BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018784
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 141/305 (46%), Gaps = 27/305 (8%)
Query: 17 RPVVD-LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF 75
RP D ++++ + DG + S D + + ETG+ + + H+ V C ++ +
Sbjct: 612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 671
Query: 76 SASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFS-EDTHLLL-TGGFEKILRIFDLN 132
A+ SAD K+WD+ TG H++ EH V C F+ + HLLL TG + L+++DLN
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 133 RPDAPPREVG--NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--- 187
+ + G NS R D +L+SC+ G +RLWD RS +++ K
Sbjct: 732 QKECRNTMFGHTNSVNHCR----FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Query: 188 ----SPVTSAEV-------SRDGRYITTADGSSVKFWDANHFGLVKGYNM--PCNTESAS 234
P EV S DG I A + V +D + GL+ + +
Sbjct: 788 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847
Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
P ++ + V +++ + ++ +GH VH V FSP G S+ + S+D TI
Sbjct: 848 FSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTI 906
Query: 295 RIWQT 299
R+W+T
Sbjct: 907 RVWET 911
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 105/217 (48%), Gaps = 27/217 (12%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAV--WSCCLDA 71
GH + V + + T DG L+S+S+DS + N +TGD++ + H+ V + D+
Sbjct: 1001 GHKKAVRHIQF---TADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS 1056
Query: 72 NALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRI-- 128
L S S D T K+W+ +TG + F H+ V +CA S D + +K +I
Sbjct: 1057 RLL---SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113
Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
FDL +P E+ +G +R A+ D +L++ D+G +R+W+ G+++ + S
Sbjct: 1114 FDLL---SPLHELKGHNGCVRCSAF-SLDGILLATGDDNGEIRIWNVSDGQLLHSCAPIS 1169
Query: 189 P----------VTSAEVSRDGRYITTADGSSVKFWDA 215
VT S D + + +A G +K+W+
Sbjct: 1170 VEEGTATHGGWVTDVCFSPDSKTLVSA-GGYLKWWNV 1205
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 161 LSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITTADG-SSVKFWDANHF 218
++SC ++++ A +G K++ + V S D YI T VK WD+
Sbjct: 630 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 689
Query: 219 GLVKGYNMPC-NTESASLEPKLGNIFIA-GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCV 276
LV Y+ K ++ +A G D ++ ++D + E GH V+
Sbjct: 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 749
Query: 277 RFSPGGESYASGSEDGTIRIWQTNPPNHEEN 307
RFSP E AS S DGT+R+W N ++
Sbjct: 750 RFSPDDELLASCSADGTLRLWDVRSANERKS 780
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 13/189 (6%)
Query: 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93
L+S S D + + N TG F H+G V SC + ++A +S SAD TAK+W
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN--------RPDAPPREVGNS 144
H + H VR AFS D LL TG +RI++++ P +
Sbjct: 1118 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATH 1177
Query: 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT 203
G + V + +T++S+ G ++ W+ +G QT T + + VS D R
Sbjct: 1178 GGWVTDVCFSPDSKTLVSA---GGYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYV 1234
Query: 204 TADGSSVKF 212
T D + +
Sbjct: 1235 TVDNLGILY 1243
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 14/202 (6%)
Query: 105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164
V C S + G + ++I +L VG+ ++R + + +T++SS
Sbjct: 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK-AVRHIQFTADGKTLISSS 1022
Query: 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDA------NHF 218
DS +++W+ ++G V + V + +D R ++ + +VK W+ F
Sbjct: 1023 EDSV-IQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF 1081
Query: 219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRF 278
+G + C S + + F + D ++ F + KGH+G V C F
Sbjct: 1082 TCHQGTVLSCAISSDATK------FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF 1135
Query: 279 SPGGESYASGSEDGTIRIWQTN 300
S G A+G ++G IRIW +
Sbjct: 1136 SLDGILLATGDDNGEIRIWNVS 1157
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 99/254 (38%), Gaps = 20/254 (7%)
Query: 59 GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL 118
GHK AV A+ S S D ++W+ TGD H+ V+ +D+ LL
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR-LL 1059
Query: 119 TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG 178
+ F+ ++++++ R+ G++ + A + SD T SS + ++W
Sbjct: 1060 SWSFDGTVKVWNV-ITGRIERDFTCHQGTVLSCA-ISSDATKFSSTSADKTAKIWSFDLL 1117
Query: 179 KIVQTLETKS-PVTSAEVSRDGRYITTADGS-SVKFWDANHFGLVKGYNMPCNTESAS-- 234
+ L+ + V + S DG + T D + ++ W+ + L+ P + E +
Sbjct: 1118 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC-APISVEEGTAT 1176
Query: 235 ---------LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESY 285
P + AGG W +V + + N + +H SP +Y
Sbjct: 1177 HGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDSSQTFYTNGTNLKKIH---VSPDFRTY 1233
Query: 286 ASGSEDGTIRIWQT 299
+ G + I Q
Sbjct: 1234 VTVDNLGILYILQV 1247
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 141/305 (46%), Gaps = 27/305 (8%)
Query: 17 RPVVD-LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF 75
RP D ++++ + DG + S D + + ETG+ + + H+ V C ++ +
Sbjct: 619 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY 678
Query: 76 SASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFS-EDTHLLL-TGGFEKILRIFDLN 132
A+ SAD K+WD+ TG H++ EH V C F+ + HLLL TG + L+++DLN
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 133 RPDAPPREVG--NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--- 187
+ + G NS R D +L+SC+ G +RLWD RS +++ K
Sbjct: 739 QKECRNTMFGHTNSVNHCR----FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Query: 188 ----SPVTSAEV-------SRDGRYITTADGSSVKFWDANHFGLVKGYNM--PCNTESAS 234
P EV S DG I A + V +D + GL+ + +
Sbjct: 795 LSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 854
Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
P ++ + V +++ + ++ +GH VH V FSP G S+ + S+D TI
Sbjct: 855 FSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTI 913
Query: 295 RIWQT 299
R+W+T
Sbjct: 914 RVWET 918
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 105/217 (48%), Gaps = 27/217 (12%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAV--WSCCLDA 71
GH + V + + T DG L+S+S+DS + N +TGD++ + H+ V + D+
Sbjct: 1008 GHKKAVRHIQF---TADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS 1063
Query: 72 NALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRI-- 128
L S S D T K+W+ +TG + F H+ V +CA S D + +K +I
Sbjct: 1064 RLL---SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1120
Query: 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS 188
FDL +P E+ +G +R A+ D +L++ D+G +R+W+ G+++ + S
Sbjct: 1121 FDLL---SPLHELKGHNGCVRCSAF-SLDGILLATGDDNGEIRIWNVSDGQLLHSCAPIS 1176
Query: 189 P----------VTSAEVSRDGRYITTADGSSVKFWDA 215
VT S D + + +A G +K+W+
Sbjct: 1177 VEEGTATHGGWVTDVCFSPDSKTLVSA-GGYLKWWNV 1212
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 161 LSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITTADG-SSVKFWDANHF 218
++SC ++++ A +G K++ + V S D YI T VK WD+
Sbjct: 637 IASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG 696
Query: 219 GLVKGYNMPC-NTESASLEPKLGNIFIA-GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCV 276
LV Y+ K ++ +A G D ++ ++D + E GH V+
Sbjct: 697 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHC 756
Query: 277 RFSPGGESYASGSEDGTIRIWQTNPPNHEEN 307
RFSP E AS S DGT+R+W N ++
Sbjct: 757 RFSPDDELLASCSADGTLRLWDVRSANERKS 787
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 13/189 (6%)
Query: 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93
L+S S D + + N TG F H+G V SC + ++A +S SAD TAK+W
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL 1124
Query: 94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN--------RPDAPPREVGNS 144
H + H VR AFS D LL TG +RI++++ P +
Sbjct: 1125 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATH 1184
Query: 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT 203
G + V + +T++S+ G ++ W+ +G QT T + + VS D R
Sbjct: 1185 GGWVTDVCFSPDSKTLVSA---GGYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYV 1241
Query: 204 TADGSSVKF 212
T D + +
Sbjct: 1242 TVDNLGILY 1250
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 14/202 (6%)
Query: 105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164
V C S + G + ++I +L VG+ ++R + + +T++SS
Sbjct: 971 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK-AVRHIQFTADGKTLISSS 1029
Query: 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDA------NHF 218
DS +++W+ ++G V + V + +D R ++ + +VK W+ F
Sbjct: 1030 EDSV-IQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDF 1088
Query: 219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRF 278
+G + C S + + F + D ++ F + KGH+G V C F
Sbjct: 1089 TCHQGTVLSCAISSDATK------FSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF 1142
Query: 279 SPGGESYASGSEDGTIRIWQTN 300
S G A+G ++G IRIW +
Sbjct: 1143 SLDGILLATGDDNGEIRIWNVS 1164
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 99/254 (38%), Gaps = 20/254 (7%)
Query: 59 GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL 118
GHK AV A+ S S D ++W+ TGD H+ V+ +D+ LL
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSR-LL 1066
Query: 119 TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG 178
+ F+ ++++++ R+ G++ + A + SD T SS + ++W
Sbjct: 1067 SWSFDGTVKVWNV-ITGRIERDFTCHQGTVLSCA-ISSDATKFSSTSADKTAKIWSFDLL 1124
Query: 179 KIVQTLETKS-PVTSAEVSRDGRYITTADGS-SVKFWDANHFGLVKGYNMPCNTESAS-- 234
+ L+ + V + S DG + T D + ++ W+ + L+ P + E +
Sbjct: 1125 SPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSC-APISVEEGTAT 1183
Query: 235 ---------LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESY 285
P + AGG W +V + + N + +H SP +Y
Sbjct: 1184 HGGWVTDVCFSPDSKTLVSAGGYLKWWNVATGDSSQTFYTNGTNLKKIH---VSPDFRTY 1240
Query: 286 ASGSEDGTIRIWQT 299
+ G + I Q
Sbjct: 1241 VTVDNLGILYILQV 1254
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 141/305 (46%), Gaps = 27/305 (8%)
Query: 17 RPVVD-LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF 75
RP D ++++ + DG + S D + + ETG+ + + H+ V C + F
Sbjct: 618 RPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRF 677
Query: 76 SASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTH--LLLTGGFEKILRIFDLN 132
A+ S D K+W+++TG+ H++ EH V C F+ +H LL TG + L+++DLN
Sbjct: 678 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 737
Query: 133 RPDAPPREVG--NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-- 188
+ + G NS R D +L+SC+ G ++LWDA S +++ K
Sbjct: 738 QKECRNTMFGHTNSVNHCR----FSPDDKLLASCSADGTLKLWDATSANERKSINVKQFF 793
Query: 189 -----PVTSAEV-------SRDGRYITTADGSSVKFWDANHFGLVKGYNM--PCNTESAS 234
P EV S DG I A + + +D + GL+ + +
Sbjct: 794 LNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCD 853
Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
P+ ++ + V +++ + ++ +GH VH V FSP G S+ + S+D TI
Sbjct: 854 FSPQ-NHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTI 912
Query: 295 RIWQT 299
R+W+T
Sbjct: 913 RLWET 917
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 12/188 (6%)
Query: 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93
L+S S D + + N TG+ F H+G V SC + +A +S SAD TAK+W
Sbjct: 1064 LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLL 1123
Query: 94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD-----APPREVGNSS-- 145
H H VR AFS D+ LL TG +RI++++ + AP E G ++
Sbjct: 1124 LPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHG 1183
Query: 146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT 204
G + + + + ++S+ G ++ W+ +G+ QT T + + VS D + T
Sbjct: 1184 GWVTDLCFSPDGKMLISA---GGYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVT 1240
Query: 205 ADGSSVKF 212
D + +
Sbjct: 1241 VDNLGILY 1248
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 161 LSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHF 218
++SC ++++ A +G K+++ + V S D R+I T VK W++
Sbjct: 636 IASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTG 695
Query: 219 GLVKGYNM------PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGP 272
LV Y+ C+ ++S L G D ++ ++D + E GH
Sbjct: 696 ELVHTYDEHSEQVNCCHFTNSSHHLLLA----TGSSDCFLKLWDLNQKECRNTMFGHTNS 751
Query: 273 VHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEEN 307
V+ RFSP + AS S DGT+++W N ++
Sbjct: 752 VNHCRFSPDDKLLASCSADGTLKLWDATSANERKS 786
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 14/159 (8%)
Query: 156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDA 215
+D+ L S +D +++W+ + K + + V + ++ R ++ + +VK W+
Sbjct: 1019 ADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNI 1078
Query: 216 ------NHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGH 269
F +G + C+ + + F + D ++ F + +GH
Sbjct: 1079 ITGNKEKDFVCHQGTVLSCDISHDATK------FSSTSADKTAKIWSFDLLLPLHELRGH 1132
Query: 270 HGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENH 308
+G V C FS A+G ++G IRIW N N E H
Sbjct: 1133 NGCVRCSAFSVDSTLLATGDDNGEIRIW--NVSNGELLH 1169
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 141/298 (47%), Gaps = 30/298 (10%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GHS V + +SP DG + SAS D + L N G + T GH +VW +
Sbjct: 137 GHSSSVWGVAFSP---DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 192
Query: 74 LFSASGSADFTAKLWD-------ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKIL 126
AS S D T KLW+ LTG H VR AFS D + + +K +
Sbjct: 193 QTIASASDDKTVKLWNRNGQLLQTLTG-------HSSSVRGVAFSPDGQTIASASDDKTV 245
Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
+++ NR + + S S+ VA+ QTI +S +D V+LW+ R+G+++QTL
Sbjct: 246 KLW--NRNGQLLQTLTGHSSSVNGVAFRPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTG 301
Query: 187 -KSPVTSAEVSRDGRYITTA-DGSSVKFWDAN--HFGLVKGYNMPCNTESASLEPKLGNI 242
S V S DG+ I +A D +VK W+ N H + G++ + + P G
Sbjct: 302 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHS--SSVWGVAFSPD-GQT 358
Query: 243 FIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
+ +D V +++ G+ + GH V V FSP G++ AS S+D T+++W N
Sbjct: 359 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 136/293 (46%), Gaps = 26/293 (8%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GHS V + +SP DG + SAS D + L N G + T GH +VW +
Sbjct: 301 GHSSSVWGVAFSP---DGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDG 356
Query: 74 LFSASGSADFTAKLWD-------ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKIL 126
AS S D T KLW+ LTG H VR AFS D + + +K +
Sbjct: 357 QTIASASDDKTVKLWNRNGQLLQTLTG-------HSSSVRGVAFSPDGQTIASASDDKTV 409
Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
+++ NR + + S S+ VA+ DQTI +S +D V+LW+ R+G+++QTL
Sbjct: 410 KLW--NRNGQLLQTLTGHSSSVWGVAFSPDDQTI-ASASDDKTVKLWN-RNGQLLQTLTG 465
Query: 187 -KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFI 244
S V S DG+ I +A D +VK W+ N L + + P G
Sbjct: 466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD-GQTIA 524
Query: 245 AGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
+ +D V +++ G+ + GH V V FSP G++ AS S D T+++W
Sbjct: 525 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 137/296 (46%), Gaps = 26/296 (8%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GHS V + +SP DG + SAS D + L N G + T GH +VW +
Sbjct: 96 GHSSSVRGVAFSP---DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 151
Query: 74 LFSASGSADFTAKLWD-------ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKIL 126
AS S D T KLW+ LTG H V AFS D + + +K +
Sbjct: 152 QTIASASDDKTVKLWNRNGQLLQTLTG-------HSSSVWGVAFSPDGQTIASASDDKTV 204
Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
+++ NR + + S S+R VA+ QTI +S +D V+LW+ R+G+++QTL
Sbjct: 205 KLW--NRNGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTG 260
Query: 187 KSPVTSAEVSR-DGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFI 244
S + R DG+ I +A D +VK W+ N L + + P G
Sbjct: 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPD-GQTIA 319
Query: 245 AGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
+ +D V +++ G+ + GH V V FSP G++ AS S+D T+++W N
Sbjct: 320 SASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 374
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/298 (29%), Positives = 136/298 (45%), Gaps = 26/298 (8%)
Query: 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA 71
HS V + +SP DG + SAS D + L N G + T GH +VW
Sbjct: 12 LEAHSSSVRGVAFSP---DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 67
Query: 72 NALFSASGSADFTAKLWD-------ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK 124
+ AS S D T KLW+ LTG H VR AFS D + + +K
Sbjct: 68 DGQTIASASDDKTVKLWNRNGQLLQTLTG-------HSSSVRGVAFSPDGQTIASASDDK 120
Query: 125 ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL 184
++++ NR + + S S+ VA+ QTI +S +D V+LW+ R+G+++QTL
Sbjct: 121 TVKLW--NRNGQLLQTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTL 176
Query: 185 ET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNI 242
S V S DG+ I +A D +VK W+ N L + + P G
Sbjct: 177 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD-GQT 235
Query: 243 FIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
+ +D V +++ G+ + GH V+ V F P G++ AS S+D T+++W N
Sbjct: 236 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN 292
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 133/289 (46%), Gaps = 12/289 (4%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GHS V + + P DG + SAS D + L N G + T GH +VW +
Sbjct: 260 GHSSSVNGVAFRP---DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 315
Query: 74 LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR 133
AS S D T KLW+ + H V AFS D + + +K ++++ NR
Sbjct: 316 QTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--NR 373
Query: 134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTS 192
+ + S S+R VA+ QTI +S +D V+LW+ R+G+++QTL S V
Sbjct: 374 NGQLLQTLTGHSSSVRGVAFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTGHSSSVWG 431
Query: 193 AEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMW 251
S D + I +A D +VK W+ N L + + P G + +D
Sbjct: 432 VAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPD-GQTIASASDDKT 490
Query: 252 VHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
V +++ G+ + GH V V FSP G++ AS S+D T+++W N
Sbjct: 491 VKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 135/296 (45%), Gaps = 26/296 (8%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GHS V + +SP DG + SAS D + L N G + T GH +V +
Sbjct: 219 GHSSSVRGVAFSP---DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDG 274
Query: 74 LFSASGSADFTAKLWD-------ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKIL 126
AS S D T KLW+ LTG H V AFS D + + +K +
Sbjct: 275 QTIASASDDKTVKLWNRNGQLLQTLTG-------HSSSVWGVAFSPDGQTIASASDDKTV 327
Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
+++ NR + + S S+ VA+ QTI +S +D V+LW+ R+G+++QTL
Sbjct: 328 KLW--NRNGQHLQTLTGHSSSVWGVAFSPDGQTI-ASASDDKTVKLWN-RNGQLLQTLTG 383
Query: 187 -KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFI 244
S V S DG+ I +A D +VK W+ N L + + P I
Sbjct: 384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIAS 443
Query: 245 AGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
A +D V +++ G+ + GH V V FSP G++ AS S+D T+++W N
Sbjct: 444 AS-DDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 497
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GHS V + +SP DG + SAS D + L N G + T GH +VW +
Sbjct: 506 GHSSSVRGVAFSP---DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDG 561
Query: 74 LFSASGSADFTAKLWD 89
AS S+D T KLW+
Sbjct: 562 QTIASASSDKTVKLWN 577
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 34 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 90
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 91 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 146
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 147 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 204
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 205 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 264
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
A+ G ++G ED V++++ T E + +GH V P AS +
Sbjct: 265 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 324
Query: 290 EDGTIRIWQTN 300
D TI++W+++
Sbjct: 325 NDKTIKLWKSD 335
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 11/221 (4%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160
H V + FS + L + +K+++I+ G+ G I VAW SD +
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAW-SSDSNL 103
Query: 161 LSSCTDSGGVRLWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTAD-GSSVKFWDANHF 218
L S +D +++WD SGK ++TL+ S V + I + SV+ WD
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 163
Query: 219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK----GHHGPVH 274
+K + SA + G++ ++ D ++D +G+ C K + PV
Sbjct: 164 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLIDDDNPPVS 220
Query: 275 CVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQ 315
V+FSP G+ + + D T+++W + + ++G N +
Sbjct: 221 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 261
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
V+S + S +G ++ ++ +K W D + G+ + + + S + N+ ++
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 106
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
+D + ++D +G+ + KGH V C F+P SGS D ++RIW
Sbjct: 107 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 158
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
+ +TGK + + + H N++G
Sbjct: 159 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 185
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG--------TGNAQTGKL 319
GH V V+FSP GE AS S D I+IW E+ SG ++ + L
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 104
Query: 320 KASTDEVTRKI 330
+++D+ T KI
Sbjct: 105 VSASDDKTLKI 115
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 97.4 bits (241), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 32 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 88
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 89 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 144
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 145 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 202
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 262
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
A+ G ++G ED V++++ T E + +GH V P AS +
Sbjct: 263 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 322
Query: 290 EDGTIRIWQTN 300
D TI++W+++
Sbjct: 323 NDKTIKLWKSD 333
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 11/221 (4%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160
H V + FS + L + +K+++I+ G+ G I VAW SD +
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAW-SSDSNL 101
Query: 161 LSSCTDSGGVRLWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTAD-GSSVKFWDANHF 218
L S +D +++WD SGK ++TL+ S V + I + SV+ WD
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK----GHHGPVH 274
+K + SA + G++ ++ D ++D +G+ C K + PV
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLIDDDNPPVS 218
Query: 275 CVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQ 315
V+FSP G+ + + D T+++W + + ++G N +
Sbjct: 219 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 259
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
V+S + S +G ++ ++ +K W D + G+ + + + S + N+ ++
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 104
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
+D + ++D +G+ + KGH V C F+P SGS D ++RIW
Sbjct: 105 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 156
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
+ +TGK + + + H N++G
Sbjct: 157 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 183
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 22/43 (51%)
Query: 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG 310
GH V V+FSP GE AS S D I+IW E+ SG
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG 85
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 27 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 83
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 84 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 139
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 140 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 197
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 198 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 257
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
A+ G ++G ED V++++ T E + +GH V P AS +
Sbjct: 258 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 317
Query: 290 EDGTIRIWQTN 300
D TI++W+++
Sbjct: 318 NDKTIKLWKSD 328
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
T GH AV S N + AS SAD K+W A G EK HK + A+S D+
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+LL++ +K L+I+D++ G+S+ + + I+S D VR+WD
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 152
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
++GK ++TL S PV++ +RDG I ++ + + WD
Sbjct: 153 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 195
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
A G+ + + D + PV V+FSP G+ + + D
Sbjct: 196 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 231
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
T+++W + + ++G N +
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEK 254
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
V+S + S +G ++ ++ +K W D + G+ + + + S + N+ ++
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 99
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
+D + ++D +G+ + KGH V C F+P SGS D ++RIW
Sbjct: 100 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 151
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
+ +TGK + + + H N++G
Sbjct: 152 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 178
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG--------TGNAQTGKL 319
GH V V+FSP GE AS S D I+IW E+ SG ++ + L
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 97
Query: 320 KASTDEVTRKI 330
+++D+ T KI
Sbjct: 98 VSASDDKTLKI 108
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 11 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 67
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 68 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 123
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 124 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 181
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 182 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 241
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
A+ G ++G ED V++++ T E + +GH V P AS +
Sbjct: 242 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 301
Query: 290 EDGTIRIWQTN 300
D TI++W+++
Sbjct: 302 NDKTIKLWKSD 312
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
T GH AV S N + AS SAD K+W A G EK HK + A+S D+
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+LL++ +K L+I+D++ G+S+ + + I+S D VR+WD
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 136
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
++GK ++TL S PV++ +RDG I ++ + + WD
Sbjct: 137 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 179
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
A G+ + + D + PV V+FSP G+ + + D
Sbjct: 180 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 215
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
T+++W + + ++G N +
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEK 238
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
V+S + S +G ++ ++ +K W D + G+ + + + S + N+ ++
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 83
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
+D + ++D +G+ + KGH V C F+P SGS D ++RIW
Sbjct: 84 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 135
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
+ +TGK + + + H N++G
Sbjct: 136 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 162
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG--------TGNAQTGKL 319
GH V V+FSP GE AS S D I+IW E+ SG ++ + L
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 81
Query: 320 KASTDEVTRKI 330
+++D+ T KI
Sbjct: 82 VSASDDKTLKI 92
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 66
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 67 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 123 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 180
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
A+ G ++G ED V++++ T E + +GH V P AS +
Sbjct: 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 300
Query: 290 EDGTIRIWQTN 300
D TI++W+++
Sbjct: 301 NDKTIKLWKSD 311
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
T GH AV S N + AS SAD K+W A G EK HK + A+S D+
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+LL++ +K L+I+D++ G+S+ + + I+S D VR+WD
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 135
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
++GK ++TL S PV++ +RDG I ++ + + WD
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 178
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
A G+ + + D + PV V+FSP G+ + + D
Sbjct: 179 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 214
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
T+++W + + ++G N +
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEK 237
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
V+S + S +G ++ ++ +K W D + G+ + + + S + N+ ++
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 82
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
+D + ++D +G+ + KGH V C F+P SGS D ++RIW
Sbjct: 83 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 134
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
+ +TGK + + + H N++G
Sbjct: 135 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 161
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG--------TGNAQTGKL 319
GH V V+FSP GE AS S D I+IW E+ SG ++ + L
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 320 KASTDEVTRKI 330
+++D+ T KI
Sbjct: 81 VSASDDKTLKI 91
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 15 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 71
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 72 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 127
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 128 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 185
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 186 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 245
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
A+ G ++G ED V++++ T E + +GH V P AS +
Sbjct: 246 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 305
Query: 290 EDGTIRIWQTN 300
D TI++W+++
Sbjct: 306 NDKTIKLWKSD 316
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
T GH AV S N + AS SAD K+W A G EK HK + A+S D+
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+LL++ +K L+I+D++ G+S+ + + I+S D VR+WD
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 140
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
++GK ++TL S PV++ +RDG I ++ + + WD
Sbjct: 141 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 183
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
A G+ + + D + PV V+FSP G+ + + D
Sbjct: 184 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 219
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
T+++W + + ++G N +
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEK 242
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
V+S + S +G ++ ++ +K W D + G+ + + + S + N+ ++
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 87
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
+D + ++D +G+ + KGH V C F+P SGS D ++RIW
Sbjct: 88 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 139
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
+ +TGK + + + H N++G
Sbjct: 140 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 166
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG--------TGNAQTGKL 319
GH V V+FSP GE AS S D I+IW E+ SG ++ + L
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 85
Query: 320 KASTDEVTRKI 330
+++D+ T KI
Sbjct: 86 VSASDDKTLKI 96
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 66
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 67 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 122
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 123 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 180
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 181 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 240
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
A+ G ++G ED V++++ T E + +GH V P AS +
Sbjct: 241 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 300
Query: 290 EDGTIRIWQTN 300
D TI++W+++
Sbjct: 301 NDKTIKLWKSD 311
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
T GH AV S N + AS SAD K+W A G EK HK + A+S D+
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+LL++ +K L+I+D++ G+S+ + + I+S D VR+WD
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 135
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
++GK ++TL S PV++ +RDG I ++ + + WD
Sbjct: 136 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 178
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
A G+ + + D + PV V+FSP G+ + + D
Sbjct: 179 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 214
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
T+++W + + ++G N +
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEK 237
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
V+S + S +G ++ ++ +K W D + G+ + + + S + N+ ++
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 82
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
+D + ++D +G+ + KGH V C F+P SGS D ++RIW
Sbjct: 83 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 134
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
+ +TGK + + + H N++G
Sbjct: 135 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 161
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG--------TGNAQTGKL 319
GH V V+FSP GE AS S D I+IW E+ SG ++ + L
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 80
Query: 320 KASTDEVTRKI 330
+++D+ T KI
Sbjct: 81 VSASDDKTLKI 91
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 73 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 129 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 186
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
A+ G ++G ED V++++ T E + +GH V P AS +
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 290 EDGTIRIWQTN 300
D TI++W+++
Sbjct: 307 NDKTIKLWKSD 317
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
T GH AV S N + AS SAD K+W A G EK HK + A+S D+
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+LL++ +K L+I+D++ G+S+ + + I+S D VR+WD
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 141
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
++GK ++TL S PV++ +RDG I ++ + + WD
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 184
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
A G+ + + D + PV V+FSP G+ + + D
Sbjct: 185 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 220
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
T+++W + + ++G N +
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEK 243
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
V+S + S +G ++ ++ +K W D + G+ + + + S + N+ ++
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 88
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
+D + ++D +G+ + KGH V C F+P SGS D ++RIW
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 140
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
+ +TGK + + + H N++G
Sbjct: 141 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 167
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG--------TGNAQTGKL 319
GH V V+FSP GE AS S D I+IW E+ SG ++ + L
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 320 KASTDEVTRKI 330
+++D+ T KI
Sbjct: 87 VSASDDKTLKI 97
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 9 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 65
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 66 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 121
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 122 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 179
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 180 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 239
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
A+ G ++G ED V++++ T E + +GH V P AS +
Sbjct: 240 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 299
Query: 290 EDGTIRIWQTN 300
D TI++W+++
Sbjct: 300 NDKTIKLWKSD 310
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
T GH AV S N + AS SAD K+W A G EK HK + A+S D+
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+LL++ +K L+I+D++ G+S+ + + I+S D VR+WD
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 134
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
++GK ++TL S PV++ +RDG I ++ + + WD
Sbjct: 135 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 177
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
A G+ + + D + PV V+FSP G+ + + D
Sbjct: 178 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 213
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
T+++W + + ++G N +
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEK 236
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
V+S + S +G ++ ++ +K W D + G+ + + + S + N+ ++
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 81
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
+D + ++D +G+ + KGH V C F+P SGS D ++RIW
Sbjct: 82 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 133
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
+ +TGK + + + H N++G
Sbjct: 134 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 160
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG--------TGNAQTGKL 319
GH V V+FSP GE AS S D I+IW E+ SG ++ + L
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 79
Query: 320 KASTDEVTRKI 330
+++D+ T KI
Sbjct: 80 VSASDDKTLKI 90
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 73 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 129 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 186
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
A+ G ++G ED V++++ T E + +GH V P AS +
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 290 EDGTIRIWQTN 300
D TI++W+++
Sbjct: 307 NDKTIKLWKSD 317
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
T GH AV S N + AS SAD K+W A G EK HK + A+S D+
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+LL++ +K L+I+D++ G+S+ + + I+S D VR+WD
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 141
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
++GK ++TL S PV++ +RDG I ++ + + WD
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 184
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
A G+ + + D + PV V+FSP G+ + + D
Sbjct: 185 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 220
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
T+++W + + ++G N +
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEK 243
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
V+S + S +G ++ ++ +K W D + G+ + + + S + N+ ++
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 88
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
+D + ++D +G+ + KGH V C F+P SGS D ++RIW
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 140
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
+ +TGK + + + H N++G
Sbjct: 141 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 167
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG--------TGNAQTGKL 319
GH V V+FSP GE AS S D I+IW E+ SG ++ + L
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 320 KASTDEVTRKI 330
+++D+ T KI
Sbjct: 87 VSASDDKTLKI 97
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 6 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 62
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 63 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 118
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 119 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 176
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 177 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 236
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
A+ G ++G ED V++++ T E + +GH V P AS +
Sbjct: 237 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 296
Query: 290 EDGTIRIWQTN 300
D TI++W+++
Sbjct: 297 NDKTIKLWKSD 307
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
T GH AV S N + AS SAD K+W A G EK HK + A+S D+
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+LL++ +K L+I+D++ G+S+ + + I+S D VR+WD
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 131
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
++GK ++TL S PV++ +RDG I ++ + + WD
Sbjct: 132 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 174
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
A G+ + + D + PV V+FSP G+ + + D
Sbjct: 175 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 210
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
T+++W + + ++G N +
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEK 233
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
V+S + S +G ++ ++ +K W D + G+ + + + S + N+ ++
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 78
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
+D + ++D +G+ + KGH V C F+P SGS D ++RIW
Sbjct: 79 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 130
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
+ +TGK + + + H N++G
Sbjct: 131 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 157
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG--------TGNAQTGKL 319
GH V V+FSP GE AS S D I+IW E+ SG ++ + L
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 76
Query: 320 KASTDEVTRKI 330
+++D+ T KI
Sbjct: 77 VSASDDKTLKI 87
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 72
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 73 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 128
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 129 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 186
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 187 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 246
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
A+ G ++G ED V++++ T E + +GH V P AS +
Sbjct: 247 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 306
Query: 290 EDGTIRIWQTN 300
D TI++W+++
Sbjct: 307 NDKTIKLWKSD 317
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
T GH AV S N + AS SAD K+W A G EK HK + A+S D+
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+LL++ +K L+I+D++ G+S+ + + I+S D VR+WD
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 141
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
++GK ++TL S PV++ +RDG I ++ + + WD
Sbjct: 142 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 184
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
A G+ + + D + PV V+FSP G+ + + D
Sbjct: 185 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 220
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
T+++W + + ++G N +
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEK 243
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
V+S + S +G ++ ++ +K W D + G+ + + + S + N+ ++
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 88
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
+D + ++D +G+ + KGH V C F+P SGS D ++RIW
Sbjct: 89 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 140
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
+ +TGK + + + H N++G
Sbjct: 141 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 167
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG--------TGNAQTGKL 319
GH V V+FSP GE AS S D I+IW E+ SG ++ + L
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 86
Query: 320 KASTDEVTRKI 330
+++D+ T KI
Sbjct: 87 VSASDDKTLKI 97
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 70 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 126 VSGSFDESVRIWDV-KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
A+ G ++G ED V++++ T E + +GH V P AS +
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 290 EDGTIRIWQTN 300
D TI++W+++
Sbjct: 304 NDKTIKLWKSD 314
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 11/221 (4%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160
H V + FS + L + +K+++I+ G+ G I VAW SD +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAW-SSDSNL 82
Query: 161 LSSCTDSGGVRLWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTAD-GSSVKFWDANHF 218
L S +D +++WD SGK ++TL+ S V + I + SV+ WD
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK----GHHGPVH 274
+K + SA + G++ ++ D ++D +G+ C K + PV
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ---CLKTLIDDDNPPVS 199
Query: 275 CVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQ 315
V+FSP G+ + + D T+++W + + ++G N +
Sbjct: 200 FVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEK 240
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG--------TGNAQTGKL 319
GH V V+FSP GE AS S D I+IW E+ SG ++ + L
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 320 KASTDEVTRKI 330
+++D+ T KI
Sbjct: 84 VSASDDKTLKI 94
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 145/321 (45%), Gaps = 47/321 (14%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GH RP+ + Y+ +G L S SKDSS + G+ +GT +GH G +WS +D
Sbjct: 30 GHERPLTQVKYNK---EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT 86
Query: 74 LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILR------ 127
+ +GSAD++ KLWD G +++ V+ FS + L + +++
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFL-AILDNVMKNPGSIN 145
Query: 128 IFDLNRPDA----------PPREVGNSSG-SIRTVA-WLHSDQTILSSCTDSGGVRLWDA 175
I+++ R A P ++ G TVA W + I++ D G + +D
Sbjct: 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKD-GKISKYDV 204
Query: 176 RSG-KIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFW-DANHFGLVKGYNMPCNTES 232
+ + V +++ + ++ + S D Y T+ + F D + ++K Y C +
Sbjct: 205 SNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNT 264
Query: 233 ASLEPKLGNIFIAGGED-----------------MWVHVFDFHTGEQIGCNKGHHGPVHC 275
A + P I + GG++ + +F+ E+IG +GH GP++
Sbjct: 265 AVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE----EEIGRVQGHFGPLNT 320
Query: 276 VRFSPGGESYASGSEDGTIRI 296
V SP G SYASG EDG IR+
Sbjct: 321 VAISPQGTSYASGGEDGFIRL 341
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 149/311 (47%), Gaps = 22/311 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 70 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 126 VSGSFDESVRIWDV-KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A + +K WD + +K Y N +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
A+ G ++G ED V++++ T E + +GH V P AS +
Sbjct: 244 FANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 290 EDGTIRIWQTN 300
D TI++W+++
Sbjct: 304 NDKTIKLWKSD 314
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 95/218 (43%), Gaps = 5/218 (2%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160
H V + FS + L + +K+++I+ G+ G I VAW SD +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG-ISDVAW-SSDSNL 82
Query: 161 LSSCTDSGGVRLWDARSGKIVQTLETKSP-VTSAEVSRDGRYITTAD-GSSVKFWDANHF 218
L S +D +++WD SGK ++TL+ S V + I + SV+ WD
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
Query: 219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG-CNKGHHGPVHCVR 277
+K + SA + G++ ++ D ++D +G+ + + PV V+
Sbjct: 143 MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK 202
Query: 278 FSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQ 315
FSP G+ + + D +++W + + ++G N +
Sbjct: 203 FSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEK 240
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG--------TGNAQTGKL 319
GH V V+FSP GE AS S D I+IW E+ SG ++ + L
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 320 KASTDEVTRKI 330
+++D+ T KI
Sbjct: 84 VSASDDKTLKI 94
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L ++S D + G + T GHK
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLAASSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 70 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 126 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
A+ G ++G ED V++++ T E + +GH V P AS +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 290 EDGTIRIWQTN 300
D TI++W+++
Sbjct: 304 NDKTIKLWKSD 314
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/263 (24%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
T GH AV S N + A+ SAD K+W A G EK HK + A+S D+
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+LL++ +K L+I+D++ G+S+ + + I+S D VR+WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 138
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
++GK ++TL S PV++ +RDG I ++ + + WD
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 181
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
A G+ + + D + PV V+FSP G+ + + D
Sbjct: 182 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 217
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
T+++W + + ++G N +
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEK 240
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
V+S + S +G ++ + +K W D + G+ + + + S + N+ ++
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 85
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
+D + ++D +G+ + KGH V C F+P SGS D ++RIW
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 137
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
+ +TGK + + + H N++G
Sbjct: 138 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 164
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG--------TGNAQTGKL 319
GH V V+FSP GE A+ S D I+IW E+ SG ++ + L
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 320 KASTDEVTRKI 330
+++D+ T KI
Sbjct: 84 VSASDDKTLKI 94
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 70 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 126 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
A+ G ++G ED V++++ T E + +GH V P AS +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 290 EDGTIRIWQTN 300
D TI++++++
Sbjct: 304 NDKTIKLYKSD 314
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
T GH AV S N + AS SAD K+W A G EK HK + A+S D+
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+LL++ +K L+I+D++ G+S+ + + I+S D VR+WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 138
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
++GK ++TL S PV++ +RDG I ++ + + WD
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 181
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
A G+ + + D + PV V+FSP G+ + + D
Sbjct: 182 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 217
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
T+++W + + ++G N +
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEK 240
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
V+S + S +G ++ ++ +K W D + G+ + + + S + N+ ++
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 85
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
+D + ++D +G+ + KGH V C F+P SGS D ++RIW
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 137
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
+ +TGK + + + H N++G
Sbjct: 138 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 164
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG--------TGNAQTGKL 319
GH V V+FSP GE AS S D I+IW E+ SG ++ + L
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 320 KASTDEVTRKI 330
+++D+ T KI
Sbjct: 84 VSASDDKTLKI 94
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/311 (27%), Positives = 150/311 (48%), Gaps = 22/311 (7%)
Query: 3 KRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKG 62
K A+ GH++ V + +SP +G +L S+S D + G + T GHK
Sbjct: 13 KPNYALKFTLAGHTKAVSSVKFSP---NGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 63 AV----WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLL 117
+ WS D+N L SAS D T K+WD +G + + H + V C F+ ++L+
Sbjct: 70 GISDVAWSS--DSNLLVSASD--DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 125
Query: 118 LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177
++G F++ +RI+D+ + + + S + V + I+SS D G R+WD S
Sbjct: 126 VSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD-GLCRIWDTAS 183
Query: 178 GKIVQTL--ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTES-- 232
G+ ++TL + PV+ + S +G+YI A +++K WD + +K Y N +
Sbjct: 184 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI 243
Query: 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-- 289
A+ G ++G ED V++++ T E + +GH V P AS +
Sbjct: 244 FANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 303
Query: 290 EDGTIRIWQTN 300
D TI++++++
Sbjct: 304 NDKTIKLFKSD 314
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 112/263 (42%), Gaps = 46/263 (17%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDT 114
T GH AV S N + AS SAD K+W A G EK HK + A+S D+
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+LL++ +K L+I+D++ G+S+ + + I+S D VR+WD
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSN-YVFCCNFNPQSNLIVSGSFDES-VRIWD 138
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
++GK ++TL S PV++ +RDG I ++ + + WD
Sbjct: 139 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT----------------- 181
Query: 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292
A G+ + + D + PV V+FSP G+ + + D
Sbjct: 182 ------------ASGQCLKTLIDD------------DNPPVSFVKFSPNGKYILAATLDN 217
Query: 293 TIRIWQTNPPNHEENHSGTGNAQ 315
T+++W + + ++G N +
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEK 240
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 67/154 (43%), Gaps = 22/154 (14%)
Query: 190 VTSAEVSRDGRYITTADGSS-VKFW---DANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
V+S + S +G ++ ++ +K W D + G+ + + + S + N+ ++
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSD---SNLLVS 85
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
+D + ++D +G+ + KGH V C F+P SGS D ++RIW
Sbjct: 86 ASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW-------- 137
Query: 306 ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEG 339
+ +TGK + + + H N++G
Sbjct: 138 -------DVKTGKCLKTLPAHSDPVSAVHFNRDG 164
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG--------TGNAQTGKL 319
GH V V+FSP GE AS S D I+IW E+ SG ++ + L
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 320 KASTDEVTRKI 330
+++D+ T KI
Sbjct: 84 VSASDDKTLKI 94
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/297 (25%), Positives = 143/297 (48%), Gaps = 28/297 (9%)
Query: 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC 68
P V GH V+ + + G +VS S D++ + + TG + T GH G VWS
Sbjct: 111 PKVLKGHDDHVI----TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 166
Query: 69 LDANALFSASGSADFTAKLWDALTGDEKHS-FEHKHIVRACAFSEDTHLLLTGGFEKILR 127
+ N + SGS D T K+W+A TG+ H+ + H VR E +++G + LR
Sbjct: 167 MRDNIII--SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLR 222
Query: 128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
++D+ +G+ + ++R V + + ++S D V++WD + + TL+
Sbjct: 223 VWDIETGQCLHVLMGHVA-AVRCVQ--YDGRRVVSGAYDF-MVKVWDPETETCLHTLQGH 278
Query: 188 SPVTSAEVSRDGRYITTAD-GSSVKFWDA---NHFGLVKGYNMPCNTESASLEPKLGNIF 243
+ + + DG ++ + +S++ WD N + G+ + ++ +E K NI
Sbjct: 279 TNRVYS-LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH----QSLTSGMELK-DNIL 332
Query: 244 IAGGEDMWVHVFDFHTGEQIGCNKG---HHGPVHCVRFSPGGESYASGSEDGTIRIW 297
++G D V ++D TG+ + +G H V C++F+ + S+DGT+++W
Sbjct: 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLW 387
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 130/286 (45%), Gaps = 28/286 (9%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GH PV + + P+ +VSAS+D++ + + ETGD+ T +GH +V D +
Sbjct: 106 GHRSPVTRVIFHPVFS---VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 74 LFSASGSADFTAKLWDALTGDE--KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131
AS SAD T KLWD G E + H H V + + + +++ +K ++++++
Sbjct: 163 KLLASCSADMTIKLWD-FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
Query: 132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVT 191
G+ +R V + D T+++SC++ VR+W +V T E K+ +
Sbjct: 222 QTGYCVKTFTGHREW-VRMVR-PNQDGTLIASCSNDQTVRVW------VVATKECKAEL- 272
Query: 192 SAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMW 251
R+ R++ + + + + + +S K G ++G D
Sbjct: 273 -----REHRHVVEC----ISWAPESSYSSISEATGSETKKSG----KPGPFLLSGSRDKT 319
Query: 252 VHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
+ ++D TG + GH V V F GG+ S ++D T+R+W
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 104/227 (45%), Gaps = 28/227 (12%)
Query: 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN 72
HGH V + I P+G +VSAS+D + + +TG + TF GH+ V + +
Sbjct: 189 HGHDHNVSSV---SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD 245
Query: 73 ALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTH---------------- 115
AS S D T ++W T + K EH+H+V +++ ++
Sbjct: 246 GTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305
Query: 116 ----LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
LL+G +K ++++D++ VG+ + +R V HS + SC D +R
Sbjct: 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-VRGVL-FHSGGKFILSCADDKTLR 363
Query: 172 LWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTAD-GSSVKFWDAN 216
+WD ++ + ++TL + VTS + + Y+ T +VK W+
Sbjct: 364 VWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/229 (20%), Positives = 97/229 (42%), Gaps = 25/229 (10%)
Query: 95 EKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW 153
EK++ H+ V F ++++ + ++++D D R + + S++ +++
Sbjct: 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-RTLKGHTDSVQDISF 158
Query: 154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYITTAD-GSSVK 211
HS + +L+SC+ ++LWD + + ++T+ V+S + +G +I +A ++K
Sbjct: 159 DHSGK-LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 217
Query: 212 FWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHG 271
W+ VK + + G + + D V V+ T E + H
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 272 PVHCVRFSP-----------GGES---------YASGSEDGTIRIWQTN 300
V C+ ++P G E+ SGS D TI++W +
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG-TGNAQ------TGKLK 320
GH PV V F P S SED TI++W + E G T + Q +GKL
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 321 AS-TDEVTRKIEGFH 334
AS + ++T K+ F
Sbjct: 166 ASCSADMTIKLWDFQ 180
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 116/264 (43%), Gaps = 20/264 (7%)
Query: 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN 72
GHS V D+ I+ DG F +S S D + L + TG F GH V S ++
Sbjct: 60 RGHSHFVSDVV---ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 73 ALFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDTH--LLLTGGFEKILR 127
SGS D T KLW+ L G K++ + H V FS ++ ++++ G++K+++
Sbjct: 117 NRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 175
Query: 128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
+++L +G+ +G + TV + D ++ +S G LWD GK + TL+
Sbjct: 176 VWNLANCKLKTNHIGH-TGYLNTVT-VSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 233
Query: 188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKL-------- 239
+ + S + ++ A G S+K WD +V + S+ EP
Sbjct: 234 DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 293
Query: 240 -GNIFIAGGEDMWVHVFDFHTGEQ 262
G AG D V V+ G +
Sbjct: 294 DGQTLFAGYTDNLVRVWQVTIGTR 317
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 16/201 (7%)
Query: 116 LLLTGGFEKILRIFDLNRPDA----PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
++L+ +K + ++ L R + P R + S + V Q LS D G +R
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD-GTLR 88
Query: 172 LWDARSGKIVQTL--ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN 229
LWD +G + TK ++ A S + + ++ + ++K W N G+ K Y +
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW--NTLGVCK-YTVQDE 145
Query: 230 TES-----ASLEPKLGN-IFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE 283
+ S P N I ++ G D V V++ + + GH G ++ V SP G
Sbjct: 146 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 205
Query: 284 SYASGSEDGTIRIWQTNPPNH 304
ASG +DG +W N H
Sbjct: 206 LCASGGKDGQAMLWDLNEGKH 226
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 71.6 bits (174), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 28/210 (13%)
Query: 122 FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV 181
+ K+ I +L P A G ++ + +AW H +I++ ++G +RLW+ ++G ++
Sbjct: 85 YWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGV-ENGELRLWN-KTGALL 142
Query: 182 QTLET-KSPVTSAEVSRDGRYITTADGSSVK-FWDA------NHFGLVKGYNMPCNTESA 233
L ++P+ S + ++DG +I + D +V W+ HF L + N E+
Sbjct: 143 NVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH 202
Query: 234 SLEPKLG--------NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESY 285
S + LG + F+ G + V+ G GHHGP+ + F+ +
Sbjct: 203 SGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLL 262
Query: 286 ASGSEDGTIRIWQTNPPNHEENHSGTGNAQ 315
S S+DGT+RIW H G GN+Q
Sbjct: 263 LSASDDGTLRIW----------HGGNGNSQ 282
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160
H + F++ LLL+ + LRI+ ++ G+S SI + +W+ D+ I
Sbjct: 246 HHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDDKVI 304
Query: 161 LSSCTDSGGVRLWDARSGKIVQ-TLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFG 219
SC+ G VRLW + ++ ++ P+ + +S+DG+ A F D G
Sbjct: 305 --SCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA------FMD----G 352
Query: 220 LVKGYNM-PCNTESASL 235
V Y++ N++S SL
Sbjct: 353 QVNVYDLKKLNSKSRSL 369
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/264 (26%), Positives = 116/264 (43%), Gaps = 20/264 (7%)
Query: 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN 72
GHS V D+ I+ DG F +S S D + L + TG F GH V S ++
Sbjct: 83 RGHSHFVSDVV---ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 73 ALFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDTH--LLLTGGFEKILR 127
SGS D T KLW+ L G K++ + H V FS ++ ++++ G++K+++
Sbjct: 140 NRQIVSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187
+++L +G+ +G + TV + D ++ +S G LWD GK + TL+
Sbjct: 199 VWNLANCKLKTNHIGH-TGYLNTVT-VSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG 256
Query: 188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKL-------- 239
+ + S + ++ A G S+K WD +V + S+ EP
Sbjct: 257 DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA 316
Query: 240 -GNIFIAGGEDMWVHVFDFHTGEQ 262
G AG D V V+ G +
Sbjct: 317 DGQTLFAGYTDNLVRVWQVTIGTR 340
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 16/201 (7%)
Query: 116 LLLTGGFEKILRIFDLNRPDA----PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171
++L+ +K + ++ L R + P R + S + V Q LS D G +R
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWD-GTLR 111
Query: 172 LWDARSGKIVQTL--ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN 229
LWD +G + TK ++ A S + + ++ + ++K W N G+ K Y +
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW--NTLGVCK-YTVQDE 168
Query: 230 TES-----ASLEPKLGN-IFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE 283
+ S P N I ++ G D V V++ + + GH G ++ V SP G
Sbjct: 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 228
Query: 284 SYASGSEDGTIRIWQTNPPNH 304
ASG +DG +W N H
Sbjct: 229 LCASGGKDGQAMLWDLNEGKH 249
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 130/309 (42%), Gaps = 46/309 (14%)
Query: 2 DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
D +K VP+ GHS V D +T DG + +SAS D + L + TG+ F GH
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61 KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
K V S +D A SGS D T K+W L H+ +V +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+++ G +K+++ ++LN+ +G++S +I T+ D T+++S G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS 234
+ K + TL + V S S + ++ A + +K + S
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF--------------------S 264
Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
L+P+ ++ D E G +K + +S G++ +G D I
Sbjct: 265 LDPQ--------------YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 295 RIWQTNPPN 303
R+WQ N
Sbjct: 311 RVWQVMTAN 319
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 116/267 (43%), Gaps = 30/267 (11%)
Query: 55 GTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDALTGDEK------HSFE-HKHI 104
GT EGH G V S A N L SA S D T W LTGD++ SF+ H HI
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSA--SRDKTLISWK-LTGDDQKFGVPVRSFKGHSHI 67
Query: 105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164
V+ C + D L+ ++K LR++D+ + R VG+ S + +V I+S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGS 126
Query: 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-------YITTADGSSVKFWDANH 217
D +++W + + L V+ V + + I+ + VK W+ N
Sbjct: 127 RDK-TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 218 FGL---VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVH 274
F + G+N NT +AS + G + + G+D + +++ ++ V
Sbjct: 186 FQIEADFIGHNSNINTLTASPD---GTLIASAGKDGEIMLWNL-AAKKAMYTLSAQDEVF 241
Query: 275 CVRFSPGGESYASGSEDGTIRIWQTNP 301
+ FSP A+ + G I+++ +P
Sbjct: 242 SLAFSPNRYWLAAATATG-IKVFSLDP 267
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 130/309 (42%), Gaps = 46/309 (14%)
Query: 2 DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
D +K VP+ GHS V D +T DG + +SAS D + L + TG+ F GH
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61 KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
K V S +D A SGS D T K+W L H+ +V +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+++ G +K+++ ++LN+ +G++S +I T+ D T+++S G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS 234
+ K + TL + V S S + ++ A + +K + S
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF--------------------S 264
Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
L+P+ ++ D E G +K + +S G++ +G D I
Sbjct: 265 LDPQ--------------YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 295 RIWQTNPPN 303
R+WQ N
Sbjct: 311 RVWQVMTAN 319
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 116/267 (43%), Gaps = 30/267 (11%)
Query: 55 GTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDALTGDEK------HSFE-HKHI 104
GT EGH G V S A N L SA S D T W LTGD++ SF+ H HI
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSA--SRDKTLISWK-LTGDDQKFGVPVRSFKGHSHI 67
Query: 105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164
V+ C + D L+ ++K LR++D+ + R VG+ S + +V I+S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGS 126
Query: 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-------YITTADGSSVKFWDANH 217
D +++W + + L V+ V + + I+ + VK W+ N
Sbjct: 127 RDK-TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 218 FGL---VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVH 274
F + G+N NT +AS + G + + G+D + +++ ++ V
Sbjct: 186 FQIEADFIGHNSNINTLTASPD---GTLIASAGKDGEIMLWNL-AAKKAMYTLSAQDEVF 241
Query: 275 CVRFSPGGESYASGSEDGTIRIWQTNP 301
+ FSP A+ + G I+++ +P
Sbjct: 242 SLAFSPNRYWLAAATATG-IKVFSLDP 267
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 130/309 (42%), Gaps = 46/309 (14%)
Query: 2 DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
D +K VP+ GHS V D +T DG + +SAS D + L + TG+ F GH
Sbjct: 44 DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 100
Query: 61 KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
K V S +D A SGS D T K+W L H+ +V +D+
Sbjct: 101 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 160
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+++ G +K+++ ++LN+ +G++S +I T+ D T+++S G + LW+
Sbjct: 161 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 218
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS 234
+ K + TL + V S S + ++ A + +K + S
Sbjct: 219 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF--------------------S 258
Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
L+P+ ++ D E G +K + +S G++ +G D I
Sbjct: 259 LDPQ--------------YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 304
Query: 295 RIWQTNPPN 303
R+WQ N
Sbjct: 305 RVWQVMTAN 313
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 116/267 (43%), Gaps = 30/267 (11%)
Query: 55 GTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDALTGDEK------HSFE-HKHI 104
GT EGH G V S A N L SA S D T W LTGD++ SF+ H HI
Sbjct: 5 GTLEGHNGWVTSLATSAGQPNLLLSA--SRDKTLISWK-LTGDDQKFGVPVRSFKGHSHI 61
Query: 105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164
V+ C + D L+ ++K LR++D+ + R VG+ S + +V I+S
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGS 120
Query: 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-------YITTADGSSVKFWDANH 217
D +++W + + L V+ V + + I+ + VK W+ N
Sbjct: 121 RDK-TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 179
Query: 218 FGL---VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVH 274
F + G+N NT +AS + G + + G+D + +++ ++ V
Sbjct: 180 FQIEADFIGHNSNINTLTASPD---GTLIASAGKDGEIMLWNL-AAKKAMYTLSAQDEVF 235
Query: 275 CVRFSPGGESYASGSEDGTIRIWQTNP 301
+ FSP A+ + G I+++ +P
Sbjct: 236 SLAFSPNRYWLAAATATG-IKVFSLDP 261
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 129/304 (42%), Gaps = 46/304 (15%)
Query: 2 DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
D +K VP+ GHS V D +T DG + +SAS D + L + TG+ F GH
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61 KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
K V S +D A SGS D T K+W L H+ +V +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+++ G +K+++ ++LN+ +G++S +I T+ D T+++S G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS 234
+ K + TL + V S S + ++ A + +K + S
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF--------------------S 264
Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
L+P+ ++ D E G +K + +S G++ +G D I
Sbjct: 265 LDPQ--------------YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 295 RIWQ 298
R+WQ
Sbjct: 311 RVWQ 314
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 116/267 (43%), Gaps = 30/267 (11%)
Query: 55 GTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDALTGDEK------HSFE-HKHI 104
GT EGH G V S A N L SA S D T W LTGD++ SF+ H HI
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSA--SRDKTLISWK-LTGDDQKFGVPVRSFKGHSHI 67
Query: 105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164
V+ C + D L+ ++K LR++D+ + R VG+ S + +V I+S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGS 126
Query: 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-------YITTADGSSVKFWDANH 217
D +++W + + L V+ V + + I+ + VK W+ N
Sbjct: 127 RDK-TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 218 FGL---VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVH 274
F + G+N NT +AS + G + + G+D + +++ ++ V
Sbjct: 186 FQIEADFIGHNSNINTLTASPD---GTLIASAGKDGEIMLWNL-AAKKAMYTLSAQDEVF 241
Query: 275 CVRFSPGGESYASGSEDGTIRIWQTNP 301
+ FSP A+ + G I+++ +P
Sbjct: 242 SLAFSPNRYWLAAATATG-IKVFSLDP 267
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 129/309 (41%), Gaps = 46/309 (14%)
Query: 2 DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
D +K VP+ GHS V D +T DG + +SAS D + L + TG+ F GH
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61 KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
K V S +D A SGS D T K+W L H+ +V +D+
Sbjct: 107 KSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+++ G +K+++ ++LN+ +G++S +I T+ D T+++S G + LW+
Sbjct: 167 VTIISAGNDKMVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIMLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS 234
+ K + TL + V S S + ++ A + +K + S
Sbjct: 225 LAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF--------------------S 264
Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
L+P+ ++ D E G + + +S G++ +G D I
Sbjct: 265 LDPQ--------------YLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 295 RIWQTNPPN 303
R+WQ N
Sbjct: 311 RVWQVMTAN 319
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 116/267 (43%), Gaps = 30/267 (11%)
Query: 55 GTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDALTGDEK------HSFE-HKHI 104
GT EGH G V S A N L SA S D T W LTGD++ SF+ H HI
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSA--SRDKTLISWK-LTGDDQKFGVPVRSFKGHSHI 67
Query: 105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164
V+ C + D L+ ++K LR++D+ + R VG+ S + +V I+S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVMSVDIDKKASMIISGS 126
Query: 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-------YITTADGSSVKFWDANH 217
D +++W + + L V+ V + + I+ + VK W+ N
Sbjct: 127 RDK-TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ 185
Query: 218 FGL---VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVH 274
F + G+N NT +AS + G + + G+D + +++ ++ V
Sbjct: 186 FQIEADFIGHNSNINTLTASPD---GTLIASAGKDGEIMLWNL-AAKKAMYTLSAQDEVF 241
Query: 275 CVRFSPGGESYASGSEDGTIRIWQTNP 301
+ FSP A+ + G I+++ +P
Sbjct: 242 SLAFSPNRYWLAAATATG-IKVFSLDP 267
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/309 (24%), Positives = 128/309 (41%), Gaps = 46/309 (14%)
Query: 2 DKRKVAVPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
D +K VP+ GHS V D +T DG + +SAS D + L + TG+ F GH
Sbjct: 50 DDQKFGVPVRSFKGHSHIVQD---CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
Query: 61 KGAVWSCCLDANALFSASGSADFTAKLW----DALTGDEKHS--FEHKHIVRACAFSEDT 114
K V S +D A SGS D T K+W L H+ +V +D+
Sbjct: 107 KSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDS 166
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+++ G +K ++ ++LN+ +G++S +I T+ D T+++S G + LW+
Sbjct: 167 VTIISAGNDKXVKAWNLNQFQIEADFIGHNS-NINTLT-ASPDGTLIASAGKDGEIXLWN 224
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS 234
+ K TL + V S S + ++ A + +K + S
Sbjct: 225 LAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF--------------------S 264
Query: 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294
L+P+ ++ D E G +K + +S G++ +G D I
Sbjct: 265 LDPQ--------------YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 295 RIWQTNPPN 303
R+WQ N
Sbjct: 311 RVWQVXTAN 319
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 116/267 (43%), Gaps = 30/267 (11%)
Query: 55 GTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDALTGDEK------HSFE-HKHI 104
GT EGH G V S A N L SA S D T W LTGD++ SF+ H HI
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSA--SRDKTLISWK-LTGDDQKFGVPVRSFKGHSHI 67
Query: 105 VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164
V+ C + D L+ ++K LR++D+ + R VG+ S + +V I+S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKS-DVXSVDIDKKASXIISGS 126
Query: 165 TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-------YITTADGSSVKFWDANH 217
D +++W + + L V+ V + + I+ + VK W+ N
Sbjct: 127 RDK-TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQ 185
Query: 218 FGL---VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVH 274
F + G+N NT +AS + G + + G+D + +++ ++ V
Sbjct: 186 FQIEADFIGHNSNINTLTASPD---GTLIASAGKDGEIXLWNL-AAKKAXYTLSAQDEVF 241
Query: 275 CVRFSPGGESYASGSEDGTIRIWQTNP 301
+ FSP A+ + G I+++ +P
Sbjct: 242 SLAFSPNRYWLAAATATG-IKVFSLDP 267
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 102/250 (40%), Gaps = 42/250 (16%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDT 114
T +GH G V+S + S S D +W+ALT + H+ + H V CAF+ +
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 115 HLLLTGGFEKILRIFDL----NRPDAPP--REVGNSSGSIRTVAWLHSDQTILSSCTDSG 168
+ GG + IF+L +R P R + G + ++ +T L + +
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 169 GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC 228
LWD +G+ + ++ P TAD
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGH-----------TAD---------------------- 207
Query: 229 NTESASLEPKLGNIFIAGGEDMWVHVFDFH-TGEQIGCNKGHHGPVHCVRFSPGGESYAS 287
S S+ N+FI+G D V ++D T + GH G ++ V+F P G+ + +
Sbjct: 208 -VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT 266
Query: 288 GSEDGTIRIW 297
GS+DGT R++
Sbjct: 267 GSDDGTCRLF 276
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 119/293 (40%), Gaps = 40/293 (13%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GHS V D+ ++ DG F +S S D L + G F GH V S +
Sbjct: 428 GHSHFVEDVV---LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN 484
Query: 74 LFSASGSADFTAKLWDALTGDEKHSFE-----HKHIVRACAFSEDTH--LLLTGGFEKIL 126
S S D T KLW+ L G+ K++ H+ V FS +T +++ ++K +
Sbjct: 485 RQIVSASRDRTIKLWNTL-GECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
++++L+ G++ G + TVA + D ++ +S G V LWD GK + +LE
Sbjct: 544 KVWNLSNCKLRSTLAGHT-GYVSTVA-VSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601
Query: 187 KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAG 246
S + + S + ++ A +K WD +V+ + E+
Sbjct: 602 NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEA-------------- 647
Query: 247 GEDMWVHVFDFHTGEQIGCNKGHHGPVHC--VRFSPGGESYASGSEDGTIRIW 297
+ G ++C + +S G + SG DG IR+W
Sbjct: 648 -----------EKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 94/250 (37%), Gaps = 44/250 (17%)
Query: 55 GTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTGDEKHSFE------HKHIVRA 107
GT H V + NA S S D + LW D+ + H H V
Sbjct: 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167
S D L+G ++ LR++DL + R VG++ + +VA+ ++ I+S+ D
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTK-DVLSVAFSLDNRQIVSASRDR 494
Query: 168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP 227
++LW+ + +Y + G + W V
Sbjct: 495 T-IKLWNTLG--------------------ECKYTISEGGEGHRDW-------VSCVRFS 526
Query: 228 CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYAS 287
NT L+P + ++ D V V++ + GH G V V SP G AS
Sbjct: 527 PNT----LQPTI----VSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS 578
Query: 288 GSEDGTIRIW 297
G +DG + +W
Sbjct: 579 GGKDGVVLLW 588
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 240 GNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
G ++G D + ++D G GH V V FS S S D TI++W T
Sbjct: 442 GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT 501
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 119/297 (40%), Gaps = 57/297 (19%)
Query: 56 TFEGHKGAVWSC--CLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSE 112
T +GH V C D + S+S D +WD+ T +++H+ V ACA++
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSS--QDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAP 116
Query: 113 DTHLLLTGGFEKILRIFDLN-----RPDAPPREVGNSSGSIRTVAWLHSDQTILSS---- 163
+ GG + ++ L A + V + + ++ +SD IL++
Sbjct: 117 SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDG 176
Query: 164 ------------------------CTD-----------SGGV----RLWDARSGKIVQTL 184
C D SGG +WD RSG+ VQ
Sbjct: 177 TCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236
Query: 185 ET-KSPVTSAEVSRDG-RYITTADGSSVKFWDANHFGLVKGYNMPCNTESAS-LEPKL-G 240
ET +S V S G + + +D ++ + +D V Y+ AS ++ L G
Sbjct: 237 ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG 296
Query: 241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
+ AG D ++V+D G ++ GH V +R SP G ++ SGS D T+R+W
Sbjct: 297 RLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 22/179 (12%)
Query: 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD------ANALFSASGSADFTAKL 87
+++AS D + L + E+G + +F GH V CLD N SG D A +
Sbjct: 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVL--CLDLAPSETGNTF--VSGGCDKKAMV 224
Query: 88 WDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSS 145
WD +G +FE H+ V + + +G + R++DL R D REV S
Sbjct: 225 WDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL-RAD---REVAIYSK 280
Query: 146 GSI----RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDG 199
SI +V + S + + + D + +WD G V L ++ V++ VS DG
Sbjct: 281 ESIIFGASSVDFSLSGRLLFAGYNDY-TINVWDVLKGSRVSILFGHENRVSTLRVSPDG 338
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 267 KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
KGH V C+ + S S+DG + +W + N E
Sbjct: 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE 99
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 108/258 (41%), Gaps = 25/258 (9%)
Query: 57 FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTH 115
EGH V L N F+ S S D + +LW+ G ++ F H V + AFS D
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 116 LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-DQTILSSCTDSGGVRLWD 174
+++GG + LR++++ G + + V + S D ++ S V++WD
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 175 ARSGKIVQTLETKSP-VTSAEVSRDGRYITTADGSSV-KFWDANHFGLVKGYNMPCNTES 232
+G++V L+ + VTS VS DG ++D V + WD L KG + +E
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD-----LTKGEAL---SEM 234
Query: 233 ASLEP------KLGNIFIAGGEDMWVHVFDFHTGEQI-GCNKGHHGPVHCV------RFS 279
A+ P ++ + + +FD + I H G V +S
Sbjct: 235 AAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWS 294
Query: 280 PGGESYASGSEDGTIRIW 297
G + SG D IR+W
Sbjct: 295 ADGSTLYSGYTDNVIRVW 312
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 15/215 (6%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GHS V D+ ++ +G F VSAS D S L N + G F GH V S +
Sbjct: 65 GHSAFVSDV---ALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 74 LFSASGSADFTAKLWDALTGDEKHSFE---HKHIVRACAFSE--DTHLLLTGGFEKILRI 128
SG D ++W+ + G+ H+ H V FS D ++++GG++ ++++
Sbjct: 122 RQIVSGGRDNALRVWN-VKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 129 FDLNRPDAPPREVGNSSGSIRTV--AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
+DL A R V + G V + D ++ +S G RLWD G+ + +
Sbjct: 181 WDL----ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA 236
Query: 187 KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV 221
+P+ S + ++ A ++ +D + ++
Sbjct: 237 GAPINQICFSPNRYWMCAATEKGIRIFDLENKDII 271
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 12/169 (7%)
Query: 137 PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-VQTLETKSPVTSAEV 195
P R + S + VA L ++ S + +RLW+ ++G+ + L V S
Sbjct: 59 PDRRLEGHSAFVSDVA-LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAF 117
Query: 196 SRDGRYITTA-DGSSVKFWDAN---HFGLVKGYN---MPCNTESASLEPKLGNIFIAGGE 248
S D R I + ++++ W+ L +G + + C S SL+ + ++GG
Sbjct: 118 SPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAP---VIVSGGW 174
Query: 249 DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
D V V+D TG + KGH V V SP G AS +DG R+W
Sbjct: 175 DNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 9/166 (5%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
H+ V + +SP + D +VS D+ + + TG + +GH V S + +
Sbjct: 150 AHTDWVSCVRFSP-SLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDG 208
Query: 74 LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR 133
AS D A+LWD G+ + FS + + + EK +RIFDL
Sbjct: 209 SLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRY-WMCAATEKGIRIFDLEN 267
Query: 134 PDAPPREVGNSSGSIR------TVAWLHSDQTILSSCTDSGGVRLW 173
D GS + ++AW T+ S TD+ +R+W
Sbjct: 268 KDIIVELAPEHQGSKKIVPECVSIAWSADGSTLYSGYTDN-VIRVW 312
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 110/292 (37%), Gaps = 50/292 (17%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
T GH +++ ++ S S D +WD+ T ++ H+ + V CA++
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPR---------------------EVGNSSGSIRTVAW 153
+ + GG + I I++L + R ++ SSG W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 154 ----------------------LHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPV 190
L D + S +LWD R G QT +S +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 191 TSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGY---NMPCNTESASLEPKLGNIFIAG 246
+ +G + T +D ++ + +D + Y N+ C S S K G + +AG
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSGRLLLAG 288
Query: 247 GEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298
+D +V+D ++ G GH V C+ + G + A+GS D ++IW
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS 80
D+ + PD VS + D+S L + G TF GH+ + + C N A+GS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 81 ADFTAKLWDALTGDEKHSFEHKHI---VRACAFSEDTHLLLTGGFEKILRIFDLNRPD 135
D T +L+D E ++ H +I + + +FS+ LLL G + ++D + D
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 7/186 (3%)
Query: 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93
+V++S D++ L + ETG TF GH G V S L + SG+ D +AKLWD G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRT 150
+ +F H+ + A F + + TG + R+FDL R D N I +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 275
Query: 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSS 209
V++ S + +L+ D +WDA L + V+ V+ DG + T S
Sbjct: 276 VSFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 210 -VKFWD 214
+K W+
Sbjct: 335 FLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 110/291 (37%), Gaps = 50/291 (17%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
T GH +++ ++ S S D +WD+ T ++ H+ + V CA++
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPR---------------------EVGNSSGSIRTVAW 153
+ + GG + I I++L + R ++ SSG W
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 180
Query: 154 ----------------------LHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPV 190
L D + S +LWD R G QT +S +
Sbjct: 181 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 240
Query: 191 TSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGY---NMPCNTESASLEPKLGNIFIAG 246
+ +G + T +D ++ + +D + Y N+ C S S K G + +AG
Sbjct: 241 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSGRLLLAG 299
Query: 247 GEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
+D +V+D ++ G GH V C+ + G + A+GS D ++IW
Sbjct: 300 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS 80
D+ + PD VS + D+S L + G TF GH+ + + C N A+GS
Sbjct: 197 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 256
Query: 81 ADFTAKLWDALTGDEKHSFEHKHI---VRACAFSEDTHLLLTGGFEKILRIFDLNRPD 135
D T +L+D E ++ H +I + + +FS+ LLL G + ++D + D
Sbjct: 257 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 314
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 7/186 (3%)
Query: 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93
+V++S D++ L + ETG TF GH G V S L + SG+ D +AKLWD G
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 227
Query: 94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRT 150
+ +F H+ + A F + + TG + R+FDL R D N I +
Sbjct: 228 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 286
Query: 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSS 209
V++ S + +L+ D +WDA L + V+ V+ DG + T S
Sbjct: 287 VSFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 345
Query: 210 -VKFWD 214
+K W+
Sbjct: 346 FLKIWN 351
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 110/292 (37%), Gaps = 50/292 (17%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
T GH +++ ++ S S D +WD+ T ++ H+ + V CA++
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPR---------------------EVGNSSGSIRTVAW 153
+ + GG + I I++L + R ++ SSG W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 154 ----------------------LHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPV 190
L D + S +LWD R G QT +S +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 191 TSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGY---NMPCNTESASLEPKLGNIFIAG 246
+ +G + T +D ++ + +D + Y N+ C S S K G + +AG
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSGRLLLAG 288
Query: 247 GEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298
+D +V+D ++ G GH V C+ + G + A+GS D ++IW
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS 80
D+ + PD VS + D+S L + G TF GH+ + + C N A+GS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 81 ADFTAKLWDALTGDEKHSFEHKHI---VRACAFSEDTHLLLTGGFEKILRIFDLNRPD 135
D T +L+D E ++ H +I + + +FS+ LLL G + ++D + D
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 7/186 (3%)
Query: 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93
+V++S D++ L + ETG TF GH G V S L + SG+ D +AKLWD G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRT 150
+ +F H+ + A F + + TG + R+FDL R D N I +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 275
Query: 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSS 209
V++ S + +L+ D +WDA L + V+ V+ DG + T S
Sbjct: 276 VSFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 210 -VKFWD 214
+K W+
Sbjct: 335 FLKIWN 340
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 22/238 (9%)
Query: 68 CLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIV-----RACAFSEDTHLLLTGGF 122
CL + SG D T K+WD K++ E K I+ D +++TG
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWD------KNTLECKRILTGHTGSVLCLQYDERVIITGSS 191
Query: 123 EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ 182
+ +R++D+N + + + V L + ++ +C+ + +WD S +
Sbjct: 192 DSTVRVWDVNTGEMLNTLIHHCEA----VLHLRFNNGMMVTCSKDRSIAVWDMASPTDIT 247
Query: 183 TLETKSPVTSAE--VSRDGRYITTADGS-SVKFWDANHFGLVKGYNMPCNTESASLEPKL 239
+A V D +YI +A G ++K W+ + V+ N A L+ +
Sbjct: 248 LRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH-KRGIACLQYR- 305
Query: 240 GNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
+ ++G D + ++D G + +GH V C+RF + SG+ DG I++W
Sbjct: 306 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVW 361
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/220 (20%), Positives = 85/220 (38%), Gaps = 42/220 (19%)
Query: 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93
+VS +D++ + + T + GH G+V CL + +GS+D T ++WD TG
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTG 203
Query: 94 DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP-DAPPR------------- 139
+ ++ H H + +++T ++ + ++D+ P D R
Sbjct: 204 EMLNTLIH-HCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 262
Query: 140 ----------------EVGNSS---------GSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+V N+S G R +A L ++ S + +RLWD
Sbjct: 263 DFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWD 322
Query: 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWD 214
G ++ LE + + R ++ A +K WD
Sbjct: 323 IECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD 362
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 22/156 (14%)
Query: 155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAE-----VSRDGRYITT-ADGS 208
+ DQ I+S D+ +++WD TLE K +T + D R I T + S
Sbjct: 141 YDDQKIVSGLRDNT-IKIWDK------NTLECKRILTGHTGSVLCLQYDERVIITGSSDS 193
Query: 209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGN-IFIAGGEDMWVHVFDFHTGEQIGCNK 267
+V+ WD N ++ C A L + N + + +D + V+D + I +
Sbjct: 194 TVRVWDVNTGEMLNTLIHHCE---AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 250
Query: 268 ---GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
GH V+ V F + S S D TI++W T+
Sbjct: 251 VLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTS 284
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 225 NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES 284
N P N+ +L PK+ I E W H+ ++I C V+C+++ +
Sbjct: 91 NAPPNSFYRALYPKIIQ-DIETIESNWR--CGRHSLQRIHCRSETSKGVYCLQYD--DQK 145
Query: 285 YASGSEDGTIRIWQTN 300
SG D TI+IW N
Sbjct: 146 IVSGLRDNTIKIWDKN 161
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 110/292 (37%), Gaps = 50/292 (17%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
T GH +++ ++ S S D +WD+ T ++ H+ + V CA++
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPR---------------------EVGNSSGSIRTVAW 153
+ + GG + I I++L + R ++ SSG W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 154 ----------------------LHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPV 190
L D + S +LWD R G QT +S +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 191 TSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGY---NMPCNTESASLEPKLGNIFIAG 246
+ +G + T +D ++ + +D + Y N+ C S S K G + +AG
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSGRLLLAG 288
Query: 247 GEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298
+D +V+D ++ G GH V C+ + G + A+GS D ++IW
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS 80
D+ + PD VS + D+S L + G TF GH+ + + C N A+GS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 81 ADFTAKLWDALTGDEKHSFEHKHI---VRACAFSEDTHLLLTGGFEKILRIFDLNRPD 135
D T +L+D E ++ H +I + + +FS+ LLL G + ++D + D
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 7/186 (3%)
Query: 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93
+V++S D++ L + ETG TF GH G V S L + SG+ D +AKLWD G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRT 150
+ +F H+ + A F + + TG + R+FDL R D N I +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 275
Query: 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSS 209
V++ S + +L+ D +WDA L + V+ V+ DG + T S
Sbjct: 276 VSFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 210 -VKFWD 214
+K W+
Sbjct: 335 FLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 110/292 (37%), Gaps = 50/292 (17%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
T GH +++ ++ S S D +WD+ T ++ H+ + V CA++
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPR---------------------EVGNSSGSIRTVAW 153
+ + GG + I I++L + R ++ SSG W
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 154 ----------------------LHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPV 190
L D + S +LWD R G QT +S +
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 191 TSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGY---NMPCNTESASLEPKLGNIFIAG 246
+ +G + T +D ++ + +D + Y N+ C S S K G + +AG
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF-SKSGRLLLAG 288
Query: 247 GEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298
+D +V+D ++ G GH V C+ + G + A+GS D ++IW
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS 80
D+ + PD VS + D+S L + G TF GH+ + + C N A+GS
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 81 ADFTAKLWDALTGDEKHSFEHKHI---VRACAFSEDTHLLLTGGFEKILRIFDLNRPD 135
D T +L+D E ++ H +I + + +FS+ LLL G + ++D + D
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 7/186 (3%)
Query: 34 LVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93
+V++S D++ L + ETG TF GH G V S L + SG+ D +AKLWD G
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG--NSSGSIRT 150
+ +F H+ + A F + + TG + R+FDL R D N I +
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITS 275
Query: 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSS 209
V++ S + +L+ D +WDA L + V+ V+ DG + T S
Sbjct: 276 VSFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDS 334
Query: 210 -VKFWD 214
+K W+
Sbjct: 335 FLKIWN 340
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 103/244 (42%), Gaps = 27/244 (11%)
Query: 98 SFEHKHIVRACAFSEDTHLLLTGGFEK-----------ILRIFDLNRPDAPPREVGNSSG 146
S +H +V FS D L TG + + R+ D + + P + SS
Sbjct: 60 SLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 119
Query: 147 S-----IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGR 200
IR+V + D L++ + +R+WD + KIV L+ + + S + G
Sbjct: 120 PSSDLYIRSVCF-SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 178
Query: 201 YITTADGS-SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259
+ + G +V+ WD ++ + ++ P G AG D V V+D T
Sbjct: 179 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238
Query: 260 G---EQIGCNK----GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTG 312
G E++ GH V+ V F+ G+S SGS D ++++W N++ + S T
Sbjct: 239 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD-SKTP 297
Query: 313 NAQT 316
N+ T
Sbjct: 298 NSGT 301
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 88/204 (43%), Gaps = 25/204 (12%)
Query: 1 MDKRKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGH 60
++ RK+ ++ GH + + L Y P G LVS S D + + + TG T
Sbjct: 152 IENRKIV--MILQGHEQDIYSLDY---FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 206
Query: 61 KGAVWSCCLDANALFSASGSADFTAKLWDALTG--------DEKHSFEHKHIVRACAFSE 112
G + + A+GS D ++WD+ TG + + HK V + F+
Sbjct: 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR 266
Query: 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGS-----------IRTVAWLHSDQTIL 161
D +++G ++ +++++L + +SG+ + +VA +D+ IL
Sbjct: 267 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 326
Query: 162 SSCTDSGGVRLWDARSGKIVQTLE 185
S D GV WD +SG + L+
Sbjct: 327 SGSKDR-GVLFWDKKSGNPLLMLQ 349
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/299 (22%), Positives = 118/299 (39%), Gaps = 46/299 (15%)
Query: 16 SRPVVDLFYSPI--TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
S P DL+ + +PDG FL + ++D + + E + +GH+ ++S +
Sbjct: 118 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 177
Query: 74 LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFD-- 130
SGS D T ++WD TG + + V A S D + G ++ +R++D
Sbjct: 178 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 237
Query: 131 ----LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
+ R D+ S+ +V + Q+++S D V+LW+ ++ ++
Sbjct: 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDR-SVKLWNLQNAN--NKSDS 294
Query: 187 KSPVT-SAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245
K+P + + EV+ G H V N E ++
Sbjct: 295 KTPNSGTCEVTYIG-----------------HKDFVLSVATTQNDE----------YILS 327
Query: 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCV------RFSPGGESYASGSEDGTIRIWQ 298
G +D V +D +G + +GH V V P +A+GS D RIW+
Sbjct: 328 GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 20/135 (14%)
Query: 182 QTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVK-------GYNMPCNTESAS 234
++L+ S V + S DG Y+ T + + + + LV P N ++S
Sbjct: 59 KSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS 118
Query: 235 ------------LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGG 282
P G G ED + ++D + + +GH ++ + + P G
Sbjct: 119 SPSSDLYIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 177
Query: 283 ESYASGSEDGTIRIW 297
+ SGS D T+RIW
Sbjct: 178 DKLVSGSGDRTVRIW 192
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 29/173 (16%)
Query: 29 PDGFFLVSASKDSSPMLRNGETGDWI--GTFEGHKGAVWSCCLDANALFSASGSADFTAK 86
P L SAS D + L E DW+ T EGH+ VWS D + AS S D T +
Sbjct: 160 PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVR 219
Query: 87 LW-DALTGDEK----------------HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIF 129
+W L G+E+ S H + A+ + T L T + +R+F
Sbjct: 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVF 279
Query: 130 DLNRPDAPPREVGNS---------SGSIRTVAWLHSDQTILSSCTDSGGVRLW 173
+ P++ P++ S S + VAW + +L+SC+D G V W
Sbjct: 280 QED-PNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 19/171 (11%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPML--RNGETGDWIGTFEGHKGAVWSCCLDA 71
GH R V + +SP G +L SAS D++ + +N + + + T EGH+ V S
Sbjct: 59 GHQRTVRKVAWSPC---GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP 115
Query: 72 NALFSASGSADFTAKLWDALTGDE--------KHSFEHKHIVRACAFSEDTHLLLTGGFE 123
+ A+ S D + +W+ DE H+ + KH+V + LL + ++
Sbjct: 116 SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV----WHPSQELLASASYD 171
Query: 124 KILRIFDLNRPD-APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173
++++ D + ++ ++A+ S Q L+SC+D VR+W
Sbjct: 172 DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR-LASCSDDRTVRIW 221
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/235 (20%), Positives = 90/235 (38%), Gaps = 44/235 (18%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD-APPREVGNSSGSIRTVAWLHSDQT 159
H+ VR A+S + L + F+ I+ N+ D + +++VAW S
Sbjct: 60 HQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN- 118
Query: 160 ILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFG 219
+L++C+ V +W+ + + + T +D +++ + A++
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHT-----QDVKHVVWHPSQELLA-SASYDD 172
Query: 220 LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFS 279
VK Y ED WV +GH V + F
Sbjct: 173 TVKLYREE--------------------EDDWVCCATL---------EGHESTVWSLAFD 203
Query: 280 PGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFH 334
P G+ AS S+D T+RIW+ P +E+ + +G+ + K + + GFH
Sbjct: 204 PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICT-------LSGFH 251
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 266 NKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN---------HEENHSGTGNAQT 316
++GH V V +SP G AS S D T IW+ N + HE A +
Sbjct: 57 SEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS 116
Query: 317 GKLKASTDEVTRKIEGFHINKEGKAE 342
G L A+ + + + +++E + E
Sbjct: 117 GNLLATCSR-DKSVWVWEVDEEDEYE 141
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 100/209 (47%), Gaps = 18/209 (8%)
Query: 112 EDTHLLLTGGFEKILRIFDL--NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169
E++ ++TG + +++++ R D G+ G + +V H+ SS D+
Sbjct: 46 ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV-SVDISHTLPIAASSSLDAH- 103
Query: 170 VRLWDARSGKIVQTLETKSPVTSAEV--SRDGRYITTADGSSVKFWDANHFGLVKG---Y 224
+RLWD +GK +++++ PV + + S D +Y+ T G+ V N FG+ G Y
Sbjct: 104 IRLWDLENGKQIKSIDA-GPVDAWTLAFSPDSQYLAT--GTHVG--KVNIFGVESGKKEY 158
Query: 225 NMPCNTE---SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPG 281
++ + S + P G +G D +++FD TG+ + +GH P+ + FSP
Sbjct: 159 SLDTRGKFILSIAYSPD-GKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPD 217
Query: 282 GESYASGSEDGTIRIWQTNPPNHEENHSG 310
+ + S+DG I+I+ N SG
Sbjct: 218 SQLLVTASDDGYIKIYDVQHANLAGTLSG 246
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 5/168 (2%)
Query: 56 TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI-VRACAFSEDT 114
+ EGH+ V S + +AS S D +LWD G + S + + AFS D+
Sbjct: 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
L TG + IF + + I ++A+ D L+S G + ++D
Sbjct: 135 QYLATGTHVGKVNIFGV-ESGKKEYSLDTRGKFILSIAY-SPDGKYLASGAIDGIINIFD 192
Query: 175 ARSGKIVQTLETKS-PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGL 220
+GK++ TLE + P+ S S D + + TA D +K +D H L
Sbjct: 193 IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 77/172 (44%), Gaps = 6/172 (3%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GH VV + S P S+S D+ L + E G I + + W+ ++
Sbjct: 78 GHQLGVVSVDISHTLP---IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 74 LFSASGSADFTAKLWDALTGDEKHSFEHK-HIVRACAFSEDTHLLLTGGFEKILRIFDLN 132
+ A+G+ ++ +G +++S + + + + A+S D L +G + I+ IFD+
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA 194
Query: 133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL 184
G++ IR++ D +L + +D G ++++D + + TL
Sbjct: 195 TGKLLHTLEGHAM-PIRSLT-FSPDSQLLVTASDDGYIKIYDVQHANLAGTL 244
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 57/127 (44%), Gaps = 1/127 (0%)
Query: 20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG 79
VD + +PD +L + + + E+G + + + S + + ASG
Sbjct: 123 VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182
Query: 80 SADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP 138
+ D ++D TG H+ E H +R+ FS D+ LL+T + ++I+D+ +
Sbjct: 183 AIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG 242
Query: 139 REVGNSS 145
G++S
Sbjct: 243 TLSGHAS 249
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
GH+ P+ L +SP D LV+AS D + + + + GT GH V + +
Sbjct: 204 GHAMPIRSLTFSP---DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDD 260
Query: 74 LFSASGSADFTAKLWDALTGDEKHS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130
S S+D + K+WD T H+ F+H+ V ++ + +++ G ++ + I+D
Sbjct: 261 THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 28 TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL 87
+PDG +L S + D + + TG + T EGH + S ++ + S D K+
Sbjct: 173 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 232
Query: 88 WDALTGDEKHSFE-HKHIVRACAFS-EDTHL 116
+D + + H V AF +DTH
Sbjct: 233 YDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 127/322 (39%), Gaps = 40/322 (12%)
Query: 11 VCHGHSRPVVDL---FYSPITPDGFFLVSASKDSSPML-------RNGETGDWIGTFEGH 60
+ GHS V + F D L+S S+D + M+ +NG G GH
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLT 119
V L F+ S S D T +LWD TG F H+ V + AFS D +L+
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 120 GGFEKILRIFD-LNRPDAPPREVGNSSGSIRTVAW---LHSDQTI------LSSCTDSGG 169
G E+ +++++ L E N S + V + + S + +S G
Sbjct: 136 AGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195
Query: 170 VRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGL-VKGYNM 226
+++W+ + +I T + +S V +S +G+YI T + WD + + ++
Sbjct: 196 LKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA 254
Query: 227 PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGC-------------NKGHHGPV 273
+ PKL ++A G D V +F+ T + KG +
Sbjct: 255 GSTINQIAFNPKLQ--WVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQC 312
Query: 274 HCVRFSPGGESYASGSEDGTIR 295
+ ++ G+ +G DG IR
Sbjct: 313 TSLAWNALGKKLFAGFTDGVIR 334
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 99/258 (38%), Gaps = 47/258 (18%)
Query: 55 GTFEGHKGAVWSCCL------DANALFSASGSADFTAKLWDALTGDEKHSFE-------- 100
G EGH V S + ++ SGS D T +W ++ F
Sbjct: 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG 74
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160
H H V A S++ ++ ++K LR++DL R VG+ S + +VA+ ++ I
Sbjct: 75 HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQS-EVYSVAFSPDNRQI 133
Query: 161 LSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGL 220
LS+ + ++LW+ + + +SAE +++ S +
Sbjct: 134 LSAGAER-EIKLWN---------ILGECKFSSAEKENHSDWVSCVRYSPI---------- 173
Query: 221 VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN-KGHHGPVHCVRFS 279
M + P ++ G +W +T QI K H V+ + S
Sbjct: 174 -----MKSANKVQPFAPYFASVGWDGRLKVW------NTNFQIRYTFKAHESNVNHLSIS 222
Query: 280 PGGESYASGSEDGTIRIW 297
P G+ A+G +D + IW
Sbjct: 223 PNGKYIATGGKDKKLLIW 240
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 81/207 (39%), Gaps = 57/207 (27%)
Query: 111 SEDTHLLLTGGFEKILRIFDLNRPDA------PPREVGNSSGSIRTVAWLHSDQTILSSC 164
+ED+ +L++G +K + I+ L + P + + + + +A + +SS
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 165 TDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKG 223
D +RLWD R+G + +S V S S D R I +A
Sbjct: 96 WDKT-LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSA------------------ 136
Query: 224 YNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE 283
A E KL NI GE F + E+ + H V CVR+SP +
Sbjct: 137 --------GAEREIKLWNIL---GE------CKFSSAEK----ENHSDWVSCVRYSPIMK 175
Query: 284 S----------YASGSEDGTIRIWQTN 300
S +AS DG +++W TN
Sbjct: 176 SANKVQPFAPYFASVGWDGRLKVWNTN 202
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 8/151 (5%)
Query: 156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP---VTSAEVSRDGRYITTADGSS-VK 211
S +L+ D+ V LW A SG I+Q L+ + P ++S ++G Y+ S+ V+
Sbjct: 114 SSGNVLAVALDNS-VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 172
Query: 212 FWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ-IGCNKGHH 270
WD ++ NM ++ I +G +H D E + GH
Sbjct: 173 LWDVQQQKRLR--NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 230
Query: 271 GPVHCVRFSPGGESYASGSEDGTIRIWQTNP 301
V +R++P G ASG D + +W + P
Sbjct: 231 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 261
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 78/207 (37%), Gaps = 52/207 (25%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP------PREV-GNSSGSIRTVAW 153
H V ++ D L +GG + ++ ++ P AP P + G+++ VAW
Sbjct: 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVW----PSAPGEGGWVPLQTFTQHQGAVKAVAW 284
Query: 154 LHSDQTILSSC--TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVK 211
+L++ T +R+W+ SG + ++ S V S
Sbjct: 285 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSI------------------ 326
Query: 212 FWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHG 271
W ++ L+ G+ N + ++ + T ++ KGH
Sbjct: 327 LWSPHYKELISGHGFAQNQ---------------------LVIWKYPTMAKVAELKGHTS 365
Query: 272 PVHCVRFSPGGESYASGSEDGTIRIWQ 298
V + SP G + AS + D T+R+W+
Sbjct: 366 RVLSLTMSPDGATVASAAADETLRLWR 392
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 8/151 (5%)
Query: 156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP---VTSAEVSRDGRYITTADGSS-VK 211
S +L+ D+ V LW A SG I+Q L+ + P ++S ++G Y+ S+ V+
Sbjct: 125 SSGNVLAVALDNS-VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 183
Query: 212 FWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ-IGCNKGHH 270
WD ++ NM ++ I +G +H D E + GH
Sbjct: 184 LWDVQQQKRLR--NMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 241
Query: 271 GPVHCVRFSPGGESYASGSEDGTIRIWQTNP 301
V +R++P G ASG D + +W + P
Sbjct: 242 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 272
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/207 (19%), Positives = 78/207 (37%), Gaps = 52/207 (25%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP------PREV-GNSSGSIRTVAW 153
H V ++ D L +GG + ++ ++ P AP P + G+++ VAW
Sbjct: 240 HSQEVCGLRWAPDGRHLASGGNDNLVNVW----PSAPGEGGWVPLQTFTQHQGAVKAVAW 295
Query: 154 LHSDQTILSSC--TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVK 211
+L++ T +R+W+ SG + ++ S V S
Sbjct: 296 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSI------------------ 337
Query: 212 FWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHG 271
W ++ L+ G+ N + ++ + T ++ KGH
Sbjct: 338 LWSPHYKELISGHGFAQNQ---------------------LVIWKYPTMAKVAELKGHTS 376
Query: 272 PVHCVRFSPGGESYASGSEDGTIRIWQ 298
V + SP G + AS + D T+R+W+
Sbjct: 377 RVLSLTMSPDGATVASAAADETLRLWR 403
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 107/230 (46%), Gaps = 20/230 (8%)
Query: 77 ASGSADFTAKLW---DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILR---IFD 130
AS S D T +LW D G ++ + + + + + LLL GG + + +F
Sbjct: 33 ASVSRDGTVRLWSKDDQWLGTVVYT--GQGFLNSVCYDSEKELLLFGGKDTXINGVPLFA 90
Query: 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSP 189
+ D +G+ G++ ++++ D ++S D ++W + G +V L+ +
Sbjct: 91 TSGEDPLYTLIGHQ-GNVCSLSF--QDGVVISGSWDKTA-KVW--KEGSLVYNLQAHNAS 144
Query: 190 VTSAEVSR--DGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247
V A+V + +++T + ++K W + ++K ++ N L FI+
Sbjct: 145 VWDAKVVSFSENKFLTASADKTIKLWQNDK--VIKTFSGIHNDVVRHLAVVDDGHFISCS 202
Query: 248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
D + + D HTG+ + +GH V+C++ P G+ + G ED T+RIW
Sbjct: 203 NDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCG-EDRTVRIW 251
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
Query: 26 PITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85
+ DG F +S S D L + TGD + T+EGH+ V+ L N + G D T
Sbjct: 191 AVVDDGHF-ISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGE-DRTV 248
Query: 86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIF 129
++W G K I ++ G + ++RIF
Sbjct: 249 RIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRIF 292
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 9/137 (6%)
Query: 51 GDWIGTFEGHKGAVWS---CCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRA 107
G + + H +VW N +AS AD T KLW + S H +VR
Sbjct: 132 GSLVYNLQAHNASVWDAKVVSFSENKFLTAS--ADKTIKLWQNDKVIKTFSGIHNDVVRH 189
Query: 108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167
A +D H + + ++++ D + D G+ S + + L + + SC +
Sbjct: 190 LAVVDDGHFISCSN-DGLIKLVDXHTGDVLRTYEGHES-FVYCIKLLPNGDIV--SCGED 245
Query: 168 GGVRLWDARSGKIVQTL 184
VR+W +G + Q +
Sbjct: 246 RTVRIWSKENGSLKQVI 262
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 7/137 (5%)
Query: 170 VRLWDARSGKIVQTLETKSP---VTSAEVSRDGRYITTADGSS-VKFWDANHFGLVKGYN 225
V LW A SG I+Q L+ + P ++S ++G Y+ S+ V+ WD ++ N
Sbjct: 47 VYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR--N 104
Query: 226 MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ-IGCNKGHHGPVHCVRFSPGGES 284
M ++ I +G +H D E + GH V +R++P G
Sbjct: 105 MTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH 164
Query: 285 YASGSEDGTIRIWQTNP 301
ASG D + +W + P
Sbjct: 165 LASGGNDNLVNVWPSAP 181
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/207 (19%), Positives = 77/207 (37%), Gaps = 52/207 (25%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP-------PREVGNSSGSIRTVAW 153
H V ++ D L +GG + ++ ++ P AP + G+++ VAW
Sbjct: 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVW----PSAPGEGGWVPLQTFTQHQGAVKAVAW 204
Query: 154 LHSDQTILSSC--TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVK 211
+L++ T +R+W+ SG + ++ S V S
Sbjct: 205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSI------------------ 246
Query: 212 FWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHG 271
W ++ L+ G+ N + ++ + T ++ KGH
Sbjct: 247 LWSPHYKELISGHGFAQNQ---------------------LVIWKYPTMAKVAELKGHTS 285
Query: 272 PVHCVRFSPGGESYASGSEDGTIRIWQ 298
V + SP G + AS + D T+R+W+
Sbjct: 286 RVLSLTMSPDGATVASAAADETLRLWR 312
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 12/203 (5%)
Query: 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
+++ S D + N TG+ + FE H + S + + SGS D T KLW+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 93 G-DEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIR 149
+ +FE H+H V AF+ +D +G ++ ++++ L + ++G R
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQER 185
Query: 150 TVAWLH----SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR--YIT 203
V ++ D+ + + +D +++WD ++ V TLE S V I+
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 204 TADGSSVKFWDANHFGLVKGYNM 226
++ ++K W+++ + + K N+
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNV 268
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 89/225 (39%), Gaps = 12/225 (5%)
Query: 85 AKLWDALTGDEKHSFEHKHI-VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143
+LW+ T E S + VRA F + ++ G + +R+F+ N + +
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV-VDFEA 95
Query: 144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYI 202
IR++A +H + + S +D V+LW+ + + QT E
Sbjct: 96 HPDYIRSIA-VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 203 TTADG---SSVKFWDANH----FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF 255
T A G +VK W F L G N P I +D+ + ++
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD-KPYMITASDDLTIKIW 213
Query: 256 DFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
D+ T + +GH V F P SGSEDGT++IW ++
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
G R V + Y P+ PD ++++AS D + + + +T + T EGH V
Sbjct: 182 GQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 74 LFSASGSADFTAKLWDALT 92
SGS D T K+W++ T
Sbjct: 241 PIIISGSEDGTLKIWNSST 259
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 92/203 (45%), Gaps = 12/203 (5%)
Query: 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
+++ S D + N TG+ + FE H + S + + SGS D T KLW+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 93 G-DEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIR 149
+ +FE H+H V AF+ +D +G ++ ++++ L + ++G R
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQER 185
Query: 150 TVAWLH----SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR--YIT 203
V ++ D+ + + +D +++WD ++ V TLE S V I+
Sbjct: 186 GVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 204 TADGSSVKFWDANHFGLVKGYNM 226
++ ++K W+++ + + K N+
Sbjct: 246 GSEDGTLKIWNSSTYKVEKTLNV 268
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 89/225 (39%), Gaps = 12/225 (5%)
Query: 85 AKLWDALTGDEKHSFEHKHI-VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143
+LW+ T E S + VRA F + ++ G + +R+F+ N + +
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV-VDFEA 95
Query: 144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYI 202
IR++A +H + + S +D V+LW+ + + QT E
Sbjct: 96 HPDYIRSIA-VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 203 TTADG---SSVKFWDANH----FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF 255
T A G +VK W F L G N P I +D+ + ++
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD-KPYMITASDDLTIKIW 213
Query: 256 DFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300
D+ T + +GH V F P SGSEDGT++IW ++
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS 258
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
G R V + Y P+ PD ++++AS D + + + +T + T EGH V
Sbjct: 182 GQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 74 LFSASGSADFTAKLWDALT 92
SGS D T K+W++ T
Sbjct: 241 PIIISGSEDGTLKIWNSST 259
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 31/249 (12%)
Query: 77 ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFS--EDTHLLLTGGFE-KILRIFDLNR 133
S S D T K+WD T F + V + S H L+ G +++ DL
Sbjct: 116 TSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175
Query: 134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR------------SGKIV 181
G+ I V+W IL++ + V+LWD R +GK
Sbjct: 176 GSCSHILQGHRQ-EILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234
Query: 182 QTLETKSPVTSAEV-----SRDGRYI-TTADGSSVKFWDA-NHFGLVKGYNMPCNTESAS 234
Q +E+ + + +V + DG ++ T + ++ W++ N + Y CN
Sbjct: 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKG 294
Query: 235 LEPKLGN------IFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASG 288
L+ + +F+ G + V+ ++GEQI KGH+ V C F + SG
Sbjct: 295 LKFTVSCGCSSEFVFVPYGST--IAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG 352
Query: 289 SEDGTIRIW 297
S D I W
Sbjct: 353 SRDCNILAW 361
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/299 (19%), Positives = 115/299 (38%), Gaps = 69/299 (23%)
Query: 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
++++ + D + + ++ GH G VW+ A+ SGS D T ++WD
Sbjct: 134 YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKK 192
Query: 93 GDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNR---------------- 133
G H FE H VR E + ++TG + L ++ L +
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 134 ---PDAPPREVGNSSG---SIRTVA----------------------------------- 152
P+ P VG G S+RTV+
Sbjct: 253 FHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR 312
Query: 153 -----WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG 207
+ H + +S+ D+ +R+WD +G+++ TL+ + + D ++ A
Sbjct: 313 IYSTIYDHERKRCISASMDTT-IRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAAD 371
Query: 208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN 266
S++ WDAN + Y+ N + + NI ++G E+ + ++++ +G+ + N
Sbjct: 372 GSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQF-NIYNLRSGKLVHAN 428
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 103/254 (40%), Gaps = 44/254 (17%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFD-LNRPDAPPREVGNSSGSIRTVAWLHSDQT 159
H V C ED +++ TG +K++R++D +N+ ++ G + + + H
Sbjct: 120 HMTSVITCLQFEDNYVI-TGADDKMIRVYDSINKKFLL--QLSGHDGGVWALKYAHGG-- 174
Query: 160 ILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEV--SRDGRYITT-ADGSSVKFW-- 213
IL S + VR+WD + G E S V ++ ++ +YI T + +++ W
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 214 ------------------------DANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED 249
+ G+++G+ T S GNI ++G D
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH-----GNIVVSGSYD 289
Query: 250 MWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHS 309
+ V+D + + GH ++ + + S S D TIRIW + N E ++
Sbjct: 290 NTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIW--DLENGELMYT 347
Query: 310 GTGN-AQTGKLKAS 322
G+ A G L+ S
Sbjct: 348 LQGHTALVGLLRLS 361
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 96/207 (46%), Gaps = 20/207 (9%)
Query: 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD--- 89
+++ S D + N TG+ + FE H + S + + SGS D T KLW+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 90 --ALTGDEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS 145
AL + +FE H+H V AF+ +D +G ++ ++++ L + P + ++
Sbjct: 129 NWAL----EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTL--TT 181
Query: 146 GSIRTVAWLHS----DQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR- 200
G R V ++ D+ + + +D +++WD ++ V TLE S V
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 201 -YITTADGSSVKFWDANHFGLVKGYNM 226
I+ ++ ++K W+++ + + K N+
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNV 268
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 88/224 (39%), Gaps = 12/224 (5%)
Query: 85 AKLWDALTGDEKHSFEHKHI-VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143
+LW+ T E S + VRA F + ++ G + +R+F+ N + +
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV-DFEA 95
Query: 144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYI 202
IR++A +H + + S +D V+LW+ + + QT E
Sbjct: 96 HPDYIRSIA-VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 203 TTADG---SSVKFWDANH----FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF 255
T A G +VK W F L G N P I +D+ + ++
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD-KPYMITASDDLTIKIW 213
Query: 256 DFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
D+ T + +GH V F P SGSEDGT++IW +
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA 73
G R V + Y P+ PD ++++AS D + + + +T + T EGH V
Sbjct: 182 GQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 74 LFSASGSADFTAKLWDALT 92
SGS D T K+W++ T
Sbjct: 241 PIIISGSEDGTLKIWNSST 259
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 96/207 (46%), Gaps = 20/207 (9%)
Query: 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD--- 89
+++ S D + N TG+ + FE H + S + + SGS D T KLW+
Sbjct: 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128
Query: 90 --ALTGDEKHSFE-HKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS 145
AL + +FE H+H V AF+ +D +G ++ ++++ L + P + ++
Sbjct: 129 NWAL----EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS-TPNFTL--TT 181
Query: 146 GSIRTVAWLHS----DQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR- 200
G R V ++ D+ + + +D +++WD ++ V TLE S V
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLP 241
Query: 201 -YITTADGSSVKFWDANHFGLVKGYNM 226
I+ ++ ++K W+++ + + K N+
Sbjct: 242 IIISGSEDGTLKIWNSSTYKVEKTLNV 268
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 88/224 (39%), Gaps = 12/224 (5%)
Query: 85 AKLWDALTGDEKHSFEHKHI-VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143
++W+ T E S + VRA F + ++ G + +R+F+ N + +
Sbjct: 37 VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV-DFEA 95
Query: 144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYI 202
IR++A +H + + S +D V+LW+ + + QT E
Sbjct: 96 HPDYIRSIA-VHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 203 TTADG---SSVKFWDANH----FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF 255
T A G +VK W F L G N P I +D+ + ++
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPD-KPYMITASDDLTIKIW 213
Query: 256 DFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299
D+ T + +GH V F P SGSEDGT++IW +
Sbjct: 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNS 257
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD 70
+ G R V + Y P+ PD ++++AS D + + + +T + T EGH V
Sbjct: 179 LTTGQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFH 237
Query: 71 ANALFSASGSADFTAKLWDALT 92
SGS D T K+W++ T
Sbjct: 238 PTLPIIISGSEDGTLKIWNSST 259
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/299 (19%), Positives = 114/299 (38%), Gaps = 69/299 (23%)
Query: 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92
++++ + D + + ++ GH G VW+ A+ SGS D T ++WD
Sbjct: 134 YVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKK 192
Query: 93 GDEKHSFE-HKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNR---------------- 133
G H FE H VR E + ++TG + L ++ L +
Sbjct: 193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252
Query: 134 ---PDAPPREVGNSSG---SIRTVA----------------------------------- 152
P+ P VG G S+RTV+
Sbjct: 253 FHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDR 312
Query: 153 -----WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG 207
+ H + +S+ D+ +R+WD +G++ TL+ + + D ++ A
Sbjct: 313 IYSTIYDHERKRCISASXDTT-IRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAAD 371
Query: 208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN 266
S++ WDAN + Y+ N + + NI ++G E+ + ++++ +G+ + N
Sbjct: 372 GSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGSENQF-NIYNLRSGKLVHAN 428
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 198 DGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESA---SLEPKLGNIFIAGGEDMWVHV 254
D IT AD ++ +D+ + K + + + +L+ G I ++G D V V
Sbjct: 132 DNYVITGADDKXIRVYDS----INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRV 187
Query: 255 FDFHTGEQIGCNKGHHGPVHCVRF--SPGGESYASGSEDGTIRIW----QTNPPNHEENH 308
+D G +GH+ V C+ + +GS D T+ +W +++ P+H E H
Sbjct: 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH 247
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 56/254 (22%), Positives = 102/254 (40%), Gaps = 44/254 (17%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFD-LNRPDAPPREVGNSSGSIRTVAWLHSDQT 159
H V C ED +++ TG +K +R++D +N+ ++ G + + + H
Sbjct: 120 HXTSVITCLQFEDNYVI-TGADDKXIRVYDSINKKFLL--QLSGHDGGVWALKYAHGG-- 174
Query: 160 ILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEV--SRDGRYITT-ADGSSVKFW-- 213
IL S + VR+WD + G E S V ++ ++ +YI T + +++ W
Sbjct: 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKL 234
Query: 214 ------------------------DANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED 249
+ G+++G+ T S GNI ++G D
Sbjct: 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGH-----GNIVVSGSYD 289
Query: 250 MWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHS 309
+ V+D + + GH ++ + + S S D TIRIW + N E ++
Sbjct: 290 NTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIW--DLENGELXYT 347
Query: 310 GTGN-AQTGKLKAS 322
G+ A G L+ S
Sbjct: 348 LQGHTALVGLLRLS 361
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 87/206 (42%), Gaps = 10/206 (4%)
Query: 99 FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR---EVGNSSGSIRTVAWLH 155
+ +R+C D L+ GG L I+DL P PR E+ +S+ + +A +
Sbjct: 94 LNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT--PRIKAELTSSAPACYALA-IS 150
Query: 156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSA-EVSRDGRYITTAD-GSSVKFW 213
D + SC G + +WD + +V+ + + S ++S DG + T ++V+ W
Sbjct: 151 PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
Query: 214 DANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPV 273
D ++ ++ S P G G E V V + ++ + H V
Sbjct: 211 DLREGRQLQQHDFTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVNKPDKYQLHL-HESCV 268
Query: 274 HCVRFSPGGESYASGSEDGTIRIWQT 299
++F+ G+ + S +D + W+T
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRT 294
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 99/236 (41%), Gaps = 20/236 (8%)
Query: 89 DALTGD-------EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP--DAPPR 139
DAL G + ++ H +V A S T + TGG + ++++D++ P +P
Sbjct: 31 DALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS 89
Query: 140 EVG--NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD--ARSGKIVQTLETKSPVTSA-E 194
++ N IR+ L T++ ++ + +WD A + +I L + +P A
Sbjct: 90 QLDCLNRDNYIRSCKLLPDGCTLIVG-GEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148
Query: 195 VSRDGR--YITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWV 252
+S D + + +DG+ + WD ++ LV+ + + S G GG D V
Sbjct: 149 ISPDSKVCFSCCSDGN-IAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTV 207
Query: 253 HVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENH 308
+D G Q+ + + + P GE A G E + + N P+ + H
Sbjct: 208 RSWDLREGRQLQ-QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH 262
Score = 36.2 bits (82), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 70/223 (31%), Gaps = 58/223 (26%)
Query: 176 RSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFG------LVKGYNMPCN 229
R + + TL V + +S R++ T VK WD +H G + N
Sbjct: 40 RHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNY 99
Query: 230 TESASLEPKLGNIFIAGGE----DMW---------------------------------- 251
S L P G I GGE +W
Sbjct: 100 IRSCKLLPD-GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158
Query: 252 ------VHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305
+ V+D H + +GH C+ S G +G D T+R W
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
Query: 306 ENHSGT------GNAQTGKLKASTDEVTRKIEGFHINKEGKAE 342
+ H T G TG+ A E + +E H+NK K +
Sbjct: 219 QQHDFTSQIFSLGYCPTGEWLAVGME-SSNVEVLHVNKPDKYQ 260
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 71/181 (39%), Gaps = 44/181 (24%)
Query: 128 IFDLNRPDAPPREVGNSSG-----SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ 182
I+ P+ P E ++G + VAW+ +++S DSG V LW +
Sbjct: 72 IWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVAS--DSGAVELW--------E 121
Query: 183 TLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNI 242
LE +S + + KF H +VK ++ + G
Sbjct: 122 ILEKESLLVN------------------KFAKYEHDDIVKTLSVFSD----------GTQ 153
Query: 243 FIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES-YASGSEDGTIRIWQTNP 301
++GG+D V V+D + H V+CV PG ++ + S EDG I +W T
Sbjct: 154 AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK 213
Query: 302 P 302
P
Sbjct: 214 P 214
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 85 AKLWDALTGDEKHS--------FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA 136
+LW+ L EK S +EH IV+ + D ++GG + ++++DL++ A
Sbjct: 117 VELWEIL---EKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK-A 172
Query: 137 PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK 179
+ S + VA TI SC + G + LWD R K
Sbjct: 173 VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK 215
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 76 SASGSADFTAKLWD-----ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130
+ SG DF+ K+WD L HS E + V AC +DT L G +IL ++D
Sbjct: 154 AVSGGKDFSVKVWDLSQKAVLKSYNAHSSE-VNCVAACP-GKDTIFLSCGEDGRIL-LWD 210
Query: 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD-SGGVRLWDARSGKIVQT 183
+P R +S +I T H ++ +C D +G V L + ++ QT
Sbjct: 211 TRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT 264
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 7/167 (4%)
Query: 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS-FEHKHIVRACAFSE 112
IGT +GH V ++ L ASG D ++WDA + K + H V+A A+
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCP 269
Query: 113 -DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL-HSDQTILSSCTDSGGV 170
++LL TGG +I N ++ + ++ W HS + + + +
Sbjct: 270 WQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNL 329
Query: 171 RLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITT-ADGSSVKFW 213
+W S + + ++ + V + +S DGR ++T A ++KFW
Sbjct: 330 SIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 22/140 (15%)
Query: 170 VRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP 227
V +W+A SG + ET + V S + S DG +++ G+ GLV Y++
Sbjct: 115 VYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN----------GLVDIYDVE 164
Query: 228 CNTESASL---EPKLG------NIFIAGGEDMWVHVFDFHTGE-QIGCNKGHHGPVHCVR 277
T+ ++ + ++G ++ +G +H D QIG +GH V +
Sbjct: 165 SQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLA 224
Query: 278 FSPGGESYASGSEDGTIRIW 297
+ G ASG D ++IW
Sbjct: 225 WRSDGLQLASGGNDNVVQIW 244
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 22/181 (12%)
Query: 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCC 68
V HS+ V + + P L S+S D + + DW + GH+G VWS
Sbjct: 148 VLQEHSQDVKHVIWHPSEA---LLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSD 204
Query: 69 LD-ANALFS-ASGSADFTAKLWDALTGDEKHSFE----------HKHIVRACAFSEDTHL 116
D +F SGS D T ++W + DE E HK V A+ + L
Sbjct: 205 FDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-L 263
Query: 117 LLTGGFEKILRIF---DLNRPDAPPREVGNSSGSIRTVAWLHSD-QTILSSCTDSGGVRL 172
+ + G + +L ++ D R + + I V WL + +TIL++ D G V
Sbjct: 264 IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNF 323
Query: 173 W 173
W
Sbjct: 324 W 324
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 58/134 (43%), Gaps = 18/134 (13%)
Query: 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKL----WDALTG-DEKHSFEHKHIVRAC 108
I + + +K +WS D + A+GS D KL +D T D HK +R+
Sbjct: 7 IKSLKLYKEKIWS--FDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSV 64
Query: 109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE--------VGNSSGSIRTVAWLHSDQTI 160
A+ T LL G F+ + I+ + ++ R + ++ VAW +D
Sbjct: 65 AWRPHTSLLAAGSFDSTVSIW--AKEESADRTFEMDLLAIIEGHENEVKGVAW-SNDGYY 121
Query: 161 LSSCTDSGGVRLWD 174
L++C+ V +W+
Sbjct: 122 LATCSRDKSVWIWE 135
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 75 FSASGSADFTAKLWDALTGDEKHSF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130
F A+ S D T K+WD K SF H+H V A FS D LLT + +R++
Sbjct: 266 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 325
Query: 131 LNRPDAP 137
++ D P
Sbjct: 326 ASQWDCP 332
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 75 FSASGSADFTAKLWDALTGDEKHSF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130
F A+ S D T K+WD K SF H+H V A FS D LLT + +R++
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324
Query: 131 LNRPDAP 137
++ D P
Sbjct: 325 ASQWDCP 331
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 75 FSASGSADFTAKLWDALTGDEKHSF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130
F A+ S D T K+WD K SF H+H V A FS D LLT + +R++
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYS 324
Query: 131 LNRPDAP 137
++ D P
Sbjct: 325 ASQWDCP 331
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 14/145 (9%)
Query: 202 ITTADGSSVKFW--DANHFGLVKGYNMPCNTESASLEPKL-----GNIFIAGGEDMWVHV 254
+ +D +V+ W D N +V + C E + + G ++G +D+ + V
Sbjct: 97 LVASDSGAVELWELDENETLIVSKF---CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153
Query: 255 FDFHTGEQIGCNKGHHGPVHCVRFSPGGES-YASGSEDGTIRIWQTNPPNHEENHSGTGN 313
+D + + H V CV SP +S + S SED I +W T P + S G
Sbjct: 154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP---KPASQIGC 210
Query: 314 AQTGKLKASTDEVTRKIEGFHINKE 338
+ G L S ++ E F E
Sbjct: 211 SAPGYLPTSLAWHPQQSEVFVFGDE 235
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 72/183 (39%), Gaps = 19/183 (10%)
Query: 134 PDAPPREVGNSSGSIRTVA------WLHSDQTILSSCTDSGGVRLW--DARSGKIVQTL- 184
P A P E G S ++T A W+ +++S DSG V LW D IV
Sbjct: 66 PCAAPNE-GFCSAGVQTEAGVADLTWVGERGILVAS--DSGAVELWELDENETLIVSKFC 122
Query: 185 --ETKSPVTSAEVSRDG-RYITTADGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLG 240
E V++ V G + ++ + +K WD ++ Y + P
Sbjct: 123 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD 182
Query: 241 NIFIAGGEDMWVHVFDFHT---GEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297
++F++ ED + ++D QIGC+ + P E + G E+GT+ +
Sbjct: 183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV 242
Query: 298 QTN 300
T
Sbjct: 243 DTK 245
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 39/199 (19%), Positives = 72/199 (36%), Gaps = 39/199 (19%)
Query: 99 FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158
+EH IV + ++G + ++++DL + +++ A H D
Sbjct: 124 YEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDS 183
Query: 159 TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHF 218
LS C++ + LWD R K + +P
Sbjct: 184 VFLS-CSEDNRILLWDTRCPKPASQIGCSAP----------------------------- 213
Query: 219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRF 278
GY +P S + P+ +F+ G E+ V + D + + + H V + F
Sbjct: 214 ----GY-LP---TSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF 265
Query: 279 SPGGESY-ASGSEDGTIRI 296
SP + AS SED ++ +
Sbjct: 266 SPHSVPFLASLSEDCSLAV 284
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 29 PDGFFLVSASKDSSPMLRNGETGDWIGTFE-------GHKGAVWSCCLDANALFSASGSA 81
PDG S D + +L NG G G FE H G+V+ + AS SA
Sbjct: 200 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 259
Query: 82 DFTAKLWDALT 92
D T K+W+ T
Sbjct: 260 DKTIKIWNVAT 270
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 196 SRDGRYITTADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHV 254
SR R I+ +D ++V ++ F + S P G++F + G D + +
Sbjct: 158 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVL 216
Query: 255 FDFHTGEQIGC-------NKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298
++ G + G N H G V + +SP G AS S D TI+IW
Sbjct: 217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWN 267
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--GNSSGSIRTVAWLHSDQ 158
H V ++S D L TG + + ++++N+P P + ++ S+ +V WL+ +
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ET 593
Query: 159 TILSSCTDSGGVRLWDA 175
TI+S+ DS ++ W+
Sbjct: 594 TIVSAGQDS-NIKFWNV 609
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 269 HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN 303
H V CV +SP A+GS D ++ +W N P+
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 200 RYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLE--PKLGNIFIAGGEDMWVHVFDF 257
R+I +K D+N F L + + +E L+ P G I+ +DM + ++
Sbjct: 108 RFILGTTEGDIKVLDSN-FNLQREIDQAHVSEITKLKFFPS-GEALISSSQDMQLKIWSV 165
Query: 258 HTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298
G GH V + G + S S DGTIR+W+
Sbjct: 166 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%)
Query: 29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW 88
P G L+S+S+D + + + G T GH+ V + S S D T +LW
Sbjct: 146 PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
Query: 89 DALTGDEKHSFEHK 102
+ TG H+F K
Sbjct: 206 ECGTGTTIHTFNRK 219
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 77/201 (38%), Gaps = 38/201 (18%)
Query: 138 PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK---------- 187
PR + ++ +A + + +LS+ D G +RLW+ +G + T K
Sbjct: 171 PRTLIGHRATVTDIAIIDRGRNVLSASLD-GTIRLWECGTGTTIHTFNRKENPHDGVNSI 229
Query: 188 ---------------SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP----C 228
S + E G+Y+ S V N F + +P C
Sbjct: 230 ALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFSKEQTIQLPSKFTC 288
Query: 229 NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE----QIGCNKGHHGPVHCVRFSPGGES 284
+ S +++ N AG E+ + +D + E + N+G P++ V F+ G
Sbjct: 289 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG--TPINNVYFAAGALF 346
Query: 285 YASGSEDGTIRIWQTNPPNHE 305
+SG D +I++ + P E
Sbjct: 347 VSSGF-DTSIKLDIISDPESE 366
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 200 RYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLE--PKLGNIFIAGGEDMWVHVFDF 257
R+I +K D+N F L + + +E L+ P G I+ +DM + ++
Sbjct: 111 RFILGTTEGDIKVLDSN-FNLQREIDQAHVSEITKLKFFPS-GEALISSSQDMQLKIWSV 168
Query: 258 HTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298
G GH V + G + S S DGTIR+W+
Sbjct: 169 KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%)
Query: 29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW 88
P G L+S+S+D + + + G T GH+ V + S S D T +LW
Sbjct: 149 PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
Query: 89 DALTGDEKHSFEHK 102
+ TG H+F K
Sbjct: 209 ECGTGTTIHTFNRK 222
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 77/201 (38%), Gaps = 38/201 (18%)
Query: 138 PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK---------- 187
PR + ++ +A + + +LS+ D G +RLW+ +G + T K
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLD-GTIRLWECGTGTTIHTFNRKENPHDGVNSI 232
Query: 188 ---------------SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP----C 228
S + E G+Y+ S V N F + +P C
Sbjct: 233 ALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFSKEQTIQLPSKFTC 291
Query: 229 NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE----QIGCNKGHHGPVHCVRFSPGGES 284
+ S +++ N AG E+ + +D + E + N+G P++ V F+ G
Sbjct: 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEG--TPINNVYFAAGALF 349
Query: 285 YASGSEDGTIRIWQTNPPNHE 305
+SG D +I++ + P E
Sbjct: 350 VSSGF-DTSIKLDIISDPESE 369
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 30/184 (16%)
Query: 127 RIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186
RI PDA G+IR LH I T + +WD + + ++
Sbjct: 47 RIMSQEMPDA---------GTIRM---LHRTNYIAFVSTKKELLHIWDDVKKQDITRVKL 94
Query: 187 KSPVTSAEVSRDGRYITTADGSSV-KF---WDANHFGLVKGYNMPCNTESASLEPKLGNI 242
+ V +SR+ ++ D S+ KF W+ + + E A+ N
Sbjct: 95 DAAVKDLFLSREFIVVSQGDVISIFKFGNPWNK----ITEDIKFGGVCEFANGLLVYSNE 150
Query: 243 FIAGGEDMWVHVFDFHT-GEQIG----CNKGHHGPVHCVRFSPGGESYASGSEDGT-IRI 296
F G +HV T EQ+ K H PV VR + G+ A+ S+DGT IR+
Sbjct: 151 FNLGQ----IHVTRLQTDAEQVVGKGVLVKAHANPVKMVRLNRKGDMVATCSQDGTLIRV 206
Query: 297 WQTN 300
+QT+
Sbjct: 207 FQTD 210
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 36/197 (18%), Positives = 72/197 (36%), Gaps = 10/197 (5%)
Query: 115 HLLLTGGFEKILRIFDLNRP-DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173
+ L+ G + +R +++ P+ +G + V W + ++ D ++W
Sbjct: 55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTA-KMW 113
Query: 174 DARSGKIVQTLETKSPVTSAEVSRDGRYITTADGS---SVKFWDANHFGLVKGYNMPCNT 230
D S + +Q + +PV + + Y GS ++KFWD + +P
Sbjct: 114 DLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERC 173
Query: 231 ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES----YA 286
A + + + + V+ + E CV ++ +A
Sbjct: 174 YCADVIYPMA-VVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFA 232
Query: 287 SGSEDGTIRIWQTNPPN 303
GS +G + I NPPN
Sbjct: 233 LGSIEGRVAIHYINPPN 249
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
Query: 22 LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF----EGHKGAVWSCCL--DANALF 75
L +SP T G FL++ S + +R E D T + H G V C D + +F
Sbjct: 45 LSFSPPTLPGNFLIAGSWAND--VRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102
Query: 76 SASGSADFTAKLWDALTGDEKHSFEHKHIVRACAF--SEDTHLLLTGGFEKILRIFD 130
+AS D TAK+WD + +H V+ + + + ++TG ++K L+ +D
Sbjct: 103 TAS--CDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWD 157
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 107/271 (39%), Gaps = 42/271 (15%)
Query: 101 HKHIVRACAF-SEDTHLLLTGGFEKILRIFDLNR-PDAP----PREVGNSSGSIRTV--- 151
H V+ F ++ ++L +GG + I+D+N+ ++P P G S S+ V
Sbjct: 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISL 171
Query: 152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVS--------RDGRYIT 203
AW S + +S S +WD ++ K V L SP + + ++ +
Sbjct: 172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA 231
Query: 204 TADGS----SVKFWDANHFGLVKGYNMPCNTESASLEPKL---------GNIFIAGGEDM 250
TA GS S+ WD ++ N P T + + + ++ ++ G D
Sbjct: 232 TATGSDNDPSILIWD------LRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDN 285
Query: 251 WVHVFDFHTGEQIGCNKGHHGPVHCVRFSP-GGESYASGSEDGTIRIWQ----TNPPNHE 305
V +++ + EQ+ +F+P + +A S D I + TN + +
Sbjct: 286 TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQ 345
Query: 306 ENHSGTGNAQTGKL-KASTDEVTRKIEGFHI 335
E + ++T S +E K FH+
Sbjct: 346 ETETKQQESETDFWNNVSREESKEKPSVFHL 376
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLD 70
GH + +L + P P+ L+S SKD + L N +T + F EGH+ V S D
Sbjct: 112 GHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 71 ANALFSASGSADFTAKLW 88
S D + KLW
Sbjct: 170 LLGEKIMSCGMDHSLKLW 187
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLD 70
GH + +L + P P+ L+S SKD + L N +T + F EGH+ V S D
Sbjct: 113 GHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170
Query: 71 ANALFSASGSADFTAKLW 88
S D + KLW
Sbjct: 171 LLGEKIMSCGMDHSLKLW 188
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLD 70
GH + +L + P P+ L+S SKD + L N +T + F EGH+ V S D
Sbjct: 108 GHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 165
Query: 71 ANALFSASGSADFTAKLW 88
S D + KLW
Sbjct: 166 LLGEKIMSCGMDHSLKLW 183
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLD 70
GH + +L + P P+ L+S SKD + L N +T + F EGH+ V S D
Sbjct: 112 GHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 71 ANALFSASGSADFTAKLW 88
S D + KLW
Sbjct: 170 LLGEKIMSCGMDHSLKLW 187
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLD 70
GH + +L + P P+ L+S SKD + L N +T + F EGH+ V S D
Sbjct: 149 GHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 206
Query: 71 ANALFSASGSADFTAKLW 88
S D + KLW
Sbjct: 207 LLGEKIMSCGMDHSLKLW 224
>pdb|1UG9|A Chain A, Crystal Structure Of Glucodextranase From Arthrobacter
Globiformis I42
pdb|1ULV|A Chain A, Crystal Structure Of Glucodextranase Complexed With
Acarbose
Length = 1020
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS 145
+LW L+G E+ + + A + E H G+ +++D + P + E+G S+
Sbjct: 589 RLWPLLSG-ERGEYALANGQDALPYLETMHSAANAGYMIPEQVWDRDEPTSYGHELGRST 647
Query: 146 GSIRTVAWLHSDQTILSSCTDSG 168
GS ++W + L++ +G
Sbjct: 648 GSASPLSWAMAQYVRLAAGVKAG 670
>pdb|1QN0|A Chain A, Solution Structure Of Desulfovibrio Gigas Ferrocytochrome
C3, Nmr, 20 Structures
pdb|1QN1|A Chain A, Solution Structure Of Desulfovibrio Gigas Ferricytochrome
C3, Nmr, 15 Structures
Length = 112
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 243 FIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRI 296
FIAGGE VF+ T + + C+ HH PG + YA + DG I
Sbjct: 12 FIAGGEKNLTVVFNHSTHKDVKCDDCHH--------QPGDKQYAGCTTDGCHNI 57
>pdb|1WAD|A Chain A, Cytochrome C3 With 4 Heme Groups And One Calcium Ion
Length = 112
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 243 FIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRI 296
FIAGGE VF+ T + + C+ HH PG + YA + DG I
Sbjct: 12 FIAGGEKNLTVVFNHSTHKDVKCDDCHH--------DPGDKQYAGCTTDGCHNI 57
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 83/226 (36%), Gaps = 41/226 (18%)
Query: 117 LLTGGFEKILRIFDLNRPDAPPRE---------VGNSSGSIRTVAWLHSDQTILSSCTDS 167
LL+ + + ++D+N A P+E + + VAW +++ S D
Sbjct: 199 LLSASDDHTICLWDIN---ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 255
Query: 168 GGVRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYI--TTADGSSVKFWDANHFGLV 221
+ +WD R+ + T + V + +I T + +V WD + L
Sbjct: 256 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL- 314
Query: 222 KGYNMPCNTE---SASLEPKLGNIFIAGGEDMWVHVFDF-HTGEQIGCNKGHHGPVHCVR 277
K ++ + + P I + G D +HV+D GE+ GP +
Sbjct: 315 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL- 373
Query: 278 FSPGGES---------------YASGSEDGTIRIWQT--NPPNHEE 306
F GG + S SED +++WQ N N EE
Sbjct: 374 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEE 419
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 17/179 (9%)
Query: 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPML-------RNGETGDWIGTFEGHKG 62
L GH + L ++P +L+SAS D + L + D F GH
Sbjct: 177 LRLRGHQKEGYGLSWNPNL--NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 234
Query: 63 AVWSCC--LDANALFSASGSADFTAKLWDAL---TGDEKHSFE-HKHIVRACAFSEDTHL 116
V L +LF S + D +WD T H+ + H V +F+ +
Sbjct: 235 VVEDVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 293
Query: 117 LL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+L TG +K + ++DL + I V W ++TIL+S + +WD
Sbjct: 294 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 83/226 (36%), Gaps = 41/226 (18%)
Query: 117 LLTGGFEKILRIFDLNRPDAPPRE---------VGNSSGSIRTVAWLHSDQTILSSCTDS 167
LL+ + + ++D+N A P+E + + VAW +++ S D
Sbjct: 197 LLSASDDHTICLWDIN---ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253
Query: 168 GGVRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYI--TTADGSSVKFWDANHFGLV 221
+ +WD R+ + T + V + +I T + +V WD + L
Sbjct: 254 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL- 312
Query: 222 KGYNMPCNTE---SASLEPKLGNIFIAGGEDMWVHVFDF-HTGEQIGCNKGHHGPVHCVR 277
K ++ + + P I + G D +HV+D GE+ GP +
Sbjct: 313 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL- 371
Query: 278 FSPGGES---------------YASGSEDGTIRIWQT--NPPNHEE 306
F GG + S SED +++WQ N N EE
Sbjct: 372 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEE 417
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 17/179 (9%)
Query: 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPML-------RNGETGDWIGTFEGHKG 62
L GH + L ++P +G+ L+SAS D + L + D F GH
Sbjct: 175 LRLRGHQKEGYGLSWNP-NLNGY-LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 232
Query: 63 AVWSCC--LDANALFSASGSADFTAKLWDAL---TGDEKHSFE-HKHIVRACAFSEDTHL 116
V L +LF S + D +WD T H+ + H V +F+ +
Sbjct: 233 VVEDVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 291
Query: 117 LL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+L TG +K + ++DL + I V W ++TIL+S + +WD
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 48/226 (21%), Positives = 83/226 (36%), Gaps = 41/226 (18%)
Query: 117 LLTGGFEKILRIFDLNRPDAPPRE---------VGNSSGSIRTVAWLHSDQTILSSCTDS 167
LL+ + + ++D+N A P+E + + VAW +++ S D
Sbjct: 201 LLSASDDHTICLWDIN---ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 257
Query: 168 GGVRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYI--TTADGSSVKFWDANHFGLV 221
+ +WD R+ + T + V + +I T + +V WD + L
Sbjct: 258 QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL- 316
Query: 222 KGYNMPCNTE---SASLEPKLGNIFIAGGEDMWVHVFDF-HTGEQIGCNKGHHGPVHCVR 277
K ++ + + P I + G D +HV+D GE+ GP +
Sbjct: 317 KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL- 375
Query: 278 FSPGGES---------------YASGSEDGTIRIWQT--NPPNHEE 306
F GG + S SED +++WQ N N EE
Sbjct: 376 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEE 421
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 17/179 (9%)
Query: 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPML-------RNGETGDWIGTFEGHKG 62
L GH + L ++P +L+SAS D + L + D F GH
Sbjct: 179 LRLRGHQKEGYGLSWNPNL--NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 236
Query: 63 AVWSCC--LDANALFSASGSADFTAKLWDAL---TGDEKHSFE-HKHIVRACAFSEDTHL 116
V L +LF S + D +WD T H+ + H V +F+ +
Sbjct: 237 VVEDVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 295
Query: 117 LL-TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+L TG +K + ++DL + I V W ++TIL+S + +WD
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 15/155 (9%)
Query: 34 LVSASKDSSPML-------RNGETGDWIGTFEGHKGAV--WSCCLDANALFSASGSADFT 84
L+SAS D + L + G+ D F GH V S L +LF S + D
Sbjct: 193 LLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLF-GSVADDQK 251
Query: 85 AKLWDAL---TGDEKHSFE-HKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPR 139
+WD T HS + H V +F+ + +L TG +K + ++DL
Sbjct: 252 LMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 311
Query: 140 EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+ I V W ++TIL+S + +WD
Sbjct: 312 SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 185 ETKSPVTSAEVSRDGRYITTADGSSVKFWDAN 216
E S ++ + S GRY+ T D SVK WD N
Sbjct: 283 EIISSISDVKFSHSGRYMMTRDYLSVKVWDLN 314
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 267 KGHHGPVHCVRFSPGGESYASGSEDGT-IRIWQT-NPPNHEENHSGTGNAQTGKLKASTD 324
K H P+ VR + + A+ S+DGT IR+++T + E G A +K STD
Sbjct: 192 KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTD 251
>pdb|3C75|H Chain H, Paracoccus Versutus Methylamine Dehydrogenase In Complex
With Amicyanin
pdb|3C75|J Chain J, Paracoccus Versutus Methylamine Dehydrogenase In Complex
With Amicyanin
Length = 426
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 44 MLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH 101
++ N ETG+ I E GH+ + DA L A + T ++DA TG+E S +
Sbjct: 353 VVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVDQ 411
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 86/229 (37%), Gaps = 34/229 (14%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-RPDAPPREVGNSSGSIRTVAWLHSD-Q 158
H ++ L T +K ++IF++ + G + V W H
Sbjct: 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 159 TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDG---------RYITTADG-- 207
TIL+SC+ G V +W +G+ Q V SA V+ + ++DG
Sbjct: 70 TILASCSYDGKVLIWKEENGRWSQI--AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 127
Query: 208 SSVKF----------WDANHFGLVKGYNMPCNTESASLE--PKLGNIFIAGGEDMWVHVF 255
S V+F DA+ G+ P E K F+ GG D V ++
Sbjct: 128 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 187
Query: 256 DFHTGEQI----GCNKGHHGPVHCVRFSPGG--ESY-ASGSEDGTIRIW 297
+++ Q +GH V V +SP SY AS S+D T IW
Sbjct: 188 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 86/229 (37%), Gaps = 34/229 (14%)
Query: 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-RPDAPPREVGNSSGSIRTVAWLHSD-Q 158
H ++ L T +K ++IF++ + G + V W H
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 159 TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDG---------RYITTADG-- 207
TIL+SC+ G V +W +G+ Q V SA V+ + ++DG
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQI--AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV 125
Query: 208 SSVKF----------WDANHFGLVKGYNMPCNTESASLE--PKLGNIFIAGGEDMWVHVF 255
S V+F DA+ G+ P E K F+ GG D V ++
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Query: 256 DFHTGEQI----GCNKGHHGPVHCVRFSPGG--ESY-ASGSEDGTIRIW 297
+++ Q +GH V V +SP SY AS S+D T IW
Sbjct: 186 KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 72/183 (39%), Gaps = 33/183 (18%)
Query: 146 GSIRTVAWLHSD-QTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSR------- 197
G + V W H TIL+SC+ G V +W +G+ Q V SA V+
Sbjct: 54 GPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQI--AVHAVHSASVNSVQWAPHE 111
Query: 198 --DGRYITTADG--SSVKF----------WDANHFGLVKGYNMPCNTESASLE--PKLGN 241
+ ++DG S V+F DA+ G+ P E K
Sbjct: 112 YGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR 171
Query: 242 IFIAGGEDMWVHVFDFHTGEQI----GCNKGHHGPVHCVRFSPGG--ESY-ASGSEDGTI 294
F+ GG D V ++ +++ Q +GH V V +SP SY AS S+D T
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTC 231
Query: 295 RIW 297
IW
Sbjct: 232 IIW 234
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 72/183 (39%), Gaps = 33/183 (18%)
Query: 146 GSIRTVAWLHSD-QTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDG----- 199
G + V W H TIL+SC+ G V +W +G+ Q V SA V+
Sbjct: 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQI--AVHAVHSASVNSVQWAPHE 111
Query: 200 ----RYITTADG--SSVKF----------WDANHFGLVKGYNMPCNTESASLE--PKLGN 241
+ ++DG S V+F DA+ G+ P E K
Sbjct: 112 YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR 171
Query: 242 IFIAGGEDMWVHVFDFHTGEQI----GCNKGHHGPVHCVRFSPGG--ESY-ASGSEDGTI 294
F+ GG D V ++ +++ Q +GH V V +SP SY AS S+D T
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
Query: 295 RIW 297
IW
Sbjct: 232 IIW 234
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 15/155 (9%)
Query: 34 LVSASKDSSPML-------RNGETGDWIGTFEGHKGAVWSCC--LDANALFSASGSADFT 84
L+SAS D + L + G+ D F GH V L +LF S + D
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 85 AKLWDA---LTGDEKHSFE-HKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPR 139
+WD T H + H V +F+ + +L TG +K + ++DL
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 140 EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+ I V W ++TIL+S + +WD
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 62/179 (34%), Gaps = 27/179 (15%)
Query: 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK------IVQTLETKSPVTSAEVSRD 198
S + VAW +++ S D + +WD RS +V + S +
Sbjct: 229 SAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE 288
Query: 199 GRYITTADGSSVKFWDANHFGLVKGYNMPCNTE---SASLEPKLGNIFIAGGEDMWVHVF 255
T + +V WD + L K + + + P I + G D ++V+
Sbjct: 289 FILATGSADKTVALWDLRNLKL-KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 256 DF-HTGEQIGCNKGHHGPVHCVRFSPGGES---------------YASGSEDGTIRIWQ 298
D GE+ GP + F GG + S SED ++IWQ
Sbjct: 348 DLSKIGEEQSAEDAEDGPPELL-FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ 405
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 15/155 (9%)
Query: 34 LVSASKDSSPML-------RNGETGDWIGTFEGHKGAVWSCC--LDANALFSASGSADFT 84
L+SAS D + L + G+ D F GH V L +LF S + D
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 85 AKLWDA---LTGDEKHSFE-HKHIVRACAFSEDTHLLL-TGGFEKILRIFDLNRPDAPPR 139
+WD T H + H V +F+ + +L TG +K + ++DL
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH 313
Query: 140 EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
+ I V W ++TIL+S + +WD
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 61/179 (34%), Gaps = 27/179 (15%)
Query: 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK------IVQTLETKSPVTSAEVSRD 198
S + VAW +++ S D + +WD RS +V + S +
Sbjct: 229 SAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSE 288
Query: 199 GRYITTADGSSVKFWDANHFGLVKGYNMPCNTE---SASLEPKLGNIFIAGGEDMWVHVF 255
T + +V WD + L K + + + P I + G D ++V+
Sbjct: 289 FILATGSADKTVALWDLRNLKL-KLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 256 DF-HTGEQIGCNKGHHGPVHCVRFSPGGES---------------YASGSEDGTIRIWQ 298
D GE+ GP + F GG + S SED +IWQ
Sbjct: 348 DLSKIGEEQSAEDAEDGPPELL-FIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQ 405
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 72/183 (39%), Gaps = 33/183 (18%)
Query: 146 GSIRTVAWLHSD-QTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSR------- 197
G + V W H TIL+SC+ G V +W +G+ Q V SA V+
Sbjct: 54 GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI--AVHAVHSASVNSVQWAPHE 111
Query: 198 --DGRYITTADG--SSVKF----------WDANHFGLVKGYNMPCNTESASLE--PKLGN 241
+ ++DG S V+F DA+ G+ P E K
Sbjct: 112 YGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR 171
Query: 242 IFIAGGEDMWVHVFDFHTGEQI----GCNKGHHGPVHCVRFSPGG--ESY-ASGSEDGTI 294
F+ GG D V ++ +++ Q +GH V V +SP SY AS S+D T
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231
Query: 295 RIW 297
IW
Sbjct: 232 IIW 234
>pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Oxidizing Conditions. A Fully Occupied
Dinuclear Iron Cluster.
pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Reducing Conditions. A Fully Occupied
Dinuclear Iron Cluster And Bound Acetate.
pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse
Length = 390
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 38 SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL--WDALTGDE 95
S + P+LR + E H +W A A F + D + + W+AL DE
Sbjct: 67 SVEDEPLLRENPRRFVVFPIEYHD--IWQMYKKAEASFWTAEEVDLSKDIQHWEALKPDE 124
Query: 96 KHSFEH 101
+H H
Sbjct: 125 RHFISH 130
>pdb|1NIR|A Chain A, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NIR|B Chain B, Oxydized Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1BL9|A Chain A, Conformational Changes Occurring Upon Reduction In Nitrite
Reductase From Pseudomonas Aeruginosa
pdb|1BL9|B Chain B, Conformational Changes Occurring Upon Reduction In Nitrite
Reductase From Pseudomonas Aeruginosa
pdb|1NNO|A Chain A, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1NNO|B Chain B, Conformational Changes Occurring Upon No Binding In
Nitrite Reductase From Pseudomonas Aeruginosa
pdb|1N15|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N15|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N50|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|A Chain A, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1N90|B Chain B, Following The C Heme Reduction In Nitrite Reductase From
Pseudomonas Aeruginosa
pdb|1GJQ|A Chain A, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
pdb|1GJQ|B Chain B, Pseudomonas Aeruginosa Cd1 Nitrite Reductase Reduced
Cyanide Complex
Length = 543
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 163 SCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI 202
+ D+G + L D S KIV+ ++T V + +S GRY+
Sbjct: 154 TLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYL 193
>pdb|1HZU|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite Reductase
Of Pseudomonas Aeruginosa
Length = 543
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 163 SCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI 202
+ D+G + L D S KIV+ ++T V + +S GRY+
Sbjct: 154 TLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYL 193
>pdb|1HZV|A Chain A, Domain Swing Upon His To Ala Mutation In Nitrite Reductase
Of Pseudomonas Aeruginosa
Length = 543
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 163 SCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI 202
+ D+G + L D S KIV+ ++T V + +S GRY+
Sbjct: 154 TLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYL 193
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTA 205
VAW + Q +L S + +WD +G V TL + S + SRDG I T+
Sbjct: 137 VAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174
H++ TGG + +L I+D+ + P + + V + S+ L +C++ G + WD
Sbjct: 250 HVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
Query: 175 ARS 177
A +
Sbjct: 310 AST 312
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTA 205
VAW + Q +L S + +WD +G V TL + S + SRDG I T+
Sbjct: 137 VAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTS 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,164,545
Number of Sequences: 62578
Number of extensions: 551055
Number of successful extensions: 2124
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 1201
Number of HSP's gapped (non-prelim): 427
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)