Query 018782
Match_columns 350
No_of_seqs 586 out of 1838
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 05:58:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.9E-34 9.8E-39 247.8 24.6 185 46-230 28-221 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.3E-33 4.3E-38 243.8 25.4 197 2-198 17-224 (501)
3 2xpi_A Anaphase-promoting comp 100.0 2.2E-30 7.4E-35 231.8 38.0 310 4-321 194-547 (597)
4 2xpi_A Anaphase-promoting comp 100.0 3.4E-30 1.2E-34 230.6 36.0 333 7-346 114-537 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 5.9E-27 2E-31 198.5 39.8 307 13-326 36-375 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 5E-26 1.7E-30 192.8 39.0 303 16-325 5-340 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 1.5E-25 5E-30 193.7 38.7 312 7-327 23-366 (450)
8 3ieg_A DNAJ homolog subfamily 99.9 7.5E-23 2.6E-27 171.1 38.6 310 9-326 2-342 (359)
9 2y4t_A DNAJ homolog subfamily 99.9 1.8E-22 6.3E-27 174.2 35.9 300 7-315 57-405 (450)
10 2gw1_A Mitochondrial precursor 99.9 1.3E-22 4.5E-27 178.0 32.2 313 8-327 37-486 (514)
11 3hym_B Cell division cycle pro 99.9 4.1E-22 1.4E-26 164.7 33.1 293 6-305 18-320 (330)
12 2gw1_A Mitochondrial precursor 99.9 8.5E-22 2.9E-26 172.9 30.3 306 10-323 6-405 (514)
13 3hym_B Cell division cycle pro 99.9 5.8E-21 2E-25 157.8 31.5 283 39-328 17-308 (330)
14 3fp2_A TPR repeat-containing p 99.9 3.6E-21 1.2E-25 169.8 28.4 238 82-326 246-498 (537)
15 3ieg_A DNAJ homolog subfamily 99.9 1.6E-19 5.4E-24 150.8 34.8 289 7-302 34-352 (359)
16 1fch_A Peroxisomal targeting s 99.9 7.9E-21 2.7E-25 159.6 26.7 292 19-317 34-357 (368)
17 3fp2_A TPR repeat-containing p 99.9 2.9E-20 1E-24 164.1 31.2 303 10-320 25-408 (537)
18 4eqf_A PEX5-related protein; a 99.9 2.6E-20 8.8E-25 156.3 25.4 267 42-315 63-352 (365)
19 1fch_A Peroxisomal targeting s 99.9 1.1E-19 3.9E-24 152.5 28.3 267 9-281 63-356 (368)
20 3cv0_A Peroxisome targeting si 99.9 7E-20 2.4E-24 151.1 26.6 281 9-318 20-314 (327)
21 4eqf_A PEX5-related protein; a 99.9 1.4E-20 4.9E-25 157.9 22.6 237 78-319 64-310 (365)
22 3cv0_A Peroxisome targeting si 99.9 2E-19 7E-24 148.3 26.7 274 44-346 21-307 (327)
23 3mkr_A Coatomer subunit epsilo 99.8 6.2E-18 2.1E-22 136.7 28.8 274 18-311 7-286 (291)
24 3mkr_A Coatomer subunit epsilo 99.8 1.7E-18 6E-23 140.0 25.3 260 51-326 6-271 (291)
25 1b89_A Protein (clathrin heavy 99.8 1.6E-18 5.6E-23 143.6 17.3 268 8-312 30-304 (449)
26 2pl2_A Hypothetical conserved 99.8 1.5E-17 5.2E-22 128.7 21.7 199 7-210 2-211 (217)
27 3uq3_A Heat shock protein STI1 99.8 8.6E-17 2.9E-21 127.8 26.1 226 10-248 5-236 (258)
28 2ooe_A Cleavage stimulation fa 99.8 1.1E-15 3.7E-20 134.6 33.9 306 8-321 11-456 (530)
29 2xm6_A Protein corresponding t 99.8 1E-14 3.5E-19 127.2 39.5 291 10-321 75-434 (490)
30 3spa_A Mtrpol, DNA-directed RN 99.8 2.8E-19 9.6E-24 160.0 10.7 151 43-198 126-286 (1134)
31 2xm6_A Protein corresponding t 99.8 2.1E-14 7.3E-19 125.1 41.4 291 9-320 38-397 (490)
32 3uq3_A Heat shock protein STI1 99.8 2E-16 6.8E-21 125.7 25.8 225 81-320 7-237 (258)
33 3spa_A Mtrpol, DNA-directed RN 99.8 3.9E-19 1.3E-23 159.1 10.7 150 79-233 127-286 (1134)
34 1b89_A Protein (clathrin heavy 99.8 1.6E-18 5.5E-23 143.7 13.2 252 21-314 14-267 (449)
35 2pl2_A Hypothetical conserved 99.8 1.2E-16 4.1E-21 123.6 23.0 197 114-317 5-212 (217)
36 3u4t_A TPR repeat-containing p 99.8 4.1E-16 1.4E-20 125.1 26.4 236 10-248 3-250 (272)
37 4g1t_A Interferon-induced prot 99.8 8.7E-16 3E-20 133.3 29.1 313 9-326 93-466 (472)
38 1ouv_A Conserved hypothetical 99.8 8.3E-15 2.8E-19 117.6 32.0 228 79-325 6-257 (273)
39 2h6f_A Protein farnesyltransfe 99.8 9.4E-16 3.2E-20 128.1 26.7 229 11-245 98-344 (382)
40 3u4t_A TPR repeat-containing p 99.8 4.2E-16 1.5E-20 125.0 23.8 250 44-299 3-264 (272)
41 1ouv_A Conserved hypothetical 99.8 7.2E-15 2.5E-19 117.9 30.9 222 10-248 6-251 (273)
42 2ho1_A Type 4 fimbrial biogene 99.8 1.4E-15 4.8E-20 120.5 26.1 211 44-260 37-248 (252)
43 2vq2_A PILW, putative fimbrial 99.8 2.1E-15 7.2E-20 117.1 26.3 202 43-247 7-210 (225)
44 2vq2_A PILW, putative fimbrial 99.8 2.4E-15 8.1E-20 116.9 26.0 202 9-212 7-210 (225)
45 2h6f_A Protein farnesyltransfe 99.7 1.3E-15 4.5E-20 127.2 25.7 251 43-301 96-364 (382)
46 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.2E-16 4.1E-21 128.3 18.7 246 21-278 16-269 (275)
47 2ho1_A Type 4 fimbrial biogene 99.7 4.3E-15 1.5E-19 117.7 26.8 202 79-285 37-239 (252)
48 2q7f_A YRRB protein; TPR, prot 99.7 4.3E-16 1.5E-20 122.7 20.4 202 42-248 21-222 (243)
49 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.2E-15 4E-20 122.5 21.6 248 55-313 16-269 (275)
50 4g1t_A Interferon-induced prot 99.7 5.2E-14 1.8E-18 122.1 33.2 309 9-323 50-405 (472)
51 2q7f_A YRRB protein; TPR, prot 99.7 2.3E-15 7.7E-20 118.5 21.7 206 115-326 24-229 (243)
52 2ooe_A Cleavage stimulation fa 99.7 4.4E-13 1.5E-17 118.0 36.0 218 98-321 257-494 (530)
53 2ond_A Cleavage stimulation fa 99.7 9.3E-14 3.2E-18 113.5 29.3 218 27-248 33-270 (308)
54 3sf4_A G-protein-signaling mod 99.7 9.7E-16 3.3E-20 130.1 18.1 300 7-307 6-364 (406)
55 4a1s_A PINS, partner of inscut 99.7 1.2E-15 4.2E-20 129.9 16.5 275 43-319 47-372 (411)
56 4a1s_A PINS, partner of inscut 99.7 5.3E-15 1.8E-19 126.0 18.8 274 11-285 49-373 (411)
57 3ro2_A PINS homolog, G-protein 99.7 4E-15 1.4E-19 122.8 16.8 276 12-319 7-332 (338)
58 3vtx_A MAMA; tetratricopeptide 99.7 5.1E-14 1.8E-18 105.8 21.3 167 9-178 4-170 (184)
59 4abn_A Tetratricopeptide repea 99.7 1.7E-14 5.7E-19 124.9 20.9 216 59-281 83-318 (474)
60 3sf4_A G-protein-signaling mod 99.7 1.2E-14 4.2E-19 123.3 19.8 276 41-318 6-335 (406)
61 3ulq_A Response regulator aspa 99.7 5E-14 1.7E-18 118.8 23.0 294 20-318 22-367 (383)
62 3vtx_A MAMA; tetratricopeptide 99.6 1.4E-13 4.7E-18 103.5 21.9 166 43-212 4-169 (184)
63 3ro2_A PINS homolog, G-protein 99.6 1.4E-14 4.8E-19 119.5 17.7 244 46-319 7-292 (338)
64 1xi4_A Clathrin heavy chain; a 99.6 1.1E-12 3.8E-17 121.8 30.9 257 15-320 1054-1310(1630)
65 2ond_A Cleavage stimulation fa 99.6 2.6E-12 8.8E-17 104.9 29.0 237 43-285 7-271 (308)
66 3nf1_A KLC 1, kinesin light ch 99.6 5.9E-15 2E-19 120.5 13.2 169 9-177 26-223 (311)
67 4abn_A Tetratricopeptide repea 99.6 1.2E-13 4E-18 119.6 21.2 215 94-317 83-319 (474)
68 1xi4_A Clathrin heavy chain; a 99.6 5.2E-12 1.8E-16 117.4 32.6 254 22-311 1088-1376(1630)
69 3q15_A PSP28, response regulat 99.6 7E-13 2.4E-17 111.6 24.7 310 6-318 6-364 (378)
70 3nf1_A KLC 1, kinesin light ch 99.6 3.5E-14 1.2E-18 116.0 14.1 174 39-212 22-223 (311)
71 3e4b_A ALGK; tetratricopeptide 99.6 4.5E-12 1.5E-16 109.0 27.7 237 80-332 142-400 (452)
72 3e4b_A ALGK; tetratricopeptide 99.6 1.2E-12 4.2E-17 112.5 22.8 289 16-331 9-363 (452)
73 3as5_A MAMA; tetratricopeptide 99.6 1.4E-12 4.7E-17 97.8 20.0 164 12-178 10-173 (186)
74 4i17_A Hypothetical protein; T 99.5 4.5E-12 1.5E-16 98.7 22.1 196 8-214 5-210 (228)
75 3ulq_A Response regulator aspa 99.5 1.2E-12 4.2E-17 110.3 19.9 226 18-246 111-366 (383)
76 1hz4_A MALT regulatory protein 99.5 1.5E-11 5.2E-16 103.2 26.4 299 15-322 19-352 (373)
77 1hz4_A MALT regulatory protein 99.5 1.1E-11 3.8E-16 104.0 25.5 273 45-318 15-321 (373)
78 4gyw_A UDP-N-acetylglucosamine 99.5 1E-12 3.4E-17 118.4 20.1 167 8-177 7-173 (723)
79 4gyw_A UDP-N-acetylglucosamine 99.5 1.5E-12 5.1E-17 117.3 20.6 169 40-212 5-173 (723)
80 4i17_A Hypothetical protein; T 99.5 6.8E-11 2.3E-15 91.9 27.2 204 79-296 7-220 (228)
81 3as5_A MAMA; tetratricopeptide 99.5 5.8E-12 2E-16 94.3 19.9 164 45-212 9-172 (186)
82 3edt_B KLC 2, kinesin light ch 99.5 7.5E-13 2.6E-17 106.4 12.9 226 21-247 12-280 (283)
83 3q15_A PSP28, response regulat 99.4 2.8E-11 9.4E-16 101.8 21.7 224 19-246 110-363 (378)
84 4e6h_A MRNA 3'-END-processing 99.4 8.6E-10 2.9E-14 98.4 32.1 116 7-122 63-193 (679)
85 1qqe_A Vesicular transport pro 99.4 2E-11 6.7E-16 98.8 19.9 166 28-212 3-186 (292)
86 1qqe_A Vesicular transport pro 99.4 1.3E-11 4.4E-16 99.9 18.4 210 94-321 32-271 (292)
87 3mv2_B Coatomer subunit epsilo 99.4 1.3E-10 4.4E-15 92.5 23.5 144 98-246 85-238 (310)
88 3edt_B KLC 2, kinesin light ch 99.4 3.3E-12 1.1E-16 102.6 13.7 167 151-318 87-280 (283)
89 3qky_A Outer membrane assembly 99.4 7.9E-11 2.7E-15 93.6 20.3 208 9-237 14-250 (261)
90 3qky_A Outer membrane assembly 99.4 1.4E-10 4.9E-15 92.1 19.3 188 41-248 12-224 (261)
91 3urz_A Uncharacterized protein 99.3 1.4E-10 4.7E-15 88.8 18.3 164 11-178 5-186 (208)
92 2pzi_A Probable serine/threoni 99.3 6.3E-11 2.2E-15 107.1 16.7 154 21-178 402-563 (681)
93 2fo7_A Synthetic consensus TPR 99.3 3.9E-10 1.3E-14 79.4 17.4 127 48-177 5-131 (136)
94 2fo7_A Synthetic consensus TPR 99.3 2.8E-10 9.6E-15 80.1 16.5 132 11-144 2-133 (136)
95 4ga2_A E3 SUMO-protein ligase 99.3 5.1E-11 1.8E-15 86.0 12.0 146 16-164 3-149 (150)
96 3dra_A Protein farnesyltransfe 99.3 1.8E-08 6.3E-13 81.0 27.8 221 23-247 46-286 (306)
97 3urz_A Uncharacterized protein 99.3 5.7E-10 1.9E-14 85.3 18.2 130 120-255 60-191 (208)
98 3mv2_B Coatomer subunit epsilo 99.3 1.7E-09 5.9E-14 86.1 20.7 218 16-255 51-287 (310)
99 2yhc_A BAMD, UPF0169 lipoprote 99.3 1.9E-09 6.4E-14 83.5 20.2 187 9-214 3-214 (225)
100 2r5s_A Uncharacterized protein 99.2 2.3E-10 7.7E-15 85.1 13.8 162 12-176 8-171 (176)
101 3rjv_A Putative SEL1 repeat pr 99.2 3.2E-09 1.1E-13 81.4 20.6 176 98-285 5-198 (212)
102 3qou_A Protein YBBN; thioredox 99.2 8.3E-10 2.8E-14 88.9 18.0 167 76-246 114-282 (287)
103 2pzi_A Probable serine/threoni 99.2 7.6E-10 2.6E-14 100.1 19.2 186 125-317 402-603 (681)
104 3rjv_A Putative SEL1 repeat pr 99.2 4.4E-09 1.5E-13 80.6 20.7 175 63-249 5-198 (212)
105 2vsy_A XCC0866; transferase, g 99.2 6.1E-10 2.1E-14 98.9 17.8 156 23-181 2-160 (568)
106 3dra_A Protein farnesyltransfe 99.2 6.6E-08 2.3E-12 77.7 27.7 234 55-295 43-298 (306)
107 3qou_A Protein YBBN; thioredox 99.2 5.8E-10 2E-14 89.8 15.8 171 38-212 111-283 (287)
108 2yhc_A BAMD, UPF0169 lipoprote 99.2 3.3E-09 1.1E-13 82.1 19.2 189 113-323 3-217 (225)
109 2r5s_A Uncharacterized protein 99.2 3.3E-10 1.1E-14 84.2 12.9 159 47-209 9-169 (176)
110 4ga2_A E3 SUMO-protein ligase 99.2 2.1E-10 7.1E-15 82.8 10.1 143 51-197 4-147 (150)
111 2ifu_A Gamma-SNAP; membrane fu 99.2 2.2E-09 7.6E-14 87.3 17.2 200 22-246 3-222 (307)
112 4e6h_A MRNA 3'-END-processing 99.1 9.5E-09 3.3E-13 91.8 21.7 233 27-264 326-584 (679)
113 2vsy_A XCC0866; transferase, g 99.1 4.6E-09 1.6E-13 93.2 18.9 155 57-215 2-159 (568)
114 2ifu_A Gamma-SNAP; membrane fu 99.1 3.5E-09 1.2E-13 86.2 16.7 227 56-312 3-254 (307)
115 3q7a_A Farnesyltransferase alp 99.1 3.2E-07 1.1E-11 74.7 26.4 177 19-199 63-257 (349)
116 1hh8_A P67PHOX, NCF-2, neutrop 99.0 3.9E-08 1.4E-12 75.2 18.9 129 12-144 8-151 (213)
117 3u3w_A Transcriptional activat 99.0 3.1E-08 1.1E-12 80.0 17.8 202 6-212 42-265 (293)
118 3u3w_A Transcriptional activat 99.0 6.2E-08 2.1E-12 78.2 19.4 209 30-247 31-265 (293)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.0 4.6E-08 1.6E-12 74.8 17.8 129 46-180 8-152 (213)
120 3gyz_A Chaperone protein IPGC; 99.0 1.1E-08 3.8E-13 73.4 13.3 103 40-144 32-134 (151)
121 1a17_A Serine/threonine protei 99.0 3E-08 1E-12 72.4 16.0 127 46-175 15-143 (166)
122 2c2l_A CHIP, carboxy terminus 99.0 3.9E-09 1.3E-13 84.6 12.0 99 9-108 3-101 (281)
123 2uy1_A Cleavage stimulation fa 99.0 2E-06 6.8E-11 74.5 29.4 297 7-317 12-381 (493)
124 4gco_A Protein STI-1; structur 99.0 2.9E-08 9.8E-13 69.0 14.7 94 13-107 16-109 (126)
125 4gco_A Protein STI-1; structur 99.0 2E-08 6.9E-13 69.8 13.5 98 44-143 13-110 (126)
126 2vyi_A SGTA protein; chaperone 99.0 1.9E-08 6.7E-13 70.1 13.5 117 10-128 12-128 (131)
127 3q7a_A Farnesyltransferase alp 99.0 2E-06 7E-11 69.9 26.7 177 53-234 63-257 (349)
128 2lni_A Stress-induced-phosphop 99.0 3.4E-08 1.2E-12 69.1 14.6 100 8-108 14-113 (133)
129 3gyz_A Chaperone protein IPGC; 99.0 8.7E-09 3E-13 74.0 11.5 103 9-114 35-137 (151)
130 2c2l_A CHIP, carboxy terminus 99.0 1.2E-08 4.1E-13 81.8 13.6 195 78-283 3-198 (281)
131 2qfc_A PLCR protein; TPR, HTH, 99.0 1.1E-07 3.9E-12 76.7 19.4 202 6-212 42-265 (293)
132 1na0_A Designed protein CTPR3; 99.0 4.4E-08 1.5E-12 67.6 14.8 96 11-107 10-105 (125)
133 3gw4_A Uncharacterized protein 99.0 1.1E-08 3.6E-13 77.7 12.2 157 21-177 3-175 (203)
134 1p5q_A FKBP52, FK506-binding p 99.0 2.7E-09 9.2E-14 87.9 9.3 150 24-175 127-291 (336)
135 1a17_A Serine/threonine protei 99.0 7.2E-08 2.5E-12 70.4 16.2 93 14-107 17-109 (166)
136 2qfc_A PLCR protein; TPR, HTH, 98.9 5.9E-07 2E-11 72.5 22.6 168 79-246 75-264 (293)
137 2e2e_A Formate-dependent nitri 98.9 1.1E-08 3.8E-13 75.9 11.4 122 21-144 21-145 (177)
138 1na0_A Designed protein CTPR3; 98.9 1.4E-07 4.7E-12 65.0 15.2 98 44-143 9-106 (125)
139 2vyi_A SGTA protein; chaperone 98.9 6.4E-08 2.2E-12 67.4 13.2 120 42-164 10-129 (131)
140 2lni_A Stress-induced-phosphop 98.9 8.5E-08 2.9E-12 67.0 13.9 118 41-161 13-130 (133)
141 2fbn_A 70 kDa peptidylprolyl i 98.9 7.2E-09 2.5E-13 78.5 8.7 152 16-169 10-176 (198)
142 2uy1_A Cleavage stimulation fa 98.9 9.6E-06 3.3E-10 70.2 29.0 291 8-318 45-412 (493)
143 3gw4_A Uncharacterized protein 98.9 5.8E-08 2E-12 73.6 13.1 119 56-175 4-133 (203)
144 3upv_A Heat shock protein STI1 98.9 1.3E-07 4.3E-12 65.7 13.8 97 10-107 4-100 (126)
145 2e2e_A Formate-dependent nitri 98.8 4.3E-08 1.5E-12 72.7 11.8 122 55-179 21-145 (177)
146 1p5q_A FKBP52, FK506-binding p 98.8 1.1E-07 3.8E-12 78.3 15.3 130 10-141 147-292 (336)
147 2vgx_A Chaperone SYCD; alterna 98.8 2.7E-08 9.4E-13 71.3 10.3 107 34-142 11-117 (148)
148 4f3v_A ESX-1 secretion system 98.8 6.9E-07 2.4E-11 70.3 18.9 187 56-248 18-237 (282)
149 2vgx_A Chaperone SYCD; alterna 98.8 7.4E-08 2.5E-12 69.0 12.0 99 9-108 20-118 (148)
150 1elw_A TPR1-domain of HOP; HOP 98.8 3.2E-07 1.1E-11 62.4 14.9 98 10-108 4-101 (118)
151 2xcb_A PCRH, regulatory protei 98.8 7E-08 2.4E-12 68.7 11.5 92 15-107 23-114 (142)
152 4f3v_A ESX-1 secretion system 98.8 2E-07 6.7E-12 73.4 14.8 198 22-224 18-246 (282)
153 3dss_A Geranylgeranyl transfer 98.8 1.1E-05 3.6E-10 65.4 25.2 230 62-300 48-319 (331)
154 3dss_A Geranylgeranyl transfer 98.8 2.1E-05 7.2E-10 63.7 26.5 226 91-322 41-307 (331)
155 4gcn_A Protein STI-1; structur 98.8 1.5E-07 5.3E-12 65.4 12.5 95 13-107 11-111 (127)
156 2kck_A TPR repeat; tetratricop 98.8 1.4E-07 4.7E-12 63.7 11.9 98 44-143 6-106 (112)
157 2xcb_A PCRH, regulatory protei 98.8 8.7E-08 3E-12 68.1 10.8 108 34-143 8-115 (142)
158 3q49_B STIP1 homology and U bo 98.8 3.4E-07 1.2E-11 64.4 13.6 97 9-106 8-104 (137)
159 3sz7_A HSC70 cochaperone (SGT) 98.8 3E-07 1E-11 67.1 13.6 100 8-108 9-108 (164)
160 1elw_A TPR1-domain of HOP; HOP 98.7 1.1E-06 3.6E-11 59.8 15.4 98 44-143 4-101 (118)
161 1elr_A TPR2A-domain of HOP; HO 98.7 1.2E-07 4.1E-12 66.0 10.6 98 11-108 5-108 (131)
162 1hxi_A PEX5, peroxisome target 98.7 2E-07 6.8E-12 64.2 11.2 96 12-108 19-114 (121)
163 2fbn_A 70 kDa peptidylprolyl i 98.7 3.4E-07 1.2E-11 69.2 13.4 130 11-142 39-185 (198)
164 2kck_A TPR repeat; tetratricop 98.7 5.7E-07 1.9E-11 60.6 12.7 100 9-109 5-107 (112)
165 3upv_A Heat shock protein STI1 98.7 8.2E-07 2.8E-11 61.5 13.7 97 44-142 4-100 (126)
166 2dba_A Smooth muscle cell asso 98.7 1.2E-06 4.2E-11 62.3 14.6 99 42-143 26-128 (148)
167 4gcn_A Protein STI-1; structur 98.7 7.4E-07 2.5E-11 61.9 12.9 97 45-142 9-111 (127)
168 3q49_B STIP1 homology and U bo 98.6 9.2E-07 3.2E-11 62.2 13.0 100 41-142 6-105 (137)
169 1elr_A TPR2A-domain of HOP; HO 98.6 4.3E-07 1.5E-11 63.1 11.0 99 44-143 4-108 (131)
170 2xev_A YBGF; tetratricopeptide 98.6 2.1E-06 7E-11 59.6 14.4 95 13-108 5-105 (129)
171 2dba_A Smooth muscle cell asso 98.6 3.5E-06 1.2E-10 59.9 15.8 96 11-107 29-127 (148)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 9E-08 3.1E-12 82.3 8.1 143 25-169 249-405 (457)
173 3sz7_A HSC70 cochaperone (SGT) 98.6 7.8E-07 2.7E-11 64.9 12.1 99 184-285 11-109 (164)
174 4b4t_Q 26S proteasome regulato 98.6 8.1E-06 2.8E-10 69.6 18.8 196 17-212 11-244 (434)
175 4b4t_Q 26S proteasome regulato 98.5 1.6E-05 5.4E-10 67.8 20.0 199 50-248 10-245 (434)
176 1hxi_A PEX5, peroxisome target 98.5 8.6E-07 2.9E-11 61.0 9.8 97 222-322 20-117 (121)
177 1wao_1 Serine/threonine protei 98.5 6.7E-07 2.3E-11 77.2 10.9 124 13-138 9-134 (477)
178 3rkv_A Putative peptidylprolyl 98.5 2.5E-06 8.6E-11 62.0 12.4 98 10-108 11-126 (162)
179 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 2.7E-06 9.3E-11 73.1 14.4 130 10-141 268-413 (457)
180 2xev_A YBGF; tetratricopeptide 98.5 2.7E-06 9.2E-11 59.0 11.6 96 224-323 7-109 (129)
181 3ro3_A PINS homolog, G-protein 98.5 2.1E-06 7.1E-11 62.0 11.0 94 12-105 11-115 (164)
182 1ihg_A Cyclophilin 40; ppiase 98.5 3.1E-06 1.1E-10 70.5 13.2 90 78-169 272-361 (370)
183 3rkv_A Putative peptidylprolyl 98.4 3.7E-06 1.3E-10 61.1 12.0 105 221-327 13-134 (162)
184 3k9i_A BH0479 protein; putativ 98.4 7.1E-07 2.4E-11 61.0 7.5 85 23-108 3-90 (117)
185 1wao_1 Serine/threonine protei 98.4 2.8E-07 9.6E-12 79.6 6.6 125 46-173 8-134 (477)
186 3ro3_A PINS homolog, G-protein 98.4 2E-06 6.7E-11 62.2 10.2 134 44-177 9-157 (164)
187 1dce_A Protein (RAB geranylger 98.4 6.7E-05 2.3E-09 66.1 20.5 173 24-200 43-242 (567)
188 2hr2_A Hypothetical protein; a 98.3 1E-05 3.5E-10 57.6 11.6 94 13-107 14-130 (159)
189 1ihg_A Cyclophilin 40; ppiase 98.3 1.2E-05 4.1E-10 66.9 13.8 98 80-178 224-336 (370)
190 3k9i_A BH0479 protein; putativ 98.3 1.1E-06 3.8E-11 60.0 5.9 85 198-284 4-90 (117)
191 1dce_A Protein (RAB geranylger 98.3 0.00012 4.1E-09 64.5 20.0 173 131-308 46-244 (567)
192 2if4_A ATFKBP42; FKBP-like, al 98.3 3.8E-06 1.3E-10 69.1 10.0 96 81-178 232-328 (338)
193 2if4_A ATFKBP42; FKBP-like, al 98.3 4.7E-06 1.6E-10 68.6 10.0 154 149-324 179-333 (338)
194 1klx_A Cysteine rich protein B 98.2 7.3E-05 2.5E-09 52.5 14.3 110 25-144 10-127 (138)
195 2l6j_A TPR repeat-containing p 98.2 1E-05 3.4E-10 54.3 8.6 64 10-73 4-67 (111)
196 3n71_A Histone lysine methyltr 98.2 1.1E-05 3.7E-10 69.5 10.6 86 21-106 320-420 (490)
197 2kat_A Uncharacterized protein 98.2 1.4E-05 4.9E-10 54.1 9.1 79 28-107 3-81 (115)
198 1na3_A Designed protein CTPR2; 98.2 2.9E-05 9.8E-10 49.8 10.2 62 12-73 11-72 (91)
199 1zu2_A Mitochondrial import re 98.2 8.1E-06 2.8E-10 58.0 7.7 99 21-122 13-132 (158)
200 2hr2_A Hypothetical protein; a 98.2 5.8E-05 2E-09 53.7 12.1 94 83-177 15-130 (159)
201 1klx_A Cysteine rich protein B 98.1 0.00016 5.5E-09 50.7 14.0 109 59-178 10-126 (138)
202 2l6j_A TPR repeat-containing p 98.1 4.9E-06 1.7E-10 55.8 6.0 92 43-137 3-101 (111)
203 3n71_A Histone lysine methyltr 98.1 3.2E-05 1.1E-09 66.6 12.1 86 55-140 320-419 (490)
204 1na3_A Designed protein CTPR2; 98.0 0.00012 4.2E-09 46.7 10.5 80 44-125 9-88 (91)
205 2kat_A Uncharacterized protein 97.9 0.00011 3.9E-09 49.5 9.4 61 115-176 20-80 (115)
206 1zu2_A Mitochondrial import re 97.9 7.9E-05 2.7E-09 52.9 8.3 29 167-196 64-92 (158)
207 3ma5_A Tetratricopeptide repea 97.9 0.00013 4.6E-09 47.8 9.0 65 41-106 4-68 (100)
208 3ma5_A Tetratricopeptide repea 97.8 0.00014 4.7E-09 47.7 8.3 67 7-73 4-70 (100)
209 3ly7_A Transcriptional activat 97.7 0.0018 6.1E-08 52.9 14.7 149 35-188 185-347 (372)
210 3ly7_A Transcriptional activat 97.7 0.0023 7.9E-08 52.2 15.2 143 75-223 190-347 (372)
211 3qww_A SET and MYND domain-con 97.4 0.00044 1.5E-08 58.6 8.2 60 81-140 342-408 (433)
212 3qwp_A SET and MYND domain-con 97.4 0.00091 3.1E-08 56.7 9.3 89 53-141 296-398 (429)
213 2kc7_A BFR218_protein; tetratr 97.3 0.0023 7.9E-08 41.4 9.4 60 16-75 6-66 (99)
214 3u64_A Protein TP_0956; tetrat 97.3 0.011 3.7E-07 46.4 13.5 85 130-216 179-272 (301)
215 2kc7_A BFR218_protein; tetratr 97.3 0.00094 3.2E-08 43.4 6.7 54 228-284 9-64 (99)
216 3bee_A Putative YFRE protein; 97.2 0.0031 1.1E-07 40.5 8.6 67 41-108 3-72 (93)
217 3qww_A SET and MYND domain-con 97.2 0.0014 4.7E-08 55.6 8.3 85 93-177 312-410 (433)
218 3bee_A Putative YFRE protein; 97.2 0.0053 1.8E-07 39.4 9.4 66 8-73 4-72 (93)
219 2v5f_A Prolyl 4-hydroxylase su 97.2 0.0058 2E-07 40.1 9.8 66 8-73 3-75 (104)
220 1pc2_A Mitochondria fission pr 97.1 0.0054 1.9E-07 43.0 9.5 83 25-108 13-100 (152)
221 3qwp_A SET and MYND domain-con 97.1 0.0038 1.3E-07 52.9 10.2 92 86-177 294-399 (429)
222 3mkq_B Coatomer subunit alpha; 97.1 0.03 1E-06 40.3 13.2 99 54-173 15-113 (177)
223 3mkq_A Coatomer beta'-subunit; 97.1 0.0085 2.9E-07 55.4 13.4 28 218-245 680-707 (814)
224 3mkq_A Coatomer beta'-subunit; 97.1 0.018 6E-07 53.3 15.4 185 18-239 607-803 (814)
225 1pc2_A Mitochondria fission pr 97.1 0.0096 3.3E-07 41.8 10.3 50 271-321 51-102 (152)
226 2v5f_A Prolyl 4-hydroxylase su 96.9 0.015 5E-07 38.2 9.7 58 269-326 19-82 (104)
227 3mkq_B Coatomer subunit alpha; 96.6 0.12 4.1E-06 37.3 13.9 130 17-175 12-141 (177)
228 4h7y_A Dual specificity protei 96.6 0.099 3.4E-06 36.3 11.9 102 78-181 12-126 (161)
229 4h7y_A Dual specificity protei 96.6 0.035 1.2E-06 38.5 9.7 53 198-251 74-126 (161)
230 1nzn_A CGI-135 protein, fissio 96.4 0.028 9.5E-07 37.9 8.6 85 24-108 15-103 (126)
231 3u64_A Protein TP_0956; tetrat 96.4 0.049 1.7E-06 42.8 10.7 86 26-111 179-272 (301)
232 1nzn_A CGI-135 protein, fissio 96.2 0.076 2.6E-06 35.8 9.7 90 233-325 15-109 (126)
233 1wy6_A Hypothetical protein ST 96.2 0.16 5.4E-06 34.6 13.3 140 160-322 18-157 (172)
234 1wy6_A Hypothetical protein ST 95.4 0.39 1.3E-05 32.8 16.0 63 152-215 94-156 (172)
235 2ff4_A Probable regulatory pro 95.1 0.14 4.6E-06 42.8 9.4 74 45-119 172-250 (388)
236 4gns_B Protein CSD3, chitin bi 95.1 0.31 1.1E-05 44.2 12.1 127 14-141 252-398 (754)
237 3lvg_A Clathrin heavy chain 1; 95.1 3.7E-06 1.3E-10 70.0 -17.5 237 44-309 54-323 (624)
238 1v54_E Cytochrome C oxidase po 95.0 0.35 1.2E-05 30.9 8.7 65 255-319 9-74 (109)
239 4ady_A RPN2, 26S proteasome re 94.9 2.5 8.6E-05 39.4 18.5 258 53-318 383-657 (963)
240 4gns_B Protein CSD3, chitin bi 94.8 0.25 8.5E-06 44.8 10.7 128 187-317 251-398 (754)
241 4fhn_B Nucleoporin NUP120; pro 94.7 1.7 6E-05 41.9 16.9 51 16-70 818-868 (1139)
242 4b4t_P 26S proteasome regulato 94.5 2 6.8E-05 36.5 18.7 96 152-247 140-246 (445)
243 4ady_A RPN2, 26S proteasome re 94.2 3.6 0.00012 38.4 22.0 267 20-297 384-668 (963)
244 2ff4_A Probable regulatory pro 94.1 0.31 1.1E-05 40.6 9.4 74 81-155 173-251 (388)
245 4fhn_B Nucleoporin NUP120; pro 94.1 2.6 9.1E-05 40.7 16.8 193 119-318 817-1049(1139)
246 1v54_E Cytochrome C oxidase po 93.9 0.73 2.5E-05 29.4 9.3 63 199-262 25-87 (109)
247 3o48_A Mitochondria fission 1 93.7 0.61 2.1E-05 31.7 8.3 68 41-108 37-107 (134)
248 2y69_E Cytochrome C oxidase su 93.3 1 3.6E-05 30.5 8.7 64 256-319 53-117 (152)
249 3lvg_A Clathrin heavy chain 1; 93.2 0.0021 7.1E-08 54.1 -5.1 216 9-239 82-324 (624)
250 2y69_E Cytochrome C oxidase su 92.6 1.6 5.6E-05 29.6 9.3 62 200-262 69-130 (152)
251 3o48_A Mitochondria fission 1 92.4 1.7 5.9E-05 29.5 9.4 55 271-325 59-113 (134)
252 3ffl_A Anaphase-promoting comp 91.6 2.4 8.4E-05 30.0 9.4 126 4-142 12-150 (167)
253 3ffl_A Anaphase-promoting comp 89.6 4.1 0.00014 28.9 9.1 124 187-323 23-155 (167)
254 1y8m_A FIS1; mitochondria, unk 89.6 3.7 0.00013 28.3 11.0 68 41-108 36-106 (144)
255 4b4t_R RPN7, 26S proteasome re 89.6 5.9 0.0002 33.4 12.0 62 45-106 132-195 (429)
256 1zbp_A Hypothetical protein VP 89.4 1.5 5.1E-05 34.0 7.2 56 18-73 5-60 (273)
257 1y8m_A FIS1; mitochondria, unk 89.3 4 0.00014 28.1 11.3 55 270-324 57-111 (144)
258 4b4t_P 26S proteasome regulato 89.0 9.7 0.00033 32.3 19.8 259 23-282 29-322 (445)
259 4b4t_R RPN7, 26S proteasome re 88.8 4.3 0.00015 34.3 10.6 96 12-107 133-236 (429)
260 2uwj_G Type III export protein 87.8 3.6 0.00012 26.2 6.8 79 24-109 20-98 (115)
261 2p58_C Putative type III secre 87.7 3.9 0.00013 26.1 7.7 79 24-109 21-99 (116)
262 3txn_A 26S proteasome regulato 86.6 13 0.00044 30.9 22.9 239 12-255 21-290 (394)
263 3esl_A Checkpoint serine/threo 85.6 8.5 0.00029 28.3 9.0 53 200-252 95-148 (202)
264 3esl_A Checkpoint serine/threo 84.0 11 0.00037 27.8 10.3 54 235-288 95-148 (202)
265 1zbp_A Hypothetical protein VP 82.4 8.2 0.00028 29.9 8.2 54 229-284 7-60 (273)
266 1wdy_A 2-5A-dependent ribonucl 78.0 6.7 0.00023 30.4 7.0 21 15-35 7-27 (285)
267 1qsa_A Protein (soluble lytic 76.6 41 0.0014 30.0 23.4 151 164-319 229-410 (618)
268 2wpv_A GET4, UPF0363 protein Y 75.2 30 0.001 27.6 19.6 167 46-246 35-215 (312)
269 3lpz_A GET4 (YOR164C homolog); 75.1 31 0.0011 27.8 20.8 168 46-247 37-215 (336)
270 2wvi_A Mitotic checkpoint seri 75.0 11 0.00037 26.8 6.4 53 274-326 79-132 (164)
271 1wdy_A 2-5A-dependent ribonucl 73.7 5.6 0.00019 30.8 5.4 56 49-112 7-65 (285)
272 2d2s_A Exocyst complex compone 73.3 28 0.00096 26.4 9.7 87 16-105 24-117 (235)
273 3bu8_A Telomeric repeat-bindin 73.0 25 0.00087 26.1 7.9 22 86-107 121-142 (235)
274 2wvi_A Mitotic checkpoint seri 72.9 22 0.00077 25.2 8.5 51 203-253 79-130 (164)
275 4a1g_A Mitotic checkpoint seri 72.1 22 0.00076 24.8 10.6 76 251-330 65-141 (152)
276 2uwj_G Type III export protein 71.2 17 0.00059 23.2 7.6 21 301-321 79-99 (115)
277 2p58_C Putative type III secre 70.5 18 0.00062 23.1 8.3 51 228-285 49-99 (116)
278 4aez_C MAD3, mitotic spindle c 69.9 18 0.00063 27.1 6.9 57 273-329 132-189 (223)
279 1k1a_A B-cell lymphoma 3-encod 68.4 33 0.0011 25.5 8.7 19 55-73 17-35 (241)
280 3lpz_A GET4 (YOR164C homolog); 68.1 46 0.0016 26.9 20.9 142 51-211 62-214 (336)
281 2wpv_A GET4, UPF0363 protein Y 62.3 58 0.002 26.0 18.8 175 18-211 21-215 (312)
282 1qsa_A Protein (soluble lytic 60.5 93 0.0032 27.7 29.1 117 198-319 228-348 (618)
283 4b4t_S RPN3, 26S proteasome re 60.5 84 0.0029 27.2 12.6 64 45-108 232-299 (523)
284 4a1g_A Mitotic checkpoint seri 59.4 42 0.0014 23.4 9.8 50 203-252 84-134 (152)
285 3eiq_C Programmed cell death p 58.4 75 0.0026 26.0 14.5 76 222-298 220-296 (358)
286 3kae_A CDC27, possible protein 58.2 49 0.0017 23.8 7.2 25 297-321 215-239 (242)
287 2rfa_A Transient receptor pote 57.9 36 0.0012 25.2 7.1 52 17-69 7-59 (232)
288 2ion_A PDCD4, programmed cell 57.8 45 0.0015 23.2 8.6 63 14-76 13-77 (152)
289 3txn_A 26S proteasome regulato 57.5 82 0.0028 26.2 22.4 233 45-282 20-282 (394)
290 4b4t_S RPN3, 26S proteasome re 55.4 1E+02 0.0035 26.7 11.8 64 10-73 231-299 (523)
291 2nsz_A Programmed cell death p 55.4 44 0.0015 22.4 7.6 22 224-245 12-33 (129)
292 4aez_C MAD3, mitotic spindle c 54.8 23 0.00079 26.6 5.0 52 201-252 131-183 (223)
293 3jxi_A Vanilloid receptor-rela 53.6 5.5 0.00019 30.6 1.7 22 298-319 230-251 (260)
294 3jxi_A Vanilloid receptor-rela 53.3 6.1 0.00021 30.3 2.0 14 57-70 15-28 (260)
295 3hra_A Ankyrin repeat family p 52.5 16 0.00055 26.4 4.1 15 21-35 13-27 (201)
296 3eiq_C Programmed cell death p 52.4 95 0.0033 25.4 15.2 25 14-38 58-82 (358)
297 3bqo_A Telomeric repeat-bindin 52.1 17 0.00057 26.6 3.7 24 85-108 123-146 (211)
298 3hra_A Ankyrin repeat family p 52.0 36 0.0012 24.5 6.0 14 55-68 13-26 (201)
299 2xig_A Ferric uptake regulatio 51.5 57 0.002 22.5 7.4 36 198-233 40-75 (150)
300 3kea_A K1L; tropism, ANK repea 50.7 47 0.0016 25.8 6.8 183 51-256 35-225 (285)
301 2ion_A PDCD4, programmed cell 49.8 63 0.0021 22.5 7.6 23 188-210 13-35 (152)
302 4gq2_M Nucleoporin NUP120; bet 49.5 1.8E+02 0.0061 27.6 12.7 47 116-162 899-949 (950)
303 4ets_A Ferric uptake regulatio 49.4 56 0.0019 23.0 6.3 57 177-234 26-84 (162)
304 2nsz_A Programmed cell death p 49.0 58 0.002 21.9 10.0 63 14-76 11-75 (129)
305 1bpo_A Protein (clathrin); cla 48.9 1.3E+02 0.0043 25.7 11.9 141 23-175 342-482 (494)
306 3ltm_A Alpha-REP4; protein eng 48.8 74 0.0025 23.1 17.1 29 217-246 155-183 (211)
307 1mzb_A Ferric uptake regulatio 48.1 61 0.0021 21.9 6.6 35 199-233 33-67 (136)
308 1k1a_A B-cell lymphoma 3-encod 48.0 81 0.0028 23.3 7.7 86 85-174 12-101 (241)
309 3t8k_A Uncharacterized protein 47.9 74 0.0025 22.8 8.4 28 51-78 42-69 (186)
310 3eu9_A Huntingtin-interacting 47.8 36 0.0012 25.2 5.6 18 299-316 216-233 (240)
311 2w57_A Ferric uptake regulatio 47.6 67 0.0023 22.2 6.9 59 175-234 8-67 (150)
312 2fe3_A Peroxide operon regulat 46.3 68 0.0023 22.0 7.3 35 199-233 36-70 (145)
313 3eyy_A Putative iron uptake re 46.3 54 0.0018 22.5 5.7 33 201-233 34-66 (145)
314 3aji_A 26S proteasome non-ATPa 45.8 44 0.0015 24.7 5.7 20 17-36 10-29 (231)
315 2xig_A Ferric uptake regulatio 45.4 73 0.0025 22.0 7.3 44 85-128 32-75 (150)
316 2zu6_B Programmed cell death p 45.1 1.2E+02 0.0039 24.2 13.2 79 222-301 169-248 (307)
317 3eyy_A Putative iron uptake re 45.1 72 0.0025 21.9 6.8 56 209-266 9-64 (145)
318 2b7e_A PRE-mRNA processing pro 45.1 17 0.00059 20.5 2.4 29 166-194 3-31 (59)
319 1ug3_A EIF4GI, eukaryotic prot 44.2 1.2E+02 0.0043 24.4 14.1 63 13-76 14-78 (339)
320 3t8k_A Uncharacterized protein 44.1 85 0.0029 22.4 8.4 30 85-114 41-70 (186)
321 1mzb_A Ferric uptake regulatio 42.7 75 0.0026 21.4 6.3 58 70-128 9-67 (136)
322 3mwm_A ZUR, putative metal upt 41.1 48 0.0017 22.5 4.8 44 50-93 19-62 (139)
323 2fe3_A Peroxide operon regulat 41.0 84 0.0029 21.5 7.8 55 210-265 13-67 (145)
324 3kea_A K1L; tropism, ANK repea 40.9 73 0.0025 24.7 6.5 145 86-247 35-186 (285)
325 1bpo_A Protein (clathrin); cla 40.6 1.7E+02 0.0059 25.0 9.9 71 73-144 355-425 (494)
326 2f6m_A Suppressor protein STP2 40.4 53 0.0018 19.0 4.5 43 258-302 6-48 (65)
327 2w57_A Ferric uptake regulatio 40.0 80 0.0027 21.8 5.8 35 94-128 32-66 (150)
328 2o03_A Probable zinc uptake re 39.4 53 0.0018 22.0 4.7 36 57-92 23-58 (131)
329 3eu9_A Huntingtin-interacting 39.2 53 0.0018 24.2 5.3 15 20-34 16-30 (240)
330 4ets_A Ferric uptake regulatio 39.1 99 0.0034 21.7 6.7 44 85-128 38-83 (162)
331 2qx5_A Nucleoporin NIC96; mRNA 38.8 2.2E+02 0.0075 25.7 16.3 41 15-55 157-197 (661)
332 3mwm_A ZUR, putative metal upt 38.7 55 0.0019 22.2 4.7 42 192-233 21-62 (139)
333 4g8k_A 2-5A-dependent ribonucl 38.5 78 0.0027 25.1 6.5 104 100-218 220-328 (337)
334 2ijq_A Hypothetical protein; s 38.2 1E+02 0.0035 21.7 8.4 50 58-107 46-103 (161)
335 3pvs_A Replication-associated 38.1 1.8E+02 0.0063 24.5 13.7 54 162-215 268-326 (447)
336 1ya0_A SMG-7 transcript varian 37.9 2E+02 0.0067 24.8 10.0 68 23-91 165-232 (497)
337 2ijq_A Hypothetical protein; s 37.2 1.1E+02 0.0037 21.6 8.3 52 196-247 44-103 (161)
338 3kae_A CDC27, possible protein 37.0 1.2E+02 0.004 21.9 11.5 114 89-213 12-143 (242)
339 3ltj_A Alpharep-4; protein eng 36.0 1.2E+02 0.004 21.7 18.5 17 218-234 151-167 (201)
340 3ltj_A Alpharep-4; protein eng 35.9 1.2E+02 0.004 21.7 19.4 172 42-233 26-197 (201)
341 3bqo_A Telomeric repeat-bindin 35.5 60 0.0021 23.8 4.5 48 26-73 94-146 (211)
342 3t5v_B Nuclear mRNA export pro 34.6 1.1E+02 0.0039 25.9 6.8 59 187-245 179-246 (455)
343 2o03_A Probable zinc uptake re 34.3 62 0.0021 21.7 4.4 11 202-212 28-38 (131)
344 3twr_A Tankyrase-2; ankyrin re 33.3 59 0.002 22.3 4.4 15 20-34 15-29 (165)
345 3ljn_A Hypothetical protein; a 31.8 1.2E+02 0.0042 24.3 6.7 18 18-35 25-42 (364)
346 1zl8_A LIN-7; heterodimer, alp 31.2 66 0.0022 17.3 3.2 22 305-326 8-29 (53)
347 3qil_A Clathrin heavy chain 1; 30.9 79 0.0027 21.0 4.1 51 47-100 35-85 (125)
348 4fke_A Aminopeptidase N; zinc 30.7 3.5E+02 0.012 25.5 17.0 90 49-143 691-787 (909)
349 3qil_A Clathrin heavy chain 1; 30.6 75 0.0025 21.1 3.9 48 155-205 38-85 (125)
350 1g1e_B SIN3A; four-helix bundl 30.6 98 0.0034 19.2 4.7 30 26-55 10-39 (89)
351 3ljn_A Hypothetical protein; a 30.5 1.2E+02 0.0043 24.3 6.5 17 299-315 250-266 (364)
352 3ygs_P Procaspase 9; apoptosis 30.5 86 0.0029 19.7 4.3 35 94-132 52-86 (97)
353 2fu4_A Ferric uptake regulatio 30.3 89 0.003 18.6 7.3 34 200-233 33-66 (83)
354 2yru_A Steroid receptor RNA ac 30.3 96 0.0033 20.5 4.6 42 66-107 48-89 (118)
355 3b7b_A Euchromatic histone-lys 29.9 53 0.0018 24.3 3.9 17 267-283 219-235 (237)
356 3ctd_A Putative ATPase, AAA fa 29.8 1.7E+02 0.0058 21.7 9.2 20 57-76 48-67 (213)
357 4gq2_M Nucleoporin NUP120; bet 29.7 3.7E+02 0.013 25.5 11.4 49 185-233 898-950 (950)
358 2qx5_A Nucleoporin NIC96; mRNA 28.7 3.3E+02 0.011 24.6 11.7 17 301-317 549-565 (661)
359 2d2s_A Exocyst complex compone 28.5 1.9E+02 0.0066 21.8 16.0 20 121-140 25-44 (235)
360 2r9g_A AAA ATPase, central reg 28.5 1.8E+02 0.0061 21.4 10.2 95 82-177 14-116 (204)
361 3ltm_A Alpha-REP4; protein eng 28.2 1.7E+02 0.0057 21.1 19.4 173 41-233 30-202 (211)
362 2p22_A Suppressor protein STP2 28.1 84 0.0029 22.5 4.2 44 221-265 113-156 (174)
363 1oai_A Nuclear RNA export fact 27.9 78 0.0027 17.8 3.3 21 268-288 33-54 (59)
364 2rg8_A Programmed cell death p 27.3 1.6E+02 0.0055 20.7 5.7 25 187-211 13-37 (165)
365 2rfa_A Transient receptor pote 26.9 1.8E+02 0.0063 21.1 7.3 21 16-36 40-60 (232)
366 1wgl_A TOLL-interacting protei 26.7 84 0.0029 17.7 3.3 14 233-246 37-50 (59)
367 1ug3_A EIF4GI, eukaryotic prot 26.0 2E+02 0.0068 23.2 6.7 25 82-106 14-38 (339)
368 1q2z_A ATP-dependent DNA helic 25.9 72 0.0025 21.1 3.4 31 199-229 42-73 (120)
369 4fke_A Aminopeptidase N; zinc 25.8 4.3E+02 0.015 25.0 17.8 13 9-21 571-583 (909)
370 4g8k_A 2-5A-dependent ribonucl 25.1 2.3E+02 0.0079 22.3 7.1 21 15-35 27-47 (337)
371 2etb_A Transient receptor pote 25.0 1.3E+02 0.0044 22.5 5.4 22 89-110 9-30 (256)
372 3bge_A Predicted ATPase; struc 24.8 2.1E+02 0.0071 21.0 9.8 34 91-124 19-52 (201)
373 2jp7_A MRNA export factor MEX6 24.6 32 0.0011 19.2 1.3 21 25-45 34-54 (57)
374 3d5l_A Regulatory protein RECX 24.2 2.2E+02 0.0077 21.2 10.7 15 97-111 94-108 (221)
375 1wty_A Hypothetical protein TT 23.5 1.6E+02 0.0055 19.2 5.2 12 200-211 4-15 (119)
376 3bu8_A Telomeric repeat-bindin 22.9 2.4E+02 0.0083 21.1 13.0 20 59-78 34-53 (235)
377 2cwy_A Hypothetical protein TT 22.5 1.5E+02 0.0051 18.5 4.9 16 163-178 15-30 (94)
378 2dzn_A Probable 26S proteasome 21.9 41 0.0014 24.7 1.9 19 18-36 7-25 (228)
379 1rw2_A ATP-dependent DNA helic 21.8 1.3E+02 0.0046 20.9 4.2 31 199-229 73-104 (152)
380 2czy_A Paired amphipathic heli 21.7 1.4E+02 0.0047 17.8 4.2 29 26-54 4-32 (77)
381 1bd8_A P19INK4D CDK4/6 inhibit 21.7 1.1E+02 0.0039 20.5 4.1 19 17-35 6-24 (156)
382 3lxu_X Tripeptidyl-peptidase 2 21.4 4.4E+02 0.015 26.3 8.8 78 14-93 1238-1331(1354)
383 2crb_A Nuclear receptor bindin 20.8 1.7E+02 0.0056 18.4 4.0 24 292-315 17-40 (97)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.9e-34 Score=247.83 Aligned_cols=185 Identities=17% Similarity=0.278 Sum_probs=95.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHhCCCCCCHhh
Q 018782 46 TYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGN---------IDEAHGMLREMRSIGAEPDAFS 116 (350)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 116 (350)
.++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+. ++.|.++|++|.+.|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3555555566666666666666666555555666666666655554433 3444455555555455555555
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 018782 117 YSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD 196 (350)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 196 (350)
|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 55555555555555555555555544444455555555555555555555555555555444445555555555555555
Q ss_pred ccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 018782 197 RAEVNMALRLITRMTKENVMPDRHTYNMVLKLLV 230 (350)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 230 (350)
.|++++|.+++++|.+.+..|+..||+.++..|+
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 5555555555555544444444444444444444
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.3e-33 Score=243.83 Aligned_cols=197 Identities=17% Similarity=0.257 Sum_probs=175.2
Q ss_pred CCCCCCcCHh-hHHHHHHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCC---------HHHHHHHHHHH
Q 018782 2 VEFGIKPSIY-DLDQLLHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGE---------LSEARKLFDEM 70 (350)
Q Consensus 2 ~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~ 70 (350)
.+.++.+++. .++.+|++|++.|++++|.++|++|.. +.+|+..+|+.||.+|++.+. ++.|.++|++|
T Consensus 17 ~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M 96 (501)
T 4g26_A 17 KKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM 96 (501)
T ss_dssp -------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH
T ss_pred HHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHH
Confidence 4566666655 478889999999999999999999977 899999999999999987664 68899999999
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHH
Q 018782 71 LERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVF 150 (350)
Q Consensus 71 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 150 (350)
.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 97 ~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ 176 (501)
T 4g26_A 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP 176 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 018782 151 TYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRA 198 (350)
Q Consensus 151 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 198 (350)
+|++||.+|++.|+.++|.+++++|.+.+..|+..||+.++..++..+
T Consensus 177 ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~ 224 (501)
T 4g26_A 177 ELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEV 224 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999887643
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-30 Score=231.82 Aligned_cols=310 Identities=10% Similarity=-0.002 Sum_probs=176.4
Q ss_pred CCCCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHH---------------------------------
Q 018782 4 FGIKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSIL--------------------------------- 50 (350)
Q Consensus 4 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l--------------------------------- 50 (350)
.|.+++..+|+.++..|.+.|++++|.++|+++....|.+...+..+
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 194 GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 35667788999999999999999999999999866444444443333
Q ss_pred -----HHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 018782 51 -----VRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFC 125 (350)
Q Consensus 51 -----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (350)
+..|.+.|++++|.++|+++.+. +++..+++.++.++.+.|++++|.++|+++.+.+ +.+..++..++.++.
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLH 350 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHH
Confidence 33344556666666666666554 3566666666666666666666666666666543 224445555555555
Q ss_pred hcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHH
Q 018782 126 EANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALR 205 (350)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 205 (350)
+.|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+++.+.... +..+|..++..+.+.|++++|.+
T Consensus 351 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555555555555554432 334555555555555555555555555555544222 44455555555555555555555
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC-
Q 018782 206 LITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE- 284 (350)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~- 284 (350)
+|+++.+.+. .+..+|..++.+|.+.|++++|.++|+++.+.. ..+..+|..+...+... |++++|.++|+++.+.
T Consensus 429 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 429 AYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNK-SDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhh
Confidence 5555554432 344555555555555555555555555555432 12444555555554443 5555555555555443
Q ss_pred ---CCCCC--HHHHHHHHHHHHcCCChhHHHHHHHHhhccCC
Q 018782 285 ---GIPPY--SSTVEMLRNRLVGLGFLDIIEILADKMERSTS 321 (350)
Q Consensus 285 ---~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 321 (350)
+..|+ ..+|..++.+|.+.|++++|.++++++.+.++
T Consensus 506 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 33343 44555555555555555555555555554443
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-30 Score=230.56 Aligned_cols=333 Identities=10% Similarity=0.009 Sum_probs=255.8
Q ss_pred CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc-------------
Q 018782 7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER------------- 73 (350)
Q Consensus 7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------------- 73 (350)
.|+..++..++.+|...|++++|..+|+.+.. .++++.+++.++.+|.+.|++++|.++|+++...
T Consensus 114 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 192 (597)
T 2xpi_A 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL-YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQ 192 (597)
T ss_dssp HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG-GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CC
T ss_pred CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccc
Confidence 35555666666666666666666666665533 2455566666666666666666666666532211
Q ss_pred --CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------------------------------------
Q 018782 74 --KCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGA----------------------------------------- 110 (350)
Q Consensus 74 --~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------------------------- 110 (350)
+.+++..+|+.++.+|.+.|++++|+++|+++.+.+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 272 (597)
T 2xpi_A 193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLR 272 (597)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHH
Confidence 1122355666666666666666666666665543221
Q ss_pred -----------------------------CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc
Q 018782 111 -----------------------------EPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK 161 (350)
Q Consensus 111 -----------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (350)
+++..+++.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+
T Consensus 273 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 273 SLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHE 351 (597)
T ss_dssp HHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHH
Confidence 3678899999999999999999999999998765 4578899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHH
Q 018782 162 NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEV 241 (350)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 241 (350)
.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++
T Consensus 352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999764 3478899999999999999999999999998854 34678999999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc--
Q 018782 242 WESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS-- 319 (350)
Q Consensus 242 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 319 (350)
|+++.+.+ ..+..++..+..++... |++++|.++|+++.+.. +.++.+|..++..|.+.|++++|.++++++.+.
T Consensus 430 ~~~~~~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 430 YTTAARLF-QGTHLPYLFLGMQHMQL-GNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHTT-TTCSHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 99999763 34778899999988876 99999999999999876 678999999999999999999999999999775
Q ss_pred ----CCCcHHHHHHHhcccccccccccchhh
Q 018782 320 ----TSCTIQELANAMRGKTGFRKSRSEETE 346 (350)
Q Consensus 320 ----~~~~~~~~~~~l~~~~~~~~~~~~~~~ 346 (350)
++......+..+...+...+..+++.+
T Consensus 507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 233225566777777766666665544
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5.9e-27 Score=198.50 Aligned_cols=307 Identities=14% Similarity=0.114 Sum_probs=155.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782 13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA 92 (350)
Q Consensus 13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (350)
+..+...+...|++++|...++......|.+..+|..+..++.+.|++++|...|+++.+.. |.+..+|..+..++...
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 114 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAA 114 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHc
Confidence 33344444455555555555555544444555555555555555555555555555554432 12344455555555555
Q ss_pred CCHHHHHHHHHHHHhCCC---------------------------------CCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 018782 93 GNIDEAHGMLREMRSIGA---------------------------------EPDAFSYSIFIHAFCEANDIHSVFRVLDS 139 (350)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~---------------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 139 (350)
|++++|.+.|+++.+..+ +.+..+|..+...+...|++++|...|++
T Consensus 115 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 115 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp SCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555555444321 12233444444444444444444444444
Q ss_pred HhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCh
Q 018782 140 MKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDR 219 (350)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 219 (350)
+.+.+ +.+...+..+...+...|++++|...+++..+..+. +..++..+...+...|++++|...++++.+.++ .+.
T Consensus 195 al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~ 271 (388)
T 1w3b_A 195 AVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFP 271 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCH
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCH
Confidence 44432 223344444444444555555555555544444222 344555555555556666666666666555432 234
Q ss_pred hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 018782 220 HTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNR 299 (350)
Q Consensus 220 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (350)
.+|..+..++.+.|++++|...|+++.+.. +.+...+..+...+... |++++|...++++.+.. |.+..++..+..+
T Consensus 272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 348 (388)
T 1w3b_A 272 DAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQ-GNIEEAVRLYRKALEVF-PEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT-TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 455555566666666666666666655441 23445555555554444 66666666666655543 4455556666666
Q ss_pred HHcCCChhHHHHHHHHhhccCCCcHHH
Q 018782 300 LVGLGFLDIIEILADKMERSTSCTIQE 326 (350)
Q Consensus 300 ~~~~g~~~~a~~~~~~~~~~~~~~~~~ 326 (350)
+.+.|++++|...++++.+..|.....
T Consensus 349 ~~~~g~~~~A~~~~~~a~~~~p~~~~a 375 (388)
T 1w3b_A 349 LQQQGKLQEALMHYKEAIRISPTFADA 375 (388)
T ss_dssp HHTTTCCHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 666666666666666665555544433
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=5e-26 Score=192.80 Aligned_cols=303 Identities=14% Similarity=0.075 Sum_probs=228.0
Q ss_pred HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782 16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI 95 (350)
Q Consensus 16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (350)
+...+.+.|++++|.+.++.+....|.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 34567889999999999999988788889999999999999999999999999998874 55889999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782 96 DEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEM 175 (350)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 175 (350)
++|+..|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|...|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999853 3355678889999999999999988888887754 334556666777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCC--------------------------------C-CChhHH
Q 018782 176 IERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENV--------------------------------M-PDRHTY 222 (350)
Q Consensus 176 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------~-~~~~~~ 222 (350)
.+..+. +..+|..+...+...|++++|...|+++.+.++ . .+..++
T Consensus 162 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 162 IETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 766432 456666666666666766666666666554321 1 234556
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 018782 223 NMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG 302 (350)
Q Consensus 223 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (350)
..+..++...|++++|...|+++.+... .+...+..+...+... |++++|...|+++.+.. |.+..++..+...+.+
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEK-GSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 6667777777777777777777776421 2355666666666655 77777777777777764 6677777777777777
Q ss_pred CCChhHHHHHHHHhhccCCCcHH
Q 018782 303 LGFLDIIEILADKMERSTSCTIQ 325 (350)
Q Consensus 303 ~g~~~~a~~~~~~~~~~~~~~~~ 325 (350)
.|++++|...++++.+..+....
T Consensus 318 ~g~~~~A~~~~~~al~~~p~~~~ 340 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVFPEFAA 340 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHH
T ss_pred cCCHHHHHHHHHHHHhcCCCcHH
Confidence 88888888888777776555443
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=1.5e-25 Score=193.66 Aligned_cols=312 Identities=15% Similarity=0.084 Sum_probs=267.3
Q ss_pred CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782 7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL 86 (350)
Q Consensus 7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 86 (350)
+.++..+..+...+.+.|++++|..+|+.+....|.+..++..+..++...|++++|...|+++.+.+. .+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 345667888899999999999999999999887788999999999999999999999999999998854 3788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH---hhHHHH------------HHHHHhcCCHhHHHHHHHHHhhCCCCccHHH
Q 018782 87 EAMCKAGNIDEAHGMLREMRSIGAEPDA---FSYSIF------------IHAFCEANDIHSVFRVLDSMKRYNLVPNVFT 151 (350)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 151 (350)
.++...|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|...|+++.+.. +.+..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 99999999999999999999864 2233 455544 445889999999999999998765 557889
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHH------
Q 018782 152 YNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMV------ 225 (350)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------ 225 (350)
+..+..+|.+.|++++|...++++.+.... +..++..+...+...|++++|...++.+..... .+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHH
Confidence 999999999999999999999999887533 788999999999999999999999999987542 244444444
Q ss_pred ------HHHHHHcCCHhHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHH
Q 018782 226 ------LKLLVRVGRFDRATEVWESMEKRGFYPS-----VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVE 294 (350)
Q Consensus 226 ------~~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 294 (350)
...+...|++++|...|+++.+. .|+ ...+..+...+... |++++|...++++.+.. +.+..++.
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~-p~~~~~~~ 333 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKD-EKPVEAIRVCSEVLQME-PDNVNALK 333 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 78999999999999999999975 454 34667777777666 99999999999998875 66899999
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhccCCCcHHHH
Q 018782 295 MLRNRLVGLGFLDIIEILADKMERSTSCTIQEL 327 (350)
Q Consensus 295 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 327 (350)
.++.+|...|++++|...++++.+..+......
T Consensus 334 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 366 (450)
T 2y4t_A 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR 366 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHH
Confidence 999999999999999999999998877765543
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=7.5e-23 Score=171.11 Aligned_cols=310 Identities=15% Similarity=0.090 Sum_probs=261.3
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA 88 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (350)
|+..+..+...+...|++++|...|+.+....|.++.++..+..++...|++++|...++++.+.. +.+...+..+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 466788888999999999999999999988788899999999999999999999999999999874 3378899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC--CCHhhHHHH------------HHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHH
Q 018782 89 MCKAGNIDEAHGMLREMRSIGAE--PDAFSYSIF------------IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNC 154 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (350)
+...|++++|...|+++.+.... .+...+..+ ...+...|++++|..+++++.+.. +.+..++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 99999999999999999986320 234444444 578889999999999999998765 457888999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHH-----------
Q 018782 155 IIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYN----------- 223 (350)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------- 223 (350)
+..++...|++++|...++++.+..+. +..++..+...+...|++++|...++...+... .+...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHH
Confidence 999999999999999999999987543 788899999999999999999999999988643 2333333
Q ss_pred -HHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH-----HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 018782 224 -MVLKLLVRVGRFDRATEVWESMEKRGFYPSVS-----TYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLR 297 (350)
Q Consensus 224 -~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-----~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 297 (350)
.+...+...|++++|...++++.+.. |+.. .+..+...+... |++++|...++++.+.. +.+..++..+.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 313 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKD-EKPVEAIRICSEVLQME-PDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 23667899999999999999999763 4422 233355555555 99999999999999875 66899999999
Q ss_pred HHHHcCCChhHHHHHHHHhhccCCCcHHH
Q 018782 298 NRLVGLGFLDIIEILADKMERSTSCTIQE 326 (350)
Q Consensus 298 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 326 (350)
.++...|++++|...++++.+.+|.....
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEHNENDQQI 342 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChHH
Confidence 99999999999999999999988776553
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=1.8e-22 Score=174.22 Aligned_cols=300 Identities=12% Similarity=0.029 Sum_probs=250.8
Q ss_pred CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCH---HHHH
Q 018782 7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDI---LAHN 83 (350)
Q Consensus 7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 83 (350)
+.+..++..+..++...|++++|...|+.+....|.+..++..++.++...|++++|.+.|+++.+.... +. ..+.
T Consensus 57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 135 (450)
T 2y4t_A 57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQS 135 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHH
Confidence 4467888999999999999999999999998877888999999999999999999999999999987432 44 5555
Q ss_pred HH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHH
Q 018782 84 SL------------LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFT 151 (350)
Q Consensus 84 ~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 151 (350)
.+ ...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|..+|+++.+.. +.+..+
T Consensus 136 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 213 (450)
T 2y4t_A 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEA 213 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 55 445889999999999999999864 4577889999999999999999999999998764 457889
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHhcccCHHHHHHHHHHHHhCCCCCC-
Q 018782 152 YNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAI------------LAYHCDRAEVNMALRLITRMTKENVMPD- 218 (350)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~- 218 (350)
+..+..++...|++++|...++++.+.... +...+..+ ...+...|++++|...++.+.+.. |+
T Consensus 214 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~ 290 (450)
T 2y4t_A 214 FYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSI 290 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Ccc
Confidence 999999999999999999999999987433 44555444 788899999999999999998853 44
Q ss_pred ----hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHH
Q 018782 219 ----RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVE 294 (350)
Q Consensus 219 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 294 (350)
...+..+..++.+.|++++|...++++.+.. +.+...+..+..++... |++++|...++++.+.. |.+...+.
T Consensus 291 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~-p~~~~~~~ 367 (450)
T 2y4t_A 291 AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIE-EMYDEAIQDYETAQEHN-ENDQQIRE 367 (450)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTS-SSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhC-cchHHHHH
Confidence 3478889999999999999999999998752 23677888888887766 99999999999999875 55677777
Q ss_pred HHHHH------------HHcCC-----ChhHHHHHHHH
Q 018782 295 MLRNR------------LVGLG-----FLDIIEILADK 315 (350)
Q Consensus 295 ~l~~~------------~~~~g-----~~~~a~~~~~~ 315 (350)
.+..+ |...| +.+++.+.+++
T Consensus 368 ~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 368 GLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 77633 44445 56777888876
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.3e-22 Score=178.04 Aligned_cols=313 Identities=11% Similarity=0.023 Sum_probs=204.0
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-----------
Q 018782 8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCP----------- 76 (350)
Q Consensus 8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------- 76 (350)
|++..+..+..++...|++++|...++.+....|.+..++..++.++...|++++|...|+++.+.+..
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 116 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLER 116 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHH
Confidence 677788888888888888888888888887766777888888888888888888888888777554320
Q ss_pred --------------------------------------------------------------------------------
Q 018782 77 -------------------------------------------------------------------------------- 76 (350)
Q Consensus 77 -------------------------------------------------------------------------------- 76 (350)
T Consensus 117 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (514)
T 2gw1_A 117 NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSN 196 (514)
T ss_dssp HHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 018782 77 --------------------------------------VDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYS 118 (350)
Q Consensus 77 --------------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 118 (350)
.+..++..+..++...|++++|...++++.+.. |+...+.
T Consensus 197 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~ 274 (514)
T 2gw1_A 197 LYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYI 274 (514)
T ss_dssp HSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHH
Confidence 011223333344444455555555555544432 2244455
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc
Q 018782 119 IFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRA 198 (350)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 198 (350)
.+..++...|++++|...++.+.+.. +.+..++..+..++...|++++|...++++.+.... +...+..+...+...|
T Consensus 275 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 352 (514)
T 2gw1_A 275 YMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYREN 352 (514)
T ss_dssp HHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcC
Confidence 55555555555555555555554433 234555666666666667777777777766665433 4556666677777777
Q ss_pred CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHhh---ccCc
Q 018782 199 EVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFY-PS----VSTYSVMVHGLCK---KKGK 270 (350)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~ll~~~~~---~~~~ 270 (350)
++++|...++.+.+.. +.+...+..+..++...|++++|...++++.+.... ++ ...+..+...+.. . |+
T Consensus 353 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~ 430 (514)
T 2gw1_A 353 KFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV-EN 430 (514)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCT-TH
T ss_pred CHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhc-CC
Confidence 7777777777776643 234566777777777788888888877777653111 11 2256666666655 4 78
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHH
Q 018782 271 LEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQEL 327 (350)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 327 (350)
+++|...++++.... +.+..++..+..++.+.|++++|...+++..+.++..+...
T Consensus 431 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 486 (514)
T 2gw1_A 431 FIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL 486 (514)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence 888888888877765 55677777888888888888888888888877766655443
No 11
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=4.1e-22 Score=164.73 Aligned_cols=293 Identities=11% Similarity=0.054 Sum_probs=175.2
Q ss_pred CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782 6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSL 85 (350)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (350)
.+.++..+..+...+...|++++|.++|+.+....|.+...+..++.++...|++++|...++++.+... .+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHH
Confidence 3445555666666666667777777777766665566666666666666666777777777766666532 255666666
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC
Q 018782 86 LEAMCKAG-NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK 164 (350)
Q Consensus 86 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (350)
...+...| ++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 66666666 6666777776666543 2344556666666666677777776666665543 2334555556666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC--------CCCChhHHHHHHHHHHHcCCHh
Q 018782 165 VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN--------VMPDRHTYNMVLKLLVRVGRFD 236 (350)
Q Consensus 165 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~ 236 (350)
+++|...++++.+.... +...+..+...+...|++++|...++.+.... .+....++..+..++...|+++
T Consensus 175 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 66666666666655332 45566666666666666666666666655431 0222345666666666666666
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCC
Q 018782 237 RATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL-VGLGF 305 (350)
Q Consensus 237 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 305 (350)
+|...++++.+... .+...+..+...+... |++++|...++++.+.. |.+...+..+..++ ...|+
T Consensus 254 ~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 254 EALDYHRQALVLIP-QNASTYSAIGYIHSLM-GNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHHHHHHHST-TCSHHHHHHHHHHHHH-TCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHhhCc-cchHHHHHHHHHHHHh-ccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 66666666665421 1344445555554444 66666666666666554 44555666666555 33444
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.5e-22 Score=172.88 Aligned_cols=306 Identities=13% Similarity=0.018 Sum_probs=254.4
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAM 89 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (350)
...+......+.+.|++++|+..|+++.... |++.+|..+..++...|++++|...++++.+.+ +.+..++..+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK-EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 4567778889999999999999999998754 589999999999999999999999999999875 44788999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--------------------------------------------------------
Q 018782 90 CKAGNIDEAHGMLREMRSIGAEPD-------------------------------------------------------- 113 (350)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~-------------------------------------------------------- 113 (350)
...|++++|...|+++.+.+...+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999999987642110
Q ss_pred ----------------------HhhHHHHHHHHHh---cCCHhHHHHHHHHHhh-----CCC--------CccHHHHHHH
Q 018782 114 ----------------------AFSYSIFIHAFCE---ANDIHSVFRVLDSMKR-----YNL--------VPNVFTYNCI 155 (350)
Q Consensus 114 ----------------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l 155 (350)
...+......+.. .|++++|..+|+++.+ ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 2222333333333 7999999999999877 311 2345678888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCH
Q 018782 156 IRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRF 235 (350)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 235 (350)
...+...|++++|...++++.+.... ...+..+...+...|++++|...++.+..... .+...+..+..++...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCH
Confidence 99999999999999999999988544 88888999999999999999999999988653 4677899999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 018782 236 DRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADK 315 (350)
Q Consensus 236 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 315 (350)
++|...++++.+.... +...+..+...+... |++++|...++++.+.. +.+..++..+...+...|++++|...+++
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRE-NKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTT-TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999976332 456677777766655 99999999999999875 66788999999999999999999999999
Q ss_pred hhccCCCc
Q 018782 316 MERSTSCT 323 (350)
Q Consensus 316 ~~~~~~~~ 323 (350)
+.+..+..
T Consensus 398 a~~~~~~~ 405 (514)
T 2gw1_A 398 AIELENKL 405 (514)
T ss_dssp HHHHHHTS
T ss_pred HHHhhhcc
Confidence 87654443
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=5.8e-21 Score=157.79 Aligned_cols=283 Identities=9% Similarity=-0.034 Sum_probs=241.8
Q ss_pred cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 018782 39 EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYS 118 (350)
Q Consensus 39 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 118 (350)
..+.+...+..++..+...|++++|.++|+++.+... .+...+..++.++...|++++|..+++++.+.. +.+...+.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 4567788899999999999999999999999998743 366777778899999999999999999999864 34677888
Q ss_pred HHHHHHHhcC-CHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 018782 119 IFIHAFCEAN-DIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDR 197 (350)
Q Consensus 119 ~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 197 (350)
.+...+...| ++++|...|+++.+.. +.+...+..+..++...|++++|...++++.+.... +...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 9999999999 9999999999998865 446788999999999999999999999999987544 566777789999999
Q ss_pred cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcC--------CCCCHHHHHHHHHHHhhccC
Q 018782 198 AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRG--------FYPSVSTYSVMVHGLCKKKG 269 (350)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~ll~~~~~~~~ 269 (350)
|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. .......+..+...+... |
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g 250 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL-K 250 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHT-T
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHh-c
Confidence 99999999999999875 3467889999999999999999999999988641 123356777777777766 9
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHH
Q 018782 270 KLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELA 328 (350)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 328 (350)
++++|...++++.+.. +.+...+..+..++.+.|++++|.+.+++..+..+.......
T Consensus 251 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 308 (330)
T 3hym_B 251 KYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVT 308 (330)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHH
T ss_pred CHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHH
Confidence 9999999999999876 668899999999999999999999999999998877765544
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=3.6e-21 Score=169.84 Aligned_cols=238 Identities=11% Similarity=0.067 Sum_probs=142.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc
Q 018782 82 HNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK 161 (350)
Q Consensus 82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (350)
+..+...+...|++++|...++++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+..++..
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHh
Confidence 333444455555566666666665553 2335555555666666666666666666665543 3345566666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHH
Q 018782 162 NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEV 241 (350)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 241 (350)
.|++++|...++++.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 66666666666666655432 44556666666666666666666666666543 23445666666666677777777777
Q ss_pred HHHHHhcCC-----CCCHHHHHHHHHHHhhcc----------CcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCCh
Q 018782 242 WESMEKRGF-----YPSVSTYSVMVHGLCKKK----------GKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFL 306 (350)
Q Consensus 242 ~~~~~~~~~-----~p~~~~~~~ll~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 306 (350)
|+++.+... ......+......+ ... |++++|...|+++.+.. +.+...+..+..++.+.|++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~ 478 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATIL-ARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKI 478 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHH-HHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHH-HHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccH
Confidence 766654310 00111111111222 223 77778888888777765 56778888888888888888
Q ss_pred hHHHHHHHHhhccCCCcHHH
Q 018782 307 DIIEILADKMERSTSCTIQE 326 (350)
Q Consensus 307 ~~a~~~~~~~~~~~~~~~~~ 326 (350)
++|...+++..+..+.....
T Consensus 479 ~~A~~~~~~al~~~~~~~~~ 498 (537)
T 3fp2_A 479 DEAIELFEDSAILARTMDEK 498 (537)
T ss_dssp HHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHHHHHHHHhCCCcHHH
Confidence 88888888888776665544
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.6e-19 Score=150.84 Aligned_cols=289 Identities=10% Similarity=-0.001 Sum_probs=238.3
Q ss_pred CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CCHHHHHH
Q 018782 7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCP--VDILAHNS 84 (350)
Q Consensus 7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 84 (350)
+.++..+..+...+...|++++|...|+.+....|.+...+..+..++...|++++|...|+++.+.... .+...+..
T Consensus 34 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 34 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113 (359)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence 3456788889999999999999999999998877888999999999999999999999999999987430 24555555
Q ss_pred H------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHH
Q 018782 85 L------------LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTY 152 (350)
Q Consensus 85 l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 152 (350)
+ ...+...|++++|++.++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++
T Consensus 114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 191 (359)
T 3ieg_A 114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAF 191 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 5 578899999999999999999864 4577889999999999999999999999998875 5678899
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH------------HHHHHhcccCHHHHHHHHHHHHhCCCCCCh-
Q 018782 153 NCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNA------------ILAYHCDRAEVNMALRLITRMTKENVMPDR- 219 (350)
Q Consensus 153 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 219 (350)
..+...+...|++++|...+++..+.... +...+.. +...+...|++++|...++.+.+.... +.
T Consensus 192 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~ 269 (359)
T 3ieg_A 192 YKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAE 269 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chH
Confidence 99999999999999999999999987543 4443332 256688999999999999999886432 33
Q ss_pred ---hHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 018782 220 ---HTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEML 296 (350)
Q Consensus 220 ---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 296 (350)
..+..+..++...|++++|...+++..+.. +.+...+..+...+... |++++|...|+++.+.. |.+...+..+
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~a~~~~-p~~~~~~~~l 346 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIE-EMYDEAIQDYEAAQEHN-ENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 235567889999999999999999999862 23667777777777666 99999999999999886 5667777777
Q ss_pred HHHHHc
Q 018782 297 RNRLVG 302 (350)
Q Consensus 297 ~~~~~~ 302 (350)
..+...
T Consensus 347 ~~~~~~ 352 (359)
T 3ieg_A 347 EKAQRL 352 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=7.9e-21 Score=159.58 Aligned_cols=292 Identities=13% Similarity=0.019 Sum_probs=229.1
Q ss_pred HHHccCChHHHHH-HHHHhhhcCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018782 19 ALCKRKHVKVAHQ-FFDNAKHEFTP----TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG 93 (350)
Q Consensus 19 ~~~~~g~~~~a~~-~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 93 (350)
.+...|++++|.. .|++.....+. +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3445678888888 88876442222 35668899999999999999999999999874 447889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHH---------------HHHH
Q 018782 94 NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNC---------------IIRK 158 (350)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~ 158 (350)
++++|+..|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+.. .+..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 9999999999999864 4577889999999999999999999999998764 222222221 2333
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhH
Q 018782 159 LCKNEKVEEAYQLLDEMIERGANP-DEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDR 237 (350)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 237 (350)
+...|++++|...++++.+..+.. +..++..+...+...|++++|...++.+.... +.+...+..+..++...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 448899999999999999875332 57889999999999999999999999998864 3467889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHcCCCh
Q 018782 238 ATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPY-----------SSTVEMLRNRLVGLGFL 306 (350)
Q Consensus 238 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~ 306 (350)
|...|+++.+.. +.+...+..+...+... |++++|...|+++.... +.+ ..+|..+..++...|++
T Consensus 270 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 270 AVAAYRRALELQ-PGYIRSRYNLGISCINL-GAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 999999998763 23567777777777766 99999999999988654 222 78999999999999999
Q ss_pred hHHHHHHHHhh
Q 018782 307 DIIEILADKME 317 (350)
Q Consensus 307 ~~a~~~~~~~~ 317 (350)
++|..++++..
T Consensus 347 ~~A~~~~~~~l 357 (368)
T 1fch_A 347 DAYGAADARDL 357 (368)
T ss_dssp GGHHHHHTTCH
T ss_pred HhHHHhHHHHH
Confidence 99999887543
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=2.9e-20 Score=164.07 Aligned_cols=303 Identities=16% Similarity=0.101 Sum_probs=243.7
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAM 89 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (350)
...+..+...+.+.|++++|...|+.+....|.++.++..+..++...|++++|++.|+++.+.++ .+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHH
Confidence 456777888999999999999999999887888999999999999999999999999999998753 4788999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC------------------------------------CCHh------------------
Q 018782 90 CKAGNIDEAHGMLREMRSIGAE------------------------------------PDAF------------------ 115 (350)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~------------------------------------~~~~------------------ 115 (350)
...|++++|+..|+.+...... |+..
T Consensus 104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 9999999999999644211100 1100
Q ss_pred ------------hHHHHHHHHH--------hcCCHhHHHHHHHHHhhCCCCcc-------HHHHHHHHHHHHccCCHHHH
Q 018782 116 ------------SYSIFIHAFC--------EANDIHSVFRVLDSMKRYNLVPN-------VFTYNCIIRKLCKNEKVEEA 168 (350)
Q Consensus 116 ------------~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a 168 (350)
....+...+. ..|++++|..+++++.+.. +.+ ..++..+...+...|++++|
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 1111111111 1247889999999998764 222 23566777888899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782 169 YQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR 248 (350)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 248 (350)
...++++.+.. |+...+..+...+...|+++.|...++.+.+... .+..++..+..++...|++++|...++++.+.
T Consensus 263 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 339 (537)
T 3fp2_A 263 QVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL 339 (537)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 99999999874 5578888899999999999999999999988653 46788999999999999999999999999976
Q ss_pred CCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccC
Q 018782 249 GFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERST 320 (350)
Q Consensus 249 ~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 320 (350)
... +...+..+...+... |++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 340 ~~~-~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 340 NPE-NVYPYIQLACLLYKQ-GKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp CTT-CSHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 322 456677777777666 99999999999999886 6778899999999999999999999999987643
No 18
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=2.6e-20 Score=156.35 Aligned_cols=267 Identities=12% Similarity=0.008 Sum_probs=194.4
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 018782 42 PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFI 121 (350)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 121 (350)
.+...+..+...+.+.|++++|...|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 345557777888888888888888888887764 3367788888888888888888888888887753 34566778888
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCCCcc-----------HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHH
Q 018782 122 HAFCEANDIHSVFRVLDSMKRYNLVPN-----------VFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-PDEWSYNA 189 (350)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 189 (350)
.++...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++.+.... ++..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 88888888888888888876643 22 222334577888888888888888888877433 15778888
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccC
Q 018782 190 ILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKG 269 (350)
Q Consensus 190 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 269 (350)
+...+...|++++|...++++.+.. +.+..+|..+..+|...|++++|...|+++.+.. +.+...+..+...+... |
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~-g 295 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINL-G 295 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC-C
Confidence 8888888888999998888888764 3467788888888888999999999998888752 22466677777776655 8
Q ss_pred cHHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHcCCChhHHHHHHHH
Q 018782 270 KLEEACKYFEMMVDEGI-----------PPYSSTVEMLRNRLVGLGFLDIIEILADK 315 (350)
Q Consensus 270 ~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 315 (350)
++++|...|+++.+... ..+..+|..+..++...|+.+.+.++.++
T Consensus 296 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 296 AYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 89999999888875430 01367888999999999999888887765
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=1.1e-19 Score=152.50 Aligned_cols=267 Identities=12% Similarity=-0.007 Sum_probs=224.9
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA 88 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (350)
+...+..+...+...|++++|...|+.+....|.+..++..+..++...|++++|...|+++.+.. +.+..++..+..+
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 141 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS 141 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 356688889999999999999999999988778899999999999999999999999999999875 3488999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH---------------HHHHHHhcCCHhHHHHHHHHHhhCCCCc--cHHH
Q 018782 89 MCKAGNIDEAHGMLREMRSIGAEPDAFSYSI---------------FIHAFCEANDIHSVFRVLDSMKRYNLVP--NVFT 151 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~ 151 (350)
+...|++++|...++++.+.... +...+.. .+..+...|++++|...++++.+.. +. +..+
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~ 219 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDV 219 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHH
Confidence 99999999999999999986432 2222221 2333448899999999999998764 22 5788
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 018782 152 YNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVR 231 (350)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (350)
+..+..++...|++++|...++++.+.... +..++..+...+...|++++|...++.+.+.. +.+...+..+..++..
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 999999999999999999999999987533 67889999999999999999999999998864 3467889999999999
Q ss_pred cCCHhHHHHHHHHHHhcCCCC----------CHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 018782 232 VGRFDRATEVWESMEKRGFYP----------SVSTYSVMVHGLCKKKGKLEEACKYFEMM 281 (350)
Q Consensus 232 ~~~~~~a~~~~~~~~~~~~~p----------~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 281 (350)
.|++++|...|+++.+..... ....|..+..++... |++++|..++++.
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 356 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML-GQSDAYGAADARD 356 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH-TCGGGHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh-CChHhHHHhHHHH
Confidence 999999999999988642111 157788888887766 9999999888743
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=7e-20 Score=151.08 Aligned_cols=281 Identities=14% Similarity=0.024 Sum_probs=181.0
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA 88 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (350)
+...+..+...+...|++++|..+|+.+....|.+...+..+..++...|++++|.+.++++.+.. +.+..++..+..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 344556666777777777777777777766666677777777777777777777777777777663 3366677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHH-HH-HHHccCCHH
Q 018782 89 MCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCI-IR-KLCKNEKVE 166 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~ 166 (350)
+...|++++|.+.++++.+... .+...+..+... .|+......+ .. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 7777777777777777776531 122222222100 0111111112 11 256667777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 018782 167 EAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESME 246 (350)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 246 (350)
+|...++++.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777666433 56667777777777777777777777776653 2345667777777777788888888777777
Q ss_pred hcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC------------CHHHHHHHHHHHHcCCChhHHHHHHH
Q 018782 247 KRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPP------------YSSTVEMLRNRLVGLGFLDIIEILAD 314 (350)
Q Consensus 247 ~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~ 314 (350)
+.. +.+...+..+...+... |++++|...++++.... +. +..++..+..++.+.|++++|..+++
T Consensus 234 ~~~-~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 234 DIN-PGYVRVMYNMAVSYSNM-SQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HcC-CCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 642 22455666666666555 78888888887776654 22 46777888888888888888888777
Q ss_pred Hhhc
Q 018782 315 KMER 318 (350)
Q Consensus 315 ~~~~ 318 (350)
+...
T Consensus 311 ~~l~ 314 (327)
T 3cv0_A 311 QNVE 314 (327)
T ss_dssp CCSH
T ss_pred HHHH
Confidence 6543
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=1.4e-20 Score=157.91 Aligned_cols=237 Identities=12% Similarity=0.040 Sum_probs=145.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHH
Q 018782 78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIR 157 (350)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (350)
+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44456666667777777777777777776653 3355666777777777777777777777766653 335666677777
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCC-CChhHHHHHHH
Q 018782 158 KLCKNEKVEEAYQLLDEMIERGANP---------DEWSYNAILAYHCDRAEVNMALRLITRMTKENVM-PDRHTYNMVLK 227 (350)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 227 (350)
+|...|++++|...++++.+..... ....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 7777777777777777766542110 0112233455666777777777777776665321 14566666777
Q ss_pred HHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChh
Q 018782 228 LLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLD 307 (350)
Q Consensus 228 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 307 (350)
.+...|++++|...|+++.+.. +.+...+..+...+... |++++|...|+++.+.. |.+..++..+..+|.+.|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANG-DRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 7777777777777777766542 22455666666665554 77777777777776654 455666777777777777777
Q ss_pred HHHHHHHHhhcc
Q 018782 308 IIEILADKMERS 319 (350)
Q Consensus 308 ~a~~~~~~~~~~ 319 (350)
+|...++++.+.
T Consensus 299 ~A~~~~~~al~~ 310 (365)
T 4eqf_A 299 EAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777766554
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.87 E-value=2e-19 Score=148.30 Aligned_cols=274 Identities=11% Similarity=-0.004 Sum_probs=189.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 018782 44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA 123 (350)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (350)
...+..+...+...|++++|..+|+++.+... .+..++..+..++...|++++|...++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 34556667777777777777777777776533 366677777777777777777777777776653 3355566666677
Q ss_pred HHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhcccCHH
Q 018782 124 FCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILA--YHCDRAEVN 201 (350)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~ 201 (350)
+...|++++|...++++.+.. +.+...+..+... .|+......+.. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 777777777777777766543 1111111111100 011111112213 377889999
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHH
Q 018782 202 MALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMM 281 (350)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 281 (350)
+|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+... |++++|...++++
T Consensus 156 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a 232 (327)
T 3cv0_A 156 ECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANG-NRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 99999999988653 467889999999999999999999999998763 23567777787777766 9999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCc-----------HHHHHHHhcccccccccccchhh
Q 018782 282 VDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCT-----------IQELANAMRGKTGFRKSRSEETE 346 (350)
Q Consensus 282 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~ 346 (350)
.+.. +.+...+..+..++...|++++|.+.++++.+..+.. .......+...+...+...++.+
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 9876 6678999999999999999999999999998766552 34445555555555555544443
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=6.2e-18 Score=136.74 Aligned_cols=274 Identities=12% Similarity=0.055 Sum_probs=202.5
Q ss_pred HHHHccCChHHHHHHHHHhhhcCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018782 18 HALCKRKHVKVAHQFFDNAKHEFTPT-VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNID 96 (350)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 96 (350)
+.....|+++.|+..++.+....|.+ ......+.++|...|+++.|+..++. .-+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 45566899999999988875533333 34667778899999999999886654 23557778888888999999999
Q ss_pred HHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782 97 EAHGMLREMRSIGAEP-DAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEM 175 (350)
Q Consensus 97 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 175 (350)
+|++.++++...+..| +...+..+...+...|++++|+..+++ +.+...+..++..+.+.|++++|...++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999988776444 455667777889999999999999887 467788888899999999999999999999
Q ss_pred HHcCCCCCHHHH---HHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Q 018782 176 IERGANPDEWSY---NAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP 252 (350)
Q Consensus 176 ~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 252 (350)
.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+... -
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-G 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence 8874 443211 223344445688999999999988874 45778888899999999999999999999887632 2
Q ss_pred CHHHHHHHHHHHhhccCcHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 018782 253 SVSTYSVMVHGLCKKKGKLEE-ACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEI 311 (350)
Q Consensus 253 ~~~~~~~ll~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 311 (350)
+..++..++..+... |+.++ +.++++++.+.. |.++.+. ....+.+.++++..
T Consensus 233 ~~~~l~~l~~~~~~~-g~~~eaa~~~~~~~~~~~-P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 233 HPETLINLVVLSQHL-GKPPEVTNRYLSQLKDAH-RSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp CHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHC-TTCHHHH----HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhC-CCChHHH----HHHHHHHHHHHHHH
Confidence 566777777666655 77755 678888888775 4444332 23444444444443
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=1.7e-18 Score=139.96 Aligned_cols=260 Identities=11% Similarity=0.080 Sum_probs=210.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 018782 51 VRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDI 130 (350)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (350)
++-....|+++.|+..+++.......+.......+.++|...|+++.|+..++. . -+|+..++..+...+...++.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 344556799999999998876542222234556788999999999999987654 2 356777889999999999999
Q ss_pred hHHHHHHHHHhhCCC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHH
Q 018782 131 HSVFRVLDSMKRYNL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITR 209 (350)
Q Consensus 131 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 209 (350)
++|++.++++...+. +.+...+..+..++...|++++|+..+++ ..+...+..+...+.+.|++++|.+.++.
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999987654 34566777788999999999999999987 35788899999999999999999999999
Q ss_pred HHhCCCCCChhHHHHH----HHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782 210 MTKENVMPDRHTYNMV----LKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG 285 (350)
Q Consensus 210 ~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 285 (350)
+.+.. |+.. ...+ +..+...|++++|..+|+++.+. .+.+...++.+..++... |++++|...|+++....
T Consensus 156 ~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~-g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 156 MQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQ-GRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC
T ss_pred HHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Confidence 98864 5532 2223 33344458999999999999986 345777888888777766 99999999999999887
Q ss_pred CCCCHHHHHHHHHHHHcCCChhH-HHHHHHHhhccCCCcHHH
Q 018782 286 IPPYSSTVEMLRNRLVGLGFLDI-IEILADKMERSTSCTIQE 326 (350)
Q Consensus 286 ~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~ 326 (350)
|.++.++..++..+...|+.++ +.++++++.+.+|..+..
T Consensus 231 -p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~ 271 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI 271 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence 7789999999999999999976 678999999888777654
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.6e-18 Score=143.65 Aligned_cols=268 Identities=12% Similarity=0.088 Sum_probs=119.5
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782 8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLE 87 (350)
Q Consensus 8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 87 (350)
+++.+|..+..++.+.|++++|++.|.+. ++...|..++..+...|++++|+..++...+. .+++.+.+.++.
T Consensus 30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~ 102 (449)
T 1b89_A 30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 102 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHH
Confidence 34557888888888888888888888653 46667888888888888888888877666553 335677778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHH
Q 018782 88 AMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEE 167 (350)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 167 (350)
+|.+.|+++++.++++ .|+..+|..++..|...|.+++|..+|..+ ..|..++.++.+.|++++
T Consensus 103 ~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 103 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA 166 (449)
T ss_dssp ------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHH
T ss_pred HHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHH
Confidence 8888888888777774 256668888888888888888888888866 367788888888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782 168 AYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEK 247 (350)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 247 (350)
|.+.++++ .++.+|..++.+|...|+++.|...... +..++.-...++..|.+.|.+++|..+++....
T Consensus 167 AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 167 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 88888877 2678888888888888888888554443 222333455677888888888888888888876
Q ss_pred cCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHH-hCCCCC------CHHHHHHHHHHHHcCCChhHHHHH
Q 018782 248 RGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMV-DEGIPP------YSSTVEMLRNRLVGLGFLDIIEIL 312 (350)
Q Consensus 248 ~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~-~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~ 312 (350)
.. .-....|+-+-..|++- ++++..+.++... +-+++| +...|..++-.|..-++++.|...
T Consensus 236 le-~ah~~~ftel~il~~ky--~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 236 LE-RAHMGMFTELAILYSKF--KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp ST-TCCHHHHHHHHHHHHTT--CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 53 34566666665555542 4444444444332 223333 456678888888888888877764
No 26
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=1.5e-17 Score=128.68 Aligned_cols=199 Identities=13% Similarity=0.010 Sum_probs=113.3
Q ss_pred CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782 7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL 86 (350)
Q Consensus 7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 86 (350)
|+++..+..+...+...|++++|...|++.....|.++..+..+..++.+.|++++|+..|++..+..+ .+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 556666677777777777777777777777666666777777777777777777777777777766633 2566666666
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHH
Q 018782 87 EAMCKA-----------GNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCI 155 (350)
Q Consensus 87 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (350)
.++... |++++|+..|++..+.. +-+...+..+..++...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 666666 66666666666665542 2234455555555666666666666666555544 455555555
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHH
Q 018782 156 IRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRM 210 (350)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 210 (350)
..++...|++++|...|++..+..+. +...+..+...+...|++++|...+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55566666666666666655554322 4445555555555555555555555443
No 27
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=8.6e-17 Score=127.83 Aligned_cols=226 Identities=12% Similarity=0.083 Sum_probs=150.1
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CC----HHHHH
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCP--VD----ILAHN 83 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~ 83 (350)
...+..+...+...|++++|...|+.+.... .+...+..+..++...|++++|...+++..+.... ++ ..++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3456666777777777777777777776644 66777777777777777777777777776654221 11 46677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccC
Q 018782 84 SLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNE 163 (350)
Q Consensus 84 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (350)
.+..++...|++++|...|++..+. .|+. ..+...|++++|...++.+.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 7777777777777777777777764 2332 33455566777777777776643 334556666667777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHH
Q 018782 164 KVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWE 243 (350)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 243 (350)
++++|...++++.+.... +..++..+...+...|++++|...++...+.. +.+...+..+..++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 777777777777665433 56666666677777777777777777766653 2345666666777777777777777776
Q ss_pred HHHhc
Q 018782 244 SMEKR 248 (350)
Q Consensus 244 ~~~~~ 248 (350)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66543
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=1.1e-15 Score=134.64 Aligned_cols=306 Identities=11% Similarity=0.056 Sum_probs=186.4
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782 8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLE 87 (350)
Q Consensus 8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 87 (350)
-|...|..++.. .+.|+++.|..+|+++....|.+...|..++..+.+.|++++|..+|++..... |+...|...+.
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 356678888874 678999999999999988888899999999999999999999999999988763 46655554443
Q ss_pred HH-Hh--------------------------------------------------cCCHHHHHHHHHHHHhCCCCCCHhh
Q 018782 88 AM-CK--------------------------------------------------AGNIDEAHGMLREMRSIGAEPDAFS 116 (350)
Q Consensus 88 ~~-~~--------------------------------------------------~~~~~~a~~~~~~~~~~~~~~~~~~ 116 (350)
.. .. .|+++.|..+|++.++.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 11 12 2444555555555554210000112
Q ss_pred HHHHHHHH-------------HhcCCHh----------------------------------------------------
Q 018782 117 YSIFIHAF-------------CEANDIH---------------------------------------------------- 131 (350)
Q Consensus 117 ~~~l~~~~-------------~~~~~~~---------------------------------------------------- 131 (350)
|....... .+.+++.
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 21111100 0001111
Q ss_pred --------HHHHHHHHHhhCCCCccHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHH
Q 018782 132 --------SVFRVLDSMKRYNLVPNVFTYNCIIRKLCK-------NEKVE-------EAYQLLDEMIERGANPDEWSYNA 189 (350)
Q Consensus 132 --------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~ 189 (350)
.+..+|++..... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...|..
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~ 326 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence 1222233322221 2233444444444443 56665 67777777765211224666777
Q ss_pred HHHHHhcccCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhc
Q 018782 190 ILAYHCDRAEVNMALRLITRMTKENVMPD--RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKK 267 (350)
Q Consensus 190 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 267 (350)
++..+.+.|++++|..+|+.+.+. .|+ ...|..++..+.+.|++++|..+|++..+... .+...+..........
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHH
Confidence 777777777888888888777774 333 24677777777777778888888877776421 1222222211111112
Q ss_pred cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCC
Q 018782 268 KGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTS 321 (350)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 321 (350)
.|+.++|..+|++..+.. |.++..|..++..+.+.|+.++|..+|++.....+
T Consensus 404 ~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp TCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred cCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 378888888888877764 55678888888888888888888888888876543
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=1e-14 Score=127.16 Aligned_cols=291 Identities=11% Similarity=0.019 Sum_probs=146.8
Q ss_pred HhhHHHHHHHHHc----cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCHHH
Q 018782 10 IYDLDQLLHALCK----RKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGD----VGELSEARKLFDEMLERKCPVDILA 81 (350)
Q Consensus 10 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 81 (350)
+..+..+...|.. .+++++|.++|++.... .++..+..|...|.. .+++++|...|++..+.| +...
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 149 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSG 149 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 3344445555554 55555555555554431 234444455555544 455555555555555443 3444
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCC--------
Q 018782 82 HNSLLEAMCK----AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE----ANDIHSVFRVLDSMKRYNL-------- 145 (350)
Q Consensus 82 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~-------- 145 (350)
+..+...|.. .++.++|++.|++..+.| +...+..+...|.. .++.++|..+|++..+.|.
T Consensus 150 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg 226 (490)
T 2xm6_A 150 QQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLA 226 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4445555544 445555555555555432 33444444444444 4445555555544444320
Q ss_pred -------------------------CccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 018782 146 -------------------------VPNVFTYNCIIRKLCK----NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD 196 (350)
Q Consensus 146 -------------------------~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 196 (350)
..+...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDK 303 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc
Confidence 0122333333344443 455555555555544432 33344444444444
Q ss_pred c-----cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC---CHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh--
Q 018782 197 R-----AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVG---RFDRATEVWESMEKRGFYPSVSTYSVMVHGLCK-- 266 (350)
Q Consensus 197 ~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-- 266 (350)
. +++++|...++...+.+ +...+..+...|...| ++++|.+.|++..+.+ +...+..+-..|..
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~ 377 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGK 377 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred CCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 3 55555555555555543 2334445555555444 5556666666665542 34444444444443
Q ss_pred --ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHhhccCC
Q 018782 267 --KKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG----LGFLDIIEILADKMERSTS 321 (350)
Q Consensus 267 --~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 321 (350)
. +++++|...|++..+.+ ++..+..+...|.. .++.++|..+|++..+.++
T Consensus 378 g~~-~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 378 GVK-KDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSC-CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCC-CCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 2 56666666666666654 45566666666665 6667777777776666553
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=159.95 Aligned_cols=151 Identities=11% Similarity=0.107 Sum_probs=122.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 018782 43 TVKTYSILVRGLGDVGELSEARKLFDEMLE---RKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI 119 (350)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 119 (350)
...+|+++|++|++.|++++|.++|++|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346799999999999999999999988764 57899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCH-hHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHH
Q 018782 120 FIHAFCEANDI-HSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPD------EWSYNAILA 192 (350)
Q Consensus 120 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~ll~ 192 (350)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+. .+++.++++ ..+..|+ ..+...|..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999984 78999999999999999999999888654443 333333333 2233333 344555566
Q ss_pred HHhccc
Q 018782 193 YHCDRA 198 (350)
Q Consensus 193 ~~~~~~ 198 (350)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666544
No 31
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.79 E-value=2.1e-14 Score=125.09 Aligned_cols=291 Identities=12% Similarity=0.041 Sum_probs=201.9
Q ss_pred CHhhHHHHHHHHHc----cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCHH
Q 018782 9 SIYDLDQLLHALCK----RKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGD----VGELSEARKLFDEMLERKCPVDIL 80 (350)
Q Consensus 9 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 80 (350)
++..+..+...|.. .+++++|..+|++.... .++..+..|...|.. .+++++|.+.|++..+.| +..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 67778888888887 89999999999998663 467888899999988 899999999999998875 678
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCCCccHHHH
Q 018782 81 AHNSLLEAMCK----AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE----ANDIHSVFRVLDSMKRYNLVPNVFTY 152 (350)
Q Consensus 81 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 152 (350)
.+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .++.++|..+|++..+.| +...+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 88889999988 889999999999999875 56678888888887 789999999999998865 56777
Q ss_pred HHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----ccCHHHHHHHHHHHHhCCCCCChhHHHH
Q 018782 153 NCIIRKLCK----NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD----RAEVNMALRLITRMTKENVMPDRHTYNM 224 (350)
Q Consensus 153 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (350)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|..+|+...+.+ +...+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 778888877 788888888888877654 44455555555543 556666666666655432 2233334
Q ss_pred HHHHHHH----cCCHhHHHHHHHHHHhcCCC----------------------------------CCHHHHHHHHHHHhh
Q 018782 225 VLKLLVR----VGRFDRATEVWESMEKRGFY----------------------------------PSVSTYSVMVHGLCK 266 (350)
Q Consensus 225 l~~~~~~----~~~~~~a~~~~~~~~~~~~~----------------------------------p~~~~~~~ll~~~~~ 266 (350)
+...|.. .+++++|...|++..+.|.. .+...+..+-..+..
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFR 340 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 4444444 44444444444444432110 122233333333332
Q ss_pred ccC---cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHhhccC
Q 018782 267 KKG---KLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG----LGFLDIIEILADKMERST 320 (350)
Q Consensus 267 ~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 320 (350)
. | ++++|+++|++..+.+ ++..+..+...|.. .+++++|..++++..+.+
T Consensus 341 ~-g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 341 L-GSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp S-CCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred C-CCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 2 2 5566666666666553 45566666666666 566666666666665543
No 32
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=2e-16 Score=125.72 Aligned_cols=225 Identities=12% Similarity=0.048 Sum_probs=129.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCC--Ccc----HHHHHH
Q 018782 81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNL--VPN----VFTYNC 154 (350)
Q Consensus 81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 154 (350)
.+..+...+...|++++|+..|+++.+.. .+..++..+..++...|++++|...+++..+... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444444455555555554444433 3444444444455555555555555544433210 001 345555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 018782 155 IIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGR 234 (350)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 234 (350)
+..++...|++++|...++++.+.. |+. ..+...|++++|...++.+..... .+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcC
Confidence 5556666666666666666655542 222 234445666667776666666432 244556667777777777
Q ss_pred HhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHH
Q 018782 235 FDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILAD 314 (350)
Q Consensus 235 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 314 (350)
+++|...++++.+.. +.+...+..+...+... |++++|...++++.+.. +.+...+..+..++...|++++|...++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKL-MSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 777777777776642 22455566666665554 77777777777777665 5567777777777777777777777777
Q ss_pred HhhccC
Q 018782 315 KMERST 320 (350)
Q Consensus 315 ~~~~~~ 320 (350)
+..+..
T Consensus 232 ~a~~~~ 237 (258)
T 3uq3_A 232 AARTKD 237 (258)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 776654
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=3.9e-19 Score=159.06 Aligned_cols=150 Identities=12% Similarity=0.164 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHH
Q 018782 79 ILAHNSLLEAMCKAGNIDEAHGMLREMRS---IGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCI 155 (350)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (350)
..+|++||.+|++.|++++|.++|..|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 56899999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC------hhHHHHHHHH
Q 018782 156 IRKLCKNEKV-EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPD------RHTYNMVLKL 228 (350)
Q Consensus 156 ~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 228 (350)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+. .+++..+++ ..+..|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 9999999985 78999999999999999999999988765543 444444444 2233333 3344445555
Q ss_pred HHHcC
Q 018782 229 LVRVG 233 (350)
Q Consensus 229 ~~~~~ 233 (350)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 55443
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.6e-18 Score=143.68 Aligned_cols=252 Identities=13% Similarity=0.086 Sum_probs=113.1
Q ss_pred HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782 21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG 100 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 100 (350)
-+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+.
T Consensus 14 ~~~~~ld~A~~fae~~~-----~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 35788999999999983 3459999999999999999999999753 477899999999999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 018782 101 MLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180 (350)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 180 (350)
+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88888774 4567889999999999999999988874 367789999999999999999999999976
Q ss_pred CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782 181 NPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVM 260 (350)
Q Consensus 181 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 260 (350)
..|..+..++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.....+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 37999999999999999999999988 367999999999999999999966555432 344445567
Q ss_pred HHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC--CChhHHHHHHH
Q 018782 261 VHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGL--GFLDIIEILAD 314 (350)
Q Consensus 261 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 314 (350)
+..|.+. |++++|+.+++...... +-....|..+.-+|++- ++..+..+.|.
T Consensus 214 v~~Yek~-G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 214 INYYQDR-GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHC-CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7777655 99999999999998776 67788888888877764 34444444444
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=1.2e-16 Score=123.62 Aligned_cols=197 Identities=11% Similarity=0.009 Sum_probs=103.0
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 018782 114 AFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAY 193 (350)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 193 (350)
...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+..+. +...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 3344444444444444444444444444432 223444444444444444444444444444444322 33444444444
Q ss_pred Hhcc-----------cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782 194 HCDR-----------AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVH 262 (350)
Q Consensus 194 ~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 262 (350)
+... |++++|...+++..+..+ -+...+..+..++...|++++|...|++..+.. .+...+..+..
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 4444 677777777777666432 245566667777777777777777777777655 45666666666
Q ss_pred HHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782 263 GLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME 317 (350)
Q Consensus 263 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 317 (350)
.+... |++++|+..|+++.+.. |.+...+..+..++...|++++|...+++..
T Consensus 160 ~~~~~-g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSM-GRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHH-TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHc-CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 65554 77777777777777665 5566677777777777777777777766654
No 36
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.78 E-value=4.1e-16 Score=125.05 Aligned_cols=236 Identities=9% Similarity=-0.008 Sum_probs=149.2
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHH
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPV--DILAHNSLLE 87 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 87 (350)
+..+......+...|++++|+..|+.+....|.+...+..+..++...|++++|+..+++..+.+..+ ...+|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 44555666777777888888888877766666666677777777777788888888777777632111 2334677777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHH
Q 018782 88 AMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEE 167 (350)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 167 (350)
++...|++++|++.|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+..++..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777653 2345567777777777777777777777776653 3355556555523333447777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC---HHHHHHHHHHHHhCC-CCCC------hhHHHHHHHHHHHcCCHhH
Q 018782 168 AYQLLDEMIERGANPDEWSYNAILAYHCDRAE---VNMALRLITRMTKEN-VMPD------RHTYNMVLKLLVRVGRFDR 237 (350)
Q Consensus 168 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~~~ 237 (350)
|...++++.+.... +...+..+...+...++ +++|...++++.+.. ..|+ ...|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777777665332 35555555555555555 555666666654431 1122 1345556666666666666
Q ss_pred HHHHHHHHHhc
Q 018782 238 ATEVWESMEKR 248 (350)
Q Consensus 238 a~~~~~~~~~~ 248 (350)
|...|+++.+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 66666666654
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=8.7e-16 Score=133.27 Aligned_cols=313 Identities=10% Similarity=-0.005 Sum_probs=212.6
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhh---c-----CCCCHHHHHHHHHHHhc--cCCHHHHHHHHHHHHhcCCCCC
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKH---E-----FTPTVKTYSILVRGLGD--VGELSEARKLFDEMLERKCPVD 78 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~-----~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~ 78 (350)
...+|+.+..+|...|++++|...++++.. . .+..+.++..+..++.. .+++++|+..|++..+..+. +
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~ 171 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-N 171 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-C
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-C
Confidence 346788999999999999999999998643 1 12345677776666654 45799999999999987433 5
Q ss_pred HHHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCCCccHHH
Q 018782 79 ILAHNSLLEAM---CKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE----ANDIHSVFRVLDSMKRYNLVPNVFT 151 (350)
Q Consensus 79 ~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 151 (350)
+..+..+..++ ...++.++|++.+++..+.. +.+..++..+...+.. .+++++|.+.+++..... +.+..+
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~ 249 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDV 249 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHH
Confidence 66666665553 45677889999999988763 3355566666555544 467889999999987765 557788
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------------------ccCHHHHHHHHHHHHh
Q 018782 152 YNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD-------------------RAEVNMALRLITRMTK 212 (350)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------------~~~~~~a~~~~~~~~~ 212 (350)
+..+...|...|++++|...+++..+..+. +..++..+...|.. .+..+.|...++....
T Consensus 250 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 328 (472)
T 4g1t_A 250 LRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 999999999999999999999999987544 56666666555432 2335678888888777
Q ss_pred CCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH--HHHHHHHHHhhccCcHHHHHHHHHHHHhCC-----
Q 018782 213 ENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVS--TYSVMVHGLCKKKGKLEEACKYFEMMVDEG----- 285 (350)
Q Consensus 213 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~----- 285 (350)
.+. .+...+..+...+...|++++|...|++..+....|... .+..+........|++++|+..|++..+..
T Consensus 329 ~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~ 407 (472)
T 4g1t_A 329 AND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE 407 (472)
T ss_dssp HCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH
T ss_pred cCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH
Confidence 543 456778889999999999999999999998764333221 122222222224489999999998876542
Q ss_pred ------------------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHH
Q 018782 286 ------------------IPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQE 326 (350)
Q Consensus 286 ------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 326 (350)
-|.++.+|..+..+|...|++++|.+.|++..+.++..|..
T Consensus 408 ~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 408 KEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 14567789999999999999999999999999877666543
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.77 E-value=8.3e-15 Score=117.58 Aligned_cols=228 Identities=7% Similarity=-0.050 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCCCccHHHHHH
Q 018782 79 ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE----ANDIHSVFRVLDSMKRYNLVPNVFTYNC 154 (350)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 154 (350)
+.++..+...+...|++++|++.|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344444444555555555555555555442 123344444444554 555555555555554443 3444445
Q ss_pred HHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----ccCHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 018782 155 IIRKLCK----NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD----RAEVNMALRLITRMTKENVMPDRHTYNMVL 226 (350)
Q Consensus 155 l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 226 (350)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+.
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 5555555 555555555555555542 44455555555555 566666666666655543 334555555
Q ss_pred HHHHH----cCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh----ccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 018782 227 KLLVR----VGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCK----KKGKLEEACKYFEMMVDEGIPPYSSTVEMLRN 298 (350)
Q Consensus 227 ~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (350)
..|.. .+++++|...|++..+.+ +...+..+-..+.. . +++++|+..|++..+.+ +...+..+..
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~-~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGAT-KNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSC-CCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 66665 666666666666666542 33444444444444 3 67777777777766664 2556666667
Q ss_pred HHHc----CCChhHHHHHHHHhhccCCCcHH
Q 018782 299 RLVG----LGFLDIIEILADKMERSTSCTIQ 325 (350)
Q Consensus 299 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 325 (350)
.|.. .+++++|.+.+++..+.++....
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 7776 77777777777777766544433
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.76 E-value=9.4e-16 Score=128.12 Aligned_cols=229 Identities=11% Similarity=0.072 Sum_probs=151.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782 11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGE-LSEARKLFDEMLERKCPVDILAHNSLLEAM 89 (350)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (350)
..|..+..++...|++++|+..|+++....|.+..+|+.+..++...|+ +++|+..|++.++.... +...|+.+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 3455666666777777777777777776666777777777777777775 77777777777776443 667777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc-cCCHHHH
Q 018782 90 CKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK-NEKVEEA 168 (350)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a 168 (350)
...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++++.. +.+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 77777777777777777653 3356667777777777777777777777776654 3456677777777776 4444555
Q ss_pred -----HHHHHHHHHcCCCCCHHHHHHHHHHHhccc--CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC--------
Q 018782 169 -----YQLLDEMIERGANPDEWSYNAILAYHCDRA--EVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVG-------- 233 (350)
Q Consensus 169 -----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------- 233 (350)
+..+++..+.... +...|..+...+...| ++++|.+.+..+ +. .+.+...+..+..+|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence 3666666665433 5556666666666655 466666666665 32 2234555666666666653
Q ss_pred -CHhHHHHHHHHH
Q 018782 234 -RFDRATEVWESM 245 (350)
Q Consensus 234 -~~~~a~~~~~~~ 245 (350)
.+++|.++|+++
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 246666666666
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.76 E-value=4.2e-16 Score=124.97 Aligned_cols=250 Identities=9% Similarity=-0.007 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHH
Q 018782 44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPD--AFSYSIFI 121 (350)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 121 (350)
+..+......+...|++++|+..|++..+.... +...+..+..++...|++++|++.+++..+.+..++ ...|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 345566677777888888888888888776432 555777777788888888888888888877331111 22367777
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHH
Q 018782 122 HAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVN 201 (350)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 201 (350)
..+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.... +...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888776654 345567777777788888888888888777766322 4555655552333445777
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC---HhHHHHHHHHHHhcC-CCCC------HHHHHHHHHHHhhccCcH
Q 018782 202 MALRLITRMTKENVMPDRHTYNMVLKLLVRVGR---FDRATEVWESMEKRG-FYPS------VSTYSVMVHGLCKKKGKL 271 (350)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~p~------~~~~~~ll~~~~~~~~~~ 271 (350)
+|...++.+.+... .+...+..+..++...|+ +++|...++++.+.. -.|+ ...+..+...+... |++
T Consensus 160 ~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 237 (272)
T 3u4t_A 160 KADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN-RDK 237 (272)
T ss_dssp HHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc-CCH
Confidence 77777777776532 335566666777777776 666777777666431 1122 13344444444444 777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 018782 272 EEACKYFEMMVDEGIPPYSSTVEMLRNR 299 (350)
Q Consensus 272 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (350)
++|.+.|+++.+.. |.+......+...
T Consensus 238 ~~A~~~~~~al~~~-p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 238 VKADAAWKNILALD-PTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHC--
T ss_pred HHHHHHHHHHHhcC-ccHHHHHHHhhhh
Confidence 77777777776665 4455555444433
No 41
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.76 E-value=7.2e-15 Score=117.94 Aligned_cols=222 Identities=11% Similarity=-0.021 Sum_probs=107.7
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGD----VGELSEARKLFDEMLERKCPVDILAHNSL 85 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 85 (350)
+.++..+...+...|++++|.+.|++... +.++..+..+...+.. .+++++|...|++..+.+ +...+..+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 34444445555555555555555555443 2334445555555555 555555555555555443 44455555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHhhCCCCccHHHHHHHHH
Q 018782 86 LEAMCK----AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE----ANDIHSVFRVLDSMKRYNLVPNVFTYNCIIR 157 (350)
Q Consensus 86 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (350)
...+.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 555555 555555555555555442 34444445555555 555555555555554433 3334444444
Q ss_pred HHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----ccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 018782 158 KLCK----NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD----RAEVNMALRLITRMTKENVMPDRHTYNMVLKLL 229 (350)
Q Consensus 158 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 229 (350)
.|.. .+++++|...+++..+.+ +...+..+...+.. .+++++|...++...+.+. ...+..+..+|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHH
Confidence 4444 455555555555544432 23344444444444 4455555555554444321 33344444444
Q ss_pred HH----cCCHhHHHHHHHHHHhc
Q 018782 230 VR----VGRFDRATEVWESMEKR 248 (350)
Q Consensus 230 ~~----~~~~~~a~~~~~~~~~~ 248 (350)
.. .+++++|...|++..+.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHc
Confidence 44 44455555555444443
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.76 E-value=1.4e-15 Score=120.48 Aligned_cols=211 Identities=14% Similarity=0.094 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 018782 44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA 123 (350)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (350)
+..+..+...+...|++++|.+.|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5677888888888899999999998888764 3367888888888888999999999998888763 3466778888888
Q ss_pred HHhcCCHhHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHH
Q 018782 124 FCEANDIHSVFRVLDSMKRYNLVP-NVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNM 202 (350)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 202 (350)
+...|++++|..+++++.+.+..| +...+..+..++...|++++|...++++.+.... +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 888999999999998887732223 5667788888888999999999999988877533 57788888888889999999
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHH
Q 018782 203 ALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVM 260 (350)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l 260 (350)
|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+. .|+...+..+
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~ 248 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence 999999888754 356677888888888999999999999998875 4554444433
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.76 E-value=2.1e-15 Score=117.13 Aligned_cols=202 Identities=12% Similarity=0.001 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 018782 43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIH 122 (350)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 122 (350)
++..+..+...+...|++++|.+.|+++.+.. +.+...+..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34444555555555555555555555554442 2234455555555555555555555555555432 223444555555
Q ss_pred HHHhc-CCHhHHHHHHHHHhhCCC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCH
Q 018782 123 AFCEA-NDIHSVFRVLDSMKRYNL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEV 200 (350)
Q Consensus 123 ~~~~~-~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 200 (350)
.+... |++++|...++++.+.+. +.+...+..+..++...|++++|...++++.+.... +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 55555 555555555555544211 112344555555555556666666666555554322 345555555556666666
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782 201 NMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEK 247 (350)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 247 (350)
++|...++.+.......+...+..+...+...|+.+.|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66666666655542213444455555555666666666666666554
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.75 E-value=2.4e-15 Score=116.86 Aligned_cols=202 Identities=9% Similarity=-0.048 Sum_probs=119.9
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA 88 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (350)
++..+..+...+...|++++|.+.|+.+....|.+...+..+..++...|++++|.+.++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 344555556666666666666666666655555556666666666666666666666666666553 2255566666666
Q ss_pred HHhc-CCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHH
Q 018782 89 MCKA-GNIDEAHGMLREMRSIGAEP-DAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVE 166 (350)
Q Consensus 89 ~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (350)
+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+..++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 6666 66666666666666522122 23455556666666666666666666665543 234555666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHh
Q 018782 167 EAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTK 212 (350)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 212 (350)
+|...++++.+.....+...+..+...+...|+.+.+..+++.+..
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666666553312455555555555666666666666666554
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=1.3e-15 Score=127.21 Aligned_cols=251 Identities=10% Similarity=0.043 Sum_probs=193.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 018782 43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGN-IDEAHGMLREMRSIGAEPDAFSYSIFI 121 (350)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 121 (350)
+...|..+..++...|++++|++.++++++.... +..+|+.+..++...|+ +++|+..|+++++.. +-+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 4567888888888999999999999999887544 78889999999999996 999999999998864 34677888899
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-ccCH
Q 018782 122 HAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD-RAEV 200 (350)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~ 200 (350)
.++...|++++|+..|+++.+.. +-+..+|..+..++...|++++|+..++++++..+. +...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999998865 457888888999999999999999999999988655 77888888888887 5554
Q ss_pred HHH-----HHHHHHHHhCCCCCChhHHHHHHHHHHHcC--CHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhcc-----
Q 018782 201 NMA-----LRLITRMTKENVMPDRHTYNMVLKLLVRVG--RFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKK----- 268 (350)
Q Consensus 201 ~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----- 268 (350)
++| +..+++.+.... -+...|..+..++...| ++++|.+.+.++ +. -..+...+..+...+....
T Consensus 252 ~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhccccc
Confidence 666 477888777543 35667888888888777 588888888887 32 2334566666666665541
Q ss_pred --C-cHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHH
Q 018782 269 --G-KLEEACKYFEMM-VDEGIPPYSSTVEMLRNRLV 301 (350)
Q Consensus 269 --~-~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 301 (350)
+ ..++|+++++++ .+.+ |.....|..+...+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 2 358888888888 6665 555566666655544
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.75 E-value=1.2e-16 Score=128.32 Aligned_cols=246 Identities=13% Similarity=0.046 Sum_probs=161.6
Q ss_pred HccCChHHHHHHHHHhhhcC----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018782 21 CKRKHVKVAHQFFDNAKHEF----TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNID 96 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 96 (350)
...|++++|+..|+.+.... +.+..++..+..++...|++++|...|+++.+... .+..+|..+..++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHH
Confidence 44678888888888876532 23567778888888888888888888888877643 36778888888888888888
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018782 97 EAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMI 176 (350)
Q Consensus 97 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 176 (350)
+|...|+++.+.. +.+...+..+..++...|++++|...++++.+.. |+.......+..+...|++++|...+++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888888887753 3356677778888888888888888888877653 443344444445566678888888887766
Q ss_pred HcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCC---ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC
Q 018782 177 ERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMP---DRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPS 253 (350)
Q Consensus 177 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 253 (350)
.... ++...+. ++..+...++.++|...+.......... +...+..+..++...|++++|...|+++.+. .|+
T Consensus 172 ~~~~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 247 (275)
T 1xnf_A 172 EKSD-KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 247 (275)
T ss_dssp HHSC-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred hcCC-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cch
Confidence 6532 2333333 5555666677777777777765532110 1356667777777777777777777777764 332
Q ss_pred -HHHHHHHHHHHhhccCcHHHHHHHH
Q 018782 254 -VSTYSVMVHGLCKKKGKLEEACKYF 278 (350)
Q Consensus 254 -~~~~~~ll~~~~~~~~~~~~a~~~~ 278 (350)
...+ ..++... |++++|++.+
T Consensus 248 ~~~~~---~~~~~~l-~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFVEH---RYALLEL-SLLGQDQDDL 269 (275)
T ss_dssp TCHHH---HHHHHHH-HHHHHC----
T ss_pred hHHHH---HHHHHHH-HHHHhhHHHH
Confidence 2222 2223333 6666666554
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.74 E-value=4.3e-15 Score=117.68 Aligned_cols=202 Identities=14% Similarity=0.032 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 018782 79 ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRK 158 (350)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (350)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4455666666666677777777776666542 2345566666666666777777777776665543 3355566666666
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhH
Q 018782 159 LCKNEKVEEAYQLLDEMIERGANP-DEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDR 237 (350)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 237 (350)
+...|++++|...++++.+.+..| +...+..+...+...|++++|...++.+.+... .+...+..+..++...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 666777777777776666522223 344555566666666777777777766665432 345566666666667777777
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782 238 ATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG 285 (350)
Q Consensus 238 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 285 (350)
|...++++.+.. ..+...+..+...+... |++++|.+.++++.+..
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVF-EDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHC
Confidence 777776666542 22344444444444433 67777777777666654
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.74 E-value=4.3e-16 Score=122.71 Aligned_cols=202 Identities=12% Similarity=0.086 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 018782 42 PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFI 121 (350)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 121 (350)
..+..|..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|+..++++.+.. +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 344555556666666666666666666666542 2255666666666666666666666666666542 23455566666
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHH
Q 018782 122 HAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVN 201 (350)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 201 (350)
..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666665543 335556666666666677777777777666665332 5556666666667777777
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782 202 MALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKR 248 (350)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 248 (350)
+|...++.+.+... .+..++..+..++...|++++|...++++.+.
T Consensus 177 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 177 EALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77777777666432 34556667777777777777777777777664
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.73 E-value=1.2e-15 Score=122.54 Aligned_cols=248 Identities=10% Similarity=-0.003 Sum_probs=186.7
Q ss_pred hccCCHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh
Q 018782 55 GDVGELSEARKLFDEMLERKC---PVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIH 131 (350)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 131 (350)
...|++++|+..|+++.+... +.+..++..+..++...|++++|...|+++.+.. +.+..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 456889999999999988632 1246778889999999999999999999998864 346788999999999999999
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHH
Q 018782 132 SVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMT 211 (350)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 211 (350)
+|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. |+.......+..+...|++++|...++...
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999998864 4467888999999999999999999999998874 344444445555677799999999998877
Q ss_pred hCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC--C-CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC
Q 018782 212 KENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFY--P-SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPP 288 (350)
Q Consensus 212 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~ 288 (350)
... +++...+ .++..+...++.++|...++...+.... | +...+..+...+... |++++|...|+++.... |.
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~-p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSL-GDLDSATALFKLAVANN-VH 247 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTC-CT
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCC-ch
Confidence 653 2344444 4677777888889999999888754211 0 145666677666655 99999999999998775 33
Q ss_pred CHHHHHHHHHHHHcCCChhHHHHHH
Q 018782 289 YSSTVEMLRNRLVGLGFLDIIEILA 313 (350)
Q Consensus 289 ~~~~~~~l~~~~~~~g~~~~a~~~~ 313 (350)
+... ...++...|++++|.+.+
T Consensus 248 ~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCHH---HHHHHHHHHHHHHC----
T ss_pred hHHH---HHHHHHHHHHHHhhHHHH
Confidence 4333 355677778888887765
No 50
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=5.2e-14 Score=122.06 Aligned_cols=309 Identities=12% Similarity=0.007 Sum_probs=219.4
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhh---------cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc-----C
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKH---------EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER-----K 74 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 74 (350)
....|+.+...+...|++++|++.|++... ..+....+|+.+..+|...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 455688899999999999999999988632 13445678999999999999999999999987642 1
Q ss_pred --CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH---HHhcCCHhHHHHHHHHHhhCCCCc
Q 018782 75 --CPVDILAHNSLLEAMCKA--GNIDEAHGMLREMRSIGAEPDAFSYSIFIHA---FCEANDIHSVFRVLDSMKRYNLVP 147 (350)
Q Consensus 75 --~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~ 147 (350)
......++..+..++... +++++|++.|++..+.. +-+...+..+..+ +...++.++|+..+++..+.. +.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 112456777666666554 56899999999999863 2244455555444 345677888999999887764 34
Q ss_pred cHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHH
Q 018782 148 NVFTYNCIIRKLCK----NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYN 223 (350)
Q Consensus 148 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 223 (350)
+..++..+...+.. .|++++|...+++....... +..++..+...+...|++++|...+++..+..+ .+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHH
Confidence 56666666554443 56788999999999887544 678888999999999999999999999988643 3556676
Q ss_pred HHHHHHHHc-------------------CCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782 224 MVLKLLVRV-------------------GRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE 284 (350)
Q Consensus 224 ~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 284 (350)
.+..+|... +.++.|...++...+... .+...+..+...+... |++++|...|++..+.
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~-~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALA-DQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHT-TCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHh-ccHHHHHHHHHHHHhc
Confidence 666665432 236678888888776522 2334555666666655 9999999999999987
Q ss_pred CCCCCHH--HHHHHHH-HHHcCCChhHHHHHHHHhhccCCCc
Q 018782 285 GIPPYSS--TVEMLRN-RLVGLGFLDIIEILADKMERSTSCT 323 (350)
Q Consensus 285 ~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~ 323 (350)
...+... .+..+.. .....|++++|+..+++..+..+..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 6333221 2333332 3457899999999999887655443
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=2.3e-15 Score=118.53 Aligned_cols=206 Identities=12% Similarity=0.065 Sum_probs=111.1
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 018782 115 FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYH 194 (350)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 194 (350)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHH
Confidence 344445555555555555555555555432 234555555555555666666666666655554322 455555555566
Q ss_pred hcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHH
Q 018782 195 CDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEA 274 (350)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a 274 (350)
...|++++|.+.++.+.+.. +.+...+..+..++...|++++|...++++.+.. ..+...+..+...+... |++++|
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-~~~~~A 178 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANE-GMLDEA 178 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH-TCCHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHc-CCHHHH
Confidence 66666666666666655543 2344556666666666666666666666666542 12444555555555444 677777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHH
Q 018782 275 CKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQE 326 (350)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 326 (350)
...++++.+.. +.+..++..+..++...|++++|...++++.+..+..+..
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 229 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHH
Confidence 77777666654 4556667777777777777777777777776666555543
No 52
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=4.4e-13 Score=117.99 Aligned_cols=218 Identities=11% Similarity=0.072 Sum_probs=162.8
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHh-------cCCHh-------HHHHHHHHHhhCCCCccHHHHHHHHHHHHccC
Q 018782 98 AHGMLREMRSIGAEPDAFSYSIFIHAFCE-------ANDIH-------SVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNE 163 (350)
Q Consensus 98 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 163 (350)
+..+|++.... .+.+...|..++..+.. .|+++ +|..+|++..+.-.+.+...|..++..+.+.|
T Consensus 257 a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 257 VMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 33444444443 12345566666666664 68877 89999999986323456889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHH-HHHcCCHhHHHHH
Q 018782 164 KVEEAYQLLDEMIERGANPD-EWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKL-LVRVGRFDRATEV 241 (350)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~ 241 (350)
++++|..+|+++.+.... + ...|..++..+.+.|+.+.|.++|+...+... .+...|...+.. +...|+.++|..+
T Consensus 336 ~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp CHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHH
Confidence 999999999999986322 3 35788888888899999999999999988632 233333332222 3468999999999
Q ss_pred HHHHHhcCCCC-CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782 242 WESMEKRGFYP-SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG-IPP--YSSTVEMLRNRLVGLGFLDIIEILADKME 317 (350)
Q Consensus 242 ~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 317 (350)
|+...+. .| +...|..++..+... |+.++|..+|++....+ ..| ....|...+......|+.+.+..+.+++.
T Consensus 414 ~e~al~~--~p~~~~~~~~~~~~~~~~-g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 414 FELGLKK--YGDIPEYVLAYIDYLSHL-NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHH--HTTCHHHHHHHHHHHTTT-TCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHH--CCCCHHHHHHHHHHHHhC-CCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998875 34 567777777766555 99999999999999874 122 24478888888888999999999999987
Q ss_pred ccCC
Q 018782 318 RSTS 321 (350)
Q Consensus 318 ~~~~ 321 (350)
+.-+
T Consensus 491 ~~~p 494 (530)
T 2ooe_A 491 TAFR 494 (530)
T ss_dssp HHTH
T ss_pred HHCc
Confidence 7544
No 53
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.70 E-value=9.3e-14 Score=113.46 Aligned_cols=218 Identities=11% Similarity=0.101 Sum_probs=142.1
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHhc-------cCCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782 27 KVAHQFFDNAKHEFTPTVKTYSILVRGLGD-------VGEL-------SEARKLFDEMLERKCPVDILAHNSLLEAMCKA 92 (350)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (350)
++|...|+++....|.++..|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 567778877777667777777777777653 4665 77777777777631223566777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-Hh-hHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHH-ccCCHHHHH
Q 018782 93 GNIDEAHGMLREMRSIGAEPD-AF-SYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLC-KNEKVEEAY 169 (350)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~ 169 (350)
|++++|..+|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|.
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 7888888888777764 333 32 67777777777777777777777776654 234444443333222 257777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC-CCC--ChhHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 018782 170 QLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN-VMP--DRHTYNMVLKLLVRVGRFDRATEVWESME 246 (350)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 246 (350)
.+|++..+..+. +...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777665332 56666666666677777777777777776642 233 34456666666666777777777777766
Q ss_pred hc
Q 018782 247 KR 248 (350)
Q Consensus 247 ~~ 248 (350)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.70 E-value=9.7e-16 Score=130.13 Aligned_cols=300 Identities=13% Similarity=0.055 Sum_probs=222.0
Q ss_pred CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhc----CCC-C
Q 018782 7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPT----VKTYSILVRGLGDVGELSEARKLFDEMLER----KCP-V 77 (350)
Q Consensus 7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~ 77 (350)
.+....+......+...|++++|...|+++....+.+ ..++..+...+...|++++|...+++.... +.+ .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3455566777888999999999999999987754555 367888999999999999999999987543 111 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHhcCC--------------------HhH
Q 018782 78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAE-PD----AFSYSIFIHAFCEAND--------------------IHS 132 (350)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~ 132 (350)
...++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2557888899999999999999999988753110 11 3478888899999999 999
Q ss_pred HHHHHHHHhhC----CC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhcccCHHH
Q 018782 133 VFRVLDSMKRY----NL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-PD----EWSYNAILAYHCDRAEVNM 202 (350)
Q Consensus 133 a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~ 202 (350)
|...+++..+. +. +....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99998876442 11 122457788889999999999999999988754111 12 2367788888999999999
Q ss_pred HHHHHHHHHhCCCC-CC----hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHhhccCcHH
Q 018782 203 ALRLITRMTKENVM-PD----RHTYNMVLKLLVRVGRFDRATEVWESMEKRGF-YPS----VSTYSVMVHGLCKKKGKLE 272 (350)
Q Consensus 203 a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~~~~ 272 (350)
|...+++....... ++ ..++..+...+...|++++|...+++..+... .++ ...+..+...+... |+++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~ 324 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL-GNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc-CCHH
Confidence 99999987653111 11 45778889999999999999999998875311 112 34556666666655 9999
Q ss_pred HHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHcCCChh
Q 018782 273 EACKYFEMMVDE----GI-PPYSSTVEMLRNRLVGLGFLD 307 (350)
Q Consensus 273 ~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~ 307 (350)
+|...+++..+. +. +....++..+...+...|+..
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 999999987643 21 123456777888888777664
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.68 E-value=1.2e-15 Score=129.89 Aligned_cols=275 Identities=10% Similarity=0.032 Sum_probs=175.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCC
Q 018782 43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDI----LAHNSLLEAMCKAGNIDEAHGMLREMRSI----GA-EPD 113 (350)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~ 113 (350)
....+..+...+...|++++|...|+++.+.+.. +. .++..+..++...|++++|...+++..+. +. +..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3444556666777777777777777777766322 32 45667777777777777777777776542 11 123
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----C-CCccHHHHHHHHHHHHccCC-----------------HHHHHHH
Q 018782 114 AFSYSIFIHAFCEANDIHSVFRVLDSMKRY----N-LVPNVFTYNCIIRKLCKNEK-----------------VEEAYQL 171 (350)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~ 171 (350)
..++..+...+...|++++|...+++..+. + .+....++..+...+...|+ +++|...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 346666777777777777777777766442 1 11234566677777777777 7777777
Q ss_pred HHHHHHc----CCC-CCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCC-CC----hhHHHHHHHHHHHcCCHhHHHHH
Q 018782 172 LDEMIER----GAN-PDEWSYNAILAYHCDRAEVNMALRLITRMTKENVM-PD----RHTYNMVLKLLVRVGRFDRATEV 241 (350)
Q Consensus 172 ~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~ 241 (350)
+++..+. +.. ....++..+...+...|++++|...+++..+.... ++ ...+..+..++...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 7765432 111 12345666777777788888888887776553110 11 22667777888888888888888
Q ss_pred HHHHHhcCC-CCC----HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHcCCChhHHHH
Q 018782 242 WESMEKRGF-YPS----VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG-----IPPYSSTVEMLRNRLVGLGFLDIIEI 311 (350)
Q Consensus 242 ~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~ 311 (350)
+++..+... ..+ ...+..+...+... |++++|...+++..... ......++..+..++...|++++|..
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLL-HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 877664310 011 34555566665555 88888888888776431 01124467778888888888888888
Q ss_pred HHHHhhcc
Q 018782 312 LADKMERS 319 (350)
Q Consensus 312 ~~~~~~~~ 319 (350)
.+++..+.
T Consensus 365 ~~~~al~~ 372 (411)
T 4a1s_A 365 YAEQHLQL 372 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.67 E-value=5.3e-15 Score=125.95 Aligned_cols=274 Identities=13% Similarity=0.053 Sum_probs=211.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhc----C-CCCCHHH
Q 018782 11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTV----KTYSILVRGLGDVGELSEARKLFDEMLER----K-CPVDILA 81 (350)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 81 (350)
..+..+...+...|++++|...|+++....+.+. .++..+..++...|++++|...+++..+. + .+....+
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3445566788899999999999999877555554 57889999999999999999999998753 1 1224567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHhcCC-----------------HhHHHHHHHH
Q 018782 82 HNSLLEAMCKAGNIDEAHGMLREMRSIG-----AEPDAFSYSIFIHAFCEAND-----------------IHSVFRVLDS 139 (350)
Q Consensus 82 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~ 139 (350)
+..+...+...|++++|...+++..+.. .+....++..+...+...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 8889999999999999999999987531 11234478888999999999 9999999988
Q ss_pred HhhC----CC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhcccCHHHHHHHHHH
Q 018782 140 MKRY----NL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-PD----EWSYNAILAYHCDRAEVNMALRLITR 209 (350)
Q Consensus 140 ~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~ 209 (350)
..+. +. +....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 7542 11 123457888889999999999999999998875221 12 22677888899999999999999999
Q ss_pred HHhCCCC-C----ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHhhccCcHHHHHHHHH
Q 018782 210 MTKENVM-P----DRHTYNMVLKLLVRVGRFDRATEVWESMEKR----GFYP-SVSTYSVMVHGLCKKKGKLEEACKYFE 279 (350)
Q Consensus 210 ~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~ 279 (350)
....... . ...++..+..++...|++++|...+++..+. +..+ ....+..+...+... |++++|...++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~ 367 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI-GGHERALKYAE 367 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh-ccHHHHHHHHH
Confidence 8775221 1 1457788999999999999999999998753 1111 133556666666655 99999999999
Q ss_pred HHHhCC
Q 018782 280 MMVDEG 285 (350)
Q Consensus 280 ~~~~~~ 285 (350)
+..+..
T Consensus 368 ~al~~~ 373 (411)
T 4a1s_A 368 QHLQLA 373 (411)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998875
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.66 E-value=4e-15 Score=122.78 Aligned_cols=276 Identities=15% Similarity=0.094 Sum_probs=136.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHhhhcCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhc----CCC-CCHHHH
Q 018782 12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPT----VKTYSILVRGLGDVGELSEARKLFDEMLER----KCP-VDILAH 82 (350)
Q Consensus 12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 82 (350)
.+......+...|++++|...|+++....+.+ ...+..+...+...|++++|.+.+++..+. +.+ ....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34444556667777777777777765543433 355666677777777777777777665432 111 124455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHhcCC--------------------HhHHHHHH
Q 018782 83 NSLLEAMCKAGNIDEAHGMLREMRSIGA-EPD----AFSYSIFIHAFCEAND--------------------IHSVFRVL 137 (350)
Q Consensus 83 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~~ 137 (350)
..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 6666666667777777766666543210 011 2245555555555565 55555555
Q ss_pred HHHhhC----CC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcccCHHHHHHHHHHHH
Q 018782 138 DSMKRY----NL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-PDEWSYNAILAYHCDRAEVNMALRLITRMT 211 (350)
Q Consensus 138 ~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 211 (350)
++.... +. +....++..+...+...|++++|...+++..+.... ++.
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--------------------------- 219 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--------------------------- 219 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH---------------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh---------------------------
Confidence 443221 10 011223444444444455555555544444321000 000
Q ss_pred hCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC-
Q 018782 212 KENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGF-YPS----VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG- 285 (350)
Q Consensus 212 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~- 285 (350)
.....++..+...+...|++++|...+++..+... .++ ...+..+...+... |++++|...++++.+..
T Consensus 220 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 220 ----AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp ----HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHH
Confidence 00112444555555555555555555555442100 001 22333344444333 56666666665554321
Q ss_pred ----CCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782 286 ----IPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 286 ----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
......++..+...+.+.|++++|...+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0111335556666666666666666666665543
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.66 E-value=5.1e-14 Score=105.82 Aligned_cols=167 Identities=11% Similarity=0.025 Sum_probs=98.5
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA 88 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (350)
++.+|..+...+...|++++|++.|++.....|.++.++..+..++...|++++|...+......... +...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 34456666666666666666666666665555556666666666666666666666666666554322 45555555566
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHH
Q 018782 89 MCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEA 168 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 168 (350)
+...++++.|...+.+..+.. +.+...+..+..++...|++++|+..|++..+.. +.+..++..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 666666666666666665542 2344555556666666666666666666655543 33455555666666666666666
Q ss_pred HHHHHHHHHc
Q 018782 169 YQLLDEMIER 178 (350)
Q Consensus 169 ~~~~~~~~~~ 178 (350)
...|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 6666665554
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.66 E-value=1.7e-14 Score=124.88 Aligned_cols=216 Identities=11% Similarity=-0.002 Sum_probs=165.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 018782 59 ELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI-DEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVL 137 (350)
Q Consensus 59 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 137 (350)
.++++++.+++.... .+.+...+..+..++...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 466777777776655 234778888888888888888 88888888888753 335678888888888888888888888
Q ss_pred HHHhhCCCCccHHHHHHHHHHHHcc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------cCH
Q 018782 138 DSMKRYNLVPNVFTYNCIIRKLCKN---------EKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDR--------AEV 200 (350)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--------~~~ 200 (350)
++..+.. |+...+..+..++... |++++|...+++..+.... +...|..+..++... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence 8888754 6677888888888888 8888898888888887544 677788888888877 888
Q ss_pred HHHHHHHHHHHhCCCC--CChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHH
Q 018782 201 NMALRLITRMTKENVM--PDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYF 278 (350)
Q Consensus 201 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~ 278 (350)
++|...|++..+.... .+...|..+..+|...|++++|...|++..+... .+...+..+...+... |++++|++.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~l-g~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFL-SRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 9999988888875321 3677888888888889999999999988887522 2344555555555544 8888888776
Q ss_pred HHH
Q 018782 279 EMM 281 (350)
Q Consensus 279 ~~~ 281 (350)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 655
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.65 E-value=1.2e-14 Score=123.32 Aligned_cols=276 Identities=12% Similarity=0.056 Sum_probs=209.9
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC
Q 018782 41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD----ILAHNSLLEAMCKAGNIDEAHGMLREMRSI----GAEP 112 (350)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~ 112 (350)
......+......+...|++++|...|++..+.+.. + ..++..+...+...|++++|...+++..+. +..|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 456667788899999999999999999999987433 3 357888999999999999999999987642 2122
Q ss_pred -CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC----C-CccHHHHHHHHHHHHccCC--------------------HH
Q 018782 113 -DAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN----L-VPNVFTYNCIIRKLCKNEK--------------------VE 166 (350)
Q Consensus 113 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~--------------------~~ 166 (350)
...++..+...+...|++++|...+++..+.. - .....++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 24577888899999999999999999876531 0 1124478888899999999 99
Q ss_pred HHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCC-CC----hhHHHHHHHHHHHcCCHh
Q 018782 167 EAYQLLDEMIER----GANP-DEWSYNAILAYHCDRAEVNMALRLITRMTKENVM-PD----RHTYNMVLKLLVRVGRFD 236 (350)
Q Consensus 167 ~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~ 236 (350)
+|...+++.... +..| ...++..+...+...|++++|...+++..+.... ++ ..++..+..++...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999887643 1111 1346777888899999999999999987654111 11 237888999999999999
Q ss_pred HHHHHHHHHHhcCC-CCC----HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHcCCCh
Q 018782 237 RATEVWESMEKRGF-YPS----VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGI-----PPYSSTVEMLRNRLVGLGFL 306 (350)
Q Consensus 237 ~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~ 306 (350)
+|...+++..+... .++ ..++..+...+... |++++|...+++..+... +....++..+...+...|++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 99999998874310 112 34566666666655 999999999999875421 11256788899999999999
Q ss_pred hHHHHHHHHhhc
Q 018782 307 DIIEILADKMER 318 (350)
Q Consensus 307 ~~a~~~~~~~~~ 318 (350)
++|...+++..+
T Consensus 324 ~~A~~~~~~al~ 335 (406)
T 3sf4_A 324 DQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 61
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.65 E-value=5e-14 Score=118.79 Aligned_cols=294 Identities=9% Similarity=-0.005 Sum_probs=205.5
Q ss_pred HHccCChHHHHHHHHHhhh---cCCCC--HHHHHHHHHH--HhccCCHHHHH-----------HHHHHHHhcCCCCCHH-
Q 018782 20 LCKRKHVKVAHQFFDNAKH---EFTPT--VKTYSILVRG--LGDVGELSEAR-----------KLFDEMLERKCPVDIL- 80 (350)
Q Consensus 20 ~~~~g~~~~a~~~~~~~~~---~~~~~--~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~~- 80 (350)
+.+.+++++|..+++.+.. ....+ ...|..++.. ....+.++.+. +.++.+.... .+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 4579999999999999865 22233 3333443332 22234444444 6666665431 1112
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----C--
Q 018782 81 -----AHNSLLEAMCKAGNIDEAHGMLREMRSI----GAEP-DAFSYSIFIHAFCEANDIHSVFRVLDSMKRY----N-- 144 (350)
Q Consensus 81 -----~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-- 144 (350)
.+......+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+++..+. +
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 1223566788899999999999999864 1111 2457888999999999999999999987542 1
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhcccCHHHHHHHHHHHHh-----CC
Q 018782 145 LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-PD----EWSYNAILAYHCDRAEVNMALRLITRMTK-----EN 214 (350)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~ 214 (350)
.+....++..+..+|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+ ..
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 0112457888899999999999999999988754211 12 24678888999999999999999999877 33
Q ss_pred CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcC---CCCC-HHHHHHHHHHHhhccCc---HHHHHHHHHHHHhCCCC
Q 018782 215 VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRG---FYPS-VSTYSVMVHGLCKKKGK---LEEACKYFEMMVDEGIP 287 (350)
Q Consensus 215 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~p~-~~~~~~ll~~~~~~~~~---~~~a~~~~~~~~~~~~~ 287 (350)
.+....++..+..++...|++++|...+++..+.. -.|. ...+..+-..+. ..|+ +++|+.++++. ...+
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~al~~~~~~--~~~~ 336 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYL-SGPDEEAIQGFFDFLESK--MLYA 336 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-SSCCHHHHHHHHHHHHHT--TCHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHC--cCHH
Confidence 13345678899999999999999999999887531 0122 222344444444 4477 77777777766 2222
Q ss_pred CCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782 288 PYSSTVEMLRNRLVGLGFLDIIEILADKMER 318 (350)
Q Consensus 288 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 318 (350)
.....+..+...|...|++++|...+++..+
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455778899999999999999999998764
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.64 E-value=1.4e-13 Score=103.47 Aligned_cols=166 Identities=13% Similarity=0.087 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 018782 43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIH 122 (350)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 122 (350)
++.+|..+..++...|++++|++.|++..+..+. +..++..+..++...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4555666666666666666666666666655322 55566666666666666666666666665542 223444555555
Q ss_pred HHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHH
Q 018782 123 AFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNM 202 (350)
Q Consensus 123 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 202 (350)
.+...++++.+...+.+..+.. +.+...+..+..++.+.|++++|++.|++..+..+. +..+|..+..++...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 5555666666666665555443 234455555555555566666666666555554322 44555555555555555555
Q ss_pred HHHHHHHHHh
Q 018782 203 ALRLITRMTK 212 (350)
Q Consensus 203 a~~~~~~~~~ 212 (350)
|.+.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555554
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.64 E-value=1.4e-14 Score=119.53 Aligned_cols=244 Identities=11% Similarity=0.026 Sum_probs=139.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhh
Q 018782 46 TYSILVRGLGDVGELSEARKLFDEMLERKCPVD----ILAHNSLLEAMCKAGNIDEAHGMLREMRSI----GAE-PDAFS 116 (350)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 116 (350)
.+......+...|++++|...|+++.+.... + ...+..+...+...|++++|.+.+++..+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 3444555666667777777777776665322 2 245556666666666666666666665432 101 11234
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHhhCCC-Ccc----HHHHHHHHHHHHccCC-------------HHHHHHHHHHHHHc
Q 018782 117 YSIFIHAFCEANDIHSVFRVLDSMKRYNL-VPN----VFTYNCIIRKLCKNEK-------------VEEAYQLLDEMIER 178 (350)
Q Consensus 117 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~-------------~~~a~~~~~~~~~~ 178 (350)
+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ .+++...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~------- 158 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA------- 158 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH-------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH-------
Confidence 44555555555555555555555432100 001 1233344444444444 0000000
Q ss_pred CCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC----C-CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC-CC
Q 018782 179 GANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE----N-VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGF-YP 252 (350)
Q Consensus 179 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~p 252 (350)
+++|...++..... + .......+..+...+...|++++|...+++..+... .+
T Consensus 159 ---------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 159 ---------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 45555444443221 1 111234677788888888999999988888764210 11
Q ss_pred C----HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782 253 S----VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGI-PP----YSSTVEMLRNRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 253 ~----~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
+ ...+..+...+... |++++|...+++...... .. ...++..+...+...|++++|...+++....
T Consensus 218 ~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFL-GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2 23566666666655 999999999998865420 01 1567888999999999999999999987653
No 64
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.63 E-value=1.1e-12 Score=121.76 Aligned_cols=257 Identities=14% Similarity=0.175 Sum_probs=143.3
Q ss_pred HHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018782 15 QLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGN 94 (350)
Q Consensus 15 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (350)
.+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. ++.+|..+..++...|+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence 345666777788888887777531 1111122211 4556666666665441 45666666666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHH
Q 018782 95 IDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDE 174 (350)
Q Consensus 95 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 174 (350)
+++|++.|.+. -|...|..++.++.+.|++++|.+++....+.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 66666666443 345556666666666666666666666655543 23223334666666666665433322
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH
Q 018782 175 MIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSV 254 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 254 (350)
. .++...|..+...|...|++++|..+|..+ ..|..+..++.+.|++++|.+.+++.. +.
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~ 1250 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ST 1250 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CH
Confidence 1 234445555666666666666666666653 256666666666666666666666552 33
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccC
Q 018782 255 STYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERST 320 (350)
Q Consensus 255 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 320 (350)
.+|..+-.++... |++..|...... +..++..+..++..|.+.|.+++|..+++.....+
T Consensus 1251 ~aWkev~~acve~-~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1251 RTWKEVCFACVDG-KEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HHHHHHHHHHhhh-hHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 4454444444333 555555443331 23345555566666666666666666665555443
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=2.6e-12 Score=104.89 Aligned_cols=237 Identities=10% Similarity=0.047 Sum_probs=143.8
Q ss_pred CHHHHHHHHHHHhcc----CCH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHH
Q 018782 43 TVKTYSILVRGLGDV----GEL----SEARKLFDEMLERKCPVDILAHNSLLEAMCK-------AGNI-------DEAHG 100 (350)
Q Consensus 43 ~~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~ 100 (350)
+...|...+....+. ++. ++|...|++..... +.++..|..++..+.. .|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 345566666655443 233 56777777777653 3467777777766653 4664 77777
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc-HH-HHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 018782 101 MLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN-VF-TYNCIIRKLCKNEKVEEAYQLLDEMIER 178 (350)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (350)
+|++..+.-.+-+...|..++..+...|++++|..+|+++.+.. |+ .. +|..++..+.+.|++++|..+|++..+.
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77777763112344567777777777777777777777776642 32 32 6677777777777777777777777665
Q ss_pred CCCCCHHHHHHHHHHHh-cccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcC-CCC--CH
Q 018782 179 GANPDEWSYNAILAYHC-DRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRG-FYP--SV 254 (350)
Q Consensus 179 ~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~p--~~ 254 (350)
... +...|........ ..|+++.|..+|+...+..+ .+...|..++..+.+.|++++|..+|++..... +.| ..
T Consensus 164 ~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 164 ART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp TTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred CCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 332 3334433322211 25677777777777665432 345666666667777777777777777776642 233 24
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782 255 STYSVMVHGLCKKKGKLEEACKYFEMMVDEG 285 (350)
Q Consensus 255 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 285 (350)
..|..++...... |+.+.|..+++++.+..
T Consensus 242 ~l~~~~~~~~~~~-g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 242 EIWARFLAFESNI-GDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHHH-SCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHc
Confidence 4555555544333 77777777777766653
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=5.9e-15 Score=120.55 Aligned_cols=169 Identities=17% Similarity=0.123 Sum_probs=108.5
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhh--------cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc------C
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKH--------EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER------K 74 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 74 (350)
+..++..+...+...|++++|..+|+++.. ..+....++..+..++...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 445566677777777777777777777644 23344566777777777777777777777776643 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC---
Q 018782 75 -CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI------GA-EPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY--- 143 (350)
Q Consensus 75 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 143 (350)
.+....++..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|..+++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223456667777777777777777777777653 11 122345666667777777777777777766543
Q ss_pred ---C-CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018782 144 ---N-LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIE 177 (350)
Q Consensus 144 ---~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (350)
+ .+....++..+..++...|++++|...++++.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 122334566666777777777777777776654
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.61 E-value=1.2e-13 Score=119.62 Aligned_cols=215 Identities=13% Similarity=0.036 Sum_probs=185.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH-hHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 018782 94 NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDI-HSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLL 172 (350)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 172 (350)
.+++++..++..... .+.+...+..+...+...|++ ++|+..|++..+.. +.+..+|..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 356777777776654 245778899999999999999 99999999998865 446889999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcc---------cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc--------CCH
Q 018782 173 DEMIERGANPDEWSYNAILAYHCDR---------AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRV--------GRF 235 (350)
Q Consensus 173 ~~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~ 235 (350)
++..+.. |+...+..+...+... |++++|...+++..+... .+...|..+..+|... |++
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9999874 6678889999999999 999999999999998653 4678899999999998 999
Q ss_pred hHHHHHHHHHHhcCCCC----CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHH
Q 018782 236 DRATEVWESMEKRGFYP----SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEI 311 (350)
Q Consensus 236 ~~a~~~~~~~~~~~~~p----~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 311 (350)
++|...|++..+. .| +...+..+...+... |++++|...|++..+.. +.+...+..+..++...|++++|.+
T Consensus 238 ~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 238 QQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYE-ESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 34 677788888777766 99999999999999886 6788899999999999999999998
Q ss_pred HHHHhh
Q 018782 312 LADKME 317 (350)
Q Consensus 312 ~~~~~~ 317 (350)
.+.++.
T Consensus 314 ~~~~~~ 319 (474)
T 4abn_A 314 SKGKTK 319 (474)
T ss_dssp HTTTCC
T ss_pred Hhcccc
Confidence 776664
No 68
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.61 E-value=5.2e-12 Score=117.41 Aligned_cols=254 Identities=13% Similarity=0.111 Sum_probs=136.4
Q ss_pred ccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018782 22 KRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGM 101 (350)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 101 (350)
..+++++|.++.+++. ++.+|..+..++...|++++|++.|.+. -+...|..++.++.+.|++++|.+.
T Consensus 1088 ~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIey 1156 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 1156 (1630)
T ss_pred HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555555555442 3455555555555556666665555432 1455555555555566666666655
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCCHh----------------------------HHHHHHHHHhhCCCCccHHHHH
Q 018782 102 LREMRSIGAEPDAFSYSIFIHAFCEANDIH----------------------------SVFRVLDSMKRYNLVPNVFTYN 153 (350)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------------------~a~~~~~~~~~~~~~~~~~~~~ 153 (350)
|...++.. +++...+.++.+|++.++++ +|..+|... ..|.
T Consensus 1157 L~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~ 1225 (1630)
T 1xi4_A 1157 LQMARKKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 1225 (1630)
T ss_pred HHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHH
Confidence 55555432 22222223455555555444 444444432 2444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 018782 154 CIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVG 233 (350)
Q Consensus 154 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 233 (350)
.+..++.+.|++++|.+.+++. .+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|
T Consensus 1226 rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G 1294 (1630)
T 1xi4_A 1226 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRG 1294 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcC
Confidence 4444444444444444444443 1334444444555555554444443332 2234456667888888888
Q ss_pred CHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhc-cCcHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHcCCCh
Q 018782 234 RFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKK-KGKLEEACKYFEMMVDEGIPP------YSSTVEMLRNRLVGLGFL 306 (350)
Q Consensus 234 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~ 306 (350)
.+++|..+++...... .-....|+-+...+++. .++..++.+.|..- -++++ +...|..++..|.+.|++
T Consensus 1295 ~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~r--ini~k~~r~~e~~~lW~elv~LY~~~~e~ 1371 (1630)
T 1xi4_A 1295 YFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEY 1371 (1630)
T ss_pred CHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHh--cccchHhHHHHHHHHHHHHHHHHHhcccH
Confidence 8888888887776543 22334454444444432 24444444444422 22333 567788888999999999
Q ss_pred hHHHH
Q 018782 307 DIIEI 311 (350)
Q Consensus 307 ~~a~~ 311 (350)
+.|..
T Consensus 1372 dnA~~ 1376 (1630)
T 1xi4_A 1372 DNAII 1376 (1630)
T ss_pred HHHHH
Confidence 98883
No 69
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.60 E-value=7e-13 Score=111.56 Aligned_cols=310 Identities=12% Similarity=-0.011 Sum_probs=211.5
Q ss_pred CCcCHhhHHHHHHHH--HccCChHHHHHHHHHhhh---cCC--CCHHHHHHHHHH--HhccCCHHHHH---------HHH
Q 018782 6 IKPSIYDLDQLLHAL--CKRKHVKVAHQFFDNAKH---EFT--PTVKTYSILVRG--LGDVGELSEAR---------KLF 67 (350)
Q Consensus 6 ~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~---~~~--~~~~~~~~l~~~--~~~~~~~~~a~---------~~~ 67 (350)
..|+..+-..+-..| ...+++++|.++++.+.. ... ++...|..++.. ....+.+..+. +.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 445666666666676 789999999999999755 222 233334444432 11112222222 566
Q ss_pred HHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHhcCCHhHHHHHHH
Q 018782 68 DEMLERKCPVD----ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGA-EPD----AFSYSIFIHAFCEANDIHSVFRVLD 138 (350)
Q Consensus 68 ~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 138 (350)
+.+.....+.+ ...+......+...|++++|+..|++..+... .++ ..++..+...|...|+++.|...++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 66543211111 11233455667789999999999999986421 122 3477888999999999999999999
Q ss_pred HHhhC----CC-C-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CC---CCHHHHHHHHHHHhcccCHHHHHHHH
Q 018782 139 SMKRY----NL-V-PNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG--AN---PDEWSYNAILAYHCDRAEVNMALRLI 207 (350)
Q Consensus 139 ~~~~~----~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~---~~~~~~~~ll~~~~~~~~~~~a~~~~ 207 (350)
+..+. +. . ....+++.+..+|...|++++|...+++..+.. .. ....++..+...|...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 87542 11 1 125578889999999999999999999887531 11 12346777888899999999999999
Q ss_pred HHHHh-----CCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCC---CCCHHHHHHHHHHHhhccCc---HHHHHH
Q 018782 208 TRMTK-----ENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGF---YPSVSTYSVMVHGLCKKKGK---LEEACK 276 (350)
Q Consensus 208 ~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~ll~~~~~~~~~---~~~a~~ 276 (350)
++... ... ....++..+..++.+.|++++|...+++..+... .|........+.......++ +.+|+.
T Consensus 246 ~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99877 433 3367788899999999999999999999886421 23333223334444444477 777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782 277 YFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER 318 (350)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 318 (350)
.+++.. ..+.....+..+...|...|++++|...+++..+
T Consensus 325 ~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 325 YFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777621 2223445677899999999999999999998865
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=3.5e-14 Score=115.95 Aligned_cols=174 Identities=14% Similarity=0.079 Sum_probs=119.0
Q ss_pred cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 018782 39 EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER-------KCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI--- 108 (350)
Q Consensus 39 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 108 (350)
..|.+..++..+...+...|++++|..+++++.+. ..+....++..+..++...|++++|...+++..+.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34556778888899999999999999999888763 23334667788888888899999998888888753
Q ss_pred ---CC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC------CC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018782 109 ---GA-EPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY------NL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIE 177 (350)
Q Consensus 109 ---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (350)
+. +....++..+...+...|++++|...++++.+. +. +....++..+...+...|++++|...++++.+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 223456677777888888888888888777543 11 22345566677777777777777777777665
Q ss_pred c------CCCC-CHHHHHHHHHHHhcccCHHHHHHHHHHHHh
Q 018782 178 R------GANP-DEWSYNAILAYHCDRAEVNMALRLITRMTK 212 (350)
Q Consensus 178 ~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 212 (350)
. +..| ...++..+...+...|++++|...++++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 1111 233455566666666677766666666554
No 71
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.57 E-value=4.5e-12 Score=109.02 Aligned_cols=237 Identities=10% Similarity=0.057 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---CHhHHHHHHHHHhhCCCCccHHHHHHHH
Q 018782 80 LAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN---DIHSVFRVLDSMKRYNLVPNVFTYNCII 156 (350)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 156 (350)
..+..+...|...+.++++......+.+.-...++..+..+...|...| +.++|+..|++..+.| +++...+..+.
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg 220 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVA 220 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 3444455555555543333333222221111223336777888888888 8888888888888877 45666556666
Q ss_pred HHHHcc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--hcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 018782 157 RKLCKN----EKVEEAYQLLDEMIERGANPDEWSYNAILAY-H--CDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLL 229 (350)
Q Consensus 157 ~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 229 (350)
..|... +++++|...|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..|...|
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y 293 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLY 293 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 666554 68888888888877 32 44555556555 3 45788888999888888765 556677777777
Q ss_pred HHcC-----CHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhc---cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 018782 230 VRVG-----RFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKK---KGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLV 301 (350)
Q Consensus 230 ~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 301 (350)
. .| ++++|...|++.. . -+......+-..|..- ..++++|..+|++..+.| ++.....+...|.
T Consensus 294 ~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 294 Y-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFS 365 (452)
T ss_dssp H-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHH
T ss_pred H-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHH
Confidence 6 45 8888888888877 3 2445555555444331 138888999998888877 3444556666666
Q ss_pred c----CCChhHHHHHHHHhhccCCCcHHHHHHHhc
Q 018782 302 G----LGFLDIIEILADKMERSTSCTIQELANAMR 332 (350)
Q Consensus 302 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 332 (350)
. ..+.++|..+++...+.+.......+..+.
T Consensus 366 ~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~ 400 (452)
T 3e4b_A 366 QGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLE 400 (452)
T ss_dssp SCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4 458888888888888776555554444443
No 72
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.56 E-value=1.2e-12 Score=112.47 Aligned_cols=289 Identities=11% Similarity=0.064 Sum_probs=179.6
Q ss_pred HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782 16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL---SEARKLFDEMLERKCPVDILAHNSLLEAMCKA 92 (350)
Q Consensus 16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (350)
+...+.+.|++++|.++|+..... .++..+..+...|...|+. ++|...|++..+. ++..+..+...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 556677888999999999887653 2344555666667777777 8888888887754 455566666655554
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-----------------------------------cCCHh-
Q 018782 93 G-----NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE-----------------------------------ANDIH- 131 (350)
Q Consensus 93 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------------------~~~~~- 131 (350)
+ ++++|+..|++..+.|.. + .+..|...|.. .+.++
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 4 678888888888776532 2 33334444433 33222
Q ss_pred ---HHHHHHHHHhhCCCCccHHHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----cCHH
Q 018782 132 ---SVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNE---KVEEAYQLLDEMIERGANPDEWSYNAILAYHCDR----AEVN 201 (350)
Q Consensus 132 ---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~ 201 (350)
.+..+++.... .+...+..+...|...| +.++|+..|++..+.|.. +...+..+...|... ++++
T Consensus 160 ~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 160 HLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp GHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHH
Confidence 22223333222 23337778888888888 899999999999888744 555555666666554 6899
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHH-H--HHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccC-----cHHH
Q 018782 202 MALRLITRMTKENVMPDRHTYNMVLKL-L--VRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKG-----KLEE 273 (350)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-----~~~~ 273 (350)
+|...|+... . -+...+..+... + ...+++++|...|++..+.| +...+..+-..|. . | ++++
T Consensus 235 ~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~-G~g~~~d~~~ 305 (452)
T 3e4b_A 235 TAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-E-GKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-H-CSSSCCCHHH
T ss_pred HHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-c-CCCCCCCHHH
Confidence 9999999987 3 345666667766 4 46889999999999998875 5556666655554 3 5 9999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHc----CCChhHHHHHHHHhhccCCCcHHHHHHHh
Q 018782 274 ACKYFEMMVDEGIPPYSSTVEMLRNRLVG----LGFLDIIEILADKMERSTSCTIQELANAM 331 (350)
Q Consensus 274 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 331 (350)
|+.+|++.. . -++.....+...|.. ..++++|..++++..+.+.......+..+
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~ 363 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQL 363 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 999999887 4 477888888888876 34899999999998877655444433333
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.55 E-value=1.4e-12 Score=97.79 Aligned_cols=164 Identities=11% Similarity=-0.019 Sum_probs=101.7
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018782 12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK 91 (350)
Q Consensus 12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (350)
.+..+...+...|++++|...++.+....+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 445555666666777777777766665555566666666666667777777777776666552 2355666666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHH
Q 018782 92 AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQL 171 (350)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 171 (350)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666666542 2345555566666666666666666666665543 33455566666666666666666666
Q ss_pred HHHHHHc
Q 018782 172 LDEMIER 178 (350)
Q Consensus 172 ~~~~~~~ 178 (350)
++++.+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6665543
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.53 E-value=4.5e-12 Score=98.67 Aligned_cols=196 Identities=13% Similarity=0.006 Sum_probs=155.0
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 018782 8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFT-PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLL 86 (350)
Q Consensus 8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 86 (350)
.|+..+......+...|++++|...|+......| ++...+..+..++...|++++|++.|++..+.... +..+|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4678888889999999999999999999888666 88888888999999999999999999999987443 678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCc--cHHHHHHHHH
Q 018782 87 EAMCKAGNIDEAHGMLREMRSIGAEPDA-------FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVP--NVFTYNCIIR 157 (350)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 157 (350)
.++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|...|++..+.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 99999999999999999999863 2344 457788888999999999999999998864 23 3567777777
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC
Q 018782 158 KLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN 214 (350)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 214 (350)
++...| ...++++...+.. +...|..... ...+.+++|...+++..+..
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLASS-NKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTTT-CHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHHhcccC-CHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 776544 3445555554322 4444544432 34567899999999998864
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.53 E-value=1.2e-12 Score=110.26 Aligned_cols=226 Identities=8% Similarity=0.009 Sum_probs=111.8
Q ss_pred HHHHccCChHHHHHHHHHhhhc---CCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC------CCHHHHHHH
Q 018782 18 HALCKRKHVKVAHQFFDNAKHE---FTP---TVKTYSILVRGLGDVGELSEARKLFDEMLERKCP------VDILAHNSL 85 (350)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l 85 (350)
..+...|++++|...|++.... .+. ...++..+..++...|+++.|...+++..+.... ....+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3445566666666666665331 111 2345666666666666666666666665432100 013345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----CC-CccHHHHHHH
Q 018782 86 LEAMCKAGNIDEAHGMLREMRSIGAE-PD----AFSYSIFIHAFCEANDIHSVFRVLDSMKRY----NL-VPNVFTYNCI 155 (350)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l 155 (350)
..+|...|++++|+..+++..+.... ++ ..++..+..+|...|++++|...+++..+. +. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 66666666666666666665532100 11 124555566666666666666666655441 11 2234455555
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHhcccC---HHHHHHHHHHHHhCCCCC-ChhHHHHHHH
Q 018782 156 IRKLCKNEKVEEAYQLLDEMIERG----ANPDEWSYNAILAYHCDRAE---VNMALRLITRMTKENVMP-DRHTYNMVLK 227 (350)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~ 227 (350)
..++.+.|++++|...+++..+.. -......+..+...+...|+ .++|+.+++.. +..| ....+..+..
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHH
Confidence 666666666666666665554321 00011123334444445555 44444444333 1111 1223444555
Q ss_pred HHHHcCCHhHHHHHHHHHH
Q 018782 228 LLVRVGRFDRATEVWESME 246 (350)
Q Consensus 228 ~~~~~~~~~~a~~~~~~~~ 246 (350)
.|...|++++|...+++..
T Consensus 348 ~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555544
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.53 E-value=1.5e-11 Score=103.16 Aligned_cols=299 Identities=12% Similarity=0.075 Sum_probs=193.3
Q ss_pred HHHHHHHccCChHHHHHHHHHhhhcCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CCH----HHHHH
Q 018782 15 QLLHALCKRKHVKVAHQFFDNAKHEFTPTV-----KTYSILVRGLGDVGELSEARKLFDEMLERKCP-VDI----LAHNS 84 (350)
Q Consensus 15 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~ 84 (350)
.....+...|++++|...++......+++. .++..+...+...|++++|...+++....... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 334556678999999999988766433332 24667777888889999999999887653111 122 23566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCC----CccHHHHH
Q 018782 85 LLEAMCKAGNIDEAHGMLREMRSI----GAE--P-DAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNL----VPNVFTYN 153 (350)
Q Consensus 85 l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~ 153 (350)
+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++...... .....++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777888899999999998887652 221 2 234556677888888999999999988765321 11235677
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHH-----HHHHHHhcccCHHHHHHHHHHHHhCCCCCC---hhHHHH
Q 018782 154 CIIRKLCKNEKVEEAYQLLDEMIERGANPDE-WSYN-----AILAYHCDRAEVNMALRLITRMTKENVMPD---RHTYNM 224 (350)
Q Consensus 154 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~ 224 (350)
.+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++........+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 7778888899999999999887754222211 1222 223346688899999998888765432211 224566
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHhc----CCCCCHH-HHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 018782 225 VLKLLVRVGRFDRATEVWESMEKR----GFYPSVS-TYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNR 299 (350)
Q Consensus 225 l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 299 (350)
+...+...|++++|...+++.... |..++.. .+..+...+... |+.++|...+++..... ++ ......
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~l~~al~~~-~~-----~g~~~~ 331 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA-GRKSDAQRVLLDALKLA-NR-----TGFISH 331 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHH-HH-----HCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHh-cc-----ccHHHH
Confidence 778888889999999988887642 2111222 333344444444 88999999888887643 11 112234
Q ss_pred HHcCCChhHHHHHHHHhhccCCC
Q 018782 300 LVGLGFLDIIEILADKMERSTSC 322 (350)
Q Consensus 300 ~~~~g~~~~a~~~~~~~~~~~~~ 322 (350)
+...| +....+++.+....+.
T Consensus 332 ~~~~g--~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 332 FVIEG--EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHTTH--HHHHHHHHHHHHTTCS
T ss_pred HHHcc--HHHHHHHHHHHhCCCC
Confidence 44455 6677777777766553
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.53 E-value=1.1e-11 Score=103.97 Aligned_cols=273 Identities=12% Similarity=0.067 Sum_probs=196.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----Hh
Q 018782 45 KTYSILVRGLGDVGELSEARKLFDEMLERKCPVDIL----AHNSLLEAMCKAGNIDEAHGMLREMRSIGA-EPD----AF 115 (350)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 115 (350)
.........+...|++++|...+++........+.. +++.+...+...|++++|...+++...... ..+ ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 445556667778999999999999988764333332 566777889999999999999999875311 112 23
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHhhC----CCC--c-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC----CH
Q 018782 116 SYSIFIHAFCEANDIHSVFRVLDSMKRY----NLV--P-NVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANP----DE 184 (350)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~ 184 (350)
++..+...+...|++++|...+++..+. +.. | ...++..+...+...|++++|...+++........ ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 4567888899999999999999987542 222 2 34566778889999999999999999988653321 23
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC-hhHHH-----HHHHHHHHcCCHhHHHHHHHHHHhcCCCC---CHH
Q 018782 185 WSYNAILAYHCDRAEVNMALRLITRMTKENVMPD-RHTYN-----MVLKLLVRVGRFDRATEVWESMEKRGFYP---SVS 255 (350)
Q Consensus 185 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~p---~~~ 255 (350)
.++..+...+...|++++|...++........++ ...+. ..+..+...|++++|...+++.......+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 5677788889999999999999998865421111 11221 23345779999999999999987643221 123
Q ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782 256 TYSVMVHGLCKKKGKLEEACKYFEMMVDE----GIPPYS-STVEMLRNRLVGLGFLDIIEILADKMER 318 (350)
Q Consensus 256 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 318 (350)
.+..+...+... |++++|...+++.... +.+++. ..+..+..++...|+.++|...+++...
T Consensus 255 ~~~~la~~~~~~-g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 255 QWRNIARAQILL-GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666655 9999999999987543 322233 3677788899999999999999988754
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.52 E-value=1e-12 Score=118.42 Aligned_cols=167 Identities=13% Similarity=0.062 Sum_probs=144.4
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782 8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLE 87 (350)
Q Consensus 8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 87 (350)
-++..|+.+..++.+.|++++|++.|++..+..|.+..+|..+..+|.+.|++++|++.|++.++.... +..+|..+..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 346778899999999999999999999988877888999999999999999999999999999887543 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHH
Q 018782 88 AMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEE 167 (350)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 167 (350)
++...|++++|++.|++..+.. +-+...+..+..++...|++++|+..|++..+.. +-+...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999998863 3356788899999999999999999999988765 4467888899999999999999
Q ss_pred HHHHHHHHHH
Q 018782 168 AYQLLDEMIE 177 (350)
Q Consensus 168 a~~~~~~~~~ 177 (350)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888887754
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.52 E-value=1.5e-12 Score=117.33 Aligned_cols=169 Identities=14% Similarity=0.089 Sum_probs=146.2
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 018782 40 FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI 119 (350)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 119 (350)
.|.++.+|+.|..++.+.|++++|++.|++.++.... +..+|+.+..++.+.|++++|++.|++.++.. +-+...|..
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4567889999999999999999999999999987443 78899999999999999999999999998864 335778999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC
Q 018782 120 FIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAE 199 (350)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 199 (350)
+..++...|++++|+..|++..+.. +-+..+|..+..+|...|++++|+..|++..+.... +...+..+..++...++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhccc
Confidence 9999999999999999999998865 446788999999999999999999999999988544 67888899999999999
Q ss_pred HHHHHHHHHHHHh
Q 018782 200 VNMALRLITRMTK 212 (350)
Q Consensus 200 ~~~a~~~~~~~~~ 212 (350)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888887654
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.51 E-value=6.8e-11 Score=91.90 Aligned_cols=204 Identities=11% Similarity=-0.005 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHH
Q 018782 79 ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRK 158 (350)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (350)
+..+......+...|++++|+..|++..+...+++...+..+..++...|++++|+..+++..+.. +.+..++..+..+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 344444444444444444444444444443222333344444444444445555554444444432 2233444444455
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC---hhHHHHHHHH
Q 018782 159 LCKNEKVEEAYQLLDEMIERGANPDE-------WSYNAILAYHCDRAEVNMALRLITRMTKENVMPD---RHTYNMVLKL 228 (350)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 228 (350)
+...|++++|...+++..+..+. +. ..|..+...+...|++++|...++...+. .|+ ...+..+..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 55555555555555555444221 22 23444445555566666666666666553 232 3444445555
Q ss_pred HHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 018782 229 LVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEML 296 (350)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 296 (350)
+... +..+++++...+ ..+...+...... ..+.+++|+..+++..+.. |.+..+...+
T Consensus 163 ~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~~~---~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l 220 (228)
T 4i17_A 163 FYNN-----GADVLRKATPLA-SSNKEKYASEKAK---ADAAFKKAVDYLGEAVTLS-PNRTEIKQMQ 220 (228)
T ss_dssp HHHH-----HHHHHHHHGGGT-TTCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHH-----HHHHHHHHHhcc-cCCHHHHHHHHHH---HHHHHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 4432 233344444332 1233334333322 2256677777777776664 4444444433
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.50 E-value=5.8e-12 Score=94.34 Aligned_cols=164 Identities=14% Similarity=0.068 Sum_probs=87.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 018782 45 KTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAF 124 (350)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (350)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555556666666666666666655542 2245555666666666666666666666665542 23444555555555
Q ss_pred HhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHH
Q 018782 125 CEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMAL 204 (350)
Q Consensus 125 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 204 (350)
...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.... +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence 55566666666655554432 234445555555555555555555555555544321 3444444455555555555555
Q ss_pred HHHHHHHh
Q 018782 205 RLITRMTK 212 (350)
Q Consensus 205 ~~~~~~~~ 212 (350)
..++.+.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.46 E-value=7.5e-13 Score=106.35 Aligned_cols=226 Identities=15% Similarity=0.065 Sum_probs=144.4
Q ss_pred HccCChHHHHHHHHHhhh--------cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc------C-CCCCHHHHHHH
Q 018782 21 CKRKHVKVAHQFFDNAKH--------EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER------K-CPVDILAHNSL 85 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 85 (350)
...|++++|..+|++... ..+....++..+..++...|++++|+..+++..+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456788888888877643 12345678889999999999999999999988754 1 12245678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC------C-CCccHHH
Q 018782 86 LEAMCKAGNIDEAHGMLREMRSI------G-AEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY------N-LVPNVFT 151 (350)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 151 (350)
..++...|++++|.+.+++..+. . .+....++..+...+...|++++|..++++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999888764 1 1223457778888888899999999888887654 1 1223567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHhcccCH------HHHHHHHHHHHhCCCCC
Q 018782 152 YNCIIRKLCKNEKVEEAYQLLDEMIER-------GANPD-EWSYNAILAYHCDRAEV------NMALRLITRMTKENVMP 217 (350)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~-~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~ 217 (350)
+..+..++...|++++|...+++..+. ...+. ...+..+.......+.. ..+...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 778888888888888888888887653 11111 22232222222222221 112212111111 0111
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782 218 DRHTYNMVLKLLVRVGRFDRATEVWESMEK 247 (350)
Q Consensus 218 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 247 (350)
...++..+..+|...|++++|..++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234566677777777777777777776654
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.44 E-value=2.8e-11 Score=101.80 Aligned_cols=224 Identities=11% Similarity=0.067 Sum_probs=111.0
Q ss_pred HHHccCChHHHHHHHHHhhhc---CC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC--C----CCHHHHHHHH
Q 018782 19 ALCKRKHVKVAHQFFDNAKHE---FT---PTVKTYSILVRGLGDVGELSEARKLFDEMLERKC--P----VDILAHNSLL 86 (350)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~~l~ 86 (350)
.+...|++++|...|++.... .+ ....++..+..++...|+++.|...+++..+... . ....+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 344566666666666665331 11 1234555666666666666666666666543210 0 0133455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHhh-----CCCCccHHHHHHHH
Q 018782 87 EAMCKAGNIDEAHGMLREMRSI----GAE-PDAFSYSIFIHAFCEANDIHSVFRVLDSMKR-----YNLVPNVFTYNCII 156 (350)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~ 156 (350)
.++...|++++|.+.|++..+. +.+ ....++..+..+|...|++++|...+++..+ .. +....++..+.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 6666666666666666655432 100 0123455555666666666666666665544 22 22344555556
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCC---C-CHHHHHHHHHHHhcccC---HHHHHHHHHHHHhCCCCC-ChhHHHHHHHH
Q 018782 157 RKLCKNEKVEEAYQLLDEMIERGAN---P-DEWSYNAILAYHCDRAE---VNMALRLITRMTKENVMP-DRHTYNMVLKL 228 (350)
Q Consensus 157 ~~~~~~g~~~~a~~~~~~~~~~~~~---~-~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 228 (350)
.++.+.|++++|...+++..+.... + ....+..+...+...++ ..+|+..++. .+..| ....+..+...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHH
Confidence 6666666666666666665543211 1 12223333334444444 4444444443 11111 12234445555
Q ss_pred HHHcCCHhHHHHHHHHHH
Q 018782 229 LVRVGRFDRATEVWESME 246 (350)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~ 246 (350)
|...|++++|...|++..
T Consensus 346 y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 555666666665555544
No 84
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.44 E-value=8.6e-10 Score=98.43 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=82.7
Q ss_pred CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHhcCC-CCCHHHH
Q 018782 7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGE---LSEARKLFDEMLERKC-PVDILAH 82 (350)
Q Consensus 7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~ 82 (350)
+-|..+|..++..+.+.+.++.+..+|+++...+|.+...|...+..-.+.++ ++.+..+|++...... +|++..|
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 45777888899988888999999999999988888899999998888888888 9999999999887631 3688888
Q ss_pred HHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CCC-HhhHHHHHH
Q 018782 83 NSLLEAMCKAGNI--------DEAHGMLREMRS-IGA-EPD-AFSYSIFIH 122 (350)
Q Consensus 83 ~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~ 122 (350)
...+....+.++. +.+.++|+.... .|. .++ ...|...+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~ 193 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLH 193 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 7777665554442 334466666553 344 333 345554444
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.44 E-value=2e-11 Score=98.80 Aligned_cols=166 Identities=11% Similarity=0.047 Sum_probs=82.5
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHhcc-C-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018782 28 VAHQFFDNAKHEFTPTVKTYSILVRGLGDV-G-ELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREM 105 (350)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 105 (350)
+|.+++.+..+..+++...| .+ +... + ++++|...|++. ...|...|++++|...|.+.
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~a 63 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFM-KL---FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKA 63 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHH-HH---HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcc-hh---cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHH
Confidence 45666666666555433333 22 2211 2 477777776665 33456677777777777766
Q ss_pred HhC----CCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----CCCc-cHHHHHHHHHHHHcc-CCHHHHHHHHHH
Q 018782 106 RSI----GAEPD-AFSYSIFIHAFCEANDIHSVFRVLDSMKRY----NLVP-NVFTYNCIIRKLCKN-EKVEEAYQLLDE 174 (350)
Q Consensus 106 ~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~-g~~~~a~~~~~~ 174 (350)
.+. |.+++ ..+|+.+..+|...|++++|+..+++..+. |-.. -..++..+..+|... |++++|+..|++
T Consensus 64 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~ 143 (292)
T 1qqe_A 64 ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL 143 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 542 21111 345666666666666666666666665432 1000 023444555555553 555555555555
Q ss_pred HHHcCCCC-C----HHHHHHHHHHHhcccCHHHHHHHHHHHHh
Q 018782 175 MIERGANP-D----EWSYNAILAYHCDRAEVNMALRLITRMTK 212 (350)
Q Consensus 175 ~~~~~~~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 212 (350)
..+..... + ..++..+...+...|++++|...++....
T Consensus 144 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 144 AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44321100 0 12334444444444444444444444444
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.43 E-value=1.3e-11 Score=99.87 Aligned_cols=210 Identities=10% Similarity=0.000 Sum_probs=124.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----CCCcc-HHHHHHHHHHHHccCCHHHH
Q 018782 94 NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRY----NLVPN-VFTYNCIIRKLCKNEKVEEA 168 (350)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a 168 (350)
++++|...|.+. ...|...|++++|...|++..+. |-++. ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 367777777665 33456677777777777766432 21111 45677777777777777777
Q ss_pred HHHHHHHHHcCCCC-C----HHHHHHHHHHHhcc-cCHHHHHHHHHHHHhCCCCC-C----hhHHHHHHHHHHHcCCHhH
Q 018782 169 YQLLDEMIERGANP-D----EWSYNAILAYHCDR-AEVNMALRLITRMTKENVMP-D----RHTYNMVLKLLVRVGRFDR 237 (350)
Q Consensus 169 ~~~~~~~~~~~~~~-~----~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~ 237 (350)
+..+++..+..... + ..++..+...|... |++++|+..+++..+..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 77777765431110 1 34566677777774 77777777777766531110 1 2456677777777777777
Q ss_pred HHHHHHHHHhcCCCCCH------HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHH--cC
Q 018782 238 ATEVWESMEKRGFYPSV------STYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPY------SSTVEMLRNRLV--GL 303 (350)
Q Consensus 238 a~~~~~~~~~~~~~p~~------~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~--~~ 303 (350)
|...|++..+....... ..+..+..++... |++++|...|++..+.. |+ ...+..++.++. ..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAA-TDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHT-TCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCH
Confidence 77777777764322111 1334444444444 77777777777776543 21 123444555554 45
Q ss_pred CChhHHHHHHHHhhccCC
Q 018782 304 GFLDIIEILADKMERSTS 321 (350)
Q Consensus 304 g~~~~a~~~~~~~~~~~~ 321 (350)
+++++|+..|+++...++
T Consensus 254 ~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp TTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHhccCCccHH
Confidence 667777777777666543
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.43 E-value=1.3e-10 Score=92.55 Aligned_cols=144 Identities=10% Similarity=0.037 Sum_probs=63.7
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCC-CccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018782 98 AHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNL-VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMI 176 (350)
Q Consensus 98 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 176 (350)
|+..|++..+.+ .++..++..+..++...|++++|++++.+....+- .-+...+..++..+.+.|+++.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444432 23333334445555555555555555555444331 1234444455555555555555555555554
Q ss_pred HcCCCC-----CHHHHHHHHHHHh--c--ccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 018782 177 ERGANP-----DEWSYNAILAYHC--D--RAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESME 246 (350)
Q Consensus 177 ~~~~~~-----~~~~~~~ll~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 246 (350)
+. .| +..+...+..++. . .++...|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 22 1233333333311 1 12455555555554432 1221222222334555555555555555433
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.41 E-value=3.3e-12 Score=102.59 Aligned_cols=167 Identities=16% Similarity=0.131 Sum_probs=77.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc-----CC--CCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC------CCCC
Q 018782 151 TYNCIIRKLCKNEKVEEAYQLLDEMIER-----GA--NPDEWSYNAILAYHCDRAEVNMALRLITRMTKE------NVMP 217 (350)
Q Consensus 151 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~ 217 (350)
++..+..++...|++++|...+++.... +. .....++..+...+...|++++|...+++..+. +..|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444444455555555555554444332 00 112334444555555555555555555554432 0011
Q ss_pred -ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHhhc------cCcHHHHHHHHHHHHh
Q 018782 218 -DRHTYNMVLKLLVRVGRFDRATEVWESMEKR-------GFYPSVSTYSVMVHGLCKK------KGKLEEACKYFEMMVD 283 (350)
Q Consensus 218 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~~~~ll~~~~~~------~~~~~~a~~~~~~~~~ 283 (350)
...++..+..++...|++++|...++++.+. ...+....+...+..+... ...+..+...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 2345566666666777777777776666542 1112211111112111111 1122222222222211
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782 284 EGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER 318 (350)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 318 (350)
. .+....++..+..+|...|++++|..++++..+
T Consensus 247 ~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 D-SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp C-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred C-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 123445677788888888888888888887654
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.40 E-value=7.9e-11 Score=93.61 Aligned_cols=208 Identities=10% Similarity=-0.012 Sum_probs=116.4
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CCHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPT---VKTYSILVRGLGDVGELSEARKLFDEMLERKCP--VDILAHN 83 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~ 83 (350)
++..+..+...+...|++++|...|+.+....|.+ ...+..+..++...|++++|+..|++..+..+. ....++.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 44555566666777777777777777776655555 666777777777777777777777777765321 1244566
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHH
Q 018782 84 SLLEAMCK--------AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCI 155 (350)
Q Consensus 84 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 155 (350)
.+..++.. .|++++|+..|+++.+..+ .+......+... ..+.. .-...+..+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~~--------------~~~~~----~~~~~~~~l 154 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQKI--------------RELRA----KLARKQYEA 154 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHH--------------HHHHH----HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHHH--------------HHHHH----HHHHHHHHH
Confidence 66666766 7777777777777766421 122222111000 00000 000113445
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhcc----------cCHHHHHHHHHHHHhCCCCCCh----
Q 018782 156 IRKLCKNEKVEEAYQLLDEMIERGANP--DEWSYNAILAYHCDR----------AEVNMALRLITRMTKENVMPDR---- 219 (350)
Q Consensus 156 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~---- 219 (350)
..+|.+.|++++|...|+++.+..+.. ....+..+..++... |++++|...++.+.+.. |+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~ 232 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSPLLR 232 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCTHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCChHHH
Confidence 566667777777777777766653221 123455555555544 66677777777766643 332
Q ss_pred hHHHHHHHHHHHcCCHhH
Q 018782 220 HTYNMVLKLLVRVGRFDR 237 (350)
Q Consensus 220 ~~~~~l~~~~~~~~~~~~ 237 (350)
.....+...+...+++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 233 TAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 233444444444444443
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.35 E-value=1.4e-10 Score=92.08 Aligned_cols=188 Identities=10% Similarity=0.021 Sum_probs=128.7
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-CHh
Q 018782 41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD---ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGA-EP-DAF 115 (350)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~ 115 (350)
+.++..+..+...+.+.|++++|...|+++.+..+. + ...+..+..++...|++++|+..|++..+... .| ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 456677777888888888888888888888876332 3 66777788888888888888888888877532 11 234
Q ss_pred hHHHHHHHHHh--------cCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 018782 116 SYSIFIHAFCE--------ANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSY 187 (350)
Q Consensus 116 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 187 (350)
.+..+..++.. .|++++|...|+++.+.. +.+......+.. +..+... -...+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~--------------~~~~~~~----~~~~~ 151 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQK--------------IRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHH--------------HHHHHHH----HHHHH
Confidence 56666777777 777888888887776643 112222222111 1111110 01124
Q ss_pred HHHHHHHhcccCHHHHHHHHHHHHhCCCCC--ChhHHHHHHHHHHHc----------CCHhHHHHHHHHHHhc
Q 018782 188 NAILAYHCDRAEVNMALRLITRMTKENVMP--DRHTYNMVLKLLVRV----------GRFDRATEVWESMEKR 248 (350)
Q Consensus 188 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 248 (350)
..+...+...|++++|...|+.+.+..+.. ....+..+..+|... |++++|...|+++.+.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 567788899999999999999998864321 245677888888866 8999999999999976
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.35 E-value=1.4e-10 Score=88.79 Aligned_cols=164 Identities=11% Similarity=0.057 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHH----------------HHHHHhccCCHHHHHHHHHHHHhcC
Q 018782 11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSI----------------LVRGLGDVGELSEARKLFDEMLERK 74 (350)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (350)
..+......+...|++++|...|+......|.++..|.. +..++...|++++|+..|++..+..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 344445556677888888888888877655656666666 6666666666666666666666553
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC--HhHHHHHHHHHhhCCCCccHHHH
Q 018782 75 CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAND--IHSVFRVLDSMKRYNLVPNVFTY 152 (350)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~ 152 (350)
+. +...+..+..++...|++++|+..|++..+.. +.+..++..+..++...|+ ...+...++.... ..|....+
T Consensus 85 p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 PN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 22 55566666666666666666666666666542 2234455555555544332 2233334433322 12222233
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHc
Q 018782 153 NCIIRKLCKNEKVEEAYQLLDEMIER 178 (350)
Q Consensus 153 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (350)
.....++...|++++|...|++..+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33334444455556666666555544
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.31 E-value=6.3e-11 Score=107.10 Aligned_cols=154 Identities=16% Similarity=0.067 Sum_probs=76.7
Q ss_pred HccCChHHHHHHHHHhh--------hcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782 21 CKRKHVKVAHQFFDNAK--------HEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA 92 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (350)
...|++++|++.++.+. ...|.+...+..+..++...|++++|++.|++..+.... +...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence 44455555555555544 333444455555555555555555555555555544222 444555555555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHH
Q 018782 93 GNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLL 172 (350)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 172 (350)
|++++|+..|++..+.. +-+...+..+..++.+.|++++ ...|++..+.. +.+...|..+..++.+.|++++|...|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555555432 1233444455555555555555 55555554433 223444555555555555555555555
Q ss_pred HHHHHc
Q 018782 173 DEMIER 178 (350)
Q Consensus 173 ~~~~~~ 178 (350)
+++.+.
T Consensus 558 ~~al~l 563 (681)
T 2pzi_A 558 DEVPPT 563 (681)
T ss_dssp HTSCTT
T ss_pred Hhhccc
Confidence 554443
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.31 E-value=3.9e-10 Score=79.38 Aligned_cols=127 Identities=17% Similarity=0.159 Sum_probs=54.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 018782 48 SILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEA 127 (350)
Q Consensus 48 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 127 (350)
..+...+...|++++|..+++++.+... .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 3344444444444444444444443321 133444444444444444444444444444332 12233344444444444
Q ss_pred CCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018782 128 NDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIE 177 (350)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (350)
|++++|..+++++.+.. +.+..++..+...+...|++++|...++++..
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 44444444444443332 22333444444444444444444444444443
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.30 E-value=2.8e-10 Score=80.11 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=116.6
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018782 11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMC 90 (350)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (350)
..+..+...+...|++++|..+++.+....+.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3567788899999999999999999987667788999999999999999999999999998874 347788999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782 91 KAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN 144 (350)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 144 (350)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++....
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 9999999999999998864 3467788889999999999999999999987643
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.29 E-value=5.1e-11 Score=85.98 Aligned_cols=146 Identities=11% Similarity=-0.024 Sum_probs=106.4
Q ss_pred HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782 16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI 95 (350)
Q Consensus 16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (350)
|...+...|++++|+..++......|.++..+..+..+|.+.|++++|++.|++.++..+. +..+|..+..++...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 3445566788888888888876655566677778888888888888888888888877443 788888888888888888
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHH-HHHHhhCCCCccHHHHHHHHHHHHccCC
Q 018782 96 DEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRV-LDSMKRYNLVPNVFTYNCIIRKLCKNEK 164 (350)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (350)
++|+..|++..+.. +-+...+..+...+.+.|+.+++... +++..+.. |.+..+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 88888888888753 23566788888888888888765554 57776653 3456667666666665553
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.28 E-value=1.8e-08 Score=80.96 Aligned_cols=221 Identities=9% Similarity=0.077 Sum_probs=145.9
Q ss_pred cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hhc---C
Q 018782 23 RKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVG--ELSEARKLFDEMLERKCPVDILAHNSLLEAM----CKA---G 93 (350)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 93 (350)
....++|+..++.+..-.|.+..+|+.-..++...| +++++++.++.+...+++ +..+|+.-...+ ... +
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 46 EEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence 334467888888887777778888888888887777 888888888888877554 666666554444 444 6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh--HHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC------H
Q 018782 94 NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIH--SVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK------V 165 (350)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 165 (350)
++++++++++.+.+.. +-+..+|+.-.-.....|.++ +++..++++.+.. +-|..+|+.-...+.+.|. +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 7778888888887753 346667776666666677776 7777777777665 3466666666655666555 6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHH-HHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHhHHHHHH
Q 018782 166 EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNM-ALRLITRMTKEN--VMPDRHTYNMVLKLLVRVGRFDRATEVW 242 (350)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 242 (350)
+++++.++.+....+. |...|+.+-..+.+.|+... +..+...+...+ -..+...+..+..++.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6777777777766544 66666666666655555333 334444443322 1234556666666666667777777777
Q ss_pred HHHHh
Q 018782 243 ESMEK 247 (350)
Q Consensus 243 ~~~~~ 247 (350)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77664
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.28 E-value=5.7e-10 Score=85.33 Aligned_cols=130 Identities=10% Similarity=0.069 Sum_probs=64.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC
Q 018782 120 FIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAE 199 (350)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 199 (350)
+..++.+.|++++|...|++..+.. +.+...+..+..++...|++++|...|++..+..+. +..++..+..++...++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 5555666666666666666665543 334555566666666666666666666666655332 44555555555443332
Q ss_pred --HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH
Q 018782 200 --VNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVS 255 (350)
Q Consensus 200 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 255 (350)
...+...++.... ..|....+.....++...|++++|...|++..+. .|+..
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~ 191 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTE 191 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHH
Confidence 2233333333321 1122222333344444556666666666666553 45543
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.27 E-value=1.7e-09 Score=86.12 Aligned_cols=218 Identities=12% Similarity=0.087 Sum_probs=153.0
Q ss_pred HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 018782 16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNI 95 (350)
Q Consensus 16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (350)
..+++...|++... ...+|....+..+...+ ..+ |+..|+++.+.+ +++..++..+..++...|++
T Consensus 51 ~~Rs~iAlg~~~~~--------~~~~~~~~a~~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~ 116 (310)
T 3mv2_B 51 KAKTLLALGQYQSQ--------DPTSKLGKVLDLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDL 116 (310)
T ss_dssp HHHHHHHTTCCCCC--------CSSSTTHHHHHHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCCccC--------CCCCHHHHHHHHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 34677777776642 12234444444444444 222 788888887765 45666677888999999999
Q ss_pred HHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCc-----cHHHHHHHHHHH--H--ccCCH
Q 018782 96 DEAHGMLREMRSIGA-EPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVP-----NVFTYNCIIRKL--C--KNEKV 165 (350)
Q Consensus 96 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~--~--~~g~~ 165 (350)
++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+...+..++ . ..+++
T Consensus 117 eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~ 194 (310)
T 3mv2_B 117 DKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETA 194 (310)
T ss_dssp HHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccH
Confidence 999999999877653 235667888889999999999999999999775 35 345555555552 2 23489
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC---------CCCChhHHHHHHHHHHHcCCHh
Q 018782 166 EEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKEN---------VMPDRHTYNMVLKLLVRVGRFD 236 (350)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~ 236 (350)
.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.. -+.+..++..++......|+
T Consensus 195 q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-- 270 (310)
T 3mv2_B 195 TSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-- 270 (310)
T ss_dssp THHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--
Confidence 9999999998765 3453444455558889999999999998765531 12356667566666666786
Q ss_pred HHHHHHHHHHhcCCCCCHH
Q 018782 237 RATEVWESMEKRGFYPSVS 255 (350)
Q Consensus 237 ~a~~~~~~~~~~~~~p~~~ 255 (350)
+|.+++.++.+. .|+..
T Consensus 271 ~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 271 DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp TTHHHHHHHHHT--TCCCH
T ss_pred HHHHHHHHHHHh--CCCCh
Confidence 889999999985 55543
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.26 E-value=1.9e-09 Score=83.54 Aligned_cols=187 Identities=5% Similarity=-0.072 Sum_probs=122.7
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCH--HHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPT---VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDI--LAHN 83 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 83 (350)
++..+..+...+...|++++|...|+.+....|.+ ...+..+..++.+.|++++|+..|+++.+..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44566677778888999999999999987754433 467888889999999999999999998876433211 2455
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCC
Q 018782 84 SLLEAMCK------------------AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNL 145 (350)
Q Consensus 84 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 145 (350)
.+..++.. .|++++|+..|+++.+.. +-+........... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-----
Confidence 55555543 456777777777777642 11222221111100 000000
Q ss_pred CccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcccCHHHHHHHHHHHHhCC
Q 018782 146 VPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPD--EWSYNAILAYHCDRAEVNMALRLITRMTKEN 214 (350)
Q Consensus 146 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 214 (350)
......+...|.+.|++++|...|+++.+..+... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01113456778888899999999988887743311 2457778888888899999999888887764
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.24 E-value=2.3e-10 Score=85.08 Aligned_cols=162 Identities=8% Similarity=-0.012 Sum_probs=103.2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HH
Q 018782 12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA-MC 90 (350)
Q Consensus 12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 90 (350)
.+......+...|++++|...|+.+....|.+...+..+..++...|++++|+..+++...... +...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 4555666777788888888888887766667777788888888888888888888877766532 44333322211 11
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCc-cHHHHHHHHHHHHccCCHHHHH
Q 018782 91 KAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVP-NVFTYNCIIRKLCKNEKVEEAY 169 (350)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~ 169 (350)
..+....|+..+++..+.. +.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 2222334566677666642 2345666667777777777777777777776654211 2446666677777777777777
Q ss_pred HHHHHHH
Q 018782 170 QLLDEMI 176 (350)
Q Consensus 170 ~~~~~~~ 176 (350)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.24 E-value=3.2e-09 Score=81.38 Aligned_cols=176 Identities=9% Similarity=0.052 Sum_probs=83.6
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccC----CHHHHHHHHH
Q 018782 98 AHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNE----KVEEAYQLLD 173 (350)
Q Consensus 98 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~ 173 (350)
|++.|++..+.| +...+..+...|...+++++|..+|++..+.| +...+..+...|.. + ++++|...|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 344444444432 33444445555555555555555555554433 33444444444444 3 5555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhc----ccCHHHHHHHHHHHHhCCCC-CChhHHHHHHHHHHH----cCCHhHHHHHHHH
Q 018782 174 EMIERGANPDEWSYNAILAYHCD----RAEVNMALRLITRMTKENVM-PDRHTYNMVLKLLVR----VGRFDRATEVWES 244 (350)
Q Consensus 174 ~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 244 (350)
+..+.+ +...+..+...|.. .+++++|.++|++..+.+.. .+...+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 554432 34444444444444 45555555555555554321 013445555555555 4555566666655
Q ss_pred HHhcCCCCCHHHHHHHHHHHhhccC-----cHHHHHHHHHHHHhCC
Q 018782 245 MEKRGFYPSVSTYSVMVHGLCKKKG-----KLEEACKYFEMMVDEG 285 (350)
Q Consensus 245 ~~~~~~~p~~~~~~~ll~~~~~~~~-----~~~~a~~~~~~~~~~~ 285 (350)
..+. ..+...+..+-..|....| ++++|..+|++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5543 1122233333333332212 5556666666555554
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.24 E-value=8.3e-10 Score=88.92 Aligned_cols=167 Identities=11% Similarity=0.083 Sum_probs=113.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHH-
Q 018782 76 PVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNC- 154 (350)
Q Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 154 (350)
+.+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++.... |+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 3455666677777777888888888888777653 3355667777777778888888888887776543 34332222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHHcC
Q 018782 155 IIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMP-DRHTYNMVLKLLVRVG 233 (350)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 233 (350)
....+...++.++|...+++.....+. +...+..+...+...|++++|...+..+.+..... +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 223355666777777777777776443 66777777777778888888888888877754321 2456777788888888
Q ss_pred CHhHHHHHHHHHH
Q 018782 234 RFDRATEVWESME 246 (350)
Q Consensus 234 ~~~~a~~~~~~~~ 246 (350)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888877777654
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.23 E-value=7.6e-10 Score=100.09 Aligned_cols=186 Identities=10% Similarity=-0.031 Sum_probs=135.9
Q ss_pred HhcCCHhHHHHHHHHHh--------hCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 018782 125 CEANDIHSVFRVLDSMK--------RYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCD 196 (350)
Q Consensus 125 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 196 (350)
...|++++|+..+++.. +.. +.+...+..+..++...|++++|...++++.+.... +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67788888888888887 432 445677888888888888888888888888877544 67778888888888
Q ss_pred ccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHH
Q 018782 197 RAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACK 276 (350)
Q Consensus 197 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~ 276 (350)
.|++++|.+.|++..+... .+...+..+..++.+.|++++ ...|+++.+... -+...+..+..++... |++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~-g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAE-GDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8888888888888887643 356777888888888888888 888888887532 2455666666666655 88888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCC--------hhHHHHHHHHhh
Q 018782 277 YFEMMVDEGIPPYSSTVEMLRNRLVGLGF--------LDIIEILADKME 317 (350)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~~~ 317 (350)
.|+++.+.+ +.+...+..+..++...|+ +++|.+.+..+.
T Consensus 556 ~~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 556 TLDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 888887765 4456777777777766444 555555555554
No 104
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.23 E-value=4.4e-09 Score=80.60 Aligned_cols=175 Identities=11% Similarity=0.025 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----CHhHHHHHHH
Q 018782 63 ARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN----DIHSVFRVLD 138 (350)
Q Consensus 63 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 138 (350)
|++.|++..+.| ++..+..+...+...+++++|+..|++..+.| +...+..|...|.. + +.++|..+|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555555442 44555555555555555666666665555543 33444445555544 4 5566666666
Q ss_pred HHhhCCCCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhc----ccCHHHHHHHHHH
Q 018782 139 SMKRYNLVPNVFTYNCIIRKLCK----NEKVEEAYQLLDEMIERGAN-PDEWSYNAILAYHCD----RAEVNMALRLITR 209 (350)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~~ 209 (350)
+..+.| +...+..+...|.. .+++++|...|++..+.+.. .....+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 555543 34445555555554 55666666666665554321 014455555555554 5566666666666
Q ss_pred HHhCCCCCChhHHHHHHHHHHHc-C-----CHhHHHHHHHHHHhcC
Q 018782 210 MTKENVMPDRHTYNMVLKLLVRV-G-----RFDRATEVWESMEKRG 249 (350)
Q Consensus 210 ~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 249 (350)
..+. ..+...+..|..+|... | ++++|...|+...+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6554 12334455555555543 2 5666666666666554
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.22 E-value=6.1e-10 Score=98.86 Aligned_cols=156 Identities=8% Similarity=-0.018 Sum_probs=120.0
Q ss_pred cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018782 23 RKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML 102 (350)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 102 (350)
.|++++|.+.|+++....|.+...+..+...+...|++++|.+.|++..+... .+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999998877778899999999999999999999999999998743 37889999999999999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHcC
Q 018782 103 REMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKN---EKVEEAYQLLDEMIERG 179 (350)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 179 (350)
++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++... |+.++|.+.+++..+.+
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9998864 3467788899999999999999999999998764 44678888899999999 99999999999998875
Q ss_pred CC
Q 018782 180 AN 181 (350)
Q Consensus 180 ~~ 181 (350)
..
T Consensus 159 p~ 160 (568)
T 2vsy_A 159 VG 160 (568)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.22 E-value=6.6e-08 Score=77.72 Aligned_cols=234 Identities=9% Similarity=0.053 Sum_probs=160.5
Q ss_pred hccC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----Hhc
Q 018782 55 GDVG-ELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG--NIDEAHGMLREMRSIGAEPDAFSYSIFIHAF----CEA 127 (350)
Q Consensus 55 ~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 127 (350)
.+.| ..++|+++++.++..++. +..+|+.--.++...+ +++++++.++.+....+ -+..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhc
Confidence 3444 446899999999887544 7778888888888888 89999999999987642 3444555444444 444
Q ss_pred ---CCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC---
Q 018782 128 ---NDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVE--EAYQLLDEMIERGANPDEWSYNAILAYHCDRAE--- 199 (350)
Q Consensus 128 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~--- 199 (350)
+++++++.+++.+.+.. +.+..+|+.-.-++.+.|.++ ++++.++++.+..+. +...|+.-.....+.+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCC
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccch
Confidence 67888888888887765 457778877777777778777 888888888887655 77777766666666665
Q ss_pred ---HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCH-hHHHHHHHHHHhcC--CCCCHHHHHHHHHHHhhccCcHHH
Q 018782 200 ---VNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRF-DRATEVWESMEKRG--FYPSVSTYSVMVHGLCKKKGKLEE 273 (350)
Q Consensus 200 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~~ 273 (350)
++++++.++.++...+ -|...|+.+...+.+.|.. +.+..+..++.+.+ -..+...+..+...+... |+.++
T Consensus 199 ~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~-~~~~~ 276 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ-KKYNE 276 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT-TCHHH
T ss_pred hhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc-CCHHH
Confidence 7777777777777654 4667777777777777663 33555666555432 123556666666666654 77777
Q ss_pred HHHHHHHHHh-CCCCCCHHHHHH
Q 018782 274 ACKYFEMMVD-EGIPPYSSTVEM 295 (350)
Q Consensus 274 a~~~~~~~~~-~~~~~~~~~~~~ 295 (350)
|.++++.+.+ .+ |.....|..
T Consensus 277 A~~~~~~l~~~~D-pir~~yW~~ 298 (306)
T 3dra_A 277 SRTVYDLLKSKYN-PIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHHHTTC-GGGHHHHHH
T ss_pred HHHHHHHHHhccC-hHHHHHHHH
Confidence 7777777765 34 444444443
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.21 E-value=5.8e-10 Score=89.83 Aligned_cols=171 Identities=11% Similarity=0.012 Sum_probs=137.3
Q ss_pred hcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 018782 38 HEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSY 117 (350)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 117 (350)
...|.+...+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...++++... .|+....
T Consensus 111 ~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~ 187 (287)
T 3qou_A 111 XVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQ 187 (287)
T ss_dssp HHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHH
T ss_pred HHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHH
Confidence 334667788888999999999999999999999887443 7888999999999999999999999998765 3444433
Q ss_pred H-HHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHh
Q 018782 118 S-IFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANP-DEWSYNAILAYHC 195 (350)
Q Consensus 118 ~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~ 195 (350)
. .....+...++.+.|...+++..... +.+...+..+..++...|++++|...|.++.+..+.. +...+..+...+.
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 2 23334667788888999999887765 5578888999999999999999999999999875432 2667888999999
Q ss_pred cccCHHHHHHHHHHHHh
Q 018782 196 DRAEVNMALRLITRMTK 212 (350)
Q Consensus 196 ~~~~~~~a~~~~~~~~~ 212 (350)
..|+.+.|...+++...
T Consensus 267 ~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 267 ALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHCTTCHHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHHH
Confidence 99999999888887653
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.20 E-value=3.3e-09 Score=82.12 Aligned_cols=189 Identities=12% Similarity=0.100 Sum_probs=122.0
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCC-c-cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HHHH
Q 018782 113 DAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLV-P-NVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDE--WSYN 188 (350)
Q Consensus 113 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~ 188 (350)
+...+..+...+...|++++|...|+++.+.... | ....+..+..++.+.|++++|...|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666778888999999999999998775311 1 1357778888999999999999999999887543221 1343
Q ss_pred HHHHHHhc------------------ccCHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHHcCCHhHHHHHHHHHHhcC
Q 018782 189 AILAYHCD------------------RAEVNMALRLITRMTKENVMPDR-HTYNMVLKLLVRVGRFDRATEVWESMEKRG 249 (350)
Q Consensus 189 ~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 249 (350)
.+..++.. .|++++|...|+.+.+.. |+. ..+....... .+...+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~----------~~~~~~~~-- 148 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLV----------FLKDRLAK-- 148 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHH----------HHHHHHHH--
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHH----------HHHHHHHH--
Confidence 44444433 456667777777766643 222 2221111100 00000000
Q ss_pred CCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782 250 FYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYS---STVEMLRNRLVGLGFLDIIEILADKMERSTSCT 323 (350)
Q Consensus 250 ~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 323 (350)
....+...+... |++++|+..|+++++.. |.++ ..+..+..++.+.|++++|.+.++.+....+..
T Consensus 149 ------~~~~~a~~~~~~-~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 149 ------YEYSVAEYYTER-GAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ------HHHHHHHHHHHH-TCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ------HHHHHHHHHHHc-CcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 111233344555 99999999999998874 3333 578889999999999999999999988765543
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.20 E-value=3.3e-10 Score=84.20 Aligned_cols=159 Identities=13% Similarity=0.034 Sum_probs=70.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HH
Q 018782 47 YSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA-FC 125 (350)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 125 (350)
+..+...+...|++++|...|++..+..+ .+...+..+..++...|++++|+..+++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 44455555566666666666666554422 245556666666666666666666666655432 232222211111 11
Q ss_pred hcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcccCHHHHH
Q 018782 126 EANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANP-DEWSYNAILAYHCDRAEVNMAL 204 (350)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~ 204 (350)
..++...+...+++..+.. +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1111222344444443332 1233444444444444444444444444444432221 1233444444444444444444
Q ss_pred HHHHH
Q 018782 205 RLITR 209 (350)
Q Consensus 205 ~~~~~ 209 (350)
..|++
T Consensus 165 ~~y~~ 169 (176)
T 2r5s_A 165 SKYRR 169 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.17 E-value=2.1e-10 Score=82.76 Aligned_cols=143 Identities=8% Similarity=-0.040 Sum_probs=73.1
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 018782 51 VRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDI 130 (350)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 130 (350)
..++...|++++|+..++....... -+...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..++...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3444455566666666665544311 123334455566666666666666666665542 23445556666666666666
Q ss_pred hHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHhcc
Q 018782 131 HSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQL-LDEMIERGANPDEWSYNAILAYHCDR 197 (350)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~ 197 (350)
++|...|++..+.. +-+..++..+..+|.+.|++++|... +++..+..+. +..+|......+...
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHh
Confidence 66666666655543 23455555555666666665544333 3555554322 344444444443333
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.16 E-value=2.2e-09 Score=87.35 Aligned_cols=200 Identities=7% Similarity=0.003 Sum_probs=115.3
Q ss_pred ccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 018782 22 KRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGM 101 (350)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 101 (350)
..|++++|.+++++..+..+.. .+...++++.|...|.+. ...|...|++++|...
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 3577888888888876643321 111247778887777764 3456677888888888
Q ss_pred HHHHHhC----CCCC-CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----CCCc-cHHHHHHHHHHHHccCCHHHHHHH
Q 018782 102 LREMRSI----GAEP-DAFSYSIFIHAFCEANDIHSVFRVLDSMKRY----NLVP-NVFTYNCIIRKLCKNEKVEEAYQL 171 (350)
Q Consensus 102 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 171 (350)
|.+..+. +-.. -..+|+.+..+|...|++++|+..|++..+. |-+. ...++..+..+|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 8877642 1100 1336677777777778888888877766432 2111 13456666666666 777777777
Q ss_pred HHHHHHcCCCC-C----HHHHHHHHHHHhcccCHHHHHHHHHHHHhCC----CCCC-hhHHHHHHHHHHHcCCHhHHHHH
Q 018782 172 LDEMIERGANP-D----EWSYNAILAYHCDRAEVNMALRLITRMTKEN----VMPD-RHTYNMVLKLLVRVGRFDRATEV 241 (350)
Q Consensus 172 ~~~~~~~~~~~-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 241 (350)
|++..+..... + ..++..+...+...|++++|+..+++..... ..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77665431110 0 2345555555666666666666666554421 0000 11334444455555666666666
Q ss_pred HHHHH
Q 018782 242 WESME 246 (350)
Q Consensus 242 ~~~~~ 246 (350)
|++..
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66555
No 112
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.15 E-value=9.5e-09 Score=91.78 Aligned_cols=233 Identities=11% Similarity=0.090 Sum_probs=177.5
Q ss_pred HHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHH-HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 018782 27 KVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEAR-KLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREM 105 (350)
Q Consensus 27 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 105 (350)
+.+..+|+++....|..+..|...+..+...|+.++|. ++|++.... .|.+...|...+....+.|+++.|.++|+.+
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44667888888878889999999999999999999996 999998875 4557777888888889999999999999998
Q ss_pred HhCCC---------CCC------------HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC-CCCccHHHHHHHHHHHHcc-
Q 018782 106 RSIGA---------EPD------------AFSYSIFIHAFCEANDIHSVFRVLDSMKRY-NLVPNVFTYNCIIRKLCKN- 162 (350)
Q Consensus 106 ~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~- 162 (350)
.+... .|+ ...|...+....+.|+.+.|..+|....+. + ..+...|...+..-.+.
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence 86310 132 236777788888889999999999999775 2 12334444333333344
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCC--ChhHHHHHHHHHHHcCCHhHHHH
Q 018782 163 EKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMP--DRHTYNMVLKLLVRVGRFDRATE 240 (350)
Q Consensus 163 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~ 240 (350)
++.+.|..+|+...+.. ..+...|...+......|+.+.|..+|+........+ ....|...+..-.+.|+.+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 45899999999988873 3366677788888888899999999999988864321 34578888888888999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHH
Q 018782 241 VWESMEKRGFYPSVSTYSVMVHGL 264 (350)
Q Consensus 241 ~~~~~~~~~~~p~~~~~~~ll~~~ 264 (350)
+.+++.+. .|+......++.-|
T Consensus 563 v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 563 LEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHh--CCCCcHHHHHHHHh
Confidence 99999986 45655555556554
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.13 E-value=4.6e-09 Score=93.21 Aligned_cols=155 Identities=7% Similarity=-0.021 Sum_probs=120.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 018782 57 VGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRV 136 (350)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 136 (350)
.|++++|++.|++..+... .+...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999999887643 378899999999999999999999999999864 34677889999999999999999999
Q ss_pred HHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc---cCHHHHHHHHHHHHhC
Q 018782 137 LDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDR---AEVNMALRLITRMTKE 213 (350)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~ 213 (350)
+++..+.. +.+...+..+..++.+.|++++|.+.+++..+.... +...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99998865 456788999999999999999999999999988543 677888899999999 9999999999999886
Q ss_pred CC
Q 018782 214 NV 215 (350)
Q Consensus 214 ~~ 215 (350)
+.
T Consensus 158 ~p 159 (568)
T 2vsy_A 158 GV 159 (568)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.13 E-value=3.5e-09 Score=86.20 Aligned_cols=227 Identities=14% Similarity=0.061 Sum_probs=157.3
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 018782 56 DVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFR 135 (350)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 135 (350)
..|++++|.+++++..+... .. + +...++++.|...|.+. ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 35678888888888776421 11 0 11157888888887765 456778899999999
Q ss_pred HHHHHhhC----CCC-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC---CCC--HHHHHHHHHHHhcccCHHHHHH
Q 018782 136 VLDSMKRY----NLV-PNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA---NPD--EWSYNAILAYHCDRAEVNMALR 205 (350)
Q Consensus 136 ~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~~~~~ll~~~~~~~~~~~a~~ 205 (350)
.|.+..+. +-. .-..+|+.+..+|...|++++|...+++..+... .+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99887542 211 1245788889999999999999999998765411 111 3567778888888 99999999
Q ss_pred HHHHHHhCCCCC-----ChhHHHHHHHHHHHcCCHhHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHhhccCcHHHHH
Q 018782 206 LITRMTKENVMP-----DRHTYNMVLKLLVRVGRFDRATEVWESMEKR----GFYPS-VSTYSVMVHGLCKKKGKLEEAC 275 (350)
Q Consensus 206 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~ll~~~~~~~~~~~~a~ 275 (350)
.+++........ ...++..+..++...|++++|...|++..+. +..+. ...+..+...+... |++++|.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~-g~~~~A~ 215 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHR-ADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999977642111 1457888999999999999999999998753 11111 12444455555544 9999999
Q ss_pred HHHHHHHhCCCCC--C---HHHHHHHHHHHHcCCChhHHHHH
Q 018782 276 KYFEMMVDEGIPP--Y---SSTVEMLRNRLVGLGFLDIIEIL 312 (350)
Q Consensus 276 ~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~a~~~ 312 (350)
..|++.. .. |. + ......++.++ ..|+.+.+..+
T Consensus 216 ~~~~~al-~~-p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SI-PGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TS-TTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CC-CCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999998 43 21 1 12345556655 57887777664
No 115
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.09 E-value=3.2e-07 Score=74.66 Aligned_cols=177 Identities=7% Similarity=0.016 Sum_probs=127.9
Q ss_pred HHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-C-CH
Q 018782 19 ALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVG-ELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA-G-NI 95 (350)
Q Consensus 19 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~ 95 (350)
.....+..++|+++++.+....|.+..+|+.--.++...| .+++++++++.+....++ +..+|+.-..++... + ++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 3344555678999999988877888888888888888888 589999999999887655 788888877777766 6 78
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHh--------HHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC---
Q 018782 96 DEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIH--------SVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK--- 164 (350)
Q Consensus 96 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 164 (350)
++++++++.+.+.. +-|..+|+.-.-.....+.++ ++++.++++.+.. +-|..+|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 142 VSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccccc
Confidence 88889999888764 346667766555555555555 7788888877765 4477777777777766665
Q ss_pred ----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC
Q 018782 165 ----VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAE 199 (350)
Q Consensus 165 ----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 199 (350)
++++++.+.++....+. |...|+-+-..+.+.|+
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 57777777777776544 66667665555544443
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.05 E-value=3.9e-08 Score=75.20 Aligned_cols=129 Identities=13% Similarity=-0.012 Sum_probs=100.0
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018782 12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK 91 (350)
Q Consensus 12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (350)
.+..+...+...|++++|...|++.. +++...+..+..++...|++++|+..|++..+.. +.+...+..+..++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS---SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 34556677778889999998888774 5577888888888888999999999998888764 3477888888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCC---------------CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782 92 AGNIDEAHGMLREMRSIGAEP---------------DAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN 144 (350)
Q Consensus 92 ~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 144 (350)
.|++++|+..|++..+..... ....+..+..++...|++++|...|+...+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999988888753211 12566777778888888888888888877654
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.02 E-value=3.1e-08 Score=80.01 Aligned_cols=202 Identities=10% Similarity=0.003 Sum_probs=143.0
Q ss_pred CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----HH
Q 018782 6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCP-VD----IL 80 (350)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 80 (350)
..|+..++..+...+...- ..++..-..........+...+..+...|++++|..++++..+.... |+ ..
T Consensus 42 ~~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~ 116 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPI-----IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ 116 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCT-----HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCH-----HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHH
Confidence 4688888888887775432 12222221111223445666688889999999999999998875322 22 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHhcCCHhHHHHHHHHHhh----C-CCCc-cH
Q 018782 81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAE-PD----AFSYSIFIHAFCEANDIHSVFRVLDSMKR----Y-NLVP-NV 149 (350)
Q Consensus 81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~ 149 (350)
.+..+...+...+++++|+..+++..+.... ++ ..+++.+...|...|++++|...|+++.+ . +..+ ..
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 3345777777888999999999999874322 22 23688899999999999999999998863 1 2122 23
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcccC-HHHHHHHHHHHHh
Q 018782 150 FTYNCIIRKLCKNEKVEEAYQLLDEMIER----GANPD-EWSYNAILAYHCDRAE-VNMALRLITRMTK 212 (350)
Q Consensus 150 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~ 212 (350)
.++..+..+|.+.|++++|...+++..+. +..+. ..+|..+..++...|+ +++|.+.+++...
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 47888999999999999999999987753 22222 5678888888999994 6999998888754
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.01 E-value=6.2e-08 Score=78.23 Aligned_cols=209 Identities=10% Similarity=0.059 Sum_probs=147.5
Q ss_pred HHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHH
Q 018782 30 HQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILA---HNSLLEAMCKAGNIDEAHGMLREM 105 (350)
Q Consensus 30 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~ 105 (350)
...+.++.. ...|+..+...+...+.-.- + .++. .....+... +...+..+...|++++|..++++.
T Consensus 31 ~~~~s~~e~g~~~~~~~~l~~i~~~l~~~~--~---~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~ 101 (293)
T 3u3w_A 31 QSEVSRIESGAVYPSMDILQGIAAKLQIPI--I---HFYE----VLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNE 101 (293)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHHHHTCCT--H---HHHH----TTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCcCH--H---HHhC----CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344555555 35688888888887775322 1 1221 112223333 334467888999999999999999
Q ss_pred HhCCC-CCCH----hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCC-cc----HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782 106 RSIGA-EPDA----FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLV-PN----VFTYNCIIRKLCKNEKVEEAYQLLDEM 175 (350)
Q Consensus 106 ~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 175 (350)
.+... .|+. ..+..+...+...+++++|+..+++..+.... ++ ..+++.+..+|...|++++|...++++
T Consensus 102 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 102 LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 87432 2221 13345777788888999999999999774222 22 346899999999999999999999998
Q ss_pred HHc-----CCCC-CHHHHHHHHHHHhcccCHHHHHHHHHHHHhC----CCCCC-hhHHHHHHHHHHHcCC-HhHHHHHHH
Q 018782 176 IER-----GANP-DEWSYNAILAYHCDRAEVNMALRLITRMTKE----NVMPD-RHTYNMVLKLLVRVGR-FDRATEVWE 243 (350)
Q Consensus 176 ~~~-----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~-~~~a~~~~~ 243 (350)
.+. +..+ ...++..+...|...|++++|...+++..+. +..+. ..+|..+..++.+.|+ +++|...++
T Consensus 182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 741 1111 2346788889999999999999999987653 22222 5678899999999995 699999998
Q ss_pred HHHh
Q 018782 244 SMEK 247 (350)
Q Consensus 244 ~~~~ 247 (350)
+...
T Consensus 262 ~Al~ 265 (293)
T 3u3w_A 262 KASF 265 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.01 E-value=4.6e-08 Score=74.84 Aligned_cols=129 Identities=11% Similarity=-0.079 Sum_probs=104.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 018782 46 TYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFC 125 (350)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (350)
.+..+...+...|++++|...|++.. +|+..++..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 45567778888999999999998774 5588889999999999999999999999988764 446678888899999
Q ss_pred hcCCHhHHHHHHHHHhhCCCCc----------------cHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 018782 126 EANDIHSVFRVLDSMKRYNLVP----------------NVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180 (350)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 180 (350)
..|++++|...|++..+.. +. ....+..+..++...|++++|...+++..+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999999999887743 11 236778888888899999999999988887643
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.01 E-value=1.1e-08 Score=73.39 Aligned_cols=103 Identities=8% Similarity=-0.033 Sum_probs=76.9
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 018782 40 FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSI 119 (350)
Q Consensus 40 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 119 (350)
.|.+...+..+...+.+.|++++|+..|++.....+ .+...|..+..++...|++++|+..|++..+.. +.+...+..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHH
Confidence 344566777777888888888888888888877643 367778888888888888888888888887753 235567777
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782 120 FIHAFCEANDIHSVFRVLDSMKRYN 144 (350)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~~ 144 (350)
+..++...|++++|...|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7788888888888888888777653
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.01 E-value=3e-08 Score=72.45 Aligned_cols=127 Identities=9% Similarity=0.005 Sum_probs=58.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 018782 46 TYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFC 125 (350)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (350)
.+..+...+...|++++|...|++..+... .+..++..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 344444444455555555555555444321 244444455555555555555555555554432 223444444555555
Q ss_pred hcCCHhHHHHHHHHHhhCCCCccHHHH--HHHHHHHHccCCHHHHHHHHHHH
Q 018782 126 EANDIHSVFRVLDSMKRYNLVPNVFTY--NCIIRKLCKNEKVEEAYQLLDEM 175 (350)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~ 175 (350)
..|++++|...+++..+.. +.+...+ ...+..+...|++++|...+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5555555555555554432 1122222 22222244455555555555443
No 122
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.00 E-value=3.9e-09 Score=84.65 Aligned_cols=99 Identities=17% Similarity=0.051 Sum_probs=75.1
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA 88 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (350)
+...+..+...+...|++++|...|+.+....|.+...|..+..++...|++++|+..+++..+... .+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 4556677777777888888888888887776667777888888888888888888888888777633 367777777788
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 018782 89 MCKAGNIDEAHGMLREMRSI 108 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~ 108 (350)
+...|++++|+..|++..+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888777653
No 123
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.00 E-value=2e-06 Score=74.52 Aligned_cols=297 Identities=8% Similarity=-0.010 Sum_probs=158.3
Q ss_pred CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHHHhc-CC-CCCHHHHH
Q 018782 7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGE-LSEARKLFDEMLER-KC-PVDILAHN 83 (350)
Q Consensus 7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~ 83 (350)
.--..+|...+..+-. |+++.+..+|++..... |+...|...+....+.+. .+....+|+..... |. +.+...|.
T Consensus 12 ~~aR~vyer~l~~~P~-~~~e~~~~iferal~~~-ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~ 89 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMS-KDYRSLESLFGRCLKKS-YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK 89 (493)
T ss_dssp CCHHHHHHHHHHHHHT-TCHHHHHHHHHHHSTTC-CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCC-CCHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 3344556666666654 78999999999987754 588888888887777663 45567778776653 42 33667777
Q ss_pred HHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH------------------------------------
Q 018782 84 SLLEAMC----KAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA------------------------------------ 123 (350)
Q Consensus 84 ~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------------------------------ 123 (350)
..+..+. ..++.+.+..+|++.+......-...|......
T Consensus 90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 90 EYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 7776544 245677888888888873211111112111110
Q ss_pred --------HHh--cCC---------HhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 018782 124 --------FCE--AND---------IHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDE 184 (350)
Q Consensus 124 --------~~~--~~~---------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 184 (350)
|.. .++ .+.+..+|+++.... +.+...|...+..+.+.|+++.|..++++.... + .+.
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P-~~~ 246 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-S-DGM 246 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C-CcH
Confidence 000 011 123445555555432 344556666666667777778888888777776 2 222
Q ss_pred HHHHHHHHHHhcccCHHHH-HHHHHHHHhCC--------CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH
Q 018782 185 WSYNAILAYHCDRAEVNMA-LRLITRMTKEN--------VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVS 255 (350)
Q Consensus 185 ~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 255 (350)
..|... ....+.++. ..+.+...... .......|...+....+.++.+.|..+|+.+ ... ..+..
T Consensus 247 ~l~~~y----~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~ 320 (493)
T 2uy1_A 247 FLSLYY----GLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPH 320 (493)
T ss_dssp HHHHHH----HHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHH
T ss_pred HHHHHH----HhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChH
Confidence 222211 111111111 01111100000 0001233455555555666777777777777 321 12333
Q ss_pred HHH--HHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782 256 TYS--VMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME 317 (350)
Q Consensus 256 ~~~--~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 317 (350)
.|. +.+.. ...++.+.|..+|+...+.. +.++..+...++...+.|+.+.|..+|+++.
T Consensus 321 v~i~~A~lE~--~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~ 381 (493)
T 2uy1_A 321 VFIYCAFIEY--YATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE 381 (493)
T ss_dssp HHHHHHHHHH--HHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHH--HHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 332 22221 12235777777777777653 3345555556666666777777777777653
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.00 E-value=2.9e-08 Score=69.02 Aligned_cols=94 Identities=12% Similarity=0.021 Sum_probs=47.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782 13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA 92 (350)
Q Consensus 13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (350)
+......+.+.|++++|++.|++.....|.++..|..+..++...|++++|+..|++.++.+.. +...|..+..++...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHC
Confidence 3444445555555555555555544444445555555555555555555555555555444222 444455555555555
Q ss_pred CCHHHHHHHHHHHHh
Q 018782 93 GNIDEAHGMLREMRS 107 (350)
Q Consensus 93 ~~~~~a~~~~~~~~~ 107 (350)
|++++|++.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.99 E-value=2e-08 Score=69.82 Aligned_cols=98 Identities=8% Similarity=0.013 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 018782 44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA 123 (350)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (350)
...+......+.+.|++++|++.|++.++..+ .+..+|..+..++.+.|++++|+..+++.++.. +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 44555666666666666666666666665532 256666666666666666666666666666542 2344556666666
Q ss_pred HHhcCCHhHHHHHHHHHhhC
Q 018782 124 FCEANDIHSVFRVLDSMKRY 143 (350)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~ 143 (350)
+...|++++|...|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 66666666666666666554
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.98 E-value=1.9e-08 Score=70.07 Aligned_cols=117 Identities=12% Similarity=0.022 Sum_probs=57.6
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAM 89 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (350)
...+..+...+...|+++.|...|+.+....|.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 33444444555555555555555555544444455555555555555555555555555555442 22344555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 018782 90 CKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN 128 (350)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (350)
...|++++|...|++..+.. +.+...+..+..++...|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 55555555555555554432 123334444444444443
No 127
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.98 E-value=2e-06 Score=69.94 Aligned_cols=177 Identities=8% Similarity=0.028 Sum_probs=127.0
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-C-C
Q 018782 53 GLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG-NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEA-N-D 129 (350)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~ 129 (350)
.....+..++|++++++++..+.. +..+|+.--..+...+ .+++++++++.+.... +-+..+|+.-...+... + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 334455667899999999988655 7788888777777788 5999999999999874 34666777766666666 6 7
Q ss_pred HhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC--
Q 018782 130 IHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVE--------EAYQLLDEMIERGANPDEWSYNAILAYHCDRAE-- 199 (350)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-- 199 (350)
.++++.+++.+.+.. +.+..+|+.-.-++.+.|.++ ++++.++++.+..+. +...|+.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 888999999988765 457777776665555555555 888888888887655 77777777777666664
Q ss_pred -----HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 018782 200 -----VNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGR 234 (350)
Q Consensus 200 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 234 (350)
++++++.+++.....+ -|...|+.+-..+.+.|.
T Consensus 219 ~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 5677777777776543 456666665555555554
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.97 E-value=3.4e-08 Score=69.13 Aligned_cols=100 Identities=12% Similarity=0.020 Sum_probs=59.5
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782 8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLE 87 (350)
Q Consensus 8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 87 (350)
.+...+..+...+...|++++|...|+......+.+...+..+..++...|++++|...+++..+... .+...+..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 34445555556666666666666666666554455566666666666666666666666666655422 24555666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 018782 88 AMCKAGNIDEAHGMLREMRSI 108 (350)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~ 108 (350)
++...|++++|.+.|++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 666666666666666665553
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.97 E-value=8.7e-09 Score=73.96 Aligned_cols=103 Identities=11% Similarity=-0.046 Sum_probs=92.6
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA 88 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (350)
+...+..+...+.+.|++++|...|+++....|.++..|..+..++...|++++|+..|++..+..+. ++..|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 34467778889999999999999999999888999999999999999999999999999999988544 78899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH
Q 018782 89 MCKAGNIDEAHGMLREMRSIGAEPDA 114 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~ 114 (350)
+...|++++|+..|++..+.. |+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~--~~~ 137 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS--NDE 137 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCH
Confidence 999999999999999999853 554
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.97 E-value=1.2e-08 Score=81.82 Aligned_cols=195 Identities=7% Similarity=-0.010 Sum_probs=102.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHH
Q 018782 78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIR 157 (350)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (350)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44555666666666666666666666666542 2245566666666666677777777776666543 335566666667
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhH
Q 018782 158 KLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDR 237 (350)
Q Consensus 158 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 237 (350)
++...|++++|...|++..+.... +...+...+....+. ..+.. +..........+......+.. + ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 777777777777777666554211 000111111111111 11111 111222223334443333322 2 2577788
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHhh-ccCcHHHHHHHHHHHHh
Q 018782 238 ATEVWESMEKRGFYPSVSTYSVMVHGLCK-KKGKLEEACKYFEMMVD 283 (350)
Q Consensus 238 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~~a~~~~~~~~~ 283 (350)
|.+.++...+. .|+......-+..... ..+.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88777777654 4554444333333222 22567778888877654
No 131
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.97 E-value=1.1e-07 Score=76.67 Aligned_cols=202 Identities=10% Similarity=-0.012 Sum_probs=140.2
Q ss_pred CCcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC-----HH
Q 018782 6 IKPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD-----IL 80 (350)
Q Consensus 6 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~ 80 (350)
..|+..+...+...+... .+. ++.......+.....+...+..+...|++++|.+.+.+..+...... ..
T Consensus 42 ~~~~~~~l~~l~~~l~~~--~~~---l~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~ 116 (293)
T 2qfc_A 42 VYPSMDILQGIAAKLQIP--IIH---FYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ 116 (293)
T ss_dssp SCCCHHHHHHHTTTSCCC--THH---HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcC--HHH---HhccccccchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHH
Confidence 357776665555444322 121 12221111233455667788888999999999999998887633211 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CC--HhhHHHHHHHHHhcCCHhHHHHHHHHHhh---C-CCCc--cH
Q 018782 81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAE---PD--AFSYSIFIHAFCEANDIHSVFRVLDSMKR---Y-NLVP--NV 149 (350)
Q Consensus 81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~ 149 (350)
.+..+...+...|++++|+..+++..+.... +. ..+++.+...|...|++++|...|++..+ . +..+ ..
T Consensus 117 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~ 196 (293)
T 2qfc_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchH
Confidence 3455677788889999999999998864221 11 34788899999999999999999998862 2 1111 22
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHhcccCHHHH-HHHHHHHHh
Q 018782 150 FTYNCIIRKLCKNEKVEEAYQLLDEMIERG----ANP-DEWSYNAILAYHCDRAEVNMA-LRLITRMTK 212 (350)
Q Consensus 150 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~ 212 (350)
.++..+..+|...|++++|...+++..+.. ... -..+|..+..++...|++++| ...++....
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 588889999999999999999999877542 111 156788888999999999999 777777653
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.97 E-value=4.4e-08 Score=67.59 Aligned_cols=96 Identities=21% Similarity=0.196 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018782 11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMC 90 (350)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (350)
..+..+...+...|++++|.+.|+++....+.+..++..+..++...|++++|...++++.+.. +.+..++..+..++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 3444455555555555555555555544444445555555555555555555555555555442 224445555555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 018782 91 KAGNIDEAHGMLREMRS 107 (350)
Q Consensus 91 ~~~~~~~a~~~~~~~~~ 107 (350)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555555544
No 133
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.95 E-value=1.1e-08 Score=77.69 Aligned_cols=157 Identities=13% Similarity=0.039 Sum_probs=98.5
Q ss_pred HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhcCCH
Q 018782 21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER----KC-PVDILAHNSLLEAMCKAGNI 95 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~ 95 (350)
...|++++|.++++.+.........++..+...+...|++++|...+++..+. +. +....++..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45788888888555554433345677888888888888888888888877652 11 12345667777778888888
Q ss_pred HHHHHHHHHHHhC----CCCC--CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----CCC-ccHHHHHHHHHHHHccCC
Q 018782 96 DEAHGMLREMRSI----GAEP--DAFSYSIFIHAFCEANDIHSVFRVLDSMKRY----NLV-PNVFTYNCIIRKLCKNEK 164 (350)
Q Consensus 96 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~ 164 (350)
++|...+++..+. +..+ ....+..+...+...|++++|...+++.... +.+ ....++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888887776542 1111 1234666677777778888887777766431 111 112334566667777777
Q ss_pred HHHHHHHHHHHHH
Q 018782 165 VEEAYQLLDEMIE 177 (350)
Q Consensus 165 ~~~a~~~~~~~~~ 177 (350)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766554
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.95 E-value=2.7e-09 Score=87.95 Aligned_cols=150 Identities=11% Similarity=-0.026 Sum_probs=93.6
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHH
Q 018782 24 KHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD--------------ILAHNSLLEAM 89 (350)
Q Consensus 24 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 89 (350)
+++++|...|+......+.+...+..+...+.+.|++++|+..|++..+...... ..+|..+..++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555444333334566777777777778888888888887776643321 46666677777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHH-
Q 018782 90 CKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEA- 168 (350)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a- 168 (350)
.+.|++++|+..+++.++.. +.+...+..+..++...|++++|...|++..+.. +.+..++..+..++.+.|+.++|
T Consensus 207 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776653 2355566666667777777777777777666543 33455666666666666666666
Q ss_pred HHHHHHH
Q 018782 169 YQLLDEM 175 (350)
Q Consensus 169 ~~~~~~~ 175 (350)
...++.|
T Consensus 285 ~~~~~~~ 291 (336)
T 1p5q_A 285 KKLYANM 291 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344444
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.95 E-value=7.2e-08 Score=70.39 Aligned_cols=93 Identities=12% Similarity=-0.045 Sum_probs=45.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018782 14 DQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG 93 (350)
Q Consensus 14 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 93 (350)
..+...+...|+++.|...|+......|.+..++..+..++...|++++|...+++..+.. +.+...+..+..++...|
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 3344444445555555555555444444444555555555555555555555555544442 223444444555555555
Q ss_pred CHHHHHHHHHHHHh
Q 018782 94 NIDEAHGMLREMRS 107 (350)
Q Consensus 94 ~~~~a~~~~~~~~~ 107 (350)
++++|...|++..+
T Consensus 96 ~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 96 KFRAALRDYETVVK 109 (166)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 55555555555444
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.94 E-value=5.9e-07 Score=72.45 Aligned_cols=168 Identities=9% Similarity=0.019 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCC---Ccc--
Q 018782 79 ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDA-----FSYSIFIHAFCEANDIHSVFRVLDSMKRYNL---VPN-- 148 (350)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-- 148 (350)
...+...+..+...|++++|.+.+....+.....+. ..+..+...+...|++++|...+++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 345556677888899999999998888775322111 1233455666777888888888888764321 111
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHH---cCCC-C--CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCC----CCC-
Q 018782 149 VFTYNCIIRKLCKNEKVEEAYQLLDEMIE---RGAN-P--DEWSYNAILAYHCDRAEVNMALRLITRMTKEN----VMP- 217 (350)
Q Consensus 149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~-~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~- 217 (350)
..+++.+...|...|++++|...+++..+ .... + ...++..+...|...|++++|...+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 44777888888888888888888888763 2111 1 11467777788888888888888888765431 111
Q ss_pred ChhHHHHHHHHHHHcCCHhHH-HHHHHHHH
Q 018782 218 DRHTYNMVLKLLVRVGRFDRA-TEVWESME 246 (350)
Q Consensus 218 ~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 246 (350)
-..+|..+..+|...|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 145677788888888888888 66676654
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.93 E-value=1.1e-08 Score=75.86 Aligned_cols=122 Identities=7% Similarity=0.071 Sum_probs=83.9
Q ss_pred HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 018782 21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA-MCKAGNI--DE 97 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 97 (350)
...|++++|...++......|.+...+..+..++...|++++|...|++..+... .+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHH
Confidence 4567777777777777666677777777888888888888888888887776533 256667777777 6677777 77
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782 98 AHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN 144 (350)
Q Consensus 98 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 144 (350)
|...++++.+.. +.+...+..+...+...|++++|...|+++.+..
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777777777653 2345666677777777777777777777776643
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.89 E-value=1.4e-07 Score=65.01 Aligned_cols=98 Identities=18% Similarity=0.220 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 018782 44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA 123 (350)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (350)
...+..+...+...|++++|.+.++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4455556666666666666666666665542 2245555666666666666666666666665542 2344455555555
Q ss_pred HHhcCCHhHHHHHHHHHhhC
Q 018782 124 FCEANDIHSVFRVLDSMKRY 143 (350)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~ 143 (350)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 66666666666666555543
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.88 E-value=6.4e-08 Score=67.38 Aligned_cols=120 Identities=13% Similarity=0.031 Sum_probs=74.7
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 018782 42 PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFI 121 (350)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 121 (350)
.+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 344566666677777777777777777766653 2356666667777777777777777777766642 23455666666
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC
Q 018782 122 HAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK 164 (350)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 164 (350)
..+...|++++|...|++..+.. +.+...+..+..++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 66666777777777776665543 2344555555555555444
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.88 E-value=8.5e-08 Score=67.04 Aligned_cols=118 Identities=12% Similarity=-0.022 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 018782 41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120 (350)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 120 (350)
+.+...+..+...+...|++++|...|++..+... .+...+..+..++...|++++|+..+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 44556666677777777777777777777666532 256666666677777777777777777766642 2345566666
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHc
Q 018782 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCK 161 (350)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (350)
..++...|++++|...|++..+.. +.+...+..+..++..
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 666666677777777766665543 2233444444444443
No 141
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.88 E-value=7.2e-09 Score=78.49 Aligned_cols=152 Identities=12% Similarity=-0.037 Sum_probs=82.3
Q ss_pred HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC---------------HH
Q 018782 16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD---------------IL 80 (350)
Q Consensus 16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~ 80 (350)
.+......|+++.+.+.|+.-....+.....+..+...+...|++++|+..|++..+...... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 334444556666666666654333334556677777788888888888888888776532211 15
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 018782 81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLC 160 (350)
Q Consensus 81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (350)
++..+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+.. +.+..++..+..++.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH
Confidence 56666666666666666666666666542 2344555666666666666666666666665543 234445555555555
Q ss_pred ccCCHHHHH
Q 018782 161 KNEKVEEAY 169 (350)
Q Consensus 161 ~~g~~~~a~ 169 (350)
..++.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 444444443
No 142
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.87 E-value=9.6e-06 Score=70.24 Aligned_cols=291 Identities=10% Similarity=0.010 Sum_probs=178.6
Q ss_pred cCHhhHHHHHHHHHccCC-hHHHHHHHHHhhh--c-CCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCCH
Q 018782 8 PSIYDLDQLLHALCKRKH-VKVAHQFFDNAKH--E-FTPTVKTYSILVRGLGD----VGELSEARKLFDEMLERKCPVDI 79 (350)
Q Consensus 8 p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~--~-~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 79 (350)
|+...|...+....+.++ .+....+|+.+.. | .+.+...|...+..+.. .++++.+.++|++.+......-.
T Consensus 45 ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~ 124 (493)
T 2uy1_A 45 YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLS 124 (493)
T ss_dssp CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHH
T ss_pred CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHH
Confidence 677788777776666553 3556777777654 2 34566777777776542 35677788888888763111111
Q ss_pred H------------------------------------------------HHHHHHHHHHhc--CC-----HHHHHHHHHH
Q 018782 80 L------------------------------------------------AHNSLLEAMCKA--GN-----IDEAHGMLRE 104 (350)
Q Consensus 80 ~------------------------------------------------~~~~l~~~~~~~--~~-----~~~a~~~~~~ 104 (350)
. .|...+..-... +- .+.+..+|++
T Consensus 125 ~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 125 ELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence 1 111111111111 00 2345667777
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-----
Q 018782 105 MRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG----- 179 (350)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 179 (350)
+.... +-+...|...+..+.+.|+.+.|..++++.... +.+...+.. |....+.++. ++.+.+.-
T Consensus 205 al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 205 ILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----
T ss_pred HHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhcc
Confidence 77653 445677888888888999999999999999887 444433332 2221111222 22222210
Q ss_pred ----CCC---CHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc-CCHhHHHHHHHHHHhcCCC
Q 018782 180 ----ANP---DEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRV-GRFDRATEVWESMEKRGFY 251 (350)
Q Consensus 180 ----~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~ 251 (350)
..+ ....|...+....+.++.+.|..+|+.+ .. ...+...|...+..-... ++.+.|..+|+...+.-
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-- 350 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-- 350 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--
Confidence 001 1245667777777788999999999999 32 223444554333333333 47999999999998752
Q ss_pred CC-HHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhc
Q 018782 252 PS-VSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMER 318 (350)
Q Consensus 252 p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 318 (350)
|+ ...+...+.-.. ..|+.+.|..+|+++. .....|...+..-...|+.+.+..++++...
T Consensus 351 ~~~~~~~~~yid~e~-~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLL-RIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TTCHHHHHHHHHHHH-HHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33 444455555433 4499999999999972 3577788888777778999999998888763
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.86 E-value=5.8e-08 Score=73.56 Aligned_cols=119 Identities=11% Similarity=0.001 Sum_probs=53.6
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHhcCCH
Q 018782 56 DVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI----GAE-PDAFSYSIFIHAFCEANDI 130 (350)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~ 130 (350)
..|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644433321 2224455555666666666666666666655431 111 1123444445555555555
Q ss_pred hHHHHHHHHHhhC----CCCc--cHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782 131 HSVFRVLDSMKRY----NLVP--NVFTYNCIIRKLCKNEKVEEAYQLLDEM 175 (350)
Q Consensus 131 ~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 175 (350)
++|...+++..+. +-.+ ...++..+...+...|++++|...+++.
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5555555544321 1000 1223344444444445555554444444
No 144
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.3e-07 Score=65.71 Aligned_cols=97 Identities=12% Similarity=0.018 Sum_probs=63.5
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAM 89 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (350)
...+..+...+...|++++|...|++.....|.+...|..+..++...|++++|+..+++..+.... +...|..+..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 3455556666666777777777777666655666666666777777777777777777666665322 566666666666
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 018782 90 CKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~ 107 (350)
...|++++|...|++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 666777777666666655
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.85 E-value=4.3e-08 Score=72.67 Aligned_cols=122 Identities=8% Similarity=0.088 Sum_probs=90.6
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHhcCCH--h
Q 018782 55 GDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA-FCEANDI--H 131 (350)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 131 (350)
...|++++|...+++..+.. +.+...|..+..++...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45678888888888877764 3377888888888888888888888888887753 3356667777777 6778887 8
Q ss_pred HHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 018782 132 SVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERG 179 (350)
Q Consensus 132 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 179 (350)
+|...+++..+.. +.+...+..+..++...|++++|...++++.+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888888887764 3456777778888888888888888888888764
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.84 E-value=1.1e-07 Score=78.27 Aligned_cols=130 Identities=9% Similarity=-0.058 Sum_probs=111.9
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCC---------------HHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPT---------------VKTYSILVRGLGDVGELSEARKLFDEMLERK 74 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (350)
...+..+...+.+.|++++|...|++.....|.+ ..+|..+..++.+.|++++|+..+++.++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4567778889999999999999999988765655 5899999999999999999999999999885
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH-HHHHHHHh
Q 018782 75 CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSV-FRVLDSMK 141 (350)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~ 141 (350)
. .+...|..+..++...|++++|+..|++..+.. +.+...+..+..++...|+.+++ ...|+.|.
T Consensus 227 p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 488999999999999999999999999999864 34667888899999999999888 44666654
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.84 E-value=2.7e-08 Score=71.31 Aligned_cols=107 Identities=10% Similarity=-0.054 Sum_probs=61.3
Q ss_pred HHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 018782 34 DNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPD 113 (350)
Q Consensus 34 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 113 (350)
+.+....|.+...+..+...+...|++++|+..|++...... .+...|..+..++...|++++|+..|++..... +.+
T Consensus 11 ~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~ 88 (148)
T 2vgx_A 11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXE 88 (148)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 333333344455555666666666666666666666655532 255566666666666666666666666665542 223
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 018782 114 AFSYSIFIHAFCEANDIHSVFRVLDSMKR 142 (350)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 142 (350)
...+..+..++...|++++|...|++..+
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555566666666666666666665544
No 148
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.84 E-value=6.9e-07 Score=70.28 Aligned_cols=187 Identities=10% Similarity=-0.071 Sum_probs=103.6
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--------------
Q 018782 56 DVGELSEARKLFDEMLERKCPVDILAHNSL-------LEAMCKAGNIDEAHGMLREMRSIGAEPDA-------------- 114 (350)
Q Consensus 56 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------- 114 (350)
..++.+.|.+.|.++.+..+. ....|..+ ...+...++..+++..+..... +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 467777777777777776433 56666665 3444444444555544444433 12211
Q ss_pred --------hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--H
Q 018782 115 --------FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPD--E 184 (350)
Q Consensus 115 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~ 184 (350)
.....+...+...|++++|.+.|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 122334555666677777777776665543 333244455556666777777777776443321 110 2
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC--hhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782 185 WSYNAILAYHCDRAEVNMALRLITRMTKENVMPD--RHTYNMVLKLLVRVGRFDRATEVWESMEKR 248 (350)
Q Consensus 185 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 248 (350)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2455556666667777777777766654322132 234445556666667777777777776654
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.82 E-value=7.4e-08 Score=69.04 Aligned_cols=99 Identities=13% Similarity=0.014 Sum_probs=89.1
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA 88 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (350)
+...+..+...+...|++++|...|+.+....|.+...|..+..++...|++++|+..|++...... .+...+..+..+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 4455677778899999999999999999887888999999999999999999999999999998754 378889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 018782 89 MCKAGNIDEAHGMLREMRSI 108 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~ 108 (350)
+...|++++|...|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999875
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.82 E-value=3.2e-07 Score=62.45 Aligned_cols=98 Identities=13% Similarity=-0.036 Sum_probs=58.7
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAM 89 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (350)
+..+..+...+...|++++|...|+......|.+...+..+..++...|++++|...+++..+... .+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 344555556666666666666666666554555566666666666666666666666666655432 2455556666666
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 018782 90 CKAGNIDEAHGMLREMRSI 108 (350)
Q Consensus 90 ~~~~~~~~a~~~~~~~~~~ 108 (350)
...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666666554
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.81 E-value=7e-08 Score=68.66 Aligned_cols=92 Identities=12% Similarity=-0.020 Sum_probs=47.1
Q ss_pred HHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 018782 15 QLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGN 94 (350)
Q Consensus 15 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (350)
.+...+...|++++|...|+.+....|.+...|..+..++...|++++|+..|++.....+ .+...+..+..++...|+
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCC
Confidence 3344445555555555555555444444555555555555555555555555555554432 244444555555555555
Q ss_pred HHHHHHHHHHHHh
Q 018782 95 IDEAHGMLREMRS 107 (350)
Q Consensus 95 ~~~a~~~~~~~~~ 107 (350)
+++|...|++..+
T Consensus 102 ~~~A~~~~~~al~ 114 (142)
T 2xcb_A 102 LDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 152
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.81 E-value=2e-07 Score=73.37 Aligned_cols=198 Identities=9% Similarity=-0.039 Sum_probs=147.7
Q ss_pred ccCChHHHHHHHHHhhhcCCCCHHHHHHH-------HHHHhccCCHHHHHHHHHHHHhc------------CCC------
Q 018782 22 KRKHVKVAHQFFDNAKHEFTPTVKTYSIL-------VRGLGDVGELSEARKLFDEMLER------------KCP------ 76 (350)
Q Consensus 22 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~------------~~~------ 76 (350)
..++...|.+.|.++....|.....|..+ ...+...++..+++..++.-... |.-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 68999999999999999888899999888 56666666666666666655441 110
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc--HHHH
Q 018782 77 --VDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN--VFTY 152 (350)
Q Consensus 77 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 152 (350)
.-......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~ 174 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAG 174 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHH
Confidence 013344557788899999999999999998754 444366667778999999999999998665532 121 3467
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHH
Q 018782 153 NCIIRKLCKNEKVEEAYQLLDEMIERGANPD--EWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNM 224 (350)
Q Consensus 153 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 224 (350)
..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++.... |+...+..
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~a 246 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAA 246 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHH
Confidence 7888999999999999999999885433243 3355667777889999999999999999864 44443333
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.81 E-value=1.1e-05 Score=65.43 Aligned_cols=230 Identities=11% Similarity=0.071 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC--C
Q 018782 62 EARKLFDEMLERKCPVDILAHNSLLEAMCKAGN----------IDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN--D 129 (350)
Q Consensus 62 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 129 (350)
+|+++++.++..++. +..+|+.--..+...+. +++++.+++.+.... +-+..+|+.-.-.+...+ +
T Consensus 48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCccc
Confidence 556666666555332 44444443333222222 455666666665542 234445555544454555 3
Q ss_pred HhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-----------
Q 018782 130 IHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK-VEEAYQLLDEMIERGANPDEWSYNAILAYHCDR----------- 197 (350)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------- 197 (350)
+++++.+++.+.+.. +-|..+|+.-.-++...|. ++++++.++.+.+..+. |...|+.....+...
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~ 203 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 203 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------C
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccc
Confidence 566666666665544 3355555555555555555 36666666666665444 555555444433332
Q ss_pred ---cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc-----------CCHhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 198 ---AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRV-----------GRFDRATEVWESMEKRGFYPSVSTYSVMVHG 263 (350)
Q Consensus 198 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 263 (350)
+.++++++.+.......+ -|...|+.+-..+.+. +.++++.+.++++.+. .||. .|..+-.+
T Consensus 204 ~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~ 279 (331)
T 3dss_A 204 LPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTII 279 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHH
Confidence 345666666666665432 3455555443333333 3467888888888765 4553 22221111
Q ss_pred H----hhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 018782 264 L----CKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL 300 (350)
Q Consensus 264 ~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (350)
. ....|..+++...+.++++.+ |....-|..+...+
T Consensus 280 ~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~~~ 319 (331)
T 3dss_A 280 LLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHHHH
Confidence 1 112367788888888888776 44555555554433
No 154
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.79 E-value=2.1e-05 Score=63.70 Aligned_cols=226 Identities=10% Similarity=0.035 Sum_probs=120.2
Q ss_pred hcCCH-HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC----------HhHHHHHHHHHhhCCCCccHHHHHHHHHHH
Q 018782 91 KAGNI-DEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAND----------IHSVFRVLDSMKRYNLVPNVFTYNCIIRKL 159 (350)
Q Consensus 91 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 159 (350)
+.|.+ ++|+++++.++..++ -+...|+.--..+...+. +++++.+++.+.... +.+..+|+.-.-++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34444 366777777766431 123334433333322222 456677777766554 34566666555555
Q ss_pred HccC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC-HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHc----
Q 018782 160 CKNE--KVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAE-VNMALRLITRMTKENVMPDRHTYNMVLKLLVRV---- 232 (350)
Q Consensus 160 ~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 232 (350)
.+.| .+++++.+++.+.+..+. +..+|+.-.-.+...|. ++++++.+..+.+.++ -|...|+.....+...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhcc
Confidence 5555 366777777777766544 56666655555555565 4667777777666553 3555565555554444
Q ss_pred ----------CCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhcc----------CcHHHHHHHHHHHHhCCCCCCHHH
Q 018782 233 ----------GRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKK----------GKLEEACKYFEMMVDEGIPPYSST 292 (350)
Q Consensus 233 ----------~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~ 292 (350)
+.++++.+.+........ -|...|+.+-..+.... +.++++++.++++.+.. |-+.-.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~-pd~~w~ 274 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE-PENKWC 274 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-cccchH
Confidence 346667777776665422 13444433322222221 24667777777776654 223222
Q ss_pred HHHHH---HHHHcCCChhHHHHHHHHhhccCCC
Q 018782 293 VEMLR---NRLVGLGFLDIIEILADKMERSTSC 322 (350)
Q Consensus 293 ~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~ 322 (350)
+..++ ......|..+++..++.++.+.+|.
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 22221 1222456666677777777665544
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.79 E-value=1.5e-07 Score=65.39 Aligned_cols=95 Identities=18% Similarity=0.120 Sum_probs=48.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC--CCC----HHHHHHHH
Q 018782 13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKC--PVD----ILAHNSLL 86 (350)
Q Consensus 13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l~ 86 (350)
+..+...+.+.|++++|+..|++.....|.+...|..+..+|...|++++|++.+++.++... .++ ..+|..+.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 444555555555555555555555554455555555555555555555555555555543211 011 12344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 018782 87 EAMCKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~ 107 (350)
.++...|++++|++.|++.++
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 455555555555555555444
No 156
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.79 E-value=1.4e-07 Score=63.66 Aligned_cols=98 Identities=12% Similarity=-0.021 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHhhHHHHH
Q 018782 44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEP--DAFSYSIFI 121 (350)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 121 (350)
...+..+...+...|++++|...|++..+... .+...+..+..++...|++++|...+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 33444444444445555555555554444321 234444444555555555555555555554432 11 234444445
Q ss_pred HHHHhc-CCHhHHHHHHHHHhhC
Q 018782 122 HAFCEA-NDIHSVFRVLDSMKRY 143 (350)
Q Consensus 122 ~~~~~~-~~~~~a~~~~~~~~~~ 143 (350)
.++... |++++|.+.++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 555555 5555555555555443
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.77 E-value=8.7e-08 Score=68.15 Aligned_cols=108 Identities=11% Similarity=-0.036 Sum_probs=81.2
Q ss_pred HHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 018782 34 DNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPD 113 (350)
Q Consensus 34 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 113 (350)
+.+....|.+...+..+...+...|++++|...|++.....+ .+...|..+..++...|++++|+..|++..+.. +.+
T Consensus 8 ~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 85 (142)
T 2xcb_A 8 AMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INE 85 (142)
T ss_dssp -CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 333333344566677778888888888888888888887643 377788888888888888888888888888764 345
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC
Q 018782 114 AFSYSIFIHAFCEANDIHSVFRVLDSMKRY 143 (350)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (350)
...+..+..++...|++++|...|+...+.
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567777888888888888888888887664
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.76 E-value=3.4e-07 Score=64.44 Aligned_cols=97 Identities=16% Similarity=0.035 Sum_probs=48.3
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA 88 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (350)
++..+..+...+...|++++|...|+......|.+...+..+..++...|++++|...+++..+... .+...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHH
Confidence 3444444445555555555555555554444444455555555555555555555555555544422 244444555555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 018782 89 MCKAGNIDEAHGMLREMR 106 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~ 106 (350)
+...|++++|+..|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555555444
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.75 E-value=3e-07 Score=67.08 Aligned_cols=100 Identities=14% Similarity=-0.034 Sum_probs=75.9
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782 8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLE 87 (350)
Q Consensus 8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 87 (350)
.+...+..+...+...|++++|+..|++.....|.+...|..+..++...|++++|+..|++..+.... +...|..+..
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 345566777777778888888888888877766777778888888888888888888888887776433 6777777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 018782 88 AMCKAGNIDEAHGMLREMRSI 108 (350)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~~ 108 (350)
++...|++++|+..|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888877764
No 160
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.74 E-value=1.1e-06 Score=59.78 Aligned_cols=98 Identities=15% Similarity=0.072 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 018782 44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA 123 (350)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (350)
...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3455566666666666666666666666553 2255666666666666666666666666666542 2244555556666
Q ss_pred HHhcCCHhHHHHHHHHHhhC
Q 018782 124 FCEANDIHSVFRVLDSMKRY 143 (350)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~ 143 (350)
+...|++++|...++...+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 66666666666666666554
No 161
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.74 E-value=1.2e-07 Score=66.01 Aligned_cols=98 Identities=15% Similarity=0.120 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC--CCC----HHHHHH
Q 018782 11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKC--PVD----ILAHNS 84 (350)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 84 (350)
..+..+...+...|+++.|...|+......|.+...+..+..++...|++++|...+++..+... +++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34555556666666666666666666554455566666666666666666666666666554321 111 445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 018782 85 LLEAMCKAGNIDEAHGMLREMRSI 108 (350)
Q Consensus 85 l~~~~~~~~~~~~a~~~~~~~~~~ 108 (350)
+..++...|++++|.+.|+...+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555666666666666666665553
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.72 E-value=2e-07 Score=64.18 Aligned_cols=96 Identities=14% Similarity=0.001 Sum_probs=64.1
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018782 12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK 91 (350)
Q Consensus 12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (350)
.+..+...+.+.|++++|...|+.+....|.+...|..+..++...|++++|+..|++..+..+. +...+..+..++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 34455566666777777777777766666666777777777777777777777777776665332 56666667777777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 018782 92 AGNIDEAHGMLREMRSI 108 (350)
Q Consensus 92 ~~~~~~a~~~~~~~~~~ 108 (350)
.|++++|+..+++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777776653
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.72 E-value=3.4e-07 Score=69.16 Aligned_cols=130 Identities=14% Similarity=0.064 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCH----------------HHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 018782 11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTV----------------KTYSILVRGLGDVGELSEARKLFDEMLERK 74 (350)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (350)
..+..+...+...|++++|...|++.....+.++ .++..+..++...|++++|+..+++..+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3466677888899999999999999876444444 789999999999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHH-HHHHHHhh
Q 018782 75 CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVF-RVLDSMKR 142 (350)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~ 142 (350)
+.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++...++..++. ..+..+..
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3478899999999999999999999999998863 345667777777777777766665 44554443
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.69 E-value=5.7e-07 Score=60.55 Aligned_cols=100 Identities=10% Similarity=-0.038 Sum_probs=67.5
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPV--DILAHNSLL 86 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 86 (350)
+...+..+...+...|++++|...|+++....+.+...+..+..++...|++++|...+++..+.. +. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 344556666667777777777777777666556666677777777777777777777777766652 22 466666777
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhCC
Q 018782 87 EAMCKA-GNIDEAHGMLREMRSIG 109 (350)
Q Consensus 87 ~~~~~~-~~~~~a~~~~~~~~~~~ 109 (350)
.++... |++++|.+.++...+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhcc
Confidence 777777 77777777777776643
No 165
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.69 E-value=8.2e-07 Score=61.50 Aligned_cols=97 Identities=15% Similarity=0.076 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 018782 44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA 123 (350)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (350)
...+..+...+...|++++|+..|++..+... .+...|..+..++...|++++|+..+++..+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 44556666666677777777777777666532 256666666666777777777777776666643 2345566666666
Q ss_pred HHhcCCHhHHHHHHHHHhh
Q 018782 124 FCEANDIHSVFRVLDSMKR 142 (350)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~ 142 (350)
+...|++++|...|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 6666666666666666654
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=1.2e-06 Score=62.30 Aligned_cols=99 Identities=12% Similarity=0.038 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 018782 42 PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD----ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSY 117 (350)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 117 (350)
.+...+..+...+...|++++|...|++..+.. |+ ...+..+..++...|++++|+..+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 344555555555555555555555555555432 22 4445555555555555555555555555432 2234455
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhC
Q 018782 118 SIFIHAFCEANDIHSVFRVLDSMKRY 143 (350)
Q Consensus 118 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (350)
..+..++...|++++|...|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 55555555556666666555555543
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.67 E-value=7.4e-07 Score=61.89 Aligned_cols=97 Identities=15% Similarity=0.101 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HhhHH
Q 018782 45 KTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGA--EPD----AFSYS 118 (350)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 118 (350)
..+..+...+.+.|++++|++.|++.++..+ .+...|..+..+|...|++++|++.+++.++... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 4455666677777777777777777666533 2566666677777777777777777766654321 011 12344
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhh
Q 018782 119 IFIHAFCEANDIHSVFRVLDSMKR 142 (350)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~ 142 (350)
.+..++...|++++|+..|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555556666666666655544
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.64 E-value=9.2e-07 Score=62.15 Aligned_cols=100 Identities=10% Similarity=-0.002 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 018782 41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120 (350)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 120 (350)
+.++..+..+...+...|++++|...|++..+... .+...|..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 44566677777777777777777777777666532 356667777777777777777777777776643 2345566666
Q ss_pred HHHHHhcCCHhHHHHHHHHHhh
Q 018782 121 IHAFCEANDIHSVFRVLDSMKR 142 (350)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~ 142 (350)
..++...|++++|...|++..+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777777777777766654
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.64 E-value=4.3e-07 Score=63.07 Aligned_cols=99 Identities=11% Similarity=0.150 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HhhH
Q 018782 44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGA--EPD----AFSY 117 (350)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 117 (350)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3455666666666777777777777666653 23556666666666666777777766666655321 111 4455
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHhhC
Q 018782 118 SIFIHAFCEANDIHSVFRVLDSMKRY 143 (350)
Q Consensus 118 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 143 (350)
..+..++...|++++|...|+...+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 55555666666666666666665553
No 170
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.63 E-value=2.1e-06 Score=59.60 Aligned_cols=95 Identities=15% Similarity=0.063 Sum_probs=59.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHhhhcCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC---HHHHHHHH
Q 018782 13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTV---KTYSILVRGLGDVGELSEARKLFDEMLERKCPVD---ILAHNSLL 86 (350)
Q Consensus 13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 86 (350)
+..+...+...|++++|...|+.+....|.+. ..+..+..++...|++++|...|++..+.... + ..++..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHH
Confidence 34445556667777777777777655444444 46666666677777777777777776665322 2 45566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 018782 87 EAMCKAGNIDEAHGMLREMRSI 108 (350)
Q Consensus 87 ~~~~~~~~~~~a~~~~~~~~~~ 108 (350)
.++...|++++|...|+.+.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666677777777777666654
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=3.5e-06 Score=59.87 Aligned_cols=96 Identities=17% Similarity=0.011 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHhhhcCCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782 11 YDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPT---VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLE 87 (350)
Q Consensus 11 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 87 (350)
..+..+...+...|++++|...|+......+.+ ...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 107 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHH
Confidence 334444444555555555555555544432222 4444445555555555555555555544432 123444444555
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 018782 88 AMCKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 88 ~~~~~~~~~~a~~~~~~~~~ 107 (350)
++...|++++|...|++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555544
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.61 E-value=9e-08 Score=82.32 Aligned_cols=143 Identities=11% Similarity=-0.069 Sum_probs=84.5
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHH
Q 018782 25 HVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVD--------------ILAHNSLLEAMC 90 (350)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~ 90 (350)
++++|+..|+......+.....+..+...+.+.|++++|+..|++.++...... ..+|..+..++.
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455554443332334556677777788888888888888887776532211 456666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHH
Q 018782 91 KAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAY 169 (350)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 169 (350)
+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|++..+.. +.+..++..+..++.+.++.+++.
T Consensus 329 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666643 2345566666666666666666666666666543 234445555555565555555544
No 173
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.61 E-value=7.8e-07 Score=64.86 Aligned_cols=99 Identities=12% Similarity=-0.006 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 184 EWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHG 263 (350)
Q Consensus 184 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 263 (350)
...+..+...+...|++++|+..|++..+... .+...|..+..+|...|++++|...|++..+... .+...+..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 34455555566666666666666666655432 2455566666666666666666666666665421 134444444444
Q ss_pred HhhccCcHHHHHHHHHHHHhCC
Q 018782 264 LCKKKGKLEEACKYFEMMVDEG 285 (350)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~~~~~ 285 (350)
+... |++++|...|++..+..
T Consensus 89 ~~~~-g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDM-ADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHc-cCHHHHHHHHHHHHHhC
Confidence 4443 66666666666665543
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=8.1e-06 Score=69.62 Aligned_cols=196 Identities=9% Similarity=-0.028 Sum_probs=140.9
Q ss_pred HHHHHccCChHHHHHHHHHhhhcCCCCH-----------------HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC
Q 018782 17 LHALCKRKHVKVAHQFFDNAKHEFTPTV-----------------KTYSILVRGLGDVGELSEARKLFDEMLERKCP-VD 78 (350)
Q Consensus 17 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 78 (350)
...+.+.|++++|.+.|..+.+..+... .++..++..|...|++++|.+.+.++.+.-.. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4567889999999999999865322211 24788999999999999999999987653111 12
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC--C---
Q 018782 79 I----LAHNSLLEAMCKAGNIDEAHGMLREMRS----IGAEPD-AFSYSIFIHAFCEANDIHSVFRVLDSMKRY--N--- 144 (350)
Q Consensus 79 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~--- 144 (350)
. .+.+.+...+...|+.+.|.+++..... .+..+. ..++..+...+...|++++|..+++++... +
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2233344445567899999999988764 222232 456788999999999999999999987542 1
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CC-CCC---HHHHHHHHHHHhcccCHHHHHHHHHHHHh
Q 018782 145 LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER--GA-NPD---EWSYNAILAYHCDRAEVNMALRLITRMTK 212 (350)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 212 (350)
-+....++..++..|...|++++|...+++.... .. .|. ...+..+...+...++++.|...+.....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1123567888899999999999999999987643 11 221 23456666777889999999988877654
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.53 E-value=1.6e-05 Score=67.82 Aligned_cols=199 Identities=9% Similarity=-0.008 Sum_probs=110.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC
Q 018782 50 LVRGLGDVGELSEARKLFDEMLERKCPVD----------------ILAHNSLLEAMCKAGNIDEAHGMLREMRSIGA-EP 112 (350)
Q Consensus 50 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~ 112 (350)
-...+...|++++|++.|.++.+...... ..++..+...|...|++++|.+.+..+.+.-. .+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 34556677788888888877776533211 12356667777777777777777776654210 11
Q ss_pred CHh----hHHHHHHHHHhcCCHhHHHHHHHHHhh----CCCC-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--
Q 018782 113 DAF----SYSIFIHAFCEANDIHSVFRVLDSMKR----YNLV-PNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN-- 181 (350)
Q Consensus 113 ~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-- 181 (350)
+.. +.+.+...+...|+.+.+..+++.... .+.. .-..++..+...+...|++++|..++.++...-..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 111 222233333445667777777666532 1111 12345566667777777777777777666542111
Q ss_pred --C-CHHHHHHHHHHHhcccCHHHHHHHHHHHHhC--CC-CC-C--hhHHHHHHHHHHHcCCHhHHHHHHHHHHhc
Q 018782 182 --P-DEWSYNAILAYHCDRAEVNMALRLITRMTKE--NV-MP-D--RHTYNMVLKLLVRVGRFDRATEVWESMEKR 248 (350)
Q Consensus 182 --~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~-~~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 248 (350)
+ ...++..++..|...|++++|..+++..... .. .| . ...+..+...+...|++++|...|.+..+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1 1345666666677777777777776665432 11 11 1 133444555556666777777766666553
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.53 E-value=8.6e-07 Score=60.96 Aligned_cols=97 Identities=8% Similarity=-0.088 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 018782 222 YNMVLKLLVRVGRFDRATEVWESMEKRGFYP-SVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL 300 (350)
Q Consensus 222 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (350)
+..+...+.+.|++++|...|++..+. .| +...+..+-.++... |++++|+..|++..+.. |.+...+..+..++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 445556667777777777777777664 23 444444444444444 77777777777777665 55666777777777
Q ss_pred HcCCChhHHHHHHHHhhccCCC
Q 018782 301 VGLGFLDIIEILADKMERSTSC 322 (350)
Q Consensus 301 ~~~g~~~~a~~~~~~~~~~~~~ 322 (350)
...|++++|...+++..+.++.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 7777777777777777665443
No 177
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.51 E-value=6.7e-07 Score=77.25 Aligned_cols=124 Identities=10% Similarity=-0.030 Sum_probs=99.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782 13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA 92 (350)
Q Consensus 13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (350)
+..+...+.+.|++++|.+.|+++....|.+..+|..+..++.+.|++++|++.+++..+... .+..+|..+..++...
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 333445567889999999999999887788899999999999999999999999999998843 3788999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH--HHhcCCHhHHHHHHH
Q 018782 93 GNIDEAHGMLREMRSIGAEPDAFSYSIFIHA--FCEANDIHSVFRVLD 138 (350)
Q Consensus 93 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 138 (350)
|++++|++.|++..+.. +.+...+..+..+ +.+.|++++|...++
T Consensus 88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999998863 2234455555555 788899999999988
No 178
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.51 E-value=2.5e-06 Score=61.96 Aligned_cols=98 Identities=22% Similarity=0.186 Sum_probs=64.2
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhhc------------------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHE------------------FTPTVKTYSILVRGLGDVGELSEARKLFDEML 71 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 71 (350)
...+......+.+.|++++|+..|+..... .+.+...|..+..++.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344566677778888888888888876543 22334566666666666677777777666666
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 018782 72 ERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI 108 (350)
Q Consensus 72 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 108 (350)
+.. +.+...|..+..++...|++++|...|++..+.
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 653 235666666666666666666666666666654
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.50 E-value=2.7e-06 Score=73.11 Aligned_cols=130 Identities=11% Similarity=-0.005 Sum_probs=106.3
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCC---------------HHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPT---------------VKTYSILVRGLGDVGELSEARKLFDEMLERK 74 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 74 (350)
...+..+...+.+.|++++|...|+++....+.+ ..+|..+..++.+.|++++|+..+++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3456777888999999999999999987754555 6889999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHH-HHHHHh
Q 018782 75 CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFR-VLDSMK 141 (350)
Q Consensus 75 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~ 141 (350)
. .+...|..+..++...|++++|+..|++..+.. +.+...+..+..++.+.++.+++.+ .++.|.
T Consensus 348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 478999999999999999999999999999864 3355678888888888888877653 445443
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.48 E-value=2.7e-06 Score=59.00 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCC---HHHHHHH
Q 018782 224 MVLKLLVRVGRFDRATEVWESMEKRGFYPSV----STYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPY---SSTVEML 296 (350)
Q Consensus 224 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 296 (350)
.+...+...|++++|...|+.+.+.. |+. ..+..+..++... |++++|...|+++.+.. |.+ +..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYAT-RNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 34455555666666666666655431 221 2333333444433 66666666666665543 333 4555566
Q ss_pred HHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782 297 RNRLVGLGFLDIIEILADKMERSTSCT 323 (350)
Q Consensus 297 ~~~~~~~g~~~~a~~~~~~~~~~~~~~ 323 (350)
..++...|++++|...++++.+..+..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 666666666666666666665554443
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.46 E-value=2.1e-06 Score=62.01 Aligned_cols=94 Identities=14% Similarity=0.004 Sum_probs=42.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHhhhcCC--CC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----HH
Q 018782 12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFT--PT----VKTYSILVRGLGDVGELSEARKLFDEMLERKCP-VD----IL 80 (350)
Q Consensus 12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~ 80 (350)
++..+...+...|++++|...+++.....+ ++ ..++..+...+...|++++|.+.+++..+.... ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 344455555556666666666655432100 00 124445555555555555555555554332000 00 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 018782 81 AHNSLLEAMCKAGNIDEAHGMLREM 105 (350)
Q Consensus 81 ~~~~l~~~~~~~~~~~~a~~~~~~~ 105 (350)
++..+..++...|++++|...+++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344444444445555444444444
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.46 E-value=3.1e-06 Score=70.48 Aligned_cols=90 Identities=7% Similarity=-0.037 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHH
Q 018782 78 DILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIR 157 (350)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 157 (350)
+..+|..+..++.+.|++++|+..+++.++.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34555556666666666666666666666542 2244555556666666666666666666665543 224445555555
Q ss_pred HHHccCCHHHHH
Q 018782 158 KLCKNEKVEEAY 169 (350)
Q Consensus 158 ~~~~~g~~~~a~ 169 (350)
++...++.+++.
T Consensus 350 ~~~~~~~~~~a~ 361 (370)
T 1ihg_A 350 VKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.45 E-value=3.7e-06 Score=61.07 Aligned_cols=105 Identities=12% Similarity=0.042 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhc--------CC--------CC-CHHHHHHHHHHHhhccCcHHHHHHHHHHHHh
Q 018782 221 TYNMVLKLLVRVGRFDRATEVWESMEKR--------GF--------YP-SVSTYSVMVHGLCKKKGKLEEACKYFEMMVD 283 (350)
Q Consensus 221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~--------~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 283 (350)
.+......+.+.|++++|...|.+..+. .. .| +...|..+..++... |++++|+..+++.+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI-GDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHh
Confidence 3444555555556666666655555442 00 11 123455555555544 788888888887777
Q ss_pred CCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHH
Q 018782 284 EGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQEL 327 (350)
Q Consensus 284 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 327 (350)
.+ |.+...|..+..++...|++++|...+++....+|.....+
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 134 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVV 134 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHH
Confidence 65 66777777788888888888888888888777766665343
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.44 E-value=7.1e-07 Score=60.97 Aligned_cols=85 Identities=11% Similarity=0.067 Sum_probs=58.1
Q ss_pred cCChHHHHHHHHHhhhc---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 018782 23 RKHVKVAHQFFDNAKHE---FTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAH 99 (350)
Q Consensus 23 ~g~~~~a~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 99 (350)
.|++++|+..|++.... .|.+...+..+..++...|++++|+..|++..+..+. +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 56777777777776653 3555667777777777777777777777777776433 5677777777777777777777
Q ss_pred HHHHHHHhC
Q 018782 100 GMLREMRSI 108 (350)
Q Consensus 100 ~~~~~~~~~ 108 (350)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777654
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.43 E-value=2.8e-07 Score=79.60 Aligned_cols=125 Identities=9% Similarity=-0.008 Sum_probs=98.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 018782 46 TYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFC 125 (350)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 125 (350)
.+..+...+.+.|++++|++.|++..+... .+..+|..+..++.+.|++++|++.+++..+.. +.+...+..+..++.
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 85 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344455667788999999999999998743 378999999999999999999999999999874 346778899999999
Q ss_pred hcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHH--HHccCCHHHHHHHHH
Q 018782 126 EANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRK--LCKNEKVEEAYQLLD 173 (350)
Q Consensus 126 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 173 (350)
..|++++|...|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 86 ~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999997754 2344555555555 888899999999988
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.43 E-value=2e-06 Score=62.15 Aligned_cols=134 Identities=11% Similarity=0.018 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-C
Q 018782 44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCP-VD----ILAHNSLLEAMCKAGNIDEAHGMLREMRSIG----AEP-D 113 (350)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~ 113 (350)
..++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.. ..+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345667777777788888888888776643111 11 1356667777777777777777777765421 000 1
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC----CCC-ccHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 018782 114 AFSYSIFIHAFCEANDIHSVFRVLDSMKRY----NLV-PNVFTYNCIIRKLCKNEKVEEAYQLLDEMIE 177 (350)
Q Consensus 114 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (350)
...+..+...+...|++++|...+++..+. +.. ....++..+...+...|++++|...+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 234555566666666766666666655432 100 1123444555555566666666666655543
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.39 E-value=6.7e-05 Score=66.10 Aligned_cols=173 Identities=8% Similarity=-0.032 Sum_probs=136.7
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018782 24 KHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGE----------LSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG 93 (350)
Q Consensus 24 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 93 (350)
..-++|++.++.+....|.+..+|+.--.++...|+ ++++++.++.+.+...+ +..+|+.-..++.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 344678999999888778888888888877777777 89999999999988655 8888988888888888
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-CHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHcc--------
Q 018782 94 --NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN-DIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKN-------- 162 (350)
Q Consensus 94 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 162 (350)
+++++++.++++.+.. +-+..+|+.-.-.....| .++++++.++++.+.. +-+..+|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 6799999999999874 457778888777778888 8899999999988875 44777777766665552
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCH
Q 018782 163 ------EKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEV 200 (350)
Q Consensus 163 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 200 (350)
+.++++++.+.++....+. +...|.-+-..+.+.++.
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence 5578899999888887554 677777777766665553
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.34 E-value=1e-05 Score=57.57 Aligned_cols=94 Identities=14% Similarity=-0.070 Sum_probs=52.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHhhhcCCC-------CH-----HHHHHHHHHHhccCCHHHHHHHHHHHHhc-------
Q 018782 13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTP-------TV-----KTYSILVRGLGDVGELSEARKLFDEMLER------- 73 (350)
Q Consensus 13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------- 73 (350)
+......+...|++++|+..|++...-.|. +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 445556666777777777777776552222 22 25556666666666666666666655543
Q ss_pred CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782 74 KCPVDILAH----NSLLEAMCKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 74 ~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 107 (350)
... +...| .....++...|++++|+..|++..+
T Consensus 94 ~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 221 33444 5555555555555555555555543
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.33 E-value=1.2e-05 Score=66.93 Aligned_cols=98 Identities=8% Similarity=-0.103 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782 80 LAHNSLLEAMCKAGNIDEAHGMLREMRSIG---------------AEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN 144 (350)
Q Consensus 80 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 144 (350)
..+..+...+.+.|++++|+..|++.++.- .+.+..+|..+..++.+.|++++|+..+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346667777888888888888888776520 01122334444444444444444444444444432
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 018782 145 LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER 178 (350)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 178 (350)
+.+...+..+..+|...|++++|...|++..+.
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 223344444444444444444444444444443
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.31 E-value=1.1e-06 Score=59.97 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=36.9
Q ss_pred cCHHHHHHHHHHHHhCC--CCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHH
Q 018782 198 AEVNMALRLITRMTKEN--VMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEAC 275 (350)
Q Consensus 198 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~ 275 (350)
|++++|+..|++..+.+ -+.+...+..+..++...|++++|...|++..+.... +...+..+..++... |++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~-g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNL-GRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH-TCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHc-CCHHHHH
Confidence 44555555555555432 1112334444555555555555555555555543211 233333333333333 5555555
Q ss_pred HHHHHHHhC
Q 018782 276 KYFEMMVDE 284 (350)
Q Consensus 276 ~~~~~~~~~ 284 (350)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555443
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.30 E-value=0.00012 Score=64.50 Aligned_cols=173 Identities=14% Similarity=0.068 Sum_probs=111.3
Q ss_pred hHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccc--
Q 018782 131 HSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEK----------VEEAYQLLDEMIERGANPDEWSYNAILAYHCDRA-- 198 (350)
Q Consensus 131 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-- 198 (350)
++|++.++++.... +-+..+|+.--.++...|+ ++++++.++.+.+..++ +..+|..-.-++.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 45566666665543 2344455544444444444 67777777777766544 6666666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC-CHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhc----------
Q 018782 199 EVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVG-RFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKK---------- 267 (350)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---------- 267 (350)
+++++++.++.+.+... -+...|+.-..++.+.| .++++.+.++++.+..+. |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 55777777777777653 35566666666666666 677777777777765333 555555444433321
Q ss_pred ---cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhH
Q 018782 268 ---KGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDI 308 (350)
Q Consensus 268 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 308 (350)
.+.++++++.+++++... |-+...|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 256899999999998876 7788999998888888877544
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.30 E-value=3.8e-06 Score=69.11 Aligned_cols=96 Identities=11% Similarity=0.045 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHH-H
Q 018782 81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRK-L 159 (350)
Q Consensus 81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 159 (350)
+|..+..++.+.|++++|+..+++.++.. +.+...+..+..++...|++++|...|++..+.. +.+...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 67778888888888888888888887753 3456677888888888888888888888887653 2244455555444 2
Q ss_pred HccCCHHHHHHHHHHHHHc
Q 018782 160 CKNEKVEEAYQLLDEMIER 178 (350)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~ 178 (350)
...+..+.+...|..+...
T Consensus 310 ~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHhhCC
Confidence 3345667777788777665
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.27 E-value=4.7e-06 Score=68.58 Aligned_cols=154 Identities=13% Similarity=0.024 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 018782 149 VFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKL 228 (350)
Q Consensus 149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 228 (350)
...+..+...+.+.|++++|...|++..... |+... +...++..++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4556677777888888888888888877652 33221 223333443332221 1367788888
Q ss_pred HHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HcCCChh
Q 018782 229 LVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL-VGLGFLD 307 (350)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 307 (350)
+.+.|++++|...+++..+... .+...+..+..++... |++++|...|+++.+.. +.+...+..+.... ...+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~-g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAEL-GQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTT-TCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999988887532 2566777777777665 89999999999887765 44555666665552 3456677
Q ss_pred HHHHHHHHhhccCCCcH
Q 018782 308 IIEILADKMERSTSCTI 324 (350)
Q Consensus 308 ~a~~~~~~~~~~~~~~~ 324 (350)
.+..++.++....+..+
T Consensus 317 ~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHhhCCCCCCC
Confidence 78888888876655443
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.24 E-value=7.3e-05 Score=52.50 Aligned_cols=110 Identities=10% Similarity=-0.036 Sum_probs=67.6
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 018782 25 HVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK----AGNIDEAHG 100 (350)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 100 (350)
++++|.++|++......+... +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|++
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 556667777666543233332 5566666666666777777766653 55666666666666 566777777
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHhhCC
Q 018782 101 MLREMRSIGAEPDAFSYSIFIHAFCE----ANDIHSVFRVLDSMKRYN 144 (350)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 144 (350)
.|++..+.| +...+..|...|.. .++.++|..+|++..+.|
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777766654 34455556666665 566666666666666655
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.19 E-value=1e-05 Score=54.28 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=32.3
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
...+..+...+...|++++|...|++.....|.+...+..+..++...|++++|++.+++..+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3344444455555555555555555554444444555555555555555555555555555443
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.19 E-value=1.1e-05 Score=69.46 Aligned_cols=86 Identities=15% Similarity=0.063 Sum_probs=40.8
Q ss_pred HccCChHHHHHHHHHhhh--------cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc-----C--CCCCHHHHHHH
Q 018782 21 CKRKHVKVAHQFFDNAKH--------EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER-----K--CPVDILAHNSL 85 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l 85 (350)
..+|++++|..++++... ..+....+++.|..+|...|++++|+.++++.++. | .+....+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345566666555555421 01122344555555555555555555555554321 1 11123344555
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 018782 86 LEAMCKAGNIDEAHGMLREMR 106 (350)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~ 106 (350)
...|...|++++|+.++++..
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555555555443
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.17 E-value=1.4e-05 Score=54.10 Aligned_cols=79 Identities=10% Similarity=-0.017 Sum_probs=60.4
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782 28 VAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 28 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 107 (350)
.|+..|+......|.+...+..+..++...|++++|+..|++..+... .+...|..+..++...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466677777666677778888888888888888888888888777643 3667777788888888888888888887765
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.17 E-value=2.9e-05 Score=49.80 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=28.9
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782 12 DLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
.+..+...+...|++++|...|++.....|.+...+..+..++...|++++|...+++..+.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 33444444444455555555554444433444444444444444444444444444444443
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.16 E-value=8.1e-06 Score=57.96 Aligned_cols=99 Identities=16% Similarity=0.051 Sum_probs=74.2
Q ss_pred HccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCH----------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 018782 21 CKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGEL----------SEARKLFDEMLERKCPVDILAHNSLLEAMC 90 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (350)
.+.+.+++|.+.++......|.++..|..+..++...+++ ++|+..|++.++..+. +..+|..+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3456788899999988887788999999888888887765 4888888888887544 6778888888887
Q ss_pred hcC-----------CHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 018782 91 KAG-----------NIDEAHGMLREMRSIGAEPDAFSYSIFIH 122 (350)
Q Consensus 91 ~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 122 (350)
..| ++++|++.|++..+. .|+...|...+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 764 677777777777773 455555544433
No 200
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.16 E-value=5.8e-05 Score=53.69 Aligned_cols=94 Identities=21% Similarity=0.175 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-----C-----HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC-------C
Q 018782 83 NSLLEAMCKAGNIDEAHGMLREMRSIGAE-P-----D-----AFSYSIFIHAFCEANDIHSVFRVLDSMKRY-------N 144 (350)
Q Consensus 83 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~ 144 (350)
......+.+.|++++|+..|++.++.... | + ...|..+..++.+.|++++|+..+++.++. .
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33444444555555555555555542111 0 1 114555555555555555555555555443 2
Q ss_pred CCccHHHH----HHHHHHHHccCCHHHHHHHHHHHHH
Q 018782 145 LVPNVFTY----NCIIRKLCKNEKVEEAYQLLDEMIE 177 (350)
Q Consensus 145 ~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (350)
+-+...| .....++...|++++|+..|++..+
T Consensus 95 -pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 -QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp -STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1233445 5556666666666666666666554
No 201
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.12 E-value=0.00016 Score=50.69 Aligned_cols=109 Identities=9% Similarity=-0.024 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHhHHH
Q 018782 59 ELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCE----ANDIHSVF 134 (350)
Q Consensus 59 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 134 (350)
++++|.+.|++..+.|.+ ... |...|...+..++|++.|++..+.| +...+..|...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 445555555555555421 222 4444444445555555555555543 33444445555544 45555555
Q ss_pred HHHHHHhhCCCCccHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHc
Q 018782 135 RVLDSMKRYNLVPNVFTYNCIIRKLCK----NEKVEEAYQLLDEMIER 178 (350)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 178 (350)
.+|++..+.| +...+..|...|.. .+++++|...|++..+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555554443 33344444444444 44555555555554444
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.12 E-value=4.9e-06 Score=55.84 Aligned_cols=92 Identities=12% Similarity=0.017 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------Hh
Q 018782 43 TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPD-------AF 115 (350)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------~~ 115 (350)
+...+..+...+...|++++|+..|++..+... .+...+..+..++...|++++|++.+++..+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 456677788888888888888888888877643 367788888888888888888888888888753 33 33
Q ss_pred hHHHHHHHHHhcCCHhHHHHHH
Q 018782 116 SYSIFIHAFCEANDIHSVFRVL 137 (350)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~ 137 (350)
.+..+..++...|+.+.+...+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 4445555555555555544433
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.12 E-value=3.2e-05 Score=66.61 Aligned_cols=86 Identities=16% Similarity=0.027 Sum_probs=39.7
Q ss_pred hccCCHHHHHHHHHHHHhc-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCC-HhhHHHH
Q 018782 55 GDVGELSEARKLFDEMLER-----K--CPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI-----GA-EPD-AFSYSIF 120 (350)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l 120 (350)
...|++++|+.++++.++. | .+....+++.|...|...|++++|+.++++.++. |. .|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455555555555554432 1 0112334555555555555555555555554321 10 111 2244455
Q ss_pred HHHHHhcCCHhHHHHHHHHH
Q 018782 121 IHAFCEANDIHSVFRVLDSM 140 (350)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~ 140 (350)
...|...|++++|..++++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 55555555555555555443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.99 E-value=0.00012 Score=46.70 Aligned_cols=80 Identities=21% Similarity=0.188 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 018782 44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA 123 (350)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (350)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4556666666666677777777776666553 2255666666666666666666666666666542 2234444444444
Q ss_pred HH
Q 018782 124 FC 125 (350)
Q Consensus 124 ~~ 125 (350)
+.
T Consensus 87 ~~ 88 (91)
T 1na3_A 87 KQ 88 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.89 E-value=0.00011 Score=49.51 Aligned_cols=61 Identities=8% Similarity=0.098 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018782 115 FSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMI 176 (350)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 176 (350)
..+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|...|++..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444444444443332 2223334444444444444444444444433
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.87 E-value=7.9e-05 Score=52.89 Aligned_cols=29 Identities=14% Similarity=0.006 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 018782 167 EAYQLLDEMIERGANPDEWSYNAILAYHCD 196 (350)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 196 (350)
+|+..|++.++..+. +..+|..+..+|..
T Consensus 64 eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 64 EAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 444444444444322 33344444444443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.86 E-value=0.00013 Score=47.80 Aligned_cols=65 Identities=17% Similarity=0.035 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018782 41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMR 106 (350)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 106 (350)
|.++..+..+..++...|++++|+..|++..+.... +...|..+..++...|++++|.+.|++..
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334455555555555555555555555555554322 44455555555555555555555555544
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.80 E-value=0.00014 Score=47.74 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=60.1
Q ss_pred CcCHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782 7 KPSIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 7 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
+-++..+..+...+...|++++|+..|+++....|.+...|..+..++...|++++|.+.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3466778889999999999999999999998877888999999999999999999999999998754
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.70 E-value=0.0018 Score=52.87 Aligned_cols=149 Identities=7% Similarity=-0.008 Sum_probs=99.9
Q ss_pred HhhhcCCCCHHHHHHHHHHHhc--c---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh---cC--CHHHH---HHH
Q 018782 35 NAKHEFTPTVKTYSILVRGLGD--V---GELSEARKLFDEMLERKCPVDILAHNSLLEAMCK---AG--NIDEA---HGM 101 (350)
Q Consensus 35 ~~~~~~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~~~~a---~~~ 101 (350)
......|.+...|...+++... . ....+|..+|++.++..+. ....|..+..++.. .+ ..... ...
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence 3444567778888887765532 2 3457899999999887332 44555544444431 11 11111 112
Q ss_pred HHHHHh-CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 018782 102 LREMRS-IGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGA 180 (350)
Q Consensus 102 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 180 (350)
++.... ...+.+..++..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++....
T Consensus 264 ~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL-- 339 (372)
T 3ly7_A 264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL-- 339 (372)
T ss_dssp HHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 222211 1125577788888777777899999999999998875 78888888888999999999999999999987
Q ss_pred CCCHHHHH
Q 018782 181 NPDEWSYN 188 (350)
Q Consensus 181 ~~~~~~~~ 188 (350)
.|...+|.
T Consensus 340 ~P~~~t~~ 347 (372)
T 3ly7_A 340 RPGANTLY 347 (372)
T ss_dssp SCSHHHHH
T ss_pred CCCcChHH
Confidence 45666654
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.69 E-value=0.0023 Score=52.21 Aligned_cols=143 Identities=14% Similarity=0.085 Sum_probs=95.9
Q ss_pred CCCCHHHHHHHHHHHHh--cC---CHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHh---cC--C---HhHHHHHHHHH
Q 018782 75 CPVDILAHNSLLEAMCK--AG---NIDEAHGMLREMRSIGAEPD-AFSYSIFIHAFCE---AN--D---IHSVFRVLDSM 140 (350)
Q Consensus 75 ~~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~--~---~~~a~~~~~~~ 140 (350)
.+.+...|...+++... .+ ...+|..+|++..+. .|+ ...+..+..++.. .+ . .......++..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 34577777777765443 33 358899999999985 454 3444444433321 11 1 11111222222
Q ss_pred hh-CCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCh
Q 018782 141 KR-YNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDR 219 (350)
Q Consensus 141 ~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 219 (350)
.. ...+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++.... .|..
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~ 343 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGA 343 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCc
Confidence 11 1125678888888777777899999999999999985 67777878888888999999999999998885 4666
Q ss_pred hHHH
Q 018782 220 HTYN 223 (350)
Q Consensus 220 ~~~~ 223 (350)
.+|.
T Consensus 344 ~t~~ 347 (372)
T 3ly7_A 344 NTLY 347 (372)
T ss_dssp HHHH
T ss_pred ChHH
Confidence 6654
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.43 E-value=0.00044 Score=58.56 Aligned_cols=60 Identities=5% Similarity=-0.080 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 018782 81 AHNSLLEAMCKAGNIDEAHGMLREMRS-----IG-AEPD-AFSYSIFIHAFCEANDIHSVFRVLDSM 140 (350)
Q Consensus 81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 140 (350)
+++.|..+|...|++++|+.++++.++ .| -.|+ ..+++.|...|...|++++|..++++.
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 344444444444444444444444432 11 0111 123444445555555555555544443
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.36 E-value=0.00091 Score=56.66 Aligned_cols=89 Identities=9% Similarity=0.019 Sum_probs=55.5
Q ss_pred HHhccCCHHHHHHHHHHHHhc---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCC-HhhHH
Q 018782 53 GLGDVGELSEARKLFDEMLER---KCPV----DILAHNSLLEAMCKAGNIDEAHGMLREMRSI-----G-AEPD-AFSYS 118 (350)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~ 118 (350)
.+...|++++|+.++++.++. -+.| ...+++.+...|...|++++|+.++++.++. | ..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344566777777777776542 1122 2456677777777777777777777766531 2 1122 23567
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHh
Q 018782 119 IFIHAFCEANDIHSVFRVLDSMK 141 (350)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~ 141 (350)
.|...|...|++++|..++++..
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 77777777777777777777653
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.34 E-value=0.0023 Score=41.43 Aligned_cols=60 Identities=12% Similarity=0.170 Sum_probs=46.0
Q ss_pred HHHHHHccCChHHHHHHHHHhhhcCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 018782 16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVK-TYSILVRGLGDVGELSEARKLFDEMLERKC 75 (350)
Q Consensus 16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 75 (350)
....+...|++++|...|+.+....|.+.. .+..+..++...|++++|.+.|++..+...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 345566778888888888887776677777 888888888888888888888888877643
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.27 E-value=0.011 Score=46.43 Aligned_cols=85 Identities=11% Similarity=0.050 Sum_probs=54.7
Q ss_pred HhHHHHHHHHHhhCCCCcc---HHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-cCH
Q 018782 130 IHSVFRVLDSMKRYNLVPN---VFTYNCIIRKLCKN-----EKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDR-AEV 200 (350)
Q Consensus 130 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~ 200 (350)
...|...+++..+.. |+ ...|..+...|.+. |+.++|...|++.++.+..-+..++......+++. ++.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 355666666666543 44 45666777777663 77777777777777765433456666666666663 777
Q ss_pred HHHHHHHHHHHhCCCC
Q 018782 201 NMALRLITRMTKENVM 216 (350)
Q Consensus 201 ~~a~~~~~~~~~~~~~ 216 (350)
+.+.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777776544
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.26 E-value=0.00094 Score=43.37 Aligned_cols=54 Identities=19% Similarity=0.315 Sum_probs=22.9
Q ss_pred HHHHcCCHhHHHHHHHHHHhcCCCC-CHH-HHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782 228 LLVRVGRFDRATEVWESMEKRGFYP-SVS-TYSVMVHGLCKKKGKLEEACKYFEMMVDE 284 (350)
Q Consensus 228 ~~~~~~~~~~a~~~~~~~~~~~~~p-~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 284 (350)
.+...|++++|...++++.+. .| +.. .+..+..++... |++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKL-GDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Confidence 344444555555555444443 12 222 333333333322 4555555555554444
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.21 E-value=0.0031 Score=40.45 Aligned_cols=67 Identities=12% Similarity=-0.013 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 018782 41 TPTVKTYSILVRGLGDVGE---LSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI 108 (350)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 108 (350)
|.++..+..+..++...++ .++|..++++.++.... +......+...+.+.|++++|+..|+++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455555555555543332 45666666665555332 5555555556666666666666666666554
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.17 E-value=0.0014 Score=55.56 Aligned_cols=85 Identities=9% Similarity=-0.035 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHhC---CCCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHhh-----CC--CCccHHHHHHHHHH
Q 018782 93 GNIDEAHGMLREMRSI---GAEPD----AFSYSIFIHAFCEANDIHSVFRVLDSMKR-----YN--LVPNVFTYNCIIRK 158 (350)
Q Consensus 93 ~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~~~~~l~~~ 158 (350)
|++++|+.++++.++. -+.|+ ..+++.|...|...|++++|..++++... .| .+-...+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 6788888888887642 12222 35788999999999999999999988753 22 22235678899999
Q ss_pred HHccCCHHHHHHHHHHHHH
Q 018782 159 LCKNEKVEEAYQLLDEMIE 177 (350)
Q Consensus 159 ~~~~g~~~~a~~~~~~~~~ 177 (350)
|...|++++|+.++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999998765
No 218
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.17 E-value=0.0053 Score=39.36 Aligned_cols=66 Identities=11% Similarity=-0.010 Sum_probs=34.6
Q ss_pred cCHhhHHHHHHHHHccCC---hHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782 8 PSIYDLDQLLHALCKRKH---VKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 8 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
.|+..+..+..++...++ .++|..++++.....|.++.....+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444432222 455555555555545555555555555555555555555555555554
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.16 E-value=0.0058 Score=40.14 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=39.5
Q ss_pred cCHhhHHHHHHHHHccCChHHHHHHHHHhhhc-------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782 8 PSIYDLDQLLHALCKRKHVKVAHQFFDNAKHE-------FTPTVKTYSILVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 8 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
.++..+..+...+...|++..|..+|+.+... ..+...++..+..++.+.|+++.|...+++..+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45555666666666777777777777665431 1234455666666666666666666666666554
No 220
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.11 E-value=0.0054 Score=43.03 Aligned_cols=83 Identities=12% Similarity=0.026 Sum_probs=58.7
Q ss_pred ChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 018782 25 HVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVG---ELSEARKLFDEMLERKCPV--DILAHNSLLEAMCKAGNIDEAH 99 (350)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~ 99 (350)
.+..+.+.|.......+++..+...+..++++.+ ++++++.+++.+.+.. .| ....+..+.-++.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445556666554444577788888888888877 5668888888877764 22 3566666777788888888888
Q ss_pred HHHHHHHhC
Q 018782 100 GMLREMRSI 108 (350)
Q Consensus 100 ~~~~~~~~~ 108 (350)
+.++.+++.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888874
No 221
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.08 E-value=0.0038 Score=52.88 Aligned_cols=92 Identities=7% Similarity=-0.073 Sum_probs=72.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCCC----HhhHHHHHHHHHhcCCHhHHHHHHHHHhh-----CC--CCccHHH
Q 018782 86 LEAMCKAGNIDEAHGMLREMRSIG---AEPD----AFSYSIFIHAFCEANDIHSVFRVLDSMKR-----YN--LVPNVFT 151 (350)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~~ 151 (350)
+..+...|++++|+.++++.++.. +.|+ ..+++.+...|...|++++|..++++... .| .+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444667899999999999998642 2222 35788999999999999999999988753 22 2223567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 018782 152 YNCIIRKLCKNEKVEEAYQLLDEMIE 177 (350)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 177 (350)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999998764
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.03 Score=40.34 Aligned_cols=99 Identities=12% Similarity=0.215 Sum_probs=49.6
Q ss_pred HhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 018782 54 LGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSV 133 (350)
Q Consensus 54 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 133 (350)
....|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34455666666555544 1455566666666666666666666655432 33344444445555555
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHH
Q 018782 134 FRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLD 173 (350)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 173 (350)
.++-+.....| -++.....+.-.|+++++.++|.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444443333 12223333444555555555553
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.07 E-value=0.0085 Score=55.43 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=14.3
Q ss_pred ChhHHHHHHHHHHHcCCHhHHHHHHHHH
Q 018782 218 DRHTYNMVLKLLVRVGRFDRATEVWESM 245 (350)
Q Consensus 218 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 245 (350)
+...|..+...+.+.++++.|.+.|..+
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3344555555555555555555555544
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.06 E-value=0.018 Score=53.32 Aligned_cols=185 Identities=11% Similarity=0.041 Sum_probs=101.0
Q ss_pred HHHHccCChHHHHH-HHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018782 18 HALCKRKHVKVAHQ-FFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNID 96 (350)
Q Consensus 18 ~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 96 (350)
......+++++|.+ ++..+. +......++..+.+.|.++.|.++.+.-. .-.......|+++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~-----~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE-----GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT 669 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC-----CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred hHHHHhCCHHHHHHHHHhcCC-----chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence 33456788888877 553322 12233777777888888888887663211 1123455678888
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 018782 97 EAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMI 176 (350)
Q Consensus 97 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 176 (350)
.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++... ..+...+...|+.+....+.+...
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~---------~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDL---------ESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCH---------HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccCh---------hhhHHHHHHcCCHHHHHHHHHHHH
Confidence 888775432 35677888888888888888888888876431 122233333444444333333333
Q ss_pred HcCCCCC-------HHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCh----hHHHHHHHHHHHcCCHhHHH
Q 018782 177 ERGANPD-------EWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDR----HTYNMVLKLLVRVGRFDRAT 239 (350)
Q Consensus 177 ~~~~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~ 239 (350)
..|..-. ..-+...+..|.+.+++++|..+-+. . .|.. .........+...|+.+.|.
T Consensus 735 ~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~---~--~~~~~~i~~~~~~~~~~L~~~~~~~~a~ 803 (814)
T 3mkq_A 735 TTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGST---Y--GLGDNEVNDIVTKWKENLILNGKNTVSE 803 (814)
T ss_dssp HTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHH---T--TCCHHHHHHHHHHHHHHHHTTTCHHHHT
T ss_pred HcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHH---h--CCChHHHHHHHHHHHHHHHhccchhHHH
Confidence 3221000 00123344455555555555554443 2 2344 34444445556667654443
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.06 E-value=0.0096 Score=41.78 Aligned_cols=50 Identities=10% Similarity=0.030 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChhHHHHHHHHhhccCC
Q 018782 271 LEEACKYFEMMVDEGIPP--YSSTVEMLRNRLVGLGFLDIIEILADKMERSTS 321 (350)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 321 (350)
.++++.+|+...+.+ .| +...+..+.-++.+.|++++|.+.++.+.+..|
T Consensus 51 ~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 51 IRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 334444444444432 12 233334444444444444444444444444444
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.87 E-value=0.015 Score=38.17 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=30.1
Q ss_pred CcHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHH
Q 018782 269 GKLEEACKYFEMMVDEG------IPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQE 326 (350)
Q Consensus 269 ~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 326 (350)
|++..|...|+.+.+.. -.+...++..+..++.+.|+++.|...++++.+..|.....
T Consensus 19 ~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 55555555555444320 12344555556666666666666666666665555554443
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.12 Score=37.28 Aligned_cols=130 Identities=11% Similarity=0.089 Sum_probs=95.0
Q ss_pred HHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHH
Q 018782 17 LHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNID 96 (350)
Q Consensus 17 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 96 (350)
+......|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+..+ +..+.-.|...|+.+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 34556789999999998876 3678999999999999999999999998764 234556677788988
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782 97 EAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEM 175 (350)
Q Consensus 97 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 175 (350)
...++-+.....|- ++....++.-.|+++++.++|.+..+ .|... ......|..+.|.++.+.+
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 87777777666542 55566677788999999999865533 22211 1122356667777777665
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.57 E-value=0.099 Score=36.33 Aligned_cols=102 Identities=17% Similarity=0.140 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHh-hHHHHHH------HHHhcCCHhHHHHHHHHHhhCC
Q 018782 78 DILAHNSLLEAMCKAGNI------DEAHGMLREMRSIGAEPDAF-SYSIFIH------AFCEANDIHSVFRVLDSMKRYN 144 (350)
Q Consensus 78 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~ 144 (350)
|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|...+. .+...+|.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445555555555555555 5666667666654 444421 1111111 1123467777777777775542
Q ss_pred CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 018782 145 LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGAN 181 (350)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 181 (350)
+.-...|......-.+.|+...|..++......+.+
T Consensus 91 -KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 -KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp -TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 222555555556666677777777777777776655
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.56 E-value=0.035 Score=38.52 Aligned_cols=53 Identities=9% Similarity=0.040 Sum_probs=29.8
Q ss_pred cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCC
Q 018782 198 AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFY 251 (350)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 251 (350)
+++++|.++|+.++..+-.. ...|....+--.+.|++..|.+++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 56666666666665432222 445555555555666666666666666655444
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.44 E-value=0.028 Score=37.93 Aligned_cols=85 Identities=12% Similarity=-0.005 Sum_probs=51.0
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHH---HHHHHHHHHhcCCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 018782 24 KHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSE---ARKLFDEMLERKCP-VDILAHNSLLEAMCKAGNIDEAH 99 (350)
Q Consensus 24 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 99 (350)
..+..+.+-|.......+++..+-..+..++.+..+... ++.+++.+.+.+.+ -.......|.-++.+.|++++|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 344445555555444344666666667777777665555 66777776665311 13444555666677777777777
Q ss_pred HHHHHHHhC
Q 018782 100 GMLREMRSI 108 (350)
Q Consensus 100 ~~~~~~~~~ 108 (350)
+.++.+++.
T Consensus 95 ~~~~~lL~~ 103 (126)
T 1nzn_A 95 KYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777777763
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.36 E-value=0.049 Score=42.77 Aligned_cols=86 Identities=17% Similarity=0.239 Sum_probs=57.0
Q ss_pred hHHHHHHHHHhhhcCCC--CHHHHHHHHHHHhcc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHH
Q 018782 26 VKVAHQFFDNAKHEFTP--TVKTYSILVRGLGDV-----GELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA-GNIDE 97 (350)
Q Consensus 26 ~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 97 (350)
...|...+++...-.|. +...|..+...|... |+.++|.+.|++.++.+..-+..++......++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34455555555443333 456777777777773 78888888888877764433466777777777764 77888
Q ss_pred HHHHHHHHHhCCCC
Q 018782 98 AHGMLREMRSIGAE 111 (350)
Q Consensus 98 a~~~~~~~~~~~~~ 111 (350)
+.+.+++.+.....
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 88888888776544
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.22 E-value=0.076 Score=35.82 Aligned_cols=90 Identities=13% Similarity=0.013 Sum_probs=48.2
Q ss_pred CCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHH---HHHHHHHHHHhCCCCC--CHHHHHHHHHHHHcCCChh
Q 018782 233 GRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLE---EACKYFEMMVDEGIPP--YSSTVEMLRNRLVGLGFLD 307 (350)
Q Consensus 233 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~---~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 307 (350)
..+..+.+-|.+....|. |+..+-..+..++.+. .+.. +++.++..+...+ .| .......+.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S-~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRT-RYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTS-SSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 344445555555444333 3444433344444433 3333 3666666665554 22 3344555666777777777
Q ss_pred HHHHHHHHhhccCCCcHH
Q 018782 308 IIEILADKMERSTSCTIQ 325 (350)
Q Consensus 308 ~a~~~~~~~~~~~~~~~~ 325 (350)
+|.+.++.+.+..|.+.+
T Consensus 92 ~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhCCCCHH
Confidence 777777777766665544
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.21 E-value=0.16 Score=34.62 Aligned_cols=140 Identities=10% Similarity=0.059 Sum_probs=88.3
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHH
Q 018782 160 CKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRAT 239 (350)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 239 (350)
.-.|..++..++..+..... +..-|+.++.-....-+-+-..+.++.+-+. .|.. .+|++....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence 34566777777777666542 4555666665555555555555555554332 2211 123333333
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782 240 EVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 240 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
..+-.+- .+...+...+..+..+ |+-++-.+++..+... .+|++..+..+..+|.+.|+..+|.+++.+.-+.
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~-~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQ-GKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHT-TCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHh-ccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 2222221 2444556666666656 8999999999986554 3789999999999999999999999999999887
Q ss_pred CCC
Q 018782 320 TSC 322 (350)
Q Consensus 320 ~~~ 322 (350)
+..
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 654
No 234
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.37 E-value=0.39 Score=32.77 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=29.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCC
Q 018782 152 YNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENV 215 (350)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 215 (350)
+...+..+...|+.+...+++..+.. +.+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 33344444445555555555444332 1233444444445555555555555555555544443
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.10 E-value=0.14 Score=42.78 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhhHHH
Q 018782 45 KTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRS-----IGAEPDAFSYSI 119 (350)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 119 (350)
.+...++..+...|+++++...+..+... .+.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-..
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 34566778888899999999999888876 355888999999999999999999999988754 588888876543
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.31 Score=44.17 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=82.9
Q ss_pred HHHHHHHHccCC-hHHHHHHHHHhhhcCCCCHHHHHH-HHHHHhccC-CHHHHHHHHHHHHhc------CCCC-CH----
Q 018782 14 DQLLHALCKRKH-VKVAHQFFDNAKHEFTPTVKTYSI-LVRGLGDVG-ELSEARKLFDEMLER------KCPV-DI---- 79 (350)
Q Consensus 14 ~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~-~~~~a~~~~~~~~~~------~~~~-~~---- 79 (350)
..++..+...++ .+.|..+|+++....|.....+.. ++..+...+ +--+|.+++.+..+. ..++ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 455666666776 588999999988765544443333 333333332 223455555554321 1111 21
Q ss_pred ------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHh
Q 018782 80 ------LAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMK 141 (350)
Q Consensus 80 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 141 (350)
...+.-...+...|+++-|+++-++.... .+.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 12223345577899999999999999886 23456699999999999999999999998874
No 237
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.06 E-value=3.7e-06 Score=69.99 Aligned_cols=237 Identities=14% Similarity=0.110 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 018782 44 VKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHA 123 (350)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (350)
+.+|..|..+....+++.+|++-|-+ .. |+..|..++....+.|.+++-+.++...++.. .++..=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--AD----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CS----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 34555666666666665555544421 11 44445556666666666666666665555442 223333455666
Q ss_pred HHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHH--------------------------HHHHccCCHHHHHHHHHHHHH
Q 018782 124 FCEANDIHSVFRVLDSMKRYNLVPNVFTYNCII--------------------------RKLCKNEKVEEAYQLLDEMIE 177 (350)
Q Consensus 124 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--------------------------~~~~~~g~~~~a~~~~~~~~~ 177 (350)
|++.++..+..+++. .|+..-...+. .++.+.|++..|.+.-++
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK--- 195 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK--- 195 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT---
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 666555443322211 12222223333 344444555444432221
Q ss_pred cCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHH
Q 018782 178 RGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTY 257 (350)
Q Consensus 178 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 257 (350)
..++.||..+-.+|...+.+..|.-.--.++-. ++ -...++..|...|.+++-..+++..... -.....+|
T Consensus 196 ---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmF 266 (624)
T 3lvg_A 196 ---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMF 266 (624)
T ss_dssp ---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHH
T ss_pred ---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHH
Confidence 226678888888888888887776555554432 21 2334667788888888888888887743 23567778
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHcCCChhHH
Q 018782 258 SVMVHGLCKKKGKLEEACKYFEMMVDE-GIPP------YSSTVEMLRNRLVGLGFLDII 309 (350)
Q Consensus 258 ~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~g~~~~a 309 (350)
+-|.-.|++- ++++..+.++..-.. ++|- ....|..++-.|.+-.+++.|
T Consensus 267 TELaILYsKY--~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 267 TELAILYSKF--KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp HHHHHHHHSS--CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhc--CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 8777666643 566666655543221 2221 223455555555555555544
No 238
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=95.02 E-value=0.35 Score=30.88 Aligned_cols=65 Identities=9% Similarity=0.022 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782 255 STYSVMVHGLCKKKG-KLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 255 ~~~~~ll~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
..|..--..|..... +.-++.+-++.+...++-|++.+....+++|.+.+++..|+++++-++.+
T Consensus 9 eeF~aRy~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 9 EEFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344444444554444 66677777888888888888888888888888888888888888887654
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.85 E-value=2.5 Score=39.37 Aligned_cols=258 Identities=10% Similarity=-0.001 Sum_probs=110.3
Q ss_pred HHhccCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C-----CCHhhHHHHHHH
Q 018782 53 GLGDVGELSEARKLFDEMLERKCPVDI--LAHNSLLEAMCKAGNIDEAHGMLREMRSIGA--E-----PDAFSYSIFIHA 123 (350)
Q Consensus 53 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~~~ 123 (350)
+....|+.++++.+++.....+-..+. ..-..+.-+.+..|..+++..++.......- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 345566666666666654432101122 2222333444455555566666665543210 0 111112222222
Q ss_pred HHhcCC-HhHHHHHHHHHhhCCCCccH--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHhccc
Q 018782 124 FCEAND-IHSVFRVLDSMKRYNLVPNV--FTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILA--YHCDRA 198 (350)
Q Consensus 124 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~ 198 (350)
.+-.|. -+++...+..+.... .+.. ..-.++...++-.|+.+....++..+.+.. +......+.. ++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 222232 234444444443321 1111 111123334445666666666666555431 2222222222 233566
Q ss_pred CHHHHHHHHHHHHhCCCCCChhHH--HHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHH
Q 018782 199 EVNMALRLITRMTKENVMPDRHTY--NMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACK 276 (350)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~ 276 (350)
+.+.+..+++.+.... .|....- ..+.-+|+..|+.....+++..+.+. ...+......+--++... |+.+.+.+
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~-g~~e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLL-RDYTTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTS-SSCSSHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhcc-CCHHHHHH
Confidence 6666666666665531 1211111 12334555667766666677776653 111222222222222222 45555566
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHcCCCh-hHHHHHHHHhhc
Q 018782 277 YFEMMVDEGIPPYSSTVEMLRNRLVGLGFL-DIIEILADKMER 318 (350)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 318 (350)
+++.+.+.+ .|....-..+..+....|.. .++..++..+..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 665555443 33333333333333334433 455666666643
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.81 E-value=0.25 Score=44.77 Aligned_cols=128 Identities=10% Similarity=0.112 Sum_probs=77.6
Q ss_pred HHHHHHHHhcccC-HHHHHHHHHHHHhCCCCCChhHH--HHHHHHHHHcC-CHhHHHHHHHHHHhc------CCCC-CHH
Q 018782 187 YNAILAYHCDRAE-VNMALRLITRMTKENVMPDRHTY--NMVLKLLVRVG-RFDRATEVWESMEKR------GFYP-SVS 255 (350)
Q Consensus 187 ~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~-~~~~a~~~~~~~~~~------~~~p-~~~ 255 (350)
...++..+...++ .+.|..+++.+.... |...++ ..++..+...+ +--+|.+++.+..+. ...+ +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3445555555555 577888888887754 333322 22233222222 223455555444321 1111 111
Q ss_pred HH------HHHHH---HHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhh
Q 018782 256 TY------SVMVH---GLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKME 317 (350)
Q Consensus 256 ~~------~~ll~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 317 (350)
.. ..++. -|+...|+++.|+++-++....- |.+..+|..|..+|...|+++.|+-.++.+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 00 11221 12334499999999999998875 7789999999999999999999999999885
No 241
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.68 E-value=1.7 Score=41.94 Aligned_cols=51 Identities=14% Similarity=0.014 Sum_probs=27.5
Q ss_pred HHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 018782 16 LLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEM 70 (350)
Q Consensus 16 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 70 (350)
++..+...+..+.+.++.... +.++..--.+.+++...|++++|.+.|.+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhhc----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 334444455555554443332 234444455666667777777777777654
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.48 E-value=2 Score=36.52 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=59.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHhcccCHHHHHHHHHHHHh----CCCCCC--hh
Q 018782 152 YNCIIRKLCKNEKVEEAYQLLDEMIER--GANPD---EWSYNAILAYHCDRAEVNMALRLITRMTK----ENVMPD--RH 220 (350)
Q Consensus 152 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~ 220 (350)
...|...+...|++.+|..++..+... +.... ...+..-++.|...+++..|..++..+.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345667777778888888887776532 11111 23455566777778888888877777532 111122 13
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782 221 TYNMVLKLLVRVGRFDRATEVWESMEK 247 (350)
Q Consensus 221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 247 (350)
.+...+..+...+++.+|.+.|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455666677777888887777776653
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.22 E-value=3.6 Score=38.41 Aligned_cols=267 Identities=12% Similarity=0.084 Sum_probs=144.4
Q ss_pred HHccCChHHHHHHHHHhhhcC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHhcCC-------CCCHHHHHHHHHHH
Q 018782 20 LCKRKHVKVAHQFFDNAKHEF-TPTV--KTYSILVRGLGDVGELSEARKLFDEMLERKC-------PVDILAHNSLLEAM 89 (350)
Q Consensus 20 ~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~ 89 (350)
....|+.++++.+++....+. ..+. ..-..+.-+.+..|..+++..++.......- .+....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445677777777777654311 1222 2233334445556665678887777654311 01122223333333
Q ss_pred HhcCC-HHHHHHHHHHHHhCCCCCCHhhHH--HHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHH
Q 018782 90 CKAGN-IDEAHGMLREMRSIGAEPDAFSYS--IFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVE 166 (350)
Q Consensus 90 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 166 (350)
+-.|. -+++.+.+..+.... .+...... .+...+.-.|+.+....++..+.+.. .-+..-+..+.-++...|+.+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGG
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChH
Confidence 33343 246666776666532 11111122 23344556677777778877766532 112222233334455789999
Q ss_pred HHHHHHHHHHHcCCCCCHHH-HH---HHHHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHH
Q 018782 167 EAYQLLDEMIERGANPDEWS-YN---AILAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVW 242 (350)
Q Consensus 167 ~a~~~~~~~~~~~~~~~~~~-~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 242 (350)
.+..+++.+... .+... |. ++.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.+++
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 999888888764 13222 22 34456788999888888999888742 223332233333444567777788888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHhhccCc-HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 018782 243 ESMEKRGFYPSVSTYSVMVHGLCKKKGK-LEEACKYFEMMVDEGIPPYSSTVEMLR 297 (350)
Q Consensus 243 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 297 (350)
..+.+.+ .|....-..+.-+.... |+ ..+++.++..+... ++..+-...+
T Consensus 618 ~~L~~~~-d~~VR~gAalALGli~a-Gn~~~~aid~L~~L~~D---~d~~Vrq~Ai 668 (963)
T 4ady_A 618 QLLSKSH-NAHVRCGTAFALGIACA-GKGLQSAIDVLDPLTKD---PVDFVRQAAM 668 (963)
T ss_dssp TTGGGCS-CHHHHHHHHHHHHHHTS-SSCCHHHHHHHHHHHTC---SSHHHHHHHH
T ss_pred HHHHhcC-CHHHHHHHHHHHHHhcc-CCCcHHHHHHHHHHccC---CCHHHHHHHH
Confidence 7666542 45554444444444333 33 36788888888643 3444443333
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.12 E-value=0.31 Score=40.58 Aligned_cols=74 Identities=14% Similarity=0.094 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHh-----hCCCCccHHHHHHH
Q 018782 81 AHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMK-----RYNLVPNVFTYNCI 155 (350)
Q Consensus 81 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~l 155 (350)
+...++..+...|++.+++..+..+... .+.+...+..+|.++.+.|+..+|++.|+.+. +.|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 4456778888999999999999999876 35688899999999999999999999999874 35999988775443
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.11 E-value=2.6 Score=40.71 Aligned_cols=193 Identities=11% Similarity=0.038 Sum_probs=117.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----C---------------
Q 018782 119 IFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIER----G--------------- 179 (350)
Q Consensus 119 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--------------- 179 (350)
.++..+...+..+.+..+..... .+...--.+..++...|++++|.+.|.+.-.. +
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 34455556666666655444332 23333345678888999999999999764211 0
Q ss_pred ---CCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Q 018782 180 ---ANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPD----RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP 252 (350)
Q Consensus 180 ---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 252 (350)
...-..-|..++..+-+.+.++.+.++-+...+.....+ ...|..+.+.+...|++++|...+-.+.+...
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 001123467788888888999999888877765432212 12578889999999999999999988876533
Q ss_pred CHHHHHHHHHHHhhc-----------cCcHHHHHHHHHHHH-hC-CCCCCHHHHHHHHHHHHcCCChhHHHH-HHHHhhc
Q 018782 253 SVSTYSVMVHGLCKK-----------KGKLEEACKYFEMMV-DE-GIPPYSSTVEMLRNRLVGLGFLDIIEI-LADKMER 318 (350)
Q Consensus 253 ~~~~~~~ll~~~~~~-----------~~~~~~a~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~ 318 (350)
-......++..+|.. .|..++..+++..-. .. .....+.-|..|-.-+...|++..|-. +++.+.+
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 355677777776654 134444444443321 11 112223345555555566677765544 4665543
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.93 E-value=0.73 Score=29.44 Aligned_cols=63 Identities=13% Similarity=0.270 Sum_probs=40.1
Q ss_pred CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782 199 EVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVH 262 (350)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 262 (350)
+.-+..+-+..+....+.|++......+++|.+.+++..|.++++.++.. ..+....|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34455566666666667777777777777777777777777777777643 1222334555544
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.71 E-value=0.61 Score=31.67 Aligned_cols=68 Identities=13% Similarity=0.048 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 018782 41 TPTVKTYSILVRGLGDVGE---LSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI 108 (350)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 108 (350)
.|++.+--.+..++++..+ ..+++.+++.+.+.+..-....+..|.-++.+.|+++.|.+..+.+++.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4555555555555555543 3346666666665542223455555666666777777777776666663
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=93.28 E-value=1 Score=30.50 Aligned_cols=64 Identities=9% Similarity=0.021 Sum_probs=45.8
Q ss_pred HHHHHHHHHhhccC-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782 256 TYSVMVHGLCKKKG-KLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 256 ~~~~ll~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
.|..--..|..... +.-+..+-++.+...++-|++.++...+++|.+.+++..|+++++-++.+
T Consensus 53 eFdaRy~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 53 EFDARWVTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34433334444434 55566777777777788888888888888888888888888888887654
No 249
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.21 E-value=0.0021 Score=54.06 Aligned_cols=216 Identities=9% Similarity=0.074 Sum_probs=123.1
Q ss_pred CHhhHHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 9 SIYDLDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA 88 (350)
Q Consensus 9 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (350)
|+..|..++.+..+.|.+++-..++...++. ...+.+=+.|+.+|++.++..+.++++. .|+..-...+..-
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDr 153 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDR 153 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHH
Confidence 4556667777777777777777777666553 2233444567777777776555443331 1344334455555
Q ss_pred HHhcCCHHHHHHHHHHHHhCC--------------------CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCcc
Q 018782 89 MCKAGNIDEAHGMLREMRSIG--------------------AEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPN 148 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 148 (350)
|...|.++.|.-+|..+.... -..++.||-.+-.+|...+++..|.-.--.+.-+ ++
T Consensus 154 cf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad 230 (624)
T 3lvg_A 154 CYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD 230 (624)
T ss_dssp HHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS
T ss_pred HHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH
Confidence 666666666655554442110 0235667888888888888777665444333321 11
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC-CCC------CChhH
Q 018782 149 VFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE-NVM------PDRHT 221 (350)
Q Consensus 149 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~ 221 (350)
-...++..|-..|.+++.+.+++.-.... ......|+.|.-.|++- ++++..+-++..... +++ -....
T Consensus 231 --eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahL 306 (624)
T 3lvg_A 231 --ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 306 (624)
T ss_dssp --CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTC
T ss_pred --HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 12245566778888888888888877543 34777888888877765 444444433332211 111 01234
Q ss_pred HHHHHHHHHHcCCHhHHH
Q 018782 222 YNMVLKLLVRVGRFDRAT 239 (350)
Q Consensus 222 ~~~l~~~~~~~~~~~~a~ 239 (350)
|.-++-.|.+-.+++.|.
T Consensus 307 W~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 307 WAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhcchhHHHHH
Confidence 555666666666665544
No 250
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.59 E-value=1.6 Score=29.58 Aligned_cols=62 Identities=13% Similarity=0.260 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 018782 200 VNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVH 262 (350)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 262 (350)
.-+..+-+..+....+.|++......+++|.+.+++..|.++++.++.+ ..+....|..++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3345555666666677788888888888888888888888888777743 2233444555554
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.44 E-value=1.7 Score=29.48 Aligned_cols=55 Identities=13% Similarity=0.021 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHH
Q 018782 271 LEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQ 325 (350)
Q Consensus 271 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 325 (350)
..+++.+++.+...+..-....+..+.-++.+.|++++|.+..+.+.+..|.+..
T Consensus 59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 3445555555554431112334444555555555555555555555555444433
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.62 E-value=2.4 Score=30.05 Aligned_cols=126 Identities=10% Similarity=0.001 Sum_probs=65.0
Q ss_pred CCCCcCH--hhHHHHHHHHHccCChHHHHHHHHHhhh--cCCCC-------HHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 018782 4 FGIKPSI--YDLDQLLHALCKRKHVKVAHQFFDNAKH--EFTPT-------VKTYSILVRGLGDVGELSEARKLFDEMLE 72 (350)
Q Consensus 4 ~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 72 (350)
.|+.|-- ..+-.-+..+...|.++.|+-+.+.+.. +..++ ..++..+..++...+++..|...|++.++
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3444433 3344556777788888888888887643 22222 13566677788888888888888888643
Q ss_pred c--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhh
Q 018782 73 R--KCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKR 142 (350)
Q Consensus 73 ~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 142 (350)
. .+.-...+...+. ....... ......+...-..+..+|.+.+++++|+.+++.+..
T Consensus 92 ~~k~l~k~~s~~~~~~---~~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG---NSASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHhcCCCcccccc---ccCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 2 1110111110010 0000000 001223344445577788888888888888877643
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.65 E-value=4.1 Score=28.93 Aligned_cols=124 Identities=7% Similarity=-0.061 Sum_probs=69.5
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHhCC-CCCCh-------hHHHHHHHHHHHcCCHhHHHHHHHHHHhc-CCCCCHHHH
Q 018782 187 YNAILAYHCDRAEVNMALRLITRMTKEN-VMPDR-------HTYNMVLKLLVRVGRFDRATEVWESMEKR-GFYPSVSTY 257 (350)
Q Consensus 187 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~ 257 (350)
+..-+..+...+.++.|+-+...+.... ..|+. .++..+.+++...+++..|...|++..+. ..-+...+.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3344566677788888877776654321 12331 24566777888888888888888886532 111111111
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCc
Q 018782 258 SVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCT 323 (350)
Q Consensus 258 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 323 (350)
...+.. . ..... ......+.+.-..+..+|.+.|++++|+.+++.+....-.+
T Consensus 103 ~~~~~~---~-ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 103 RPSTGN---S-ASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTP 155 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred cccccc---c-CCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence 100100 0 00000 11123455666678899999999999999999987654333
No 254
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.60 E-value=3.7 Score=28.26 Aligned_cols=68 Identities=13% Similarity=0.048 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHhccCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 018782 41 TPTVKTYSILVRGLGDVGE---LSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSI 108 (350)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 108 (350)
.++..+-..+..++++..+ ..+++.+++.+.+.+..-.......|.-++.+.|++++|.++.+.+++.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4566666666666666554 3456667777666543334555556666777777777777777777774
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.57 E-value=5.9 Score=33.43 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 018782 45 KTYSILVRGLGDVGELSEARKLFDEMLERK--CPVDILAHNSLLEAMCKAGNIDEAHGMLREMR 106 (350)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 106 (350)
.++..+...|.+.|+++.|.+.|.++.... ...-...+-.+++.+...+++..+...+.++.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 355667777777777777777777766532 22235556666777777777777777766664
No 256
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.37 E-value=1.5 Score=33.99 Aligned_cols=56 Identities=11% Similarity=0.059 Sum_probs=37.7
Q ss_pred HHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782 18 HALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
..+.+.|++++|+.....-.+..|.|...-..++..+|-.|++++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34556677777777766666666667777777777777777777777766666654
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.28 E-value=4 Score=28.13 Aligned_cols=55 Identities=11% Similarity=0.008 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcH
Q 018782 270 KLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTI 324 (350)
Q Consensus 270 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 324 (350)
+..+++.+++.+...+..-.......+.-++.+.|++++|.++.+.+.+..|.+.
T Consensus 57 di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 57 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp HHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 3445555555555433112333444455556666666666666666655555443
No 258
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.04 E-value=9.7 Score=32.31 Aligned_cols=259 Identities=8% Similarity=0.058 Sum_probs=148.5
Q ss_pred cCChHHHHHHHHHhhh------cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----hc
Q 018782 23 RKHVKVAHQFFDNAKH------EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMC----KA 92 (350)
Q Consensus 23 ~g~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 92 (350)
.|+++.|++.+-.+.+ ..+.+......++..|...|+++...+.+.-+.+..-. .......+++.+. ..
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence 4778888887766543 24456777888999999999999998888776644222 2233334443332 23
Q ss_pred CCHHH--HHHHHHHHHh--CC-CCC---CHhhHHHHHHHHHhcCCHhHHHHHHHHHhhC--CCCcc---HHHHHHHHHHH
Q 018782 93 GNIDE--AHGMLREMRS--IG-AEP---DAFSYSIFIHAFCEANDIHSVFRVLDSMKRY--NLVPN---VFTYNCIIRKL 159 (350)
Q Consensus 93 ~~~~~--a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~ 159 (350)
...+. -..+.+.+.. .| +-. .......|...+...|++.+|..++..+... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33322 1122211111 11 111 1123456788899999999999999998532 22111 34666778899
Q ss_pred HccCCHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHhcccCHHHHHHHHHHHHhC-CCCCChhHHH----HHHHH
Q 018782 160 CKNEKVEEAYQLLDEMIE----RGANPD--EWSYNAILAYHCDRAEVNMALRLITRMTKE-NVMPDRHTYN----MVLKL 228 (350)
Q Consensus 160 ~~~g~~~~a~~~~~~~~~----~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~ 228 (350)
...+++..|..++.++.. ....|+ ...+...+..+...+++.+|...|.++... ....+...+. .++.+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 999999999999998753 112222 234566667777889999988888776543 1112222222 22222
Q ss_pred HHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhc-cCcHHHHHHHHHHHH
Q 018782 229 LVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKK-KGKLEEACKYFEMMV 282 (350)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~~a~~~~~~~~ 282 (350)
..-.+....-..+..........++...+..++.+|... -.+++.+.+.|....
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 222332233333333333322335667788888887542 134566666555433
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.83 E-value=4.3 Score=34.28 Aligned_cols=96 Identities=9% Similarity=-0.080 Sum_probs=68.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHhhh---cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC-CCCCHHHHHHH--
Q 018782 12 DLDQLLHALCKRKHVKVAHQFFDNAKH---EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERK-CPVDILAHNSL-- 85 (350)
Q Consensus 12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l-- 85 (350)
+...+...+.+.|+++.|.+.|.++.. +.......+..+++.+...+++..+...+.+....- -.++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456788899999999999999999865 344567888999999999999999999999876431 11222222211
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHh
Q 018782 86 --LEAMCKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 86 --~~~~~~~~~~~~a~~~~~~~~~ 107 (350)
+..+...+++..|-+.|-....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1223356778887777766654
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.75 E-value=3.6 Score=26.21 Aligned_cols=79 Identities=11% Similarity=-0.068 Sum_probs=37.5
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018782 24 KHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLR 103 (350)
Q Consensus 24 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 103 (350)
...++|..+-+.+..... ...+--.-+..+...|++++|..+.+.+. .||...|..|. -.+.|-.+++..-+.
T Consensus 20 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 345566666555544211 11111122233455566666665544332 45555555443 235555555555555
Q ss_pred HHHhCC
Q 018782 104 EMRSIG 109 (350)
Q Consensus 104 ~~~~~~ 109 (350)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555544
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.72 E-value=3.9 Score=26.10 Aligned_cols=79 Identities=13% Similarity=0.014 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 018782 24 KHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLR 103 (350)
Q Consensus 24 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 103 (350)
...++|..+-+.+..... ...+--.-+..+...|++++|..+.+.+. .||...|..|.. .+.|-.+++..-+.
T Consensus 21 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 345555555555544211 11111122233445566666665554432 345555554432 24455555555555
Q ss_pred HHHhCC
Q 018782 104 EMRSIG 109 (350)
Q Consensus 104 ~~~~~~ 109 (350)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 554443
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=86.61 E-value=13 Score=30.93 Aligned_cols=239 Identities=10% Similarity=0.012 Sum_probs=136.2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHhhh--c-CC--CCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHhcCCCCCHHHH---
Q 018782 12 DLDQLLHALCKRKHVKVAHQFFDNAKH--E-FT--PTVKTYSILVRGLGDV-GELSEARKLFDEMLERKCPVDILAH--- 82 (350)
Q Consensus 12 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~--~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--- 82 (350)
....|...|.+.|+.++..+++..... . ++ ........++..+... +..+.-.++..+..+..-. ...+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 445677889999999999999988754 1 11 2345567788888664 4445555555554432100 11222
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHhcCCHhHHHHHHHHHhhC--CCCccHHHH
Q 018782 83 ---NSLLEAMCKAGNIDEAHGMLREMRSIGAEPD-----AFSYSIFIHAFCEANDIHSVFRVLDSMKRY--NLVPNVFTY 152 (350)
Q Consensus 83 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~ 152 (350)
..++..|...|++.+|.+++..+.+.--..| ...+..-+..|...+++.++...+...... .+.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2578899999999999999999886321212 224555677888999999999999877432 222333222
Q ss_pred H----HHHHHHH-ccCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHhcccCHHHHHHHHH-HHHhCCCCCChh
Q 018782 153 N----CIIRKLC-KNEKVEEAYQLLDEMIERGANPDE------WSYNAILAYHCDRAEVNMALRLIT-RMTKENVMPDRH 220 (350)
Q Consensus 153 ~----~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~ 220 (350)
. .-...+. ..+++..|...|-+..+.--..+. ..|..+.. ..... ..+...++. .....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-Ll~~~-r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-IMLGQ-SDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHTTC-GGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-HHcCC-HHHHHHHhccccccccCCccHH
Confidence 1 1123455 789999998887766432111121 12322222 22222 222222221 111111235555
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHH
Q 018782 221 TYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVS 255 (350)
Q Consensus 221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 255 (350)
.+..++.+| ..+++.+...++...... +..|..
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~ 290 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKKE-LAEDVI 290 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTTT-TTTSHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHHH-HhcChH
Confidence 566666654 467887777777665432 444544
No 263
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.61 E-value=8.5 Score=28.33 Aligned_cols=53 Identities=17% Similarity=0.106 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Q 018782 200 VNMALRLITRMTKENVMPD-RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP 252 (350)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 252 (350)
...+.++|..|...|+-.. ...|......+...|++.+|..+|+..++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4566666666665544322 2345555566666666666666666666665555
No 264
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.05 E-value=11 Score=27.81 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=27.7
Q ss_pred HhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC
Q 018782 235 FDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPP 288 (350)
Q Consensus 235 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~ 288 (350)
...+.++|..|...|+--....|-.--..+....|++.+|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 556666666666555544433333222223333366666666666666555444
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.36 E-value=8.2 Score=29.93 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=28.3
Q ss_pred HHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhC
Q 018782 229 LVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDE 284 (350)
Q Consensus 229 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 284 (350)
..+.|++++++.....-++.. +-|...=..++.-+|.. |++++|.+=++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~-G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCID-GDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHh
Confidence 345566666666555555442 12344444455555544 6666666666555554
No 266
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=77.99 E-value=6.7 Score=30.35 Aligned_cols=21 Identities=19% Similarity=0.407 Sum_probs=12.7
Q ss_pred HHHHHHHccCChHHHHHHHHH
Q 018782 15 QLLHALCKRKHVKVAHQFFDN 35 (350)
Q Consensus 15 ~l~~~~~~~g~~~~a~~~~~~ 35 (350)
+.+...++.|+++....+++.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT
T ss_pred hHHHHHHHcCCHHHHHHHHHc
Confidence 344455667777766666654
No 267
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=76.62 E-value=41 Score=29.96 Aligned_cols=151 Identities=8% Similarity=-0.011 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHH
Q 018782 164 KVEEAYQLLDEMIERGANPDEWSYNAI----LAYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRAT 239 (350)
Q Consensus 164 ~~~~a~~~~~~~~~~~~~~~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 239 (350)
+.+.|...+....+... .+......+ .......+...++...+...... ..+.......+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 55666666666654321 232222222 22222333233444444443332 133333334444445567777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHh------------CCCCC-------CH--------HH
Q 018782 240 EVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVD------------EGIPP-------YS--------ST 292 (350)
Q Consensus 240 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~------------~~~~~-------~~--------~~ 292 (350)
..|..|......-+...|. +-+++... |+.++|..+|..+.. .|.++ +. ..
T Consensus 306 ~~~~~l~~~~~~~~r~~YW-~~ra~~~~-g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~ 383 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYW-QADLLLER-GREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGP 383 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHH-HHHHHHHT-TCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSH
T ss_pred HHHHHccccccccHhHHHH-HHHHHHHc-CCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccCh
Confidence 7777665421111111222 22232333 777777777666532 12111 00 01
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782 293 VEMLRNRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 293 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
-...+..+...|....|...+..+.+.
T Consensus 384 ~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 384 EMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 122345566778888888777776654
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=75.24 E-value=30 Score=27.65 Aligned_cols=167 Identities=15% Similarity=0.106 Sum_probs=90.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHHhCCCCCCHhhHHHHH
Q 018782 46 TYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG----MLREMRSIGAEPDAFSYSIFI 121 (350)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~ 121 (350)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|-+ +.+-+.+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34455555666677777776665422 22344566544444 345555667777777777777
Q ss_pred HHHHhcCCHh-HHHHHHHHH----hhCC--CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 018782 122 HAFCEANDIH-SVFRVLDSM----KRYN--LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYH 194 (350)
Q Consensus 122 ~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 194 (350)
..+.....-+ .-.++++.+ .+.| ...++.....+...|.+.|++.+|...|-. +-.-+...+..++.-+
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w 175 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDW 175 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHH
Confidence 7766543211 122333333 2222 123667788888888899988888876631 1111244444444433
Q ss_pred hcc---cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 018782 195 CDR---AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESME 246 (350)
Q Consensus 195 ~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 246 (350)
... +...++ +...-..++ .|...++...|..+++...
T Consensus 176 ~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 176 LCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred HHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 332 222221 112222233 3456788888888888765
No 269
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=75.08 E-value=31 Score=27.83 Aligned_cols=168 Identities=11% Similarity=0.109 Sum_probs=90.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCCHhhHHHHH
Q 018782 46 TYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGM----LREMRSIGAEPDAFSYSIFI 121 (350)
Q Consensus 46 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~ 121 (350)
.|.++..-|.+.+++++|++++-.-.. .+.+.|+...+-++ ++-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344555666777888888777654221 23344554433333 34444556677777766677
Q ss_pred HHHHhcCCHh-HHHHHHHHH----hhCC--CCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 018782 122 HAFCEANDIH-SVFRVLDSM----KRYN--LVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYH 194 (350)
Q Consensus 122 ~~~~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 194 (350)
..+.....-+ .-..+.+.+ .+.| ..-+......+...|.+.+++.+|...|- . |-.+....+..++.-+
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew 177 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW 177 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence 6666554311 112222222 2222 23456677778888899999888887762 2 3333335665555444
Q ss_pred hcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHh
Q 018782 195 CDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEK 247 (350)
Q Consensus 195 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 247 (350)
...+... .++...-..++ .|...++...|..+++.+.+
T Consensus 178 ~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 178 YKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 3333211 12222333333 45567888888887766553
No 270
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=75.02 E-value=11 Score=26.77 Aligned_cols=53 Identities=4% Similarity=0.031 Sum_probs=22.8
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHH
Q 018782 274 ACKYFEMMVDEGIPP-YSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQE 326 (350)
Q Consensus 274 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 326 (350)
+..+|..|...|+-. -+..|......+...|++.+|.++|+.-.+.+..|...
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 334444444443322 22334444444444444444444444444444444333
No 271
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=73.70 E-value=5.6 Score=30.81 Aligned_cols=56 Identities=14% Similarity=0.156 Sum_probs=26.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 018782 49 ILVRGLGDVGELSEARKLFDEMLERKCPVDIL---AHNSLLEAMCKAGNIDEAHGMLREMRSIGAEP 112 (350)
Q Consensus 49 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 112 (350)
..+...++.|+.+....+++ .|..++.. .-.+.+...+..|+.+- ++.+.+.|..+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~ 65 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADP 65 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCT
T ss_pred hHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCC
Confidence 44555566777665554443 34333211 11234445556666543 34444455443
No 272
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=73.27 E-value=28 Score=26.44 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=41.3
Q ss_pred HHHHHHccCChHHHHHHHHHhhh---cCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 018782 16 LLHALCKRKHVKVAHQFFDNAKH---EFTP----TVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEA 88 (350)
Q Consensus 16 l~~~~~~~g~~~~a~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 88 (350)
-++.+....+|++|.++.++... +.++ ........+..-.....-.-+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 35666777788888888777644 2221 1111122222222222222233333333 22 3344445555566
Q ss_pred HHhcCCHHHHHHHHHHH
Q 018782 89 MCKAGNIDEAHGMLREM 105 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~~~ 105 (350)
+.+.|+.++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 66666666666665544
No 273
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=72.98 E-value=25 Score=26.08 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=13.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 018782 86 LEAMCKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~ 107 (350)
+..|.+.|.+++|.+++++...
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHhcchHHHHHHHHHHhc
Confidence 3445666666666666666654
No 274
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=72.87 E-value=22 Score=25.16 Aligned_cols=51 Identities=10% Similarity=0.118 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCCC-hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCC
Q 018782 203 ALRLITRMTKENVMPD-RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPS 253 (350)
Q Consensus 203 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~ 253 (350)
+.++|..|...++-.. ...|......+...|++.+|.++|+..++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4455555555544322 23344555555566666666666666665555553
No 275
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=72.05 E-value=22 Score=24.78 Aligned_cols=76 Identities=13% Similarity=0.125 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHHH
Q 018782 251 YPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEGIPP-YSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELAN 329 (350)
Q Consensus 251 ~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (350)
+-|..-...-|. |+... +++..+|..|...|+-. -+..|......+...|++++|.++++.-.+.+..|...+..
T Consensus 65 knD~RyLklWl~-ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 140 (152)
T 4a1g_A 65 HNDPRFISYCLK-FAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQ 140 (152)
T ss_dssp TTCHHHHHHHHH-HHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHH
T ss_pred cCCHHHHHHHHH-HHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 445555444443 33332 23777888887776544 45567777777778888888888888887777777666554
Q ss_pred H
Q 018782 330 A 330 (350)
Q Consensus 330 ~ 330 (350)
.
T Consensus 141 ~ 141 (152)
T 4a1g_A 141 Q 141 (152)
T ss_dssp H
T ss_pred H
Confidence 3
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=71.16 E-value=17 Score=23.17 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=9.4
Q ss_pred HcCCChhHHHHHHHHhhccCC
Q 018782 301 VGLGFLDIIEILADKMERSTS 321 (350)
Q Consensus 301 ~~~g~~~~a~~~~~~~~~~~~ 321 (350)
.+.|..+++...+.++..++.
T Consensus 79 ~rlGl~s~le~rL~~la~sg~ 99 (115)
T 2uwj_G 79 WHLGLGAALDRRLAGLGGSSD 99 (115)
T ss_dssp HHTTCHHHHHHHHHHHHTCSS
T ss_pred HhcccHHHHHHHHHHHHhCCC
Confidence 344444444444444444433
No 277
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=70.46 E-value=18 Score=23.12 Aligned_cols=51 Identities=12% Similarity=0.205 Sum_probs=22.9
Q ss_pred HHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHHHHHHHHHHHhCC
Q 018782 228 LLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEEACKYFEMMVDEG 285 (350)
Q Consensus 228 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~ 285 (350)
.+...|++++|..+.+... .||...|..+-.. +.|-.+++...+.++-..|
T Consensus 49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~---rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCEY---RLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH---HHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH---hcccHHHHHHHHHHHHhCC
Confidence 3444555555554444332 3455554444332 2244444444444444444
No 278
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=69.93 E-value=18 Score=27.08 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHcCCChhHHHHHHHHhhccCCCcHHHHHH
Q 018782 273 EACKYFEMMVDEGIPP-YSSTVEMLRNRLVGLGFLDIIEILADKMERSTSCTIQELAN 329 (350)
Q Consensus 273 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 329 (350)
.+..+|..|...||-. -...|......+...|++.+|..+|+.-.+.+..|...+..
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~ 189 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQ 189 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHH
Confidence 5556666666665433 34456666666667777777777777766666666555443
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=68.36 E-value=33 Score=25.49 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=9.1
Q ss_pred hccCCHHHHHHHHHHHHhc
Q 018782 55 GDVGELSEARKLFDEMLER 73 (350)
Q Consensus 55 ~~~~~~~~a~~~~~~~~~~ 73 (350)
+..|+.+.+..+++.+.+.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 4445555555555444433
No 280
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.07 E-value=46 Score=26.86 Aligned_cols=142 Identities=15% Similarity=0.067 Sum_probs=81.5
Q ss_pred HHHHhccCCHHHHHHHH----HHHHhcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHH----hCC--CCCCHhhHHH
Q 018782 51 VRGLGDVGELSEARKLF----DEMLERKCPVDILAHNSLLEAMCKAGNID-EAHGMLREMR----SIG--AEPDAFSYSI 119 (350)
Q Consensus 51 ~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~ 119 (350)
...+.+.|+...+-++. +-+.+.+++++......++..+.....-+ .-..+.+++. +.| ..-|+.....
T Consensus 62 A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ 141 (336)
T 3lpz_A 62 SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHV 141 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHH
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Confidence 34455667766655554 55556788888888888888877655421 1123333333 222 3346677788
Q ss_pred HHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC
Q 018782 120 FIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAE 199 (350)
Q Consensus 120 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 199 (350)
+...|.+.+++.+|...|- . |-.++...|..++.-+...+...+ ++...-..++. |.-.++
T Consensus 142 ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL~-yL~l~n 202 (336)
T 3lpz_A 142 VGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVLP-YLLVAN 202 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHHH-HHHTTC
T ss_pred HHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHHH-HHHhCC
Confidence 8899999999999888872 2 323444666555544443332211 12223333333 444567
Q ss_pred HHHHHHHHHHHH
Q 018782 200 VNMALRLITRMT 211 (350)
Q Consensus 200 ~~~a~~~~~~~~ 211 (350)
...|..+++...
T Consensus 203 ~~~A~~~~~~f~ 214 (336)
T 3lpz_A 203 VRAANTAYRIFT 214 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777665544
No 281
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=62.33 E-value=58 Score=25.98 Aligned_cols=175 Identities=9% Similarity=0.036 Sum_probs=98.4
Q ss_pred HHHHccCChHHHHHHHHHhhhc------CCCCHHHHHHHHHHHhccCCHHHHHHH----HHHHHhcCCCCCHHHHHHHHH
Q 018782 18 HALCKRKHVKVAHQFFDNAKHE------FTPTVKTYSILVRGLGDVGELSEARKL----FDEMLERKCPVDILAHNSLLE 87 (350)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~ 87 (350)
+.....|++=+|.+.+..+... ...-......-...+.+.|+...|-++ ++-..+.+.+++......++.
T Consensus 21 ~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4445567777777777765321 111122233334455667887776664 455566788999888888888
Q ss_pred HHHhcCCHH-HHHHHHHHHH----hCC--CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHH
Q 018782 88 AMCKAGNID-EAHGMLREMR----SIG--AEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLC 160 (350)
Q Consensus 88 ~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (350)
.+.....-+ .-.++++.+. +.| ...++.....+...|.+.+++.+|...|-. |-.-+...+..++--+.
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHH
Confidence 876643211 1233444443 222 224677788889999999999998887741 11113445555444333
Q ss_pred cc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHH
Q 018782 161 KN---EKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMT 211 (350)
Q Consensus 161 ~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 211 (350)
.. |...++ +...-..++. |.-.++...|..+++...
T Consensus 177 ~~~~~~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 177 CQVDDIEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHTTCCCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHH
T ss_pred HhcCCCCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHH
Confidence 33 333332 1112222333 344577777777777654
No 282
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=60.48 E-value=93 Score=27.73 Aligned_cols=117 Identities=10% Similarity=0.011 Sum_probs=74.4
Q ss_pred cCHHHHHHHHHHHHhCCCCCChhHHHHHHH----HHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhccCcHHH
Q 018782 198 AEVNMALRLITRMTKENVMPDRHTYNMVLK----LLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKKKGKLEE 273 (350)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 273 (350)
.+.+.|...+....... ..+......+-. .....+...++...+...... .++.....-.+....+. |+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~-~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGT-GDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHH-TCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHC-CCHHH
Confidence 47788999888876543 234333332322 333344345566666665443 23443333444443444 99999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 018782 274 ACKYFEMMVDEGIPPYSSTVEMLRNRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 274 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
|...|+.|.... .....-...+.+++...|+.++|..+|+++.+.
T Consensus 304 a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~ 348 (618)
T 1qsa_A 304 LNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (618)
T ss_dssp HHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 999999986643 234555667788899999999999999999864
No 283
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.46 E-value=84 Score=27.21 Aligned_cols=64 Identities=9% Similarity=0.027 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 018782 45 KTYSILVRGLGDVGELSEARKLFDEMLERKC-PVD---ILAHNSLLEAMCKAGNIDEAHGMLREMRSI 108 (350)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 108 (350)
..+|.+++.|...+.++.|..+..+..--.. .++ ...+..+.+.+.-.+++.+|.+.+......
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4456666666666666666666665531000 001 111122344455566666666666665543
No 284
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=59.41 E-value=42 Score=23.40 Aligned_cols=50 Identities=12% Similarity=0.049 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCCC-hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Q 018782 203 ALRLITRMTKENVMPD-RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP 252 (350)
Q Consensus 203 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 252 (350)
+.++|..|...|+-.. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5556666655544322 2344555555566666666666666666555555
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=58.35 E-value=75 Score=25.96 Aligned_cols=76 Identities=13% Similarity=0.141 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhc-cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 018782 222 YNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKK-KGKLEEACKYFEMMVDEGIPPYSSTVEMLRN 298 (350)
Q Consensus 222 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 298 (350)
...++.-|...|+.++|.+.++++..-.+. .......+..++-+. ....+...+++..+...|+-+.......+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 456667777777777777777777532111 122233333333322 1134556677777776665554444444433
No 286
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=58.21 E-value=49 Score=23.75 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=15.9
Q ss_pred HHHHHcCCChhHHHHHHHHhhccCC
Q 018782 297 RNRLVGLGFLDIIEILADKMERSTS 321 (350)
Q Consensus 297 ~~~~~~~g~~~~a~~~~~~~~~~~~ 321 (350)
...+...|-.++...+|..+++.+|
T Consensus 215 a~~yf~lg~~d~s~~lf~~lR~kDP 239 (242)
T 3kae_A 215 ARRYFNLGMNDKSKACFELVRRKDP 239 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHhcccchhHHHHHHHHHhcCC
Confidence 3445566777777777776666554
No 287
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=57.92 E-value=36 Score=25.16 Aligned_cols=52 Identities=12% Similarity=0.020 Sum_probs=23.3
Q ss_pred HHHHHccCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 018782 17 LHALCKRKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDE 69 (350)
Q Consensus 17 ~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 69 (350)
+...+..|+.+....+++.-.. -...+..-+ +.+...+..|+.+-+..+++.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~ 59 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGE-TALHIAALYDNLEAAMVLMEA 59 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHhcCCCcccCCCCCC-CHHHHHHHcCCHHHHHHHHHc
Confidence 3444566676666666654211 111111112 223334455666555555543
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=57.80 E-value=45 Score=23.24 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=31.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCC--HHHHHHHHHHHHhcCCC
Q 018782 14 DQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGE--LSEARKLFDEMLERKCP 76 (350)
Q Consensus 14 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 76 (350)
..++.-|...|+.++|.+.++.+....-....+...+..++-+.++ .+.+..++..+.+.++-
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4566666677777777777777653211122223333333333221 33455556555555443
No 289
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=57.50 E-value=82 Score=26.15 Aligned_cols=233 Identities=9% Similarity=-0.014 Sum_probs=133.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhc-CCCC---CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhhH--
Q 018782 45 KTYSILVRGLGDVGELSEARKLFDEMLER-KCPV---DILAHNSLLEAMCKAG-NIDEAHGMLREMRSIGAEPDAFSY-- 117 (350)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~-- 117 (350)
.....|...|.+.|+.++..+++.....- +.-| .......++..+.... ..+.-.++.....+..- -+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45678899999999999999998876532 1111 2344556777776643 33444444444443211 112233
Q ss_pred ----HHHHHHHHhcCCHhHHHHHHHHHhhCCCCc-----cHHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHH
Q 018782 118 ----SIFIHAFCEANDIHSVFRVLDSMKRYNLVP-----NVFTYNCIIRKLCKNEKVEEAYQLLDEMIER--GANPDEWS 186 (350)
Q Consensus 118 ----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~ 186 (350)
.-++..|...|++.+|..++..+.+.--.. -..++..-++.|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 257889999999999999998886531111 1345666678888999999999999887643 23234433
Q ss_pred HHHH----HHHHh-cccCHHHHHHHHHHHHhCCCCCC------hhHHHHHHHHHHHcCCHhHHHHHHH-HHHhcCCCCCH
Q 018782 187 YNAI----LAYHC-DRAEVNMALRLITRMTKENVMPD------RHTYNMVLKLLVRVGRFDRATEVWE-SMEKRGFYPSV 254 (350)
Q Consensus 187 ~~~l----l~~~~-~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~p~~ 254 (350)
-..+ ...+. ..+++..|...|-+..+.-.... ...|..+ +-.-.++..+...++. .....-..|..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL--~aLl~~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL--CKIMLGQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HHHHTTCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH--HHHHcCCHHHHHHHhccccccccCCccH
Confidence 2221 22345 68899999888876543210111 1122222 2222344333333322 21111134666
Q ss_pred HHHHHHHHHHhhccCcHHHHHHHHHHHH
Q 018782 255 STYSVMVHGLCKKKGKLEEACKYFEMMV 282 (350)
Q Consensus 255 ~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 282 (350)
..+..++.+|. . +++.+...++....
T Consensus 257 ~~l~~L~~a~~-~-~dl~~f~~iL~~~~ 282 (394)
T 3txn_A 257 DAMKSVAEASH-K-RSLADFQAALKEYK 282 (394)
T ss_dssp HHHHHHHHHHH-T-TCHHHHHHHHHHST
T ss_pred HHHHHHHHHHH-h-CCHHHHHHHHHHHH
Confidence 66777777753 3 77777766666543
No 290
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.45 E-value=1e+02 Score=26.68 Aligned_cols=64 Identities=11% Similarity=0.095 Sum_probs=46.9
Q ss_pred HhhHHHHHHHHHccCChHHHHHHHHHhhhc--CCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782 10 IYDLDQLLHALCKRKHVKVAHQFFDNAKHE--FTPTV---KTYSILVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 10 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
...++.+++.|...+.++.|..+..+..-. ..++. .-+.-+.+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 345677888999999999999999987531 11121 22334567778889999999999998876
No 291
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.45 E-value=44 Score=22.44 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=10.7
Q ss_pred HHHHHHHHcCCHhHHHHHHHHH
Q 018782 224 MVLKLLVRVGRFDRATEVWESM 245 (350)
Q Consensus 224 ~l~~~~~~~~~~~~a~~~~~~~ 245 (350)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444445555555555444
No 292
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=54.78 E-value=23 Score=26.57 Aligned_cols=52 Identities=15% Similarity=0.279 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCC
Q 018782 201 NMALRLITRMTKENVMPD-RHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYP 252 (350)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p 252 (350)
+.+..+|..|...|+-.. ...|......+...|++.+|..+|+.-++.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 345556666666554322 2345555566666666666666666666655555
No 293
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=53.61 E-value=5.5 Score=30.56 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=14.6
Q ss_pred HHHHcCCChhHHHHHHHHhhcc
Q 018782 298 NRLVGLGFLDIIEILADKMERS 319 (350)
Q Consensus 298 ~~~~~~g~~~~a~~~~~~~~~~ 319 (350)
...++.|+.+-+..++++-...
T Consensus 230 ~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 230 MMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhCCCc
Confidence 3445678888777777776544
No 294
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=53.34 E-value=6.1 Score=30.29 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=5.5
Q ss_pred cCCHHHHHHHHHHH
Q 018782 57 VGELSEARKLFDEM 70 (350)
Q Consensus 57 ~~~~~~a~~~~~~~ 70 (350)
.|+.+....+++.+
T Consensus 15 ~g~~~~v~~ll~~l 28 (260)
T 3jxi_A 15 RGSPDGLEGLLSFL 28 (260)
T ss_dssp HTCGGGGTTHHHHH
T ss_pred hCCHHHHHHHHHHH
Confidence 34444433333333
No 295
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=52.54 E-value=16 Score=26.40 Aligned_cols=15 Identities=7% Similarity=0.355 Sum_probs=8.2
Q ss_pred HccCChHHHHHHHHH
Q 018782 21 CKRKHVKVAHQFFDN 35 (350)
Q Consensus 21 ~~~g~~~~a~~~~~~ 35 (350)
+..|+.+....++..
T Consensus 13 ~~~g~~~~v~~ll~~ 27 (201)
T 3hra_A 13 ANQRDTKKVKEILQD 27 (201)
T ss_dssp HHTTCHHHHHHHHTC
T ss_pred HHhccHHHHHHHHHc
Confidence 445566655555543
No 296
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=52.38 E-value=95 Score=25.36 Aligned_cols=25 Identities=0% Similarity=0.135 Sum_probs=16.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHhhh
Q 018782 14 DQLLHALCKRKHVKVAHQFFDNAKH 38 (350)
Q Consensus 14 ~~l~~~~~~~g~~~~a~~~~~~~~~ 38 (350)
..++.-|...|+.++|...++.+..
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 3456666667777777777777653
No 297
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=52.06 E-value=17 Score=26.61 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=17.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 018782 85 LLEAMCKAGNIDEAHGMLREMRSI 108 (350)
Q Consensus 85 l~~~~~~~~~~~~a~~~~~~~~~~ 108 (350)
.+..|.+.|.+++|.++|++....
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHccchHHHHHHHHHHhcC
Confidence 455688888888888888886543
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=52.05 E-value=36 Score=24.45 Aligned_cols=14 Identities=0% Similarity=0.302 Sum_probs=7.2
Q ss_pred hccCCHHHHHHHHH
Q 018782 55 GDVGELSEARKLFD 68 (350)
Q Consensus 55 ~~~~~~~~a~~~~~ 68 (350)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 44555555555543
No 299
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=51.49 E-value=57 Score=22.54 Aligned_cols=36 Identities=6% Similarity=0.052 Sum_probs=14.6
Q ss_pred cCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 018782 198 AEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVG 233 (350)
Q Consensus 198 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 233 (350)
+..-.|.++++.+.+.+...+..|....++.+...|
T Consensus 40 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 40 GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334444444444444333333333333334444333
No 300
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=50.72 E-value=47 Score=25.79 Aligned_cols=183 Identities=10% Similarity=0.052 Sum_probs=78.8
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhc
Q 018782 51 VRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDA---FSYSIFIHAFCEA 127 (350)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 127 (350)
+...+..|+.+-+..+++. |..++...-.+.+...+..|+.+-+. .+.+.|..++. .-.+ .+...+..
T Consensus 35 L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~d~~g~t-~L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLDDSQFDDKGNT-ALYYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCTTCCCTTSCC-HHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCc-HHHHHHHc
Confidence 3344456766655554443 32222111122344445566655443 33344544332 1222 23334455
Q ss_pred CCHhHHHHHHHHHhhCCCCccHH---HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CH-HHHHHHHHHHhcccCHHH
Q 018782 128 NDIHSVFRVLDSMKRYNLVPNVF---TYNCIIRKLCKNEKVEEAYQLLDEMIERGANP-DE-WSYNAILAYHCDRAEVNM 202 (350)
Q Consensus 128 ~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~-~~~~~ll~~~~~~~~~~~ 202 (350)
|+.+-+..+++. |..++.. -+.+.+...+..|+.+-+. .+.+.|..+ +. ...+ .+...+..|+.+-
T Consensus 106 g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~g~t-~L~~A~~~g~~~~ 176 (285)
T 3kea_A 106 GNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVS----YFLSEIPSTFDLAILLS-CIHITIKNGHVDM 176 (285)
T ss_dssp TCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHH----HHHTTSCTTCCCSTHHH-HHHHHHHTTCHHH
T ss_pred CCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHH----HHHhCCCccccccCCcc-HHHHHHHcChHHH
Confidence 665544444433 3222221 1123334444556654433 333333332 11 2233 3344456677776
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHH
Q 018782 203 ALRLITRMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVST 256 (350)
Q Consensus 203 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 256 (350)
+.-+++.-..-+. .+..-.+..+...+..|+. ++.+.+.+.|..|+...
T Consensus 177 v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 177 MILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 6666655433222 1211122223334445554 34555566666666554
No 301
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=49.77 E-value=63 Score=22.50 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=11.1
Q ss_pred HHHHHHHhcccCHHHHHHHHHHH
Q 018782 188 NAILAYHCDRAEVNMALRLITRM 210 (350)
Q Consensus 188 ~~ll~~~~~~~~~~~a~~~~~~~ 210 (350)
..++.-|...++.++|...++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 33444444445555555555444
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.48 E-value=1.8e+02 Score=27.64 Aligned_cols=47 Identities=6% Similarity=0.019 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccH----HHHHHHHHHHHcc
Q 018782 116 SYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNV----FTYNCIIRKLCKN 162 (350)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 162 (350)
-|..++..+-+.+-++.+.++-+..++.--.-|. ..|..+.++.+..
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 5667777777777777777777766543211122 2455555555443
No 303
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=49.40 E-value=56 Score=23.01 Aligned_cols=57 Identities=12% Similarity=0.066 Sum_probs=28.5
Q ss_pred HcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhC--CCCCChhHHHHHHHHHHHcCC
Q 018782 177 ERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKE--NVMPDRHTYNMVLKLLVRVGR 234 (350)
Q Consensus 177 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~ 234 (350)
+.|.+++. --..++..+...+..-.|.++++.+.+. +...+..|...-++.+...|-
T Consensus 26 ~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 26 QGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 34555433 2334444455555555566666666554 444444444444555555553
No 304
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=49.05 E-value=58 Score=21.87 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=31.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHhcCCC
Q 018782 14 DQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVG--ELSEARKLFDEMLERKCP 76 (350)
Q Consensus 14 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 76 (350)
..++.-|...|+.++|.+.++.+....-....+...+..++-+.+ ..+.+..++..+.+.|+-
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 456666666777777777777765321112222233333333322 134455555555555443
No 305
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=48.93 E-value=1.3e+02 Score=25.74 Aligned_cols=141 Identities=9% Similarity=-0.000 Sum_probs=82.3
Q ss_pred cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 018782 23 RKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGML 102 (350)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 102 (350)
..+.+.|.++-.+. +.|--...|..-...+...|++++|.++--..+.. +-.+..+.+.+-..-..-|+..-.+.+|
T Consensus 342 l~n~~lA~~lA~R~--~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 342 LQNPDLALRMAVRN--NLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp TCCHHHHHHHHHHT--TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred cCCHHHHHHHHHhc--CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 45666666665443 35555666777777888888888888877666543 3446777766665555566667777777
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 018782 103 REMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEM 175 (350)
Q Consensus 103 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 175 (350)
..+.+.| ..+..----+++.-...|+.+-..+++.+ ..+..+...-..+ +..+..-|..+|.+.
T Consensus 419 ~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEeLGDlv-----k~~d~~LAl~IY~~a 482 (494)
T 1bpo_A 419 GILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEELGDLV-----KSVDPTLALSVYLRA 482 (494)
T ss_dssp HHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHHHHHHH-----HHHCSHHHHHHHHHH
T ss_pred HHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHHhHhhh-----hhcCHHHHHHHHHHc
Confidence 7777765 34444333455555566666655555443 2233333322221 333555666666544
No 306
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=48.77 E-value=74 Score=23.07 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=13.1
Q ss_pred CChhHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 018782 217 PDRHTYNMVLKLLVRVGRFDRATEVWESME 246 (350)
Q Consensus 217 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 246 (350)
++..+-...+.++.+.+. ..+...+..+.
T Consensus 155 ~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp SSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 344444445555555554 33333444443
No 307
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=48.06 E-value=61 Score=21.88 Aligned_cols=35 Identities=14% Similarity=-0.004 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 018782 199 EVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVG 233 (350)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 233 (350)
..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555554444444444444444444444
No 308
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.97 E-value=81 Score=23.27 Aligned_cols=86 Identities=16% Similarity=0.160 Sum_probs=41.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh--HHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccHHH--HHHHHHHHH
Q 018782 85 LLEAMCKAGNIDEAHGMLREMRSIGAEPDAFS--YSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNVFT--YNCIIRKLC 160 (350)
Q Consensus 85 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 160 (350)
.+...+..|+.+.+..+++.+.+.|..++... -...+...+..|+.+-+ +.+.+.|..++... -.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCCHHHHHH
Confidence 34455667888877777777666654443221 11233444555665433 33344443332211 012233334
Q ss_pred ccCCHHHHHHHHHH
Q 018782 161 KNEKVEEAYQLLDE 174 (350)
Q Consensus 161 ~~g~~~~a~~~~~~ 174 (350)
..|+.+-+..+++.
T Consensus 88 ~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 88 EHRSPTCLRALLDS 101 (241)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc
Confidence 55666555444443
No 309
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=47.93 E-value=74 Score=22.78 Aligned_cols=28 Identities=4% Similarity=-0.022 Sum_probs=14.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHhcCCCCC
Q 018782 51 VRGLGDVGELSEARKLFDEMLERKCPVD 78 (350)
Q Consensus 51 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 78 (350)
+...+..|+.+.-.++.+.+++.|..++
T Consensus 42 Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 42 LYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 3344445555544555555555554443
No 310
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=47.78 E-value=36 Score=25.19 Aligned_cols=18 Identities=11% Similarity=-0.114 Sum_probs=8.7
Q ss_pred HHHcCCChhHHHHHHHHh
Q 018782 299 RLVGLGFLDIIEILADKM 316 (350)
Q Consensus 299 ~~~~~g~~~~a~~~~~~~ 316 (350)
...+.|+.+-+..+++..
T Consensus 216 ~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHTTCHHHHHHHHHHC
T ss_pred HHHHcCcHHHHHHHHHhh
Confidence 334455555554444443
No 311
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=47.63 E-value=67 Score=22.20 Aligned_cols=59 Identities=15% Similarity=-0.013 Sum_probs=26.9
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccc-CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcCC
Q 018782 175 MIERGANPDEWSYNAILAYHCDRA-EVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVGR 234 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 234 (350)
+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 33444443332 223333333333 444555555555555444444444444455555443
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=46.33 E-value=68 Score=21.95 Aligned_cols=35 Identities=11% Similarity=-0.023 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 018782 199 EVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVG 233 (350)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 233 (350)
..-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 36 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 36 AHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp SCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33444444444444433333333333334444333
No 313
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=46.28 E-value=54 Score=22.52 Aligned_cols=33 Identities=18% Similarity=0.155 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 018782 201 NMALRLITRMTKENVMPDRHTYNMVLKLLVRVG 233 (350)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 233 (350)
-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444444433333333333334444333
No 314
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=45.83 E-value=44 Score=24.66 Aligned_cols=20 Identities=5% Similarity=-0.037 Sum_probs=11.7
Q ss_pred HHHHHccCChHHHHHHHHHh
Q 018782 17 LHALCKRKHVKVAHQFFDNA 36 (350)
Q Consensus 17 ~~~~~~~g~~~~a~~~~~~~ 36 (350)
+...+..|+++....+++.-
T Consensus 10 l~~A~~~g~~~~v~~ll~~~ 29 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILAD 29 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHhc
Confidence 44445566666666666553
No 315
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=45.44 E-value=73 Score=22.00 Aligned_cols=44 Identities=9% Similarity=0.149 Sum_probs=19.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 018782 85 LLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN 128 (350)
Q Consensus 85 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (350)
++..+...+..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33444444444455555555554443334444333344443333
No 316
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.15 E-value=1.2e+02 Score=24.22 Aligned_cols=79 Identities=11% Similarity=0.116 Sum_probs=49.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhc-cCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 018782 222 YNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCKK-KGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRL 300 (350)
Q Consensus 222 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 300 (350)
...++.-|...|+.++|.+.++++..-... .......+..++-+. ....+.+..++..+.+.|+-+.......+.+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 467888888999999999999998632111 123334444444332 123566788888888877666555544444444
Q ss_pred H
Q 018782 301 V 301 (350)
Q Consensus 301 ~ 301 (350)
.
T Consensus 248 ~ 248 (307)
T 2zu6_B 248 N 248 (307)
T ss_dssp H
T ss_pred H
Confidence 3
No 317
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=45.11 E-value=72 Score=21.86 Aligned_cols=56 Identities=11% Similarity=0.074 Sum_probs=31.5
Q ss_pred HHHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 018782 209 RMTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLCK 266 (350)
Q Consensus 209 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 266 (350)
.+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|....+..+..
T Consensus 9 ~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 64 (145)
T 3eyy_A 9 DLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEE 64 (145)
T ss_dssp HHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHH
Confidence 344556665533 344555555555 66777777777766555555555444444443
No 318
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=45.07 E-value=17 Score=20.48 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 018782 166 EEAYQLLDEMIERGANPDEWSYNAILAYH 194 (350)
Q Consensus 166 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 194 (350)
++|.+.|.+|++..-.+...+|.-.+...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 34444444444332223344444444444
No 319
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=44.21 E-value=1.2e+02 Score=24.37 Aligned_cols=63 Identities=10% Similarity=-0.029 Sum_probs=36.6
Q ss_pred HHHHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHhcCCC
Q 018782 13 LDQLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVG--ELSEARKLFDEMLERKCP 76 (350)
Q Consensus 13 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~ 76 (350)
...++.-|...|+.++|.+.++.+..... .......++......+ ..+.+..++..+.+.++-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 35677888889999999999998864211 1122222222222222 234566677777666544
No 320
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=44.09 E-value=85 Score=22.43 Aligned_cols=30 Identities=13% Similarity=0.116 Sum_probs=17.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 018782 85 LLEAMCKAGNIDEAHGMLREMRSIGAEPDA 114 (350)
Q Consensus 85 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 114 (350)
.+...+..|+.+.-.++.+.+++.|..++.
T Consensus 41 ~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 41 ILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 444455556655556666666676655543
No 321
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=42.71 E-value=75 Score=21.41 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=25.2
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 018782 70 MLERKCPVDILAHNSLLEAMCKAG-NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN 128 (350)
Q Consensus 70 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (350)
+.+.|+.++..= ..++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 334444433222 22333333333 44455556666555544444444444444444433
No 322
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=41.15 E-value=48 Score=22.55 Aligned_cols=44 Identities=23% Similarity=0.353 Sum_probs=19.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 018782 50 LVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAG 93 (350)
Q Consensus 50 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 93 (350)
++..+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 33344444444445555555555444444444444444444433
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=41.01 E-value=84 Score=21.48 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=28.1
Q ss_pred HHhCCCCCChhHHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 018782 210 MTKENVMPDRHTYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLC 265 (350)
Q Consensus 210 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 265 (350)
+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+.
T Consensus 13 l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 67 (145)
T 2fe3_A 13 LKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFR 67 (145)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHH
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHH
Confidence 4445555443 233445555555555666666666665544444444444444443
No 324
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=40.86 E-value=73 Score=24.67 Aligned_cols=145 Identities=10% Similarity=0.031 Sum_probs=60.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCCCCccH---HHHHHHHHHHHcc
Q 018782 86 LEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYNLVPNV---FTYNCIIRKLCKN 162 (350)
Q Consensus 86 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 162 (350)
+...+..|+.+.+..++ +.|..++...-...+...+..|+.+-+..++ +.|..++. .-.+. +...+..
T Consensus 35 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~ga~~~~~d~~g~t~-L~~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIVKILL----FSGLDDSQFDDKGNTA-LYYAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHHHHHH----HTTCCTTCCCTTSCCH-HHHHHHT
T ss_pred HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCcH-HHHHHHc
Confidence 33445566665444443 3343333221122344455566655443333 33433221 11222 2333455
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCC-ChhHHHHHHHHHHHcCCHhHH
Q 018782 163 EKVEEAYQLLDEMIERGANPDE---WSYNAILAYHCDRAEVNMALRLITRMTKENVMP-DRHTYNMVLKLLVRVGRFDRA 238 (350)
Q Consensus 163 g~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 238 (350)
|+.+-+.-+++. |..++. ..+...+...+..|+.+-+.. +.+.|..+ +...-...+...+..|+.+-+
T Consensus 106 g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 GNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSY----FLSEIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp TCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHH----HHTTSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHH----HHhCCCccccccCCccHHHHHHHcChHHHH
Confidence 665544444433 322221 111223333445566544333 33333322 111223344455566777666
Q ss_pred HHHHHHHHh
Q 018782 239 TEVWESMEK 247 (350)
Q Consensus 239 ~~~~~~~~~ 247 (350)
..+++.-.+
T Consensus 178 ~~Ll~~gad 186 (285)
T 3kea_A 178 ILLLDYMTS 186 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHcCCC
Confidence 666655443
No 325
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=40.65 E-value=1.7e+02 Score=24.95 Aligned_cols=71 Identities=10% Similarity=0.056 Sum_probs=34.4
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHhhCC
Q 018782 73 RKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHSVFRVLDSMKRYN 144 (350)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 144 (350)
.|++-....|..-...+...|++++|-++-..... |+-.+..|.+.+-..-...|+..-.+.+|..+.+.|
T Consensus 355 ~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 355 NNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred cCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 34444444455555556666666666665554432 233444444433333333344444555555554444
No 326
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=40.38 E-value=53 Score=18.97 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=20.5
Q ss_pred HHHHHHHhhccCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 018782 258 SVMVHGLCKKKGKLEEACKYFEMMVDEGIPPYSSTVEMLRNRLVG 302 (350)
Q Consensus 258 ~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 302 (350)
+.++..++.. .-.+.++..++++.+.| ..+..+|..-++.+++
T Consensus 6 ~Qll~l~Aed-~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 6 NQLYNLVAQD-YALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3444444433 34555555555555555 4444455444444433
No 327
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=39.97 E-value=80 Score=21.79 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=15.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 018782 94 NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAN 128 (350)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 128 (350)
..-.|.++++.+.+.+...+..|..--+..+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555554443334443333344443333
No 328
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=39.37 E-value=53 Score=22.00 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=15.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 018782 57 VGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKA 92 (350)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (350)
.+..-.|.++++.+.+.+...+..|....+..+...
T Consensus 23 ~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 58 (131)
T 2o03_A 23 LDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASS 58 (131)
T ss_dssp CCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHC
Confidence 333444455555554444333444433333333333
No 329
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.22 E-value=53 Score=24.23 Aligned_cols=15 Identities=0% Similarity=0.011 Sum_probs=7.8
Q ss_pred HHccCChHHHHHHHH
Q 018782 20 LCKRKHVKVAHQFFD 34 (350)
Q Consensus 20 ~~~~g~~~~a~~~~~ 34 (350)
.+..|+++....+++
T Consensus 16 A~~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 16 ATQYGIYERCRELVE 30 (240)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCChHHHHHHHH
Confidence 344555555555544
No 330
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=39.06 E-value=99 Score=21.71 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=19.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcC
Q 018782 85 LLEAMCKAGNIDEAHGMLREMRSI--GAEPDAFSYSIFIHAFCEAN 128 (350)
Q Consensus 85 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 128 (350)
++..+...+..-.|.++++.+.+. +...+..|..--+..+...|
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444455555555443 33334444333444444444
No 331
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=38.84 E-value=2.2e+02 Score=25.66 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=22.4
Q ss_pred HHHHHHHccCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHh
Q 018782 15 QLLHALCKRKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLG 55 (350)
Q Consensus 15 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 55 (350)
.+|-.|.+.|.+++|.++.+............|...+..|+
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC-
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHH
Confidence 34556677777777777777665443333345555555555
No 332
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=38.67 E-value=55 Score=22.25 Aligned_cols=42 Identities=19% Similarity=0.082 Sum_probs=17.5
Q ss_pred HHHhcccCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 018782 192 AYHCDRAEVNMALRLITRMTKENVMPDRHTYNMVLKLLVRVG 233 (350)
Q Consensus 192 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 233 (350)
..+...++.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 21 ~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 21 AALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 333333334444444444444433334444333344444443
No 333
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=38.52 E-value=78 Score=25.13 Aligned_cols=104 Identities=12% Similarity=0.102 Sum_probs=44.4
Q ss_pred HHHHHHHhCCCCCCHhh--HHHHHHHHHhcCCHhHHHHHHHHHhhCCCCc---cHHHHHHHHHHHHccCCHHHHHHHHHH
Q 018782 100 GMLREMRSIGAEPDAFS--YSIFIHAFCEANDIHSVFRVLDSMKRYNLVP---NVFTYNCIIRKLCKNEKVEEAYQLLDE 174 (350)
Q Consensus 100 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~ 174 (350)
.+.+.+.+.|..++... -...+...+..|..+.+..+++. .|..+ |..-.+.|. ..++.|+.+ +.+.
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~-~A~~~g~~~----iv~~ 291 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALL-LAVELKLKK----IAEL 291 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHH-HHHHTTCHH----HHHH
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHH-HHHHcCCHH----HHHH
Confidence 34444556665443221 11233444556666655444332 12111 111112222 234455554 3344
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCC
Q 018782 175 MIERGANPDEWSYNAILAYHCDRAEVNMALRLITRMTKENVMPD 218 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 218 (350)
+.+.|..++..+ .+...++.|+.+ +.+.+++.|-.||
T Consensus 292 Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 292 LCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp HHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred HHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCC
Confidence 455666555443 233334556654 3444555665554
No 334
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.22 E-value=1e+02 Score=21.70 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHhcCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 018782 58 GELSEARKLFDEMLERKCPV--DILAHNSLLE-A-----MCKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 58 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 107 (350)
|++=+|.++++..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77777777777776654444 4455555665 2 2346777777777776654
No 335
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=38.07 E-value=1.8e+02 Score=24.54 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=27.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccC-----HHHHHHHHHHHHhCCC
Q 018782 162 NEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAE-----VNMALRLITRMTKENV 215 (350)
Q Consensus 162 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 215 (350)
.++.+.|+..+.+|.+.|..|....-..+..+.-.-|. ...|...++....-|.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 45667777777777766655444333333333333332 2334444444444443
No 336
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=37.86 E-value=2e+02 Score=24.83 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=41.6
Q ss_pred cCChHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 018782 23 RKHVKVAHQFFDNAKHEFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCK 91 (350)
Q Consensus 23 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (350)
...++.|..+|..+....|.+...||.|.-.....|+.-+|.-.|-+.... ..|-..+...|...+.+
T Consensus 165 ~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALSK 232 (497)
T ss_dssp TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHHHH
Confidence 445566777777766666666777777777666666666666555555443 23455566656555543
No 337
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=37.18 E-value=1.1e+02 Score=21.61 Aligned_cols=52 Identities=4% Similarity=-0.055 Sum_probs=31.5
Q ss_pred cccCHHHHHHHHHHHHhCCCCC--ChhHHHHHHH-H-----HHHcCCHhHHHHHHHHHHh
Q 018782 196 DRAEVNMALRLITRMTKENVMP--DRHTYNMVLK-L-----LVRVGRFDRATEVWESMEK 247 (350)
Q Consensus 196 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~~ 247 (350)
..|++-+|-++++.+-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477777777777766654334 3445555555 2 2346777777777777654
No 338
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=36.99 E-value=1.2e+02 Score=21.90 Aligned_cols=114 Identities=10% Similarity=0.071 Sum_probs=62.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH-HHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHH
Q 018782 89 MCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFIH-AFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEE 167 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 167 (350)
+.+-.+++.+.-+-.-+.. +..-|..|+. .+.-.|.+..++-++...- ..+..-|..+ +|-+..++..
T Consensus 12 s~kY~dYdt~~fLsa~L~~-----~~~eY~lL~~I~LyyngEY~R~Lf~L~~lN----T~Ts~YYk~L--Cy~klKdYkk 80 (242)
T 3kae_A 12 SIRYRDYETAIFLAACLLP-----CKPEYRMLMSIVLYLNGEYTRALFHLHKLN----TCTSKYYESL--CYKKKKDYKK 80 (242)
T ss_dssp HHHTTCHHHHHHHHHHHC---------CTHHHHHHHHHHTTCHHHHHHHHHTCC----BHHHHHHHHH--HHHHTTCHHH
T ss_pred HhhcccccHHHHHHHHHcc-----CChHHHhhhhhhhhhcchHhHHHHHHHhcc----hHHHHHHHHH--HHHHHHHHHH
Confidence 3455566665544444432 2223444433 2334677777766654321 1223333333 5667888999
Q ss_pred HHHHHHHHHHcCCC--CCH---------------HHHHHHHHHHhcccCHHHHHHHHHHHHhC
Q 018782 168 AYQLLDEMIERGAN--PDE---------------WSYNAILAYHCDRAEVNMALRLITRMTKE 213 (350)
Q Consensus 168 a~~~~~~~~~~~~~--~~~---------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 213 (350)
|...++.+....+. ||+ ..++.+...|.+.|+.++|+..+..--..
T Consensus 81 A~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 81 AIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 99888888855433 221 22555556666778888888877765543
No 339
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=36.04 E-value=1.2e+02 Score=21.71 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=7.3
Q ss_pred ChhHHHHHHHHHHHcCC
Q 018782 218 DRHTYNMVLKLLVRVGR 234 (350)
Q Consensus 218 ~~~~~~~l~~~~~~~~~ 234 (350)
+..+-...+.++...|.
T Consensus 151 ~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 33344444444444443
No 340
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=35.91 E-value=1.2e+02 Score=21.70 Aligned_cols=172 Identities=13% Similarity=0.102 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 018782 42 PTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFI 121 (350)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 121 (350)
++.......+.++...+..+....+. ++.. .++...-...+.++...+..+ +...+..+.. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 34455555555555555433333333 3332 235555555666666666543 3344444443 35666666666
Q ss_pred HHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHH
Q 018782 122 HAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVN 201 (350)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 201 (350)
.++...++.+.... +..+.. .++..+-...+.++.+.+..+ +...+..+.. .++...-...+.++.+.+..
T Consensus 98 ~aL~~~~~~~~~~~-L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~~- 168 (201)
T 3ltj_A 98 VALGQIGDERAVEP-LIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGGE- 168 (201)
T ss_dssp HHHHHHCCGGGHHH-HHHHTT---CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCSH-
T ss_pred HHHHHhCcHHHHHH-HHHHHc---CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCch-
Confidence 67777776543333 333333 256666666677777766543 3344444433 24666666666777666654
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 018782 202 MALRLITRMTKENVMPDRHTYNMVLKLLVRVG 233 (350)
Q Consensus 202 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 233 (350)
.+...+..+... ++...-...+.++.+.+
T Consensus 169 ~~~~~L~~~l~d---~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 169 RVRAAMEKLAET---GTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhC---CCHHHHHHHHHHHHHHH
Confidence 455555555542 45555555555555443
No 341
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=35.49 E-value=60 Score=23.78 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhhhcCCCCHHH-----HHHHHHHHhccCCHHHHHHHHHHHHhc
Q 018782 26 VKVAHQFFDNAKHEFTPTVKT-----YSILVRGLGDVGELSEARKLFDEMLER 73 (350)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~ 73 (350)
++.|+.+|+.+....++-... -...+..|.+.|.+++|.++|++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 345556666655433222222 234456788999999999999987654
No 342
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=34.58 E-value=1.1e+02 Score=25.92 Aligned_cols=59 Identities=5% Similarity=0.105 Sum_probs=38.8
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHHhCCCCCChh--------HHH-HHHHHHHHcCCHhHHHHHHHHH
Q 018782 187 YNAILAYHCDRAEVNMALRLITRMTKENVMPDRH--------TYN-MVLKLLVRVGRFDRATEVWESM 245 (350)
Q Consensus 187 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~-~l~~~~~~~~~~~~a~~~~~~~ 245 (350)
.+.+...|.+.++...+..+++.+...+..|+.. +|. .+.+.+...+++.+|.+.+..+
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A 246 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEA 246 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHH
Confidence 5667778888888888888888877765533322 222 3445566677777777766655
No 343
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=34.28 E-value=62 Score=21.68 Aligned_cols=11 Identities=18% Similarity=0.223 Sum_probs=4.3
Q ss_pred HHHHHHHHHHh
Q 018782 202 MALRLITRMTK 212 (350)
Q Consensus 202 ~a~~~~~~~~~ 212 (350)
.|.++++.+.+
T Consensus 28 sa~ei~~~l~~ 38 (131)
T 2o03_A 28 SAQELHDELRR 38 (131)
T ss_dssp EHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 33334433333
No 344
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=33.28 E-value=59 Score=22.34 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=7.7
Q ss_pred HHccCChHHHHHHHH
Q 018782 20 LCKRKHVKVAHQFFD 34 (350)
Q Consensus 20 ~~~~g~~~~a~~~~~ 34 (350)
.++.|+.+....+++
T Consensus 15 A~~~g~~~~v~~ll~ 29 (165)
T 3twr_A 15 AAKAGDVETVKKLCT 29 (165)
T ss_dssp HHHHTCHHHHHHHCC
T ss_pred HHHhCCHHHHHHHHH
Confidence 344555555555544
No 345
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.83 E-value=1.2e+02 Score=24.32 Aligned_cols=18 Identities=6% Similarity=0.333 Sum_probs=10.0
Q ss_pred HHHHccCChHHHHHHHHH
Q 018782 18 HALCKRKHVKVAHQFFDN 35 (350)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~ 35 (350)
...+..|+.+.+..+++.
T Consensus 25 ~~Aa~~g~~~~v~~Ll~~ 42 (364)
T 3ljn_A 25 HVAARKGQTDEVRRLIET 42 (364)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 334455666666665544
No 346
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=31.16 E-value=66 Score=17.32 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=11.0
Q ss_pred ChhHHHHHHHHhhccCCCcHHH
Q 018782 305 FLDIIEILADKMERSTSCTIQE 326 (350)
Q Consensus 305 ~~~~a~~~~~~~~~~~~~~~~~ 326 (350)
+...|.++++++.+++..|+..
T Consensus 8 Dv~RaiELle~lq~sgevp~~K 29 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVNNAK 29 (53)
T ss_dssp HHHHHHHHHHHHGGGSSSTHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcHH
Confidence 3445555555555554444443
No 347
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=30.87 E-value=79 Score=21.02 Aligned_cols=51 Identities=12% Similarity=0.028 Sum_probs=29.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 018782 47 YSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHG 100 (350)
Q Consensus 47 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 100 (350)
|--.|...+..++.+-|+++++-..+.| +...|.+.+..|...=+++-+++
T Consensus 35 ykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 35 YKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp SSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 3444555556666666666666666554 55666666666665555555444
No 348
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=30.71 E-value=3.5e+02 Score=25.54 Aligned_cols=90 Identities=12% Similarity=0.064 Sum_probs=49.8
Q ss_pred HHHHHHhccCC---HHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 018782 49 ILVRGLGDVGE---LSEARKLFDEMLER----KCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIFI 121 (350)
Q Consensus 49 ~l~~~~~~~~~---~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 121 (350)
.++...|..|. .+.|.+.|+..... .++|+.. ..+.....+.|..++-..++++..... +..--..++
T Consensus 691 ~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll 765 (909)
T 4fke_A 691 NAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLR 765 (909)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHH
Confidence 34444555554 34566677665543 1444433 222333345566666666666666542 333345567
Q ss_pred HHHHhcCCHhHHHHHHHHHhhC
Q 018782 122 HAFCEANDIHSVFRVLDSMKRY 143 (350)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~~~~~ 143 (350)
.+++...+.....++++.....
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~ 787 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNP 787 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCT
T ss_pred HHhCCCCCHHHHHHHHHHHhCC
Confidence 7777777777777777766543
No 349
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=30.63 E-value=75 Score=21.14 Aligned_cols=48 Identities=17% Similarity=0.183 Sum_probs=26.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCHHHHHH
Q 018782 155 IIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEVNMALR 205 (350)
Q Consensus 155 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 205 (350)
.|...+.+++.+-|.++++-..+.| +...|.+.+-.|...=+++-+++
T Consensus 38 AietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 38 AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp HHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 4444555556666666665555543 44555555555555555554443
No 350
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=30.59 E-value=98 Score=19.16 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=19.2
Q ss_pred hHHHHHHHHHhhhcCCCCHHHHHHHHHHHh
Q 018782 26 VKVAHQFFDNAKHEFTPTVKTYSILVRGLG 55 (350)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 55 (350)
++.|..+.++++..+..++..|...+..+.
T Consensus 10 ~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~ 39 (89)
T 1g1e_B 10 FNHAINYVNKIKNRFQGQPDIYKAFLEILH 39 (89)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 456777777777666666666666665543
No 351
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.54 E-value=1.2e+02 Score=24.26 Aligned_cols=17 Identities=18% Similarity=0.089 Sum_probs=10.7
Q ss_pred HHHcCCChhHHHHHHHH
Q 018782 299 RLVGLGFLDIIEILADK 315 (350)
Q Consensus 299 ~~~~~g~~~~a~~~~~~ 315 (350)
..+..|+.+-+..+++.
T Consensus 250 ~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 250 LSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHHHTCCHHHHHHHHHH
T ss_pred HHHHhChHHHHHHHHHc
Confidence 34456777777666665
No 352
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.47 E-value=86 Score=19.70 Aligned_cols=35 Identities=14% Similarity=0.302 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHhH
Q 018782 94 NIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEANDIHS 132 (350)
Q Consensus 94 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 132 (350)
..+.|.++++.+...| +.+|..++.++...|+...
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~L 86 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDML 86 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHH
Confidence 4455555555555443 1245555555544444333
No 353
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=30.34 E-value=89 Score=18.55 Aligned_cols=34 Identities=21% Similarity=0.041 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 018782 200 VNMALRLITRMTKENVMPDRHTYNMVLKLLVRVG 233 (350)
Q Consensus 200 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 233 (350)
.-.+.++++.+.+.+...+..|....+..+...|
T Consensus 33 ~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3344445544444433334444444444444443
No 354
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.29 E-value=96 Score=20.48 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=19.1
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 018782 66 LFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRS 107 (350)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 107 (350)
+|+.+.+..+.|+...--.-+..+...++++.|.++...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444444433332222223334455666666666655543
No 355
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=29.92 E-value=53 Score=24.30 Aligned_cols=17 Identities=12% Similarity=0.085 Sum_probs=11.5
Q ss_pred ccCcHHHHHHHHHHHHh
Q 018782 267 KKGKLEEACKYFEMMVD 283 (350)
Q Consensus 267 ~~~~~~~a~~~~~~~~~ 283 (350)
..|+...+.++.+.+.+
T Consensus 219 ~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 219 LNSQVWSALQMSKALQD 235 (237)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 33777777777777654
No 356
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=29.85 E-value=1.7e+02 Score=21.70 Aligned_cols=20 Identities=10% Similarity=0.011 Sum_probs=10.4
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 018782 57 VGELSEARKLFDEMLERKCP 76 (350)
Q Consensus 57 ~~~~~~a~~~~~~~~~~~~~ 76 (350)
..+++.|+-++-+|++.|-.
T Consensus 48 GSDpDAALywLaRMl~~GED 67 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGED 67 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHHHHHcCCC
Confidence 34555555555555555444
No 357
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.67 E-value=3.7e+02 Score=25.52 Aligned_cols=49 Identities=14% Similarity=0.042 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcccCHHHHHHHHHHHHhCCCCCCh----hHHHHHHHHHHHcC
Q 018782 185 WSYNAILAYHCDRAEVNMALRLITRMTKENVMPDR----HTYNMVLKLLVRVG 233 (350)
Q Consensus 185 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 233 (350)
.-|..++..+-+.+-++.+.++-+..++.-..-|. ..|..+.++.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 46788888888899999988888888765222222 35667777766554
No 358
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=28.69 E-value=3.3e+02 Score=24.58 Aligned_cols=17 Identities=0% Similarity=-0.328 Sum_probs=14.8
Q ss_pred HcCCChhHHHHHHHHhh
Q 018782 301 VGLGFLDIIEILADKME 317 (350)
Q Consensus 301 ~~~g~~~~a~~~~~~~~ 317 (350)
...|+++.|.+.++++.
T Consensus 549 ~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 549 YFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHTTCHHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHHhCC
Confidence 77899999999998874
No 359
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=28.50 E-value=1.9e+02 Score=21.84 Aligned_cols=20 Identities=15% Similarity=0.027 Sum_probs=10.3
Q ss_pred HHHHHhcCCHhHHHHHHHHH
Q 018782 121 IHAFCEANDIHSVFRVLDSM 140 (350)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~ 140 (350)
+..+....++++|...+++.
T Consensus 25 LDv~IA~r~feeAv~lle~~ 44 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDI 44 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHH
Confidence 44445555555555555544
No 360
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=28.47 E-value=1.8e+02 Score=21.43 Aligned_cols=95 Identities=16% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC-----HhHHHHHHHHHhhCCCCccHHHHH
Q 018782 82 HNSLLEAMCK---AGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAFCEAND-----IHSVFRVLDSMKRYNLVPNVFTYN 153 (350)
Q Consensus 82 ~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~ 153 (350)
+..+|+++.+ ..+.+.|+-.+.+|++.| .|.-..-..++.+.-..|. ...|...++.....|.+--.....
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~La 92 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLA 92 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHH
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH
Q 018782 154 CIIRKLCKNEKVEEAYQLLDEMIE 177 (350)
Q Consensus 154 ~l~~~~~~~g~~~~a~~~~~~~~~ 177 (350)
..+--++..-+-..+...+....+
T Consensus 93 qaviyLA~aPKSNs~y~A~~~A~~ 116 (204)
T 2r9g_A 93 DVVVDLCLSPKSNSAYMALDAALA 116 (204)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCccHHHHHHHHHHHH
No 361
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=28.17 E-value=1.7e+02 Score=21.07 Aligned_cols=173 Identities=12% Similarity=0.094 Sum_probs=104.0
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH
Q 018782 41 TPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPVDILAHNSLLEAMCKAGNIDEAHGMLREMRSIGAEPDAFSYSIF 120 (350)
Q Consensus 41 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 120 (350)
.++...-...+..+...+..+ +...+..+... ++...-...+.++...+..+ +...+..+.. .++...-...
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a 101 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSA 101 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 356777777777777777643 34444444443 46677677777777777643 4444444443 3566666777
Q ss_pred HHHHHhcCCHhHHHHHHHHHhhCCCCccHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcccCH
Q 018782 121 IHAFCEANDIHSVFRVLDSMKRYNLVPNVFTYNCIIRKLCKNEKVEEAYQLLDEMIERGANPDEWSYNAILAYHCDRAEV 200 (350)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 200 (350)
+.+....++.+. ...+..+.. .++..+-...+.++.+.|..+ +...+..+.. .++...-...+.++.+.+.
T Consensus 102 ~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~- 172 (211)
T 3ltm_A 102 AVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG- 172 (211)
T ss_dssp HHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-
T ss_pred HHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-
Confidence 777777777544 444444443 357777777777877777654 4444444443 3566677777777777776
Q ss_pred HHHHHHHHHHHhCCCCCChhHHHHHHHHHHHcC
Q 018782 201 NMALRLITRMTKENVMPDRHTYNMVLKLLVRVG 233 (350)
Q Consensus 201 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 233 (350)
..+...+..+... ++..+-...+.++...+
T Consensus 173 ~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 173 ERVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 4455566666553 45555555555555443
No 362
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=28.07 E-value=84 Score=22.48 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 018782 221 TYNMVLKLLVRVGRFDRATEVWESMEKRGFYPSVSTYSVMVHGLC 265 (350)
Q Consensus 221 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 265 (350)
.++.++.+++.-.-++.+...+.++...|. .+..+|-.-++.++
T Consensus 113 l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~La 156 (174)
T 2p22_A 113 GLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELA 156 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 345555555555555555555555554443 34444444444443
No 363
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=27.94 E-value=78 Score=17.79 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=13.6
Q ss_pred cCcHHHHHHHHHHHHhCC-CCC
Q 018782 268 KGKLEEACKYFEMMVDEG-IPP 288 (350)
Q Consensus 268 ~~~~~~a~~~~~~~~~~~-~~~ 288 (350)
.-+++.|...|.++...| +||
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~ 54 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPE 54 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCG
T ss_pred CCCHHHHHHHHHHHHHcCCCCH
Confidence 357777777777776544 444
No 364
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=27.32 E-value=1.6e+02 Score=20.73 Aligned_cols=25 Identities=8% Similarity=0.238 Sum_probs=15.9
Q ss_pred HHHHHHHHhcccCHHHHHHHHHHHH
Q 018782 187 YNAILAYHCDRAEVNMALRLITRMT 211 (350)
Q Consensus 187 ~~~ll~~~~~~~~~~~a~~~~~~~~ 211 (350)
...++.-|...++.++|...++++.
T Consensus 13 ~~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 13 LTPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3445566666677777777776654
No 365
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=26.93 E-value=1.8e+02 Score=21.13 Aligned_cols=21 Identities=19% Similarity=0.259 Sum_probs=13.5
Q ss_pred HHHHHHccCChHHHHHHHHHh
Q 018782 16 LLHALCKRKHVKVAHQFFDNA 36 (350)
Q Consensus 16 l~~~~~~~g~~~~a~~~~~~~ 36 (350)
.+...+..|+.+-+..+++.-
T Consensus 40 ~L~~A~~~g~~~~v~~Ll~~~ 60 (232)
T 2rfa_A 40 ALHIAALYDNLEAAMVLMEAA 60 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHcC
Confidence 344455677887777777653
No 366
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=26.71 E-value=84 Score=17.65 Aligned_cols=14 Identities=29% Similarity=0.230 Sum_probs=5.7
Q ss_pred CCHhHHHHHHHHHH
Q 018782 233 GRFDRATEVWESME 246 (350)
Q Consensus 233 ~~~~~a~~~~~~~~ 246 (350)
|+++.|...+-+|.
T Consensus 37 gdvd~aI~~LL~m~ 50 (59)
T 1wgl_A 37 GNKDAAINSLLQMG 50 (59)
T ss_dssp TCHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHcCc
Confidence 33444444444433
No 367
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.98 E-value=2e+02 Score=23.19 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 018782 82 HNSLLEAMCKAGNIDEAHGMLREMR 106 (350)
Q Consensus 82 ~~~l~~~~~~~~~~~~a~~~~~~~~ 106 (350)
...++.-|...|+.++|...++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567788888899998888888774
No 368
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=25.95 E-value=72 Score=21.10 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHhCCCC-CChhHHHHHHHHH
Q 018782 199 EVNMALRLITRMTKENVM-PDRHTYNMVLKLL 229 (350)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 229 (350)
.+++|.+.+..+++.-+. -.+..||..+..+
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~L 73 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKAL 73 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 455555555555543221 1345566555544
No 369
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=25.84 E-value=4.3e+02 Score=24.96 Aligned_cols=13 Identities=15% Similarity=0.100 Sum_probs=7.2
Q ss_pred CHhhHHHHHHHHH
Q 018782 9 SIYDLDQLLHALC 21 (350)
Q Consensus 9 ~~~~~~~l~~~~~ 21 (350)
|...|..++..+.
T Consensus 571 d~~~w~~l~~~L~ 583 (909)
T 4fke_A 571 DEDNWRMIQHQLQ 583 (909)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555666665543
No 370
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=25.09 E-value=2.3e+02 Score=22.28 Aligned_cols=21 Identities=19% Similarity=0.407 Sum_probs=14.6
Q ss_pred HHHHHHHccCChHHHHHHHHH
Q 018782 15 QLLHALCKRKHVKVAHQFFDN 35 (350)
Q Consensus 15 ~l~~~~~~~g~~~~a~~~~~~ 35 (350)
+.+...++.|+++.+..+++.
T Consensus 27 t~L~~Av~~g~~~~V~~LL~~ 47 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLEG 47 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHC
Confidence 344455678888888777765
No 371
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.98 E-value=1.3e+02 Score=22.55 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=10.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC
Q 018782 89 MCKAGNIDEAHGMLREMRSIGA 110 (350)
Q Consensus 89 ~~~~~~~~~a~~~~~~~~~~~~ 110 (350)
.+..|+.+.+..+++.+.+.|.
T Consensus 9 A~~~g~~~~v~~ll~~l~~~g~ 30 (256)
T 2etb_A 9 VVSRGVPEELTGLLEYLRWNSK 30 (256)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHHcCC
Confidence 3445555555455554444443
No 372
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=24.83 E-value=2.1e+02 Score=21.02 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=18.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 018782 91 KAGNIDEAHGMLREMRSIGAEPDAFSYSIFIHAF 124 (350)
Q Consensus 91 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (350)
+..+.+.|+-.+.+|++.|-.|.-..-..++.+.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3466777777777777766544433333333333
No 373
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=24.58 E-value=32 Score=19.24 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=15.9
Q ss_pred ChHHHHHHHHHhhhcCCCCHH
Q 018782 25 HVKVAHQFFDNAKHEFTPTVK 45 (350)
Q Consensus 25 ~~~~a~~~~~~~~~~~~~~~~ 45 (350)
+++.|...|...+..+||++.
T Consensus 34 d~~~A~~~F~~~~~~IP~eAF 54 (57)
T 2jp7_A 34 NYEVAIKGFQSSMNGIPREAF 54 (57)
T ss_dssp CSHHHHHHHHHSTTTSCHHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHh
Confidence 788899999887656776543
No 374
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=24.15 E-value=2.2e+02 Score=21.16 Aligned_cols=15 Identities=13% Similarity=0.146 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhCCCC
Q 018782 97 EAHGMLREMRSIGAE 111 (350)
Q Consensus 97 ~a~~~~~~~~~~~~~ 111 (350)
.+..++..+.+.|+-
T Consensus 94 ~i~~vl~~L~~~g~l 108 (221)
T 3d5l_A 94 FVEPILKKLRGQQLI 108 (221)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCC
Confidence 334444444444443
No 375
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=23.52 E-value=1.6e+02 Score=19.24 Aligned_cols=12 Identities=8% Similarity=0.072 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 018782 200 VNMALRLITRMT 211 (350)
Q Consensus 200 ~~~a~~~~~~~~ 211 (350)
+.+|+.-+++..
T Consensus 4 ~~~al~~L~e~~ 15 (119)
T 1wty_A 4 LARAVERLKAAL 15 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 376
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.87 E-value=2.4e+02 Score=21.07 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=10.1
Q ss_pred CHHHHHHHHHHHHhcCCCCC
Q 018782 59 ELSEARKLFDEMLERKCPVD 78 (350)
Q Consensus 59 ~~~~a~~~~~~~~~~~~~~~ 78 (350)
++..-..+++.+...++...
T Consensus 34 dFrq~rdi~eall~~~l~~~ 53 (235)
T 3bu8_A 34 DFRQIRDIMQALLVRPLGKE 53 (235)
T ss_dssp HHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHhCccccc
Confidence 44445555555554544433
No 377
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=22.46 E-value=1.5e+02 Score=18.53 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=7.6
Q ss_pred CCHHHHHHHHHHHHHc
Q 018782 163 EKVEEAYQLLDEMIER 178 (350)
Q Consensus 163 g~~~~a~~~~~~~~~~ 178 (350)
|++=+|-++++.+-..
T Consensus 15 g~~~eaHEvlE~~W~~ 30 (94)
T 2cwy_A 15 GRYYEVHEVLEPYWLK 30 (94)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhh
Confidence 4444454444444433
No 378
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=21.86 E-value=41 Score=24.74 Aligned_cols=19 Identities=11% Similarity=0.340 Sum_probs=11.0
Q ss_pred HHHHccCChHHHHHHHHHh
Q 018782 18 HALCKRKHVKVAHQFFDNA 36 (350)
Q Consensus 18 ~~~~~~g~~~~a~~~~~~~ 36 (350)
...+..|+.+....+++.-
T Consensus 7 ~~A~~~g~~~~v~~Ll~~~ 25 (228)
T 2dzn_A 7 HQACMENEFFKVQELLHSK 25 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 3445566666666666553
No 379
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=21.78 E-value=1.3e+02 Score=20.87 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHhCCCC-CChhHHHHHHHHH
Q 018782 199 EVNMALRLITRMTKENVM-PDRHTYNMVLKLL 229 (350)
Q Consensus 199 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 229 (350)
.+++|.+.+..+++.-+. -.+..||..+..+
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~L 104 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKAL 104 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 455666666665543221 1335566665544
No 380
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=21.72 E-value=1.4e+02 Score=17.83 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 018782 26 VKVAHQFFDNAKHEFTPTVKTYSILVRGL 54 (350)
Q Consensus 26 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 54 (350)
++.|..+++.++..+..++..|...+...
T Consensus 4 ~~dA~~yl~~VK~~F~~~p~~Y~~FL~im 32 (77)
T 2czy_A 4 VEDALTYLDQVKIRFGSDPATYNGFLEIM 32 (77)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 45566666666665555555655555433
No 381
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.66 E-value=1.1e+02 Score=20.47 Aligned_cols=19 Identities=16% Similarity=0.301 Sum_probs=12.7
Q ss_pred HHHHHccCChHHHHHHHHH
Q 018782 17 LHALCKRKHVKVAHQFFDN 35 (350)
Q Consensus 17 ~~~~~~~g~~~~a~~~~~~ 35 (350)
+...+..|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445566777777777766
No 382
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=21.43 E-value=4.4e+02 Score=26.28 Aligned_cols=78 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHc---------------cCChHHHHHHHHHhhh-cCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 018782 14 DQLLHALCK---------------RKHVKVAHQFFDNAKH-EFTPTVKTYSILVRGLGDVGELSEARKLFDEMLERKCPV 77 (350)
Q Consensus 14 ~~l~~~~~~---------------~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 77 (350)
+.|++++++ ....+...+.|.++.+ -...+.......+......+++..|++++.++.+. +|
T Consensus 1238 ~~l~~al~~k~~ala~~~~~~~~~~~~~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~ 1315 (1354)
T 3lxu_X 1238 NTLIEALSKKGIAVAKLAVLDDCIKDSLAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KR 1315 (1354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSGGGHHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cc
Q ss_pred CHHHHHHHHHHHHhcC
Q 018782 78 DILAHNSLLEAMCKAG 93 (350)
Q Consensus 78 ~~~~~~~l~~~~~~~~ 93 (350)
+...|..++..+...|
T Consensus 1316 ~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1316 TRDHFVELAAINGALG 1331 (1354)
T ss_dssp CHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHcC
No 383
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=20.78 E-value=1.7e+02 Score=18.38 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHH
Q 018782 292 TVEMLRNRLVGLGFLDIIEILADK 315 (350)
Q Consensus 292 ~~~~l~~~~~~~g~~~~a~~~~~~ 315 (350)
.+....+.+.+.|++++|++..++
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHH
Confidence 344555666677777777655444
Done!