensus 370 ~~Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 8888888876554311 0000000 0011222223444555555544 34444677788888888888899999
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHhhccCcHHHHHHHHHH
Q 018782 203 ALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVS--TYSVMVHGLCKKKGKLEEACKYFEM 280 (350)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~~a~~~~~~ 280 (350)
|.+.|+.++...+ -|..+||.|...++...+..+|...|++..+. .|+.+ -||.-|. |. ..|.+++|.+.|-.
T Consensus 449 aiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS-~m-NlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 449 AVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGIS-CM-NLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhh-hh-hhhhHHHHHHHHHH
Confidence 9999999888643 46678899998888888899999999998875 56543 3554443 33 44899999888876
Q ss_pred HHhC---C------CCCCHHHHHHHHHHHHcCCChhHHHHH
Q 018782 281 MVDE---G------IPPYSSTVEMLRNRLVGLGFLDIIEIL 312 (350)
Q Consensus 281 ~~~~---~------~~~~~~~~~~l~~~~~~~g~~~~a~~~ 312 (350)
++.. + ..++..+|..|-.++.-.++.|.+.+.
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 5432 1 112345777777777777777654443
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=6.8e-06 Score=78.36 Aligned_cols=303 Identities=13% Similarity=0.091 Sum_probs=188.1
Q ss_pred HHHHHHHccCChHHHHHHHHHhhhcCC-------C--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCH----HH
Q 018782 15 QLLHALCKRKHVKVAHQFFDNAKHEFT-------P--TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDI----LA 81 (350)
Q Consensus 15 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~ 81 (350)
.....+...|+++++..++........ + .......+...+...|++++|...+++....-...+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 334455678899999888887643211 1 1122233445566789999999999987763111121 24
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC--CHhhHHHHHHHHHhcCCHhHHHHHHHHHhh----CCCC--c-cH
Q 018782 82 HNSLLEAMCKAGNIDEAHGMLREMRSIGA---EP--DAFSYSIFIHAFCEANDIHSVFRVLDSMKR----YNLV--P-NV 149 (350)
Q Consensus 82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~--~-~~ 149 (350)
.+.+...+...|++++|...+.+.....- .+ ...+...+...+...|+++.|...+++... .+.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 45566677889999999999888764211 11 123445566778889999999998887644 2211 1 22
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCC-ChhHH--
Q 018782 150 FTYNCIIRKLCKNEKVEEAYQLLDEMIERG--ANP--DEWSYNAILAYHCDRAEVNMALRLITRMTKENVMP-DRHTY-- 222 (350)
Q Consensus 150 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-- 222 (350)
..+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+++.|.+.+.......... ....+
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 334455666777899999999888875431 111 12334445566778899999998888875421110 11111
Q ss_pred ---HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH---HHHHHHHHHHhhccCcHHHHHHHHHHHHhC----CCCC-CHH
Q 018782 223 ---NMVLKLLVRVGRFDRATEVWESMEKRGFYPSV---STYSVMVHGLCKKKGKLEEACKYFEMMVDE----GIPP-YSS 291 (350)
Q Consensus 223 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 291 (350)
...+..+...|+.+.|...+............ ..+..+..++... |++++|...+++.... |... ...
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~-g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL-GQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11224445678899999887776542111111 1123344444444 8999999999987653 3222 234
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782 292 TVEMLRNRLVGLGFLDIIEILADKMER 318 (350)
Q Consensus 292 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 318 (350)
+...+..++.+.|+.++|...+.+...
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566778889999999999999888764
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.93 E-value=5.2e-07 Score=71.26 Aligned_cols=187 Identities=12% Similarity=0.104 Sum_probs=123.0
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccH---HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HH
Q 018782 112 PDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNV---FTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDE--WS 186 (350)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~ 186 (350)
.....+..+...+...|+++.|...|+++.... +.+. .++..+..++...|++++|...++++.+..+.... .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345567778888888999999999999887653 2222 46677788888899999999999998876443222 13
Q ss_pred HHHHHHHHhcc--------cCHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHH
Q 018782 187 YNAILAYHCDR--------AEVNMALRLITRMTKENVMPDR-HTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTY 257 (350)
Q Consensus 187 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 257 (350)
+..+..++... |+++.|.+.++.+.... |+. ..+..+..... ... .... ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~~~--------~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RLAG--------KE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HHHH--------HH
Confidence 44444444443 67788888888887753 332 22222211111 000 0000 01
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccC
Q 018782 258 SVMVHGLCKKKGKLEEACKYFEMMVDEG--IPPYSSTVEMLRNRLVGLGFLDIIEILADKMERST 320 (350)
Q Consensus 258 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 320 (350)
..+...+... |++++|...++.+.... -+.....+..++.++...|++++|..+++.+....
T Consensus 170 ~~~a~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 170 LYVARFYLKR-GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHc-CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1233345555 99999999999998763 12346788899999999999999999999887654
No 101
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.93 E-value=3.6e-07 Score=69.49 Aligned_cols=168 Identities=14% Similarity=0.050 Sum_probs=135.7
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 018782 40 FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI 119 (350)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 119 (350)
.|.+..+ ..+-..+...|+-+....+....... .+-+....+..+....+.|++..|+..+++..... ++|..+|+.
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~ 139 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNL 139 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhH
Confidence 3445556 77777888888888888888876654 23367777778899999999999999999998763 678889999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC
Q 018782 120 FIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAE 199 (350)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 199 (350)
+.-+|.+.|+.+.|..-|.+..+.. +.+....+.+.-.+.-.|+++.|..++......+.. |...-..+.......|+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCC
Confidence 9999999999999999999988764 346778888888888999999999999988877544 77777778888889999
Q ss_pred HHHHHHHHHHHHh
Q 018782 200 VNMALRLITRMTK 212 (350)
Q Consensus 200 ~~~a~~~~~~~~~ 212 (350)
++.|.++...-..
T Consensus 218 ~~~A~~i~~~e~~ 230 (257)
T COG5010 218 FREAEDIAVQELL 230 (257)
T ss_pred hHHHHhhcccccc
Confidence 9999988765443
No 102
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.92 E-value=1.1e-06 Score=80.07 Aligned_cols=222 Identities=11% Similarity=0.129 Sum_probs=127.9
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 018782 41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120 (350)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 120 (350)
+.+...+..|+..+...+++++|.++.+...+..+ -....|..+...+.+.++...+.-+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 45667788888888888888888888886666522 2444444444456666664444433 22
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCH
Q 018782 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEV 200 (350)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 200 (350)
+.......++..+..+...+...+ -+..++..+..+|-+.|+.++|..+|+++.+..+. +..+.+.+...|... +.
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hH
Confidence 233333334433344444444432 34446666666666777777777777776666533 566666666666666 66
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc-------------------CCCCCHHHHHHHH
Q 018782 201 NMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR-------------------GFYPSVSTYSVMV 261 (350)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------------------~~~p~~~~~~~ll 261 (350)
++|.+++.+.+.. +...+++..+.++|.++... |..--..++-.+.
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 6666666665543 22223333333333333322 1111223333444
Q ss_pred HHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 018782 262 HGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLV 301 (350)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (350)
..| ...++++++..+++.+.+.. +.|......++.+|.
T Consensus 231 ~~y-~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 231 EPY-KALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHH-hhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 443 44478889999999888886 567777777777776
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.91 E-value=1.9e-06 Score=78.51 Aligned_cols=147 Identities=12% Similarity=0.140 Sum_probs=83.7
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA 88 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (350)
+...+..|+..+...+++++|.++.+......|.....|..+...+.+.++.+++.-+ .+...
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~--------------- 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS--------------- 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh---------------
Confidence 4556788999999999999999999987776677777777777777788876666555 33322
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHH
Q 018782 89 MCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEA 168 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 168 (350)
.....++..+..+...+...+ -+...+..+..+|-+.|+.+++..+|+++.+.. +-++.+.|.+...|... ++++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 222233333333333333321 222344444555555555555555555554443 33444445555444444 55555
Q ss_pred HHHHHHHH
Q 018782 169 YQLLDEMI 176 (350)
Q Consensus 169 ~~~~~~~~ 176 (350)
..++.+..
T Consensus 169 ~~m~~KAV 176 (906)
T PRK14720 169 ITYLKKAI 176 (906)
T ss_pred HHHHHHHH
Confidence 55544443
No 104
>PF12854 PPR_1: PPR repeat
Probab=98.90 E-value=2.6e-09 Score=55.09 Aligned_cols=33 Identities=27% Similarity=0.576 Sum_probs=25.9
Q ss_pred CCCCcCHhhHHHHHHHHHccCChHHHHHHHHHh
Q 018782 4 FGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNA 36 (350)
Q Consensus 4 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 36 (350)
+|++||..+|+.+|.++++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 477788888888888888888888888887776
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.89 E-value=1.7e-05 Score=62.98 Aligned_cols=272 Identities=13% Similarity=0.081 Sum_probs=196.2
Q ss_pred CcCHhhHHHHH---HHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-----
Q 018782 7 KPSIYDLDQLL---HALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD----- 78 (350)
Q Consensus 7 ~p~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----- 78 (350)
..|+..|.++. ..|...|+-..|+.-+++....-|.-......-...+.+.|.++.|..-|+..++......
T Consensus 66 e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ea 145 (504)
T KOG0624|consen 66 EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEA 145 (504)
T ss_pred cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHH
Confidence 34555555544 4567778888888888777653233334444556678899999999999999988743211
Q ss_pred -------HHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccH
Q 018782 79 -------ILA--HNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNV 149 (350)
Q Consensus 79 -------~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 149 (350)
... ....+..+...|+...|++....+++.. +-|...+..-..+|...|++..|+.-++...+.. .-++
T Consensus 146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnT 223 (504)
T KOG0624|consen 146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNT 223 (504)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccch
Confidence 111 2233455667899999999999999863 5688888889999999999999999888887754 3466
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH----HHHH---------HHHHhcccCHHHHHHHHHHHHhCCCC
Q 018782 150 FTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWS----YNAI---------LAYHCDRAEVNMALRLITRMTKENVM 216 (350)
Q Consensus 150 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~ 216 (350)
.++.-+-..+...|+.+.++...++.++.+ ||... |..+ +......++|-++++..+...+..+.
T Consensus 224 e~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 224 EGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence 677777788889999999999999988764 44322 2111 12234567788888888887776433
Q ss_pred CChh---HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782 217 PDRH---TYNMVLKLLVRVGRFDRATEVWESMEKRGFYPS-VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG 285 (350)
Q Consensus 217 ~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 285 (350)
.... .+..+-.++...+++.+|++...+..+. .|+ +.++.--..+|... ..++.|+.-|+...+.+
T Consensus 302 ~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~d-E~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 302 ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGD-EMYDDAIHDYEKALELN 371 (504)
T ss_pred ccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHhcC
Confidence 2222 3455667777889999999999999875 455 77777777888766 89999999999998876
No 106
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=2.4e-06 Score=74.05 Aligned_cols=220 Identities=11% Similarity=0.030 Sum_probs=173.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHH
Q 018782 75 CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNC 154 (350)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (350)
.+|-...-..+...+.+.|-...|..+++++. .|..++.+|...|+..+|..+..+..+. +|+...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 44444555667778888899999999988874 3666888999999999999999888773 688999988
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 018782 155 IIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGR 234 (350)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 234 (350)
+.+......-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+.+. ....+|..+..+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhh
Confidence 888888877788888888775443 111222223457889999999988777542 456788888888889999
Q ss_pred HhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 018782 235 FDRATEVWESMEKRGFYPS-VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILA 313 (350)
Q Consensus 235 ~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 313 (350)
++.|.+.|...... .|| ...|+.+-.+|.+. ++-.+|...+++..+.+ .-+..+|...+....+.|.+++|.+.+
T Consensus 535 ~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~-~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRL-KKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHH-hhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 99999999998875 444 56788888888877 89999999999999888 667788888888899999999999999
Q ss_pred HHhh
Q 018782 314 DKME 317 (350)
Q Consensus 314 ~~~~ 317 (350)
.++.
T Consensus 611 ~rll 614 (777)
T KOG1128|consen 611 HRLL 614 (777)
T ss_pred HHHH
Confidence 8875
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.86 E-value=1.2e-06 Score=66.64 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH-HHcCC--HhHH
Q 018782 162 NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLL-VRVGR--FDRA 238 (350)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~a 238 (350)
.++.+++...++...+.++. +...|..+...|...|+++.|...+++...... .+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 33444444444444444322 444455555555555555555555555444332 2334444444432 33343 2455
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782 239 TEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG 285 (350)
Q Consensus 239 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 285 (350)
.+++++..+.+.. +...+..+...+... |++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~-g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQ-ADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC
Confidence 5555555443211 222233333333222 55555555555554443
No 108
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.84 E-value=2.3e-06 Score=65.21 Aligned_cols=165 Identities=15% Similarity=0.081 Sum_probs=138.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHH
Q 018782 78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIR 157 (350)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (350)
|... ..+-..+...|+-+....+....... .+.|.......+....+.|++..|...+++..... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 4455 66777788889888888888876543 34455667778999999999999999999998765 789999999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhH
Q 018782 158 KLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDR 237 (350)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 237 (350)
+|.+.|++++|..-|.+..+..+. +...++.+.-.+.-.|+.+.|..++......+. -|..+-..+.......|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHH
Confidence 999999999999999999987554 667788888888999999999999999888653 366777888889999999999
Q ss_pred HHHHHHHHHh
Q 018782 238 ATEVWESMEK 247 (350)
Q Consensus 238 a~~~~~~~~~ 247 (350)
|.++...-..
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9998876554
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.83 E-value=2.6e-07 Score=66.46 Aligned_cols=96 Identities=8% Similarity=-0.100 Sum_probs=66.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 018782 47 YSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE 126 (350)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (350)
+..+...+...|++++|...|+......+ .+...|..+..++...|++++|...|++..... +.+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 44556666777777777777777776633 366777777777777777777777777777653 3456666777777777
Q ss_pred cCCHhHHHHHHHHHhhCC
Q 018782 127 ANDIHSVFRVLDSMKRYN 144 (350)
Q Consensus 127 ~~~~~~a~~~~~~~~~~~ 144 (350)
.|+.++|...|+...+..
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 777777777777776643
No 110
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.82 E-value=1.8e-06 Score=77.70 Aligned_cols=148 Identities=11% Similarity=0.063 Sum_probs=116.9
Q ss_pred hcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 018782 38 HEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSY 117 (350)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 117 (350)
..++.++..+..|.....+.|++++|+.+++...+..+ -+......+...+.+.+++++|+..+++..... +-+....
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~ 157 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREI 157 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHH
Confidence 35677788888999999999999999999999888733 367777888888999999999999999998864 3355567
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 018782 118 SIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNA 189 (350)
Q Consensus 118 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 189 (350)
..+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+...+.. .+....|+.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 777888889999999999999988744 4457888888888899999999999998887652 233444443
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=6e-07 Score=68.21 Aligned_cols=160 Identities=8% Similarity=0.058 Sum_probs=122.0
Q ss_pred HHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018782 18 HALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDE 97 (350)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 97 (350)
-.|...|+++......+.+... .. .+...++.+++...+++..+.+. .+...|..+...|...|++++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~--~~---------~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADP--LH---------QFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCc--cc---------cccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHH
Confidence 4577899998876665433221 11 22236778888888888887754 489999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHH-HHhcCC--HhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 018782 98 AHGMLREMRSIGAEPDAFSYSIFIHA-FCEAND--IHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDE 174 (350)
Q Consensus 98 a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 174 (350)
|...|++..+.. +.+...+..+..+ +...|+ .++|..++++..+.+ +.+..++..+...+.+.|++++|...|++
T Consensus 92 A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999874 3466777777776 467677 599999999998876 45788899999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHH
Q 018782 175 MIERGANPDEWSYNAILAY 193 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~ll~~ 193 (350)
+.+... |+..-+. +|..
T Consensus 170 aL~l~~-~~~~r~~-~i~~ 186 (198)
T PRK10370 170 VLDLNS-PRVNRTQ-LVES 186 (198)
T ss_pred HHhhCC-CCccHHH-HHHH
Confidence 988753 3444443 3343
No 112
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.81 E-value=7.3e-05 Score=65.64 Aligned_cols=285 Identities=16% Similarity=0.170 Sum_probs=184.0
Q ss_pred cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhH
Q 018782 39 EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEP-DAFSY 117 (350)
Q Consensus 39 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ 117 (350)
.+..++..|..+.-++...|+++.+.+.|++....-+. ....|+.+...+...|.-..|..+++........| +...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 45678899999999999999999999999998765333 67889999999999999999999999887643223 23223
Q ss_pred HHHHHHHH-hcCCHhHH--------------------------------------------------HHHHHHHhhCCCC
Q 018782 118 SIFIHAFC-EANDIHSV--------------------------------------------------FRVLDSMKRYNLV 146 (350)
Q Consensus 118 ~~l~~~~~-~~~~~~~a--------------------------------------------------~~~~~~~~~~~~~ 146 (350)
-..-..|. +.+..+++ .+.+++..+.+ +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~ 475 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-P 475 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-C
Confidence 22222222 22333333 33333333322 1
Q ss_pred ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCC----------
Q 018782 147 PNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVM---------- 216 (350)
Q Consensus 147 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------- 216 (350)
.|..+..-+.--|+..++.+.|.+..++..+.+...+...|..+.-.+...+++..|+.+.+.....-..
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 1222222233345667788999999999988866768888888777777777777777666554221000
Q ss_pred --------------------------------------------------------------------------------
Q 018782 217 -------------------------------------------------------------------------------- 216 (350)
Q Consensus 217 -------------------------------------------------------------------------------- 216 (350)
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~ 635 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS 635 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence
Q ss_pred ------CC------hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782 217 ------PD------RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE 284 (350)
Q Consensus 217 ------~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 284 (350)
|+ ...|......+.+.++.++|...+.+..+.. .-....|...-..+..+ |..++|.+.|......
T Consensus 636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~-~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVK-GQLEEAKEAFLVALAL 713 (799)
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHH-HhhHHHHHHHHHHHhc
Confidence 00 0112233344455555666665555555431 11222233332333334 8888888888888877
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHH--HHHHhhccCCCcHHHHH
Q 018782 285 GIPPYSSTVEMLRNRLVGLGFLDIIEI--LADKMERSTSCTIQELA 328 (350)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~ 328 (350)
+ |.++....++..++.+.|+..-|.. ++..+.+.++..+..++
T Consensus 714 d-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~ 758 (799)
T KOG4162|consen 714 D-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWY 758 (799)
T ss_pred C-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH
Confidence 6 6677788888999999998888887 88888888888776654
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.81 E-value=1.2e-06 Score=62.96 Aligned_cols=109 Identities=7% Similarity=-0.095 Sum_probs=76.9
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782 65 KLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN 144 (350)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 144 (350)
.++++..+. ++..+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+......
T Consensus 14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 455555554 33345556677777888888888888877753 3466677777777788888888888888777654
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 018782 145 LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG 179 (350)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 179 (350)
+.+...+..+..++...|++++|...|+...+..
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4566777777777777888888888887777663
No 114
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=2.2e-05 Score=60.12 Aligned_cols=118 Identities=13% Similarity=0.184 Sum_probs=60.4
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----c
Q 018782 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHC----D 196 (350)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~ 196 (350)
...|+..+++++|++..+... +......=+..+.+..+++-|...+++|.+.. +..|.+-|..++. .
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 344555666666665555411 22222222344445555566666666665431 3344444444433 2
Q ss_pred ccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782 197 RAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR 248 (350)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 248 (350)
.+....|.-+|+++.++ ..|+..+.+-...++...|++++|..++++....
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 33455566666665543 3455555555555666666666666666665544
No 115
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.79 E-value=7.9e-05 Score=71.22 Aligned_cols=298 Identities=11% Similarity=0.069 Sum_probs=181.7
Q ss_pred HHccCChHHHHHHHHHhhhc-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC------CCC--HHHHHHHHHHHH
Q 018782 20 LCKRKHVKVAHQFFDNAKHE-FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKC------PVD--ILAHNSLLEAMC 90 (350)
Q Consensus 20 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~ 90 (350)
....|++..+..+++.+... ...++.........+...|+++++..++......-. .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 34456666666666555321 112222334445555678899999999987754311 111 122223345566
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHhHHHHHHHHHhhC----CC-CccHHHHHHHHHHHHc
Q 018782 91 KAGNIDEAHGMLREMRSIGAEPDA----FSYSIFIHAFCEANDIHSVFRVLDSMKRY----NL-VPNVFTYNCIIRKLCK 161 (350)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~ 161 (350)
..|++++|...+++..+.-...+. ...+.+...+...|+++.|...+++.... |. .....+...+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 899999999999998763111221 23455666777899999999999887542 21 1112345556677888
Q ss_pred cCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC--CCC--ChhHHHHHHHHHH
Q 018782 162 NEKVEEAYQLLDEMIER----GAN--P-DEWSYNAILAYHCDRAEVNMALRLITRMTKEN--VMP--DRHTYNMVLKLLV 230 (350)
Q Consensus 162 ~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~ 230 (350)
.|++++|...+++.... +.. + ....+..+...+...|++++|...+....... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998886643 211 1 12234445556677899999999988865431 112 2334455667788
Q ss_pred HcCCHhHHHHHHHHHHhcC--CCCCHH--HH--HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHH
Q 018782 231 RVGRFDRATEVWESMEKRG--FYPSVS--TY--SVMVHGLCKKKGKLEEACKYFEMMVDEGIPPY---SSTVEMLRNRLV 301 (350)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~--~~p~~~--~~--~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 301 (350)
..|++++|.+.+....... ...... .. ...+..+.. .|+.+.|..++........... ...+..+..++.
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM-TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH-CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8999999999998875421 111110 10 011122233 4899999999877654321111 112456778889
Q ss_pred cCCChhHHHHHHHHhhc
Q 018782 302 GLGFLDIIEILADKMER 318 (350)
Q Consensus 302 ~~g~~~~a~~~~~~~~~ 318 (350)
..|++++|...+++...
T Consensus 703 ~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 703 LLGQFDEAEIILEELNE 719 (903)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998764
No 116
>PF12854 PPR_1: PPR repeat
Probab=98.79 E-value=1.1e-08 Score=52.82 Aligned_cols=31 Identities=35% Similarity=0.605 Sum_probs=14.6
Q ss_pred CCCChhHHHHHHHHHHHcCCHhHHHHHHHHH
Q 018782 215 VMPDRHTYNMVLKLLVRVGRFDRATEVWESM 245 (350)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 245 (350)
+.||..+|+.||++|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4444444444444444444444444444443
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=1e-05 Score=61.92 Aligned_cols=254 Identities=12% Similarity=0.073 Sum_probs=155.7
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 018782 52 RGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIH 131 (350)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 131 (350)
+-+.-.|++..++..-....... -+...-..+.++|...|.+.....- .... -.|....+..+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchhH
Confidence 34444577777776665544332 2444444556677777765543322 2221 1233334444444333344444
Q ss_pred HHH-HHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHH
Q 018782 132 SVF-RVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRM 210 (350)
Q Consensus 132 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 210 (350)
... .+.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+.+-|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 344444444333343444444567888889999888877622 2333333345556777888888888888
Q ss_pred HhCCCCCChhHHHHHHHHHHH----cCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC
Q 018782 211 TKENVMPDRHTYNMVLKLLVR----VGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGI 286 (350)
Q Consensus 211 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~ 286 (350)
.+- -+..|.+.|..++.+ .+.+..|.-+|++|.+. ..|+..+.+....+.... |++++|..+++......
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~-~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQL-GRYEEAESLLEEALDKD- 237 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHh-cCHHHHHHHHHHHHhcc-
Confidence 773 355677777777664 34688888899998864 567888887777665444 89999999999888876
Q ss_pred CCCHHHHHHHHHHHHcCCCh-hHHHHHHHHhhccCCCc
Q 018782 287 PPYSSTVEMLRNRLVGLGFL-DIIEILADKMERSTSCT 323 (350)
Q Consensus 287 ~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~ 323 (350)
..++.++..++-+-...|.. +...+.+.++....+..
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 56777777776666666655 44556777777665544
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.75 E-value=1.4e-06 Score=78.28 Aligned_cols=147 Identities=7% Similarity=0.029 Sum_probs=128.0
Q ss_pred CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782 6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSL 85 (350)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (350)
.+.++..+..|..+..+.|.+++|..+++.+..-.|.+......++.++.+.+++++|+..+++.....+. +....+.+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 45668888899999999999999999999999988999999999999999999999999999999998554 78888999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHH
Q 018782 86 LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCI 155 (350)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (350)
..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|++..+.. .+....|+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 999999999999999999999843 3457789999999999999999999999987653 2344454443
No 119
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=1.3e-05 Score=60.90 Aligned_cols=190 Identities=12% Similarity=0.080 Sum_probs=139.1
Q ss_pred ccCChHHHHHHHHHhhh----c-CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782 22 KRKHVKVAHQFFDNAKH----E-FTPTV-KTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI 95 (350)
Q Consensus 22 ~~g~~~~a~~~~~~~~~----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (350)
...+.++.++++..+.. + ..++. ..|..++-+....|+.+.|...++++..+- |-+..+-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 45577888888888643 3 44454 446677778888999999999999988873 33444333333345568999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782 96 DEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEM 175 (350)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 175 (350)
++|+++|+.+.+.. +.|..++---+...-..|..-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999875 456667766666666777777888888877765 4679999999999999999999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHh---cccCHHHHHHHHHHHHhCCC
Q 018782 176 IERGANPDEWSYNAILAYHC---DRAEVNMALRLITRMTKENV 215 (350)
Q Consensus 176 ~~~~~~~~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~ 215 (350)
.-..+. ++..+..+...+. ...+...+.+.+.+.++...
T Consensus 181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 876322 4445555555444 34567788899999888643
No 120
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.70 E-value=0.00019 Score=64.17 Aligned_cols=226 Identities=14% Similarity=0.124 Sum_probs=160.7
Q ss_pred HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782 21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG 100 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 100 (350)
...+++..|++....+.+..|....+-..-.-.+.+.|+.++|..+++.....+.. |..+...+-.+|.+.++.++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 45789999999999988776665555444444567899999999999888776555 88999999999999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC----------HHHHHH
Q 018782 101 MLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK----------VEEAYQ 170 (350)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~ 170 (350)
+|++.... .|+......+..+|.+.+++.+-.++--++.+. .+.+.+.|-++++.+...-. ..-|..
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 99999875 466778888889999998887765555555443 34566666666666654321 234556
Q ss_pred HHHHHHHcC-CCCCHHHHHHHHHHHhcccCHHHHHHHHHH-HHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782 171 LLDEMIERG-ANPDEWSYNAILAYHCDRAEVNMALRLITR-MTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR 248 (350)
Q Consensus 171 ~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 248 (350)
.++.+.+.+ .--+..-.......+-..+++++|.+++.. ..+.-..-+...-+.-+..+...++|.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 666666554 221222233333445578889999999943 434333334455556778888999999999999999887
Q ss_pred CC
Q 018782 249 GF 250 (350)
Q Consensus 249 ~~ 250 (350)
|.
T Consensus 256 ~~ 257 (932)
T KOG2053|consen 256 GN 257 (932)
T ss_pred CC
Confidence 43
No 121
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.67 E-value=2.3e-06 Score=61.12 Aligned_cols=101 Identities=17% Similarity=0.133 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 018782 41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120 (350)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 120 (350)
|.+......+...+...|++++|.+.|+.+...+ +.+...+..+..++...|++++|...+++..+.+ +.+...+..+
T Consensus 14 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l 91 (135)
T TIGR02552 14 SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHA 91 (135)
T ss_pred hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 3344555555566666666666666666665543 2255556666666666666666666666665543 2344455555
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhC
Q 018782 121 IHAFCEANDIHSVFRVLDSMKRY 143 (350)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~ 143 (350)
..++...|++++|...|+...+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 55666666666666666665553
No 122
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=0.00018 Score=61.43 Aligned_cols=302 Identities=12% Similarity=0.075 Sum_probs=154.5
Q ss_pred ccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC------------------------
Q 018782 22 KRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPV------------------------ 77 (350)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------------------ 77 (350)
+.+..++|+..++-+. +.+..+...-...+.+.|++++|.++|+.+.+.+.+-
T Consensus 91 rlnk~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v 167 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV 167 (652)
T ss_pred HcccHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 4455555555554221 2344466666778889999999999999997763221
Q ss_pred ---CHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhCCC---C-C--C-H------h-hHHHHHHHHHhcCCHhHHHHHH
Q 018782 78 ---DILAHNS---LLEAMCKAGNIDEAHGMLREMRSIGA---E-P--D-A------F-SYSIFIHAFCEANDIHSVFRVL 137 (350)
Q Consensus 78 ---~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~---~-~--~-~------~-~~~~l~~~~~~~~~~~~a~~~~ 137 (350)
...+|.. ....++..|++.+|+++++...+.+. . - + . . +-..+.-.+-..|+..+|..++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 0112222 23345678999999999999854321 0 0 1 0 1 1122334456789999999999
Q ss_pred HHHhhCCCCccHHH----HHHHHHHHHccCCH----------------HHHHHHH-------------------------
Q 018782 138 DSMKRYNLVPNVFT----YNCIIRKLCKNEKV----------------EEAYQLL------------------------- 172 (350)
Q Consensus 138 ~~~~~~~~~~~~~~----~~~l~~~~~~~g~~----------------~~a~~~~------------------------- 172 (350)
...++.. ++|... -|.++..-....-+ +.++..+
T Consensus 248 ~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~ 326 (652)
T KOG2376|consen 248 VDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV 326 (652)
T ss_pred HHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 9887765 233211 11121110000000 0000000
Q ss_pred HHHHHc--CCCCCHHHHHHHHHHHh--cccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHH-----
Q 018782 173 DEMIER--GANPDEWSYNAILAYHC--DRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWE----- 243 (350)
Q Consensus 173 ~~~~~~--~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----- 243 (350)
++.... +..| ...+.+++..+. +...+..+.+++....+....-...+....+......|+++.|.+++.
T Consensus 327 r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~ 405 (652)
T KOG2376|consen 327 RELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLES 405 (652)
T ss_pred HHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 000000 1111 233444444333 222456666666666554333234455556666777788888888777
Q ss_pred ---HHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 018782 244 ---SMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE------GIPPYSSTVEMLRNRLVGLGFLDIIEILAD 314 (350)
Q Consensus 244 ---~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 314 (350)
.+.+.+..|-.+.+ ++..+.+. ++.+.|..++...+.. +-..-..++..++..-.+.|+-++|..+++
T Consensus 406 ~~ss~~~~~~~P~~V~a--iv~l~~~~-~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le 482 (652)
T KOG2376|consen 406 WKSSILEAKHLPGTVGA--IVALYYKI-KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE 482 (652)
T ss_pred hhhhhhhhccChhHHHH--HHHHHHhc-cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence 55555555544332 33323333 4444455555444321 101122233444444455677777777777
Q ss_pred HhhccCCCcHHHHHHHh
Q 018782 315 KMERSTSCTIQELANAM 331 (350)
Q Consensus 315 ~~~~~~~~~~~~~~~~l 331 (350)
++.+.++...+.+...+
T Consensus 483 el~k~n~~d~~~l~~lV 499 (652)
T KOG2376|consen 483 ELVKFNPNDTDLLVQLV 499 (652)
T ss_pred HHHHhCCchHHHHHHHH
Confidence 77776555555444433
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.63 E-value=2.1e-06 Score=61.30 Aligned_cols=105 Identities=16% Similarity=0.038 Sum_probs=90.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018782 11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMC 90 (350)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (350)
.....+...+...|++++|.+.|+.+....|.+...+..+..++...|++++|...+++..+.+ +.+...+..+..++.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 4456677888899999999999999988778899999999999999999999999999988874 447888888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 018782 91 KAGNIDEAHGMLREMRSIGAEPDAFSYS 118 (350)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 118 (350)
..|++++|...|+...+. .|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 999999999999999985 35554443
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=0.00011 Score=55.98 Aligned_cols=188 Identities=14% Similarity=0.106 Sum_probs=128.4
Q ss_pred cCCHHHHHHHHHHHHhc---C-CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 018782 57 VGELSEARKLFDEMLER---K-CPVDILA-HNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIH 131 (350)
Q Consensus 57 ~~~~~~a~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 131 (350)
..+.++..+++.+++.. | ..++..+ |..++-+....|+.+.|...++++... ++-+...-..-...+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 34677777777776632 3 3444433 444555666788888888888888776 3333333333333445678888
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHH
Q 018782 132 SVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMT 211 (350)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 211 (350)
+|+++++.+.+.+ +.|..++---+...-..|+.-+|++-+....+.-+. |...|.-+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8999998888776 456666665566666677777888888887776444 88888888888888889998888888887
Q ss_pred hCCCCCChhHHHHHHHHHHHcC---CHhHHHHHHHHHHhc
Q 018782 212 KENVMPDRHTYNMVLKLLVRVG---RFDRATEVWESMEKR 248 (350)
Q Consensus 212 ~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 248 (350)
-.. +.++..+..+...+...| ++..+.++|.+..+.
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 753 234455555665554443 567788888888775
No 125
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.58 E-value=0.00042 Score=63.13 Aligned_cols=158 Identities=15% Similarity=0.089 Sum_probs=88.1
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 018782 148 NVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLK 227 (350)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 227 (350)
.+.+|+.+..+-.+.|...+|.+-|-+. .|+..|..++....+.|.+++-.+++....+..-.|.. =+.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence 3456777777777777777776665332 26667777777777777777777777776665444433 345667
Q ss_pred HHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh
Q 018782 228 LLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLD 307 (350)
Q Consensus 228 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 307 (350)
+|++.+++.+.++++. .||......+-.-+... |.++.|.-+|.. ...|..|...+...|+++
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~-~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEE-KMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhh-hhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHH
Confidence 7777777666554431 24544444444443333 555554444432 223444444555555555
Q ss_pred HHHHHHHHhhccCCCcHHHHHHHhc
Q 018782 308 IIEILADKMERSTSCTIQELANAMR 332 (350)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (350)
.|....++... ..+|..+..+++
T Consensus 1238 ~AVD~aRKAns--~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1238 GAVDAARKANS--TKTWKEVCFACV 1260 (1666)
T ss_pred HHHHHhhhccc--hhHHHHHHHHHh
Confidence 55554444432 234444444433
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=0.00018 Score=60.11 Aligned_cols=236 Identities=14% Similarity=0.115 Sum_probs=135.4
Q ss_pred HHHccC-ChHHHHHHHHHhhh----cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHh
Q 018782 19 ALCKRK-HVKVAHQFFDNAKH----EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERK--CPVDILAHNSLLEAMCK 91 (350)
Q Consensus 19 ~~~~~g-~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 91 (350)
.+.+.| +.....+.|+++.. +..|... ++..=.-..++.++...-++++..+ ..|+...+...+.+...
T Consensus 211 ~L~raGydp~gM~~ff~rl~~~~~~~~~~p~y----l~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~ 286 (484)
T COG4783 211 TLVRAGYDPQGMPEFFERLADQLRYGGQPPEY----LLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYE 286 (484)
T ss_pred HHHHcCCCchhHHHHHHHHHHHHhcCCCCChH----HhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhc
Confidence 334444 34455666776652 2222221 2222233345556666666665432 23455555555555444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 018782 92 AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQL 171 (350)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 171 (350)
...-..+-.++.+..+. .....-|. ....+...|+.+.|+..++.+.... +.|..........+.+.++..+|.+.
T Consensus 287 ~~~~~~~~~~~~~~~~~--~~~aa~YG-~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~ 362 (484)
T COG4783 287 ALPNQQAADLLAKRSKR--GGLAAQYG-RALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIER 362 (484)
T ss_pred cccccchHHHHHHHhCc--cchHHHHH-HHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 33333333333333221 11122233 3334456677888888888776653 44555556666777788888888888
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC
Q 018782 172 LDEMIERGANPD-EWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGF 250 (350)
Q Consensus 172 ~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 250 (350)
++++.... |+ ....-.+..++.+.|++.+|..+++...... +.|+..|..|.++|...|+..++..-..+..
T Consensus 363 ~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~---- 435 (484)
T COG4783 363 LKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY---- 435 (484)
T ss_pred HHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH----
Confidence 88877763 33 4555666777778888888888887776654 4567778888888888887777766554432
Q ss_pred CCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782 251 YPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE 284 (350)
Q Consensus 251 ~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 284 (350)
... |+++.|...+....+.
T Consensus 436 --------------~~~-G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 436 --------------ALA-GRLEQAIIFLMRASQQ 454 (484)
T ss_pred --------------HhC-CCHHHHHHHHHHHHHh
Confidence 113 6677777766666655
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.57 E-value=8.2e-06 Score=58.93 Aligned_cols=87 Identities=11% Similarity=0.151 Sum_probs=38.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccC
Q 018782 86 LEAMCKAGNIDEAHGMLREMRSIGAEPDA--FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNE 163 (350)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (350)
...+...|++++|...|+.+......++. .....+...+...|++++|+..++...... .....+.....++.+.|
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCC
Confidence 34444455555555555555544311111 122223444445555555555554432221 22333444445555555
Q ss_pred CHHHHHHHHHH
Q 018782 164 KVEEAYQLLDE 174 (350)
Q Consensus 164 ~~~~a~~~~~~ 174 (350)
++++|...|+.
T Consensus 133 ~~~~A~~~y~~ 143 (145)
T PF09976_consen 133 DYDEARAAYQK 143 (145)
T ss_pred CHHHHHHHHHH
Confidence 55555555543
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=0.0001 Score=61.49 Aligned_cols=182 Identities=14% Similarity=0.111 Sum_probs=113.5
Q ss_pred CChHHHHHHHHHhhh---cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782 24 KHVKVAHQFFDNAKH---EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG 100 (350)
Q Consensus 24 g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 100 (350)
.++..+...-+.++. ...|+...+...+........-..+..++.+..+ +-......-..-.+...|+.++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHH
Confidence 345555555555544 2345555555555544443333333333332222 1122333334445556788888888
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 018782 101 MLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN-VFTYNCIIRKLCKNEKVEEAYQLLDEMIERG 179 (350)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 179 (350)
.++.+... .+-|+..+......+.+.++.++|.+.++++.... |+ ....-.+..++.+.|++.+|..++.......
T Consensus 328 ~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 328 LLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 88887775 33455555666677888888888888888887753 44 5556667778888888888888888877664
Q ss_pred CCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHh
Q 018782 180 ANPDEWSYNAILAYHCDRAEVNMALRLITRMTK 212 (350)
Q Consensus 180 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 212 (350)
.. |+..|..|..+|...|+..++.....+...
T Consensus 405 p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 405 PE-DPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CC-CchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 43 777888888888888887777766655443
No 129
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=0.00029 Score=56.51 Aligned_cols=159 Identities=10% Similarity=0.060 Sum_probs=94.1
Q ss_pred HHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782 17 LHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI 95 (350)
Q Consensus 17 ~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (350)
++-+....++..|+.+++--.. +......+-..+..++...|++++|...+..+.+. -.++...+..|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 3444556677778777776544 22222334445566677788888888888877764 344556666666666666777
Q ss_pred HHHHHHHHHHHhCC--------------CCC-----------CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHH
Q 018782 96 DEAHGMLREMRSIG--------------AEP-----------DAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVF 150 (350)
Q Consensus 96 ~~a~~~~~~~~~~~--------------~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 150 (350)
.+|..+-....+.. -+- +..---+|.......-.+.+|+++++.....+ |.-.
T Consensus 108 ~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~ 185 (557)
T KOG3785|consen 108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYI 185 (557)
T ss_pred HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhh
Confidence 77766554432210 000 00111223333333456788888888887654 5555
Q ss_pred HHHH-HHHHHHccCCHHHHHHHHHHHHHc
Q 018782 151 TYNC-IIRKLCKNEKVEEAYQLLDEMIER 178 (350)
Q Consensus 151 ~~~~-l~~~~~~~g~~~~a~~~~~~~~~~ 178 (350)
..|. +.-+|.+..-++-+.+++.-..+.
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 5554 345677888888888888776655
No 130
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.49 E-value=6.6e-05 Score=67.81 Aligned_cols=162 Identities=14% Similarity=0.046 Sum_probs=97.6
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHH
Q 018782 12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCP-VDILAHNSLLEAMC 90 (350)
Q Consensus 12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 90 (350)
.|..+...|+...+...|.+.|+....-.+.+..........|++..+++.|..+.-..-+.... .-...|....-.|.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 35666677776667777888888877655667777778888888888888888774333222100 01112222334455
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccH-HHHHHHHHHHHccCCHHHHH
Q 018782 91 KAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNV-FTYNCIIRKLCKNEKVEEAY 169 (350)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~ 169 (350)
..++...|+.-|+...... +-|...|..++.+|.+.|++..|.++|.+..... |+. ..---..-..+..|.+.+|.
T Consensus 574 ea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred CccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhhhHHHHH
Confidence 6666777777777666543 3356677777777877788777777777776542 322 11111222334556666666
Q ss_pred HHHHHHH
Q 018782 170 QLLDEMI 176 (350)
Q Consensus 170 ~~~~~~~ 176 (350)
..+..+.
T Consensus 651 d~l~~ii 657 (1238)
T KOG1127|consen 651 DALGLII 657 (1238)
T ss_pred HHHHHHH
Confidence 6665543
No 131
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=0.0002 Score=63.74 Aligned_cols=208 Identities=13% Similarity=0.129 Sum_probs=106.1
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhh--c------CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHH
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKH--E------FTPTV-KTYSILVRGLGDVGELSEARKLFDEMLERKCPVDIL 80 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 80 (350)
..+|..+.+.|.+..+++.|.-.+-.|.+ + ...+. ..=....-.....|.+++|+.+|++-+..
T Consensus 757 ~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------- 829 (1416)
T KOG3617|consen 757 DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------- 829 (1416)
T ss_pred hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH-------
Confidence 34566666666666666666655555532 0 00111 22222223334566677777777665543
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----------C------
Q 018782 81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY----------N------ 144 (350)
Q Consensus 81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~------ 144 (350)
..|=..|...|.|++|.++-+.--.. . -..||......+-..+|++.|+++|++...+ .
T Consensus 830 --DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 830 --DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred --HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 22334455667777777765543221 1 1235555666666777788887777653211 1
Q ss_pred ---CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhH
Q 018782 145 ---LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHT 221 (350)
Q Consensus 145 ---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (350)
-..+...|.....-+-..|+.+.|+.+|..... |-++++..|-.|+.++|-++-++ .-|...
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AA 969 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAA 969 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHH
Confidence 012344455555556667777777777766543 22233333344444444433322 112233
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHH
Q 018782 222 YNMVLKLLVRVGRFDRATEVWES 244 (350)
Q Consensus 222 ~~~l~~~~~~~~~~~~a~~~~~~ 244 (350)
...|.+.|...|++.+|..+|.+
T Consensus 970 cYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 970 CYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Confidence 33445555555555555555443
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.47 E-value=1.2e-05 Score=67.13 Aligned_cols=129 Identities=13% Similarity=0.060 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 018782 43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIH 122 (350)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 122 (350)
+......|+..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+...+..-..
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE 242 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44555666777777888888999998888773 33 44557777878888888888888888653 345666666777
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018782 123 AFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIE 177 (350)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (350)
.+...++.+.|+.+.+++.+.. +-+..+|..|..+|...|+++.|+..++.+.-
T Consensus 243 fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 7888888899999988888764 34556888888999999999999888877653
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.46 E-value=1.4e-05 Score=66.81 Aligned_cols=127 Identities=16% Similarity=0.179 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 018782 79 ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRK 158 (350)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (350)
-.....|+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +.+......-...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444566777788899999999999999864 44 34557888888899999999999988754 4466677777788
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHH
Q 018782 159 LCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMT 211 (350)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 211 (350)
+.+.++++.|+.+.+++.+..+. +..+|..|..+|...|+++.|+..+..+-
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999987433 56799999999999999999999888764
No 134
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.45 E-value=0.00077 Score=60.52 Aligned_cols=224 Identities=10% Similarity=0.198 Sum_probs=119.3
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 018782 54 LGDVGELSEARKLFDEMLERKCPVDILAHNSLLE--AMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIH 131 (350)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 131 (350)
....+++..|.+...++.++ .|+.. |...+. ...+.|+.++|..+++.....+.. |..|...+-.+|.+.++.+
T Consensus 19 ~ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d 94 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLD 94 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhh
Confidence 34567777777777777665 22322 222222 345677778887777776655433 6667777777777888888
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc-C---------HH
Q 018782 132 SVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRA-E---------VN 201 (350)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~---------~~ 201 (350)
+|..+|+...+. .|+......+..+|.+.+.+.+-.+.--++-+. .+.....+-++++...+.. . ..
T Consensus 95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 888888777664 366666666777777777665433333333332 1223444444444443211 1 12
Q ss_pred HHHHHHHHHHhCC-CCCChhHHHHHHHHHHHcCCHhHHHHHH-HHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHH
Q 018782 202 MALRLITRMTKEN-VMPDRHTYNMVLKLLVRVGRFDRATEVW-ESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFE 279 (350)
Q Consensus 202 ~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 279 (350)
-|.+..+.+.+.+ .--+..-.......+...|.+++|++++ ....+.-..-+...-+.-+.. .+..+++.+..++-.
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dl-lk~l~~w~~l~~l~~ 250 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDL-LKLLNRWQELFELSS 250 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHH-HHHhcChHHHHHHHH
Confidence 3444444444433 1112222222333445566677777776 333332111122222222332 233467777777777
Q ss_pred HHHhCC
Q 018782 280 MMVDEG 285 (350)
Q Consensus 280 ~~~~~~ 285 (350)
++...|
T Consensus 251 ~Ll~k~ 256 (932)
T KOG2053|consen 251 RLLEKG 256 (932)
T ss_pred HHHHhC
Confidence 776665
No 135
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.40 E-value=5.4e-05 Score=54.67 Aligned_cols=124 Identities=16% Similarity=0.204 Sum_probs=63.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHH
Q 018782 13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPT---VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD--ILAHNSLLE 87 (350)
Q Consensus 13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 87 (350)
|..++..+ ..++...+...++.+....+.+ ......+...+...|++++|...|+........|+ ......+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444444 2555566655566655544444 23333344555556666666666666665532222 122333455
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 018782 88 AMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDS 139 (350)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 139 (350)
.+...|++++|+..++..... ......+.....++.+.|+.++|...|+.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555666666666666543222 12333444555566666666666666554
No 136
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.39 E-value=4.3e-05 Score=67.70 Aligned_cols=241 Identities=17% Similarity=0.159 Sum_probs=141.5
Q ss_pred CCHHHHHHHHH--HHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C--------C
Q 018782 42 PTVKTYSILVR--GLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI-G--------A 110 (350)
Q Consensus 42 ~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--------~ 110 (350)
-|..+...+++ .|...|+.+.|.+-++-++ +...|..+.+.|.+.++.+-|.-.+-.|... | -
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 45555555554 4566778888777776655 3467777888887777766666555444321 0 1
Q ss_pred CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 018782 111 EPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAI 190 (350)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 190 (350)
.++ .+=....-.....|-+++|..+|++..+.. .|=+.|-..|.+++|.++-+.--+... ..||...
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHH
Confidence 121 122223333456677778887777766532 333556667777777776654322221 2344444
Q ss_pred HHHHhcccCHHHHHHHHHHHHh----------CC---------CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC
Q 018782 191 LAYHCDRAEVNMALRLITRMTK----------EN---------VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFY 251 (350)
Q Consensus 191 l~~~~~~~~~~~a~~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 251 (350)
...+-..++.+.|++.|++... .. -..|...|......+...|+.+.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 4555556666666666654311 10 122445556666666677888888888877765
Q ss_pred CCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782 252 PSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME 317 (350)
Q Consensus 252 p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 317 (350)
|-.+++..|.. |+.++|-.+-++ .| |...-..+.+.|...|++.+|..+|.+..
T Consensus 941 -----~fs~VrI~C~q-Gk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQ-GKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred -----hhhheeeEeec-cCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 44555555655 777777666543 22 55556677777777777777777776654
No 137
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=0.00043 Score=58.50 Aligned_cols=228 Identities=16% Similarity=0.111 Sum_probs=134.5
Q ss_pred HHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH------
Q 018782 14 DQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLE------ 87 (350)
Q Consensus 14 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------ 87 (350)
..+..+..+..++..|++-+....... .+...++....+|...|.+..+...-+...+.|-. ...-|+.+..
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhh
Confidence 345666667777888888877766643 56666677777777888777777777766665433 3333333333
Q ss_pred -HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccH-HHHHHHHHHHHccCCH
Q 018782 88 -AMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNV-FTYNCIIRKLCKNEKV 165 (350)
Q Consensus 88 -~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 165 (350)
++.+.++++.++..|.+....-..|+. ..+....+++....+...-.+ |.. .-...-...+.+.|++
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCH
Confidence 344456667777777775543222221 122233444444444433322 221 1122225566777778
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHH
Q 018782 166 EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESM 245 (350)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 245 (350)
..|...|.+++...+. |...|.....+|.+.+.+..|+.-.+...+.+. +....|..=..++....++++|.+.|.+.
T Consensus 375 ~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p-~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDP-NFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888777777533 677777777777777777777777766666532 23344444455555566777777777777
Q ss_pred HhcCCCCCHHHHH
Q 018782 246 EKRGFYPSVSTYS 258 (350)
Q Consensus 246 ~~~~~~p~~~~~~ 258 (350)
.+. .|+..-+.
T Consensus 453 le~--dp~~~e~~ 463 (539)
T KOG0548|consen 453 LEL--DPSNAEAI 463 (539)
T ss_pred Hhc--CchhHHHH
Confidence 765 34444333
No 138
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.37 E-value=3e-05 Score=53.86 Aligned_cols=97 Identities=14% Similarity=0.060 Sum_probs=52.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CCHHHHHHHH
Q 018782 12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPT---VKTYSILVRGLGDVGELSEARKLFDEMLERKCP--VDILAHNSLL 86 (350)
Q Consensus 12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 86 (350)
++..+...+...|++++|...|+.+....|.+ ...+..+..++.+.|+++.|.+.|+.+...... ....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44455555556666666666666654433222 334555566666666666666666665543211 1234455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 018782 87 EAMCKAGNIDEAHGMLREMRSI 108 (350)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~ 108 (350)
.++...|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555666666666666666554
No 139
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00086 Score=61.22 Aligned_cols=260 Identities=14% Similarity=0.127 Sum_probs=154.4
Q ss_pred cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018782 23 RKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML 102 (350)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 102 (350)
-+++++|.++-++.. .+.+|..+..+-.+.|.+.+|++-|-+. .|+..|..++....+.|.+++..+++
T Consensus 1088 i~~ldRA~efAe~~n-----~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCN-----EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred hhhHHHHHHHHHhhC-----ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 467788888777764 4578899999999999999888877443 27788889999999999999999998
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----
Q 018782 103 REMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER---- 178 (350)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 178 (350)
...++..-+|.. =+.|+-+|++.+++.+...++. -|+......+..-|...|.++.|.-+|......
T Consensus 1157 ~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La 1227 (1666)
T KOG0985|consen 1157 LMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLA 1227 (1666)
T ss_pred HHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHH
Confidence 888877655554 3567888888888777655441 144444444444444444444444333221100
Q ss_pred ----------------CCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHH
Q 018782 179 ----------------GANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVW 242 (350)
Q Consensus 179 ----------------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 242 (350)
....+..||..+-.+|...+.+..| +|...++.....-..-++..|-..|-+++...++
T Consensus 1228 ~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1228 STLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence 0011444555555555554444332 2222223334445667777788888888888777
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC-CCC------CCHHHHHHHHHHHHcCCChhHHH
Q 018782 243 ESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE-GIP------PYSSTVEMLRNRLVGLGFLDIIE 310 (350)
Q Consensus 243 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~a~ 310 (350)
+...... +.....|+-+.-.|.+ =++++..+.++-.-.. ++| .....|..++-.|.+-..++.|.
T Consensus 1303 Ea~LGLE-RAHMgmfTELaiLYsk--ykp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1303 EAGLGLE-RAHMGMFTELAILYSK--YKPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred Hhhhchh-HHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 7665321 1233445555444443 3555555544443221 211 13455666666666666666554
No 140
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.35 E-value=1.5e-05 Score=67.01 Aligned_cols=124 Identities=18% Similarity=0.209 Sum_probs=92.8
Q ss_pred cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 018782 39 EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER--KCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFS 116 (350)
Q Consensus 39 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 116 (350)
+.+.+......++..+....+++.+..++-+.... ....-..+..++++.|.+.|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45666777777788777777888888888777654 2222234456888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHcc
Q 018782 117 YSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKN 162 (350)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 162 (350)
++.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888876666566666666666555554
No 141
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.34 E-value=2.3e-05 Score=65.89 Aligned_cols=121 Identities=12% Similarity=0.198 Sum_probs=83.1
Q ss_pred CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhH
Q 018782 144 NLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER--GANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHT 221 (350)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (350)
+.+.+......++..+....+.+.+..++.+.... ....-..|..++++.|...|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33556666677777777777777777777776654 2222344556777777777777777777777777777777777
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782 222 YNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGL 264 (350)
Q Consensus 222 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 264 (350)
++.|+..+.+.|++..|.++...|...+...+..++...+.++
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 7777777777777777777777777665555666655555543
No 142
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.32 E-value=1.5e-06 Score=45.49 Aligned_cols=33 Identities=36% Similarity=0.681 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC
Q 018782 221 TYNMVLKLLVRVGRFDRATEVWESMEKRGFYPS 253 (350)
Q Consensus 221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 253 (350)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 456666666666666666666666666666655
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.30 E-value=1.7e-05 Score=52.34 Aligned_cols=90 Identities=20% Similarity=0.151 Sum_probs=39.5
Q ss_pred HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782 16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI 95 (350)
Q Consensus 16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (350)
+...+...|++++|...++.+....+.+...+..+..++...+++++|.+.++....... .+..++..+...+...|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhH
Confidence 333444444555555554444433333334444444444444444444444444444321 1223444444444444444
Q ss_pred HHHHHHHHHHH
Q 018782 96 DEAHGMLREMR 106 (350)
Q Consensus 96 ~~a~~~~~~~~ 106 (350)
+.|...+....
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T cd00189 85 EEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 144
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.29 E-value=1.8e-06 Score=44.77 Aligned_cols=33 Identities=33% Similarity=0.669 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Q 018782 220 HTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP 252 (350)
Q Consensus 220 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 252 (350)
.+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 356666666666666666666666666655554
No 145
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.26 E-value=2.1e-06 Score=44.84 Aligned_cols=31 Identities=42% Similarity=0.828 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 018782 82 HNSLLEAMCKAGNIDEAHGMLREMRSIGAEP 112 (350)
Q Consensus 82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (350)
|+.++.+|++.|++++|.++|.+|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 4444444444444444444444444444444
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.26 E-value=3.4e-05 Score=54.89 Aligned_cols=100 Identities=14% Similarity=0.047 Sum_probs=84.4
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 018782 42 PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFI 121 (350)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 121 (350)
.+......+...+...|++++|.++|+.+....+. +..-|..|..++-..|++.+|+..|....... +-|+..+..+.
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag 110 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 45566677777888999999999999998887544 77888889999999999999999999998876 35777888899
Q ss_pred HHHHhcCCHhHHHHHHHHHhhC
Q 018782 122 HAFCEANDIHSVFRVLDSMKRY 143 (350)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~ 143 (350)
.++...|+.+.|.+.|+..+..
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999988664
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.24 E-value=0.0001 Score=51.15 Aligned_cols=98 Identities=15% Similarity=0.067 Sum_probs=51.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHhhHHHHH
Q 018782 46 TYSILVRGLGDVGELSEARKLFDEMLERKCP--VDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAE--PDAFSYSIFI 121 (350)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 121 (350)
++..++..+.+.|++++|.+.|+.+.+.... .....+..+..++.+.|+++.|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555555666666666666666544211 11334445556666666666666666665543211 1123444555
Q ss_pred HHHHhcCCHhHHHHHHHHHhhC
Q 018782 122 HAFCEANDIHSVFRVLDSMKRY 143 (350)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~ 143 (350)
.++...|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555566666666666665554
No 148
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.23 E-value=0.0014 Score=59.69 Aligned_cols=219 Identities=12% Similarity=0.084 Sum_probs=150.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHH
Q 018782 94 NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLD 173 (350)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 173 (350)
+...|+..|-+.....+ .=...|..|...|+...|...|.+.|++..+.. ..+..........|+...+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 36777777777766432 224478889999998889999999999998765 4567788888999999999999999844
Q ss_pred HHHHcCCC-CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Q 018782 174 EMIERGAN-PDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP 252 (350)
Q Consensus 174 ~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 252 (350)
..-+.... .-...|....-.|...++...+..-|+......+ .|...|..+..+|...|.+..|.++|.++... .|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 33332111 0112233344456788899999999999888654 47788999999999999999999999998875 55
Q ss_pred CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782 253 SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE------GIPPYSSTVEMLRNRLVGLGFLDIIEILADKME 317 (350)
Q Consensus 253 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 317 (350)
+..--...........|.+.+++..+...... +...-..++......+.-.|-...+..++++-.
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi 698 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI 698 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 54332222222222448999999988877543 111233445555555555566666666666543
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.23 E-value=6.4e-05 Score=62.96 Aligned_cols=103 Identities=15% Similarity=0.068 Sum_probs=85.4
Q ss_pred HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782 16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI 95 (350)
Q Consensus 16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (350)
-...+...|+++.|++.|+++....|.+...|..+..++...|++++|+..++++++... .+...|..+..++...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 345667789999999999999887788899999999999999999999999999988743 3778888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHH
Q 018782 96 DEAHGMLREMRSIGAEPDAFSYSIFI 121 (350)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~~l~ 121 (350)
++|+..|++..+.. |+.......+
T Consensus 87 ~eA~~~~~~al~l~--P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLA--PGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 99999999998853 4444333333
No 150
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.23 E-value=2.8e-06 Score=44.04 Aligned_cols=28 Identities=43% Similarity=0.585 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 018782 82 HNSLLEAMCKAGNIDEAHGMLREMRSIG 109 (350)
Q Consensus 82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 109 (350)
|+.++.+|.+.|+++.|.++|+.|.+.|
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333333333333333333333333333
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.22 E-value=5.2e-05 Score=61.22 Aligned_cols=131 Identities=18% Similarity=0.192 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782 11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGD-VGELSEARKLFDEMLERKCPVDILAHNSLLEAM 89 (350)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (350)
.+|..++....+.+..+.|..+|.++......+..+|......-.. .++.+.|.++|+...+. ++.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 3566667777776677777777777765434445555555555333 45555577777776665 444666777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 018782 90 CKAGNIDEAHGMLREMRSIGAEPDA---FSYSIFIHAFCEANDIHSVFRVLDSMKRY 143 (350)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (350)
...++.+.|..+|++.... +.++. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777654 22222 36666666666667777777766666553
No 152
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.20 E-value=0.0017 Score=55.21 Aligned_cols=151 Identities=12% Similarity=0.214 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHH
Q 018782 95 IDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVP-NVFTYNCIIRKLCKNEKVEEAYQLLD 173 (350)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 173 (350)
.+.....+++++..-..--..+|..+++...+..-++.|..+|.++.+.+..+ ++.+.++++.-++ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 45556666666543222223356667777777777888888888887766555 5666677776665 457777888887
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782 174 EMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPD--RHTYNMVLKLLVRVGRFDRATEVWESMEK 247 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 247 (350)
--.+.-.. ++.--...+..+...++-..+..+|++....++.++ ...|..++.--..-|++..+.++-+++..
T Consensus 426 LGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 65554211 333344556666677777778888888777644443 35777777777777888877777766654
No 153
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.19 E-value=5.8e-05 Score=49.88 Aligned_cols=76 Identities=14% Similarity=0.290 Sum_probs=40.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcC--------CHhHHHHHHHHHhhCCCCccHHHHHHH
Q 018782 85 LLEAMCKAGNIDEAHGMLREMRSIGA-EPDAFSYSIFIHAFCEAN--------DIHSVFRVLDSMKRYNLVPNVFTYNCI 155 (350)
Q Consensus 85 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (350)
.|..+...+++.....+|+.++..|+ -|+..+|+.++.+.++.. ..-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444445666666666666666665 556666666665554432 122344455555555555555555555
Q ss_pred HHHHH
Q 018782 156 IRKLC 160 (350)
Q Consensus 156 ~~~~~ 160 (350)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 54443
No 154
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.16 E-value=0.0001 Score=52.53 Aligned_cols=95 Identities=11% Similarity=-0.008 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 018782 221 TYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL 300 (350)
Q Consensus 221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (350)
....+...+...|++++|.++|+-+... .|....|..=+.+++...|++++|+..|......+ +.++..+..+..++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 3445556667788888888888887764 45555555555555666688888888888888777 67788888888888
Q ss_pred HcCCChhHHHHHHHHhhc
Q 018782 301 VGLGFLDIIEILADKMER 318 (350)
Q Consensus 301 ~~~g~~~~a~~~~~~~~~ 318 (350)
...|+.+.|.+.|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888887654
No 155
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.15 E-value=0.00044 Score=60.91 Aligned_cols=17 Identities=12% Similarity=0.034 Sum_probs=9.3
Q ss_pred HHHHHHHccCChHHHHH
Q 018782 15 QLLHALCKRKHVKVAHQ 31 (350)
Q Consensus 15 ~l~~~~~~~g~~~~a~~ 31 (350)
+.|+.|.+.|....|..
T Consensus 620 aaiqlyika~~p~~a~~ 636 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAAR 636 (1636)
T ss_pred HHHHHHHHcCCchHHHH
Confidence 34556666666555544
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.15 E-value=8e-05 Score=49.03 Aligned_cols=95 Identities=20% Similarity=0.177 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 018782 222 YNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLV 301 (350)
Q Consensus 222 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (350)
+..+...+...|++++|...++.+.+... .+...+..+...+... |++++|.+.++...... +.+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKL-GKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 34455556666666666666666655411 1223333344444333 66666776666666554 444456666666666
Q ss_pred cCCChhHHHHHHHHhhcc
Q 018782 302 GLGFLDIIEILADKMERS 319 (350)
Q Consensus 302 ~~g~~~~a~~~~~~~~~~ 319 (350)
..|+++.|...+.+..+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 667777776666665543
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.14 E-value=7.6e-06 Score=52.82 Aligned_cols=80 Identities=18% Similarity=0.161 Sum_probs=41.6
Q ss_pred cCChHHHHHHHHHhhhcCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782 23 RKHVKVAHQFFDNAKHEFTP--TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG 100 (350)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 100 (350)
.|+++.|+.+++++....|. +...+..+..++.+.|++++|..++++ .+.+.. +......+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666666666666553331 334444456666666666666666655 222111 22333344566666666666666
Q ss_pred HHHH
Q 018782 101 MLRE 104 (350)
Q Consensus 101 ~~~~ 104 (350)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 158
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.12 E-value=0.0013 Score=58.17 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=59.8
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHH
Q 018782 123 AFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNM 202 (350)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 202 (350)
+.....+|.+|+.+++.+.... ....-|..+...|...|+++.|.++|-+.- .++-.|..|.+.|+|+.
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 3344556666666666665543 223345556667777777777777664421 23445566677777777
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHH
Q 018782 203 ALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWE 243 (350)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 243 (350)
|.++-.+.. |.......|-.-..-+-..|.+.+|.++|-
T Consensus 810 a~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 810 AFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 766655432 223333444444444555566666555543
No 159
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.12 E-value=0.0002 Score=57.88 Aligned_cols=130 Identities=11% Similarity=0.167 Sum_probs=66.7
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 018782 116 SYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK-NEKVEEAYQLLDEMIERGANPDEWSYNAILAYH 194 (350)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 194 (350)
+|..++....+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|..+|+...+.- ..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-PSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 45555566666666666666666665432 2233333333333222 344555666666655542 22555555666666
Q ss_pred hcccCHHHHHHHHHHHHhCCCCCC---hhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782 195 CDRAEVNMALRLITRMTKENVMPD---RHTYNMVLKLLVRVGRFDRATEVWESMEKR 248 (350)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 248 (350)
...++.+.|..+|++.... +.++ ...|...++.-.+.|+++.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666665543 2111 135666666666666666666666666553
No 160
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.11 E-value=0.0021 Score=50.75 Aligned_cols=184 Identities=11% Similarity=0.133 Sum_probs=113.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 018782 43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAH---NSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI 119 (350)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 119 (350)
++..+-.....+...|++++|.+.|+++....+. +.... -.++.++.+.+++++|...+++..+..+.-....+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4444545666667789999999999999886433 23332 4567888999999999999999988643222223333
Q ss_pred HHHHHHh--cC---------------C---HhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 018782 120 FIHAFCE--AN---------------D---IHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG 179 (350)
Q Consensus 120 l~~~~~~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 179 (350)
.+.+.+. .+ | ...|+..|+.+++. |=.+.-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH-
Confidence 3333221 11 1 12344555555543 22233344555444444322
Q ss_pred CCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC--CCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 018782 180 ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE--NVMPDRHTYNMVLKLLVRVGRFDRATEVWESME 246 (350)
Q Consensus 180 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 246 (350)
=..---.+...|.+.|.+..|..-++.+++. +.+........++.+|...|..++|..+...+.
T Consensus 174 ---la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ---LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ---HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0011114556678888888888888888875 223344566778888989999998888777664
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.10 E-value=9.9e-06 Score=52.27 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=45.3
Q ss_pred cCCHhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 018782 232 VGRFDRATEVWESMEKRGFY-PSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIE 310 (350)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 310 (350)
.|+++.|..+++++.+.... |+...+..+..++... |++++|..+++. ...+ +.+......+.+++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~-~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQ-GKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHT-THHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHC-CCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46677777777777654221 1233333345555544 777777777766 3222 223444455567777777777777
Q ss_pred HHHHH
Q 018782 311 ILADK 315 (350)
Q Consensus 311 ~~~~~ 315 (350)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77664
No 162
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.09 E-value=0.00015 Score=48.02 Aligned_cols=76 Identities=16% Similarity=0.405 Sum_probs=43.8
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhhcc-------CcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 018782 226 LKLLVRVGRFDRATEVWESMEKRGF-YPSVSTYSVMVHGLCKKK-------GKLEEACKYFEMMVDEGIPPYSSTVEMLR 297 (350)
Q Consensus 226 ~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 297 (350)
|..+...+++.....+|+.++..|+ .|+..+|+.++.+.+++. ++.-..+.+++.|+..+++|+..+|..++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444666666666666666666 566666666666655432 12334555666666666666666666666
Q ss_pred HHHH
Q 018782 298 NRLV 301 (350)
Q Consensus 298 ~~~~ 301 (350)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 6554
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.07 E-value=0.00077 Score=54.70 Aligned_cols=126 Identities=14% Similarity=0.142 Sum_probs=63.5
Q ss_pred HHhcc-cCHHHHHHHHHHHHhC----CC-CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC-----CCHH--HHHH
Q 018782 193 YHCDR-AEVNMALRLITRMTKE----NV-MPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFY-----PSVS--TYSV 259 (350)
Q Consensus 193 ~~~~~-~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----p~~~--~~~~ 259 (350)
.|... ++++.|.+.|++..+. +. ..-...+..+...+.+.|++++|.++|++....... .+.. .+..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 6666666666665432 10 001234556667777777888888888777653221 1221 1233
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHc--CCChhHHHHHHHHhhccC
Q 018782 260 MVHGLCKKKGKLEEACKYFEMMVDEG--IPP--YSSTVEMLRNRLVG--LGFLDIIEILADKMERST 320 (350)
Q Consensus 260 ll~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~ 320 (350)
+| ++... |++..|.+.+++..... +.. .......|+.++-. ...++.++.-|+.+.+.+
T Consensus 203 ~l-~~L~~-~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 203 IL-CHLAM-GDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp HH-HHHHT-T-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---
T ss_pred HH-HHHHc-CCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccH
Confidence 33 22323 77778888887776542 222 23455666666653 234555666666665543
No 164
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.06 E-value=0.0033 Score=49.63 Aligned_cols=185 Identities=13% Similarity=0.117 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh---HHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHH
Q 018782 78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFS---YSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNC 154 (350)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (350)
+...+......+...|++++|.+.|+.+...-.. +... .-.++.++.+.++++.|...+++..+....-....+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 4555555666778899999999999999986332 2222 24567888999999999999999987532211223333
Q ss_pred HHHHHHc--c---------------CC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC
Q 018782 155 IIRKLCK--N---------------EK---VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN 214 (350)
Q Consensus 155 l~~~~~~--~---------------g~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 214 (350)
.+.+.+. . .+ ...|+..|+.+++. -|+. .-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-
Confidence 3333221 1 12 23556666666665 2333 2234444444333321
Q ss_pred CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 018782 215 VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR--GFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVD 283 (350)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 283 (350)
.-..- -.+.+-|.+.|.+..|..-++.+.+. +..........++.+|... |..++|..+...+..
T Consensus 174 --la~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l-g~~~~a~~~~~~l~~ 240 (243)
T PRK10866 174 --LAKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL-QLNAQADKVAKIIAA 240 (243)
T ss_pred --HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc-CChHHHHHHHHHHhc
Confidence 11111 25678899999999999999999875 2222345566777887766 999999988876643
No 165
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.04 E-value=0.00018 Score=53.84 Aligned_cols=102 Identities=21% Similarity=0.248 Sum_probs=58.2
Q ss_pred ccHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhH
Q 018782 147 PNVFTYNCIIRKLCK-----NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHT 221 (350)
Q Consensus 147 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (350)
.+..+|..++..|.+ .|..+-....+..|.+.|+.-|..+|+.|+..+=+ |.+- |. ..
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~-n~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PR-NF 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------cc-cH
Confidence 455566666655543 24555555555566666666666666666554432 1111 11 11
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhc
Q 018782 222 YNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKK 267 (350)
Q Consensus 222 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 267 (350)
+..+..- .-.+-+-|.+++++|...|+-||..++..++..|.+.
T Consensus 108 fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 108 FQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 1111111 1234566888899999999999999999998887544
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.02 E-value=0.00061 Score=59.79 Aligned_cols=144 Identities=8% Similarity=0.042 Sum_probs=100.4
Q ss_pred HhhhcCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc--------CCHHHHHHH
Q 018782 35 NAKHEFTPTVKTYSILVRGLGDV-----GELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA--------GNIDEAHGM 101 (350)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~ 101 (350)
.+....+.+...|...+++.... +..+.|..+|++..+..+. ....|..+..++... .+...+.+.
T Consensus 328 ~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~ 406 (517)
T PRK10153 328 RLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTE 406 (517)
T ss_pred HHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 33455677888888888775432 2377899999998887332 445555544443322 123445555
Q ss_pred HHHHHhC-CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 018782 102 LREMRSI-GAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180 (350)
Q Consensus 102 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 180 (350)
..+.... ..+.+...+..+.......|++++|...+++....+ |+...|..+...+...|++++|.+.+++....++
T Consensus 407 ~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 407 LDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 5554442 133455677777777777899999999999998865 6888999999999999999999999999888744
Q ss_pred C
Q 018782 181 N 181 (350)
Q Consensus 181 ~ 181 (350)
.
T Consensus 485 ~ 485 (517)
T PRK10153 485 G 485 (517)
T ss_pred C
Confidence 3
No 167
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.00 E-value=0.00076 Score=50.31 Aligned_cols=63 Identities=16% Similarity=0.063 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782 45 KTYSILVRGLGDVGELSEARKLFDEMLERKCPVD--ILAHNSLLEAMCKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 107 (350)
..+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555555555544322111 23444445555555555555555555544
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.00 E-value=0.0049 Score=50.09 Aligned_cols=129 Identities=11% Similarity=0.127 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcc-CCHHHHHHHHHHHHHc---CCCCC--HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCC-----Ch
Q 018782 151 TYNCIIRKLCKN-EKVEEAYQLLDEMIER---GANPD--EWSYNAILAYHCDRAEVNMALRLITRMTKENVMP-----DR 219 (350)
Q Consensus 151 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~---~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~ 219 (350)
.+..+...|... |+++.|.+.|.+..+. .-.+. ..++..+...+.+.+++++|.++|+++....... +.
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 445555666666 7888888888776543 11111 2345566677788888888888888876643221 11
Q ss_pred -hHHHHHHHHHHHcCCHhHHHHHHHHHHhc--CCCCC--HHHHHHHHHHHhhccCc---HHHHHHHHHHH
Q 018782 220 -HTYNMVLKLLVRVGRFDRATEVWESMEKR--GFYPS--VSTYSVMVHGLCKKKGK---LEEACKYFEMM 281 (350)
Q Consensus 220 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~p~--~~~~~~ll~~~~~~~~~---~~~a~~~~~~~ 281 (350)
..+...+-++...||+..|.+.+++.... ++..+ ......+|.++- . |+ +..++.-|+.+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-~-~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-E-GDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH-T-T-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-h-CCHHHHHHHHHHHccc
Confidence 12233344666778888888888887754 22222 234455666643 2 44 44444444443
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.99 E-value=0.0004 Score=58.28 Aligned_cols=93 Identities=13% Similarity=0.024 Sum_probs=80.1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 018782 50 LVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAND 129 (350)
Q Consensus 50 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (350)
....+...|++++|++.|++.++.... +...|..+..++...|++++|+..++++++.. +.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence 355667789999999999999987544 78889999999999999999999999999864 3466788888999999999
Q ss_pred HhHHHHHHHHHhhCC
Q 018782 130 IHSVFRVLDSMKRYN 144 (350)
Q Consensus 130 ~~~a~~~~~~~~~~~ 144 (350)
+++|...|++..+..
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998864
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.99 E-value=0.00066 Score=50.63 Aligned_cols=63 Identities=16% Similarity=0.032 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782 186 SYNAILAYHCDRAEVNMALRLITRMTKENVMPD--RHTYNMVLKLLVRVGRFDRATEVWESMEKR 248 (350)
Q Consensus 186 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 248 (350)
.+..+...+...|++++|...+++.......+. ...+..+..++.+.|++++|...+++..+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344444555556666666666666554322211 234555555566666666666666655543
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.99 E-value=0.0013 Score=57.89 Aligned_cols=144 Identities=17% Similarity=0.152 Sum_probs=102.1
Q ss_pred cCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhc--------CCHhHHHHHHH
Q 018782 73 RKCPVDILAHNSLLEAMCKAG-----NIDEAHGMLREMRSIGAEPD-AFSYSIFIHAFCEA--------NDIHSVFRVLD 138 (350)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~ 138 (350)
...+.+...|...+++..... +...|..+|++..+. .|+ ...+..+..++... .++..+.+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345668899998888755432 367999999999986 454 34454444433222 12344555555
Q ss_pred HHhhC-CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCC
Q 018782 139 SMKRY-NLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMP 217 (350)
Q Consensus 139 ~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 217 (350)
+.... ..+.+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....+ |
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--P 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C
Confidence 54332 134456778888777777899999999999999885 578889999999999999999999999988854 4
Q ss_pred ChhHH
Q 018782 218 DRHTY 222 (350)
Q Consensus 218 ~~~~~ 222 (350)
...+|
T Consensus 485 ~~pt~ 489 (517)
T PRK10153 485 GENTL 489 (517)
T ss_pred CCchH
Confidence 44444
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.98 E-value=0.0003 Score=52.26 Aligned_cols=82 Identities=11% Similarity=-0.080 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 018782 43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPV--DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120 (350)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 120 (350)
....|..++..+...|++++|+..|++.......+ ...++..+..++...|++++|+..+++..... +....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 35556667777777777777777777776543222 23466777777777777777777777776642 2223344444
Q ss_pred HHHHH
Q 018782 121 IHAFC 125 (350)
Q Consensus 121 ~~~~~ 125 (350)
...+.
T Consensus 113 a~i~~ 117 (168)
T CHL00033 113 AVICH 117 (168)
T ss_pred HHHHH
Confidence 44444
No 173
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.00063 Score=53.42 Aligned_cols=101 Identities=18% Similarity=0.186 Sum_probs=60.0
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHH
Q 018782 159 LCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRA 238 (350)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 238 (350)
+.+.+++++|+..|.+.++..+. |...|..-..+|.+.|.++.|++-.+..+..+. -...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHHHH
Confidence 34556666666666666665433 555555566666666666666666666655432 2345566666666666666666
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 239 TEVWESMEKRGFYPSVSTYSVMVHG 263 (350)
Q Consensus 239 ~~~~~~~~~~~~~p~~~~~~~ll~~ 263 (350)
.+.|++..+ +.|+..+|..-+..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 666666665 35665555554443
No 174
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=0.0016 Score=53.46 Aligned_cols=259 Identities=16% Similarity=0.096 Sum_probs=120.7
Q ss_pred HHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018782 18 HALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDE 97 (350)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 97 (350)
..+.+..++..|+..+.....-.|.++..|..-+..+...|+++++.--.+.-.+.... ....+...-+++...++..+
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence 34445556666777776666656666666666666666667777666555544432111 11222223333333333333
Q ss_pred HHHHHHH---------------HHhCC-CCCCHhhHHHH-HHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 018782 98 AHGMLRE---------------MRSIG-AEPDAFSYSIF-IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLC 160 (350)
Q Consensus 98 a~~~~~~---------------~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (350)
|.+.++. ..... -+|...++..+ ..++.-.++.++|.++--...+.. ..+....-.-..++.
T Consensus 136 A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~y 214 (486)
T KOG0550|consen 136 AEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLY 214 (486)
T ss_pred HHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccc
Confidence 3332221 11110 01222233222 234445566666666655555543 112222222223334
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHH-------------HHHHHHHHhcccCHHHHHHHHHHHHhC---CCCCChhHHHH
Q 018782 161 KNEKVEEAYQLLDEMIERGANPDEWS-------------YNAILAYHCDRAEVNMALRLITRMTKE---NVMPDRHTYNM 224 (350)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~-------------~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 224 (350)
-.++.+.+...|.+.++.+ |+... +..-..-..+.|++..|.+.+.+.+.. +..|+...|..
T Consensus 215 y~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~n 292 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGN 292 (486)
T ss_pred cccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHH
Confidence 4566666666666666553 22211 111112234556666666666665543 22334444555
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHH-HHHHHHhh-ccCcHHHHHHHHHHHHhC
Q 018782 225 VLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYS-VMVHGLCK-KKGKLEEACKYFEMMVDE 284 (350)
Q Consensus 225 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~ll~~~~~-~~~~~~~a~~~~~~~~~~ 284 (350)
...+..+.|+..+|+.-.++..+. |..-.. .+.++-|. ..+++++|.+-++...+.
T Consensus 293 ra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 293 RALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555556666666666666666543 222221 12222111 125666666666665544
No 175
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.95 E-value=1.3e-05 Score=40.42 Aligned_cols=29 Identities=38% Similarity=0.774 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcC
Q 018782 221 TYNMVLKLLVRVGRFDRATEVWESMEKRG 249 (350)
Q Consensus 221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 249 (350)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 176
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00019 Score=56.21 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=60.1
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 018782 52 RGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIH 131 (350)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 131 (350)
.-+.+.+++++|+..|.+.++..+. |...|..-..+|.+.|.++.|++-.+..+... +--..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 3345566666666666666665322 56666666666666666666666666665532 112346666666666666666
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHH
Q 018782 132 SVFRVLDSMKRYNLVPNVFTYNCII 156 (350)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~l~ 156 (350)
+|.+.|++.++. .|+-.+|-.=+
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHH
Confidence 666666666653 35555554433
No 177
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.93 E-value=0.00021 Score=53.47 Aligned_cols=87 Identities=15% Similarity=0.295 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----------------CCHhHHHHH
Q 018782 78 DILAHNSLLEAMCK-----AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEA----------------NDIHSVFRV 136 (350)
Q Consensus 78 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~ 136 (350)
+..+|..++..+.+ .|..+-....+..|.+.|+.-|..+|+.|+..+=+. .+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44455555554443 244555555555555555555556666555554321 123445555
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHccCC
Q 018782 137 LDSMKRYNLVPNVFTYNCIIRKLCKNEK 164 (350)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (350)
+++|...|+.||..++..+++.+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 5555555555555555555555555443
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.93 E-value=4.8e-05 Score=46.75 Aligned_cols=53 Identities=17% Similarity=0.255 Sum_probs=34.9
Q ss_pred HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782 21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
...|++++|.++|+.+....|.+...+..+..+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566677777777766666666666666777777777777777777666655
No 179
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.92 E-value=0.00049 Score=51.11 Aligned_cols=94 Identities=15% Similarity=0.023 Sum_probs=69.5
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTP---TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL 86 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 86 (350)
...+..+...+...|++++|...|+......+. ...++..+..++...|++++|+..+++..... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 445677778888899999999999998653222 34588999999999999999999999998763 33456666666
Q ss_pred HHHH-------hcCCHHHHHHHHHH
Q 018782 87 EAMC-------KAGNIDEAHGMLRE 104 (350)
Q Consensus 87 ~~~~-------~~~~~~~a~~~~~~ 104 (350)
..+. ..|+++.|+..+.+
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 6666 56666544444443
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.92 E-value=8.3e-05 Score=45.20 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=42.8
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782 264 LCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCT 323 (350)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 323 (350)
+... |++++|.+.|+++++.. |-+...+..+..++...|++++|...++++.+..|..
T Consensus 7 ~~~~-g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 7 LYQQ-GDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHC-THHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHc-CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4444 88888888888888776 5677788888888888888888888888877665544
No 181
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.90 E-value=2.1e-05 Score=39.60 Aligned_cols=29 Identities=45% Similarity=0.746 Sum_probs=15.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 018782 46 TYSILVRGLGDVGELSEARKLFDEMLERK 74 (350)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (350)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555543
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.87 E-value=0.0022 Score=44.11 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=41.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc----HHHHHHHHHHH
Q 018782 86 LEAMCKAGNIDEAHGMLREMRSIGAEPD--AFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN----VFTYNCIIRKL 159 (350)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~ 159 (350)
..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++..... |+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3344455555555555555555554332 1233344455555555555555555554431 21 11112222344
Q ss_pred HccCCHHHHHHHHHHHH
Q 018782 160 CKNEKVEEAYQLLDEMI 176 (350)
Q Consensus 160 ~~~g~~~~a~~~~~~~~ 176 (350)
...|+.++|+..+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 45555555555554433
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.82 E-value=0.00012 Score=44.54 Aligned_cols=56 Identities=23% Similarity=0.249 Sum_probs=32.3
Q ss_pred HHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782 18 HALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
..+...|++++|...|+.+....|.+...+..+..++...|++++|...|+++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555566666666666655555555566666666666666666666666655544
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.80 E-value=0.0034 Score=43.15 Aligned_cols=93 Identities=18% Similarity=0.091 Sum_probs=50.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHhhHHHHHHHH
Q 018782 49 ILVRGLGDVGELSEARKLFDEMLERKCPVD--ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAE--PDAFSYSIFIHAF 124 (350)
Q Consensus 49 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 124 (350)
.+..++-..|+.++|+.+|++....|+... ...+-.+...+...|++++|+.+++........ .+......+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 344555566666667777766666655433 234445556666666777777776666653211 0111222233445
Q ss_pred HhcCCHhHHHHHHHHHh
Q 018782 125 CEANDIHSVFRVLDSMK 141 (350)
Q Consensus 125 ~~~~~~~~a~~~~~~~~ 141 (350)
...|+.++|+..+-...
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55666666666665443
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.80 E-value=0.00014 Score=44.88 Aligned_cols=63 Identities=21% Similarity=0.152 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 018782 44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG-NIDEAHGMLREMRS 107 (350)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~ 107 (350)
+..|..+...+...|++++|+..|++.++.... +...|..+..++...| ++++|++.+++.++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 344445555555555555555555555544222 4444555555555555 45555555554443
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.79 E-value=0.0001 Score=45.24 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=46.0
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782 269 GKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCT 323 (350)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 323 (350)
|++++|+++|+++.... |.+...+..++.+|.+.|++++|..+++++....+..
T Consensus 5 ~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp THHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred cCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 89999999999998876 6688888899999999999999999999998877664
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.77 E-value=0.00019 Score=44.21 Aligned_cols=65 Identities=18% Similarity=0.172 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC-ChhHHHHHHHHhhccC
Q 018782 254 VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLG-FLDIIEILADKMERST 320 (350)
Q Consensus 254 ~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~ 320 (350)
...|..+-..+... |++++|+..|++.++.+ +.+...+..+..++...| ++++|.+.+++..+.+
T Consensus 3 a~~~~~~g~~~~~~-~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQ-GDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHT-THHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 34455555555544 67777777777776665 556666777777777776 5777777776665543
No 188
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.76 E-value=0.011 Score=45.49 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=23.4
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCCCCCh----hHHHHHHHHHHHcCCHhH
Q 018782 190 ILAYHCDRAEVNMALRLITRMTKENVMPDR----HTYNMVLKLLVRVGRFDR 237 (350)
Q Consensus 190 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~ 237 (350)
+...|.+.|.+..|..-++.+++.- |++ .....++.++.+.|..+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~y--p~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENY--PDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhCChHH
Confidence 3455566666666666666665541 222 233455556666665553
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.0035 Score=48.41 Aligned_cols=56 Identities=7% Similarity=-0.009 Sum_probs=27.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 018782 85 LLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSM 140 (350)
Q Consensus 85 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 140 (350)
++.++...+.+.-....+...++...+.++.....|++...+.||.+.|..+|++.
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v 238 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV 238 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34444444445555555555554443444444444555555555555555555544
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0043 Score=49.07 Aligned_cols=113 Identities=9% Similarity=0.046 Sum_probs=77.8
Q ss_pred HHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHhC
Q 018782 207 ITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKK--GKLEEACKYFEMMVDE 284 (350)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~--~~~~~a~~~~~~~~~~ 284 (350)
++.-...+ +-|...|-.|..+|...|+++.|..-|....+.. .++...+..+..++.... ....++..+|+++...
T Consensus 145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 33333433 3467788888888888888888888888877651 234444444444443332 3466778888888877
Q ss_pred CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCC
Q 018782 285 GIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSC 322 (350)
Q Consensus 285 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 322 (350)
+ +.|......|...+...|++.+|...|+.|.+..+.
T Consensus 223 D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 223 D-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred C-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 6 677788888888888888888888888888776443
No 191
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.68 E-value=0.014 Score=44.78 Aligned_cols=170 Identities=12% Similarity=0.114 Sum_probs=81.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhhCCC--CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 018782 120 FIHAFCEANDIHSVFRVLDSMKRYNL--VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDR 197 (350)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 197 (350)
....+...|++.+|...|+.+..... +-.....-.++.++.+.|+++.|...++.+.+..+.....-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34444555666666666666654310 1112334445566666666666666666666553322222222222222211
Q ss_pred -------------cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782 198 -------------AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGL 264 (350)
Q Consensus 198 -------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 264 (350)
+....|... +..++.-|-...-..+|...+..+.+. .-...+ .+..-|
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e~-~ia~~Y 151 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR---LAEHEL-YIARFY 151 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHHH-HHHHHH
T ss_pred HhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHHH-HHHHHH
Confidence 112223333 334444444445555555555555432 011111 233334
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHH
Q 018782 265 CKKKGKLEEACKYFEMMVDEGIPPY---SSTVEMLRNRLVGLGFLDIIE 310 (350)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~ 310 (350)
.+. |.+..|..-++.+++.- |-+ ......++.++.+.|..+.+.
T Consensus 152 ~~~-~~y~aA~~r~~~v~~~y-p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKR-GKYKAAIIRFQYVIENY-PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCT-T-HHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHc-ccHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 544 88888888888888763 222 345677788888888877443
No 192
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.0057 Score=48.43 Aligned_cols=102 Identities=12% Similarity=0.017 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---CHhHHHHHHHHHhhCCCCccHHHH
Q 018782 76 PVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN---DIHSVFRVLDSMKRYNLVPNVFTY 152 (350)
Q Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~ 152 (350)
|-|...|-.|...|...|+.+.|...|.+..+.. +++...+..+..++.... ...++..+|+++.... +.++.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 3377777778888888888888888887777652 345555555555544322 3556777777777654 3466666
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcC
Q 018782 153 NCIIRKLCKNEKVEEAYQLLDEMIERG 179 (350)
Q Consensus 153 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 179 (350)
..+...+...|++.+|...|+.|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 667777777888888888888877763
No 193
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.65 E-value=0.024 Score=46.59 Aligned_cols=111 Identities=24% Similarity=0.234 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 018782 186 SYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLC 265 (350)
Q Consensus 186 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 265 (350)
+.+.-+.-+...|+...|.++-.+. ++ |+...|...+.+++..++|++-.++... + -++..|...+..+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHH
Confidence 4455566677788888888776554 33 7888899999999999999988876543 1 13466788888776
Q ss_pred hccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782 266 KKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME 317 (350)
Q Consensus 266 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 317 (350)
.. |+..+|..++.+ +++ ..-+..|.+.|++.+|.+..-+..
T Consensus 249 ~~-~~~~eA~~yI~k-----~~~-----~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KY-GNKKEASKYIPK-----IPD-----EERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HC-CCHHHHHHHHHh-----CCh-----HHHHHHHHHCCCHHHHHHHHHHcC
Confidence 65 889999988887 222 344567788888888877655543
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.63 E-value=0.0021 Score=51.14 Aligned_cols=97 Identities=12% Similarity=0.019 Sum_probs=50.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHH
Q 018782 47 YSILVRGLGDVGELSEARKLFDEMLERKCPVD--ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGA--EPDAFSYSIFIH 122 (350)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 122 (350)
|...+..+.+.|++++|...|+.+.+..+... ..++..+..+|...|++++|...|+.+.+.-. +.....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444444445666666666666655422211 24555566666666666666666666654311 111223334445
Q ss_pred HHHhcCCHhHHHHHHHHHhhC
Q 018782 123 AFCEANDIHSVFRVLDSMKRY 143 (350)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~ 143 (350)
++...|+.++|..+|+.+.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555666666666666666554
No 195
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.63 E-value=0.028 Score=46.82 Aligned_cols=172 Identities=12% Similarity=0.112 Sum_probs=113.1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCH
Q 018782 41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERK---CPVDILAHNSLLEAMCK---AGNIDEAHGMLREMRSIGAEPDA 114 (350)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~ 114 (350)
-.++.+...++-.|....+++...++.+.+.... +.-....-.....++.+ .|+.++|++++..+......+++
T Consensus 138 ~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 138 LLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred hcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 4556666677778999999999999999987652 22233333345556667 88999999999886655567788
Q ss_pred hhHHHHHHHHHh---------cCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCH----HHHHHHH---HH-HHH
Q 018782 115 FSYSIFIHAFCE---------ANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKV----EEAYQLL---DE-MIE 177 (350)
Q Consensus 115 ~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~---~~-~~~ 177 (350)
.++..+...|-. ....++|+..|.+.-+.. |+.+.--.++..+.-.|.. .+..++- .. +.+
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~ 295 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGR 295 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHh
Confidence 888888777642 224778888888775532 5544333333333333332 1222222 11 112
Q ss_pred cC---CCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC
Q 018782 178 RG---ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN 214 (350)
Q Consensus 178 ~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 214 (350)
+| ...+-+.+..++.++.-.|+.++|.+..+.+.+..
T Consensus 296 kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 296 KGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred hccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 22 33466778888999999999999999999998863
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.013 Score=45.41 Aligned_cols=133 Identities=14% Similarity=0.170 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH---
Q 018782 45 KTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFI--- 121 (350)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--- 121 (350)
.+.+.++.++...|.+.-...++.+.++...+.++.....|++...+.|+.+.|...|++..+..-..|..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34567788888899999999999999998878889999999999999999999999999887654344444444443
Q ss_pred --HHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 018782 122 --HAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER 178 (350)
Q Consensus 122 --~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (350)
..|.-.+++..|...+.++.... +.++...|.-.-+..-.|+..+|.+.++.+.+.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23445567777777777776654 335555555445555567888888888888776
No 197
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.05 Score=48.61 Aligned_cols=304 Identities=14% Similarity=0.098 Sum_probs=165.6
Q ss_pred CCCCCCCcCHhhHHH-----HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHhc
Q 018782 1 MVEFGIKPSIYDLDQ-----LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGE--LSEARKLFDEMLER 73 (350)
Q Consensus 1 m~~~g~~p~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~ 73 (350)
|.+-|++.+..-|.. +++-+...+.+..|+++-..+.........+|......+.+..+ -+++++.+++=.+.
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 457788888888865 56677788999999999988865333336788888888876632 22333333332222
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC-----
Q 018782 74 KCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAE----PDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN----- 144 (350)
Q Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----- 144 (350)
... ....|..+.+-....|+.+.|..+++.=...+.. .+..-+...+.-+.+.||.+....++-.+.+.-
T Consensus 503 ~~~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l 581 (829)
T KOG2280|consen 503 KLT-PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSL 581 (829)
T ss_pred cCC-CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 122 4456777888788899999998887653322211 122234555666777788777777666554321
Q ss_pred ------CCccHHHHHHHHH---------HHHccCCHHHHHHHH-HHHHH----cCCCCCHHHHHHHHHHHhcccCHH---
Q 018782 145 ------LVPNVFTYNCIIR---------KLCKNEKVEEAYQLL-DEMIE----RGANPDEWSYNAILAYHCDRAEVN--- 201 (350)
Q Consensus 145 ------~~~~~~~~~~l~~---------~~~~~g~~~~a~~~~-~~~~~----~~~~~~~~~~~~ll~~~~~~~~~~--- 201 (350)
.+.....|.-+++ .|-...+...+-.+. +.... .+..|+ ......++.+.....
T Consensus 582 ~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ 658 (829)
T KOG2280|consen 582 FMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEA 658 (829)
T ss_pred HHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHH
Confidence 1111122222221 111111111111111 11000 111222 222233333332211
Q ss_pred -------HHHHHHHHHHhC-CCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHH
Q 018782 202 -------MALRLITRMTKE-NVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEE 273 (350)
Q Consensus 202 -------~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 273 (350)
+-+.+.+.+... +.....-+.+--+.-+...|+-.+|.++-.+++ .||-..|..-+.++... +++++
T Consensus 659 ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~-~kwee 733 (829)
T KOG2280|consen 659 KALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADI-KKWEE 733 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhh-hhHHH
Confidence 111222222211 222333445555666677788888888777765 46777777777777665 77766
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782 274 ACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 274 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
..++-+... ++.-|..++.+|.+.|+.++|.+++.+....
T Consensus 734 LekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l 773 (829)
T KOG2280|consen 734 LEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL 773 (829)
T ss_pred HHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh
Confidence 655544332 2445666777777788888777777766543
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.52 E-value=0.0033 Score=50.03 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHhhccCcHHHHHHHHHHHHhCC--CCCCHHHHHH
Q 018782 222 YNMVLKLLVRVGRFDRATEVWESMEKRGFYPSV----STYSVMVHGLCKKKGKLEEACKYFEMMVDEG--IPPYSSTVEM 295 (350)
Q Consensus 222 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 295 (350)
|...+..+.+.|++++|...|+.+.+. .|+. ..+..+...|... |++++|...|+.+.... -+..+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~-g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNK-GKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 444333334556677777667666654 2332 2333344444444 67777777777766442 1223445555
Q ss_pred HHHHHHcCCChhHHHHHHHHhhccCCCcH
Q 018782 296 LRNRLVGLGFLDIIEILADKMERSTSCTI 324 (350)
Q Consensus 296 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 324 (350)
++..+...|+.++|.++++++.+..|.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 56666667777777777776666544443
No 199
>PRK15331 chaperone protein SicA; Provisional
Probab=97.47 E-value=0.0021 Score=46.21 Aligned_cols=95 Identities=8% Similarity=-0.065 Sum_probs=75.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 018782 47 YSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE 126 (350)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (350)
......-+...|++++|..+|+-+.-.++- +..-|..|..++-..+++++|+..|......+. -|+..+.....++..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHH
Confidence 444555566789999999999988876544 677788888889999999999999988876543 455556678889999
Q ss_pred cCCHhHHHHHHHHHhhC
Q 018782 127 ANDIHSVFRVLDSMKRY 143 (350)
Q Consensus 127 ~~~~~~a~~~~~~~~~~ 143 (350)
.|+.+.|...|+.....
T Consensus 118 l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 118 MRKAAKARQCFELVNER 134 (165)
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 99999999999988874
No 200
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.47 E-value=0.047 Score=45.48 Aligned_cols=98 Identities=13% Similarity=0.143 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHhhCC---CCccHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 018782 115 FSYSIFIHAFCEANDIHSVFRVLDSMKRYN---LVPNVFTYNCIIRKLCK---NEKVEEAYQLLDEMIERGANPDEWSYN 188 (350)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~ 188 (350)
.+...++-+|....+++..+++++.+.... +..+...-.....++.+ .|+.++|.+++..+......+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344566667999999999999999997752 12233333345556666 899999999999976666677888888
Q ss_pred HHHHHHhc---------ccCHHHHHHHHHHHHh
Q 018782 189 AILAYHCD---------RAEVNMALRLITRMTK 212 (350)
Q Consensus 189 ~ll~~~~~---------~~~~~~a~~~~~~~~~ 212 (350)
.+.+.|-. ....++|...|.+.-+
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 87776642 1235566666666554
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.46 E-value=0.0075 Score=43.55 Aligned_cols=56 Identities=23% Similarity=0.293 Sum_probs=24.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHH
Q 018782 154 CIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRM 210 (350)
Q Consensus 154 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 210 (350)
.++..+...|++++|..+++.+....+. +...|..+|.++...|+...|.+.|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3334444444444444444444444322 4444444444444444444444444443
No 202
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.45 E-value=0.0064 Score=50.18 Aligned_cols=133 Identities=12% Similarity=0.033 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHh----CCCC-CChhHHHHHHHHHHHcCCHhHHHHHHHHHHh----cCCC-CCH
Q 018782 185 WSYNAILAYHCDRAEVNMALRLITRMTK----ENVM-PDRHTYNMVLKLLVRVGRFDRATEVWESMEK----RGFY-PSV 254 (350)
Q Consensus 185 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-p~~ 254 (350)
..|..|...|.-.|+++.|+...+.-.. .|-+ .....+..+..++.-.|+++.|.+.|+.... .|-+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566777777778889988876655322 1211 1234677788888889999999998876542 2211 122
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHH----hC-CCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782 255 STYSVMVHGLCKKKGKLEEACKYFEMMV----DE-GIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER 318 (350)
Q Consensus 255 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~----~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 318 (350)
.+..++-..|... ..++.|+.++.+-. +. +..-....+.+|..+|...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll-~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLL-KEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3344555566544 68888888887632 21 1233567888999999999999999988776543
No 203
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.41 E-value=0.053 Score=44.72 Aligned_cols=283 Identities=14% Similarity=0.129 Sum_probs=165.1
Q ss_pred ccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcCCHHH
Q 018782 22 KRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGL--GDVGELSEARKLFDEMLERKCPVDIL--AHNSLLEAMCKAGNIDE 97 (350)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 97 (350)
-.|+-..|.++-.+..+....+......++.+- .-.|+++.|.+-|+.|... |... -...|.-...+.|..+.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 356667777776665544444444444444433 3468888888888888763 1211 12223333446778888
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC-CCccHHH--HHHHHHHH---HccCCHHHHHHH
Q 018782 98 AHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN-LVPNVFT--YNCIIRKL---CKNEKVEEAYQL 171 (350)
Q Consensus 98 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~~g~~~~a~~~ 171 (350)
|..+-+..-..- +.-...+...+...+..|+|+.|+++++.-.... +.++..- -..|+.+- .-..+...|...
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 887777776542 2234567778888888888888888887664422 2333221 11222111 112345555555
Q ss_pred HHHHHHcCCCCCHH-HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc-C
Q 018782 172 LDEMIERGANPDEW-SYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR-G 249 (350)
Q Consensus 172 ~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~ 249 (350)
-.+..+. .||.. .-.....++.+.|+..++-.+++.+-+..+.|+ .+ ..|.+...-+.+..-++..... .
T Consensus 252 A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia----~lY~~ar~gdta~dRlkRa~~L~s 323 (531)
T COG3898 252 ALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IA----LLYVRARSGDTALDRLKRAKKLES 323 (531)
T ss_pred HHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HH----HHHHHhcCCCcHHHHHHHHHHHHh
Confidence 5554443 44432 233345678888999999999999888755554 22 2333333333444444443321 2
Q ss_pred CCCCHH-HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-CCChhHHHHHHHHhhcc
Q 018782 250 FYPSVS-TYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG-LGFLDIIEILADKMERS 319 (350)
Q Consensus 250 ~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 319 (350)
++||.. .-..+..+-. ..|++..|..--+..... .|....|..+.+.-.. .|+-.++..++.+..+.
T Consensus 324 lk~nnaes~~~va~aAl-da~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 324 LKPNNAESSLAVAEAAL-DAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cCccchHHHHHHHHHHH-hccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 345543 3344444433 348888888777766554 5778888777776554 48999999888887653
No 204
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.41 E-value=0.0013 Score=47.50 Aligned_cols=73 Identities=26% Similarity=0.364 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHhhHH
Q 018782 45 KTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMR-----SIGAEPDAFSYS 118 (350)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 118 (350)
.+...++..+...|+++.|..+.+.+.... |.+...|..+|.++...|+...|.+.|+.+. +.|+.|+..+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 466777788888999999999999988874 4488899999999999999999999998875 358888876543
No 205
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.41 E-value=0.0011 Score=41.20 Aligned_cols=56 Identities=14% Similarity=0.011 Sum_probs=40.6
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHH
Q 018782 269 GKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQ 325 (350)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 325 (350)
+++++|.++++.+...+ |.++..+.....++.+.|++++|.+.+++..+..+..+.
T Consensus 9 ~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 9 EDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred CCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 77777777777777775 566777777777777777777777777777766665544
No 206
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.41 E-value=0.059 Score=47.90 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 018782 183 DEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESME 246 (350)
Q Consensus 183 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 246 (350)
+....-.+...+.+.|.-++|.+.+-+- +. |. ..+..|...++|.+|.++-+...
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-pk-----aAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRR---SL-PK-----AAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhc---cC-cH-----HHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455666667777777777777665332 21 22 34566777777877777766543
No 207
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.35 E-value=0.071 Score=44.89 Aligned_cols=83 Identities=12% Similarity=0.132 Sum_probs=56.8
Q ss_pred HhHHHHHHHHHHhcCCCCCHH----HHHHHHHH-HhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHH
Q 018782 235 FDRATEVWESMEKRGFYPSVS----TYSVMVHG-LCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDII 309 (350)
Q Consensus 235 ~~~a~~~~~~~~~~~~~p~~~----~~~~ll~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 309 (350)
+..-..+-+-+.+.|+.|-.. .-|.+-.+ |....|++.++...-..+.+ +.|++.+|+.++-+.....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence 333334444444556665432 23333222 22234888888887777766 468999999999999999999999
Q ss_pred HHHHHHhhcc
Q 018782 310 EILADKMERS 319 (350)
Q Consensus 310 ~~~~~~~~~~ 319 (350)
..++..++..
T Consensus 515 ~~~l~~LP~n 524 (549)
T PF07079_consen 515 WEYLQKLPPN 524 (549)
T ss_pred HHHHHhCCCc
Confidence 9999998764
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.30 E-value=0.0022 Score=39.85 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=28.6
Q ss_pred HHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782 19 ALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
.+.+.++++.|.++++.+..-.|.++..+.....++...|++++|.+.|++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555555555555554444445555555555555555555555555555543
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=97.30 E-value=0.019 Score=41.41 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=56.8
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCC
Q 018782 226 LKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGF 305 (350)
Q Consensus 226 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 305 (350)
..-+...|++++|..+|+-+.-.+. ...-|..=+.+++...+++++|+..|......+ +.|+..+.....++...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 3445567777777777777765422 222333333344444577777777777766554 3455556667777777777
Q ss_pred hhHHHHHHHHhhcc
Q 018782 306 LDIIEILADKMERS 319 (350)
Q Consensus 306 ~~~a~~~~~~~~~~ 319 (350)
.+.|+..|+.....
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777776653
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.22 E-value=0.09 Score=43.45 Aligned_cols=267 Identities=18% Similarity=0.190 Sum_probs=171.9
Q ss_pred cCHhhHHHHHHHH--HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782 8 PSIYDLDQLLHAL--CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSL 85 (350)
Q Consensus 8 p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (350)
.|..-+-.++.+- .-.|+++.|.+-|+.|...-....--...|.-..-+.|..+.|.++-++.-..-.. -...+...
T Consensus 116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~At 194 (531)
T COG3898 116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARAT 194 (531)
T ss_pred ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHH
Confidence 3444455555433 45899999999999997521111112233333345679999999998887766333 56778889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-CCCCHh--hHHHHHHHHH---hcCCHhHHHHHHHHHhhCCCCccHHH-HHHHHHH
Q 018782 86 LEAMCKAGNIDEAHGMLREMRSIG-AEPDAF--SYSIFIHAFC---EANDIHSVFRVLDSMKRYNLVPNVFT-YNCIIRK 158 (350)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~ 158 (350)
+...+..|+|+.|+++++.-+... +.++.. .-..|+.+-. -..+...|...-.+..+ +.|+..- -.....+
T Consensus 195 Le~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAra 272 (531)
T COG3898 195 LEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARA 272 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHH
Confidence 999999999999999999877543 344432 1222332211 12345556555555544 3455332 2234578
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHHcCCHh
Q 018782 159 LCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE-NVMP-DRHTYNMVLKLLVRVGRFD 236 (350)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~ 236 (350)
+.+.|+..++-.+++.+-+..+.|+. +. +..+.+.|+.. ..-++..... ..+| +......+..+-...|++.
T Consensus 273 lf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 273 LFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 89999999999999999998655543 32 22344556533 3333332211 1233 4566667788888999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782 237 RATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG 285 (350)
Q Consensus 237 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 285 (350)
.|..--+..... .|....|..|...-....|+-.++..++-+....-
T Consensus 347 ~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 347 AARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 999888877764 67777777666554445599999999999887653
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.19 E-value=0.05 Score=39.99 Aligned_cols=127 Identities=11% Similarity=0.058 Sum_probs=62.0
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 018782 112 PDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-PDEWSYNAI 190 (350)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l 190 (350)
|+...-..|..+..+.|+..+|...|++...--+.-|....-.+.++....+++..|...++++-+.+.. -++.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 4444444555555666666666666665554333344455555555555556666666666555543210 011223334
Q ss_pred HHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHH
Q 018782 191 LAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATE 240 (350)
Q Consensus 191 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 240 (350)
.+.+...|.+..|+..|+..... -|+...-......+.+.|+.+++..
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555555555555555553 2333333333334444554444433
No 212
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.18 E-value=0.11 Score=43.73 Aligned_cols=68 Identities=13% Similarity=0.264 Sum_probs=59.2
Q ss_pred CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782 6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
-|-|..+|..|++-+..+|..++..+.++++...+|--+.+|...+..-...+++..++.+|.+-+..
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 45678889999999999999999999999999888888888988888888888888888888876654
No 213
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.13 E-value=0.06 Score=39.60 Aligned_cols=133 Identities=14% Similarity=0.046 Sum_probs=96.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCC-CccHHHHH
Q 018782 75 CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNL-VPNVFTYN 153 (350)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 153 (350)
..|+......|..+..+.|+..+|...|++....-+--|....-.+..+....++...+...++++-+... .-+..+.-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 35677777788999999999999999999998765566777788888889999999999999999866431 11233445
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHH
Q 018782 154 CIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITR 209 (350)
Q Consensus 154 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 209 (350)
.+.+.+...|.+..|+.-|+.....- |+...-......+.+.|+.+++..-+..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 66788899999999999999988763 4443333333444556655555443333
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.08 E-value=0.017 Score=40.16 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHH-hCCCCCCHHHHHHHHH
Q 018782 250 FYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMV-DEGIPPYSSTVEMLRN 298 (350)
Q Consensus 250 ~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~ 298 (350)
..|+..+..+++.+|+.. |++..|+++++... ..+++.+..+|..|++
T Consensus 48 l~Pt~~lL~AIv~sf~~n-~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYN-GDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344555555555554433 45555555554443 2234444444444444
No 215
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.05 E-value=0.019 Score=39.91 Aligned_cols=83 Identities=8% Similarity=0.006 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHhcccCHHHHHHHHHHHHh---------------CCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782 183 DEWSYNAILAYHCDRAEVNMALRLITRMTK---------------ENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEK 247 (350)
Q Consensus 183 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 247 (350)
|..++..++.++++.|+.+....+++..-. ....|+..+..+++.+|+..|++..|.++.+.+.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 467888999999999999999998877521 12457888999999999999999999999999875
Q ss_pred -cCCCCCHHHHHHHHHHHh
Q 018782 248 -RGFYPSVSTYSVMVHGLC 265 (350)
Q Consensus 248 -~~~~p~~~~~~~ll~~~~ 265 (350)
.++..+...|..|+.-..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 467777788888876533
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.03 E-value=0.0023 Score=40.40 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=10.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHH
Q 018782 46 TYSILVRGLGDVGELSEARKLFDEM 70 (350)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~~ 70 (350)
+++.+..+|...|++++|+..|++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444444444444444443
No 217
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.98 E-value=0.18 Score=42.62 Aligned_cols=143 Identities=11% Similarity=0.202 Sum_probs=88.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHhhCC-CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHH
Q 018782 116 SYSIFIHAFCEANDIHSVFRVLDSMKRYN-LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWS-YNAILAY 193 (350)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~ 193 (350)
.|...+..-.+...++.|..+|-++.+.| +.+++..+++++..++ .|++.-|..+|+--...- ||... ....+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHHHHH
Confidence 45556666666677777788887777776 4566777777776555 456777777777655442 23333 3345555
Q ss_pred HhcccCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782 194 HCDRAEVNMALRLITRMTKENVMPD--RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGL 264 (350)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 264 (350)
+.+.++-..|..+|+..+.. +..+ ...|..++.--..-|++..+..+=+.+.+. .|...+.....+.|
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 66777777777777755443 1112 356777777777777777777776666653 45444444444433
No 218
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.98 E-value=0.0025 Score=40.30 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=49.6
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhh---cCC---C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKH---EFT---P-TVKTYSILVRGLGDVGELSEARKLFDEMLE 72 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 72 (350)
..+|+.+...+...|++++|+..|++... ..+ + ...++..+..++...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34678888999999999999999999753 122 2 256788888999999999999999988654
No 219
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.94 E-value=0.026 Score=46.79 Aligned_cols=271 Identities=12% Similarity=0.082 Sum_probs=159.2
Q ss_pred hhHHHHH--HHHHccCChHHHHHHHHHhhhcCC----CCHHHHHHHHHHHhccCCHHHHHHHHHHH--Hhc--CCC-CCH
Q 018782 11 YDLDQLL--HALCKRKHVKVAHQFFDNAKHEFT----PTVKTYSILVRGLGDVGELSEARKLFDEM--LER--KCP-VDI 79 (350)
Q Consensus 11 ~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~~~--~~~-~~~ 79 (350)
.++...+ .-+|+.|+......+|+...+... .-..+|..|..+|.-.+++++|+++-..= ..+ |-+ -..
T Consensus 16 SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEA 95 (639)
T KOG1130|consen 16 SCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEA 95 (639)
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccc
Confidence 3444333 467899999999999999876323 33456777888888888999998765431 111 100 011
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH----HHhCCCC-CCHhhHHHHHHHHHhcCC--------------------HhHHH
Q 018782 80 LAHNSLLEAMCKAGNIDEAHGMLRE----MRSIGAE-PDAFSYSIFIHAFCEAND--------------------IHSVF 134 (350)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~ 134 (350)
.+-..|...+--.|.+++|+-.-.+ ..+.|-. .....+..+...|...|. ++.|.
T Consensus 96 KssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av 175 (639)
T KOG1130|consen 96 KSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAV 175 (639)
T ss_pred cccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHH
Confidence 2222344444455666666543222 2222211 122344456666655442 33444
Q ss_pred HHHHHHh----hCCC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHH----cCC-CCCHHHHHHHHHHHhcccCHHHHH
Q 018782 135 RVLDSMK----RYNL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIE----RGA-NPDEWSYNAILAYHCDRAEVNMAL 204 (350)
Q Consensus 135 ~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~ll~~~~~~~~~~~a~ 204 (350)
++|..-. +.|- -.-...|..|...|.-.|+++.|+...+.-.. .|- ......+..+..++.-.|+++.|.
T Consensus 176 ~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ 255 (639)
T KOG1130|consen 176 KFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAI 255 (639)
T ss_pred HHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHH
Confidence 5544321 1110 01234566667777778899999877654322 221 123456777888888899999999
Q ss_pred HHHHHHHhC----CC-CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHh----c-CCCCCHHHHHHHHHHHhhccCcHHHH
Q 018782 205 RLITRMTKE----NV-MPDRHTYNMVLKLLVRVGRFDRATEVWESMEK----R-GFYPSVSTYSVMVHGLCKKKGKLEEA 274 (350)
Q Consensus 205 ~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~p~~~~~~~ll~~~~~~~~~~~~a 274 (350)
+.++..... |- .....+..+|...|.-..++++|+.++.+-.. . ...-....++++-.+|... |..++|
T Consensus 256 ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al-g~h~kA 334 (639)
T KOG1130|consen 256 EHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL-GEHRKA 334 (639)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-hhHHHH
Confidence 988775332 21 12334556778888888889999888765331 1 1123456778888887766 888888
Q ss_pred HHHHHHHH
Q 018782 275 CKYFEMMV 282 (350)
Q Consensus 275 ~~~~~~~~ 282 (350)
+.+...-.
T Consensus 335 l~fae~hl 342 (639)
T KOG1130|consen 335 LYFAELHL 342 (639)
T ss_pred HHHHHHHH
Confidence 88777654
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.91 E-value=0.041 Score=46.61 Aligned_cols=68 Identities=18% Similarity=-0.024 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 018782 40 FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDI---LAHNSLLEAMCKAGNIDEAHGMLREMRSI 108 (350)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 108 (350)
.|.+...++.+..+|...|++++|+..|++.++.+.. +. .+|..+..+|...|+.++|+..+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566788888999999999999999999988876433 22 35888888999999999999999988875
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.91 E-value=0.2 Score=43.97 Aligned_cols=177 Identities=12% Similarity=0.053 Sum_probs=106.6
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCH------HHHHHHHHHHHh----cCCHHHH
Q 018782 29 AHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDI------LAHNSLLEAMCK----AGNIDEA 98 (350)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a 98 (350)
..-+|.-+..-.||. +..++....=.|+-+.+++.+.+..+.+--..+ -.|+..+..++. ....+.|
T Consensus 176 G~G~f~L~lSlLPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 176 GFGLFNLVLSLLPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHHhCCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 345555555555554 456677777778888888888776553211121 123333333332 4567888
Q ss_pred HHHHHHHHhCCCCCCHhhHH-HHHHHHHhcCCHhHHHHHHHHHhhCC--C-CccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 018782 99 HGMLREMRSIGAEPDAFSYS-IFIHAFCEANDIHSVFRVLDSMKRYN--L-VPNVFTYNCIIRKLCKNEKVEEAYQLLDE 174 (350)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 174 (350)
.+++..+.+. -|+...|. .-.+.+...|++++|++.|+...... . ......+--+.-.+.-.+++++|.+.|..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 8888888875 35554443 33456677888888888888654311 1 11233444555667778888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHH-hcccCH-------HHHHHHHHHHH
Q 018782 175 MIERGANPDEWSYNAILAYH-CDRAEV-------NMALRLITRMT 211 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~ll~~~-~~~~~~-------~~a~~~~~~~~ 211 (350)
+.+.+.. +..+|.-+..+| ...++. ++|.++|.++.
T Consensus 331 L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 331 LLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 8876432 444444444333 345555 77888887754
No 222
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.87 E-value=0.063 Score=45.58 Aligned_cols=68 Identities=18% Similarity=-0.014 Sum_probs=59.6
Q ss_pred CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782 6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTV---KTYSILVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
-+.+...++.+..+|...|++++|+..|++.....|.+. .+|..+..+|...|+.++|+..+++.++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677889999999999999999999999877656555 45999999999999999999999999886
No 223
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.83 E-value=0.076 Score=45.92 Aligned_cols=153 Identities=15% Similarity=0.122 Sum_probs=66.9
Q ss_pred HccCChHHHHHHHH--HhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 018782 21 CKRKHVKVAHQFFD--NAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEA 98 (350)
Q Consensus 21 ~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 98 (350)
.-.++++.+.++.+ .+...+| ....+.+++.+-+.|-.+.|+++.++-.. -.....+.|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHH
Confidence 33555555555443 1222222 33355555566666666666655433211 12334455565555
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 018782 99 HGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER 178 (350)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (350)
.++.+.. .+...|..|.....+.|+++-|...|.+..+ |..|+-.|.-.|+.+...++.+.....
T Consensus 338 ~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 338 LEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 5443332 2445566666666666666666665554432 234444455555555555555544443
Q ss_pred CCCCCHHHHHHHHHHHhcccCHHHHHHHHH
Q 018782 179 GANPDEWSYNAILAYHCDRAEVNMALRLIT 208 (350)
Q Consensus 179 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 208 (350)
| -++....++.-.|+.+++.+++.
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 2 13333333444455555555443
No 224
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.24 Score=41.33 Aligned_cols=88 Identities=10% Similarity=-0.004 Sum_probs=41.7
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhC---CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHH
Q 018782 121 IHAFCEANDIHSVFRVLDSMKRY---NLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWS---YNAILAYH 194 (350)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~ 194 (350)
..-..+.|++..|...|.+.+.. +..|+...|.....+..+.|+.++|+.-.+..... |..- +..-..++
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~ 331 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCH 331 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHH
Confidence 33444555555555555555432 22334444555555555555555555555555443 2221 11112233
Q ss_pred hcccCHHHHHHHHHHHHh
Q 018782 195 CDRAEVNMALRLITRMTK 212 (350)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~ 212 (350)
...++|++|.+-++...+
T Consensus 332 l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345555555555555444
No 225
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.054 Score=44.89 Aligned_cols=138 Identities=13% Similarity=0.071 Sum_probs=67.4
Q ss_pred HHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018782 18 HALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDE 97 (350)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 97 (350)
..+.+.|++..|...|+++..-... .+.-+.++..... . .-..+++.+..++.+.+++..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~------------~~~~~~ee~~~~~-~-------~k~~~~lNlA~c~lKl~~~~~ 275 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEY------------RRSFDEEEQKKAE-A-------LKLACHLNLAACYLKLKEYKE 275 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhc------------cccCCHHHHHHHH-H-------HHHHHhhHHHHHHHhhhhHHH
Confidence 4677888899888888886431110 0000001111110 0 122344555556666666666
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHH-HHHHHHHHHH
Q 018782 98 AHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVE-EAYQLLDEMI 176 (350)
Q Consensus 98 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~ 176 (350)
|++.-...+..+ ++|.....--..++...|+++.|...|+++.+.. |.|..+-+.++.+--+..... ...++|..|.
T Consensus 276 Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 276 AIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666666553 3445455555556666666666666666665542 223333333333333333332 2345555554
Q ss_pred H
Q 018782 177 E 177 (350)
Q Consensus 177 ~ 177 (350)
.
T Consensus 354 ~ 354 (397)
T KOG0543|consen 354 A 354 (397)
T ss_pred h
Confidence 3
No 226
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.74 E-value=0.25 Score=40.76 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=78.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 018782 151 TYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLV 230 (350)
Q Consensus 151 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (350)
+.+..+.-+...|+...|..+-.+.. .|+...|-..+.+++..++|++-.++... +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44555667778888888877765552 46888999999999999999987776432 123477889999999
Q ss_pred HcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 018782 231 RVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEM 280 (350)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 280 (350)
+.|+..+|..+...+ |+ ..-+..|... |++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~------~~----~~rv~~y~~~-~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI------PD----EERVEMYLKC-GDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC------Ch----HHHHHHHHHC-CCHHHHHHHHHH
Confidence 999999999888772 22 2333344433 888888776443
No 227
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.24 Score=39.54 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=90.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 018782 50 LVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAND 129 (350)
Q Consensus 50 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 129 (350)
-.......|++.+|..+|+........ +...-..++.++...|+.+.|..++..+...--.........-+..+.+...
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 344556778888888888887766433 4566667778888888888888888877543222222222334555555566
Q ss_pred HhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccc
Q 018782 130 IHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER--GANPDEWSYNAILAYHCDRA 198 (350)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~ 198 (350)
..+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.++ +.. |...-..++..+.-.|
T Consensus 219 ~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 219 TPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 55555555555443 236666667777888888888888777666654 222 4555666666665555
No 228
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.12 Score=41.88 Aligned_cols=152 Identities=11% Similarity=0.068 Sum_probs=84.0
Q ss_pred ccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 018782 22 KRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER---KCPVDILAHNSLLEAMCKAGNIDEA 98 (350)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 98 (350)
.+|++.+|-..++++.+..|.+.-.+..-=+++.-.|+.......++++... ++|..........-++...|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3456666666666666666666666666666666677777666666666543 2222233333344455566777777
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC---CCCccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 018782 99 HGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY---NLVPNVFTYNCIIRKLCKNEKVEEAYQLLDE 174 (350)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 174 (350)
++.-++..+.+ +-|...-.++...+-..|++.++.++..+-... +--.-.+-|-...-.+...+.++.|+++|+.
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 77777766653 334445555556666666666666665443221 0000111122222334455677777777764
No 229
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.63 E-value=0.041 Score=47.49 Aligned_cols=133 Identities=18% Similarity=0.169 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018782 11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMC 90 (350)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (350)
...+.++..+.+.|-.+.|+++-..-. .-.....+.|+++.|.++.++. .+...|..|.....
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~-----------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTDPD-----------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS-HH-----------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCChH-----------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 347788888888999998888744322 3355667899999998876543 37789999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHH
Q 018782 91 KAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQ 170 (350)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 170 (350)
..|+++.|.+.|.+..+ |..|+-.|.-.|+.+...++.+.....| -++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998743 6678888888999999988888887766 24444555666788888887
Q ss_pred HHHHH
Q 018782 171 LLDEM 175 (350)
Q Consensus 171 ~~~~~ 175 (350)
++.+.
T Consensus 424 lL~~~ 428 (443)
T PF04053_consen 424 LLIET 428 (443)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 77553
No 230
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.60 E-value=0.46 Score=42.25 Aligned_cols=95 Identities=15% Similarity=0.058 Sum_probs=49.1
Q ss_pred CCcCHhhHHHHHHHHHccCChHHHHHHHHH---------hhhcCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHhcC
Q 018782 6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDN---------AKHEFTPTVKTYSILVRGLGDVGE--LSEARKLFDEMLERK 74 (350)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~ 74 (350)
+.|.+..+.+-+..+...|.+++|.++--- +.. ...++-.++..=.+|.+..+ +-+...-+++++++|
T Consensus 552 i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~-~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg 630 (1081)
T KOG1538|consen 552 ISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAM-EALEALDFETARKAYIRVRDLRYLELISELEERKKRG 630 (1081)
T ss_pred eecccccccccchhhhhccchhhhhcccccceecchHHHHHH-HHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence 344455555666667778888877654211 100 01122223333445544433 223334445566666
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018782 75 CPVDILAHNSLLEAMCKAGNIDEAHGMLRE 104 (350)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 104 (350)
-.|+... +...++-.|.+.+|-++|.+
T Consensus 631 e~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 631 ETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred CCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 6566543 44556667777777777654
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.59 E-value=0.44 Score=41.90 Aligned_cols=154 Identities=16% Similarity=0.164 Sum_probs=83.7
Q ss_pred HhcCCHhHHHHHHHHHhhCC-CCcc-----HHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHH
Q 018782 125 CEANDIHSVFRVLDSMKRYN-LVPN-----VFTYNCIIRKLCK----NEKVEEAYQLLDEMIERGANPDEWSYNAI-LAY 193 (350)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~ 193 (350)
.-.||-+.+++.+....+.+ +... .-.|...+..++. ....+.|.+++..+.+. -|+...|... .+.
T Consensus 199 GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~ 276 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRL 276 (468)
T ss_pred CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 34567777777766654432 2111 1123333333332 34556777777777765 4455444433 234
Q ss_pred HhcccCHHHHHHHHHHHHhCC---CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCc
Q 018782 194 HCDRAEVNMALRLITRMTKEN---VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGK 270 (350)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 270 (350)
+...|+++.|.+.|+...... .+.....+--+..++.-.++|++|.+.|..+.+.. ..+...|..+..++....|+
T Consensus 277 ~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~ 355 (468)
T PF10300_consen 277 ERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGR 355 (468)
T ss_pred HHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhcc
Confidence 456677777777777654311 11122334445566667777777777777777642 22344555555444444466
Q ss_pred H-------HHHHHHHHHH
Q 018782 271 L-------EEACKYFEMM 281 (350)
Q Consensus 271 ~-------~~a~~~~~~~ 281 (350)
. ++|.++|.+.
T Consensus 356 ~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 356 EEEAKEHKKEAEELFRKV 373 (468)
T ss_pred chhhhhhHHHHHHHHHHH
Confidence 6 6777777665
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.59 E-value=0.25 Score=38.62 Aligned_cols=181 Identities=12% Similarity=0.112 Sum_probs=98.9
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCC--CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc---
Q 018782 122 HAFCEANDIHSVFRVLDSMKRYN--LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD--- 196 (350)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--- 196 (350)
..-.+.|++++|.+.|+.+.... -+-...+--.++.++.+.++++.|....++..+..+......|...|.+.+.
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~ 121 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhcc
Confidence 33456688888888888886542 1123445555667777888888888888888776544444445555554441
Q ss_pred ----ccCHH---HHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccC
Q 018782 197 ----RAEVN---MALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKG 269 (350)
Q Consensus 197 ----~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 269 (350)
..|.. .|..-|++++.. . ||+ .-...|..-...+.+. ..-+...|.-|....|
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~r-y-PnS-------------~Ya~dA~~~i~~~~d~-----LA~~Em~IaryY~kr~ 181 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQR-Y-PNS-------------RYAPDAKARIVKLNDA-----LAGHEMAIARYYLKRG 181 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHH-C-CCC-------------cchhhHHHHHHHHHHH-----HHHHHHHHHHHHHHhc
Confidence 11222 233333333332 1 221 1112222222222211 1112233333333448
Q ss_pred cHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782 270 KLEEACKYFEMMVDEGIPPY---SSTVEMLRNRLVGLGFLDIIEILADKMERSTSCT 323 (350)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 323 (350)
.+..|..-+++|++. .+-. ...+..+..+|...|-.++|.+.-+-+...-+.+
T Consensus 182 ~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 182 AYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred ChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 888888888888876 2332 3456667788888888888888776665544433
No 233
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.56 E-value=0.32 Score=39.52 Aligned_cols=166 Identities=9% Similarity=0.018 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHccCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 018782 150 FTYNCIIRKLCKNEKVE---EAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVL 226 (350)
Q Consensus 150 ~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 226 (350)
.+...++.+|...+..+ +|.++++.+...... .+..+..-+..+.+.++.+.+.+.+..|...- ......+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 45666777777776654 455666666544322 34555556666667788888888888888752 22334455555
Q ss_pred HHHHH--cCCHhHHHHHHHHHHhcCCCCCHH-HHH-HHHHHHhh--cc------CcHHHHHHHHHHHHh-CCCCCCHHHH
Q 018782 227 KLLVR--VGRFDRATEVWESMEKRGFYPSVS-TYS-VMVHGLCK--KK------GKLEEACKYFEMMVD-EGIPPYSSTV 293 (350)
Q Consensus 227 ~~~~~--~~~~~~a~~~~~~~~~~~~~p~~~-~~~-~ll~~~~~--~~------~~~~~a~~~~~~~~~-~~~~~~~~~~ 293 (350)
..+.. ......|...+..+....+.|... ... .++..... .. +..+...++++.... .+.+.+..+.
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 54422 123445666666665444444443 111 11111111 10 114444445553332 2233444433
Q ss_pred HHH-------HHHHHcCCChhHHHHHHHHhh
Q 018782 294 EML-------RNRLVGLGFLDIIEILADKME 317 (350)
Q Consensus 294 ~~l-------~~~~~~~g~~~~a~~~~~~~~ 317 (350)
..+ +..+.+.++++.|.++++-..
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 222 345678899999999988543
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.15 Score=42.44 Aligned_cols=96 Identities=7% Similarity=0.036 Sum_probs=73.7
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHH
Q 018782 115 FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYN-AILAY 193 (350)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~ 193 (350)
.++..+..++.+.+++..|+......+..+ ++|.-..---..++...|+++.|+..|+++.+. .|+..... .++..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 467788999999999999999999998876 667877778889999999999999999999987 44444444 44443
Q ss_pred HhcccC-HHHHHHHHHHHHhC
Q 018782 194 HCDRAE-VNMALRLITRMTKE 213 (350)
Q Consensus 194 ~~~~~~-~~~a~~~~~~~~~~ 213 (350)
-.+... .+...++|..|...
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 333333 34456788888664
No 235
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.51 E-value=0.18 Score=36.04 Aligned_cols=126 Identities=12% Similarity=0.163 Sum_probs=69.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 018782 154 CIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVG 233 (350)
Q Consensus 154 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 233 (350)
.++..+...+.+..+..+++.+...+. .+....+.++..|++.+ .......++. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 445555556666677777776666553 45566666666666543 2333333331 122344455667777777
Q ss_pred CHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 018782 234 RFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG 302 (350)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (350)
-++++..++..+.. .......++ ...++++.|.+++.+ ..++..|..++..+..
T Consensus 84 l~~~~~~l~~k~~~-----~~~Al~~~l----~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 84 LYEEAVELYKKDGN-----FKDAIVTLI----EHLGNYEKAIEYFVK------QNNPELWAEVLKALLD 137 (140)
T ss_pred cHHHHHHHHHhhcC-----HHHHHHHHH----HcccCHHHHHHHHHh------CCCHHHHHHHHHHHHc
Confidence 77777777766532 112222222 222567777776664 1255666666665543
No 236
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.45 E-value=0.0092 Score=32.70 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=13.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782 47 YSILVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
+..+...|...|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444444555555555555555555444
No 237
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.22 Score=45.38 Aligned_cols=246 Identities=15% Similarity=0.162 Sum_probs=150.5
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhh-----c------------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKH-----E------------FTPTVKTYSILVRGLGDVGELSEARKLFDEMLE 72 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 72 (350)
....+.++.++...+++-.-.-+++.+.+ + ..........-+..+.+...++-|..+-+.-
T Consensus 283 ~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~-- 360 (933)
T KOG2114|consen 283 NSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ-- 360 (933)
T ss_pred ccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc--
Confidence 34456677777777765444333333321 0 1122334556677777788888887765542
Q ss_pred cCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc
Q 018782 73 RKCPVDILAH----NSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN 148 (350)
Q Consensus 73 ~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 148 (350)
+. +..+. .....-+.+.|++++|...|-+.+.. ++|. .++.-|.....+.....+++.+.+.|+. +
T Consensus 361 -~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~ 430 (933)
T KOG2114|consen 361 -HL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-N 430 (933)
T ss_pred -CC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-c
Confidence 22 33333 33344556789999999999888754 3443 3566677778888888999999999864 6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 018782 149 VFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKL 228 (350)
Q Consensus 149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 228 (350)
...-..|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.++|..+-..... +......+
T Consensus 431 ~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il--- 499 (933)
T KOG2114|consen 431 SDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL--- 499 (933)
T ss_pred chhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---
Confidence 6666789999999999998887776654 2221 11234556666677777777666544322 33333333
Q ss_pred HHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 018782 229 LVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVD 283 (350)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 283 (350)
+...+++++|.+.+..+.-...-+....|...+ . . ..+++-..++-+...
T Consensus 500 le~~~ny~eAl~yi~slp~~e~l~~l~kyGk~L---l-~-h~P~~t~~ili~~~t 549 (933)
T KOG2114|consen 500 LEDLHNYEEALRYISSLPISELLRTLNKYGKIL---L-E-HDPEETMKILIELIT 549 (933)
T ss_pred HHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHH---H-h-hChHHHHHHHHHHHh
Confidence 445788999999988774222222333333332 1 2 456666666655543
No 238
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.42 E-value=0.11 Score=35.83 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=71.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHH
Q 018782 49 ILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDA---FSYSIFIHAFC 125 (350)
Q Consensus 49 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 125 (350)
.-..+++..|+.+.|++.|.+.+.. .|-....||.-..++.-.|+.++|++=+++..+..-..+. ..|..-...|.
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3345677889999999999988876 3447888999999999999999999888888764222222 23444556677
Q ss_pred hcCCHhHHHHHHHHHhhCC
Q 018782 126 EANDIHSVFRVLDSMKRYN 144 (350)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~ 144 (350)
..|+.+.|..-|+...+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 8899999998888887776
No 239
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.30 E-value=0.2 Score=40.62 Aligned_cols=152 Identities=11% Similarity=0.072 Sum_probs=86.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC---CCCccHHHHHHHHHHHHccCCHHH
Q 018782 91 KAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY---NLVPNVFTYNCIIRKLCKNEKVEE 167 (350)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 167 (350)
..|++.+|-..++++++. .+.|...+...=.+|.-.|+.......++++... ++|-..++...+..++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 345666666666666665 4556666666666777777777777777766433 222223333444455566777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC---CCCChhHHHHHHHHHHHcCCHhHHHHHHHH
Q 018782 168 AYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN---VMPDRHTYNMVLKLLVRVGRFDRATEVWES 244 (350)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 244 (350)
|++.-++..+.+.. |...-.++...+--.++..++.++..+-...- --.-...|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 77777777666533 55555666666666677777766655432210 000011122223344455677777777754
No 240
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.21 Score=45.55 Aligned_cols=151 Identities=16% Similarity=0.196 Sum_probs=94.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018782 12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK 91 (350)
Q Consensus 12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (350)
....-+..+.+...++.|..+-..-..+..............+.+.|++++|...|-+-+.. +.|+ .++.-|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 44556666777777777777765543222222344445555667789999999888776654 3332 24555666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 018782 92 AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQL 171 (350)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 171 (350)
..+..+--.+++.+.+.|+. +...-+.|+.+|.+.++.++...+.+... .|.. ..-....+..+.+.+-.++|..+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 77777778888888888864 55666778899999998888777766654 2311 11223344455555555555444
Q ss_pred H
Q 018782 172 L 172 (350)
Q Consensus 172 ~ 172 (350)
-
T Consensus 486 A 486 (933)
T KOG2114|consen 486 A 486 (933)
T ss_pred H
Confidence 3
No 241
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.23 E-value=0.18 Score=39.65 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=46.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHhhHHHHH
Q 018782 46 TYSILVRGLGDVGELSEARKLFDEMLERKCP--VDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAE-P-DAFSYSIFI 121 (350)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~ 121 (350)
.|+..+..+ +.|++..|...|...++..+. -....+..|..++...|+++.|..+|..+.+.-.. | -+..+..|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344433333 334455555555555544211 12334444555555555555555555555543111 1 123444455
Q ss_pred HHHHhcCCHhHHHHHHHHHhhC
Q 018782 122 HAFCEANDIHSVFRVLDSMKRY 143 (350)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~ 143 (350)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555555666666666555543
No 242
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.23 E-value=0.018 Score=31.56 Aligned_cols=39 Identities=13% Similarity=0.026 Sum_probs=21.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHH
Q 018782 12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSIL 50 (350)
Q Consensus 12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 50 (350)
++..+..++...|++++|.++|+++.+..|.++..+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 344455555555555555555555555555555554444
No 243
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.23 E-value=0.07 Score=42.04 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----------------CCHhHHHHH
Q 018782 78 DILAHNSLLEAMCK-----AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEA----------------NDIHSVFRV 136 (350)
Q Consensus 78 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~ 136 (350)
|-.+|...+..+.. .+.++-....++.|.+.|++.|..+|+.|+..+-+. .+-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44444444444432 234455555566666666666666666666654332 123457888
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHccCCH
Q 018782 137 LDSMKRYNLVPNVFTYNCIIRKLCKNEKV 165 (350)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 165 (350)
+++|..+|+.||..+-..++.++.+.+-+
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 88888888888888888888888887754
No 244
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.22 E-value=0.27 Score=35.12 Aligned_cols=84 Identities=11% Similarity=0.050 Sum_probs=40.1
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 018782 49 ILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN 128 (350)
Q Consensus 49 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (350)
.++..+...+.+.....+++.+...+. .+...++.++..|++.. .....+.+.. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 344444444555555555555555442 34555555555555442 2233333331 112233344555555555
Q ss_pred CHhHHHHHHHHH
Q 018782 129 DIHSVFRVLDSM 140 (350)
Q Consensus 129 ~~~~a~~~~~~~ 140 (350)
-++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555554
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.16 E-value=0.28 Score=34.72 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=23.4
Q ss_pred HhcCCHhHHHHHHHHHhhCCC--CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 018782 125 CEANDIHSVFRVLDSMKRYNL--VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG 179 (350)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 179 (350)
.+.|++++|.+.|+.+...-. +-...+--.++.+|.+.+++++|...+++.++..
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 344445555555544443210 1122233334444444455555544444444443
No 246
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.12 E-value=0.22 Score=39.20 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC--CCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC--CCCCHHHHHHH
Q 018782 221 TYNMVLKLLVRVGRFDRATEVWESMEKRGFY--PSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG--IPPYSSTVEML 296 (350)
Q Consensus 221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l 296 (350)
.|+.-+. +.+.|++..|..-|...++.... -....+--|..++... |+++.|..+|..+.+.. .+--+..+..|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~q-g~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQ-GDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhc-ccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 4554443 34556677777777777654111 0112233355555555 77777777777766542 12234666677
Q ss_pred HHHHHcCCChhHHHHHHHHhhccCCCcHHHH
Q 018782 297 RNRLVGLGFLDIIEILADKMERSTSCTIQEL 327 (350)
Q Consensus 297 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 327 (350)
..+..+.|+.++|..+|+++.+.=|..+...
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 7777777777777777777766555554443
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.09 E-value=0.6 Score=37.93 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHhcCCHh---HHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018782 115 FSYSIFIHAFCEANDIH---SVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAIL 191 (350)
Q Consensus 115 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 191 (350)
.++..++.++...+..+ +|..+++.+.... +-...++..-+..+.+.++.+.+.+.+.+|...-.. ....+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 35566777777766544 4555555564432 223455555667777788888888888888876221 334455444
Q ss_pred HHHh--cccCHHHHHHHHHHHHhCCCCCCh
Q 018782 192 AYHC--DRAEVNMALRLITRMTKENVMPDR 219 (350)
Q Consensus 192 ~~~~--~~~~~~~a~~~~~~~~~~~~~~~~ 219 (350)
..+. .......+...+..+....+.|..
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 4442 123344566666665555455544
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.09 E-value=0.3 Score=34.51 Aligned_cols=78 Identities=10% Similarity=0.072 Sum_probs=48.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHhhhcCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782 13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTP---TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAM 89 (350)
Q Consensus 13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (350)
+..-.....+.|++++|.+.|+.+....|. ...+...++.+|.+.++++.|...+++.++..+...-.-|...+.++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 333344455677888888888887664443 33556667777777888888888887777765443333344444444
Q ss_pred H
Q 018782 90 C 90 (350)
Q Consensus 90 ~ 90 (350)
+
T Consensus 93 ~ 93 (142)
T PF13512_consen 93 S 93 (142)
T ss_pred H
Confidence 3
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.08 E-value=0.5 Score=36.98 Aligned_cols=75 Identities=20% Similarity=0.202 Sum_probs=47.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 018782 51 VRGLGDVGELSEARKLFDEMLERKC--PVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFC 125 (350)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (350)
+..-.+.|++++|.+.|+.+..+.+ +-...+.-.++.++.+.++++.|+...++....-..-....|...|.+.+
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 3334577888888888888876522 22345556667778888888888888888776532222223444444444
No 250
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.06 E-value=0.17 Score=39.93 Aligned_cols=102 Identities=20% Similarity=0.260 Sum_probs=57.0
Q ss_pred ccHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhH
Q 018782 147 PNVFTYNCIIRKLCK-----NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHT 221 (350)
Q Consensus 147 ~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 221 (350)
-|..+|...+..+.. .+..+-....++.|.+.|+.-|..+|+.|+..+-+-. +.|. ..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-nv 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-NV 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-HH
Confidence 355556555555533 3445555666666666666666666666666543211 1111 11
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhc
Q 018782 222 YNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKK 267 (350)
Q Consensus 222 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 267 (350)
+..+.-.|- .+-+-+.+++++|...|+.||..+-..++.+|.+.
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~ 171 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRW 171 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccc
Confidence 111111121 22344677888888888888888888888777554
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.58 Score=37.41 Aligned_cols=154 Identities=13% Similarity=0.121 Sum_probs=100.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCH
Q 018782 86 LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKV 165 (350)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 165 (350)
.......|++.+|...|....... +-+...-..+..+|...|+.+.|..++..+...--.........-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 345667889999999999988763 2345566678889999999999999999886543222223333345555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCC-CCChhHHHHHHHHHHHcCCHhHHHHHH
Q 018782 166 EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENV-MPDRHTYNMVLKLLVRVGRFDRATEVW 242 (350)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 242 (350)
.+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+.+. .-|...-..++..+.-.|.-+.+..-+
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY 295 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence 5555555554443 12666666777788888999998887777665421 235566777888887777544443333
No 252
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.99 E-value=0.31 Score=33.75 Aligned_cols=135 Identities=13% Similarity=0.168 Sum_probs=77.8
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhH---HHHHHHHHHHcCCHhH
Q 018782 161 KNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHT---YNMVLKLLVRVGRFDR 237 (350)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ 237 (350)
-.|..++..++..+..... +..-++.++.-....-+-+-..+.++.+-+ -.|... ...++.+|...|.
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT----
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc---
Confidence 4567777777777766542 445555555555544444544444444432 122221 1233444443332
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782 238 ATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME 317 (350)
Q Consensus 238 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 317 (350)
+...+...+..+..+ |+-+.-.+++..+...+ .+++..+..+..+|.+.|+..++.+++++.-
T Consensus 85 ---------------~se~vD~ALd~lv~~-~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 85 ---------------LSEYVDLALDILVKQ-GKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp -----------------HHHHHHHHHHHHT-T-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHh-ccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 344455566666656 88999999999987755 7899999999999999999999999999998
Q ss_pred ccCC
Q 018782 318 RSTS 321 (350)
Q Consensus 318 ~~~~ 321 (350)
+.+.
T Consensus 148 ekG~ 151 (161)
T PF09205_consen 148 EKGL 151 (161)
T ss_dssp HTT-
T ss_pred Hhch
Confidence 7764
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.95 E-value=0.32 Score=33.62 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=26.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 018782 89 MCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKR 142 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 142 (350)
....|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|++-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555443 123344555555555555555555555544433
No 254
>PRK11906 transcriptional regulator; Provisional
Probab=95.94 E-value=0.94 Score=38.88 Aligned_cols=116 Identities=14% Similarity=0.052 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHhh---hcCCCCHHHHHHHHHHHhcc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782 25 HVKVAHQFFDNAK---HEFTPTVKTYSILVRGLGDV---------GELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA 92 (350)
Q Consensus 25 ~~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (350)
..+.|..+|.+.. ...|.....|..+..++... ....+|.++-++..+.+.. |+.+...+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhh
Confidence 3455666666665 23333344444444333221 2233445555555554332 555555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 018782 93 GNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKR 142 (350)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 142 (350)
++++.|...|++....+ +-...+|....-.+.-.|+.++|.+.+++..+
T Consensus 352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 55666666666665542 11223444444444455666666666665444
No 255
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.82 E-value=0.15 Score=40.72 Aligned_cols=81 Identities=20% Similarity=0.296 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhhH
Q 018782 43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRS-----IGAEPDAFSY 117 (350)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 117 (350)
-..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 45678889999999999999999999999884 44889999999999999999999999998865 6788888877
Q ss_pred HHHHHHH
Q 018782 118 SIFIHAF 124 (350)
Q Consensus 118 ~~l~~~~ 124 (350)
.......
T Consensus 231 ~~y~~~~ 237 (280)
T COG3629 231 ALYEEIL 237 (280)
T ss_pred HHHHHHh
Confidence 7776663
No 256
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=0.69 Score=35.92 Aligned_cols=51 Identities=10% Similarity=0.124 Sum_probs=22.9
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhc---CCCCCHHHHHHHHHHHhhccCcHHHHHHH
Q 018782 225 VLKLLVRVGRFDRATEVWESMEKR---GFYPSVSTYSVMVHGLCKKKGKLEEACKY 277 (350)
Q Consensus 225 l~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 277 (350)
.|-.+....++..|.+.++.-.+. .-.-+..+...|+.+|- . |+.+++.++
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~-gD~E~~~kv 249 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-E-GDIEEIKKV 249 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-c-CCHHHHHHH
Confidence 333444445555555555553221 11123445555555542 2 555554443
No 257
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.71 E-value=0.23 Score=39.74 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhh-----CCCCccHHHH
Q 018782 78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKR-----YNLVPNVFTY 152 (350)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 152 (350)
-..++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 45677889999999999999999999999874 56888999999999999999999999998854 6889998888
Q ss_pred HHHHHHHH
Q 018782 153 NCIIRKLC 160 (350)
Q Consensus 153 ~~l~~~~~ 160 (350)
........
T Consensus 231 ~~y~~~~~ 238 (280)
T COG3629 231 ALYEEILR 238 (280)
T ss_pred HHHHHHhc
Confidence 77776633
No 258
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=1.7 Score=39.51 Aligned_cols=255 Identities=15% Similarity=0.162 Sum_probs=142.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------
Q 018782 43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCP----VDILAHNSLLEAMCKAGNIDEAHGMLREMRSIG--------- 109 (350)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------- 109 (350)
...+|..+.+.....|+++-|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+.+.-
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777889999998888753332211 122234455666777888877777776665431
Q ss_pred --CCCCHhhHHHHHH--------HHHhcCCHhHHHHHH--HHHhh-CCCCccHHHHHHHHHHHHccCCHHH---------
Q 018782 110 --AEPDAFSYSIFIH--------AFCEANDIHSVFRVL--DSMKR-YNLVPNVFTYNCIIRKLCKNEKVEE--------- 167 (350)
Q Consensus 110 --~~~~~~~~~~l~~--------~~~~~~~~~~a~~~~--~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~--------- 167 (350)
.+.....|..+++ .+...++-..+...| +.... ..+.+-.........++.+.....-
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred HhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 0111111221111 001111111111111 11000 0011122222333444444433211
Q ss_pred -HHHHHHHHHH-cCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHH
Q 018782 168 -AYQLLDEMIE-RGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESM 245 (350)
Q Consensus 168 -a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 245 (350)
-+.+.+.+.. .+......+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..++|++-+++-+..
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk 741 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK 741 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 1122222221 2323334455556666777899999988876653 378889998999999999999888776665
Q ss_pred HhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782 246 EKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME 317 (350)
Q Consensus 246 ~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 317 (350)
+. +.-|...+..+.+. |+.++|.+++-+.. +.. ..+.+|.+.|++.+|.++.-+-+
T Consensus 742 ks------PIGy~PFVe~c~~~-~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 742 KS------PIGYLPFVEACLKQ-GNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred CC------CCCchhHHHHHHhc-ccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHHHhc
Confidence 42 44566677776655 99999999987652 222 56788999999999987765443
No 259
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.61 E-value=1.7 Score=39.33 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=37.0
Q ss_pred HHHHHHHccCChHHHHHHHHHhhhc--CCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 018782 15 QLLHALCKRKHVKVAHQFFDNAKHE--FTPTVKTYSILVRGLGDVGELSEARKLFDE 69 (350)
Q Consensus 15 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 69 (350)
..+....+.|++-...+++..-..+ ...-...|+.+...++....+++|.+.|..
T Consensus 765 LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677888888888777664321 223346677777777777777777777764
No 260
>PRK11906 transcriptional regulator; Provisional
Probab=95.44 E-value=1.5 Score=37.71 Aligned_cols=118 Identities=16% Similarity=0.083 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHhc-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 018782 59 ELSEARKLFDEMLER-KCPVD-ILAHNSLLEAMCK---------AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEA 127 (350)
Q Consensus 59 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (350)
..+.|+.+|.+.... ...|+ ...|..+..++.. ..+..+|.++-++..+.+ +.|......+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 355677778777721 12232 4444444443332 123455666666666654 34666666666666666
Q ss_pred CCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 018782 128 NDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER 178 (350)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (350)
++.+.+...|++....+ +....+|....-...-.|+.++|.+.+++..+.
T Consensus 352 ~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred cchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 77777777777776654 223444555555555677777777777776655
No 261
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.29 E-value=1 Score=34.90 Aligned_cols=223 Identities=21% Similarity=0.152 Sum_probs=116.8
Q ss_pred CCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 018782 58 GELSEARKLFDEMLERKCP-VDILAHNSLLEAMCKAGNIDEAHGMLREMRSI-GAEPDAFSYSIFIHAFCEANDIHSVFR 135 (350)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 135 (350)
+....+...+......... .....+......+...+....+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 5555555555555544222 12455666666667777777777777666542 123344455556666666666777777
Q ss_pred HHHHHhhCCCCccHHHHHHHHH-HHHccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHh
Q 018782 136 VLDSMKRYNLVPNVFTYNCIIR-KLCKNEKVEEAYQLLDEMIERGA--NPDEWSYNAILAYHCDRAEVNMALRLITRMTK 212 (350)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 212 (350)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777666543222 112222222 56666777777777776644211 01222233333334455666666666666655
Q ss_pred CCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782 213 ENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPS-VSTYSVMVHGLCKKKGKLEEACKYFEMMVDE 284 (350)
Q Consensus 213 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 284 (350)
.........+..+...+...++++.|...+...... .|+ ...+......+. ..+..+.+...+......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLL-ELGRYEEALEALEKALEL 265 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence 422112445555566666666666666666666553 222 222333333333 325566666666655544
No 262
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.14 E-value=0.7 Score=32.11 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=20.2
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC
Q 018782 157 RKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN 214 (350)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 214 (350)
..+...|+.+...+++..+.+. -.+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3333444444444444443321 12333333344444444444444444444444433
No 263
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.14 E-value=0.89 Score=33.35 Aligned_cols=136 Identities=14% Similarity=0.144 Sum_probs=80.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782 168 AYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEK 247 (350)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 247 (350)
..++++.+.+.++.|+...+..++..+.+.|++.....+ ...++-+|.......+-.+. +....+.++--+|..
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHH
Confidence 456667777788888999999999999998887654444 44555556554443332222 233444444444443
Q ss_pred cCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782 248 RGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER 318 (350)
Q Consensus 248 ~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 318 (350)
+ + ...+..++..+... |++-+|+++.+...... .+++ ..++++....+|...-..+++-...
T Consensus 87 R-L---~~~~~~iievLL~~-g~vl~ALr~ar~~~~~~-~~~~---~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 R-L---GTAYEEIIEVLLSK-GQVLEALRYARQYHKVD-SVPA---RKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred H-h---hhhHHHHHHHHHhC-CCHHHHHHHHHHcCCcc-cCCH---HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 0 01245555555656 89999998888754332 2222 4456666667776655555554443
No 264
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.12 E-value=0.64 Score=34.73 Aligned_cols=63 Identities=14% Similarity=0.136 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782 45 KTYSILVRGLGDVGELSEARKLFDEMLERKCPVD--ILAHNSLLEAMCKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 107 (350)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+++.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566677777777777777777777666533322 34455666667777777777766666654
No 265
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.01 E-value=1.6 Score=35.69 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHH
Q 018782 273 EACKYFEMMVDEGIPPYSSTVEML 296 (350)
Q Consensus 273 ~a~~~~~~~~~~~~~~~~~~~~~l 296 (350)
.+.++++.+.+.|+++....|..+
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHH
Confidence 444455555555554444444433
No 266
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.01 E-value=1.2 Score=34.06 Aligned_cols=174 Identities=15% Similarity=0.100 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCC-CCChhHHHHHHH
Q 018782 149 VFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENV-MPDRHTYNMVLK 227 (350)
Q Consensus 149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 227 (350)
+.+||-+.--+...|+++.|.+.|+...+..+.-+-...|.-|. +.--|++..|.+-+...-+.+. .|-...|-.+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 44566666666667777777777777766643322222222222 2334666666665555544321 11111222111
Q ss_pred HHHHcCCHhHHHHHH-HHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC-------CHHHHHHHHHH
Q 018782 228 LLVRVGRFDRATEVW-ESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPP-------YSSTVEMLRNR 299 (350)
Q Consensus 228 ~~~~~~~~~~a~~~~-~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~ 299 (350)
.+.-++.+|..-+ ++..+ .|..-|...|-.|.. |++. ...+++++.... .. -..||-.+.+.
T Consensus 177 --E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL--gkiS-~e~l~~~~~a~a-~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL--GKIS-EETLMERLKADA-TDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred --HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH--hhcc-HHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHH
Confidence 1233455554433 22322 244444444433332 2221 122333333221 11 12466677777
Q ss_pred HHcCCChhHHHHHHHHhhccCCCcHHHHHHHhccc
Q 018782 300 LVGLGFLDIIEILADKMERSTSCTIQELANAMRGK 334 (350)
Q Consensus 300 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 334 (350)
+...|+.++|..+|+-....+.-+..+..-+++..
T Consensus 247 ~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL 281 (297)
T COG4785 247 YLSLGDLDEATALFKLAVANNVYNFVEHRYALLEL 281 (297)
T ss_pred HhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 77778888888777777666555554444444433
No 267
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.99 E-value=1.1 Score=33.54 Aligned_cols=61 Identities=10% Similarity=0.201 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc--HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018782 116 SYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN--VFTYNCIIRKLCKNEKVEEAYQLLDEMI 176 (350)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 176 (350)
.+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|+...-.+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455555555555555555555544332221 1233344444444555555554444443
No 268
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.97 E-value=2.4 Score=37.49 Aligned_cols=123 Identities=12% Similarity=0.072 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782 185 WSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGL 264 (350)
Q Consensus 185 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 264 (350)
.+|...+..-...|+.+.+.-+++...-. +..-...|-..+.-....|+.+-|..++....+- ..|+......+-..+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i-~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKI-HVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh-cCCCCcHHHHHHHHH
Confidence 34555555555666666666666554432 1122233444444444457777666666655543 233444444455555
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 018782 265 CKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIE 310 (350)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 310 (350)
+...|+++.|..+++...+.- +-....-..-+....+.|..+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhh
Confidence 666678888888888877664 333333333444555667766666
No 269
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.86 E-value=1.1 Score=32.91 Aligned_cols=101 Identities=15% Similarity=0.200 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782 65 KLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN 144 (350)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 144 (350)
+.++.+.+.+++|+...+..++..+.+.|++... .++...++-+|.......+-.+. +....+.++--+|.+.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 3444445556666666666666666666664433 33333344444443333332221 1222233333233221
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782 145 LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEM 175 (350)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 175 (350)
=...+..++..+...|++-+|.++.+..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012334455555666666666665554
No 270
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.82 E-value=0.04 Score=28.14 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=25.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHH
Q 018782 278 FEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIE 310 (350)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 310 (350)
|++.++.. |-++..|..+...+...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45666666 778889999999999999998875
No 271
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=1.5 Score=34.15 Aligned_cols=44 Identities=16% Similarity=0.059 Sum_probs=20.0
Q ss_pred CcHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHcCCChhHHHHHH
Q 018782 269 GKLEEACKYFEMMVDEG---IPPYSSTVEMLRNRLVGLGFLDIIEILA 313 (350)
Q Consensus 269 ~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 313 (350)
.++..|.+.++.-.+.+ -+.+..+...|+.+| ..|+.+++.+++
T Consensus 204 ~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 204 HDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 45555555555533221 122344445554444 245555554443
No 272
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.66 E-value=2.5 Score=36.18 Aligned_cols=259 Identities=15% Similarity=0.119 Sum_probs=144.4
Q ss_pred HHccCChHHHHHHHHHhhhcCCCCHHHH------HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHh
Q 018782 20 LCKRKHVKVAHQFFDNAKHEFTPTVKTY------SILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLE--AMCK 91 (350)
Q Consensus 20 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~ 91 (350)
+.+++++.+|..+|.++.+....++..+ +.++++|-. ++.+.....+..+.+.. | ...|-.+.. .+.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 4578899999999999977545454333 455666643 45666666665555542 2 223333333 3567
Q ss_pred cCCHHHHHHHHHHHHhC--CCCC------------CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCC----CccHHHHH
Q 018782 92 AGNIDEAHGMLREMRSI--GAEP------------DAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNL----VPNVFTYN 153 (350)
Q Consensus 92 ~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~ 153 (350)
.+.+.+|.+.+..-.+. +..| |-..=+..+.++...|++.++..+++++...=+ .-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 88999999988877654 3222 111224567788899999999999988865432 36778888
Q ss_pred HHHHHHHcc-------C--------CHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHhcc--cCHHHHHHHHHHH
Q 018782 154 CIIRKLCKN-------E--------KVEEAYQLLDEMIER------GANPDEWSYNAILAYHCDR--AEVNMALRLITRM 210 (350)
Q Consensus 154 ~l~~~~~~~-------g--------~~~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~ 210 (350)
.++-.+.++ + -++.+.-...++... ...|....+..++....-. .+..--.++++.-
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 755554442 1 123333333444322 2334445555555544321 1222223333333
Q ss_pred HhCCCCCChh-HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC----CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782 211 TKENVMPDRH-TYNMVLKLLVRVGRFDRATEVWESMEKRGFYP----SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG 285 (350)
Q Consensus 211 ~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 285 (350)
...-+.|+.. ....+...+.+ +.+++..+.+.+....+.+ =..+|..++.....+ ++...|-..+.-+....
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~-~~T~~a~q~l~lL~~ld 328 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQ-VQTEEAKQYLALLKILD 328 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHhcC
Confidence 3333455532 22333444443 5666666666555432111 134566666665555 88888888887776543
No 273
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.66 E-value=2.2 Score=35.42 Aligned_cols=226 Identities=12% Similarity=0.085 Sum_probs=133.9
Q ss_pred HHccCChHHHHHHHHHhhhc---CCCCHHHHHHHHHHHhccCCHHHHHHHHHH----HHhcC-CCCCHHHHHHHHHHHHh
Q 018782 20 LCKRKHVKVAHQFFDNAKHE---FTPTVKTYSILVRGLGDVGELSEARKLFDE----MLERK-CPVDILAHNSLLEAMCK 91 (350)
Q Consensus 20 ~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~~ 91 (350)
+....+..+|+..|...... ....-.++..+..+.++.|.+++++..--. ..+.. -..-...|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888887765331 122335567777888888888876653322 22110 00113345556666666
Q ss_pred cCCHHHHHHHHHHHHhC-CCCCC---HhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCC-----CccHHHHHHHHHHHHcc
Q 018782 92 AGNIDEAHGMLREMRSI-GAEPD---AFSYSIFIHAFCEANDIHSVFRVLDSMKRYNL-----VPNVFTYNCIIRKLCKN 162 (350)
Q Consensus 92 ~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~ 162 (350)
.-++.+++.+-..-... |..|. -.....+..++.-.+.++++++.|+...+... .....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66666666655544432 12221 12334466777778889999999887754211 12346788888999999
Q ss_pred CCHHHHHHHHHHHHHc----CCCCCH-HHHHH-----HHHHHhcccCHHHHHHHHHHHH----hCCCCC-ChhHHHHHHH
Q 018782 163 EKVEEAYQLLDEMIER----GANPDE-WSYNA-----ILAYHCDRAEVNMALRLITRMT----KENVMP-DRHTYNMVLK 227 (350)
Q Consensus 163 g~~~~a~~~~~~~~~~----~~~~~~-~~~~~-----ll~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~l~~ 227 (350)
.++++|.-+..+..+. ++. |. .-|.. +.-++...|....|.+.-++.. ..|-.+ .......+.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 9999988877765542 222 22 12222 3334556677777766666643 333222 2234456778
Q ss_pred HHHHcCCHhHHHHHHHHHH
Q 018782 228 LLVRVGRFDRATEVWESME 246 (350)
Q Consensus 228 ~~~~~~~~~~a~~~~~~~~ 246 (350)
.|...|+.+.|+.-|++..
T Consensus 255 IyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHhcccHhHHHHHHHHHH
Confidence 8999999999988887754
No 274
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.57 E-value=1.2 Score=32.23 Aligned_cols=87 Identities=15% Similarity=-0.028 Sum_probs=42.8
Q ss_pred HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782 21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG 100 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 100 (350)
.+.++.+.+..+++.+.---|..+..-..-...+...|++.+|..+|+++.... |....-..|+..|.....-..-..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr~ 98 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWRR 98 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHHH
Confidence 455666666666666654333334433444445556667777777776665542 222333334444443333333333
Q ss_pred HHHHHHhCC
Q 018782 101 MLREMRSIG 109 (350)
Q Consensus 101 ~~~~~~~~~ 109 (350)
.-+++.+.+
T Consensus 99 ~A~evle~~ 107 (160)
T PF09613_consen 99 YADEVLESG 107 (160)
T ss_pred HHHHHHhcC
Confidence 334444443
No 275
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.47 E-value=2.3 Score=34.86 Aligned_cols=130 Identities=16% Similarity=0.237 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh--cC----CHhHHHHHHHHHhhCCC---CccHHHHHHHHHHHHccCCH
Q 018782 95 IDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE--AN----DIHSVFRVLDSMKRYNL---VPNVFTYNCIIRKLCKNEKV 165 (350)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 165 (350)
+++.+.+++.+.+.|+..+..+|-+....... .. ....+..+|+.|.+... .++...+..++.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677777777777666555443333222 11 24567777888766531 1233444444332 33332
Q ss_pred ----HHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhcccC--HHHHHHHHHHHHhCCCCCChhHHHHHH
Q 018782 166 ----EEAYQLLDEMIERGANPDEW--SYNAILAYHCDRAE--VNMALRLITRMTKENVMPDRHTYNMVL 226 (350)
Q Consensus 166 ----~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~ 226 (350)
+.++.+|+.+.+.|...+.. ....++..+-...+ ..++.++++.+.+.++++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 45566666666655544322 23333332222221 346677777777777776666655444
No 276
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.42 E-value=0.067 Score=27.27 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=18.2
Q ss_pred HhhhcCCCCHHHHHHHHHHHhccCCHHHHH
Q 018782 35 NAKHEFTPTVKTYSILVRGLGDVGELSEAR 64 (350)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 64 (350)
+.....|.++.+|+.+...|...|++++|+
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 333444666666666666666666666654
No 277
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.41 E-value=2.5 Score=35.07 Aligned_cols=226 Identities=12% Similarity=0.064 Sum_probs=133.2
Q ss_pred ccCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH----HHHhCC-CCCCHhhHHHHHHHHHhcC
Q 018782 56 DVGELSEARKLFDEMLERK--CPVDILAHNSLLEAMCKAGNIDEAHGMLR----EMRSIG-AEPDAFSYSIFIHAFCEAN 128 (350)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~----~~~~~~-~~~~~~~~~~l~~~~~~~~ 128 (350)
...+.++|+..+.+-..+- ...--.++..+..+.++.|.+++++..-- ...+.. -..--..|..+.+++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666554430 01122345556677778888777654322 222210 0011235666677777777
Q ss_pred CHhHHHHHHHHHhhC-CCCc---cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhcccC
Q 018782 129 DIHSVFRVLDSMKRY-NLVP---NVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG-----ANPDEWSYNAILAYHCDRAE 199 (350)
Q Consensus 129 ~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~ 199 (350)
++.+++.+-+.-... |..| ......++..++...+.++++++.|+...+.. .......+..|-..|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 778888777765442 2222 12344557788888889999999999876531 11234568888899999999
Q ss_pred HHHHHHHHHHHHhC----CCCCChhHH-----HHHHHHHHHcCCHhHHHHHHHHHHhcCC-CCCHHHH----HHHHHHHh
Q 018782 200 VNMALRLITRMTKE----NVMPDRHTY-----NMVLKLLVRVGRFDRATEVWESMEKRGF-YPSVSTY----SVMVHGLC 265 (350)
Q Consensus 200 ~~~a~~~~~~~~~~----~~~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~----~~ll~~~~ 265 (350)
.++|.-+.....+. ++.--..-| ..+.-++...|.+..|.+..++..+..+ .-|..++ ..+...|-
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 99988777665432 221111122 3345567788998888888887654311 1133333 33444443
Q ss_pred hccCcHHHHHHHHHHHH
Q 018782 266 KKKGKLEEACKYFEMMV 282 (350)
Q Consensus 266 ~~~~~~~~a~~~~~~~~ 282 (350)
..|+.+.|+.-|+...
T Consensus 258 -~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 258 -SRGDLERAFRRYEQAM 273 (518)
T ss_pred -hcccHhHHHHHHHHHH
Confidence 3489999888887653
No 278
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.32 E-value=1.3 Score=31.54 Aligned_cols=52 Identities=15% Similarity=0.056 Sum_probs=30.1
Q ss_pred ccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782 22 KRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
..++++++..+++.+.--.|.....-..-...+...|++.+|.++|+++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3566666666666665433333333333444455666777777777766665
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.32 E-value=0.14 Score=26.42 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 018782 82 HNSLLEAMCKAGNIDEAHGMLRE 104 (350)
Q Consensus 82 ~~~l~~~~~~~~~~~~a~~~~~~ 104 (350)
|..|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555
No 280
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.29 E-value=1.9 Score=33.30 Aligned_cols=202 Identities=18% Similarity=0.123 Sum_probs=83.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHhhC-CCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 018782 115 FSYSIFIHAFCEANDIHSVFRVLDSMKRY-NLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILA- 192 (350)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~- 192 (350)
..+......+...+++..+...+...... ........+......+...+.+..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444455555555555555444331 112333444444444444555555555555554432221 111111111
Q ss_pred HHhcccCHHHHHHHHHHHHhCCC--CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCc
Q 018782 193 YHCDRAEVNMALRLITRMTKENV--MPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGK 270 (350)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 270 (350)
.+...++++.+...+........ ......+......+...++.+.+...+..............+..+-..+... ++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL-GK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc-cc
Confidence 34455555555555555433111 0112222222333444455555555555554431110123333333333322 44
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782 271 LEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
++.+...+....... +.....+..+...+...+..+.+...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555555555554433 112333333333333444455555555554443
No 281
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.17 E-value=4.3 Score=36.81 Aligned_cols=180 Identities=13% Similarity=0.084 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHh-------CCCCCCHhhHHHHHHHHHhc
Q 018782 60 LSEARKLFDEMLERKCPVDILAHNSLLEA-----MCKAGNIDEAHGMLREMRS-------IGAEPDAFSYSIFIHAFCEA 127 (350)
Q Consensus 60 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 127 (350)
...+.++++...+.| +......+..+ +....+.+.|+.+|+.+.+ .| .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777777777765 33333333332 2345677888888887766 44 223445566666553
Q ss_pred C-----CHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--cccC
Q 018782 128 N-----DIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK-NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHC--DRAE 199 (350)
Q Consensus 128 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~ 199 (350)
. +.+.|..++....+.| .|+....-..+..... ..+...|.++|...-+.|.. ....+..++.... ...+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERN 379 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCC
Confidence 2 5666888888777776 3444443333322222 24567888888887777633 2222222222111 3456
Q ss_pred HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcC
Q 018782 200 VNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRG 249 (350)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 249 (350)
...|..++++..+.|. |...--...+..+.. +.++.+.-.+..+.+.|
T Consensus 380 ~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 7778888888777762 322211222223333 56666665555555443
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.01 E-value=0.15 Score=26.37 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=19.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH
Q 018782 46 TYSILVRGLGDVGELSEARKLFDEML 71 (350)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 71 (350)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
No 283
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.99 E-value=3.7 Score=35.48 Aligned_cols=122 Identities=11% Similarity=-0.030 Sum_probs=85.6
Q ss_pred HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782 21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG 100 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 100 (350)
...|++-.|.+-........+.++.........+...|.++.+.+.+...... +.....+...+++...+.|++++|..
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34567666655554444445555555555566677889999999888776554 34466777888899999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782 101 MLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN 144 (350)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 144 (350)
+-.-|....++ ++.............|-++++...|+++...+
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999877654 44444444444556677889999998886654
No 284
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.96 E-value=3.9 Score=35.60 Aligned_cols=77 Identities=10% Similarity=0.103 Sum_probs=51.4
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHhhCC-CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHH
Q 018782 116 SYSIFIHAFCEANDIHSVFRVLDSMKRYN-LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA-NPDEWSYNAILA 192 (350)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~ 192 (350)
+-.-+..++-+.|+.++|++.++++.+.. ......+...|+.++...+.+.++..++.+..+... +.-...|+..+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 33456667778888888888888887643 112345677888888888888888888888654322 222345665543
No 285
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.84 E-value=0.18 Score=25.35 Aligned_cols=31 Identities=13% Similarity=-0.036 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHhhccCC
Q 018782 291 STVEMLRNRLVGLGFLDIIEILADKMERSTS 321 (350)
Q Consensus 291 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 321 (350)
..+..+...+...|++++|.+.+++..+..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3556677777777777777777777665544
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.67 E-value=2 Score=31.22 Aligned_cols=112 Identities=14% Similarity=0.111 Sum_probs=61.7
Q ss_pred HHHhcccCHHHHHHHHHHHHhCCCCCChhHH-HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCc
Q 018782 192 AYHCDRAEVNMALRLITRMTKENVMPDRHTY-NMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGK 270 (350)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 270 (350)
..-.+.++.+.+..++..+.-. .|..... ..-...+...|+|.+|.++|+++.+. .|....-..|+..+....|+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCC
Confidence 3445778888888888888774 3443322 22344567888999999999998765 34444444454443333233
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 018782 271 LEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEI 311 (350)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 311 (350)
. .=..+-+++.+.+ +|+.+. .+++.+....+...|..
T Consensus 94 ~-~Wr~~A~evle~~--~d~~a~-~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 94 P-SWRRYADEVLESG--ADPDAR-ALVRALLARADLEPAHE 130 (160)
T ss_pred h-HHHHHHHHHHhcC--CChHHH-HHHHHHHHhccccchhh
Confidence 2 2223334455554 344443 34444444444444443
No 287
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.41 E-value=0.76 Score=30.20 Aligned_cols=60 Identities=15% Similarity=0.255 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782 202 MALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVH 262 (350)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 262 (350)
+..+-+..+....+.|++....+.+++|.+.+++..|.++++.++.. ..+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 34455555566666777777777777777777777777777777643 1112225555544
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.39 E-value=0.23 Score=25.04 Aligned_cols=31 Identities=13% Similarity=-0.035 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHhhccCC
Q 018782 291 STVEMLRNRLVGLGFLDIIEILADKMERSTS 321 (350)
Q Consensus 291 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 321 (350)
.+|..++.++...|++++|+..+++..+.+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4566677777777777777777777766544
No 289
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.18 E-value=2.2 Score=32.23 Aligned_cols=91 Identities=12% Similarity=0.109 Sum_probs=57.9
Q ss_pred HHHhcccCHHHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHhh
Q 018782 192 AYHCDRAEVNMALRLITRMTKENVMPD----RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSV-STYSVMVHGLCK 266 (350)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~ 266 (350)
.-+...|++++|..-|...+...+... ...|..-..++.+.+.++.|..-....++.+ |+. .....-..+|..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHh
Confidence 346678888888888888887632211 1234444556778888888888888777753 321 111222234444
Q ss_pred ccCcHHHHHHHHHHHHhCC
Q 018782 267 KKGKLEEACKYFEMMVDEG 285 (350)
Q Consensus 267 ~~~~~~~a~~~~~~~~~~~ 285 (350)
. ..+++|++-|+.+.+..
T Consensus 181 ~-ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 M-EKYEEALEDYKKILESD 198 (271)
T ss_pred h-hhHHHHHHHHHHHHHhC
Confidence 4 77888888888887765
No 290
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.01 E-value=0.35 Score=24.36 Aligned_cols=26 Identities=19% Similarity=0.163 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782 82 HNSLLEAMCKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 82 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 107 (350)
|..+..++...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 34444444444444444444444443
No 291
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.91 E-value=1.5 Score=28.93 Aligned_cols=50 Identities=6% Similarity=-0.003 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782 270 KLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
+.-+..+-++.+...++-|++.+..+.+++|.+.+++..|+++++-++.+
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34466666777777788888888888888888888888888888877654
No 292
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.85 E-value=1.7 Score=28.26 Aligned_cols=63 Identities=5% Similarity=0.028 Sum_probs=45.5
Q ss_pred HHHHHHHHhhccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782 257 YSVMVHGLCKKKG-KLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 257 ~~~ll~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
|..--..+..... +.-++.+-++.+...++-|++.+..+.+++|.+.+++..|.++++-++.+
T Consensus 8 F~aRye~~F~~~~iD~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 8 FDARYETYFNRPDIDGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHhCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3333334444432 55567777777777888888888888888888888888888888877643
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.78 E-value=3 Score=30.74 Aligned_cols=123 Identities=9% Similarity=0.116 Sum_probs=53.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHH-HHHH--HHHHHHccCCHH
Q 018782 91 KAGNIDEAHGMLREMRSIGAEPDAF-SYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVF-TYNC--IIRKLCKNEKVE 166 (350)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~--l~~~~~~~g~~~ 166 (350)
..+..++|+.-|..+.+.|...=+. ...-........|+...|...|.++-.....|-.. ...- -.-.+...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 3444555555555555544321111 11112223344555555555555554432112111 1111 112234555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC
Q 018782 167 EAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE 213 (350)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 213 (350)
.....++-+...+-..-...-..|.-+-.+.|++..|...|..+...
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 55555555444332223333344444445566666666666655543
No 294
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.67 E-value=7.7 Score=35.23 Aligned_cols=284 Identities=12% Similarity=0.074 Sum_probs=157.7
Q ss_pred hHHHHHHHHHhhhcCCCCHHHHHHHHHH---HhccCCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHHHHhcC--
Q 018782 26 VKVAHQFFDNAKHEFTPTVKTYSILVRG---LGDVGELSEARKLFDEMLE-------RKCPVDILAHNSLLEAMCKAG-- 93 (350)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~-- 93 (350)
...|.++++................+.. +....+.+.|...|....+ .+ .+...+-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 4568888888765323333333333333 3356799999999999877 55 3345666777777743
Q ss_pred ---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHH--ccCCHHH
Q 018782 94 ---NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE-ANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLC--KNEKVEE 167 (350)
Q Consensus 94 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~ 167 (350)
+.+.|+.++...-+.|. |+...+-..+..... ..+...|.++|....+.|.. ...-+.+++.... ...+.+.
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHH
Confidence 66789999999998874 455443333322222 24678999999999998833 3322222222222 3457899
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHH-HHH---HH----cCCHhHHH
Q 018782 168 AYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVL-KLL---VR----VGRFDRAT 239 (350)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~----~~~~~~a~ 239 (350)
|..++.+.-+.|. |...--...+..+.. +.++.+.-.+..+...+.. ...+-...+ ... .. ..+...+.
T Consensus 383 A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 383 AFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHHH
Confidence 9999999998873 232222223333344 7777777666666665542 111111111 110 11 12455566
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhc---cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC---CChhHHHHHH
Q 018782 240 EVWESMEKRGFYPSVSTYSVMVHGLCKK---KGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGL---GFLDIIEILA 313 (350)
Q Consensus 240 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~ 313 (350)
..+......| +......+-..|..- ..+++.|...+......+ ......+...+... ..+..|.+++
T Consensus 460 ~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~~~~a~~~~ 532 (552)
T KOG1550|consen 460 SLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKVLHLAKRYY 532 (552)
T ss_pred HHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcchhHHHHHHH
Confidence 6666665443 222233332222111 135777777777766655 33333444433321 1267788888
Q ss_pred HHhhccCCCcH
Q 018782 314 DKMERSTSCTI 324 (350)
Q Consensus 314 ~~~~~~~~~~~ 324 (350)
++....+....
T Consensus 533 ~~~~~~~~~~~ 543 (552)
T KOG1550|consen 533 DQASEEDSRAY 543 (552)
T ss_pred HHHHhcCchhh
Confidence 88776544433
No 295
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.63 E-value=2.8 Score=34.02 Aligned_cols=100 Identities=10% Similarity=0.178 Sum_probs=48.4
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHH
Q 018782 146 VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG---ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTY 222 (350)
Q Consensus 146 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 222 (350)
+.+..+...++.......+++.+...+-++.... ..|+. +-...++. +-.-++++++.++..-+..|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHH-HHccChHHHHHHHhCcchhccccchhhH
Confidence 3344444444444444455555555555544321 11111 11112222 2223455555555555556666666666
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782 223 NMVLKLLVRVGRFDRATEVWESMEK 247 (350)
Q Consensus 223 ~~l~~~~~~~~~~~~a~~~~~~~~~ 247 (350)
+.+++.+.+.+++.+|.++.-.|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666666665555543
No 296
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.60 E-value=4.6 Score=32.52 Aligned_cols=144 Identities=13% Similarity=0.132 Sum_probs=92.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHh-CCCCCCHhhHHHHHH
Q 018782 47 YSILVRGLGDVGELSEARKLFDEMLE-RKCPVDILAHNSLLEAMCK-AG-NIDEAHGMLREMRS-IGAEPDAFSYSIFIH 122 (350)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~ 122 (350)
|..|+. +..-+.+|+++|+..-. ..+--|..+...+++.... .+ ....-.++.+-+.. .|-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 444443 23456677777773322 2234477777777777665 22 22333333343432 234567778888899
Q ss_pred HHHhcCCHhHHHHHHHHHhhC-CCCccHHHHHHHHHHHHccCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHH
Q 018782 123 AFCEANDIHSVFRVLDSMKRY-NLVPNVFTYNCIIRKLCKNEKVEEAYQLLDE-----MIERGANPDEWSYNAILAY 193 (350)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~ll~~ 193 (350)
.+++.+++.+..++++..... +...|...|..+|+.....|+..-...+.++ +.+.++..+...-..+-..
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 999999999999999887655 5566888899999999999998877777765 2344555555554444443
No 297
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.58 E-value=6.6 Score=34.27 Aligned_cols=78 Identities=12% Similarity=0.146 Sum_probs=55.0
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC--hhHHHH
Q 018782 148 NVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-PDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPD--RHTYNM 224 (350)
Q Consensus 148 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 224 (350)
-..+-..+..++-+.|+.++|.+.++++.+.... ........|+.++...+.+.++..++.+..+... |. ...|+.
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTa 336 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTA 336 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHH
Confidence 3444455677777889999999999999875432 2345677889999999999999999988765433 33 234554
Q ss_pred HH
Q 018782 225 VL 226 (350)
Q Consensus 225 l~ 226 (350)
.+
T Consensus 337 AL 338 (539)
T PF04184_consen 337 AL 338 (539)
T ss_pred HH
Confidence 44
No 298
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.51 E-value=0.96 Score=36.55 Aligned_cols=105 Identities=12% Similarity=0.161 Sum_probs=66.3
Q ss_pred hhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 018782 37 KHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERK---CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPD 113 (350)
Q Consensus 37 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 113 (350)
..+.+.+..+...++..-....+++.++..+-++.... ..|+... .+.++.+. .-++++++.++..=++.|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence 34556666666666666666777777777776665431 1112111 12233332 2355677777777777788888
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 018782 114 AFSYSIFIHAFCEANDIHSVFRVLDSMKRY 143 (350)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (350)
.++++.+|..+.+.+++.+|.++.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888887777777666443
No 299
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.47 E-value=8 Score=34.97 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=15.0
Q ss_pred HHHHHhccCCHHHHHHHHHH
Q 018782 50 LVRGLGDVGELSEARKLFDE 69 (350)
Q Consensus 50 l~~~~~~~~~~~~a~~~~~~ 69 (350)
+...++-.|.+.+|.++|.+
T Consensus 638 lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHH
Confidence 45566777888888888865
No 300
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.32 E-value=3 Score=37.07 Aligned_cols=151 Identities=15% Similarity=0.113 Sum_probs=95.2
Q ss_pred HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782 21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG 100 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 100 (350)
.-.|+++.|..++..+.+ ...+.++..+-+.|-.++|+++- +|+.. -.....+.|+++.|.+
T Consensus 597 vmrrd~~~a~~vLp~I~k------~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~ 658 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK------EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFD 658 (794)
T ss_pred hhhccccccccccccCch------hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHH
Confidence 446777777776555442 33455666666777776666542 22222 1233456788888887
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 018782 101 MLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180 (350)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 180 (350)
+..+.. +..-|..|..+....+++..|.+.|..... |..|+-.+...|+.+....+-....+.|.
T Consensus 659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 766652 455688888888888888888888876654 33566667777777766666666666653
Q ss_pred CCCHHHHHHHHHHHhcccCHHHHHHHHHHH
Q 018782 181 NPDEWSYNAILAYHCDRAEVNMALRLITRM 210 (350)
Q Consensus 181 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 210 (350)
. +. ...+|...|+++++.+++..-
T Consensus 724 ~-N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 N-NL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c-ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 2 22 233455678888888777543
No 301
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.03 E-value=7.9 Score=33.94 Aligned_cols=96 Identities=13% Similarity=0.152 Sum_probs=49.2
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018782 112 PDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAIL 191 (350)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 191 (350)
.|.....+++..+..+..+.-...+..+|...| .+...|..++.+|... ..+.-..+++++.+.... |...-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 344455555666665555566666666665544 4555566666666555 445555556555554332 222222222
Q ss_pred HHHhcccCHHHHHHHHHHHHh
Q 018782 192 AYHCDRAEVNMALRLITRMTK 212 (350)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~ 212 (350)
. +....+.+.+..+|..+..
T Consensus 140 ~-~yEkik~sk~a~~f~Ka~y 159 (711)
T COG1747 140 D-KYEKIKKSKAAEFFGKALY 159 (711)
T ss_pred H-HHHHhchhhHHHHHHHHHH
Confidence 2 2223555555555555443
No 302
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.00 E-value=13 Score=36.27 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhccC--CHHHHHHHHHHHHh
Q 018782 45 KTYSILVRGLGDVG--ELSEARKLFDEMLE 72 (350)
Q Consensus 45 ~~~~~l~~~~~~~~--~~~~a~~~~~~~~~ 72 (350)
.....++..|.+.+ .++.++....++..
T Consensus 791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 791 KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 44455666666665 56666665555553
No 303
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.88 E-value=1.7 Score=33.31 Aligned_cols=77 Identities=12% Similarity=0.049 Sum_probs=48.9
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHH
Q 018782 12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERK--CPVDILAHNSLLEA 88 (350)
Q Consensus 12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 88 (350)
|.+..++.+.+.+++++++...+.-.+..|.+...-..++..++-.|++++|..-++-.-... ..+-...|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344556666777777777777776655556667777777777777777777776665544331 22344556655554
No 304
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.88 E-value=7 Score=32.95 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=32.2
Q ss_pred HHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 018782 17 LHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLE 72 (350)
Q Consensus 17 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 72 (350)
..+.-+.|+++...+........ .++...+..+... ..++++++...++....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~-~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED-SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC-ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45667788888855555554432 1234444444433 77888888888777654
No 305
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.73 E-value=4.4 Score=30.70 Aligned_cols=80 Identities=11% Similarity=0.029 Sum_probs=58.4
Q ss_pred HHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHcCCC
Q 018782 229 LVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE---GIPPYSSTVEMLRNRLVGLGF 305 (350)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~ 305 (350)
+.+.|+ +.|.+.|-.+...+.--++.....+.. |... .+.+++..++-+..+. +-.+|+..+.+|+..+.+.|+
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~k-rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTK-RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHc-cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 344444 678888888877665555555555554 4445 7999999999888754 236789999999999999999
Q ss_pred hhHHHH
Q 018782 306 LDIIEI 311 (350)
Q Consensus 306 ~~~a~~ 311 (350)
++.|--
T Consensus 194 ~e~AYi 199 (203)
T PF11207_consen 194 YEQAYI 199 (203)
T ss_pred hhhhhh
Confidence 988753
No 306
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.71 E-value=0.27 Score=24.43 Aligned_cols=26 Identities=15% Similarity=0.022 Sum_probs=14.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhccC
Q 018782 295 MLRNRLVGLGFLDIIEILADKMERST 320 (350)
Q Consensus 295 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 320 (350)
.+..++.+.|++++|.+.|+++...-
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 44455555566666666666555443
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.59 E-value=0.53 Score=24.91 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=12.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHH
Q 018782 46 TYSILVRGLGDVGELSEARKLFDEML 71 (350)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~~~ 71 (350)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44445555555555555555554443
No 308
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.57 E-value=11 Score=34.73 Aligned_cols=181 Identities=14% Similarity=0.192 Sum_probs=106.0
Q ss_pred HHHHHHHhhhcC--CCC--HHHHHHHHHHHh-ccCCHHHHHHHHHHHHhcCCCCCHH-----HHHHHHHHHHhcCCHHHH
Q 018782 29 AHQFFDNAKHEF--TPT--VKTYSILVRGLG-DVGELSEARKLFDEMLERKCPVDIL-----AHNSLLEAMCKAGNIDEA 98 (350)
Q Consensus 29 a~~~~~~~~~~~--~~~--~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a 98 (350)
|++.++.+.+.. +|. ..++..+...+. ...+++.|+..+++.....-.++.. +-..++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 455555554333 332 345666777776 6789999999999875543222222 2234566666666655 8
Q ss_pred HHHHHHHHhCC----CCCCHhhHHHH-HHHHHhcCCHhHHHHHHHHHhhCC---CCccHHHHHHHHHHHH--ccCCHHHH
Q 018782 99 HGMLREMRSIG----AEPDAFSYSIF-IHAFCEANDIHSVFRVLDSMKRYN---LVPNVFTYNCIIRKLC--KNEKVEEA 168 (350)
Q Consensus 99 ~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~~a 168 (350)
...+++.++.- ..+-...|..+ +..+...++...|.+.++.+.... ..|...++-.++.+.. +.+.++++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 88888876531 11222334443 333334479999999998875432 2444555555555543 45667778
Q ss_pred HHHHHHHHHcCC---------CCCHHHHHHHHHHHh--cccCHHHHHHHHHHH
Q 018782 169 YQLLDEMIERGA---------NPDEWSYNAILAYHC--DRAEVNMALRLITRM 210 (350)
Q Consensus 169 ~~~~~~~~~~~~---------~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~ 210 (350)
.+.+..+..... .|...+|..++..++ ..|+++.+...++.+
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888877643222 235566777776655 567766666555544
No 309
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.55 E-value=0.73 Score=23.00 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782 221 TYNMVLKLLVRVGRFDRATEVWESMEK 247 (350)
Q Consensus 221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 247 (350)
.+..+..++...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555666666666666665554
No 310
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.33 E-value=3.3 Score=31.36 Aligned_cols=42 Identities=7% Similarity=0.202 Sum_probs=18.3
Q ss_pred ccCHHHHHHHHHHHHhC---CCCCChhHHHHHHHHHHHcCCHhHH
Q 018782 197 RAEVNMALRLITRMTKE---NVMPDRHTYNMVLKLLVRVGRFDRA 238 (350)
Q Consensus 197 ~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 238 (350)
..+.+++..++....+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 33444444444443332 1133444444455554444444444
No 311
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.11 E-value=0.63 Score=25.34 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=18.8
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhccC
Q 018782 295 MLRNRLVGLGFLDIIEILADKMERST 320 (350)
Q Consensus 295 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 320 (350)
.+.++|...|+.+.|.++++++...+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46677777788888888777777543
No 312
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.04 E-value=13 Score=34.36 Aligned_cols=59 Identities=5% Similarity=0.176 Sum_probs=41.4
Q ss_pred HHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC-------HHHHHHHHHHHHhc
Q 018782 15 QLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGE-------LSEARKLFDEMLER 73 (350)
Q Consensus 15 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~ 73 (350)
.+|-.|.+.|++++|.++..............+...+..|....+ -+....-|++....
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 567778899999999999977777777777888888888876532 23455555555544
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.70 E-value=0.9 Score=23.97 Aligned_cols=27 Identities=33% Similarity=0.326 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018782 80 LAHNSLLEAMCKAGNIDEAHGMLREMR 106 (350)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~ 106 (350)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 355566666666666666666666654
No 314
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=90.47 E-value=3.5 Score=26.94 Aligned_cols=63 Identities=14% Similarity=0.232 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782 199 EVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVH 262 (350)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 262 (350)
+.-++.+-+..+....+.|++....+.+++|.+.+++..|.++++..+.. ...+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 33445556666666667777777777788888888888888887777632 1113345555544
No 315
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.45 E-value=0.5 Score=23.39 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=11.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhc
Q 018782 50 LVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 50 l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
+..++.+.|++++|.+.|+++++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 344444455555555555554443
No 316
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=90.40 E-value=6.8 Score=30.17 Aligned_cols=183 Identities=15% Similarity=0.090 Sum_probs=97.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 018782 57 VGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRV 136 (350)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 136 (350)
.|-+.-|.--|.+.....+. -+.+||-|.--+...|+++.|.+.|+...+....-+-...|- .-.+--.|+++.|.+-
T Consensus 78 lGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHH
Confidence 34444455555555544222 466788888888888888888888888877543222222222 2223345778888777
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHH-HHhcccCHHHHHHHHHHHHhCC
Q 018782 137 LDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLL-DEMIERGANPDEWSYNAILA-YHCDRAEVNMALRLITRMTKEN 214 (350)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~ 214 (350)
+-+.-+.. |+..--...+-.--..-++.+|..-+ ++..+. |..-|...|- .|...=..+ .+++.+....
T Consensus 156 ~~~fYQ~D--~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a 226 (297)
T COG4785 156 LLAFYQDD--PNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEE---TLMERLKADA 226 (297)
T ss_pred HHHHHhcC--CCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHH---HHHHHHHhhc
Confidence 76665543 22111111222222334555555433 333332 4344443332 222221222 2233332221
Q ss_pred C------CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC
Q 018782 215 V------MPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGF 250 (350)
Q Consensus 215 ~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 250 (350)
- ..=..||-.+.+.+...|+.++|..+|+-.+...+
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 1 01136788899999999999999999998886533
No 317
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=90.38 E-value=4.6 Score=29.99 Aligned_cols=96 Identities=13% Similarity=0.065 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHH-------HHhcCCCCCHHHHHHHHHHHHhcCC-
Q 018782 26 VKVAHQFFDNAKHEFTPTVKTYSILVRGLGDV---GELSEARKLFDE-------MLERKCPVDILAHNSLLEAMCKAGN- 94 (350)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~- 94 (350)
|+.|.+.++..-...|.+...++.-..++... ....++.+++++ .+..++. ...++..+..++...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN-KHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhh
Confidence 45566666655455677777666555555433 333344444444 3333222 33555556555554322
Q ss_pred ----------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 018782 95 ----------IDEAHGMLREMRSIGAEPDAFSYSIFIHAF 124 (350)
Q Consensus 95 ----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (350)
+++|.+.|++..+ ..|+...|+.-+...
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 3444444444444 346666666555554
No 318
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.29 E-value=0.52 Score=22.15 Aligned_cols=23 Identities=26% Similarity=0.112 Sum_probs=16.7
Q ss_pred HHHHHHHHHHcCCChhHHHHHHH
Q 018782 292 TVEMLRNRLVGLGFLDIIEILAD 314 (350)
Q Consensus 292 ~~~~l~~~~~~~g~~~~a~~~~~ 314 (350)
....+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34566777788888888877765
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.23 E-value=10 Score=31.94 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=31.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782 51 VRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 107 (350)
+.+.-+.|+++...+........ .++...+..+... ..++++++....+....
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 45566778888755555544432 2244445544433 77888888877777764
No 320
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.08 E-value=0.83 Score=37.37 Aligned_cols=90 Identities=16% Similarity=0.022 Sum_probs=60.5
Q ss_pred HHHhcccCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCc
Q 018782 192 AYHCDRAEVNMALRLITRMTKENVMP-DRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGK 270 (350)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 270 (350)
.-|.+.|.+++|+..|...... .| |..++..-..+|.+...+..|+.-.......+- .-...|..-..+-. ..|+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~-~Lg~ 180 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARE-SLGN 180 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHH-HHhh
Confidence 4588999999999999887764 34 778888888899999999988888877765410 01223333333322 2266
Q ss_pred HHHHHHHHHHHHhCC
Q 018782 271 LEEACKYFEMMVDEG 285 (350)
Q Consensus 271 ~~~a~~~~~~~~~~~ 285 (350)
..+|.+-++..++..
T Consensus 181 ~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 181 NMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHhHHHHHhhC
Confidence 666666666666543
No 321
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.06 E-value=7.8 Score=30.32 Aligned_cols=82 Identities=15% Similarity=0.119 Sum_probs=36.3
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHHcCCHhH
Q 018782 160 CKNEKVEEAYQLLDEMIERGANPDE-WSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRH-TYNMVLKLLVRVGRFDR 237 (350)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~ 237 (350)
.....++.|...|.+.+.. .|+. .-|+.-+..+.+..+++.+..--.+.++ +.||.. ....+..++.....++.
T Consensus 21 f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccH
Confidence 3344455555555444443 3333 2233334444445555555544444444 223322 12223344444555555
Q ss_pred HHHHHHHH
Q 018782 238 ATEVWESM 245 (350)
Q Consensus 238 a~~~~~~~ 245 (350)
|...+.+.
T Consensus 97 aI~~Lqra 104 (284)
T KOG4642|consen 97 AIKVLQRA 104 (284)
T ss_pred HHHHHHHH
Confidence 55555554
No 322
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.77 E-value=6.4 Score=29.86 Aligned_cols=92 Identities=12% Similarity=0.068 Sum_probs=62.4
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 018782 52 RGLGDVGELSEARKLFDEMLERKCPVD----ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEA 127 (350)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (350)
.-+...|++++|..-|...+..-.+.. ...|..-..++.+.+.++.|+.--...++.+. .......--..+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhh
Confidence 344577888888888888887632222 23344445677888888888888888877642 1222333345678888
Q ss_pred CCHhHHHHHHHHHhhCC
Q 018782 128 NDIHSVFRVLDSMKRYN 144 (350)
Q Consensus 128 ~~~~~a~~~~~~~~~~~ 144 (350)
..++.|+.-|+++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88888888888887754
No 323
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.54 E-value=0.18 Score=36.16 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=19.2
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018782 54 LGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML 102 (350)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 102 (350)
+.+.+.+.....+++.+...+...+...++.++..|++.++.+...+++
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 17 FEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp CTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 3333444444444444443333333444444444444443333333333
No 324
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.43 E-value=14 Score=32.26 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=72.5
Q ss_pred hcCCHhHHHH-HHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHH
Q 018782 126 EANDIHSVFR-VLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMAL 204 (350)
Q Consensus 126 ~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 204 (350)
..||+-.|.+ ++..+....-.|+.....+ ..+...|+++.+...+....+. +.....+..++++.....++++.|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3455555543 3333333322344333322 3455678888888877765543 2335667777888888888888888
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782 205 RLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR 248 (350)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 248 (350)
..-..|....+. +++......-..-..|-++++...|+++...
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 888877776553 4454444444445567778888888877654
No 325
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.34 E-value=0.16 Score=36.48 Aligned_cols=85 Identities=12% Similarity=0.230 Sum_probs=46.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 018782 155 IIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGR 234 (350)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 234 (350)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++. .+..-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 3455555666666666666666554444566666666666666655665555541 111222345555666666
Q ss_pred HhHHHHHHHHHH
Q 018782 235 FDRATEVWESME 246 (350)
Q Consensus 235 ~~~a~~~~~~~~ 246 (350)
+++|.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 666666555543
No 326
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.25 E-value=7.2 Score=28.82 Aligned_cols=135 Identities=14% Similarity=0.118 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhH-HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH-HHHHHH
Q 018782 184 EWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHT-YNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVS-TYSVMV 261 (350)
Q Consensus 184 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~ll 261 (350)
...|...+. +.+.+..++|+.-|..+.+.|...-+.. .-.......+.|+-..|...|+++-.....|-.. -...+-
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344544444 3455666777777777766654321111 1122234456677777777777776543344332 111121
Q ss_pred HHH-hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782 262 HGL-CKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 262 ~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
.+| ....|.++......+-+...+-+.....-..|.-+-.+.|++..|..+|..+-..
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 121 2234777777777776665553444555667777777888888888888877653
No 327
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.23 E-value=4.2 Score=33.54 Aligned_cols=93 Identities=13% Similarity=0.055 Sum_probs=66.9
Q ss_pred HHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 018782 18 HALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDE 97 (350)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 97 (350)
.-|.++|.+++|+..|.......|.|+.++..-..+|.+..++..|+.-....+..+- .-...|..-+.+--..|...+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHHH
Confidence 4567899999999999998877788999999999999999999888877776655421 123344444444445566777
Q ss_pred HHHHHHHHHhCCCCCC
Q 018782 98 AHGMLREMRSIGAEPD 113 (350)
Q Consensus 98 a~~~~~~~~~~~~~~~ 113 (350)
|.+-++..+.. +|+
T Consensus 184 AKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 184 AKKDCETVLAL--EPK 197 (536)
T ss_pred HHHhHHHHHhh--Ccc
Confidence 77777777663 455
No 328
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=89.07 E-value=11 Score=30.47 Aligned_cols=122 Identities=14% Similarity=0.077 Sum_probs=60.6
Q ss_pred hcccCHHHHHHHHHHHHhCCCCCChh-------HHHHHHHHHHHcCCHhHHHHHHHHHH----hcCCCCCHHHHHHHHHH
Q 018782 195 CDRAEVNMALRLITRMTKENVMPDRH-------TYNMVLKLLVRVGRFDRATEVWESME----KRGFYPSVSTYSVMVHG 263 (350)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~p~~~~~~~ll~~ 263 (350)
.+.+++++|+..+.++...|+..+.. +...+.+.|...|++..-.+...... +..-.-......+++..
T Consensus 14 v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiek 93 (421)
T COG5159 14 VKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEK 93 (421)
T ss_pred hhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHh
Confidence 34445555555555555544433322 23345555555555544444332222 11111223344555555
Q ss_pred HhhccCcHHHHHHHHHHHHhCCCCCCHHH-----HHHHHHHHHcCCChhHHHHHHHHh
Q 018782 264 LCKKKGKLEEACKYFEMMVDEGIPPYSST-----VEMLRNRLVGLGFLDIIEILADKM 316 (350)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~a~~~~~~~ 316 (350)
+-.....++.-+++....++...+.+... =..++.++.+.|.+.+|..+...+
T Consensus 94 f~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 94 FPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 54444556666666666555432222222 234567788888888888765544
No 329
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.99 E-value=6.4 Score=35.20 Aligned_cols=178 Identities=8% Similarity=0.076 Sum_probs=115.5
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 018782 55 GDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVF 134 (350)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 134 (350)
.-.|+++.|..++..+. ....+.++..+.+.|..++|+++ .+|+... .....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHH
Confidence 44577787777655443 23445667777788887777653 3333322 23345678999888
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC
Q 018782 135 RVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN 214 (350)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 214 (350)
++..+. .+..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+.+....+-....+.|
T Consensus 658 ~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 876554 3567799999999999999999999877653 4456666777788777777777777666
Q ss_pred CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 018782 215 VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEM 280 (350)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 280 (350)
. .| ...-+|...|+++++.+++.+-.. .|.. ..+.+.|+- .+..+...++++
T Consensus 723 ~-~N-----~AF~~~~l~g~~~~C~~lLi~t~r---~peA---al~ArtYlp--s~vs~iv~~wk~ 774 (794)
T KOG0276|consen 723 K-NN-----LAFLAYFLSGDYEECLELLISTQR---LPEA---ALFARTYLP--SQVSRIVELWKE 774 (794)
T ss_pred c-cc-----hHHHHHHHcCCHHHHHHHHHhcCc---CcHH---HHHHhhhCh--HHHHHHHHHHHH
Confidence 3 33 233466778999999998876543 2322 222333332 345555555554
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.98 E-value=0.92 Score=22.69 Aligned_cols=29 Identities=14% Similarity=-0.095 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782 291 STVEMLRNRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 291 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
.+|..+...+...|++++|...|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34566677777777777777777776554
No 331
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.47 E-value=1.4 Score=23.99 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=14.8
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhc
Q 018782 225 VLKLLVRVGRFDRATEVWESMEKR 248 (350)
Q Consensus 225 l~~~~~~~~~~~~a~~~~~~~~~~ 248 (350)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666543
No 332
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.33 E-value=11 Score=30.35 Aligned_cols=87 Identities=9% Similarity=0.104 Sum_probs=51.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHH-----
Q 018782 86 LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLC----- 160 (350)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 160 (350)
|.+++..++|.+++...-+.-+.--+.-......-|-.|.+.++...+.++-..-.+..-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 677777888888777665554322122233455556667777887777777666544321223334655554443
Q ss_pred ccCCHHHHHHHH
Q 018782 161 KNEKVEEAYQLL 172 (350)
Q Consensus 161 ~~g~~~~a~~~~ 172 (350)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 467788887766
No 333
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=88.19 E-value=12 Score=30.20 Aligned_cols=138 Identities=13% Similarity=0.125 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhc-cc-CHHHHHHHHHHHHhC-CCCCChhHHHHHHHHHHHcCCHhHHH
Q 018782 164 KVEEAYQLLDEMIE-RGANPDEWSYNAILAYHCD-RA-EVNMALRLITRMTKE-NVMPDRHTYNMVLKLLVRVGRFDRAT 239 (350)
Q Consensus 164 ~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 239 (350)
..-+|+.+|+.... ..+-.|..+...+++.... .+ ....-.++.+.+... +-.++..+...++..++..++|.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663221 2234467777777777664 22 222233333333332 34567777788888888888888888
Q ss_pred HHHHHHHhc-CCCCCHHHHHHHHHHHhhccCcHHHHHHHHHH-----HHhCCCCCCHHHHHHHHHHHHc
Q 018782 240 EVWESMEKR-GFYPSVSTYSVMVHGLCKKKGKLEEACKYFEM-----MVDEGIPPYSSTVEMLRNRLVG 302 (350)
Q Consensus 240 ~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~ 302 (350)
++|...... +..-|...|...|...... |+..-..++..+ +.+.+++.+...-..+-+.+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~s-gD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVES-GDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHc-CCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 888887754 5566778888888887766 888777776665 2455666666666665555443
No 334
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=88.12 E-value=10 Score=30.49 Aligned_cols=87 Identities=5% Similarity=-0.030 Sum_probs=42.9
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----
Q 018782 51 VRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE---- 126 (350)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 126 (350)
|.+++..+++.+++...-+--+.--+..+.....-|-.|.+.+++..+.++-..-....-..+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5566666666666555544332211122333344444466666666666665555543222222235555444433
Q ss_pred -cCCHhHHHHHH
Q 018782 127 -ANDIHSVFRVL 137 (350)
Q Consensus 127 -~~~~~~a~~~~ 137 (350)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666655
No 335
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.75 E-value=8.1 Score=34.50 Aligned_cols=89 Identities=12% Similarity=0.124 Sum_probs=43.1
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 018782 54 LGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSV 133 (350)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 133 (350)
+.-.|+...|.+-+.......+.-.-.....|.....+.|....|..++.+.+... ...+.++..+..++....++++|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 33445555555555444332221122223334444555555555555555555443 23334455555555556666666
Q ss_pred HHHHHHHhhC
Q 018782 134 FRVLDSMKRY 143 (350)
Q Consensus 134 ~~~~~~~~~~ 143 (350)
++.|++..+.
T Consensus 696 ~~~~~~a~~~ 705 (886)
T KOG4507|consen 696 LEAFRQALKL 705 (886)
T ss_pred HHHHHHHHhc
Confidence 6666555543
No 336
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.61 E-value=6.2 Score=26.04 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018782 25 HVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 104 (350)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 104 (350)
..++|..+-+.+.........+-..-+..+...|++++|..+.+.+ ..||...|..|.. .+.|..+.+..-+.+
T Consensus 20 cHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 20 CHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 4567777777665432112222222334556777888887776655 3567777666543 356666666666666
Q ss_pred HHhCCCCCCHhhH
Q 018782 105 MRSIGAEPDAFSY 117 (350)
Q Consensus 105 ~~~~~~~~~~~~~ 117 (350)
+...| .|....|
T Consensus 94 la~sg-~p~lq~F 105 (115)
T TIGR02508 94 LAASG-DPRLQTF 105 (115)
T ss_pred HHhCC-CHHHHHH
Confidence 66665 3444444
No 337
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=87.27 E-value=6.5 Score=30.29 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018782 118 SIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIE 177 (350)
Q Consensus 118 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (350)
+.-++.+.+.+.+.+++...++-.+.. +.+...-..+++.++-.|++++|..-++-.-+
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~ 63 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT 63 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh
Confidence 334455555566666666665555443 33444555556666666666666655554443
No 338
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.20 E-value=2.5 Score=21.03 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782 81 AHNSLLEAMCKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 107 (350)
+|..+...+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444555555555555555555443
No 339
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.50 E-value=30 Score=32.80 Aligned_cols=194 Identities=14% Similarity=0.080 Sum_probs=105.9
Q ss_pred HhcCCHhHHHHHHHHHhhCCCCcc----H---HHHHHHH-HHHHccCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 018782 125 CEANDIHSVFRVLDSMKRYNLVPN----V---FTYNCII-RKLCKNEKVEEAYQLLDEMIER----GANPDEWSYNAILA 192 (350)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~~~~~~----~---~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~ll~ 192 (350)
....++.+|..+..++...-..|+ . ..++.+- ......|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 345778888888877754321221 1 1233332 2334578899999988887654 12234455666667
Q ss_pred HHhcccCHHHHHHHHHHHHhCCCCCChhHH---HHH--HHHHHHcCC--HhHHHHHHHHHHhc-----CC-CCCHHHHHH
Q 018782 193 YHCDRAEVNMALRLITRMTKENVMPDRHTY---NMV--LKLLVRVGR--FDRATEVWESMEKR-----GF-YPSVSTYSV 259 (350)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l--~~~~~~~~~--~~~a~~~~~~~~~~-----~~-~p~~~~~~~ 259 (350)
+..-.|++++|..+.....+..-.-+...+ ..+ ...+...|+ +.+....|...... +. .+-......
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 777789999999888776554222233322 222 233455663 33333333333221 00 122344555
Q ss_pred HHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782 260 MVHGLCKKKGKLEEACKYFEMMVDEGIPPYSS--TVEMLRNRLVGLGFLDIIEILADKMER 318 (350)
Q Consensus 260 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~ 318 (350)
++.++.+..+...++..-+.-.......|-.. .+..+++.....|+.++|...+.++..
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 55555544444445554444443333222112 223677888889999999988888764
No 340
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.43 E-value=10 Score=27.27 Aligned_cols=53 Identities=15% Similarity=0.151 Sum_probs=34.9
Q ss_pred hcccCHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHHcCCHhHHHHHHHHHHhcC
Q 018782 195 CDRAEVNMALRLITRMTKENVMPDRH-TYNMVLKLLVRVGRFDRATEVWESMEKRG 249 (350)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 249 (350)
...++++.+..++..+.-. .|+.. .-..-...+...|+|.+|.++|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4577888888888887764 33322 22223345567888888888888888753
No 341
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.12 E-value=17 Score=29.53 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 018782 84 SLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSM 140 (350)
Q Consensus 84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 140 (350)
.....|..+|.+.+|.++-++.+... +.+...+-.++..+...||--.+.+.++.+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 33445555555555555555555542 334445555555555555554454444444
No 342
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.97 E-value=29 Score=32.13 Aligned_cols=61 Identities=13% Similarity=0.001 Sum_probs=37.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHhC
Q 018782 47 YSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGN-------IDEAHGMLREMRSI 108 (350)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~ 108 (350)
.=.++..|.++|.+++|.++.....+. .......+...+..|....+ -+....-|++....
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 345777888999999999999665544 33345566667777765432 23555555555544
No 343
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=85.57 E-value=3.4 Score=28.49 Aligned_cols=79 Identities=11% Similarity=0.256 Sum_probs=50.5
Q ss_pred CHhhHHHHHHHHHccCChH--HHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVK--VAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSL 85 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (350)
+.+-|+.--.-|.....+| +..+-++.+.. ...|++.+....++++.+.+++..|.++|+-++.+ ..+....|-.+
T Consensus 46 t~EEfd~ry~~yf~r~~iD~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~ 124 (149)
T KOG4077|consen 46 TAEEFDARYEKYFNRPEIDGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYY 124 (149)
T ss_pred cHHHHHHHHHHHcCcccchHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHH
Confidence 3444544444444433222 45555555554 67888999999999999999999999999888765 33333456555
Q ss_pred HHH
Q 018782 86 LEA 88 (350)
Q Consensus 86 ~~~ 88 (350)
+.-
T Consensus 125 v~e 127 (149)
T KOG4077|consen 125 VKE 127 (149)
T ss_pred HHH
Confidence 543
No 344
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=85.42 E-value=26 Score=31.03 Aligned_cols=181 Identities=10% Similarity=0.092 Sum_probs=127.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHH
Q 018782 75 CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNC 154 (350)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (350)
.+.|.....+++..+..+..+.-+..+-.+|...| -+...+..++.+|... ..+.-..+|+++.+..+. |+..-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 34577778889999999999999999999999865 4677889999999988 667888999999887632 4444444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHhcccCHHHHHHHHHHHHhC-CCCCChhHHHHHHHH
Q 018782 155 IIRKLCKNEKVEEAYQLLDEMIERGANP-----DEWSYNAILAYHCDRAEVNMALRLITRMTKE-NVMPDRHTYNMVLKL 228 (350)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 228 (350)
|..-|-+ ++.+.+...|.++...-++. -...|.-+... -..+.+..+.+...+... |...-...+..+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 5555544 88899999998887653321 12345555442 245677777777776554 333344566666678
Q ss_pred HHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 229 LVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHG 263 (350)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 263 (350)
|....++.+|.+++..+.+..-+ |...-..++..
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 88888999999999988876332 44444455544
No 345
>PRK09687 putative lyase; Provisional
Probab=85.02 E-value=19 Score=29.31 Aligned_cols=236 Identities=11% Similarity=0.006 Sum_probs=147.8
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHhh
Q 018782 41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI----DEAHGMLREMRSIGAEPDAFS 116 (350)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 116 (350)
.++.......+.++...|.. .+...+..+... ++...-...+.++...|+. .++...+..+... .++...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 35677777788888877753 344444445443 3666666777777777763 5678888777443 355555
Q ss_pred HHHHHHHHHhcCC-----HhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 018782 117 YSIFIHAFCEAND-----IHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAIL 191 (350)
Q Consensus 117 ~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 191 (350)
-...+.++...+. ...+...+..... .++..+-...+.++.+.++. .+...+-.+.+. ++...-...+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHH
Confidence 5555555554432 1233344433333 34667777888888888874 566666666653 3555555566
Q ss_pred HHHhccc-CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCc
Q 018782 192 AYHCDRA-EVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGK 270 (350)
Q Consensus 192 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 270 (350)
.++.+.+ +.+.+...+..+.. .++..+-...+.++.+.++. .|...+-...+.+ +. ....+.++... |.
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~~--~~~a~~ALg~i-g~ 250 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---TV--GDLIIEAAGEL-GD 250 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---ch--HHHHHHHHHhc-CC
Confidence 6666543 24456666666664 35777778888888888884 5555555555542 22 33556666555 66
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 018782 271 LEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG 302 (350)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (350)
. +|+..+..+.+.. ||..+....+.++.+
T Consensus 251 ~-~a~p~L~~l~~~~--~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 251 K-TLLPVLDTLLYKF--DDNEIITKAIDKLKR 279 (280)
T ss_pred H-hHHHHHHHHHhhC--CChhHHHHHHHHHhc
Confidence 4 7899999888754 588888777777654
No 346
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.53 E-value=11 Score=26.10 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782 272 EEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
-+..+-++.+...++-|++.+....+++|.+.+|+..|.++|+-++.+
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 345566667777788889999999999999999999999999888765
No 347
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=83.86 E-value=36 Score=31.50 Aligned_cols=162 Identities=14% Similarity=0.176 Sum_probs=94.3
Q ss_pred HHHHHHHHH-ccCChHHHHHHHHHhhhcC-CCCH-----HHHHHHHHHHhccCCHHHHHHHHHHHHhcC----CCCCHHH
Q 018782 13 LDQLLHALC-KRKHVKVAHQFFDNAKHEF-TPTV-----KTYSILVRGLGDVGELSEARKLFDEMLERK----CPVDILA 81 (350)
Q Consensus 13 ~~~l~~~~~-~~g~~~~a~~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~ 81 (350)
+-.+...+. ...+++.|...+++..... .++. .....++..+.+.+... |...+++.++.- ..+-...
T Consensus 62 ~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~ 140 (608)
T PF10345_consen 62 RLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYA 140 (608)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHH
Confidence 344555554 6789999999999864421 1221 22345566776666666 999998876541 1122223
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHH--hcCCHhHHHHHHHHHhhCC---------CC
Q 018782 82 HNSL-LEAMCKAGNIDEAHGMLREMRSIG---AEPDAFSYSIFIHAFC--EANDIHSVFRVLDSMKRYN---------LV 146 (350)
Q Consensus 82 ~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~---------~~ 146 (350)
|..+ +..+...+++..|.+.++.+...- ..|....+..++.+.. +.+..+++.+..+.+.... ..
T Consensus 141 frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~ 220 (608)
T PF10345_consen 141 FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHI 220 (608)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCc
Confidence 3333 233333479999999999887532 2333444445555443 3455566666666553211 23
Q ss_pred ccHHHHHHHHHHH--HccCCHHHHHHHHHHH
Q 018782 147 PNVFTYNCIIRKL--CKNEKVEEAYQLLDEM 175 (350)
Q Consensus 147 ~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~ 175 (350)
|...+|..+++.+ ...|++..+...++++
T Consensus 221 ~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 221 PQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777777654 4577777776666555
No 348
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=83.78 E-value=14 Score=26.54 Aligned_cols=89 Identities=10% Similarity=0.082 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHhhHH
Q 018782 45 KTYSILVRGLGDVGELSEARKLFDEMLERKC-----PVDILAHNSLLEAMCKAGN-IDEAHGMLREMRSIGAEPDAFSYS 118 (350)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~ 118 (350)
...+.++...+..+++.....+++.+..... ..+...|+.++.+...... ---+..+|..+.+.+.++++.-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3456677777777777777777777643211 2367788899988876665 456778888888877888999999
Q ss_pred HHHHHHHhcCCHhHH
Q 018782 119 IFIHAFCEANDIHSV 133 (350)
Q Consensus 119 ~l~~~~~~~~~~~~a 133 (350)
.++.++.+....+..
T Consensus 120 ~li~~~l~g~~~~~~ 134 (145)
T PF13762_consen 120 CLIKAALRGYFHDSL 134 (145)
T ss_pred HHHHHHHcCCCCcch
Confidence 999988776444443
No 349
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.61 E-value=16 Score=27.25 Aligned_cols=41 Identities=17% Similarity=0.303 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782 200 VNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR 248 (350)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 248 (350)
+++|...|+.... ..|+..+|+.-+.... +|-++..++.+.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 3444444554444 3456666665555442 344444444443
No 350
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.21 E-value=2.3 Score=20.11 Aligned_cols=26 Identities=23% Similarity=0.082 Sum_probs=14.2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782 293 VEMLRNRLVGLGFLDIIEILADKMER 318 (350)
Q Consensus 293 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 318 (350)
+..+...+...|+++.|...+++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44455555555566666655555543
No 351
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=83.11 E-value=21 Score=28.12 Aligned_cols=119 Identities=13% Similarity=-0.020 Sum_probs=71.8
Q ss_pred HHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 018782 19 ALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD-ILAHNSLLEAMCKAGNIDE 97 (350)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 97 (350)
-|.....++.|..-|.+.....|..+..|+.-+.++.+..+++.+..--.+.++. .|+ +.....+..+......+++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccH
Confidence 3444556777777777766555555567777777888888888877777766664 233 3445556667777788888
Q ss_pred HHHHHHHHHhC----CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 018782 98 AHGMLREMRSI----GAEPDAFSYSIFIHAFCEANDIHSVFRVLDS 139 (350)
Q Consensus 98 a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 139 (350)
|+..+.+..+. .+.+-......|..+--..-...+..++.+.
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 88888877432 2333333444444443333333444444433
No 352
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.07 E-value=22 Score=28.47 Aligned_cols=208 Identities=10% Similarity=0.108 Sum_probs=124.5
Q ss_pred CCCCCHhhHHHHHHH-HHhcCCHhHHHHHHHHHhhCCCCccH---HHHHHHHHHHHccCCHHHHHHHHHHHHHc-----C
Q 018782 109 GAEPDAFSYSIFIHA-FCEANDIHSVFRVLDSMKRYNLVPNV---FTYNCIIRKLCKNEKVEEAYQLLDEMIER-----G 179 (350)
Q Consensus 109 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~ 179 (350)
+-+||+..=+..-.+ -.+..+.++|+.-|++..+....... .+.-.++....+.|++++..+.+.++... .
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 445665543322211 12345788999999988764322233 34456788899999999999999988642 1
Q ss_pred CCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC-CCCCCh----hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC----
Q 018782 180 ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE-NVMPDR----HTYNMVLKLLVRVGRFDRATEVWESMEKRGF---- 250 (350)
Q Consensus 180 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 250 (350)
..-+..+.++++.......+.+....+++.-.+. .-..+. .|-+.|...|...+++.+..++++++...--
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 1235566788888777777777777777664332 001122 2335677888888999999999888864311
Q ss_pred CCC-------HHHHHHHHHHHhhccCcHHHHHHHHHHHHhC-CCCCCHHHHHHHHH----HHHcCCChhHHHHHHHHhh
Q 018782 251 YPS-------VSTYSVMVHGLCKKKGKLEEACKYFEMMVDE-GIPPYSSTVEMLRN----RLVGLGFLDIIEILADKME 317 (350)
Q Consensus 251 ~p~-------~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~----~~~~~g~~~~a~~~~~~~~ 317 (350)
..| ...|..=|..|... .+-.....++++...- .--|.+.....+-. ...+.|++++|-.-|=+..
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~q-KnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQ-KNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhh-cccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 111 23556666666655 5556666667665432 23455555544322 2345566666655544443
No 353
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=82.69 E-value=29 Score=29.55 Aligned_cols=125 Identities=10% Similarity=0.010 Sum_probs=69.0
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---hcccCHHHHHHHHHHHHhCCCCCChhHH
Q 018782 146 VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYH---CDRAEVNMALRLITRMTKENVMPDRHTY 222 (350)
Q Consensus 146 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 222 (350)
+-.+.++-.+-..+...|+.+.|.+++++..-.- ..++......+ ...|... ......-|...|
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~r---------L~~~~~eNR~ff 103 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNCR---------LDYRRPENRQFF 103 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCccc---------cCCccccchHHH
Confidence 3456666667777778888888777777754210 00000000000 0000000 000111233333
Q ss_pred HH---HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 018782 223 NM---VLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVD 283 (350)
Q Consensus 223 ~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 283 (350)
.+ .+..+.+.|-+..|.++.+-+...+..-|+.....+|..|+.++++++-.+++.+....
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 33 34566777888888888888877655546666666777777777777777777776554
No 354
>PRK09687 putative lyase; Provisional
Probab=82.31 E-value=26 Score=28.63 Aligned_cols=221 Identities=12% Similarity=0.057 Sum_probs=135.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH----hHHHHHHHHHhhCCCCccHHHH
Q 018782 77 VDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDI----HSVFRVLDSMKRYNLVPNVFTY 152 (350)
Q Consensus 77 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~ 152 (350)
++.......+.++...|. ..+...+..+... +|...-...+.++...|+. .++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 366666667777776665 4444445555443 4555555666677777763 4677777766443 3677777
Q ss_pred HHHHHHHHccCCH-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 018782 153 NCIIRKLCKNEKV-----EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLK 227 (350)
Q Consensus 153 ~~l~~~~~~~g~~-----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 227 (350)
...+.++...+.. ..+...+..... .++..+-...+.++...++ +.+...+-.+.+. ++...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 7777777665432 233444433333 3366666677788877776 4566666666653 45555566666
Q ss_pred HHHHcC-CHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 018782 228 LLVRVG-RFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFL 306 (350)
Q Consensus 228 ~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 306 (350)
++.+.+ +-..+...+..+... ++...-...+.++.+. |+ ..++..+-...+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~-~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALR-KD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHcc-CC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 666543 244666666666643 4666666666676655 66 46666666666554 2 345678888888885
Q ss_pred hHHHHHHHHhhccCC
Q 018782 307 DIIEILADKMERSTS 321 (350)
Q Consensus 307 ~~a~~~~~~~~~~~~ 321 (350)
+|...+.++....+
T Consensus 252 -~a~p~L~~l~~~~~ 265 (280)
T PRK09687 252 -TLLPVLDTLLYKFD 265 (280)
T ss_pred -hHHHHHHHHHhhCC
Confidence 68888888876544
No 355
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.24 E-value=31 Score=29.51 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 018782 45 KTYSILVRGLGDVGELSEARKLFDEMLERK--CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI 108 (350)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 108 (350)
..+.-+...|..+|+++.|++.|.+..+-- .......|..+|..-...|+|.....+..+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 446677778888888888888888755431 1123455666677777778877777776666543
No 356
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.21 E-value=9.6 Score=28.98 Aligned_cols=63 Identities=14% Similarity=0.028 Sum_probs=41.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 018782 46 TYSILVRGLGDVGELSEARKLFDEMLER-KCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI 108 (350)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 108 (350)
.+...+.......+.+......+...+. ...|++.+|..++..+...|+.++|.+...++...
T Consensus 110 ~~~~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 110 YYAALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3334344444555544444433333221 23678999999999999999999999999998875
No 357
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.00 E-value=50 Score=31.77 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782 82 HNSLLEAMCKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 82 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 107 (350)
|..|+..|...|+.++|+++|....+
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 56677777777777777777777765
No 358
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.85 E-value=57 Score=32.28 Aligned_cols=83 Identities=18% Similarity=0.108 Sum_probs=43.4
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 018782 225 VLKLLVRVGRFDRATEVWESMEKRGFYPSVS--TYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG 302 (350)
Q Consensus 225 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (350)
.+.+|..+|+|.+|..+..++... -+.. +-..|...+... +++-+|-++..+..+. ....+..+++
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~-~kh~eAa~il~e~~sd--------~~~av~ll~k 1038 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQ-RKHYEAAKILLEYLSD--------PEEAVALLCK 1038 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHc-ccchhHHHHHHHHhcC--------HHHHHHHHhh
Confidence 345566666666666666555421 1111 113344443333 6666666666655332 1223345566
Q ss_pred CCChhHHHHHHHHhhcc
Q 018782 303 LGFLDIIEILADKMERS 319 (350)
Q Consensus 303 ~g~~~~a~~~~~~~~~~ 319 (350)
...|++|.++.....+.
T Consensus 1039 a~~~~eAlrva~~~~~~ 1055 (1265)
T KOG1920|consen 1039 AKEWEEALRVASKAKRD 1055 (1265)
T ss_pred HhHHHHHHHHHHhcccc
Confidence 66788888777666543
No 359
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.40 E-value=6.4 Score=27.66 Aligned_cols=27 Identities=11% Similarity=-0.103 Sum_probs=12.3
Q ss_pred HHHHHHcCCChhHHHHHHHHhhccCCC
Q 018782 296 LRNRLVGLGFLDIIEILADKMERSTSC 322 (350)
Q Consensus 296 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 322 (350)
|.-++.+.++++.+.++++.+.+..++
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 333444444444444444444444333
No 360
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.04 E-value=22 Score=26.99 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=48.9
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHH-----HHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 018782 226 LKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVM-----VHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL 300 (350)
Q Consensus 226 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (350)
...+...|++++|...++..... |....+..+ -+... ..|.+++|+..++.....++ .+.....-.+.+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~-q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQL-QQKKADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 44566667777777766665543 222222222 22222 23667777777666554432 233334445666
Q ss_pred HcCCChhHHHHHHHHhhccC
Q 018782 301 VGLGFLDIIEILADKMERST 320 (350)
Q Consensus 301 ~~~g~~~~a~~~~~~~~~~~ 320 (350)
...|+-++|..-|++....+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 67777777777777766654
No 361
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=80.36 E-value=44 Score=30.11 Aligned_cols=88 Identities=11% Similarity=0.123 Sum_probs=66.5
Q ss_pred HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHHhc-CCC-CCHHHHHHHHHHHHhcCCHHH
Q 018782 21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLG-DVGELSEARKLFDEMLER-KCP-VDILAHNSLLEAMCKAGNIDE 97 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~ 97 (350)
.+.|..+.+..+|++...++|.+...|......+. ..|+.+...+.|+..++. |.. .+...|...+..-..++++..
T Consensus 90 ~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~ 169 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR 169 (577)
T ss_pred HHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence 46788888999999988888888888888777665 457778888888887754 221 255677777777778888888
Q ss_pred HHHHHHHHHhC
Q 018782 98 AHGMLREMRSI 108 (350)
Q Consensus 98 a~~~~~~~~~~ 108 (350)
...+|++.++.
T Consensus 170 v~~iyeRilei 180 (577)
T KOG1258|consen 170 VANIYERILEI 180 (577)
T ss_pred HHHHHHHHHhh
Confidence 88888887653
No 362
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=80.01 E-value=6.9 Score=22.36 Aligned_cols=31 Identities=16% Similarity=0.014 Sum_probs=16.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhccCCCcHH
Q 018782 295 MLRNRLVGLGFLDIIEILADKMERSTSCTIQ 325 (350)
Q Consensus 295 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 325 (350)
.+.-++.+.|++++|.+..+.+.+..|.+.+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 3444555666666666666666555544433
No 363
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=79.93 E-value=22 Score=26.67 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=14.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 018782 85 LLEAMCKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 85 l~~~~~~~~~~~~a~~~~~~~~~ 107 (350)
.+-.|.+.|.+++|.+++++...
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34456667777777777766665
No 364
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.75 E-value=1.7 Score=35.69 Aligned_cols=90 Identities=17% Similarity=0.067 Sum_probs=51.8
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHhHHH
Q 018782 56 DVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDA-FSYSIFIHAFCEANDIHSVF 134 (350)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 134 (350)
..|.++.|++.|...+..+ ++....|..-.+++.+.+.+..|+.=+....+. .||. .-|-.-..+....|+|+++.
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHH
Confidence 4566777777776666653 335555555666666667766666666666653 2332 22333333444556677777
Q ss_pred HHHHHHhhCCCCcc
Q 018782 135 RVLDSMKRYNLVPN 148 (350)
Q Consensus 135 ~~~~~~~~~~~~~~ 148 (350)
+.+....+.+..+.
T Consensus 203 ~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 203 HDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHhccccHH
Confidence 77766666554433
No 365
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=79.36 E-value=23 Score=32.45 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHH
Q 018782 186 SYNAILAYHCDRAEVNMALRLITR 209 (350)
Q Consensus 186 ~~~~ll~~~~~~~~~~~a~~~~~~ 209 (350)
....++..|.+.|-.+.+.++.+.
T Consensus 407 ~~~k~l~iC~~~~L~~~a~~I~~~ 430 (566)
T PF07575_consen 407 DAEKLLEICAELGLEDVAREICKI 430 (566)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 333344444444444444444443
No 366
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.96 E-value=34 Score=27.91 Aligned_cols=53 Identities=17% Similarity=0.059 Sum_probs=45.8
Q ss_pred hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782 265 CKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER 318 (350)
Q Consensus 265 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 318 (350)
+..+|.+.+|.++.++.+..+ |.+...+..+++.+...|+--.+.+-++++.+
T Consensus 289 yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 289 YLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 345699999999999999987 88999999999999999998888887777653
No 367
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.26 E-value=52 Score=29.68 Aligned_cols=102 Identities=8% Similarity=-0.084 Sum_probs=68.1
Q ss_pred HHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHc
Q 018782 226 LKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE---GIPPYSSTVEMLRNRLVG 302 (350)
Q Consensus 226 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 302 (350)
+..+.+.|-+..|+++.+-+.+....-|+.....+|..|+.++.+++-.+++++..... ..-||...=..++..|.+
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~ 428 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLR 428 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHh
Confidence 44566788899999988888877555567777777887777778888888888876433 234555555556666665
Q ss_pred CCC---hhHHHHHHHHhhccCCCcHHHH
Q 018782 303 LGF---LDIIEILADKMERSTSCTIQEL 327 (350)
Q Consensus 303 ~g~---~~~a~~~~~~~~~~~~~~~~~~ 327 (350)
... -+.|...+.++.+..+.....+
T Consensus 429 ~~~~~~rqsa~~~l~qAl~~~P~vl~eL 456 (665)
T KOG2422|consen 429 KNEEDDRQSALNALLQALKHHPLVLSEL 456 (665)
T ss_pred cCChhhHHHHHHHHHHHHHhCcHHHHHH
Confidence 554 4566666666666544433333
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.83 E-value=8.4 Score=24.13 Aligned_cols=45 Identities=9% Similarity=0.028 Sum_probs=32.1
Q ss_pred CcHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHcCCChhHHHHHH
Q 018782 269 GKLEEACKYFEMMVDEGIPPY--SSTVEMLRNRLVGLGFLDIIEILA 313 (350)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 313 (350)
+..++|+..|....+.-..+. ..++..++.+|...|++++++++.
T Consensus 20 ~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 20 NETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred chHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888776643322 246677788888888888877654
No 369
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.70 E-value=32 Score=27.02 Aligned_cols=23 Identities=9% Similarity=0.482 Sum_probs=14.2
Q ss_pred HHHHcCCHhHHHHHHHHHHhcCC
Q 018782 228 LLVRVGRFDRATEVWESMEKRGF 250 (350)
Q Consensus 228 ~~~~~~~~~~a~~~~~~~~~~~~ 250 (350)
.-...+++.+|.++|++.....+
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455667777777777665433
No 370
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=77.04 E-value=6.8 Score=18.87 Aligned_cols=27 Identities=15% Similarity=0.365 Sum_probs=13.3
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHH
Q 018782 25 HVKVAHQFFDNAKHEFTPTVKTYSILV 51 (350)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~l~ 51 (350)
+.+.+..+|+++....+.+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555555555544444444444443
No 371
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=77.03 E-value=25 Score=25.29 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=39.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHhcccC-HHHHHHHHHHHHhCCCCCChhHHHHHH
Q 018782 153 NCIIRKLCKNEKVEEAYQLLDEMIERG-----ANPDEWSYNAILAYHCDRAE-VNMALRLITRMTKENVMPDRHTYNMVL 226 (350)
Q Consensus 153 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 226 (350)
+.++......+++.....+++.+.... -..+...|.+++.+..+..- .-.+..+|..+.+.+.++++.-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444455555555554442210 01234455566665544443 333455555555555556666666666
Q ss_pred HHHHHc
Q 018782 227 KLLVRV 232 (350)
Q Consensus 227 ~~~~~~ 232 (350)
.++.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 655543
No 372
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.59 E-value=48 Score=28.43 Aligned_cols=62 Identities=10% Similarity=0.053 Sum_probs=50.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHhhh---cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782 12 DLDQLLHALCKRKHVKVAHQFFDNAKH---EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
.+.-+.+.|...|+++.|++.|.+... ........|..++..-...|+|........+..+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 456677889999999999999999754 34456777888888888999999988888877654
No 373
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=75.99 E-value=31 Score=25.91 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=12.6
Q ss_pred HHHHHcCCHhHHHHHHHHHHh
Q 018782 227 KLLVRVGRFDRATEVWESMEK 247 (350)
Q Consensus 227 ~~~~~~~~~~~a~~~~~~~~~ 247 (350)
-.|.+.|.+++|.++++...+
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 345566666666666666554
No 374
>PRK10941 hypothetical protein; Provisional
Probab=75.86 E-value=40 Score=27.32 Aligned_cols=50 Identities=10% Similarity=-0.044 Sum_probs=30.4
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782 269 GKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
++++.|+.+.+.+.... |.++.-++.-.-.|.+.|.+..|..=++...+.
T Consensus 195 ~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 195 KQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred CcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 66666666666666654 555555665666666666666666655555444
No 375
>PRK11619 lytic murein transglycosylase; Provisional
Probab=75.60 E-value=71 Score=29.87 Aligned_cols=118 Identities=14% Similarity=0.065 Sum_probs=68.2
Q ss_pred ccCHHHHHHHHHHHHhCC-CCCC--hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHH
Q 018782 197 RAEVNMALRLITRMTKEN-VMPD--RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEE 273 (350)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 273 (350)
..+.+.|..++....... ..+. ..++..+.......+...++...+........ +......-+..-... ++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al~~-~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERRVRMALGT-GDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHHHHHHHHc-cCHHH
Confidence 445677777777664432 1111 12233343333333225566666665443222 223333333333344 89999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782 274 ACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER 318 (350)
Q Consensus 274 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 318 (350)
+...+..|.... .-...-...+.+++...|+.++|..+|+++..
T Consensus 331 ~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 988888886543 33555566778888889999999999999855
No 376
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.30 E-value=41 Score=27.04 Aligned_cols=206 Identities=11% Similarity=0.087 Sum_probs=130.2
Q ss_pred CCCCcCHhhHHHHHHH-HHccCChHHHHHHHHHhhh--c--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc---CC
Q 018782 4 FGIKPSIYDLDQLLHA-LCKRKHVKVAHQFFDNAKH--E--FTPTVKTYSILVRGLGDVGELSEARKLFDEMLER---KC 75 (350)
Q Consensus 4 ~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 75 (350)
.+-.||+..-+..-.+ -.+....++|+.-|++... + ....-.+.-.++....+.+++++....|.++... .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3455666655443322 1345688999999998755 1 2233455677889999999999999999887632 11
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH----hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCC--
Q 018782 76 --PVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIG-AEPDA----FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLV-- 146 (350)
Q Consensus 76 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 146 (350)
.-+..+.|+++...+.+.+.+...++|+.-++.- -..+. .|-+.|...|...+++.+..++++++.+..-.
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 1245667888877777777766666665543210 00111 13356788888899999999999888653211
Q ss_pred ---------ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----hcccCHHHHHHHHHHH
Q 018782 147 ---------PNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER-GANPDEWSYNAILAYH-----CDRAEVNMALRLITRM 210 (350)
Q Consensus 147 ---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~ 210 (350)
.=...|..-|..|....+-.....++++.... ..-|.+.... +|+-| .+.|++++|-.-|-++
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHH
Confidence 11346777788888888877888888876543 2334444433 44444 3678888876544333
No 377
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.80 E-value=15 Score=23.05 Aligned_cols=16 Identities=13% Similarity=0.080 Sum_probs=7.1
Q ss_pred cCCHHHHHHHHHHHHh
Q 018782 92 AGNIDEAHGMLREMRS 107 (350)
Q Consensus 92 ~~~~~~a~~~~~~~~~ 107 (350)
.++.++|+..|....+
T Consensus 19 ~~~~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 19 QNETQQALQKWRKALE 34 (80)
T ss_pred cchHHHHHHHHHHHHh
Confidence 3344444444444443
No 378
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=74.34 E-value=21 Score=23.26 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=25.2
Q ss_pred HccCChHHHHHHHHHh----hhcCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 018782 21 CKRKHVKVAHQFFDNA----KHEFTPT-----VKTYSILVRGLGDVGELSEARKLFDEML 71 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~----~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 71 (350)
.+.|++..|.+.+.+. .....+. ......+.......|++++|.+.+++.+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4566777765544443 2222211 1222334444555666666666666654
No 379
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=74.12 E-value=51 Score=27.57 Aligned_cols=102 Identities=9% Similarity=-0.013 Sum_probs=57.6
Q ss_pred hhcCCCCHHHHHHHHHHHhccC------------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018782 37 KHEFTPTVKTYSILVRGLGDVG------------ELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 104 (350)
Q Consensus 37 ~~~~~~~~~~~~~l~~~~~~~~------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 104 (350)
.+..|.|..+|..++..--..- -.+.-+.++++.++.+. .+...+..++..+.+..+.+...+.++.
T Consensus 12 v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~ 90 (321)
T PF08424_consen 12 VRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEE 90 (321)
T ss_pred HHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3445667777777775443221 13445666777666633 4666666677777777777777777777
Q ss_pred HHhCCCCCCHhhHHHHHHHHHh---cCCHhHHHHHHHHH
Q 018782 105 MRSIGAEPDAFSYSIFIHAFCE---ANDIHSVFRVLDSM 140 (350)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 140 (350)
+.... +-+...|...+..... .-.++....+|.+.
T Consensus 91 ~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 91 LLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred HHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 77652 2245555555554433 22344454444443
No 380
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=73.33 E-value=41 Score=26.14 Aligned_cols=31 Identities=19% Similarity=0.422 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782 255 STYSVMVHGLCKKKGKLEEACKYFEMMVDEG 285 (350)
Q Consensus 255 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 285 (350)
.+...|+.-+..+.|+.++|.+.|.++...+
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3444455555555566666666666666543
No 381
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=72.96 E-value=54 Score=27.35 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=32.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc---CCCCCHHHHHH--HHHHHhcccCHHHHHHHHHHHHh
Q 018782 155 IIRKLCKNEKVEEAYQLLDEMIER---GANPDEWSYNA--ILAYHCDRAEVNMALRLITRMTK 212 (350)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~ 212 (350)
++...-+.++.++|++.++++.+. .-.|+...|.. ....+...|+...+.+.+....+
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 344445556777777777776643 22334444332 33444566777777777766655
No 382
>PHA02875 ankyrin repeat protein; Provisional
Probab=72.94 E-value=31 Score=30.01 Aligned_cols=212 Identities=17% Similarity=0.111 Sum_probs=99.7
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhc
Q 018782 52 RGLGDVGELSEARKLFDEMLERKCPVDILA--HNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAF--SYSIFIHAFCEA 127 (350)
Q Consensus 52 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 127 (350)
...+..|+.+-+. .+.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..
T Consensus 7 ~~A~~~g~~~iv~----~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 7 CDAILFGELDIAR----RLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEE 78 (413)
T ss_pred HHHHHhCCHHHHH----HHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHC
Confidence 3344567765544 4445676665433 234555666777765 444555566555432 122345566677
Q ss_pred CCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhcccCHHHHHH
Q 018782 128 NDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWS--YNAILAYHCDRAEVNMALR 205 (350)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~ 205 (350)
|+.+.+..+++.-....-..+..- .+.+...+..|+.+ +++.+.+.|..|+... -...+...+..|+.+.+..
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~ 153 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDG-MTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIEL 153 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 887766555543211100011111 12333344556653 4444555565554321 1123344456677665444
Q ss_pred HHHHHHhCCCCCC---hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHH---HHHHHHHhhccCcHHHHHHHHH
Q 018782 206 LITRMTKENVMPD---RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTY---SVMVHGLCKKKGKLEEACKYFE 279 (350)
Q Consensus 206 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~---~~ll~~~~~~~~~~~~a~~~~~ 279 (350)
++ +.|..++ ..-.+ .+...+..|+.+ +.+.+.+.|..|+...- ...+...+.. |+. ++.+
T Consensus 154 Ll----~~g~~~~~~d~~g~T-pL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~-~~~----~iv~ 219 (413)
T PHA02875 154 LI----DHKACLDIEDCCGCT-PLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIEN-NKI----DIVR 219 (413)
T ss_pred HH----hcCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHc-CCH----HHHH
Confidence 44 4443332 22223 333445566654 44445556665554321 1233211223 555 3455
Q ss_pred HHHhCCCCCCH
Q 018782 280 MMVDEGIPPYS 290 (350)
Q Consensus 280 ~~~~~~~~~~~ 290 (350)
.+.+.|..++.
T Consensus 220 ~Ll~~gad~n~ 230 (413)
T PHA02875 220 LFIKRGADCNI 230 (413)
T ss_pred HHHHCCcCcch
Confidence 55667755553
No 383
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.90 E-value=85 Score=29.56 Aligned_cols=150 Identities=12% Similarity=0.134 Sum_probs=89.8
Q ss_pred HHHHHccCChHHHHHHHHHhhhcCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018782 17 LHALCKRKHVKVAHQFFDNAKHEFTP--TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGN 94 (350)
Q Consensus 17 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (350)
++.+.+.+.+++|+..-+......+. .......++..+.-.|++++|-...-.|... +..-|...+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 45667788889998887776543232 4567788899999999999999988888765 66666666666666655
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH------------------HhhCCCCccHHHHHHHH
Q 018782 95 IDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDS------------------MKRYNLVPNVFTYNCII 156 (350)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------------------~~~~~~~~~~~~~~~l~ 156 (350)
......+ +.......+...|..++..+.. .+...-.++.+. ..+. ..+...-..|+
T Consensus 439 l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La 512 (846)
T KOG2066|consen 439 LTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLA 512 (846)
T ss_pred cchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHH
Confidence 4432221 1111111344456666555554 222111111111 0111 11233444578
Q ss_pred HHHHccCCHHHHHHHHHHHH
Q 018782 157 RKLCKNEKVEEAYQLLDEMI 176 (350)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~ 176 (350)
..|...++++.|..++-...
T Consensus 513 ~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 513 HLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHccChHHHHHHHHhcc
Confidence 88888999999988886654
No 384
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=72.88 E-value=14 Score=20.53 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=20.1
Q ss_pred CcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 018782 269 GKLEEACKYFEMMVDEGIPPYSSTVEMLRN 298 (350)
Q Consensus 269 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (350)
|-..++...+++|.+.|+..++..+..+++
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 666677777777777776666666665554
No 385
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=72.71 E-value=18 Score=31.51 Aligned_cols=109 Identities=15% Similarity=-0.001 Sum_probs=79.8
Q ss_pred HHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018782 15 QLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGN 94 (350)
Q Consensus 15 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (350)
.-.......+.++.|..++.++.+..+..+..|..-..++.+.+++..|+.=+...++..+. -...|..=..++...+.
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGE 87 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHH
Confidence 34455667889999999999998866667777777778899999999999988888887422 33444444556666777
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 018782 95 IDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE 126 (350)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (350)
+.+|+..|+.... +.|+..-+...+.-|-.
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 8888888888776 46777666666655543
No 386
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=72.45 E-value=30 Score=26.29 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=24.6
Q ss_pred CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782 215 VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR 248 (350)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 248 (350)
..|+..+|..++.++...|+.++|.+...++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567777777777777777777777777777654
No 387
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.93 E-value=65 Score=27.77 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=40.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHh--cCCHHHHHHHHHHHHhC
Q 018782 51 VRGLGDVGELSEARKLFDEMLERKCPVDIL--AHNSLLEAMCK--AGNIDEAHGMLREMRSI 108 (350)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~--~~~~~~a~~~~~~~~~~ 108 (350)
+..+-..+++..|.++|+.+..+ ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33445788999999999999887 565554 45555555554 55678899888887764
No 388
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.64 E-value=16 Score=21.69 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=10.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 018782 85 LLEAMCKAGNIDEAHGMLREMR 106 (350)
Q Consensus 85 l~~~~~~~~~~~~a~~~~~~~~ 106 (350)
++.++...|++++|.+++..+.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4445555555555555544443
No 389
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=69.55 E-value=6.2 Score=27.62 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=20.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 018782 92 AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA 123 (350)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (350)
.|.-..|..+|..|++.|-+||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 35556677778888777777664 5666554
No 390
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=69.42 E-value=65 Score=26.80 Aligned_cols=96 Identities=11% Similarity=0.016 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHH----hcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC----HH
Q 018782 220 HTYNMVLKLLVRVGRFDRATEVWESME----KRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPY----SS 291 (350)
Q Consensus 220 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~ 291 (350)
..+.....-|++.|+-+.|.+.+.... ..|.+.|...+.+-+.-+.....-..+-++..+.+.+.|-..+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 344555566677777776666655443 3355666655555554443332233344444444444442222 22
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782 292 TVEMLRNRLVGLGFLDIIEILADKME 317 (350)
Q Consensus 292 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 317 (350)
+|..+. |....++.+|-.+|-...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 333332 223355666666655543
No 391
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=69.03 E-value=28 Score=22.39 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=5.6
Q ss_pred CCHHHHHHHHHHHH
Q 018782 163 EKVEEAYQLLDEMI 176 (350)
Q Consensus 163 g~~~~a~~~~~~~~ 176 (350)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 33444444444333
No 392
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=68.85 E-value=33 Score=23.19 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=12.7
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHh
Q 018782 187 YNAILAYHCDRAEVNMALRLITRMTK 212 (350)
Q Consensus 187 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 212 (350)
|..++..|...|..++|++++.....
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44444445555555555555544443
No 393
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=68.84 E-value=69 Score=26.83 Aligned_cols=28 Identities=21% Similarity=0.483 Sum_probs=19.0
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhcCC
Q 018782 223 NMVLKLLVRVGRFDRATEVWESMEKRGF 250 (350)
Q Consensus 223 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 250 (350)
..+...+.++|..+.|..+++.+.+.++
T Consensus 158 ~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 158 LRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 3344445577888888888888877644
No 394
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=68.76 E-value=42 Score=30.88 Aligned_cols=73 Identities=15% Similarity=0.131 Sum_probs=52.0
Q ss_pred HHHHHHHccCChHHHHHHHHHhhh---cCCCCHHHHHHHHHHHhccCCHH------HHHHHHHHHHhcCCCCCHHHHHHH
Q 018782 15 QLLHALCKRKHVKVAHQFFDNAKH---EFTPTVKTYSILVRGLGDVGELS------EARKLFDEMLERKCPVDILAHNSL 85 (350)
Q Consensus 15 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~l 85 (350)
+|+.+|...|++..+.++++.+.. +...-...+|..++...+.|.++ .+.+++++.. +.-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 789999999999999999998754 33445677888999999999765 3444444433 33466677666
Q ss_pred HHHHH
Q 018782 86 LEAMC 90 (350)
Q Consensus 86 ~~~~~ 90 (350)
+.+..
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 65443
No 395
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.72 E-value=50 Score=25.18 Aligned_cols=89 Identities=13% Similarity=0.047 Sum_probs=49.4
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHH-----HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 018782 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYN-----CIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHC 195 (350)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 195 (350)
...+...+++++|...++..... |....+. .|.+.....|.+++|+..++.....+. .......-...+.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 34556667777777776665543 2222222 233455666777777777766554422 1222233345566
Q ss_pred cccCHHHHHHHHHHHHhCC
Q 018782 196 DRAEVNMALRLITRMTKEN 214 (350)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~ 214 (350)
..|+-++|..-|+.....+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 6777777777777766653
No 396
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=68.59 E-value=14 Score=30.11 Aligned_cols=30 Identities=20% Similarity=0.294 Sum_probs=16.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 018782 47 YSILVRGLGDVGELSEARKLFDEMLERKCP 76 (350)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 76 (350)
|+..|....+.|++++|++++++..+.|..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 445555555555555555555555555544
No 397
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=68.57 E-value=78 Score=28.80 Aligned_cols=114 Identities=10% Similarity=-0.027 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHH
Q 018782 77 VDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCII 156 (350)
Q Consensus 77 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 156 (350)
|--...|...-.+.-.|+...|...+...........-.....|.....+.|-...|..++.+..... ...+-++..+.
T Consensus 605 p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g 683 (886)
T KOG4507|consen 605 PIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLG 683 (886)
T ss_pred CeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcc
Confidence 33333333333344567777777777776654322222334445555556666666777766665543 33455666777
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 018782 157 RKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILA 192 (350)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 192 (350)
+++.-..+.+.|++.|++..+.... +...-+.|..
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~ 718 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLTTK-CPECENSLKL 718 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHH
Confidence 7777778888888888887766433 4444444443
No 398
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=68.57 E-value=13 Score=30.35 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=22.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 018782 152 YNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSY 187 (350)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 187 (350)
|+..|....+.|++++|+.++++..+.|..--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 446666667777777777777777766655333333
No 399
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=68.55 E-value=13 Score=22.36 Aligned_cols=47 Identities=11% Similarity=0.091 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 018782 253 SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLV 301 (350)
Q Consensus 253 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (350)
....++.++..++.. .-.+.++..+.++...| ..+..+|..-++.++
T Consensus 7 ~~~l~~Ql~el~Aed-~AieDtiy~L~~al~~g-~I~~d~~lK~vR~La 53 (65)
T PF09454_consen 7 EDPLSNQLYELVAED-HAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLA 53 (65)
T ss_dssp SSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344445555544443 44555555555555555 344444444444443
No 400
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=68.40 E-value=38 Score=24.36 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 018782 66 LFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN 128 (350)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (350)
+...+.+.|++++.. -..++..+...++.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334445555554332 23355555555555666666666666555444444433444444433
No 401
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=67.70 E-value=30 Score=22.26 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=36.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHH
Q 018782 168 AYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRAT 239 (350)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 239 (350)
+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .| | ..|..++.++...|.-.-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhhh
Confidence 34555666666543 43344433333335567777777777766 43 2 34666677777666655543
No 402
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=67.01 E-value=20 Score=21.22 Aligned_cols=23 Identities=22% Similarity=0.478 Sum_probs=12.1
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHH
Q 018782 224 MVLKLLVRVGRFDRATEVWESME 246 (350)
Q Consensus 224 ~l~~~~~~~~~~~~a~~~~~~~~ 246 (350)
.++.++...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555555555555555554
No 403
>PRK10941 hypothetical protein; Provisional
Probab=66.97 E-value=68 Score=26.06 Aligned_cols=78 Identities=13% Similarity=-0.017 Sum_probs=57.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHH
Q 018782 46 TYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIG-AEPDAFSYSIFIHAF 124 (350)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~ 124 (350)
..+.+-.+|.+.++++.|++..+.+....+ .++.-+.--.-.|.+.|.+..|..=++...+.. -.|+.......+...
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 346667788899999999999999988743 366777777778999999999999888887653 234444444444443
No 404
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=66.83 E-value=60 Score=25.39 Aligned_cols=99 Identities=11% Similarity=0.080 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 018782 40 FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPV---DILAH--NSLLEAMCKAGNIDEAHGMLREMRSIGAEPDA 114 (350)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 114 (350)
+.+...-++.|+--|.-...+.+|.+.|.. +.|+.| +...+ ..-|......|+.+.|++....+...-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 344555555665555555555555555543 223332 33333 33556667788888888877777543333343
Q ss_pred hhHHHHHH----HHHhcCCHhHHHHHHHHH
Q 018782 115 FSYSIFIH----AFCEANDIHSVFRVLDSM 140 (350)
Q Consensus 115 ~~~~~l~~----~~~~~~~~~~a~~~~~~~ 140 (350)
..+..|.. -..+.|..++|+++.+.-
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 23322222 134566777777777654
No 405
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=66.21 E-value=25 Score=20.87 Aligned_cols=13 Identities=31% Similarity=0.419 Sum_probs=4.6
Q ss_pred CCHHHHHHHHHHH
Q 018782 163 EKVEEAYQLLDEM 175 (350)
Q Consensus 163 g~~~~a~~~~~~~ 175 (350)
|++=+|-++++.+
T Consensus 13 g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 13 GDFFEAHEVLEEL 25 (62)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CCHHHhHHHHHHH
Confidence 3333333333333
No 406
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=64.79 E-value=1.4e+02 Score=28.80 Aligned_cols=223 Identities=9% Similarity=0.050 Sum_probs=116.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHh-------hHHHHHH-HHHhcCCHhHHHHHHHHHhhC----CCCccHHHHHHHH
Q 018782 89 MCKAGNIDEAHGMLREMRSIGAEPDAF-------SYSIFIH-AFCEANDIHSVFRVLDSMKRY----NLVPNVFTYNCII 156 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 156 (350)
.....++++|..+..++...-..|+.. .++.+-. .....|+++.+.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345788999999988886542222221 3333322 233567888888888776543 2234456667777
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHH--HHhcccCHHH--HHHHHHHHHhCC--CCC----ChhHHH
Q 018782 157 RKLCKNEKVEEAYQLLDEMIERGANPDEWSY---NAILA--YHCDRAEVNM--ALRLITRMTKEN--VMP----DRHTYN 223 (350)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~ll~--~~~~~~~~~~--a~~~~~~~~~~~--~~~----~~~~~~ 223 (350)
.+..-.|++++|..+..+..+.....+...+ ..+.. .+...|+... .+..+....... -+| -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888899999999998887665333344333 33322 2345553322 222333222210 111 122344
Q ss_pred HHHHHHHHcCCHhHHHHH----HHHHHhcCCCCCHHHHH--HHHHHHhhccCcHHHHHHHHHHHHhCCCC----CCHHHH
Q 018782 224 MVLKLLVRVGRFDRATEV----WESMEKRGFYPSVSTYS--VMVHGLCKKKGKLEEACKYFEMMVDEGIP----PYSSTV 293 (350)
Q Consensus 224 ~l~~~~~~~~~~~~a~~~----~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~ 293 (350)
.+..++.+ ++.+..- +.-.......|-..... .+....... |+.++|...++++...... ++...-
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~-Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLR-GDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 44455544 3333222 22222222222222222 344444445 9999999999888654322 233333
Q ss_pred HHHHHH--HHcCCChhHHHHHHHH
Q 018782 294 EMLRNR--LVGLGFLDIIEILADK 315 (350)
Q Consensus 294 ~~l~~~--~~~~g~~~~a~~~~~~ 315 (350)
...++. ....|+...+.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 333333 2346777777766665
No 407
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.35 E-value=78 Score=25.85 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=35.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-------hHHHHHHHHHhcCCHhHHHHHH
Q 018782 85 LLEAMCKAGNIDEAHGMLREMRSIGAEPDAF-------SYSIFIHAFCEANDIHSVFRVL 137 (350)
Q Consensus 85 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~ 137 (350)
+.+-..+.+++++|+..+.++...|+..+.. +...+...|...|+....-+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 4556667788888888888888887766543 3444566666666665554444
No 408
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.30 E-value=89 Score=26.49 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=25.2
Q ss_pred HHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHH-hh--ccCcHHHHHHHHHHHHhCC
Q 018782 230 VRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGL-CK--KKGKLEEACKYFEMMVDEG 285 (350)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~-~~--~~~~~~~a~~~~~~~~~~~ 285 (350)
.+-++..-+......+.++.+.-=..+|.++=-.+ +. ..+..++|.+..-+|.+.|
T Consensus 288 ~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 288 TKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 34455555555555555443333333444331111 11 1245556666665665543
No 409
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=64.25 E-value=9.3 Score=26.81 Aligned_cols=31 Identities=10% Similarity=0.314 Sum_probs=22.6
Q ss_pred hcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 018782 126 EANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRK 158 (350)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (350)
..|.-..|..+|+.|.+.|-+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 44666778888999988887776 46666543
No 410
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=64.11 E-value=1.3e+02 Score=28.40 Aligned_cols=120 Identities=19% Similarity=0.375 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHH----------HHHHHHHHHHcc
Q 018782 96 DEAHGMLREMRSIGAEPD---AFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVF----------TYNCIIRKLCKN 162 (350)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~ 162 (350)
++--..+.+|+..--.|+ ..+...++-.|....+++...++.+.+... ||.. .|...++---+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~ 256 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRP 256 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCC
Confidence 444556777776533343 446667777888888999999999988763 3321 122233333455
Q ss_pred CCHHHHHHHHHHHHHcC--CCCCHHH-----HHHHH--HHHhcccCHHHHHHHHHHHHhCCCCCChh
Q 018782 163 EKVEEAYQLLDEMIERG--ANPDEWS-----YNAIL--AYHCDRAEVNMALRLITRMTKENVMPDRH 220 (350)
Q Consensus 163 g~~~~a~~~~~~~~~~~--~~~~~~~-----~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 220 (350)
|+-++|++..-.+.+.. +.||... |.-+. +.|...+..+.|.+.|++..+ +.|+..
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~ 321 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEY 321 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhh
Confidence 78888888877776653 3444322 22111 223345667778888887766 345543
No 411
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=63.84 E-value=52 Score=23.70 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=10.7
Q ss_pred HHHHhcccCHHHHHHHHHHHHhCCC
Q 018782 191 LAYHCDRAEVNMALRLITRMTKENV 215 (350)
Q Consensus 191 l~~~~~~~~~~~a~~~~~~~~~~~~ 215 (350)
+..+...++.-.|.++++.+.+.++
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p 51 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGP 51 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCC
Confidence 3333333333444444444444433
No 412
>PHA02875 ankyrin repeat protein; Provisional
Probab=63.83 E-value=99 Score=26.87 Aligned_cols=208 Identities=11% Similarity=0.112 Sum_probs=104.8
Q ss_pred HHHHccCChHHHHHHHHHhhhcCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhcC
Q 018782 18 HALCKRKHVKVAHQFFDNAKHEFTPTVK--TYSILVRGLGDVGELSEARKLFDEMLERKCPVDIL--AHNSLLEAMCKAG 93 (350)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~ 93 (350)
...+..|+.+.+..+++. +..++.. ...+.+...+..|+.+- .+.+.+.|..|+.. .....+...+..|
T Consensus 7 ~~A~~~g~~~iv~~Ll~~---g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 7 CDAILFGELDIARRLLDI---GINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHHhCCHHHHHHHHHC---CCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 344567888777777653 3333332 23344555567777654 44455566555432 1223455666788
Q ss_pred CHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHH--HHHHHHHHHccCCHHH
Q 018782 94 NIDEAHGMLREMRSIGAEPD----AFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFT--YNCIIRKLCKNEKVEE 167 (350)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~ 167 (350)
+.+.+..+++ .|...+ ..-. ..+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-
T Consensus 80 ~~~~v~~Ll~----~~~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~ 150 (413)
T PHA02875 80 DVKAVEELLD----LGKFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKG 150 (413)
T ss_pred CHHHHHHHHH----cCCcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence 8776655554 332211 1112 2344455566654 4455555565544321 1223444556777655
Q ss_pred HHHHHHHHHHcCCCCC---HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhH---HHHHHHHHHHcCCHhHHHHH
Q 018782 168 AYQLLDEMIERGANPD---EWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHT---YNMVLKLLVRVGRFDRATEV 241 (350)
Q Consensus 168 a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~ 241 (350)
+..+ .+.|..++ ..-.+.+.. .+..|+.+- .+.+.+.|..++... ...++...+..|+.+ +
T Consensus 151 v~~L----l~~g~~~~~~d~~g~TpL~~-A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----i 217 (413)
T PHA02875 151 IELL----IDHKACLDIEDCCGCTPLII-AMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKID----I 217 (413)
T ss_pred HHHH----HhcCCCCCCCCCCCCCHHHH-HHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----H
Confidence 4444 44444332 222333333 344566553 444556665554322 124455455666654 4
Q ss_pred HHHHHhcCCCCCH
Q 018782 242 WESMEKRGFYPSV 254 (350)
Q Consensus 242 ~~~~~~~~~~p~~ 254 (350)
.+.+.+.|..++.
T Consensus 218 v~~Ll~~gad~n~ 230 (413)
T PHA02875 218 VRLFIKRGADCNI 230 (413)
T ss_pred HHHHHHCCcCcch
Confidence 5555667777764
No 413
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=63.49 E-value=1.4e+02 Score=28.47 Aligned_cols=96 Identities=11% Similarity=0.069 Sum_probs=64.0
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHh---ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLG---DVGELSEARKLFDEMLERKCPVDILAHNSLL 86 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 86 (350)
...+..||..+.+.|++++..+--..|..-.|.++..|...+.... ..++..++..+|++....-. ++..|.-.+
T Consensus 113 ~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~v~iw~e~~ 190 (881)
T KOG0128|consen 113 YAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--SVPIWEEVV 190 (881)
T ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--cchHHHHHH
Confidence 3445678888889999998888888888777888888877776543 34677778888887765432 333333333
Q ss_pred HHH-------HhcCCHHHHHHHHHHHHh
Q 018782 87 EAM-------CKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 87 ~~~-------~~~~~~~~a~~~~~~~~~ 107 (350)
..+ .+.++++....+|.+.+.
T Consensus 191 ~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 191 NYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHhccccccccccchhhhHHHHHHHh
Confidence 322 234566677777777654
No 414
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=63.44 E-value=89 Score=26.20 Aligned_cols=117 Identities=17% Similarity=0.180 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh------cccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHH
Q 018782 165 VEEAYQLLDEMIERGANPDEWSYNAILAYHC------DRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRA 238 (350)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 238 (350)
++++..++++....+. |.+......|.++- ..-+|.....+|+.+......|- ++.|.- -+.......+.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPv-V~LNRA-VAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPV-VTLNRA-VALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCe-EeehHH-HHHHHhhhHHhH
Confidence 3455555555555543 55555555554432 12345555555555555332221 222222 233333445555
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782 239 TEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE 284 (350)
Q Consensus 239 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 284 (350)
+.+.+-+...+--.+...|...=..++.+.|+.++|..-|++....
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 5555555544222234444554444555556666666666665544
No 415
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=63.35 E-value=68 Score=26.47 Aligned_cols=43 Identities=14% Similarity=0.319 Sum_probs=23.0
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782 205 RLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEK 247 (350)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 247 (350)
++++.+...++.|.-..+..+.-.+.+.=.+.....+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 3444455555555555555555555555555555555555543
No 416
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.90 E-value=25 Score=19.56 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=20.0
Q ss_pred HHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782 230 VRVGRFDRATEVWESMEKRGFYPSVSTYSVMVH 262 (350)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 262 (350)
.+.|-..++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 445566666666666666666666666555543
No 417
>PRK09857 putative transposase; Provisional
Probab=62.21 E-value=89 Score=25.77 Aligned_cols=66 Identities=6% Similarity=0.073 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc
Q 018782 82 HNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN 148 (350)
Q Consensus 82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 148 (350)
+..++.-....++.++..++++.+.+. .+......-.+..-+...|.-+++..+.+.|...|+..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445555545566666666666666554 222333334455556666666677778888887776544
No 418
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=61.90 E-value=41 Score=21.80 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782 40 FTPTVKTYSILVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
.|.+......+...+...|+++.|++.+-.+.+.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4555555566666666666666666666665554
No 419
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.28 E-value=1.2e+02 Score=29.30 Aligned_cols=131 Identities=15% Similarity=0.172 Sum_probs=83.1
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhH
Q 018782 158 KLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDR 237 (350)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 237 (350)
.+...|+.+.|++.-.++- +..+|..|.....+.|+.+-|+..|++... |..|--.|.-.|+.++
T Consensus 652 LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eK 716 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEK 716 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHH
Confidence 3456788888877655432 677899999998999999999888887654 3334445666788888
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782 238 ATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME 317 (350)
Q Consensus 238 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 317 (350)
-.++.+....+ -|..+ ....+++ . |+.++-.+++... |.. +..| ......|.-++|.++.++..
T Consensus 717 L~Km~~iae~r---~D~~~--~~qnalY-l-~dv~ervkIl~n~---g~~--~lay----lta~~~G~~~~ae~l~ee~~ 780 (1202)
T KOG0292|consen 717 LSKMMKIAEIR---NDATG--QFQNALY-L-GDVKERVKILENG---GQL--PLAY----LTAAAHGLEDQAEKLGEELE 780 (1202)
T ss_pred HHHHHHHHHhh---hhhHH--HHHHHHH-h-ccHHHHHHHHHhc---Ccc--cHHH----HHHhhcCcHHHHHHHHHhhc
Confidence 77776666532 23222 1122222 2 7888777777643 311 2222 12334688888999888887
Q ss_pred cc
Q 018782 318 RS 319 (350)
Q Consensus 318 ~~ 319 (350)
..
T Consensus 781 ~~ 782 (1202)
T KOG0292|consen 781 KQ 782 (1202)
T ss_pred cc
Confidence 63
No 420
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=60.64 E-value=76 Score=25.32 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 018782 84 SLLEAMCKAGNIDEAHGMLREMRS----IG-AEPDAFSYSIFIHAFCEANDIHSVFRVLDSM 140 (350)
Q Consensus 84 ~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 140 (350)
.+...|...|++++|.++|+.+.. .| ..+...+...+..++...|+.+....+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455666777777777777776642 22 2344455666667777777777666654443
No 421
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=60.32 E-value=1e+02 Score=28.67 Aligned_cols=91 Identities=10% Similarity=0.163 Sum_probs=61.2
Q ss_pred HHHHHHhcccCHHHHHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHhH------HHHHHHHHHhcCCCCCHHHHHHH
Q 018782 189 AILAYHCDRAEVNMALRLITRMTKEN--VMPDRHTYNMVLKLLVRVGRFDR------ATEVWESMEKRGFYPSVSTYSVM 260 (350)
Q Consensus 189 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~------a~~~~~~~~~~~~~p~~~~~~~l 260 (350)
+++.+|...|++-.+.++++.....+ -+.-...||..++.+.+.|.++- |.+.+++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999987652 22234568888899999997543 444444443 55688888888
Q ss_pred HHHHhhccCcHHHHHHHHHHHHh
Q 018782 261 VHGLCKKKGKLEEACKYFEMMVD 283 (350)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~ 283 (350)
+.+-..- -.-.-..-++.+++.
T Consensus 110 ~~~sln~-t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNP-TQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcCh-HhHHhccHHHHHHHH
Confidence 8774432 233334445555444
No 422
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.49 E-value=52 Score=22.22 Aligned_cols=78 Identities=19% Similarity=0.088 Sum_probs=30.0
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 018782 25 HVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLRE 104 (350)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 104 (350)
..++|..+.+.+.....-...+--.-+..+...|++++|+ .. ......||...|..|. -.+.|-.+++...+.+
T Consensus 21 cH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~AL---l~-~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEAL---LL-PQCHCYPDLEPWAALC--AWKLGLASALESRLTR 94 (116)
T ss_dssp -HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHH---HH-HTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH---Hh-cccCCCccHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 4455555555554422212222222233444555555551 11 1111234444444332 2345555555555555
Q ss_pred HHhC
Q 018782 105 MRSI 108 (350)
Q Consensus 105 ~~~~ 108 (350)
+...
T Consensus 95 la~~ 98 (116)
T PF09477_consen 95 LASS 98 (116)
T ss_dssp HCT-
T ss_pred HHhC
Confidence 5443
No 423
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.12 E-value=53 Score=22.18 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=6.9
Q ss_pred CcHHHHHHHHHHHHhCC
Q 018782 269 GKLEEACKYFEMMVDEG 285 (350)
Q Consensus 269 ~~~~~a~~~~~~~~~~~ 285 (350)
|-.+++...+.++-..|
T Consensus 83 GL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 83 GLASALESRLTRLASSG 99 (116)
T ss_dssp T-HHHHHHHHHHHCT-S
T ss_pred ccHHHHHHHHHHHHhCC
Confidence 44444444444444433
No 424
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=58.42 E-value=69 Score=27.77 Aligned_cols=99 Identities=13% Similarity=0.103 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHh-------cCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--C
Q 018782 43 TVKTYSILVRGLGDVGELSEARKLFDEMLE-------RKCPV-----DILAHNSLLEAMCKAGNIDEAHGMLREMRS--I 108 (350)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 108 (350)
+...-..++..+....++.+.++..+.-.. .|..| .-.+...|++.++-.|++..|+++++.+.- .
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Confidence 344444455555666666655554443211 11111 122345577888888888888888877631 1
Q ss_pred ----CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHh
Q 018782 109 ----GA-EPDAFSYSIFIHAFCEANDIHSVFRVLDSMK 141 (350)
Q Consensus 109 ----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 141 (350)
.+ .-...++-.+.-+|...+++.+|.++|....
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 2234567777888888888888888888764
No 425
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=58.41 E-value=97 Score=25.64 Aligned_cols=58 Identities=12% Similarity=0.253 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 018782 169 YQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVR 231 (350)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (350)
.++++.+.+.++.|.-..+.-+.-.+.+.=....++.+|+.+.... .-|..|+..|+.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHH
Confidence 4678888888999999888888877888888999999999987632 236677777663
No 426
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.74 E-value=20 Score=29.82 Aligned_cols=90 Identities=14% Similarity=0.024 Sum_probs=53.8
Q ss_pred hcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHH
Q 018782 126 EANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALR 205 (350)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 205 (350)
..|.++.|+..|...+... ++....|..-.+++.+.+++..|+.=+......+.. +..-|-.--.+....|+|++|..
T Consensus 126 n~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 3466777777777766654 445555666666777777777777766666654322 12223323333445677777777
Q ss_pred HHHHHHhCCCCC
Q 018782 206 LITRMTKENVMP 217 (350)
Q Consensus 206 ~~~~~~~~~~~~ 217 (350)
.+....+.+..+
T Consensus 204 dl~~a~kld~dE 215 (377)
T KOG1308|consen 204 DLALACKLDYDE 215 (377)
T ss_pred HHHHHHhccccH
Confidence 777777665543
No 427
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=57.11 E-value=2e+02 Score=29.08 Aligned_cols=125 Identities=17% Similarity=0.156 Sum_probs=69.4
Q ss_pred HHHHccCChHHHHH------HHHHhh-hcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-------hcCCCCCHHHHH
Q 018782 18 HALCKRKHVKVAHQ------FFDNAK-HEFTPTVKTYSILVRGLGDVGELSEARKLFDEML-------ERKCPVDILAHN 83 (350)
Q Consensus 18 ~~~~~~g~~~~a~~------~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~ 83 (350)
......|.+.++.+ +++... ...++....|..+...+-+.|+.++|...-.... ....+-+...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 34445666666665 555432 2446667778888888888888888877655432 111222344455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 018782 84 SLLEAMCKAGNIDEAHGMLREMRSI-----G--AEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKR 142 (350)
Q Consensus 84 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 142 (350)
.+...+...+....|...+.+.+.. | .+|...+++.+-..+...++.+.|.++.+.+..
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5555555555666666666555431 1 233334444444444455666666666666543
No 428
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=56.30 E-value=1.3e+02 Score=25.77 Aligned_cols=117 Identities=13% Similarity=0.180 Sum_probs=71.3
Q ss_pred HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc-------CC------------------
Q 018782 21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER-------KC------------------ 75 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~------------------ 75 (350)
...++.+....++ +..|-...++..+...+...|+.+.|.+++++.+-. .+
T Consensus 21 v~~~Dp~~l~~ll----~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~ 96 (360)
T PF04910_consen 21 VQSHDPNALINLL----QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRR 96 (360)
T ss_pred HHccCHHHHHHHH----HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcc
Confidence 3444555544443 346778889999999999999999988888876411 11
Q ss_pred CCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-hcCCHhHHHHHHHHHh
Q 018782 76 PVDILAHNSL---LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFC-EANDIHSVFRVLDSMK 141 (350)
Q Consensus 76 ~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 141 (350)
.-|...|.++ +..+.+.|-+..|+++.+-+......-|+.....+|..|+ +.++++-.+++++...
T Consensus 97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 1123333333 4455666777777777777776554445555555555543 4555655666665543
No 429
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=56.15 E-value=1.5e+02 Score=26.49 Aligned_cols=68 Identities=12% Similarity=0.055 Sum_probs=50.0
Q ss_pred CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHhc
Q 018782 6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVG-ELSEARKLFDEMLER 73 (350)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~ 73 (350)
++.|+..|...+..+.+.+.+.+...+|..+....|.++..|-....-....+ +++.|..+|.+-++.
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 34578888888888888888999999999988766777777755554444333 478888888776655
No 430
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.67 E-value=1.1e+02 Score=24.56 Aligned_cols=106 Identities=11% Similarity=0.024 Sum_probs=69.0
Q ss_pred HHHHHHcCCHhHHHHHHHHHHh------cCCCCCHHHH-----------HHHHHHHhhccCcHHHHHHHHHHHHhCCCCC
Q 018782 226 LKLLVRVGRFDRATEVWESMEK------RGFYPSVSTY-----------SVMVHGLCKKKGKLEEACKYFEMMVDEGIPP 288 (350)
Q Consensus 226 ~~~~~~~~~~~~a~~~~~~~~~------~~~~p~~~~~-----------~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~ 288 (350)
.+-+.+.|++.+|..-|.+++. ..-+|....| ..+-.++... |++-++++.-.+..... +.
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~-~e~yevleh~seiL~~~-~~ 262 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKK-EEYYEVLEHCSEILRHH-PG 262 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhH-HHHHHHHHHHHHHHhcC-Cc
Confidence 3445566677776666655431 1123332222 2223333434 78888888888888775 77
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHHHHhcc
Q 018782 289 YSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELANAMRG 333 (350)
Q Consensus 289 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 333 (350)
|...|..-..+.+..-+.++|..=|....+.++.....+...+..
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~ 307 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRL 307 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 888888888888888888899988888888877766666655543
No 431
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=55.29 E-value=1.7e+02 Score=26.92 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=33.2
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 018782 204 LRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVD 283 (350)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 283 (350)
...++.+...-+-.+......++..|.+.|-.+.|.++++.+-..-. ...-|...+.-+.+. |+...+..+.+.+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra-~d~~~v~~i~~~ll~ 466 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRA-GDYSLVTRIADRLLE 466 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHC-CCHHHHHHHHHHHHH
Confidence 34444444433334556667788888888888888888887765422 223344444444443 777766666665553
No 432
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.21 E-value=1.9e+02 Score=27.43 Aligned_cols=21 Identities=14% Similarity=-0.013 Sum_probs=12.9
Q ss_pred HHhcccCHHHHHHHHHHHHhC
Q 018782 193 YHCDRAEVNMALRLITRMTKE 213 (350)
Q Consensus 193 ~~~~~~~~~~a~~~~~~~~~~ 213 (350)
+-.-.+++.+|.+.-+.|.+.
T Consensus 375 asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 375 ASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred hhhhccCHHHHHHHHHHHhcc
Confidence 334456667777666666664
No 433
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=54.10 E-value=1.2e+02 Score=24.75 Aligned_cols=84 Identities=8% Similarity=0.037 Sum_probs=39.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc----c
Q 018782 91 KAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE----ANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK----N 162 (350)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 162 (350)
..+++..+...+......+. ......+...|.. ..+...|..+|+...+.|.. .....|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 34556666666666655332 1223333333332 23455566666655554422 122223333332 2
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 018782 163 EKVEEAYQLLDEMIERGA 180 (350)
Q Consensus 163 g~~~~a~~~~~~~~~~~~ 180 (350)
.+..+|...+++.-+.|.
T Consensus 127 ~d~~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 127 LDLVKALKYYEKAAKLGN 144 (292)
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 255555555555555543
No 434
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=54.07 E-value=59 Score=21.16 Aligned_cols=53 Identities=23% Similarity=0.200 Sum_probs=26.5
Q ss_pred hccCCHHHHHHHHHHHHh----cCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782 55 GDVGELSEARKLFDEMLE----RKCPVD----ILAHNSLLEAMCKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~----~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 107 (350)
.+.|++..|.+.+.+..+ .+.... ....-.+.......|++++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456777777555444432 222210 11222234455566677777766666653
No 435
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.54 E-value=2.1e+02 Score=27.27 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=13.0
Q ss_pred HHHHHhhccCcHHHHHHHHHHHH
Q 018782 260 MVHGLCKKKGKLEEACKYFEMMV 282 (350)
Q Consensus 260 ll~~~~~~~~~~~~a~~~~~~~~ 282 (350)
|..-|... +++..|+.++-.+.
T Consensus 511 La~LYl~d-~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYD-NKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHc-cChHHHHHHHHhcc
Confidence 44445545 67777776665554
No 436
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.18 E-value=1e+02 Score=24.67 Aligned_cols=19 Identities=21% Similarity=0.101 Sum_probs=9.1
Q ss_pred HHHHhccCCHHHHHHHHHH
Q 018782 51 VRGLGDVGELSEARKLFDE 69 (350)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~ 69 (350)
++++...|+..+|.+-|+.
T Consensus 17 ~rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 17 CRLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 3444455555555444443
No 437
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.01 E-value=2.3e+02 Score=27.67 Aligned_cols=115 Identities=12% Similarity=0.082 Sum_probs=55.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHhhhcC----CCCHHHHHHHHHHHhccCCH--HHHHHHHHHHHhcCCCCCHHHHHH-
Q 018782 12 DLDQLLHALCKRKHVKVAHQFFDNAKHEF----TPTVKTYSILVRGLGDVGEL--SEARKLFDEMLERKCPVDILAHNS- 84 (350)
Q Consensus 12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~- 84 (350)
-|..|+..|...|+.++|+++|..+..+. ..-...+..++..+-..+.. +-.+++-+...+....-....+..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 35667777777777777777777765532 11122233344444444433 444444444333321111111111
Q ss_pred -----------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 018782 85 -----------LLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE 126 (350)
Q Consensus 85 -----------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 126 (350)
.+-.|......+-+..+++.+....-.++....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 122344555566666666666654444455555566655543
No 438
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=52.65 E-value=3.5e+02 Score=29.73 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782 219 RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG 285 (350)
Q Consensus 219 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 285 (350)
..+|....+....+|+++.|...+-...+.+ .|....=. ..-.... |+...|+.++++-.+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~--AK~lW~~-gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLER--AKLLWQT-GDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHH--HHHHHhh-ccHHHHHHHHHHHHHhh
Confidence 4678888888888999999998887777664 33333222 2222334 89999999999877554
No 439
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=52.49 E-value=32 Score=29.66 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=31.0
Q ss_pred HHHHHHHccCChHHHHHHHHHhhhc--------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 018782 15 QLLHALCKRKHVKVAHQFFDNAKHE--------FTPTVKTYSILVRGLGDVGELSEARKLFDEML 71 (350)
Q Consensus 15 ~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 71 (350)
.|++.++-.|++..|+++++.+.-+ .+-...++..+.-+|.-.+++.+|.+.|....
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666667777777766665220 11233445555555555566666666655543
No 440
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=50.85 E-value=1.4e+02 Score=24.69 Aligned_cols=14 Identities=14% Similarity=0.327 Sum_probs=7.9
Q ss_pred CcCHhhHHHHHHHH
Q 018782 7 KPSIYDLDQLLHAL 20 (350)
Q Consensus 7 ~p~~~~~~~l~~~~ 20 (350)
.|....++.+|+-|
T Consensus 108 ~~~~qvf~KliRRy 121 (412)
T KOG2297|consen 108 RNSVQVFQKLIRRY 121 (412)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555666666544
No 441
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=50.51 E-value=63 Score=28.38 Aligned_cols=103 Identities=10% Similarity=0.065 Sum_probs=54.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc-HHHHHHHHHHHHccC
Q 018782 86 LEAMCKAGNIDEAHGMLREMRSIGAEPDAFS-YSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN-VFTYNCIIRKLCKNE 163 (350)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 163 (350)
+..+...+.++.|..++.+.++. .||... |..-..++.+.+++..|+.=+..+++.. |+ ...|.--..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 34455666777777777777774 454433 3333366677777777776666666543 22 122222223333334
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 018782 164 KVEEAYQLLDEMIERGANPDEWSYNAILAYH 194 (350)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 194 (350)
.+.+|...|+..... .|+..-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 455555555554443 45555554444433
No 442
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=50.39 E-value=45 Score=27.52 Aligned_cols=78 Identities=8% Similarity=0.090 Sum_probs=42.8
Q ss_pred CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC-HHHHHH-HHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHH
Q 018782 216 MPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPS-VSTYSV-MVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTV 293 (350)
Q Consensus 216 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~-ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 293 (350)
..|+..|...+.--.+.+.+.+...+|.+..+. .|+ +..|-. .-.-+... ++++.+..+|....+.+ +.++..|
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k--hP~nvdlWI~~c~~e~~~~-ani~s~Ra~f~~glR~N-~~~p~iw 179 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK--HPLNVDLWIYCCAFELFEI-ANIESSRAMFLKGLRMN-SRSPRIW 179 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCceeeeeeccchhhhh-ccHHHHHHHHHhhhccC-CCCchHH
Confidence 345556666665555666777777777776654 233 222211 11112223 67777777777776665 4455555
Q ss_pred HHHH
Q 018782 294 EMLR 297 (350)
Q Consensus 294 ~~l~ 297 (350)
....
T Consensus 180 ~eyf 183 (435)
T COG5191 180 IEYF 183 (435)
T ss_pred HHHH
Confidence 4443
No 443
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=50.35 E-value=47 Score=18.97 Aligned_cols=35 Identities=9% Similarity=0.167 Sum_probs=19.8
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782 225 VLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMV 261 (350)
Q Consensus 225 l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll 261 (350)
+.-++.+.|++++|.+..+.+.+. .|+..-...|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHH
Confidence 445566677777777777776664 55555444443
No 444
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.54 E-value=2.1e+02 Score=26.18 Aligned_cols=154 Identities=13% Similarity=0.139 Sum_probs=93.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCC---------CH---hhHHHHHHHHHhcCCHhHHHHH-------HHHHhhCCCC------
Q 018782 92 AGNIDEAHGMLREMRSIGAEP---------DA---FSYSIFIHAFCEANDIHSVFRV-------LDSMKRYNLV------ 146 (350)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~---------~~---~~~~~l~~~~~~~~~~~~a~~~-------~~~~~~~~~~------ 146 (350)
...+++|...|...... ..| ++ .+.-.+..++...|+.+.+-.+ |+......+.
T Consensus 251 s~sYeqaq~~F~~av~~-~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIV-HDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred chHHHHHHHHHHHHHhh-cCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 34466777777666543 122 22 3344455667777876555444 4444332222
Q ss_pred -------ccHHHHHHH---HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-cccCHHHHHHHHHHHHhCC-
Q 018782 147 -------PNVFTYNCI---IRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHC-DRAEVNMALRLITRMTKEN- 214 (350)
Q Consensus 147 -------~~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~- 214 (350)
-|...|-++ +..+.+.|.+..|+++.+-+....+.-|+.....+|..|+ +..++.-.+++++.....+
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~ 409 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNK 409 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Confidence 123334333 4556778999999999999998876667888888888876 7778888888887775442
Q ss_pred --CCCChhHHH-HHHHHHHHcCC---HhHHHHHHHHHHh
Q 018782 215 --VMPDRHTYN-MVLKLLVRVGR---FDRATEVWESMEK 247 (350)
Q Consensus 215 --~~~~~~~~~-~l~~~~~~~~~---~~~a~~~~~~~~~ 247 (350)
.-|| ..|. .|...|..... -+.|...+.++..
T Consensus 410 l~~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 410 LSQLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred HhhcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 3355 3444 44445554444 4456665555544
No 445
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=49.27 E-value=1.1e+02 Score=22.78 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=22.2
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 018782 190 ILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGR 234 (350)
Q Consensus 190 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 234 (350)
++..+...++.-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 31 IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 31 VLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 333333334445555666665555544444444444455555543
No 446
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=49.01 E-value=79 Score=21.14 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=25.5
Q ss_pred HHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782 228 LLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG 285 (350)
Q Consensus 228 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 285 (350)
.+...|++++|..+.+.. ..||...|..+-.. +.|..+.+..-+.+|-..|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~---rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW---RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHHH---hhccHHHHHHHHHHHHhCC
Confidence 344555565555555444 24555555554432 2255555555555555554
No 447
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=48.77 E-value=58 Score=22.10 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018782 58 GELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG 93 (350)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 93 (350)
+..-.|.++++.+.+.+..++..|....+..+...|
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 334444555555544444444444333444444433
No 448
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=48.39 E-value=1.6e+02 Score=24.46 Aligned_cols=73 Identities=14% Similarity=0.360 Sum_probs=34.8
Q ss_pred cccCHHHHHHHHHH-HHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHH-HHhcCCCCCHHHHHHHHHHHhhccCcHHH
Q 018782 196 DRAEVNMALRLITR-MTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWES-MEKRGFYPSVSTYSVMVHGLCKKKGKLEE 273 (350)
Q Consensus 196 ~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 273 (350)
+...+++.....++ |.+.++ |++.....+-.+......|.+-.++..+ ..+ ...+|..++.++|.. |+.+.
T Consensus 267 ~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalr-----hlK~yaPLL~af~s~-g~sEL 339 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQ-GQSEL 339 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcC-ChHHH
Confidence 34445555444443 445444 5554433333333334444433332222 222 234577788888766 77655
Q ss_pred HH
Q 018782 274 AC 275 (350)
Q Consensus 274 a~ 275 (350)
.+
T Consensus 340 ~L 341 (412)
T KOG2297|consen 340 EL 341 (412)
T ss_pred HH
Confidence 43
No 449
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=48.23 E-value=1.4e+02 Score=23.73 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=31.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 018782 49 ILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK-AGNIDEAHGMLREMR 106 (350)
Q Consensus 49 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 106 (350)
.++..+-+.|+++++...+.++...+...+..--+.+-.+|-. -|....+++++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 4555666677777777777777777666666665555555422 233344444444443
No 450
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=48.10 E-value=73 Score=20.49 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 018782 100 GMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSM 140 (350)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 140 (350)
++|+-....|+..|+..|..++......=..+...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44555555555555555555555444444444444444444
No 451
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=48.05 E-value=1.4e+02 Score=23.75 Aligned_cols=105 Identities=16% Similarity=0.191 Sum_probs=58.3
Q ss_pred HhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc-C-----------CCCCHHHHHHHH
Q 018782 194 HCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR-G-----------FYPSVSTYSVMV 261 (350)
Q Consensus 194 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-----------~~p~~~~~~~ll 261 (350)
|.+..+..--.++.+-....++.-+..-...++ +...|+..+|...++.-... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 344444444444444444444443433343332 34456666666666554321 1 146677777777
Q ss_pred HHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 018782 262 HGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGL 303 (350)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 303 (350)
..+. . +++++|.+++.++-+.|+.| ......+.+.+...
T Consensus 247 ~~~~-~-~~~~~A~~il~~lw~lgysp-~Dii~~~FRv~K~~ 285 (333)
T KOG0991|consen 247 QACL-K-RNIDEALKILAELWKLGYSP-EDIITTLFRVVKNM 285 (333)
T ss_pred HHHH-h-ccHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhc
Confidence 7643 4 68888888888888888655 44555555555443
No 452
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=47.53 E-value=95 Score=21.68 Aligned_cols=20 Identities=15% Similarity=0.011 Sum_probs=7.3
Q ss_pred HHHHHHHHcCCChhHHHHHH
Q 018782 294 EMLRNRLVGLGFLDIIEILA 313 (350)
Q Consensus 294 ~~l~~~~~~~g~~~~a~~~~ 313 (350)
......+...|++++|.+++
T Consensus 103 ~~wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 103 EEWAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 33333333334444443333
No 453
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=47.44 E-value=4.3e+02 Score=29.18 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=76.4
Q ss_pred HHHHHHHccCChHHHHHHHHHhhh---cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018782 15 QLLHALCKRKHVKVAHQFFDNAKH---EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK 91 (350)
Q Consensus 15 ~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (350)
.+..+-.+.+.+.+|...++.-.. ........|..+...|+..+++|...-+...-.. +...+ .-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 344455678889999999988421 1112334455555689999999988877764111 22222 34445667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHh
Q 018782 92 AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMK 141 (350)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 141 (350)
.|+++.|...|+++.+.+ ++...+++-++..-...|.++.++-..+-..
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~ 1510 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLI 1510 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchh
Confidence 899999999999999874 2335566666666666666666555444443
No 454
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.10 E-value=2.1e+02 Score=25.59 Aligned_cols=277 Identities=9% Similarity=0.029 Sum_probs=140.5
Q ss_pred HccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHH--HHHHHHHHhcCCCC-----------CHHHHHHHH
Q 018782 21 CKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEA--RKLFDEMLERKCPV-----------DILAHNSLL 86 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~~~~~~~~~~-----------~~~~~~~l~ 86 (350)
...+.++..++++..+.. +.......++..+..|.+.|..... ++-++.+...-..| ....+....
T Consensus 28 f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~a 107 (696)
T KOG2471|consen 28 FNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFA 107 (696)
T ss_pred cCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhh
Confidence 457889999999988866 4444555588888888887765432 23333332211111 122222333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHh-----hHHHHHHHHHhcCCHhHHHHHH---HHHhhCC--------------
Q 018782 87 EAMCKAGNIDEAHGMLREMRSIGAEPDAF-----SYSIFIHAFCEANDIHSVFRVL---DSMKRYN-------------- 144 (350)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~---~~~~~~~-------------- 144 (350)
-.+.....+..|+++...+... ++|=.. ........+....+.++|+.++ .++...+
T Consensus 108 Vi~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~ 186 (696)
T KOG2471|consen 108 VIFYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNL 186 (696)
T ss_pred eeeeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhh
Confidence 3344455566666665555432 111111 1112233444555556665544 3443221
Q ss_pred ---CCccHHHHHHH------------HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHhcccCHHHHHHHHH
Q 018782 145 ---LVPNVFTYNCI------------IRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAI-LAYHCDRAEVNMALRLIT 208 (350)
Q Consensus 145 ---~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~ 208 (350)
.+|+...-..+ +.++....+...+..-.+... ++.-|...+..+ -..+.-.|++.+|.+++-
T Consensus 187 ~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vm--n~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~ 264 (696)
T KOG2471|consen 187 LKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVM--NIAQDSSMALLLKSQLEYAHGNHPKAMKLLL 264 (696)
T ss_pred cccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhh--hhcCCCcHHHHHHHHHHHHhcchHHHHHHHH
Confidence 01111111111 111111111111111111111 111122222222 233456789999998886
Q ss_pred HHHhC---CCCCC-----hhHHHHHHHHHHHcCCHhHHHHHHHHHHh-------cCCCCC-----------HHHHHHHHH
Q 018782 209 RMTKE---NVMPD-----RHTYNMVLKLLVRVGRFDRATEVWESMEK-------RGFYPS-----------VSTYSVMVH 262 (350)
Q Consensus 209 ~~~~~---~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~p~-----------~~~~~~ll~ 262 (350)
..--. |...+ -..||.+.-.+.+.|.+..+..+|....+ .|++|. ..+||.=+.
T Consensus 265 ~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~ 344 (696)
T KOG2471|consen 265 VSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLL 344 (696)
T ss_pred hcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHH
Confidence 54221 21112 12245666666677777777777766653 355543 345665553
Q ss_pred HHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Q 018782 263 GLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGL 303 (350)
Q Consensus 263 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 303 (350)
|... |++-.|.+.|.+.... +..++..|..+..+|...
T Consensus 345 -~Lh~-grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 345 -YLHS-GRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred -HHhc-CCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 3434 9999999999998765 467899999999999754
No 455
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=47.00 E-value=1.4e+02 Score=23.62 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-hcCCHhHHHHHHHHH
Q 018782 84 SLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFC-EANDIHSVFRVLDSM 140 (350)
Q Consensus 84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 140 (350)
.++..+-..++++++...+.++...+...+..--+.+-.+|- ..|....+.+++..+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~ 63 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSI 63 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhH
Confidence 456667778888888888888888776666665665555552 234444455555554
No 456
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=46.68 E-value=1.5e+02 Score=23.63 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=28.7
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 018782 146 VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYH 194 (350)
Q Consensus 146 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 194 (350)
.|.+.....++..+. .+++++|.+++.++.+.|..|. ...+.+.+.+
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~-Dii~~~FRv~ 282 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE-DIITTLFRVV 282 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH-HHHHHHHHHH
Confidence 366666666665544 3577788888888777777643 3344444443
No 457
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=46.60 E-value=1.3e+02 Score=25.24 Aligned_cols=90 Identities=14% Similarity=0.050 Sum_probs=56.0
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCC---CCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHh
Q 018782 190 ILAYHCDRAEVNMALRLITRMTKENV---MPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSV-STYSVMVHGLC 265 (350)
Q Consensus 190 ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~ 265 (350)
=.+-|.+..++..|...|..-++... ..+...|+.-..+-...|++..|+.=....... .|+. ..|..-..++.
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R~Akc~~ 164 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIRGAKCLL 164 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--CcchhhhhhhhhHHHH
Confidence 34557888888889888888766532 234556766666667778888888877777764 4432 22222222333
Q ss_pred hccCcHHHHHHHHHHHH
Q 018782 266 KKKGKLEEACKYFEMMV 282 (350)
Q Consensus 266 ~~~~~~~~a~~~~~~~~ 282 (350)
.. .++.+|..+.++..
T Consensus 165 eL-e~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 165 EL-ERFAEAVNWCEEGL 180 (390)
T ss_pred HH-HHHHHHHHHHhhhh
Confidence 33 56677777666553
No 458
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=46.54 E-value=69 Score=19.78 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC
Q 018782 25 HVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVG 58 (350)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 58 (350)
+.+.|.+++..++.....++..||++...+.+++
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHk 45 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHK 45 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHcc
Confidence 5677888888888777778888888887776543
No 459
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=46.05 E-value=2.3e+02 Score=25.70 Aligned_cols=59 Identities=15% Similarity=0.192 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHH---HHHHHHHHHccCCHHHHHHHHHHHHHc
Q 018782 118 SIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFT---YNCIIRKLCKNEKVEEAYQLLDEMIER 178 (350)
Q Consensus 118 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (350)
..++.-|.+.+++++|..++..|.=.- ..... .+.+++.+.+..--++.+..++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~--~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNT--MGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccc--cHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 456667778888888888877774321 11222 233334444443334444444444443
No 460
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=45.59 E-value=85 Score=25.94 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=29.7
Q ss_pred HHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782 230 VRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE 284 (350)
Q Consensus 230 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 284 (350)
.+.|+.++|..+|+..... .|+..-.-.=+..+....+++-+|-.++-+....
T Consensus 127 ~~~Gk~ekA~~lfeHAlal--aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALAL--APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HhccchHHHHHHHHHHHhc--CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 4567788888888777764 4443333222233333435566666666655444
No 461
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=45.54 E-value=1.9e+02 Score=24.49 Aligned_cols=96 Identities=8% Similarity=-0.041 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhc----CCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHH-----H
Q 018782 222 YNMVLKLLVRVGRFDRATEVWESMEKR----GFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSS-----T 292 (350)
Q Consensus 222 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~ 292 (350)
...+.+.+.+.|+.++-..+....+.. +-.-.......++..+....+..+.-+.+..++++.-..-+.. .
T Consensus 51 Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~L 130 (411)
T KOG1463|consen 51 ILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSL 130 (411)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344555566666666555555444321 1111233444555555544455555555555555443222221 2
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhh
Q 018782 293 VEMLRNRLVGLGFLDIIEILADKME 317 (350)
Q Consensus 293 ~~~l~~~~~~~g~~~~a~~~~~~~~ 317 (350)
-..++..|...+++.+|..+...+.
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~ 155 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLL 155 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 2456788888888888887666553
No 462
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=45.30 E-value=36 Score=20.46 Aligned_cols=50 Identities=10% Similarity=0.146 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782 42 PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA 92 (350)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (350)
|....++.++...++..-.++++..+.+..+.|. .+..+|..-++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666654 3556666555555543
No 463
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.53 E-value=78 Score=30.36 Aligned_cols=49 Identities=18% Similarity=0.089 Sum_probs=38.7
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782 53 GLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 107 (350)
.+..+|+++.|++.-.++- +..+|..|.....+.|+.+-|+..|++.+.
T Consensus 652 LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 4456778888777655432 678999999999999999999999988765
No 464
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=44.42 E-value=69 Score=21.72 Aligned_cols=36 Identities=22% Similarity=0.148 Sum_probs=16.6
Q ss_pred cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 018782 198 AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVG 233 (350)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 233 (350)
+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 334445555555554444444444444444444444
No 465
>PRK11619 lytic murein transglycosylase; Provisional
Probab=44.31 E-value=2.8e+02 Score=26.14 Aligned_cols=242 Identities=8% Similarity=0.014 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 018782 59 ELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLD 138 (350)
Q Consensus 59 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 138 (350)
.+++...++++-... +.....-...+..+.+.+++...+.++.. .+.+...-.....+....|+.++|....+
T Consensus 81 ~~~ev~~Fl~~~~~~--P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~ 153 (644)
T PRK11619 81 PAVQVTNFIRANPTL--PPARSLQSRFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAK 153 (644)
T ss_pred CHHHHHHHHHHCCCC--chHHHHHHHHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555443321 22233333445556677777776663321 24455555667778888898888877777
Q ss_pred HHhhCCCCccHHHHHHHHHHHHccCCHHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHh------------cccCHHHHH
Q 018782 139 SMKRYNLVPNVFTYNCIIRKLCKNEKVEE--AYQLLDEMIERGANPDEWSYNAILAYHC------------DRAEVNMAL 204 (350)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--a~~~~~~~~~~~~~~~~~~~~~ll~~~~------------~~~~~~~a~ 204 (350)
.+-..| ......++.++..+.+.|.+.. ..+-++.+...| +...-..+..... -..+...+.
T Consensus 154 ~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~ 229 (644)
T PRK11619 154 ELWLTG-KSLPNACDKLFSVWQQSGKQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVE 229 (644)
T ss_pred HHhccC-CCCChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHH
Confidence 776555 3456677788888776665433 223333333322 2222222222110 011112221
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHH--HHcCCHhHHHHHHHHHHhcC-CCCCHH--HHHHHHHHHhhccCcHHHHHHHHH
Q 018782 205 RLITRMTKENVMPDRHTYNMVLKLL--VRVGRFDRATEVWESMEKRG-FYPSVS--TYSVMVHGLCKKKGKLEEACKYFE 279 (350)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~-~~p~~~--~~~~ll~~~~~~~~~~~~a~~~~~ 279 (350)
..+.. +.++...-..++.++ ....+.+.|..++....... +.+... ....+....... +...++...++
T Consensus 230 ~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~-~~~~~a~~w~~ 303 (644)
T PRK11619 230 TFART-----TGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGN-DVTDEQAKWRD 303 (644)
T ss_pred HHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 11111 112321111122222 23456789999999875432 222221 222332222221 12566777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782 280 MMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 280 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
...... .+......-++...+.++++.+...+..|...
T Consensus 304 ~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~ 341 (644)
T PRK11619 304 DVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPME 341 (644)
T ss_pred hccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHh
Confidence 654332 35556666667777899999999999998654
No 466
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=43.75 E-value=1.7e+02 Score=23.60 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=14.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHhh
Q 018782 14 DQLLHALCKRKHVKVAHQFFDNAK 37 (350)
Q Consensus 14 ~~l~~~~~~~g~~~~a~~~~~~~~ 37 (350)
+.++..+.+.+....|..+.+.+.
T Consensus 86 ~~iL~~lL~~~~~~~a~~i~~~y~ 109 (258)
T PF07064_consen 86 HHILRHLLRRNLDEEALEIASKYR 109 (258)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhc
Confidence 455566666666666666665554
No 467
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=43.67 E-value=2.2e+02 Score=28.16 Aligned_cols=70 Identities=13% Similarity=0.208 Sum_probs=42.7
Q ss_pred HcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 018782 231 RVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL 300 (350)
Q Consensus 231 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (350)
....+.+++++|..|...|+.+....|...........+.+.+|..+|+.-++....|....-..+....
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~ 159 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQ 159 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 5566777777777777777666655555444444444467777777777776665566555444443333
No 468
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.53 E-value=1e+02 Score=20.86 Aligned_cols=27 Identities=15% Similarity=0.268 Sum_probs=21.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018782 151 TYNCIIRKLCKNEKVEEAYQLLDEMIE 177 (350)
Q Consensus 151 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (350)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777888888888888888887766
No 469
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=42.83 E-value=53 Score=22.55 Aligned_cols=21 Identities=10% Similarity=0.292 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhcCCCCCHH
Q 018782 60 LSEARKLFDEMLERKCPVDIL 80 (350)
Q Consensus 60 ~~~a~~~~~~~~~~~~~~~~~ 80 (350)
.-.|.++++.+.+.+...+..
T Consensus 23 ~~ta~ei~~~l~~~~~~is~~ 43 (120)
T PF01475_consen 23 HLTAEEIYDKLRKKGPRISLA 43 (120)
T ss_dssp SEEHHHHHHHHHHTTTT--HH
T ss_pred CCCHHHHHHHhhhccCCcCHH
Confidence 344444444444444333333
No 470
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.72 E-value=2.5e+02 Score=25.18 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=16.6
Q ss_pred hcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 018782 126 EANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRK 158 (350)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (350)
+.++.+.|..++..+...|..|....-..+..+
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~ 287 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDL 287 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 335566666666666555544444433333333
No 471
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.63 E-value=3.3e+02 Score=26.46 Aligned_cols=19 Identities=5% Similarity=-0.197 Sum_probs=10.2
Q ss_pred CCCHHHHHHHHHHHHcCCC
Q 018782 287 PPYSSTVEMLRNRLVGLGF 305 (350)
Q Consensus 287 ~~~~~~~~~l~~~~~~~g~ 305 (350)
..++..++.++..|++..+
T Consensus 625 ~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 625 MTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred CcCHHHHHHHHHHhhcCCc
Confidence 3455566666655554443
No 472
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=42.45 E-value=1.2e+02 Score=21.24 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHH
Q 018782 97 EAHGMLREMRSIGAEPD-AFSYSIFIHAFCEANDIHSVFRVLDS 139 (350)
Q Consensus 97 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~ 139 (350)
.+.++|..|...|+-.. +..|......+...|++++|..+|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666665554322 33455555666666666666666654
No 473
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=42.43 E-value=1.5e+02 Score=22.63 Aligned_cols=170 Identities=11% Similarity=0.131 Sum_probs=0.0
Q ss_pred CCCCCcCHhhHHHHHHHHHc----cCChHHHHHHHHHh-----hhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782 3 EFGIKPSIYDLDQLLHALCK----RKHVKVAHQFFDNA-----KHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 3 ~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
+.|+-++++.++.++..+.+ .+.++.+..+=.+. ..+..-+......-+..|-+.|++.+.-.+|-.....
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~g 80 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMG 80 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhh
Q ss_pred CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH-------HHHhcCCHhHHHHHHHHH
Q 018782 74 KCPVD------ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIH-------AFCEANDIHSVFRVLDSM 140 (350)
Q Consensus 74 ~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~a~~~~~~~ 140 (350)
--.+. ...-.+|..-+-. +..--...|.+..-..++.|...-+.|.+ .|.+..+|.+..++++.|
T Consensus 81 ce~~~dlq~~~~~va~~Ltkd~Kd--k~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l 158 (233)
T PF14669_consen 81 CEKFADLQRFCACVAEALTKDSKD--KPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKL 158 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccc--cCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhC--------------CCCccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 018782 141 KRY--------------NLVPNVFTYNCIIRKLCKNEKVEEAYQLLDE 174 (350)
Q Consensus 141 ~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 174 (350)
.+. +..+.-...|.....+.+.|..+.|..++++
T Consensus 159 ~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 159 HELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 474
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.19 E-value=1.4e+02 Score=22.15 Aligned_cols=43 Identities=14% Similarity=0.065 Sum_probs=19.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 018782 86 LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN 128 (350)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (350)
+..+...++.-.|.++++.+.+.+...+..|..--+..+.+.|
T Consensus 32 L~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 32 LRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3333333444455555555555544444443333344444333
No 475
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=42.10 E-value=1.3e+02 Score=21.56 Aligned_cols=68 Identities=7% Similarity=0.018 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 018782 41 TPTVKTYSILVRGLGDVG---ELSEARKLFDEMLERK-CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI 108 (350)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 108 (350)
.++..+--.+.-++.+.. +..+.+.+++.+.+.. ..-......-|.-++.+.++++.++++.+.+.+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344555555555555554 3455666777776522 2223444455666777778888888877777764
No 476
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=41.87 E-value=1.9e+02 Score=25.17 Aligned_cols=61 Identities=11% Similarity=-0.023 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018782 45 KTYSILVRGLGDVGELSEARKLFDEMLER--KCPVDILAHNSLLEAMCKAGNIDEAHGMLREM 105 (350)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 105 (350)
.+...|++...-.|+.+...+.++.+++. |..|.-.+-.-+.-+|.-.+++.+|.+.|-..
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566655555555555542 11222111133445555556666666655544
No 477
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=41.87 E-value=2.3e+02 Score=24.50 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=9.1
Q ss_pred cccCHHHHHHHHHHHHhC
Q 018782 196 DRAEVNMALRLITRMTKE 213 (350)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~ 213 (350)
+.+++..|.++++.+...
T Consensus 143 n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR 160 (379)
T ss_pred hcCCHHHHHHHHHHHHHh
Confidence 445555555555555443
No 478
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=41.68 E-value=1.4e+02 Score=26.36 Aligned_cols=109 Identities=24% Similarity=0.287 Sum_probs=52.1
Q ss_pred HHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCH
Q 018782 19 ALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD---ILAHNSLLEAMCKAGNI 95 (350)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 95 (350)
+.+..|.++-...+.+.- ..+..+..+-..=+++.|-.|.++-+..+. +.|..|+ ..-.+.|+-++. .|..
T Consensus 90 aAsaAGHl~vVk~L~~~g-a~VN~tT~TNStPLraACfDG~leivKyLv----E~gad~~IanrhGhTcLmIa~y-kGh~ 163 (615)
T KOG0508|consen 90 AASAAGHLEVVKLLLRRG-ASVNDTTRTNSTPLRAACFDGHLEIVKYLV----EHGADPEIANRHGHTCLMIACY-KGHV 163 (615)
T ss_pred HHhccCcHHHHHHHHHhc-CccccccccCCccHHHHHhcchhHHHHHHH----HcCCCCcccccCCCeeEEeeec-cCch
Confidence 344566666665555554 222223333334455555566655444443 4444332 222222332222 3444
Q ss_pred HHHHHHHHHHHhCCCCCCHhhH--HHHHHHHHhcCCHhHHHHHH
Q 018782 96 DEAHGMLREMRSIGAEPDAFSY--SIFIHAFCEANDIHSVFRVL 137 (350)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~ 137 (350)
+-+ +.+.+.|..++..++ |..+.-|+..|.++-..-++
T Consensus 164 ~I~----qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll 203 (615)
T KOG0508|consen 164 DIA----QYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLL 203 (615)
T ss_pred HHH----HHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHH
Confidence 443 344445555555444 56677777777766544443
No 479
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=41.11 E-value=65 Score=22.09 Aligned_cols=34 Identities=21% Similarity=0.110 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc
Q 018782 199 EVNMALRLITRMTKENVMPDRHTYNMVLKLLVRV 232 (350)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 232 (350)
.+-.|.++++.+.+.+...+..|...-++.+...
T Consensus 22 ~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 55 (120)
T PF01475_consen 22 EHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEA 55 (120)
T ss_dssp SSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHC
Confidence 3444444444444444333333333333333333
No 480
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=41.04 E-value=2e+02 Score=23.65 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcccCHHHHHHHHH
Q 018782 186 SYNAILAYHCDRAEVNMALRLIT 208 (350)
Q Consensus 186 ~~~~ll~~~~~~~~~~~a~~~~~ 208 (350)
.+..+...|++.++.+.+.++..
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~ 139 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMR 139 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHH
Confidence 34444444554444444444433
No 481
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.00 E-value=1.1e+02 Score=20.55 Aligned_cols=61 Identities=13% Similarity=0.081 Sum_probs=32.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHhcCC
Q 018782 14 DQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVG--ELSEARKLFDEMLERKC 75 (350)
Q Consensus 14 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~ 75 (350)
..++.-|...|+.++|..-+.++... .........++......+ .-+....++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 34556666778888888888776433 233344444444444442 23334555566655543
No 482
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.57 E-value=2.5e+02 Score=26.14 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=59.3
Q ss_pred HccCChHHHHHHHHHhhhcCCCC------HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018782 21 CKRKHVKVAHQFFDNAKHEFTPT------VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGN 94 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (350)
.+..++..+.++|..-..-++.| ...+..|.-+|....+.+.|.+++++..+.... ++.+-..+.......+.
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhcc
Confidence 34567778888887744323322 234566777888889999999999999886322 44555556666777888
Q ss_pred HHHHHHHHHHHHh
Q 018782 95 IDEAHGMLREMRS 107 (350)
Q Consensus 95 ~~~a~~~~~~~~~ 107 (350)
.++|+........
T Consensus 444 Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 444 SEEALTCLQKIKS 456 (872)
T ss_pred hHHHHHHHHHHHh
Confidence 8888887776653
No 483
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=40.44 E-value=1.3e+02 Score=21.28 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=12.7
Q ss_pred HHHHcCCHhHHHHHHHHHHhcCC
Q 018782 228 LLVRVGRFDRATEVWESMEKRGF 250 (350)
Q Consensus 228 ~~~~~~~~~~a~~~~~~~~~~~~ 250 (350)
-+...|+++.|.++.+-+++.|.
T Consensus 57 W~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 57 WLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hhhcccCHHHHHHHHHHHHHcCC
Confidence 34455566666666555555543
No 484
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=39.92 E-value=1.3e+02 Score=21.06 Aligned_cols=18 Identities=11% Similarity=-0.012 Sum_probs=7.3
Q ss_pred HHHHHHcCCChhHHHHHH
Q 018782 296 LRNRLVGLGFLDIIEILA 313 (350)
Q Consensus 296 l~~~~~~~g~~~~a~~~~ 313 (350)
....+...|++.+|.+++
T Consensus 105 ~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 105 WAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 333333344444444443
No 485
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=39.83 E-value=1.8e+02 Score=22.67 Aligned_cols=50 Identities=12% Similarity=0.008 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCCCC----C-HhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782 95 IDEAHGMLREMRSIGAEP----D-AFSYSIFIHAFCEANDIHSVFRVLDSMKRYN 144 (350)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 144 (350)
...|.+.|.+..+....| + ....-.+.....+.|+.++|.+.|..+...+
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 456777777776543221 1 2233345566677788888888887776654
No 486
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=39.70 E-value=2.4e+02 Score=23.96 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 018782 59 ELSEARKLFDEMLERKCPVD----ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFC 125 (350)
Q Consensus 59 ~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (350)
-.++++.+++.+++. + |+ +..|-.+++.....|.++.++.+|+.+...|..|-...-..++....
T Consensus 118 p~eei~~~L~~li~~-I-P~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 118 PKEEILATLSDLIKN-I-PDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred CHHHHHHHHHHHHhc-C-chHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 345666667766654 2 23 34566677777777777788888888877777776655555555544
No 487
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=39.51 E-value=2.1e+02 Score=23.33 Aligned_cols=150 Identities=11% Similarity=0.037 Sum_probs=84.4
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----c
Q 018782 56 DVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK----AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE----A 127 (350)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 127 (350)
..+++..+...+......+ +......+...+.. ..+..+|.++|...-+.|.. .....|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcc
Confidence 4456777777777776643 22344444444443 34578888888877776642 233345555554 3
Q ss_pred CCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----c
Q 018782 128 NDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNE-------KVEEAYQLLDEMIERGANPDEWSYNAILAYHC----D 196 (350)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~ 196 (350)
.|..+|..+|+...+.|..+...+...+...|..-. +...|...+.++-..+ +......+...|. -
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 488889999999988875433222333444443321 2235666666666654 3333333333332 2
Q ss_pred ccCHHHHHHHHHHHHhCC
Q 018782 197 RAEVNMALRLITRMTKEN 214 (350)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~ 214 (350)
..+..+|...|....+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 345666666666666655
No 488
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=39.21 E-value=4.4e+02 Score=26.96 Aligned_cols=153 Identities=14% Similarity=0.139 Sum_probs=84.4
Q ss_pred HHhcCCHHHHHH------HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH-------hhCCCCccHHHHHHH
Q 018782 89 MCKAGNIDEAHG------MLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSM-------KRYNLVPNVFTYNCI 155 (350)
Q Consensus 89 ~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l 155 (350)
....|.+.++.+ ++...-..-.+.....|..+...+-+.++.++|+..-... .....+.+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 444555665555 4443222212344567778888888888888887765543 111222344556666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHhcccCHHHHHHHHHHHHhC-----CC--CCChhH
Q 018782 156 IRKLCKNEKVEEAYQLLDEMIER-----GA-NPD-EWSYNAILAYHCDRAEVNMALRLITRMTKE-----NV--MPDRHT 221 (350)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~ 221 (350)
.......+....|...+.+.... |. .|. ..+++.+-..+...++.+.|.++++.+... |. -.+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 55555666777777776665442 11 233 333343333344557778888887776553 11 123445
Q ss_pred HHHHHHHHHHcCCHhHHHHH
Q 018782 222 YNMVLKLLVRVGRFDRATEV 241 (350)
Q Consensus 222 ~~~l~~~~~~~~~~~~a~~~ 241 (350)
+..+.+.+...+++..|...
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ 1121 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEH 1121 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHH
Confidence 66666666666665555443
No 489
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=39.14 E-value=1.1e+02 Score=25.50 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=36.8
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHH-HHHHHhccCCHHHHHHHHHHHHhcC
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSI-LVRGLGDVGELSEARKLFDEMLERK 74 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (350)
|+..|...+....+.|.+.+...+|..+....|.++..|-. .-.-+...++++.+..+|.+-+..+
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N 172 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN 172 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC
Confidence 44455555555555556666666666666555666655543 2223344566666666666655543
No 490
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.46 E-value=1.5e+02 Score=21.34 Aligned_cols=34 Identities=21% Similarity=0.041 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 018782 200 VNMALRLITRMTKENVMPDRHTYNMVLKLLVRVG 233 (350)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 233 (350)
.-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444444444444443334343333344444443
No 491
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.36 E-value=4.6e+02 Score=26.65 Aligned_cols=53 Identities=6% Similarity=0.066 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCCHhHHHH
Q 018782 82 HNSLLEAMCKAGNIDEAHGMLREMRSIGAEPD----AFSYSIFIHAFCEANDIHSVFR 135 (350)
Q Consensus 82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~ 135 (350)
|...++.+-+.+..+.+.++-...++. ++++ ..+++.+.+.....|.+-+|..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ 1042 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYK 1042 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHH
Confidence 455566666666666666666555543 2221 2244555555555555555543
No 492
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.15 E-value=2.9e+02 Score=24.23 Aligned_cols=155 Identities=18% Similarity=0.173 Sum_probs=0.0
Q ss_pred CC-CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 018782 5 GI-KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHN 83 (350)
Q Consensus 5 g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 83 (350)
|+ ..+......++..+ .|+...++.+++.+... ...=..+...+++...... ...+...+.
T Consensus 170 ~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~---------------~~~It~~~v~~~~~~~~~~-~d~~~~~~~ 231 (413)
T PRK13342 170 GLVELDDEALDALARLA--NGDARRALNLLELAALG---------------VDSITLELLEEALQKRAAR-YDKDGDEHY 231 (413)
T ss_pred CCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc---------------cCCCCHHHHHHHHhhhhhc-cCCCccHHH
Q ss_pred HHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC-----HhHHHHHHHHHhhCCCCccHHHHHHH
Q 018782 84 SLLEAMCKA---GNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAND-----IHSVFRVLDSMKRYNLVPNVFTYNCI 155 (350)
Q Consensus 84 ~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (350)
.++.++.+. .+.+.|+..+..|.+.|..|....-..+..++-..|. ...|...++....-|.+-........
T Consensus 232 ~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~l~~~ 311 (413)
T PRK13342 232 DLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALAQA 311 (413)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Q ss_pred HHHHHccCCHHHHHHHHHHHHH
Q 018782 156 IRKLCKNEKVEEAYQLLDEMIE 177 (350)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~ 177 (350)
+-.++.+-+-..+...+....+
T Consensus 312 ~~~l~~~pksn~~~~a~~~a~~ 333 (413)
T PRK13342 312 VIYLALAPKSNAAYTAINAALA 333 (413)
T ss_pred HHHHHcCCCccHHHHHHHHHHH
No 493
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.86 E-value=3.2e+02 Score=24.62 Aligned_cols=109 Identities=12% Similarity=0.027 Sum_probs=57.9
Q ss_pred HHHHhccCCHHHHHHHHHHHH---hcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCH-
Q 018782 51 VRGLGDVGELSEARKLFDEML---ERKCPVD-----ILAHNSLLEAMCKAGNIDEAHGMLREMRS-------IGAEPDA- 114 (350)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~---~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~- 114 (350)
...+.-.|++.+|.+++...- ..|...+ -..||.|.-.+.+.|.+..+..+|....+ .|+.|..
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 344455677777777765432 1121111 11235555555556666555555555542 3433321
Q ss_pred ----------hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc
Q 018782 115 ----------FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK 161 (350)
Q Consensus 115 ----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (350)
.+|| ..-.+...|+.-.|.+.|...... +..++..|--|..+|..
T Consensus 327 ~tls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 327 FTLSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred eehhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 2233 333455667777777777776543 24566677777766643
No 494
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=36.55 E-value=94 Score=18.45 Aligned_cols=13 Identities=15% Similarity=0.243 Sum_probs=4.8
Q ss_pred cCChHHHHHHHHH
Q 018782 23 RKHVKVAHQFFDN 35 (350)
Q Consensus 23 ~g~~~~a~~~~~~ 35 (350)
.|++=+|.++++.
T Consensus 12 ~g~f~EaHEvlE~ 24 (62)
T PF03745_consen 12 AGDFFEAHEVLEE 24 (62)
T ss_dssp TT-HHHHHHHHHH
T ss_pred CCCHHHhHHHHHH
Confidence 3344444444443
No 495
>PF13934 ELYS: Nuclear pore complex assembly
Probab=36.54 E-value=2.1e+02 Score=22.52 Aligned_cols=71 Identities=13% Similarity=0.084 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 018782 119 IFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHC 195 (350)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 195 (350)
.++..+...|+.+.|..+++...-.. .+......++.. ..++.+.+|+.+-+...+.. ....+..++..+.
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHH
Confidence 35556666677777777766653321 122222233333 44566666666655544321 1334555555544
No 496
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=36.37 E-value=3.1e+02 Score=24.84 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=26.2
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLF 67 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 67 (350)
++.-|..++.-+...+++++|.++..... +...|..+.....+..+..-++..|
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrfv~-----eqTMWAtlAa~Av~~~~m~~~EiAY 625 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRFVQ-----EQTMWATLAAVAVRKHQMQISEIAY 625 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHhcc-----chHHHHHHHHHHHhhccccHHHHHH
Confidence 33345555555566666666666555443 2234444444444444444333333
No 497
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.16 E-value=3e+02 Score=24.10 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCH-hhHHHHHHHHHhcCCHhHHHHHHHHHh
Q 018782 83 NSLLEAMCKAGNIDEAHGMLREMRSI--GAEPDA-FSYSIFIHAFCEANDIHSVFRVLDSMK 141 (350)
Q Consensus 83 ~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 141 (350)
--|++...-.|++....+.++.+.+. |..|.. .| -.+.-+|...|++.+|.+.|-...
T Consensus 239 ~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VT-Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 239 LGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVT-YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEe-eehhHHHHHHHHHHHHHHHHHHHH
Confidence 34566677778877777777776543 222322 23 335666777788888888776653
No 498
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.15 E-value=2.2e+02 Score=22.68 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=9.3
Q ss_pred ccCCHHHHHHHHHHHHHc
Q 018782 161 KNEKVEEAYQLLDEMIER 178 (350)
Q Consensus 161 ~~g~~~~a~~~~~~~~~~ 178 (350)
..+++.+|+.+|+++...
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
No 499
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=35.58 E-value=3.6e+02 Score=24.89 Aligned_cols=199 Identities=14% Similarity=0.149 Sum_probs=110.0
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 018782 42 PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFI 121 (350)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 121 (350)
+.+..|..|++.+. .-+.+.-.++++++... . ...+..++.+....|......-+.+.+....+. +...-..+.
T Consensus 308 ~~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~~-~---~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~~~~ 381 (574)
T smart00638 308 PAAAKFLRLVRLLR-TLSEEQLEQLWRQLYEK-K---KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQLLA 381 (574)
T ss_pred chHHHHHHHHHHHH-hCCHHHHHHHHHHHHhC-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHHHHH
Confidence 45667777777764 44567777788877641 1 678888899999999876666666666554443 333333333
Q ss_pred HHHHhc-CCHhHHHHHHHHHhh-CCCCcc-------HHHHHHHHHHHHccCCH------HHHHHHHHHHHHcCC-CCCHH
Q 018782 122 HAFCEA-NDIHSVFRVLDSMKR-YNLVPN-------VFTYNCIIRKLCKNEKV------EEAYQLLDEMIERGA-NPDEW 185 (350)
Q Consensus 122 ~~~~~~-~~~~~a~~~~~~~~~-~~~~~~-------~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~-~~~~~ 185 (350)
....-. .-..+.++.+..+.+ ....+. ..+|..++.-++..... ++....+........ .-+..
T Consensus 382 ~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 461 (574)
T smart00638 382 VLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEE 461 (574)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCch
Confidence 333222 223334444444433 333333 34667777755554431 344444444332211 12333
Q ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc--CCHhHHHHHHHHHHh
Q 018782 186 SYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRV--GRFDRATEVWESMEK 247 (350)
Q Consensus 186 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~ 247 (350)
--...+.++...|....... +..........+...-...+.++.+. ...+.+..++-.+..
T Consensus 462 ~~~~~LkaLGN~g~~~~i~~-l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~ 524 (574)
T smart00638 462 EIQLYLKALGNAGHPSSIKV-LEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYL 524 (574)
T ss_pred heeeHHHhhhccCChhHHHH-HHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHc
Confidence 44567888888888665444 44333322334445555666677644 467777776666553
No 500
>PRK09462 fur ferric uptake regulator; Provisional
Probab=35.23 E-value=1.7e+02 Score=21.05 Aligned_cols=64 Identities=11% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 018782 65 KLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN 128 (350)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (350)
.+-+.+.+.|+.++..-...+-......+..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 3 ~~~~~l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 3 DNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred hHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Done!