Query 018784
Match_columns 350
No_of_seqs 229 out of 2514
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 04:00:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0278 Serine/threonine kinas 100.0 5E-62 1.1E-66 389.5 21.2 331 4-342 2-333 (334)
2 KOG0271 Notchless-like WD40 re 100.0 5.7E-50 1.2E-54 337.5 25.8 308 13-342 112-466 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-48 5.2E-53 331.4 24.4 280 14-298 173-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 1.5E-45 3.2E-50 310.8 26.3 282 11-298 152-479 (480)
5 KOG0279 G protein beta subunit 100.0 4.9E-42 1.1E-46 278.8 30.0 284 12-300 11-313 (315)
6 KOG0286 G-protein beta subunit 100.0 1.3E-41 2.9E-46 277.9 31.5 283 10-298 49-343 (343)
7 KOG0315 G-protein beta subunit 100.0 8.3E-40 1.8E-44 261.8 30.6 278 31-312 10-300 (311)
8 KOG0293 WD40 repeat-containing 100.0 2.6E-40 5.7E-45 281.6 24.7 286 12-302 220-515 (519)
9 KOG0284 Polyadenylation factor 100.0 1.3E-40 2.8E-45 283.0 19.7 279 17-300 97-380 (464)
10 KOG0279 G protein beta subunit 100.0 5.9E-39 1.3E-43 260.9 27.5 250 4-258 50-313 (315)
11 KOG0643 Translation initiation 100.0 2.9E-39 6.2E-44 261.2 24.8 289 8-300 2-317 (327)
12 KOG0285 Pleiotropic regulator 100.0 4.5E-38 9.7E-43 263.6 27.3 292 11-308 146-447 (460)
13 KOG0272 U4/U6 small nuclear ri 100.0 2.2E-39 4.8E-44 276.6 18.5 243 10-256 211-458 (459)
14 KOG0291 WD40-repeat-containing 100.0 2.7E-37 6E-42 280.5 32.9 335 6-345 131-573 (893)
15 KOG0296 Angio-associated migra 100.0 1.9E-37 4E-42 260.5 28.9 287 7-300 54-398 (399)
16 KOG0282 mRNA splicing factor [ 100.0 3.2E-39 6.9E-44 280.0 18.7 289 5-298 199-503 (503)
17 KOG0295 WD40 repeat-containing 100.0 3.4E-38 7.4E-43 264.8 23.7 282 12-299 104-405 (406)
18 KOG0265 U5 snRNP-specific prot 100.0 5.1E-37 1.1E-41 251.9 26.7 286 6-298 36-336 (338)
19 KOG0266 WD40 repeat-containing 100.0 8.2E-37 1.8E-41 284.0 31.8 282 14-300 157-454 (456)
20 cd00200 WD40 WD40 domain, foun 100.0 1.1E-35 2.3E-40 259.4 35.2 281 12-298 5-289 (289)
21 KOG0318 WD40 repeat stress pro 100.0 2.8E-35 6.1E-40 257.8 36.8 306 13-340 187-543 (603)
22 KOG0281 Beta-TrCP (transducin 100.0 4E-38 8.8E-43 263.1 17.8 277 14-309 195-486 (499)
23 KOG0645 WD40 repeat protein [G 100.0 1E-35 2.2E-40 241.1 31.0 280 11-299 9-310 (312)
24 KOG0286 G-protein beta subunit 100.0 1.3E-35 2.9E-40 242.8 31.5 270 54-341 48-329 (343)
25 KOG0263 Transcription initiati 100.0 1.1E-36 2.4E-41 278.5 26.7 253 7-305 365-654 (707)
26 KOG0316 Conserved WD40 repeat- 100.0 9.3E-36 2E-40 236.9 26.6 278 12-298 13-297 (307)
27 KOG0319 WD40-repeat-containing 100.0 1.1E-35 2.4E-40 269.6 30.3 294 14-311 103-588 (775)
28 KOG0273 Beta-transducin family 100.0 1.2E-35 2.6E-40 257.0 26.9 291 14-310 176-492 (524)
29 KOG0313 Microtubule binding pr 100.0 7.5E-35 1.6E-39 246.0 26.8 283 9-300 98-418 (423)
30 KOG0273 Beta-transducin family 100.0 2.3E-34 5.1E-39 249.0 30.3 275 17-300 236-523 (524)
31 PLN00181 protein SPA1-RELATED; 100.0 9.3E-34 2E-38 281.7 38.6 280 13-299 480-792 (793)
32 KOG0263 Transcription initiati 100.0 5.3E-35 1.2E-39 267.4 23.0 202 12-218 447-651 (707)
33 KOG0319 WD40-repeat-containing 100.0 3.8E-34 8.2E-39 259.7 28.1 283 13-299 320-618 (775)
34 KOG0315 G-protein beta subunit 100.0 1.5E-33 3.3E-38 225.9 27.2 256 18-279 42-309 (311)
35 KOG0268 Sof1-like rRNA process 100.0 2.1E-35 4.6E-40 248.0 15.0 296 3-309 51-354 (433)
36 KOG0276 Vesicle coat complex C 100.0 1.4E-33 2.9E-38 251.8 25.5 281 13-296 10-295 (794)
37 KOG0295 WD40 repeat-containing 100.0 4.9E-34 1.1E-38 239.9 21.2 258 53-311 100-375 (406)
38 KOG0310 Conserved WD40 repeat- 100.0 4.2E-33 9E-38 242.4 26.5 288 6-299 17-308 (487)
39 KOG0640 mRNA cleavage stimulat 100.0 4.3E-33 9.4E-38 229.9 21.8 284 12-300 108-426 (430)
40 KOG0275 Conserved WD40 repeat- 100.0 1.6E-33 3.6E-38 233.7 17.5 278 14-298 211-507 (508)
41 KOG0291 WD40-repeat-containing 100.0 1.2E-31 2.6E-36 244.0 30.9 285 16-305 307-617 (893)
42 KOG0288 WD40 repeat protein Ti 100.0 2.1E-33 4.6E-38 239.5 18.4 278 12-298 171-459 (459)
43 KOG0274 Cdc4 and related F-box 100.0 5.5E-32 1.2E-36 251.7 29.0 277 15-306 207-488 (537)
44 KOG0285 Pleiotropic regulator 100.0 3.1E-32 6.7E-37 228.7 24.2 247 52-303 142-392 (460)
45 PLN00181 protein SPA1-RELATED; 100.0 5.3E-31 1.2E-35 262.0 35.5 295 40-340 457-776 (793)
46 KOG0266 WD40 repeat-containing 100.0 4E-31 8.7E-36 246.0 31.2 256 54-311 151-420 (456)
47 KOG1446 Histone H3 (Lys4) meth 100.0 2.7E-30 5.8E-35 214.2 31.7 284 5-298 3-301 (311)
48 KOG0318 WD40 repeat stress pro 100.0 3.4E-30 7.4E-35 226.0 33.9 311 12-341 143-501 (603)
49 KOG0306 WD40-repeat-containing 100.0 4.6E-31 1E-35 240.1 29.2 316 14-341 63-522 (888)
50 KOG0265 U5 snRNP-specific prot 100.0 1.7E-31 3.6E-36 219.6 23.6 258 53-311 39-307 (338)
51 KOG0283 WD40 repeat-containing 100.0 6.5E-32 1.4E-36 249.1 23.2 238 14-259 265-577 (712)
52 cd00200 WD40 WD40 domain, foun 100.0 5.5E-30 1.2E-34 223.3 34.2 269 54-340 2-274 (289)
53 KOG1407 WD40 repeat protein [F 100.0 2.4E-30 5.1E-35 209.0 27.3 272 12-291 16-293 (313)
54 KOG0316 Conserved WD40 repeat- 100.0 6.7E-31 1.5E-35 209.2 23.7 250 52-306 8-263 (307)
55 KOG0300 WD40 repeat-containing 100.0 2.8E-31 6.1E-36 219.9 20.4 286 12-303 144-479 (481)
56 KOG0277 Peroxisomal targeting 100.0 2.2E-31 4.7E-36 214.2 19.1 241 15-298 59-307 (311)
57 KOG0284 Polyadenylation factor 100.0 6.2E-32 1.3E-36 230.3 16.7 238 61-300 96-337 (464)
58 KOG0282 mRNA splicing factor [ 100.0 6.3E-32 1.4E-36 234.7 15.9 258 51-311 204-473 (503)
59 KOG0281 Beta-TrCP (transducin 100.0 5.2E-32 1.1E-36 226.6 14.3 232 60-305 196-433 (499)
60 PTZ00421 coronin; Provisional 100.0 2.1E-29 4.5E-34 234.1 32.5 214 9-225 68-299 (493)
61 KOG0301 Phospholipase A2-activ 100.0 4.6E-30 1E-34 231.8 27.0 279 5-300 3-288 (745)
62 KOG0296 Angio-associated migra 100.0 4.7E-30 1E-34 216.0 25.1 270 53-341 56-382 (399)
63 KOG0645 WD40 repeat protein [G 100.0 9.5E-30 2.1E-34 206.5 25.7 237 14-258 59-311 (312)
64 KOG0306 WD40-repeat-containing 100.0 1.3E-29 2.8E-34 230.7 28.7 283 10-300 367-664 (888)
65 KOG0274 Cdc4 and related F-box 100.0 5.3E-30 1.2E-34 238.5 26.2 255 12-278 245-503 (537)
66 KOG0292 Vesicle coat complex C 100.0 1.8E-29 4E-34 233.2 29.1 284 11-299 46-396 (1202)
67 KOG0283 WD40 repeat-containing 100.0 4.4E-30 9.5E-35 237.1 24.9 246 56-304 261-580 (712)
68 KOG0294 WD40 repeat-containing 100.0 1.3E-29 2.8E-34 209.7 25.0 244 53-302 35-283 (362)
69 KOG0305 Anaphase promoting com 100.0 1E-29 2.3E-34 228.8 26.6 247 11-302 212-463 (484)
70 KOG0289 mRNA splicing factor [ 100.0 1.9E-29 4.2E-34 216.6 25.7 277 18-299 221-505 (506)
71 PTZ00421 coronin; Provisional 100.0 3.1E-28 6.8E-33 226.2 32.3 263 15-282 19-315 (493)
72 KOG0292 Vesicle coat complex C 100.0 4.4E-29 9.6E-34 230.7 25.5 278 16-300 9-321 (1202)
73 PTZ00420 coronin; Provisional 100.0 4.9E-28 1.1E-32 226.1 30.8 243 36-282 49-318 (568)
74 KOG0647 mRNA export protein (c 100.0 1.9E-28 4E-33 201.8 24.6 268 16-291 27-315 (347)
75 KOG1036 Mitotic spindle checkp 100.0 3E-28 6.5E-33 201.2 25.3 271 4-290 6-294 (323)
76 KOG0641 WD40 repeat protein [G 100.0 5.6E-27 1.2E-31 186.0 31.5 280 14-300 30-349 (350)
77 KOG0276 Vesicle coat complex C 100.0 1.1E-28 2.4E-33 220.6 24.1 249 55-305 7-262 (794)
78 KOG0299 U3 snoRNP-associated p 100.0 4.2E-28 9.2E-33 209.8 26.0 283 10-299 136-455 (479)
79 KOG0294 WD40 repeat-containing 100.0 4E-28 8.7E-33 200.9 24.7 240 12-260 39-283 (362)
80 KOG0293 WD40 repeat-containing 100.0 1.5E-28 3.3E-33 210.0 22.3 278 54-334 217-513 (519)
81 KOG0277 Peroxisomal targeting 100.0 2.3E-28 5E-33 196.8 20.9 241 19-301 11-266 (311)
82 KOG0973 Histone transcription 100.0 7.9E-28 1.7E-32 227.6 27.1 282 15-301 12-356 (942)
83 PTZ00420 coronin; Provisional 100.0 1.2E-26 2.5E-31 216.9 33.6 225 78-302 49-295 (568)
84 KOG0313 Microtubule binding pr 100.0 2.7E-28 5.9E-33 206.4 19.3 202 10-215 187-417 (423)
85 KOG0647 mRNA export protein (c 100.0 3E-27 6.6E-32 194.7 23.5 245 60-308 26-289 (347)
86 TIGR03866 PQQ_ABC_repeats PQQ- 100.0 8.8E-26 1.9E-30 199.8 34.0 267 32-304 2-283 (300)
87 KOG0308 Conserved WD40 repeat- 100.0 8E-28 1.7E-32 216.0 19.9 294 4-300 4-327 (735)
88 KOG0310 Conserved WD40 repeat- 100.0 3.9E-27 8.4E-32 205.3 23.2 234 16-256 68-307 (487)
89 KOG0288 WD40 repeat protein Ti 100.0 2.8E-28 6.2E-33 208.3 15.4 272 51-340 165-444 (459)
90 KOG0289 mRNA splicing factor [ 100.0 1.6E-26 3.4E-31 198.8 24.4 240 12-257 257-505 (506)
91 KOG4283 Transcription-coupled 100.0 3.9E-26 8.5E-31 187.6 25.4 284 13-299 40-364 (397)
92 KOG0772 Uncharacterized conser 100.0 1.7E-26 3.7E-31 202.4 24.6 283 12-299 163-486 (641)
93 KOG1036 Mitotic spindle checkp 100.0 3E-26 6.4E-31 189.5 24.4 244 61-310 13-272 (323)
94 KOG1446 Histone H3 (Lys4) meth 100.0 2.7E-25 5.9E-30 184.6 30.2 252 52-307 5-269 (311)
95 KOG0264 Nucleosome remodeling 100.0 9.3E-27 2E-31 201.4 22.2 257 14-300 122-404 (422)
96 KOG0275 Conserved WD40 repeat- 100.0 3.3E-27 7.1E-32 196.4 17.7 245 60-306 212-473 (508)
97 KOG0268 Sof1-like rRNA process 100.0 9.2E-28 2E-32 202.2 14.1 245 52-305 57-307 (433)
98 KOG0308 Conserved WD40 repeat- 99.9 1.6E-26 3.4E-31 207.7 19.6 232 71-302 35-287 (735)
99 KOG1407 WD40 repeat protein [F 99.9 7.9E-26 1.7E-30 182.9 21.2 246 55-304 14-265 (313)
100 KOG0278 Serine/threonine kinas 99.9 5.2E-27 1.1E-31 188.7 14.1 242 12-262 55-301 (334)
101 KOG1408 WD40 repeat protein [F 99.9 7.5E-26 1.6E-30 205.3 22.0 266 33-300 394-713 (1080)
102 KOG1332 Vesicle coat complex C 99.9 7.1E-26 1.5E-30 181.5 17.4 247 13-299 8-285 (299)
103 KOG0973 Histone transcription 99.9 3.1E-25 6.6E-30 210.2 24.3 265 60-340 12-338 (942)
104 KOG1273 WD40 repeat protein [G 99.9 5.7E-25 1.2E-29 182.3 22.7 316 19-344 26-361 (405)
105 KOG0269 WD40 repeat-containing 99.9 3.8E-26 8.2E-31 208.9 17.1 235 21-299 92-339 (839)
106 KOG0301 Phospholipase A2-activ 99.9 6.1E-25 1.3E-29 198.9 23.4 240 4-258 44-288 (745)
107 KOG0300 WD40 repeat-containing 99.9 7E-25 1.5E-29 182.1 21.3 249 52-303 139-431 (481)
108 KOG0299 U3 snoRNP-associated p 99.9 6E-25 1.3E-29 190.4 21.3 242 8-256 192-454 (479)
109 KOG0640 mRNA cleavage stimulat 99.9 4.5E-25 9.7E-30 182.6 18.5 252 2-257 155-425 (430)
110 KOG2445 Nuclear pore complex c 99.9 1.3E-23 2.9E-28 173.7 25.9 266 12-303 9-321 (361)
111 KOG1063 RNA polymerase II elon 99.9 2.4E-24 5.3E-29 194.9 22.3 297 5-302 180-650 (764)
112 KOG0321 WD40 repeat-containing 99.9 5.7E-24 1.2E-28 191.0 24.3 280 21-301 54-392 (720)
113 KOG0641 WD40 repeat protein [G 99.9 5.8E-23 1.2E-27 163.3 27.3 247 52-301 24-304 (350)
114 KOG1539 WD repeat protein [Gen 99.9 1.8E-23 3.8E-28 192.9 27.9 291 11-305 197-611 (910)
115 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.2E-22 2.6E-27 179.7 31.8 259 13-280 28-300 (300)
116 KOG0267 Microtubule severing p 99.9 6.6E-26 1.4E-30 205.9 10.9 234 13-292 25-260 (825)
117 KOG4328 WD40 protein [Function 99.9 1.4E-23 3E-28 181.9 24.0 287 11-299 181-494 (498)
118 KOG0772 Uncharacterized conser 99.9 3E-24 6.5E-29 188.5 19.1 251 51-301 157-446 (641)
119 KOG0643 Translation initiation 99.9 2.5E-23 5.3E-28 169.0 22.3 206 98-305 6-225 (327)
120 KOG0646 WD40 repeat protein [G 99.9 4E-23 8.8E-28 179.5 23.7 265 33-301 9-308 (476)
121 KOG0639 Transducin-like enhanc 99.9 1E-23 2.3E-28 184.6 19.4 277 14-299 417-703 (705)
122 KOG2096 WD40 repeat protein [G 99.9 1.4E-22 3E-27 168.5 24.7 275 12-298 82-400 (420)
123 KOG1538 Uncharacterized conser 99.9 5.3E-23 1.2E-27 185.7 24.0 270 18-300 14-293 (1081)
124 KOG0270 WD40 repeat-containing 99.9 1.6E-23 3.4E-28 180.9 19.7 232 31-263 192-454 (463)
125 KOG1539 WD repeat protein [Gen 99.9 2.5E-22 5.4E-27 185.4 28.6 286 7-298 234-646 (910)
126 KOG0264 Nucleosome remodeling 99.9 2.5E-23 5.4E-28 180.3 19.7 206 9-216 170-404 (422)
127 KOG1408 WD40 repeat protein [F 99.9 2.1E-22 4.6E-27 183.1 26.3 306 19-330 327-701 (1080)
128 KOG2055 WD40 repeat protein [G 99.9 2.8E-22 6E-27 174.0 25.1 278 16-300 213-512 (514)
129 KOG1332 Vesicle coat complex C 99.9 2.2E-23 4.7E-28 167.3 16.7 204 11-216 51-286 (299)
130 KOG1274 WD40 repeat protein [G 99.9 7E-22 1.5E-26 184.3 28.5 272 14-297 11-297 (933)
131 KOG0267 Microtubule severing p 99.9 2.1E-24 4.5E-29 196.3 10.5 194 12-210 66-261 (825)
132 KOG0650 WD40 repeat nucleolar 99.9 5.1E-22 1.1E-26 177.4 25.2 281 9-298 393-733 (733)
133 KOG0642 Cell-cycle nuclear pro 99.9 2.4E-23 5.2E-28 184.8 16.6 258 12-305 290-566 (577)
134 KOG2919 Guanine nucleotide-bin 99.9 5E-22 1.1E-26 165.5 22.8 263 27-291 57-361 (406)
135 KOG2048 WD40 repeat protein [G 99.9 2.5E-21 5.5E-26 175.2 29.2 278 16-300 25-319 (691)
136 KOG2096 WD40 repeat protein [G 99.9 5.6E-22 1.2E-26 164.9 21.7 212 54-301 79-309 (420)
137 KOG1188 WD40 repeat protein [G 99.9 2.6E-22 5.6E-27 168.3 19.6 268 32-299 41-345 (376)
138 KOG0646 WD40 repeat protein [G 99.9 5.5E-22 1.2E-26 172.5 22.0 231 17-283 82-332 (476)
139 KOG0303 Actin-binding protein 99.9 2.5E-22 5.3E-27 171.3 18.7 207 8-219 74-297 (472)
140 KOG0305 Anaphase promoting com 99.9 1.9E-21 4.1E-26 175.6 25.5 250 31-340 188-444 (484)
141 KOG0639 Transducin-like enhanc 99.9 1.6E-22 3.5E-27 177.2 17.6 243 59-305 417-668 (705)
142 KOG2106 Uncharacterized conser 99.9 3.5E-20 7.6E-25 162.7 31.6 274 16-298 200-519 (626)
143 KOG4227 WD40 repeat protein [G 99.9 3.5E-21 7.5E-26 164.3 23.0 281 13-298 53-385 (609)
144 KOG1445 Tumor-specific antigen 99.9 1.9E-21 4.1E-26 174.9 22.4 124 7-133 71-201 (1012)
145 KOG1274 WD40 repeat protein [G 99.9 8E-21 1.7E-25 177.3 26.8 239 58-301 10-263 (933)
146 KOG4378 Nuclear protein COP1 [ 99.9 5.4E-22 1.2E-26 173.7 17.8 197 18-217 81-281 (673)
147 KOG0650 WD40 repeat nucleolar 99.9 1.4E-21 3E-26 174.6 20.1 246 52-298 391-678 (733)
148 KOG0307 Vesicle coat complex C 99.9 2.4E-22 5.3E-27 191.5 15.9 241 63-303 66-330 (1049)
149 KOG0322 G-protein beta subunit 99.9 1E-21 2.3E-26 159.4 17.1 283 9-299 7-322 (323)
150 KOG0269 WD40 repeat-containing 99.9 3E-22 6.5E-27 183.6 15.3 185 11-197 128-319 (839)
151 KOG0302 Ribosome Assembly prot 99.9 2E-21 4.3E-26 164.9 18.4 171 5-177 199-379 (440)
152 KOG2106 Uncharacterized conser 99.9 2.5E-19 5.3E-24 157.4 30.7 281 14-304 152-481 (626)
153 KOG1034 Transcriptional repres 99.9 2.1E-21 4.5E-26 162.2 16.8 257 15-299 88-382 (385)
154 KOG0302 Ribosome Assembly prot 99.9 1.9E-20 4.1E-25 159.0 21.4 202 14-217 149-379 (440)
155 KOG4283 Transcription-coupled 99.9 1.1E-20 2.5E-25 155.7 19.4 215 58-305 40-281 (397)
156 KOG0270 WD40 repeat-containing 99.9 3.2E-21 6.9E-26 166.8 16.4 208 12-221 239-454 (463)
157 COG2319 FOG: WD40 repeat [Gene 99.9 5.1E-18 1.1E-22 155.7 36.7 284 11-301 150-443 (466)
158 COG2319 FOG: WD40 repeat [Gene 99.9 8.1E-18 1.7E-22 154.4 36.6 287 12-303 61-362 (466)
159 KOG4378 Nuclear protein COP1 [ 99.9 6.7E-20 1.4E-24 160.7 20.7 265 37-304 8-284 (673)
160 KOG1063 RNA polymerase II elon 99.9 1.7E-19 3.7E-24 163.8 23.6 306 21-340 150-631 (764)
161 KOG0644 Uncharacterized conser 99.9 5.9E-21 1.3E-25 176.4 13.1 276 12-300 186-468 (1113)
162 KOG0321 WD40 repeat-containing 99.9 9.7E-20 2.1E-24 164.0 20.3 280 13-298 97-443 (720)
163 KOG1009 Chromatin assembly com 99.8 3E-19 6.4E-24 153.1 21.5 289 12-305 8-377 (434)
164 KOG1517 Guanine nucleotide bin 99.8 9E-19 1.9E-23 165.8 24.2 282 16-302 1064-1383(1387)
165 KOG2055 WD40 repeat protein [G 99.8 1.1E-18 2.4E-23 151.8 22.9 238 62-300 214-467 (514)
166 KOG2048 WD40 repeat protein [G 99.8 8E-18 1.7E-22 152.8 29.2 240 11-259 63-320 (691)
167 KOG1273 WD40 repeat protein [G 99.8 9.5E-19 2.1E-23 145.6 21.1 245 64-311 26-291 (405)
168 KOG1007 WD repeat protein TSSC 99.8 8.2E-19 1.8E-23 144.4 20.4 274 10-300 57-361 (370)
169 KOG1310 WD40 repeat protein [G 99.8 2.1E-18 4.5E-23 153.1 23.5 210 4-216 38-303 (758)
170 PRK11028 6-phosphogluconolacto 99.8 2.6E-17 5.7E-22 148.0 30.9 266 34-301 5-305 (330)
171 KOG2445 Nuclear pore complex c 99.8 4.7E-18 1E-22 141.1 22.2 217 58-301 10-257 (361)
172 KOG0649 WD40 repeat protein [G 99.8 4E-17 8.7E-22 131.5 26.1 262 27-297 18-313 (325)
173 KOG1034 Transcriptional repres 99.8 2.1E-19 4.6E-24 150.2 12.4 205 5-215 126-382 (385)
174 KOG4328 WD40 protein [Function 99.8 3.6E-18 7.8E-23 148.5 19.8 247 8-257 226-494 (498)
175 KOG0303 Actin-binding protein 99.8 2.8E-18 6E-23 146.7 17.9 203 56-261 76-297 (472)
176 KOG1963 WD40 repeat protein [G 99.8 9.8E-17 2.1E-21 149.8 28.3 288 13-305 202-543 (792)
177 KOG0307 Vesicle coat complex C 99.8 1E-18 2.2E-23 167.1 14.0 244 18-261 66-330 (1049)
178 KOG1334 WD40 repeat protein [G 99.8 5.4E-18 1.2E-22 148.6 14.9 293 5-300 131-466 (559)
179 PRK01742 tolB translocation pr 99.8 4.3E-17 9.3E-22 151.4 22.0 235 40-281 183-426 (429)
180 KOG0290 Conserved WD40 repeat- 99.8 7.8E-17 1.7E-21 132.9 20.8 245 18-304 46-322 (364)
181 KOG1240 Protein kinase contain 99.8 2.6E-16 5.7E-21 151.4 26.4 260 46-306 1034-1340(1431)
182 KOG1587 Cytoplasmic dynein int 99.8 1.8E-16 3.9E-21 147.4 24.3 260 40-300 221-516 (555)
183 KOG1587 Cytoplasmic dynein int 99.7 2.9E-16 6.3E-21 145.9 22.4 241 16-259 242-517 (555)
184 KOG1007 WD repeat protein TSSC 99.7 1.5E-16 3.3E-21 131.2 17.8 220 39-300 38-289 (370)
185 KOG2919 Guanine nucleotide-bin 99.7 2.9E-16 6.2E-21 131.4 18.6 202 103-304 50-285 (406)
186 KOG1310 WD40 repeat protein [G 99.7 4.2E-17 9.2E-22 144.9 14.0 163 54-216 43-231 (758)
187 KOG0644 Uncharacterized conser 99.7 7.4E-18 1.6E-22 156.2 9.1 244 53-308 182-434 (1113)
188 KOG1963 WD40 repeat protein [G 99.7 8.7E-15 1.9E-19 137.0 28.9 294 4-303 4-441 (792)
189 KOG0771 Prolactin regulatory e 99.7 3E-16 6.4E-21 135.6 17.1 201 65-301 148-355 (398)
190 KOG1240 Protein kinase contain 99.7 2.5E-15 5.4E-20 144.8 24.6 283 13-298 1045-1431(1431)
191 PRK11028 6-phosphogluconolacto 99.7 1.2E-14 2.5E-19 130.8 27.7 226 76-302 5-260 (330)
192 KOG0290 Conserved WD40 repeat- 99.7 7.7E-16 1.7E-20 127.1 16.3 196 14-211 148-360 (364)
193 KOG1009 Chromatin assembly com 99.7 3E-15 6.6E-20 128.7 19.4 240 62-304 14-333 (434)
194 PF02239 Cytochrom_D1: Cytochr 99.7 1.4E-13 3.1E-18 124.3 31.3 272 33-305 8-352 (369)
195 KOG4227 WD40 repeat protein [G 99.7 5.6E-15 1.2E-19 126.7 20.2 250 53-305 48-327 (609)
196 KOG0649 WD40 repeat protein [G 99.7 9.6E-14 2.1E-18 112.2 23.0 198 8-216 53-274 (325)
197 KOG0642 Cell-cycle nuclear pro 99.7 1.6E-15 3.4E-20 135.5 14.1 205 12-221 340-566 (577)
198 KOG1523 Actin-related protein 99.7 6.1E-14 1.3E-18 117.5 22.6 202 13-218 7-238 (361)
199 KOG1445 Tumor-specific antigen 99.7 1.8E-15 3.9E-20 136.8 14.3 123 16-140 627-758 (1012)
200 PRK01742 tolB translocation pr 99.7 2E-14 4.4E-19 133.5 21.9 210 82-299 183-400 (429)
201 KOG1517 Guanine nucleotide bin 99.7 1.6E-14 3.5E-19 137.5 20.9 236 65-302 1068-1335(1387)
202 KOG1524 WD40 repeat-containing 99.7 5.4E-15 1.2E-19 131.4 16.5 167 32-203 76-243 (737)
203 KOG1188 WD40 repeat protein [G 99.7 1.1E-14 2.3E-19 122.9 17.0 188 115-303 41-245 (376)
204 KOG2110 Uncharacterized conser 99.6 4.1E-13 8.8E-18 114.6 26.6 238 17-303 6-251 (391)
205 KOG1334 WD40 repeat protein [G 99.6 3.3E-15 7.2E-20 131.3 14.1 254 54-308 135-432 (559)
206 KOG0771 Prolactin regulatory e 99.6 8.3E-15 1.8E-19 126.8 15.4 190 20-214 148-352 (398)
207 KOG1538 Uncharacterized conser 99.6 6.7E-14 1.5E-18 127.5 20.6 228 63-299 14-251 (1081)
208 PRK02889 tolB translocation pr 99.6 5.7E-13 1.2E-17 123.7 25.3 236 42-281 177-425 (427)
209 PRK03629 tolB translocation pr 99.6 1.5E-12 3.3E-17 120.9 26.5 233 42-280 180-427 (429)
210 KOG3881 Uncharacterized conser 99.6 3.3E-13 7.1E-18 115.9 20.1 242 61-305 55-325 (412)
211 KOG1272 WD40-repeat-containing 99.6 7.4E-15 1.6E-19 128.4 8.3 199 103-306 130-329 (545)
212 KOG1272 WD40-repeat-containing 99.6 3.1E-14 6.8E-19 124.6 11.7 264 19-293 132-402 (545)
213 KOG4497 Uncharacterized conser 99.6 5E-12 1.1E-16 106.6 24.3 252 38-294 68-426 (447)
214 PRK04922 tolB translocation pr 99.6 1.7E-12 3.6E-17 121.0 23.6 233 42-280 185-432 (433)
215 PRK05137 tolB translocation pr 99.6 6.3E-12 1.4E-16 117.2 27.2 232 42-280 183-432 (435)
216 KOG2111 Uncharacterized conser 99.5 7.2E-12 1.6E-16 105.1 24.2 234 19-303 8-259 (346)
217 PRK03629 tolB translocation pr 99.5 1.4E-11 3E-16 114.4 28.0 211 84-300 180-406 (429)
218 KOG2111 Uncharacterized conser 99.5 2.3E-11 5E-16 102.2 25.9 173 41-218 75-258 (346)
219 PRK05137 tolB translocation pr 99.5 2E-11 4.3E-16 113.9 27.6 214 83-301 182-413 (435)
220 KOG2321 WD40 repeat protein [G 99.5 8.8E-12 1.9E-16 112.1 23.6 275 14-299 49-342 (703)
221 PRK04922 tolB translocation pr 99.5 1.5E-11 3.4E-16 114.5 25.5 212 83-300 184-411 (433)
222 PF02239 Cytochrom_D1: Cytochr 99.5 1.2E-10 2.7E-15 105.3 28.7 243 21-267 41-356 (369)
223 KOG1524 WD40 repeat-containing 99.5 1.4E-12 3E-17 116.3 15.5 174 13-207 101-276 (737)
224 KOG2110 Uncharacterized conser 99.5 1.4E-10 3E-15 99.3 26.8 267 19-302 49-332 (391)
225 KOG2321 WD40 repeat protein [G 99.5 1.5E-12 3.2E-17 117.0 15.5 190 20-213 137-340 (703)
226 KOG1354 Serine/threonine prote 99.4 9.8E-12 2.1E-16 105.4 17.8 241 16-261 25-362 (433)
227 KOG3881 Uncharacterized conser 99.4 2.9E-11 6.3E-16 104.1 20.7 259 17-281 56-342 (412)
228 KOG2139 WD40 repeat protein [G 99.4 4.5E-11 9.7E-16 102.1 21.4 237 63-301 100-384 (445)
229 TIGR02658 TTQ_MADH_Hv methylam 99.4 2E-09 4.4E-14 95.6 31.7 255 41-307 27-337 (352)
230 KOG2315 Predicted translation 99.4 1.2E-09 2.7E-14 98.3 29.8 276 17-303 35-393 (566)
231 KOG0974 WD-repeat protein WDR6 99.4 3E-11 6.6E-16 115.5 20.8 146 28-177 142-289 (967)
232 KOG0322 G-protein beta subunit 99.4 5.1E-12 1.1E-16 103.4 11.8 158 14-175 148-322 (323)
233 TIGR02800 propeller_TolB tol-p 99.4 3E-10 6.6E-15 105.6 25.5 229 42-276 171-414 (417)
234 PRK04792 tolB translocation pr 99.4 4.5E-10 9.8E-15 104.9 26.2 233 42-280 199-446 (448)
235 KOG2394 WD40 protein DMR-N9 [G 99.4 1.8E-12 4E-17 115.5 9.4 93 16-111 290-383 (636)
236 PRK02889 tolB translocation pr 99.4 2.7E-10 6E-15 105.9 24.4 203 83-292 176-392 (427)
237 KOG1523 Actin-related protein 99.4 1.3E-10 2.7E-15 97.8 19.4 219 60-303 9-239 (361)
238 PF10282 Lactonase: Lactonase, 99.4 9.6E-09 2.1E-13 92.9 32.9 259 41-300 13-322 (345)
239 KOG2139 WD40 repeat protein [G 99.4 1.8E-10 3.8E-15 98.5 19.2 189 103-295 99-306 (445)
240 PRK00178 tolB translocation pr 99.4 1.1E-09 2.3E-14 102.3 26.7 232 43-280 181-427 (430)
241 PF08662 eIF2A: Eukaryotic tra 99.3 3.1E-11 6.8E-16 99.4 14.4 111 15-132 58-179 (194)
242 TIGR02800 propeller_TolB tol-p 99.3 6.1E-10 1.3E-14 103.5 24.4 205 82-292 169-386 (417)
243 KOG4190 Uncharacterized conser 99.3 7.6E-12 1.6E-16 112.2 10.7 240 54-299 728-987 (1034)
244 PF08662 eIF2A: Eukaryotic tra 99.3 2E-10 4.4E-15 94.6 18.6 152 27-184 13-186 (194)
245 KOG2394 WD40 protein DMR-N9 [G 99.3 1.1E-10 2.4E-15 104.4 17.5 197 27-279 181-383 (636)
246 TIGR03300 assembly_YfgL outer 99.3 5E-09 1.1E-13 96.1 28.6 263 31-305 65-343 (377)
247 KOG4497 Uncharacterized conser 99.3 3.2E-11 7E-16 101.8 12.1 219 66-298 13-238 (447)
248 TIGR03300 assembly_YfgL outer 99.3 5.5E-09 1.2E-13 95.8 28.0 256 31-297 105-376 (377)
249 KOG0974 WD-repeat protein WDR6 99.3 1.9E-10 4.2E-15 110.1 17.9 183 31-217 99-289 (967)
250 PRK00178 tolB translocation pr 99.3 3.8E-09 8.3E-14 98.6 26.5 210 84-299 180-405 (430)
251 KOG1064 RAVE (regulator of V-A 99.3 8.8E-11 1.9E-15 117.8 14.8 194 57-266 2204-2406(2439)
252 PF10282 Lactonase: Lactonase, 99.3 7.9E-08 1.7E-12 86.9 33.0 255 20-278 40-345 (345)
253 KOG4547 WD40 repeat-containing 99.3 9.2E-10 2E-14 99.7 19.3 187 71-301 3-221 (541)
254 KOG3914 WD repeat protein WDR4 99.2 1.6E-10 3.5E-15 100.0 13.6 158 27-186 70-233 (390)
255 KOG4190 Uncharacterized conser 99.2 6E-11 1.3E-15 106.6 11.2 276 12-296 731-1032(1034)
256 KOG0280 Uncharacterized conser 99.2 1.8E-09 3.9E-14 90.0 18.8 183 16-198 69-264 (339)
257 PRK04792 tolB translocation pr 99.2 7.7E-09 1.7E-13 96.6 25.5 210 84-299 199-424 (448)
258 PRK01029 tolB translocation pr 99.2 2.6E-08 5.6E-13 92.4 27.2 237 42-281 166-425 (428)
259 PLN02919 haloacid dehalogenase 99.2 4.4E-08 9.5E-13 100.0 30.2 236 66-304 572-892 (1057)
260 KOG1064 RAVE (regulator of V-A 99.2 2.6E-10 5.5E-15 114.6 12.3 196 17-227 2209-2409(2439)
261 KOG1409 Uncharacterized conser 99.2 2.8E-09 6.2E-14 90.7 16.2 249 51-303 14-273 (404)
262 KOG0309 Conserved WD40 repeat- 99.1 7.2E-10 1.6E-14 102.8 13.6 278 16-300 24-339 (1081)
263 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.8E-07 3.8E-12 83.3 28.0 236 28-266 54-338 (352)
264 KOG2041 WD40 repeat protein [G 99.1 1.6E-08 3.5E-13 93.8 21.2 272 18-298 16-335 (1189)
265 KOG1409 Uncharacterized conser 99.1 1.1E-08 2.3E-13 87.3 17.9 280 16-301 68-395 (404)
266 KOG1354 Serine/threonine prote 99.1 1.4E-09 3E-14 92.6 11.9 199 101-300 24-301 (433)
267 PLN02919 haloacid dehalogenase 99.1 2.6E-07 5.7E-12 94.4 30.3 238 20-262 571-892 (1057)
268 PRK01029 tolB translocation pr 99.1 1.6E-07 3.4E-12 87.3 26.3 193 27-220 192-407 (428)
269 COG4946 Uncharacterized protei 99.0 5.5E-07 1.2E-11 80.2 26.6 169 30-203 331-504 (668)
270 KOG0280 Uncharacterized conser 99.0 1.5E-08 3.2E-13 84.7 15.0 149 28-178 130-286 (339)
271 COG5354 Uncharacterized protei 99.0 7.2E-07 1.6E-11 80.0 26.1 277 18-305 73-400 (561)
272 COG5170 CDC55 Serine/threonine 99.0 1E-08 2.2E-13 86.3 13.7 210 15-228 25-322 (460)
273 KOG4547 WD40 repeat-containing 99.0 2.4E-07 5.2E-12 84.3 22.3 184 29-216 3-220 (541)
274 PF00400 WD40: WD domain, G-be 99.0 2E-09 4.3E-14 64.0 5.4 39 51-89 1-39 (39)
275 PRK11138 outer membrane biogen 98.9 1.9E-06 4.2E-11 79.5 27.8 255 32-299 121-393 (394)
276 PF13360 PQQ_2: PQQ-like domai 98.9 5.8E-07 1.3E-11 76.7 22.3 215 40-263 2-235 (238)
277 PF04762 IKI3: IKI3 family; I 98.9 7.2E-06 1.6E-10 82.7 32.5 276 17-302 76-458 (928)
278 PF00400 WD40: WD domain, G-be 98.9 3.7E-09 8.1E-14 62.7 5.7 39 260-298 1-39 (39)
279 COG2706 3-carboxymuconate cycl 98.9 2.8E-05 6.1E-10 67.4 32.1 260 14-279 37-345 (346)
280 KOG0882 Cyclophilin-related pe 98.9 5.8E-08 1.3E-12 85.6 15.1 276 15-297 8-369 (558)
281 COG2706 3-carboxymuconate cycl 98.9 2.2E-06 4.8E-11 74.0 24.4 220 82-301 15-275 (346)
282 KOG4532 WD40-like repeat conta 98.9 4E-07 8.6E-12 75.4 18.6 218 82-306 51-288 (344)
283 KOG4714 Nucleoporin [Nuclear s 98.9 4.5E-08 9.8E-13 80.5 12.9 143 30-177 100-255 (319)
284 PF15492 Nbas_N: Neuroblastoma 98.9 6.3E-06 1.4E-10 69.3 25.4 218 67-305 3-264 (282)
285 KOG2066 Vacuolar assembly/sort 98.9 1.5E-07 3.1E-12 88.7 17.0 182 16-216 39-233 (846)
286 PF13360 PQQ_2: PQQ-like domai 98.9 2.1E-06 4.5E-11 73.3 22.9 213 82-303 2-233 (238)
287 COG5170 CDC55 Serine/threonine 98.8 3E-08 6.4E-13 83.6 10.5 233 61-302 26-311 (460)
288 KOG4532 WD40-like repeat conta 98.8 9E-07 2E-11 73.3 18.9 199 21-223 72-289 (344)
289 COG5354 Uncharacterized protei 98.8 4.1E-06 8.9E-11 75.3 24.3 275 16-301 32-349 (561)
290 KOG2314 Translation initiation 98.8 1.3E-06 2.8E-11 79.3 20.2 232 65-300 214-478 (698)
291 KOG3914 WD repeat protein WDR4 98.8 1.3E-07 2.7E-12 82.4 12.9 158 107-266 67-231 (390)
292 PRK11138 outer membrane biogen 98.8 4.9E-06 1.1E-10 76.8 24.4 263 31-305 69-358 (394)
293 KOG1832 HIV-1 Vpr-binding prot 98.8 3.6E-09 7.7E-14 100.2 3.3 197 12-224 1097-1299(1516)
294 KOG1645 RING-finger-containing 98.8 1.3E-06 2.8E-11 76.3 18.5 253 43-299 175-460 (463)
295 KOG1645 RING-finger-containing 98.7 1.1E-06 2.4E-11 76.7 16.7 241 12-257 189-460 (463)
296 PF08450 SGL: SMP-30/Gluconola 98.7 8.4E-05 1.8E-09 63.9 28.4 215 66-288 4-244 (246)
297 KOG0309 Conserved WD40 repeat- 98.7 1.8E-07 3.9E-12 87.3 11.3 146 7-155 105-255 (1081)
298 KOG4714 Nucleoporin [Nuclear s 98.7 9.7E-07 2.1E-11 72.8 14.3 183 31-217 47-255 (319)
299 KOG2314 Translation initiation 98.7 7.6E-06 1.6E-10 74.4 21.0 266 27-299 218-572 (698)
300 KOG2695 WD40 repeat protein [G 98.7 1E-07 2.2E-12 81.5 8.6 153 35-189 228-389 (425)
301 PRK04043 tolB translocation pr 98.7 1.9E-05 4E-10 73.1 24.1 191 103-300 188-400 (419)
302 KOG2315 Predicted translation 98.6 2.8E-05 6.1E-10 70.8 23.6 233 61-300 34-302 (566)
303 PRK04043 tolB translocation pr 98.6 6.2E-05 1.3E-09 69.7 26.6 190 63-258 189-400 (419)
304 PF15492 Nbas_N: Neuroblastoma 98.6 5E-05 1.1E-09 64.0 22.4 197 29-227 7-270 (282)
305 KOG2695 WD40 repeat protein [G 98.6 2.1E-07 4.6E-12 79.5 8.5 150 77-227 228-387 (425)
306 KOG1275 PAB-dependent poly(A) 98.6 3.7E-06 7.9E-11 80.6 16.4 181 113-298 146-340 (1118)
307 KOG0882 Cyclophilin-related pe 98.6 1E-06 2.2E-11 78.0 11.9 216 60-305 8-236 (558)
308 KOG2041 WD40 repeat protein [G 98.5 3E-06 6.6E-11 79.1 15.1 228 62-292 15-280 (1189)
309 KOG1912 WD40 repeat protein [G 98.5 2.9E-05 6.3E-10 73.4 21.2 204 13-217 52-305 (1062)
310 PF04762 IKI3: IKI3 family; I 98.5 0.00013 2.7E-09 73.9 26.6 276 18-300 23-333 (928)
311 PF07433 DUF1513: Protein of u 98.5 0.00046 1E-08 59.8 25.3 222 66-292 9-278 (305)
312 PF08450 SGL: SMP-30/Gluconola 98.4 0.00081 1.8E-08 57.7 28.5 207 30-245 11-243 (246)
313 KOG1832 HIV-1 Vpr-binding prot 98.4 3.1E-07 6.7E-12 87.4 5.7 198 51-264 1091-1297(1516)
314 KOG2114 Vacuolar assembly/sort 98.4 0.00016 3.4E-09 69.4 22.4 194 29-224 33-251 (933)
315 cd00216 PQQ_DH Dehydrogenases 98.3 0.00045 9.7E-09 65.6 24.2 231 32-267 111-433 (488)
316 KOG1920 IkappaB kinase complex 98.3 0.00029 6.3E-09 70.1 22.6 231 62-300 69-322 (1265)
317 COG4946 Uncharacterized protei 98.3 0.00031 6.8E-09 63.1 20.8 116 14-133 357-478 (668)
318 PF07433 DUF1513: Protein of u 98.3 0.00047 1E-08 59.7 21.4 180 29-210 60-279 (305)
319 cd00216 PQQ_DH Dehydrogenases 98.3 0.00081 1.7E-08 63.9 25.2 266 33-306 63-430 (488)
320 KOG1912 WD40 repeat protein [G 98.3 6.1E-05 1.3E-09 71.3 16.8 264 19-301 18-305 (1062)
321 KOG3617 WD40 and TPR repeat-co 98.3 7.6E-05 1.7E-09 71.4 17.2 102 29-132 25-131 (1416)
322 KOG3621 WD40 repeat-containing 98.2 0.00063 1.4E-08 64.1 21.7 158 15-179 32-200 (726)
323 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.0023 4.9E-08 58.2 25.4 256 28-287 1-344 (353)
324 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.0029 6.3E-08 52.9 28.1 280 13-301 29-352 (354)
325 KOG2066 Vacuolar assembly/sort 98.2 0.00046 1E-08 65.8 20.0 180 64-258 42-233 (846)
326 PRK02888 nitrous-oxide reducta 98.2 0.00069 1.5E-08 64.2 21.2 176 69-259 200-405 (635)
327 KOG1008 Uncharacterized conser 98.1 2.1E-06 4.6E-11 79.2 4.3 197 102-300 56-275 (783)
328 KOG1920 IkappaB kinase complex 98.1 0.0042 9.1E-08 62.2 26.6 199 17-223 69-329 (1265)
329 KOG1275 PAB-dependent poly(A) 98.1 3.2E-05 6.9E-10 74.4 11.0 143 30-175 186-341 (1118)
330 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00044 9.6E-09 50.3 14.0 103 19-127 2-109 (111)
331 PF11768 DUF3312: Protein of u 98.0 5.2E-05 1.1E-09 70.0 11.2 74 59-133 257-330 (545)
332 PRK02888 nitrous-oxide reducta 98.0 0.002 4.3E-08 61.2 21.7 139 162-301 209-405 (635)
333 PF11768 DUF3312: Protein of u 97.9 0.0043 9.3E-08 57.7 21.6 74 224-300 256-329 (545)
334 PF06433 Me-amine-dh_H: Methyl 97.9 0.011 2.4E-07 52.1 23.0 238 28-268 44-330 (342)
335 PF00780 CNH: CNH domain; Int 97.9 0.013 2.8E-07 51.1 26.7 225 30-268 6-265 (275)
336 KOG1008 Uncharacterized conser 97.9 5.2E-06 1.1E-10 76.7 2.1 162 13-177 99-276 (783)
337 smart00320 WD40 WD40 repeats. 97.9 3.7E-05 8E-10 44.0 5.2 39 51-89 2-40 (40)
338 smart00320 WD40 WD40 repeats. 97.9 4.7E-05 1E-09 43.6 5.6 38 261-298 3-40 (40)
339 PF06433 Me-amine-dh_H: Methyl 97.9 0.0098 2.1E-07 52.4 22.0 257 42-306 18-326 (342)
340 PF06977 SdiA-regulated: SdiA- 97.9 0.012 2.6E-07 50.2 23.8 192 12-209 17-243 (248)
341 KOG2114 Vacuolar assembly/sort 97.9 0.004 8.6E-08 60.2 20.7 200 68-271 30-257 (933)
342 PF00780 CNH: CNH domain; Int 97.9 0.016 3.4E-07 50.6 24.8 224 71-305 5-260 (275)
343 KOG4441 Proteins containing BT 97.8 0.0037 8.1E-08 60.2 19.6 216 30-250 284-533 (571)
344 COG0823 TolB Periplasmic compo 97.8 0.0063 1.4E-07 56.3 20.2 165 51-219 182-361 (425)
345 PF04053 Coatomer_WDAD: Coatom 97.7 0.026 5.6E-07 52.5 23.1 217 63-300 34-262 (443)
346 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0021 4.5E-08 46.9 12.3 102 148-253 2-109 (111)
347 KOG2395 Protein involved in va 97.7 0.00074 1.6E-08 61.7 11.7 143 156-300 344-500 (644)
348 PF08553 VID27: VID27 cytoplas 97.6 0.0015 3.2E-08 64.2 14.5 143 156-300 491-647 (794)
349 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.028 6E-07 47.2 22.6 136 72-210 22-159 (354)
350 PF03178 CPSF_A: CPSF A subuni 97.6 0.011 2.5E-07 52.9 18.8 131 168-301 62-203 (321)
351 KOG3617 WD40 and TPR repeat-co 97.6 0.00036 7.7E-09 67.0 9.0 140 193-345 21-165 (1416)
352 PF08596 Lgl_C: Lethal giant l 97.6 0.035 7.6E-07 50.9 21.7 236 63-299 3-337 (395)
353 PF04053 Coatomer_WDAD: Coatom 97.6 0.0059 1.3E-07 56.7 16.8 148 139-300 26-173 (443)
354 COG3391 Uncharacterized conser 97.5 0.076 1.6E-06 48.8 28.0 214 66-281 78-309 (381)
355 COG3391 Uncharacterized conser 97.5 0.08 1.7E-06 48.6 28.9 255 43-303 13-286 (381)
356 KOG4441 Proteins containing BT 97.5 0.023 5E-07 54.9 20.2 218 71-293 283-534 (571)
357 PF03178 CPSF_A: CPSF A subuni 97.5 0.053 1.1E-06 48.6 21.3 207 84-297 3-262 (321)
358 PHA02713 hypothetical protein; 97.5 0.012 2.5E-07 56.9 18.0 214 42-261 273-536 (557)
359 KOG3621 WD40 repeat-containing 97.4 0.0061 1.3E-07 57.7 15.0 120 57-177 28-155 (726)
360 PF02897 Peptidase_S9_N: Proly 97.4 0.099 2.1E-06 48.6 25.4 233 26-262 130-408 (414)
361 PHA02713 hypothetical protein; 97.3 0.03 6.5E-07 54.1 18.7 211 84-300 273-533 (557)
362 PF06977 SdiA-regulated: SdiA- 97.3 0.078 1.7E-06 45.3 18.9 191 103-297 22-247 (248)
363 PF05096 Glu_cyclase_2: Glutam 97.3 0.093 2E-06 44.8 23.4 190 96-289 36-250 (264)
364 PF02897 Peptidase_S9_N: Proly 97.3 0.17 3.6E-06 47.1 26.5 239 64-303 126-407 (414)
365 PF04841 Vps16_N: Vps16, N-ter 97.2 0.061 1.3E-06 49.9 19.2 31 270-300 216-246 (410)
366 KOG2444 WD40 repeat protein [G 97.2 0.00099 2.1E-08 54.6 6.0 139 164-303 36-180 (238)
367 COG0823 TolB Periplasmic compo 97.1 0.068 1.5E-06 49.6 18.3 179 103-287 193-386 (425)
368 PF08553 VID27: VID27 cytoplas 97.1 0.016 3.4E-07 57.2 14.6 137 76-215 497-646 (794)
369 KOG4640 Anaphase-promoting com 97.1 0.0033 7.2E-08 58.7 9.0 89 19-111 23-114 (665)
370 KOG4640 Anaphase-promoting com 97.1 0.0034 7.4E-08 58.6 9.0 75 62-137 21-97 (665)
371 KOG1897 Damage-specific DNA bi 97.1 0.39 8.5E-06 47.9 25.3 275 21-300 585-898 (1096)
372 PF14583 Pectate_lyase22: Olig 96.9 0.33 7.2E-06 43.9 25.7 271 25-300 41-381 (386)
373 PF08596 Lgl_C: Lethal giant l 96.8 0.37 7.9E-06 44.4 19.9 193 13-210 83-329 (395)
374 COG3386 Gluconolactonase [Carb 96.7 0.38 8.2E-06 42.6 22.3 200 33-238 39-265 (307)
375 KOG2395 Protein involved in va 96.7 0.043 9.3E-07 50.7 12.5 141 73-216 346-500 (644)
376 PRK13616 lipoprotein LpqB; Pro 96.5 0.7 1.5E-05 45.0 20.5 168 40-213 328-522 (591)
377 PRK13616 lipoprotein LpqB; Pro 96.5 0.38 8.3E-06 46.7 18.7 148 18-175 351-524 (591)
378 KOG2444 WD40 repeat protein [G 96.5 0.0065 1.4E-07 49.9 5.7 130 78-215 35-165 (238)
379 PF14870 PSII_BNR: Photosynthe 96.5 0.37 8.1E-06 42.4 17.1 150 16-173 144-301 (302)
380 PF12894 Apc4_WD40: Anaphase-p 96.5 0.01 2.2E-07 36.2 5.0 30 270-299 11-40 (47)
381 PF15390 DUF4613: Domain of un 96.3 0.82 1.8E-05 43.3 18.5 174 18-203 21-218 (671)
382 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.3 1.1 2.5E-05 43.0 27.7 235 33-268 122-500 (527)
383 COG3386 Gluconolactonase [Carb 96.3 0.74 1.6E-05 40.8 20.7 209 75-290 39-276 (307)
384 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.2 1.3 2.9E-05 42.5 29.6 186 33-221 71-338 (527)
385 COG3490 Uncharacterized protei 96.1 0.83 1.8E-05 39.3 23.3 265 17-298 35-346 (366)
386 TIGR03074 PQQ_membr_DH membran 96.0 1.9 4.2E-05 43.3 22.2 115 25-140 189-352 (764)
387 PHA02790 Kelch-like protein; P 96.0 0.75 1.6E-05 43.7 17.6 183 72-259 271-471 (480)
388 KOG1897 Damage-specific DNA bi 95.9 2.2 4.7E-05 42.9 26.5 281 16-303 530-859 (1096)
389 PHA03098 kelch-like protein; P 95.8 0.71 1.5E-05 44.5 17.0 185 71-259 293-512 (534)
390 PHA03098 kelch-like protein; P 95.7 0.87 1.9E-05 43.9 17.1 141 157-300 342-511 (534)
391 PF00930 DPPIV_N: Dipeptidyl p 95.6 1.7 3.6E-05 39.5 22.8 217 81-299 21-312 (353)
392 COG3490 Uncharacterized protei 95.5 1.3 2.8E-05 38.1 14.9 184 27-214 121-346 (366)
393 PF14870 PSII_BNR: Photosynthe 95.5 1.7 3.7E-05 38.4 19.7 157 52-212 135-300 (302)
394 COG3204 Uncharacterized protei 95.4 1.6 3.4E-05 37.8 18.4 160 13-176 82-263 (316)
395 KOG4499 Ca2+-binding protein R 95.3 1.4 3.1E-05 36.8 20.0 53 239-291 222-276 (310)
396 COG5167 VID27 Protein involved 95.3 0.36 7.8E-06 44.7 11.9 143 156-300 478-632 (776)
397 PF05096 Glu_cyclase_2: Glutam 95.2 1.8 3.9E-05 37.1 19.1 163 14-184 42-211 (264)
398 PHA02790 Kelch-like protein; P 95.1 1.7 3.7E-05 41.4 16.7 142 30-179 271-426 (480)
399 PF04841 Vps16_N: Vps16, N-ter 95.0 2.9 6.4E-05 38.8 29.6 167 42-216 62-246 (410)
400 PF14761 HPS3_N: Hermansky-Pud 94.9 1.8 3.9E-05 35.8 15.2 103 72-178 29-165 (215)
401 PF12894 Apc4_WD40: Anaphase-p 94.8 0.11 2.5E-06 31.6 5.2 31 102-132 11-41 (47)
402 KOG2079 Vacuolar assembly/sort 94.6 0.18 4E-06 50.5 8.7 99 113-214 98-201 (1206)
403 KOG2079 Vacuolar assembly/sort 94.5 0.12 2.6E-06 51.7 7.2 71 16-91 130-203 (1206)
404 COG3823 Glutamine cyclotransfe 94.2 1.8 3.9E-05 35.6 11.9 171 113-289 55-248 (262)
405 PF05694 SBP56: 56kDa selenium 94.2 4.6 0.0001 37.2 16.9 150 29-178 139-344 (461)
406 PF07569 Hira: TUP1-like enhan 94.1 0.41 8.9E-06 40.2 8.8 60 157-216 21-95 (219)
407 KOG4499 Ca2+-binding protein R 94.1 2.4 5.2E-05 35.5 12.7 132 64-197 111-263 (310)
408 PRK13684 Ycf48-like protein; P 94.0 4.4 9.6E-05 36.5 17.2 148 18-175 174-330 (334)
409 PF10647 Gmad1: Lipoprotein Lp 93.9 3.9 8.4E-05 35.2 21.4 150 18-172 25-192 (253)
410 PF12234 Rav1p_C: RAVE protein 93.6 2.5 5.3E-05 41.2 13.9 108 106-215 33-155 (631)
411 PF14727 PHTB1_N: PTHB1 N-term 93.6 6.1 0.00013 36.6 18.3 143 157-300 36-204 (418)
412 PF15390 DUF4613: Domain of un 93.0 8.7 0.00019 36.7 17.0 148 62-216 20-186 (671)
413 PRK10115 protease 2; Provision 92.7 12 0.00025 37.5 23.7 191 104-299 128-343 (686)
414 PF12234 Rav1p_C: RAVE protein 92.7 3.5 7.6E-05 40.1 13.5 105 68-175 36-155 (631)
415 KOG1916 Nuclear protein, conta 92.4 0.045 9.8E-07 53.6 0.5 158 18-177 182-375 (1283)
416 KOG3630 Nuclear pore complex, 92.1 1.9 4E-05 44.1 11.0 112 188-299 101-227 (1405)
417 PF10313 DUF2415: Uncharacteri 92.0 0.73 1.6E-05 27.3 5.1 32 146-177 1-34 (43)
418 PF10168 Nup88: Nuclear pore c 91.9 5 0.00011 40.0 13.9 35 269-303 145-182 (717)
419 TIGR03074 PQQ_membr_DH membran 91.8 16 0.00034 36.9 22.6 147 160-306 262-483 (764)
420 KOG3616 Selective LIM binding 91.7 5 0.00011 39.4 12.9 68 62-131 15-82 (1636)
421 PF07995 GSDH: Glucose / Sorbo 91.2 11 0.00024 33.9 25.7 57 239-295 270-330 (331)
422 KOG3630 Nuclear pore complex, 91.1 2 4.3E-05 43.9 10.0 133 30-162 111-260 (1405)
423 TIGR02276 beta_rpt_yvtn 40-res 91.0 1.3 2.8E-05 25.7 5.8 38 156-193 2-39 (42)
424 PF10647 Gmad1: Lipoprotein Lp 90.7 10 0.00022 32.6 17.5 142 63-206 25-184 (253)
425 PF10313 DUF2415: Uncharacteri 90.7 0.91 2E-05 26.9 4.6 31 271-301 1-34 (43)
426 TIGR02604 Piru_Ver_Nterm putat 90.5 14 0.0003 33.8 23.1 139 65-206 17-202 (367)
427 COG5167 VID27 Protein involved 90.4 8.7 0.00019 36.1 12.7 138 33-176 482-632 (776)
428 PF10168 Nup88: Nuclear pore c 90.4 3.6 7.7E-05 41.1 11.2 33 103-135 147-182 (717)
429 PF05694 SBP56: 56kDa selenium 89.7 17 0.00036 33.7 23.4 187 73-260 87-344 (461)
430 PF14655 RAB3GAP2_N: Rab3 GTPa 89.7 6.3 0.00014 36.5 11.6 34 104-137 309-342 (415)
431 PRK14131 N-acetylneuraminic ac 88.5 20 0.00043 32.9 18.3 11 239-249 279-289 (376)
432 COG4590 ABC-type uncharacteriz 87.8 4.2 9.1E-05 37.5 8.8 163 55-219 214-389 (733)
433 PF14655 RAB3GAP2_N: Rab3 GTPa 87.8 23 0.0005 32.9 22.6 89 107-196 6-117 (415)
434 PF11715 Nup160: Nucleoporin N 87.6 3.7 8.1E-05 39.8 9.2 37 63-99 216-256 (547)
435 PF07569 Hira: TUP1-like enhan 87.5 6.8 0.00015 32.9 9.6 60 30-90 21-94 (219)
436 PF12657 TFIIIC_delta: Transcr 87.1 5.9 0.00013 31.8 8.7 30 271-300 86-121 (173)
437 KOG1983 Tomosyn and related SN 87.0 31 0.00067 36.1 15.6 25 238-262 244-268 (993)
438 PLN00033 photosystem II stabil 86.9 26 0.00056 32.5 18.1 144 65-213 242-396 (398)
439 KOG2247 WD40 repeat-containing 86.9 0.16 3.5E-06 46.6 -0.5 139 150-292 39-180 (615)
440 PF14727 PHTB1_N: PTHB1 N-term 86.9 26 0.00057 32.6 25.9 268 30-305 36-365 (418)
441 TIGR03118 PEPCTERM_chp_1 conse 86.6 22 0.00047 31.3 22.7 197 19-221 25-284 (336)
442 PF08728 CRT10: CRT10; InterP 86.3 20 0.00043 35.6 13.0 112 64-175 103-245 (717)
443 PRK10115 protease 2; Provision 86.1 39 0.00085 33.8 30.7 230 27-261 134-397 (686)
444 PF12768 Rax2: Cortical protei 86.1 23 0.00049 31.0 13.8 91 42-132 17-123 (281)
445 TIGR03547 muta_rot_YjhT mutatr 86.1 26 0.00055 31.6 21.0 11 124-134 168-178 (346)
446 COG5276 Uncharacterized conser 85.6 24 0.00052 30.9 22.0 142 72-219 95-244 (370)
447 TIGR03548 mutarot_permut cycli 84.7 28 0.00062 31.0 14.9 103 30-134 72-196 (323)
448 PLN00033 photosystem II stabil 84.3 35 0.00075 31.6 16.7 138 29-173 248-396 (398)
449 TIGR02276 beta_rpt_yvtn 40-res 84.1 5.9 0.00013 22.8 5.6 29 240-268 4-32 (42)
450 PF07250 Glyoxal_oxid_N: Glyox 84.1 20 0.00044 30.6 10.8 137 86-224 49-205 (243)
451 TIGR03118 PEPCTERM_chp_1 conse 84.0 29 0.00064 30.5 24.4 213 65-280 26-307 (336)
452 PRK13684 Ycf48-like protein; P 83.8 33 0.0007 30.9 21.9 148 61-214 172-329 (334)
453 PF08728 CRT10: CRT10; InterP 83.5 22 0.00048 35.3 12.0 101 157-257 113-245 (717)
454 TIGR02604 Piru_Ver_Nterm putat 83.5 17 0.00037 33.2 11.0 60 61-121 123-202 (367)
455 PRK14131 N-acetylneuraminic ac 83.4 36 0.00078 31.2 20.5 12 112-123 138-149 (376)
456 KOG4460 Nuclear pore complex, 83.2 12 0.00026 35.3 9.5 94 18-135 105-201 (741)
457 PF11715 Nup160: Nucleoporin N 82.6 7.8 0.00017 37.6 8.9 73 112-184 156-256 (547)
458 TIGR03548 mutarot_permut cycli 82.6 35 0.00076 30.4 16.7 93 157-249 123-233 (323)
459 KOG2280 Vacuolar assembly/sort 82.4 55 0.0012 32.5 16.6 174 123-302 63-248 (829)
460 KOG2377 Uncharacterized conser 82.4 43 0.00093 31.3 12.9 117 60-178 65-187 (657)
461 KOG1916 Nuclear protein, conta 81.6 0.58 1.3E-05 46.3 0.7 59 241-300 196-265 (1283)
462 KOG1900 Nuclear pore complex, 81.5 22 0.00048 37.4 11.5 137 37-177 95-273 (1311)
463 PF07250 Glyoxal_oxid_N: Glyox 81.0 34 0.00074 29.2 11.9 138 44-185 49-206 (243)
464 PF14583 Pectate_lyase22: Olig 80.8 45 0.00098 30.5 24.1 225 30-255 91-378 (386)
465 KOG2377 Uncharacterized conser 80.6 50 0.0011 30.9 13.2 100 101-203 65-169 (657)
466 PF05935 Arylsulfotrans: Aryls 80.2 55 0.0012 31.2 16.6 154 30-187 114-312 (477)
467 TIGR03547 muta_rot_YjhT mutatr 80.1 45 0.00097 30.0 21.0 12 168-179 168-179 (346)
468 PF07676 PD40: WD40-like Beta 80.0 8.8 0.00019 21.8 5.6 30 268-297 6-38 (39)
469 smart00036 CNH Domain found in 79.5 44 0.00096 29.6 28.0 234 25-267 7-279 (302)
470 COG3204 Uncharacterized protei 79.0 44 0.00095 29.3 18.8 119 57-176 81-210 (316)
471 PF14761 HPS3_N: Hermansky-Pud 78.8 37 0.0008 28.3 15.9 134 159-298 30-212 (215)
472 PF14781 BBS2_N: Ciliary BBSom 77.5 30 0.00064 26.5 13.4 97 160-257 12-124 (136)
473 PF10395 Utp8: Utp8 family; I 77.1 80 0.0017 31.2 15.9 158 61-221 129-310 (670)
474 PF03088 Str_synth: Strictosid 75.7 12 0.00026 26.3 5.7 51 79-129 33-85 (89)
475 PLN02193 nitrile-specifier pro 75.7 75 0.0016 30.2 17.9 52 239-291 328-387 (470)
476 PLN02153 epithiospecifier prot 75.5 61 0.0013 29.1 17.4 23 157-179 85-112 (341)
477 PF07995 GSDH: Glucose / Sorbo 74.2 66 0.0014 28.9 13.2 104 190-293 4-136 (331)
478 KOG3616 Selective LIM binding 73.9 21 0.00045 35.4 8.4 106 101-214 13-124 (1636)
479 KOG3522 Predicted guanine nucl 72.4 19 0.00041 36.0 7.9 143 75-223 549-704 (925)
480 KOG4659 Uncharacterized conser 72.0 1.5E+02 0.0032 31.9 22.4 67 274-340 596-674 (1899)
481 PF03088 Str_synth: Strictosid 71.1 11 0.00025 26.4 4.7 41 166-206 35-75 (89)
482 PF10395 Utp8: Utp8 family; I 69.4 1.2E+02 0.0027 30.0 17.8 160 100-263 127-310 (670)
483 COG3823 Glutamine cyclotransfe 69.0 67 0.0015 26.8 14.0 172 30-205 55-247 (262)
484 PF08801 Nucleoporin_N: Nup133 68.6 77 0.0017 29.5 11.2 30 147-177 191-220 (422)
485 smart00564 PQQ beta-propeller 66.9 11 0.00023 20.3 3.2 25 33-57 8-32 (33)
486 PF12768 Rax2: Cortical protei 65.1 96 0.0021 27.2 12.0 94 83-176 16-123 (281)
487 PF01011 PQQ: PQQ enzyme repea 63.9 24 0.00051 20.0 4.4 25 163-187 5-29 (38)
488 PF14269 Arylsulfotran_2: Aryl 63.8 34 0.00073 30.3 7.3 62 29-90 153-219 (299)
489 KOG4460 Nuclear pore complex, 63.3 1.1E+02 0.0023 29.4 10.4 95 64-181 106-203 (741)
490 PF14781 BBS2_N: Ciliary BBSom 63.2 66 0.0014 24.6 14.4 110 68-181 5-130 (136)
491 COG1520 FOG: WD40-like repeat 62.9 1.2E+02 0.0026 27.6 26.1 193 30-227 68-279 (370)
492 PLN02193 nitrile-specifier pro 62.2 1.5E+02 0.0032 28.2 19.4 54 208-261 343-413 (470)
493 PF13570 PQQ_3: PQQ-like domai 62.0 23 0.00049 20.3 4.1 20 197-216 20-39 (40)
494 KOG2247 WD40 repeat-containing 62.0 1.4 3E-05 40.8 -1.7 127 27-158 42-172 (615)
495 PF12657 TFIIIC_delta: Transcr 57.4 98 0.0021 24.7 9.3 31 146-176 86-121 (173)
496 PF01436 NHL: NHL repeat; Int 53.7 32 0.00069 18.0 4.1 25 105-129 4-28 (28)
497 KOG1900 Nuclear pore complex, 53.6 1.2E+02 0.0027 32.2 10.0 34 268-301 240-273 (1311)
498 KOG1898 Splicing factor 3b, su 53.2 2.9E+02 0.0064 29.0 19.3 108 193-301 939-1049(1205)
499 TIGR02608 delta_60_rpt delta-6 52.0 45 0.00097 21.0 4.4 29 272-300 2-35 (55)
500 COG4590 ABC-type uncharacteriz 51.3 1.4E+02 0.0031 28.0 9.0 104 201-306 283-392 (733)
No 1
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5e-62 Score=389.47 Aligned_cols=331 Identities=65% Similarity=1.073 Sum_probs=305.6
Q ss_pred ccccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCC
Q 018784 4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF 83 (350)
Q Consensus 4 ~~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg 83 (350)
-+.+.|++|+||+.||..++|+|++|+|.+|++++.|+.-.+.+.++|.++.+|+||.+.|++.+++.+....||++.|.
T Consensus 2 ~~~~~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadf 81 (334)
T KOG0278|consen 2 AMRQTPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADF 81 (334)
T ss_pred CcccCceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784 84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163 (350)
Q Consensus 84 ~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s 163 (350)
+.+|||..++..++++.|+..|.+++|+.|.++|++|+.+..+||||+.+++.++.....|.+.|..+.|.+.++.++.+
T Consensus 82 takvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877765554
Q ss_pred EeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEE
Q 018784 164 CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF 243 (350)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (350)
++|++||+||.+++..++++..+.+++++.++++|++++.+.++.|.+||..++..++.+.+|++..+.++.|.. ..+
T Consensus 162 -add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k-~~f 239 (334)
T KOG0278|consen 162 -ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKK-EFF 239 (334)
T ss_pred -ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccccccCCC-ceE
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999975 999
Q ss_pred EEecCCCeEEEEEcccCeeEEee-cCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccc
Q 018784 244 IAGGEDMWVHVFDFHTGEQIGCN-KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKAS 322 (350)
Q Consensus 244 ~sg~~d~~i~v~d~~~~~~~~~~-~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (350)
++|++|..++.||..+|+.+..+ ++|.++|.|++|+|+|...|+||+||+|+||...+.+..+.- ...+....
T Consensus 240 VaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~~~~------~~~~~ed~ 313 (334)
T KOG0278|consen 240 VAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTYGLW------KCVKPEDD 313 (334)
T ss_pred EecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCchhhc------cccChhhh
Confidence 99999999999999999999886 899999999999999999999999999999998766554311 11222344
Q ss_pred cccceeeeeeEEEcccchhH
Q 018784 323 TDEVTRKIEGFHINKEGKAE 342 (350)
Q Consensus 323 ~~~~~~~i~~~~~~~~g~~~ 342 (350)
.++..+..++|.++++++-.
T Consensus 314 ~eev~s~~e~~~~~~e~~~~ 333 (334)
T KOG0278|consen 314 GEEVASPKEGFPITTEEELA 333 (334)
T ss_pred cccccccccccccCchhhhc
Confidence 56778888999998887644
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-50 Score=337.49 Aligned_cols=308 Identities=23% Similarity=0.354 Sum_probs=260.2
Q ss_pred eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~ 92 (350)
.||.++|.+++|+| +|+.|||||.|.++|+||+.+..+.++++||.+-|.|++|+||++.+|||+.||+|++||..+
T Consensus 112 ~GH~e~Vl~~~fsp---~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpkt 188 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSP---TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKT 188 (480)
T ss_pred CCCCCcEEEEEecC---CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCC
Confidence 59999999999997 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeee-e-eccccEeEEEEcC-----CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe
Q 018784 93 GDEKHS-F-EHKHIVRACAFSE-----DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (350)
Q Consensus 93 ~~~~~~-~-~h~~~V~~~~~~~-----~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 165 (350)
++++.. + .|+..|.+++|.| ...+|++++.||.++|||+..+.. ......|...|+++.|- ++.++++++
T Consensus 189 g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~-~~~lsgHT~~VTCvrwG--G~gliySgS 265 (480)
T KOG0271|consen 189 GQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC-VRTLSGHTASVTCVRWG--GEGLIYSGS 265 (480)
T ss_pred CCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE-EEEeccCccceEEEEEc--CCceEEecC
Confidence 886653 3 6999999999975 567999999999999999975443 34557899999999985 566899999
Q ss_pred CCCeEEEEECCCCceeEeecCC-CCeEEEEEe-----------cCCc-------------------------EEE-EEcC
Q 018784 166 DSGGVRLWDARSGKIVQTLETK-SPVTSAEVS-----------RDGR-------------------------YIT-TADG 207 (350)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~-----------~~~~-------------------------~l~-~~~~ 207 (350)
.|++|++|+...|++...++.+ ..|+.++.+ |.++ .|+ +++|
T Consensus 266 ~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd 345 (480)
T KOG0271|consen 266 QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDD 345 (480)
T ss_pred CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCC
Confidence 9999999999999998888865 456766654 2222 244 4567
Q ss_pred CcEEEEECCCcc-eeeeeecCCCCc-eeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEE
Q 018784 208 SSVKFWDANHFG-LVKGYNMPCNTE-SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESY 285 (350)
Q Consensus 208 ~~i~vwd~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~l 285 (350)
.++.+|+....+ ++...+.+.... .+.|+| +++++++++-|+.|++||.++|+.+.++.||-.+|+.++|+.|.++|
T Consensus 346 ~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLl 424 (480)
T KOG0271|consen 346 FTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLL 424 (480)
T ss_pred ceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEE
Confidence 899999976543 555555554444 344554 69999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccchhH
Q 018784 286 ASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAE 342 (350)
Q Consensus 286 asgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~ 342 (350)
+|||.|.++++|++++.+. ....-.+.-++-++.++|||+++
T Consensus 425 VS~SkDsTLKvw~V~tkKl---------------~~DLpGh~DEVf~vDwspDG~rV 466 (480)
T KOG0271|consen 425 VSGSKDSTLKVWDVRTKKL---------------KQDLPGHADEVFAVDWSPDGQRV 466 (480)
T ss_pred EEcCCCceEEEEEeeeeee---------------cccCCCCCceEEEEEecCCCcee
Confidence 9999999999999865543 44445555667889999999875
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-48 Score=331.35 Aligned_cols=280 Identities=23% Similarity=0.337 Sum_probs=251.6
Q ss_pred ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC--CcEEEEeeCCCeEEEeeCC
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN--ALFSASGSADFTAKLWDAL 91 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~--~~~l~s~s~Dg~v~vWd~~ 91 (350)
|-+.||..+.|+. |++.|||||.+|.+++|+......+.+|.||++.|.++.|+|. +..+||++.||++++|++.
T Consensus 173 gd~rPis~~~fS~---ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSR---DSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeec---CCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 7789999999986 9999999999999999999999999999999999999999996 6789999999999999998
Q ss_pred CCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784 92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (350)
Q Consensus 92 ~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i 170 (350)
+..++..+ .|...|..++|||+|++|+|++.|.+.++||+.+......+ .+|...|.+++|. +++.++++|+.|..-
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q-EGHs~~v~~iaf~-~DGSL~~tGGlD~~~ 327 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ-EGHSKGVFSIAFQ-PDGSLAATGGLDSLG 327 (459)
T ss_pred CCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh-cccccccceeEec-CCCceeeccCccchh
Confidence 77666665 58889999999999999999999999999999977655544 4577789999985 678899999999999
Q ss_pred EEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCc-eeEecCCCCcEEEEec
Q 018784 171 RLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGG 247 (350)
Q Consensus 171 ~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~sg~ 247 (350)
+|||+|+|+++..+..+ .+|.++.|+|+|..++++ .|++++|||++...++..+..+.+.. .+.+.|..|.+|++++
T Consensus 328 RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 328 RVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred heeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence 99999999999999865 689999999999998876 58899999999888866655554443 4556677899999999
Q ss_pred CCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784 248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 248 ~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~ 298 (350)
.|+++++|...++.++..+.||.+.|.++.++|++++++|+|.|.++++|.
T Consensus 408 yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 408 YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 999999999999999999999999999999999999999999999999995
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.5e-45 Score=310.82 Aligned_cols=282 Identities=26% Similarity=0.416 Sum_probs=241.4
Q ss_pred EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCcee-eeccCccCCeEEEEEC-----CCCcEEEEeeCCCe
Q 018784 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI-GTFEGHKGAVWSCCLD-----ANALFSASGSADFT 84 (350)
Q Consensus 11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~-~~l~gH~~~V~~v~~~-----~~~~~l~s~s~Dg~ 84 (350)
.|+||+.=|.||+++| ||+.||||+.||+|++||.++|+++ ..|.||+..|.+++|. |.+++|||+|.||+
T Consensus 152 t~KgH~~WVlcvawsP---Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~ 228 (480)
T KOG0271|consen 152 TCKGHKNWVLCVAWSP---DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS 228 (480)
T ss_pred eecCCccEEEEEEECC---CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCC
Confidence 4799999999998886 9999999999999999999998765 5899999999999985 46789999999999
Q ss_pred EEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEe---------
Q 018784 85 AKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL--------- 154 (350)
Q Consensus 85 v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~--------- 154 (350)
|+|||+..+.++..+ .|+..|+|+.|--+| ++++|+.|++|++|+..++.. ...+..|...|..++.+
T Consensus 229 vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~-~r~lkGHahwvN~lalsTdy~LRtga 306 (480)
T KOG0271|consen 229 VRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKL-CRELKGHAHWVNHLALSTDYVLRTGA 306 (480)
T ss_pred EEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhH-HHhhcccchheeeeeccchhhhhccc
Confidence 999999888877766 699999999998766 789999999999999876543 34556677778777654
Q ss_pred --CCCC------------------------cEEEEEeCCCeEEEEECCC-CceeEeec-CCCCeEEEEEecCCcEEEEEc
Q 018784 155 --HSDQ------------------------TILSSCTDSGGVRLWDARS-GKIVQTLE-TKSPVTSAEVSRDGRYITTAD 206 (350)
Q Consensus 155 --~~~~------------------------~~~~s~~~dg~i~iwd~~~-~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 206 (350)
|.+. ..+++|++|.++.+|+... .+++..+. ++.-|+.+.|+||++++++++
T Consensus 307 f~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS 386 (480)
T KOG0271|consen 307 FDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASAS 386 (480)
T ss_pred cccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEee
Confidence 1111 2589999999999999754 44665555 456799999999999998875
Q ss_pred -CCcEEEEECCCcceeeeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCE
Q 018784 207 -GSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES 284 (350)
Q Consensus 207 -~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 284 (350)
|..|++||.++++.+.++..+... +.+.+.. +.++|++|+.|.++++|++++.++...+.||.+.|+++.|+|||..
T Consensus 387 FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~r 465 (480)
T KOG0271|consen 387 FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQR 465 (480)
T ss_pred cccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCce
Confidence 899999999999988888766544 3445544 5789999999999999999999999999999999999999999999
Q ss_pred EEEecCCCcEEEec
Q 018784 285 YASGSEDGTIRIWQ 298 (350)
Q Consensus 285 lasgs~Dg~v~vw~ 298 (350)
+++|+.|..+++|.
T Consensus 466 V~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 466 VASGGKDKVLRLWR 479 (480)
T ss_pred eecCCCceEEEeec
Confidence 99999999999995
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.9e-42 Score=278.79 Aligned_cols=284 Identities=22% Similarity=0.325 Sum_probs=240.3
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC-----CCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEE
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-----TGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAK 86 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~-----~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~ 86 (350)
+.||++.|..++-.+..+ .+++++|.|.++.+|++. .|.+.+.|.||+..|..+..++++.+++|+|.|+++|
T Consensus 11 l~gh~d~Vt~la~~~~~~--~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lr 88 (315)
T KOG0279|consen 11 LEGHTDWVTALAIKIKNS--DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLR 88 (315)
T ss_pred ecCCCceEEEEEeecCCC--ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEE
Confidence 579999999998877544 499999999999999964 4777899999999999999999999999999999999
Q ss_pred EeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee-cCCCCcEEEEEEeCCC-CcEEEE
Q 018784 87 LWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSD-QTILSS 163 (350)
Q Consensus 87 vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~~~~s 163 (350)
+||+.+++....+ .|...|.+++|+++...+++|+.|++|++|++... +..... ..+.+.|.++.|+|.. +.++++
T Consensus 89 lWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs 167 (315)
T KOG0279|consen 89 LWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVS 167 (315)
T ss_pred EEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEE
Confidence 9999998876665 69999999999999999999999999999998643 222222 2237899999999875 789999
Q ss_pred EeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCc
Q 018784 164 CTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN 241 (350)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (350)
++.|++|++||+++.+....+..+ ..++.+.++|||.+.+++ .|+.+.+||++..+.+..+.......++.|.| .+
T Consensus 168 ~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fsp--nr 245 (315)
T KOG0279|consen 168 ASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSP--NR 245 (315)
T ss_pred ccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecC--Cc
Confidence 999999999999999888777654 678999999999998775 58899999999998877666555566677776 47
Q ss_pred EEEEecCCCeEEEEEcccCeeEEeec----CC-----CcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 242 IFIAGGEDMWVHVFDFHTGEQIGCNK----GH-----HGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 242 ~l~sg~~d~~i~v~d~~~~~~~~~~~----~h-----~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
+.++...+..|+|||+.++..+..+. +. .....+++|+++|..|++|-.|+.|++|.+.
T Consensus 246 ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 246 YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 88888888889999999988776553 22 2235778999999999999999999999864
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-41 Score=277.86 Aligned_cols=283 Identities=26% Similarity=0.409 Sum_probs=248.6
Q ss_pred eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (350)
Q Consensus 10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd 89 (350)
-+++||..-|+++.|++ |++.++++|.||.+.|||..+....+.+.-.+.-|.+++|+|.++++|.||-|...-|++
T Consensus 49 r~LkGH~~Ki~~~~ws~---Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWST---DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYP 125 (343)
T ss_pred EEecccccceeeeEecC---CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEe
Confidence 45799999999998876 999999999999999999999988888888889999999999999999999999999999
Q ss_pred CCCCC------eee-eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEE
Q 018784 90 ALTGD------EKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS 162 (350)
Q Consensus 90 ~~~~~------~~~-~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 162 (350)
+.+.+ ... ...|++.+.++.|.+|+ .|+|++.|.+..+||++++... .....|.+.|.++...|.+.+.++
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~-~~f~GH~gDV~slsl~p~~~ntFv 203 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQT-QVFHGHTGDVMSLSLSPSDGNTFV 203 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEE-EEecCCcccEEEEecCCCCCCeEE
Confidence 87552 112 23599999999999855 5889999999999999987654 445678999999999887899999
Q ss_pred EEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCC---CCceeEecC
Q 018784 163 SCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC---NTESASLEP 237 (350)
Q Consensus 163 s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~---~~~~~~~~~ 237 (350)
+|+-|++.++||+|.+.+++++.. .+.|+++.|.|+|.-++++ +|+++|+||+|..+.+..|..+. ...++.|+
T Consensus 204 Sg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS- 282 (343)
T KOG0286|consen 204 SGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS- 282 (343)
T ss_pred ecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc-
Confidence 999999999999999999999986 4789999999999877665 57899999999988777665432 23444554
Q ss_pred CCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784 238 KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 238 ~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~ 298 (350)
..|++|.+|..|.++.+||.-.++.+..+.||.+.|.++..+|||..++|||+|.++|||.
T Consensus 283 ~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 283 KSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 4699999999999999999999999999999999999999999999999999999999994
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.3e-40 Score=261.84 Aligned_cols=278 Identities=21% Similarity=0.257 Sum_probs=228.1
Q ss_pred ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC--eeeee-eccccEeE
Q 018784 31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD--EKHSF-EHKHIVRA 107 (350)
Q Consensus 31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~--~~~~~-~h~~~V~~ 107 (350)
.-+|||+|.|.+||+|.+.+|.|.+++..-.+.|+.+.+.|++.+||.++ -..||++|+.++. ++.++ .|++.|.+
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEE
Confidence 45899999999999999999999999997788899999999999998765 5789999998876 45555 48899999
Q ss_pred EEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-
Q 018784 108 CAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET- 186 (350)
Q Consensus 108 ~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~- 186 (350)
+.|..+|++++|||.||++||||++...... .-.+...|.++.. ++.+.-+++|..+|.|++||+++..+...+..
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR--~~~~~spVn~vvl-hpnQteLis~dqsg~irvWDl~~~~c~~~liPe 165 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQR--NYQHNSPVNTVVL-HPNQTELISGDQSGNIRVWDLGENSCTHELIPE 165 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCcccch--hccCCCCcceEEe-cCCcceEEeecCCCcEEEEEccCCccccccCCC
Confidence 9999999999999999999999998754332 2345578888865 56677788899999999999998876666543
Q ss_pred -CCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcc------eeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcc
Q 018784 187 -KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFG------LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (350)
Q Consensus 187 -~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~ 258 (350)
..++.++.+.|+|+++++++ .|.+.+|++-... ++..+..+.........+++.++|+++|.|.+++||+.+
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~ 245 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTD 245 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecC
Confidence 46899999999999998876 4789999986532 333344443333333344468999999999999999998
Q ss_pred cC-eeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCC
Q 018784 259 TG-EQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTG 312 (350)
Q Consensus 259 ~~-~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~ 312 (350)
+- +....+++|.++++..+||.|++||++||.|+.+++|++...+..-...++.
T Consensus 246 ~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~ 300 (311)
T KOG0315|consen 246 DFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHH 300 (311)
T ss_pred CceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcc
Confidence 87 5566789999999999999999999999999999999998777655555543
No 8
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-40 Score=281.55 Aligned_cols=286 Identities=24% Similarity=0.368 Sum_probs=241.1
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC---CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEe
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW 88 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~---~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vW 88 (350)
+..|++.|+=+.||+ +|++|||||.|.+..||.+.. .+..+++.||..+|.-+.|+||.+++++++.|..+++|
T Consensus 220 l~~htdEVWfl~FS~---nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSH---NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred HhhCCCcEEEEEEcC---CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 578999999888886 999999999999999998643 35578999999999999999999999999999999999
Q ss_pred eCCCCCeeeeeecc--ccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784 89 DALTGDEKHSFEHK--HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD 166 (350)
Q Consensus 89 d~~~~~~~~~~~h~--~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~ 166 (350)
|+.++..++.+.+. ..+.+++|.|||..+++|+.|+++..||++... .....+.....|.+++..+++..+++.+ .
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~-~ 374 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVT-V 374 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEe-c
Confidence 99999998888765 789999999999999999999999999997432 2222233345688999887666666655 7
Q ss_pred CCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCc---eeEecCCCCcE
Q 018784 167 SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTE---SASLEPKLGNI 242 (350)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 242 (350)
|..|++++.++......+..+.++++.+++.+++++.+. .+..+++||+.....++.|..+.... -.+|-..+...
T Consensus 375 d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~f 454 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKF 454 (519)
T ss_pred ccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcce
Confidence 789999998877776677888999999999999998765 57899999999888888776654332 22233334578
Q ss_pred EEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCC-CEEEEecCCCcEEEecCCCC
Q 018784 243 FIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGG-ESYASGSEDGTIRIWQTNPP 302 (350)
Q Consensus 243 l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~-~~lasgs~Dg~v~vw~~~~~ 302 (350)
+++||+|++|++|+..+|+++..+.||...|++++|+|.. .+|||+|.||+||||.....
T Consensus 455 iaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 455 IASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 9999999999999999999999999999999999999975 56899999999999976544
No 9
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.3e-40 Score=283.02 Aligned_cols=279 Identities=24% Similarity=0.400 Sum_probs=239.5
Q ss_pred CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee
Q 018784 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK 96 (350)
Q Consensus 17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~ 96 (350)
-+|..|.+. |+|+.|++|+..|...+|+..+......+..|..+|+++.|++++.+++||+.+|.||+|+......+
T Consensus 97 c~V~~v~Wt---PeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk 173 (464)
T KOG0284|consen 97 CPVNVVRWT---PEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVK 173 (464)
T ss_pred cceeeEEEc---CCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhH
Confidence 378888666 59999999999999999999777777778999999999999999999999999999999998776655
Q ss_pred eeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784 97 HSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (350)
Q Consensus 97 ~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~ 175 (350)
.... |...|++++|+|+...+++++.|++|+|||...+.... .+.+|.-.|.+++|.| ...++++++.|+.|++||.
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~-vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDp 251 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER-VLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDP 251 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhh-eeccCCCCcceeccCC-ccceeEEccCCceeEeecC
Confidence 5555 45899999999999999999999999999987654433 3467788899999965 5668899999999999999
Q ss_pred CCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCC-CCceeEecCCCCcEEEEecCCCeE
Q 018784 176 RSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWV 252 (350)
Q Consensus 176 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~d~~i 252 (350)
++++++.++.. .+.|..+.|++++.+|+++ .|..++++|+|+.+.+..+..+. ......+.|-...+|.+|+.|+.|
T Consensus 252 rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 252 RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 99999999875 5789999999999988765 58899999999877776665443 345666788888999999999999
Q ss_pred EEEEcccCeeEEee-cCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 253 HVFDFHTGEQIGCN-KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 253 ~v~d~~~~~~~~~~-~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
..|.+...+++..+ .+|...|++|+|+|-|.+|++|+.|.++++|...
T Consensus 332 vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 332 VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred EEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99999855555444 5899999999999999999999999999999764
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-39 Score=260.87 Aligned_cols=250 Identities=28% Similarity=0.381 Sum_probs=213.0
Q ss_pred ccccceeE-eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC
Q 018784 4 RKVAVPLV-CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD 82 (350)
Q Consensus 4 ~~~~~~~~-~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D 82 (350)
-++.+|.. +.||+..|..+..++ ||.+.+++|.|+++|+||+++++....|.||+..|.+++|++|.+.++|||.|
T Consensus 50 ~~~G~~~r~~~GHsH~v~dv~~s~---dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrD 126 (315)
T KOG0279|consen 50 IKYGVPVRRLTGHSHFVSDVVLSS---DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRD 126 (315)
T ss_pred cccCceeeeeeccceEecceEEcc---CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCc
Confidence 45666665 579999999998876 99999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeeCCCCCeeeeee--ccccEeEEEEcCC--CCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCC
Q 018784 83 FTAKLWDALTGDEKHSFE--HKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158 (350)
Q Consensus 83 g~v~vWd~~~~~~~~~~~--h~~~V~~~~~~~~--~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 158 (350)
.+|++|+........... +++.|.|+.|+|+ ..+|+++|+|++||+||+...+..... ..|.+.+..++++| |+
T Consensus 127 kTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~-~gh~~~v~t~~vSp-DG 204 (315)
T KOG0279|consen 127 KTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF-IGHSGYVNTVTVSP-DG 204 (315)
T ss_pred ceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc-ccccccEEEEEECC-CC
Confidence 999999986554333333 3788999999998 689999999999999999876554333 45788999999875 77
Q ss_pred cEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCC--------CC
Q 018784 159 TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC--------NT 230 (350)
Q Consensus 159 ~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~--------~~ 230 (350)
.++++|+.||.+.+||++.++.+..+.+...|.+++|+|+..+|+.+.+..|+|||+.+..++..+.... .+
T Consensus 205 slcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~ 284 (315)
T KOG0279|consen 205 SLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDP 284 (315)
T ss_pred CEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCc
Confidence 8899999999999999999999999999999999999999999999988899999999988776655422 12
Q ss_pred ceeEe-cCCCCcEEEEecCCCeEEEEEcc
Q 018784 231 ESASL-EPKLGNIFIAGGEDMWVHVFDFH 258 (350)
Q Consensus 231 ~~~~~-~~~~~~~l~sg~~d~~i~v~d~~ 258 (350)
.+.++ ...+|..|.+|..|+.|++|.+.
T Consensus 285 ~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 285 ICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 22222 23468999999999999999864
No 11
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-39 Score=261.20 Aligned_cols=289 Identities=30% Similarity=0.601 Sum_probs=245.0
Q ss_pred ceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEE
Q 018784 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKL 87 (350)
Q Consensus 8 ~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~v 87 (350)
+|+.++||+.|++-+.|+. +|.+|.|++.|.++.+|-..+|+.+.+++||+++|+++.++.+...++||+.|.++++
T Consensus 2 rpi~l~GHERplTqiKyN~---eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL 78 (327)
T KOG0643|consen 2 RPILLQGHERPLTQIKYNR---EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL 78 (327)
T ss_pred CccccccCccccceEEecC---CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence 5788999999999999996 9999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCeeeeeeccccEeEEEEcCCCCeEEEee-----CCCeEEEEECCCCC------CCCeeecCCCCcEEEEEEeCC
Q 018784 88 WDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG-----FEKILRIFDLNRPD------APPREVGNSSGSIRTVAWLHS 156 (350)
Q Consensus 88 Wd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~-----~d~~v~vwd~~~~~------~~~~~~~~~~~~v~~~~~~~~ 156 (350)
||+++|+++..+.-+..|+.+.|+++|++++... ..+.|.++|+.... .+...+..+...++.+.|.+-
T Consensus 79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l 158 (327)
T KOG0643|consen 79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPL 158 (327)
T ss_pred EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeeccc
Confidence 9999999999999999999999999999887654 34679999987432 223334556678888889865
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceeEee-c-CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCcee
Q 018784 157 DQTILSSCTDSGGVRLWDARSGKIVQTL-E-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESA 233 (350)
Q Consensus 157 ~~~~~~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~ 233 (350)
+..+++|.+||.|..||+++|+.+... + +...|+.++++++..+++++ .|.+-++||.++..+++++.......+.
T Consensus 159 -~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~a 237 (327)
T KOG0643|consen 159 -GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTA 237 (327)
T ss_pred -CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccce
Confidence 456778999999999999998654433 3 45689999999999887765 5889999999999999999988888888
Q ss_pred EecCCCCcEEEEecCCCe-------------EEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 234 SLEPKLGNIFIAGGEDMW-------------VHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 234 ~~~~~~~~~l~sg~~d~~-------------i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
.+.|....+++-|+++.. -+.|++-..+++...++|-++|++++|+|+|+.++||++||.|++.-.+
T Consensus 238 aisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 238 AISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 888877777777776532 2344444445667789999999999999999999999999999998543
No 12
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.5e-38 Score=263.64 Aligned_cols=292 Identities=20% Similarity=0.321 Sum_probs=245.0
Q ss_pred EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (350)
Q Consensus 11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~ 90 (350)
|+.||.+=|.++++.| ....++|||.|++++|||+.+|++..+|.||...|+.+++++...++++++.|+.|+.||+
T Consensus 146 Vi~gHlgWVr~vavdP---~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL 222 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDP---GNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL 222 (460)
T ss_pred hhhhccceEEEEeeCC---CceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence 4589999999999987 5679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeee-eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784 91 LTGDEKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (350)
Q Consensus 91 ~~~~~~~-~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~ 169 (350)
+.++.++ +..|-..|+|++.+|.-..|++|+.|.++||||+.+... ...+.+|...|..+.+.+.+. .+++|+.|++
T Consensus 223 e~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~-V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~t 300 (460)
T KOG0285|consen 223 EYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS-VHVLSGHTNPVASVMCQPTDP-QVITGSHDST 300 (460)
T ss_pred hhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccce-EEEecCCCCcceeEEeecCCC-ceEEecCCce
Confidence 9887554 557999999999999999999999999999999986543 445577899999998876555 4678999999
Q ss_pred EEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC
Q 018784 170 VRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248 (350)
Q Consensus 170 i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 248 (350)
|++||++.|+.+.++.++ ..+.+++.+|....+++++-..|+-|++..+..+..+..+.. ....+......++++|+.
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~-iintl~~nsD~v~~~G~d 379 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNA-IINTLSVNSDGVLVSGGD 379 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccc-eeeeeeeccCceEEEcCC
Confidence 999999999988888754 578999999999999888888999999988776665444332 222333334689999999
Q ss_pred CCeEEEEEcccCeeEEeec-----C---CCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCC
Q 018784 249 DMWVHVFDFHTGEQIGCNK-----G---HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENH 308 (350)
Q Consensus 249 d~~i~v~d~~~~~~~~~~~-----~---h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~ 308 (350)
.+.|..||.++|-.....+ | -+..|++.+|-..|..|++|..|.+|++|.-+...-.|.|
T Consensus 380 ng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~aT~Eth 447 (460)
T KOG0285|consen 380 NGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHATEETH 447 (460)
T ss_pred ceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecccccCcccC
Confidence 9999999999886543321 1 2456899999999999999999999999976544444444
No 13
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.2e-39 Score=276.63 Aligned_cols=243 Identities=22% Similarity=0.301 Sum_probs=214.0
Q ss_pred eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (350)
Q Consensus 10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd 89 (350)
.+++||+..|.++.|+|.. ++.-|||++.||+++||+.+...++..|+||...|-.++|+|+|++|+|++.|.+-|+||
T Consensus 211 ~~l~gH~~~v~~~~fhP~~-~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD 289 (459)
T KOG0272|consen 211 QTLRGHTSRVGAAVFHPVD-SDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWD 289 (459)
T ss_pred EEEeccccceeeEEEccCC-CccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcc
Confidence 3468999999999999954 466899999999999999999899999999999999999999999999999999999999
Q ss_pred CCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784 90 ALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168 (350)
Q Consensus 90 ~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg 168 (350)
+.++.+.... .|...|.+|+|+|||.+++|||.|..-||||+.++.....+ ..|...|.+++|+| .+..+++|+.|+
T Consensus 290 ~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L-~gH~k~I~~V~fsP-NGy~lATgs~Dn 367 (459)
T KOG0272|consen 290 LETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFL-AGHIKEILSVAFSP-NGYHLATGSSDN 367 (459)
T ss_pred cccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEe-cccccceeeEeECC-CceEEeecCCCC
Confidence 9998866554 69999999999999999999999999999999988776555 44889999999986 567889999999
Q ss_pred eEEEEECCCCceeEeecCC-CCeEEEEEec-CCcEEEEE-cCCcEEEEECCCcceeeeeecCCCC-ceeEecCCCCcEEE
Q 018784 169 GVRLWDARSGKIVQTLETK-SPVTSAEVSR-DGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFI 244 (350)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~-~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 244 (350)
+++|||+|..+++.++..+ +-|+.++|.| .|++|+++ -|+++++|..+++.+++.+..+... .++...+ +++.++
T Consensus 368 t~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~ 446 (459)
T KOG0272|consen 368 TCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIA 446 (459)
T ss_pred cEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEE
Confidence 9999999999988888765 5688999998 67777665 5999999999999999988776544 3444444 689999
Q ss_pred EecCCCeEEEEE
Q 018784 245 AGGEDMWVHVFD 256 (350)
Q Consensus 245 sg~~d~~i~v~d 256 (350)
+++.|++|++|.
T Consensus 447 t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 447 TSSFDRTIKLWR 458 (459)
T ss_pred EeccCceeeecc
Confidence 999999999994
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.7e-37 Score=280.47 Aligned_cols=335 Identities=26% Similarity=0.397 Sum_probs=261.2
Q ss_pred ccceeEe----eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCce--eeeccCccCCeEEEEECCCCcEEEEe
Q 018784 6 VAVPLVC----HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IGTFEGHKGAVWSCCLDANALFSASG 79 (350)
Q Consensus 6 ~~~~~~~----~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~--~~~l~gH~~~V~~v~~~~~~~~l~s~ 79 (350)
...|++. .||.+.|.++.|+. |++++++||.|.++|||.+...+- ...|.||++.|.++.|..+...+.|-
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~---DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tv 207 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSD---DSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTV 207 (893)
T ss_pred ccCcceEeeeecCCccceeEEEecc---CCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEE
Confidence 4567775 49999999998886 999999999999999999876554 66889999999999999999999999
Q ss_pred eCCCeEEEeeCCC-----------------------CCe-----------eeeeec-cccEeEEEEcCCCCeEEEeeCCC
Q 018784 80 SADFTAKLWDALT-----------------------GDE-----------KHSFEH-KHIVRACAFSEDTHLLLTGGFEK 124 (350)
Q Consensus 80 s~Dg~v~vWd~~~-----------------------~~~-----------~~~~~h-~~~V~~~~~~~~~~~l~sg~~d~ 124 (350)
+.||.+.+|.... +++ ++.++. ...|++++||+....|++|-..|
T Consensus 208 skdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG 287 (893)
T KOG0291|consen 208 SKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSG 287 (893)
T ss_pred ecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCC
Confidence 9999999997651 111 111111 14566666666666666666666
Q ss_pred eEEEEECCC-------------------------------------------CCCCCeeecCCCCcEEEEEEeCCCCcEE
Q 018784 125 ILRIFDLNR-------------------------------------------PDAPPREVGNSSGSIRTVAWLHSDQTIL 161 (350)
Q Consensus 125 ~v~vwd~~~-------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 161 (350)
...+|.+.. ..-..+ .+.|...+.+++++| |+.++
T Consensus 288 ~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK-QQgH~~~i~~l~YSp-Dgq~i 365 (893)
T KOG0291|consen 288 EFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK-QQGHSDRITSLAYSP-DGQLI 365 (893)
T ss_pred eeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee-ccccccceeeEEECC-CCcEE
Confidence 655555432 111111 245778899999885 56688
Q ss_pred EEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCceeEec-CC
Q 018784 162 SSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLE-PK 238 (350)
Q Consensus 162 ~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~ 238 (350)
++|++||+|++||..++-|+.++.. .+.++.++|+..++.+.++ -||+||.||+..++..++++.|......++. .+
T Consensus 366 aTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~ 445 (893)
T KOG0291|consen 366 ATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP 445 (893)
T ss_pred EeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC
Confidence 8999999999999999999988875 5789999999999877655 5999999999999999999988765433322 23
Q ss_pred CCcEEEEecCCCe-EEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC--Ccc----------
Q 018784 239 LGNIFIAGGEDMW-VHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP--NHE---------- 305 (350)
Q Consensus 239 ~~~~l~sg~~d~~-i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~--~~~---------- 305 (350)
.|.++++|+.|.. |++|++.+|+++..+.||++||.+++|+|++..|||||+|.+||+||+-.. ..+
T Consensus 446 sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~ 525 (893)
T KOG0291|consen 446 SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLA 525 (893)
T ss_pred CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeE
Confidence 5899999999985 999999999999999999999999999999999999999999999997533 111
Q ss_pred --------cCCCCCCCccccccccccccceeeeeeEEEcccchhHhhh
Q 018784 306 --------ENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEKQ 345 (350)
Q Consensus 306 --------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~ 345 (350)
+......+++...+......+...|+|......||.+.|-
T Consensus 526 vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~ 573 (893)
T KOG0291|consen 526 VSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDR 573 (893)
T ss_pred EEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccce
Confidence 1111223455556666666788889999999999888775
No 15
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.9e-37 Score=260.54 Aligned_cols=287 Identities=15% Similarity=0.251 Sum_probs=239.1
Q ss_pred cceeE-eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeE
Q 018784 7 AVPLV-CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85 (350)
Q Consensus 7 ~~~~~-~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v 85 (350)
+-+++ |.+|+++|.+++.+| +..++|||+.|....||+..+|+++..+.||+.+|.++.|+.++.+||||+.+|.|
T Consensus 54 DdS~~tF~~H~~svFavsl~P---~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v 130 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHP---NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKV 130 (399)
T ss_pred ccceeehhhcCCceEEEEeCC---CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccE
Confidence 44555 579999999999887 67799999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCeeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE
Q 018784 86 KLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (350)
Q Consensus 86 ~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~ 164 (350)
+||+..++..+..+. --+.+..+.|||-+.+|+.|+.||.+.+|.+.+. ...+....|...+.+=.|.|+ ++.++++
T Consensus 131 ~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pd-GKr~~tg 208 (399)
T KOG0296|consen 131 LVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPD-GKRILTG 208 (399)
T ss_pred EEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCC-CceEEEE
Confidence 999999999888875 4456888999999999999999999999999865 344555668888888888865 6777889
Q ss_pred eCCCeEEEEECCCCceeEeecCC----------C-------------CeE-------EEEEecCC---------------
Q 018784 165 TDSGGVRLWDARSGKIVQTLETK----------S-------------PVT-------SAEVSRDG--------------- 199 (350)
Q Consensus 165 ~~dg~i~iwd~~~~~~~~~~~~~----------~-------------~v~-------~~~~~~~~--------------- 199 (350)
..||+|++||+.+++++..+... + .+. .+.+..++
T Consensus 209 y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~es 288 (399)
T KOG0296|consen 209 YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDES 288 (399)
T ss_pred ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhh
Confidence 99999999999999988777510 0 000 00111110
Q ss_pred ----------cEEEEE-cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC
Q 018784 200 ----------RYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG 268 (350)
Q Consensus 200 ----------~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~ 268 (350)
.+++++ -||+|-+||+.+..+......+.....+.+.+ ..+|++++.+|.|+.||.++|++..++.|
T Consensus 289 ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 289 VESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTG 366 (399)
T ss_pred hhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEec
Confidence 122333 48999999998877766666666666666665 57899999999999999999999999999
Q ss_pred CCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 269 HHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 269 h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
|...|.+++++|+.++++|+|.|++.+|+++.
T Consensus 367 H~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 367 HQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999999999999999999999999763
No 16
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.2e-39 Score=279.97 Aligned_cols=289 Identities=22% Similarity=0.374 Sum_probs=242.5
Q ss_pred cccceeE----eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-CceeeeccCccCCeEEEEECCCCcEEEEe
Q 018784 5 KVAVPLV----CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASG 79 (350)
Q Consensus 5 ~~~~~~~----~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~l~s~ 79 (350)
+|++|.. ++||+..|+++.|.|. .+++|++++.|+.|+||++.. ++++++|.||..+|..++|+.+|..+.|+
T Consensus 199 rc~~Pkk~~~~~~gH~kgvsai~~fp~--~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~ 276 (503)
T KOG0282|consen 199 RCYLPKKLSHNLSGHTKGVSAIQWFPK--KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSA 276 (503)
T ss_pred eeeccHhheeeccCCccccchhhhccc--eeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeee
Confidence 5556654 3799999999998873 578999999999999999866 99999999999999999999999999999
Q ss_pred eCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCC
Q 018784 80 SADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158 (350)
Q Consensus 80 s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 158 (350)
|.|+.|++||+++|++...+.-...+.|+.|+|++ +.+++|+.|+.|+.||++.++. ......|-+.|..+.|.+ ++
T Consensus 277 sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-vqeYd~hLg~i~~i~F~~-~g 354 (503)
T KOG0282|consen 277 SFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-VQEYDRHLGAILDITFVD-EG 354 (503)
T ss_pred ecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-HHHHHhhhhheeeeEEcc-CC
Confidence 99999999999999999999888889999999998 8899999999999999987663 445577888999999986 45
Q ss_pred cEEEEEeCCCeEEEEECCCCceeEeecCC--CCeEEEEEecCCcEEEEE-cCCcEEEEECCCc------ceeeeeecCCC
Q 018784 159 TILSSCTDSGGVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRYITTA-DGSSVKFWDANHF------GLVKGYNMPCN 229 (350)
Q Consensus 159 ~~~~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~------~~~~~~~~~~~ 229 (350)
+.+++.++|++++||+.+.+..+..+... ....++..+|++.++++- -+..|.++.+... +....+..+..
T Consensus 355 ~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy 434 (503)
T KOG0282|consen 355 RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY 434 (503)
T ss_pred ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCc
Confidence 56677899999999999988766555432 345678889999998774 4778888875431 12222333333
Q ss_pred CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCC-CEEEEecCCCcEEEec
Q 018784 230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGG-ESYASGSEDGTIRIWQ 298 (350)
Q Consensus 230 ~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~-~~lasgs~Dg~v~vw~ 298 (350)
...+.|+| +|++|++|..||.+.+||.++-+++..+++|..++..+.|+|.. ..+||++.||.|++|+
T Consensus 435 s~~v~fSp-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 435 SCQVDFSP-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eeeEEEcC-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 44555665 69999999999999999999999999999999999999999985 4589999999999996
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-38 Score=264.83 Aligned_cols=282 Identities=22% Similarity=0.349 Sum_probs=243.4
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~ 91 (350)
+-||..+|+-+.|+| +-.+++++|.|.+|++||..+|++...|+||+++|..++|+..|+++||+|.|-.+++||..
T Consensus 104 l~g~r~~vt~v~~hp---~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~ 180 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHP---SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFD 180 (406)
T ss_pred hhccccceeeeeecc---CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHH
Confidence 458999999999998 55589999999999999999999999999999999999999999999999999999999987
Q ss_pred CC-Cee-eeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784 92 TG-DEK-HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (350)
Q Consensus 92 ~~-~~~-~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~ 169 (350)
+. +++ ....|...|.++.|-|.|.++++++.|.+|++|++.++.... ...+|...+..+... .|+.++++|+.|.+
T Consensus 181 ~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~-t~~~h~ewvr~v~v~-~DGti~As~s~dqt 258 (406)
T KOG0295|consen 181 TFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK-TFPGHSEWVRMVRVN-QDGTIIASCSNDQT 258 (406)
T ss_pred HHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEE-eccCchHhEEEEEec-CCeeEEEecCCCce
Confidence 63 232 334788899999999999999999999999999999876643 445677788888754 68899999999999
Q ss_pred EEEEECCCCceeEeecC-CCCeEEEEEecC---------------CcEEEE-EcCCcEEEEECCCcceeeeeecCCCCce
Q 018784 170 VRLWDARSGKIVQTLET-KSPVTSAEVSRD---------------GRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTES 232 (350)
Q Consensus 170 i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~---------------~~~l~~-~~~~~i~vwd~~~~~~~~~~~~~~~~~~ 232 (350)
|++|-+.++++...+.. ..++..++|.|. +.++.+ +.|++|++||+.++.++.++..+.+-..
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence 99999999977666653 457777777652 135544 4689999999999999988887766544
Q ss_pred -eEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784 233 -ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (350)
Q Consensus 233 -~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~ 299 (350)
+.+.| .|+|++++..|+++++||++++++..++..|+.-|+++.|+.+..+++||+-|.++++|..
T Consensus 339 ~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 339 GVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 44554 6999999999999999999999999999999999999999999999999999999999964
No 18
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5.1e-37 Score=251.91 Aligned_cols=286 Identities=24% Similarity=0.343 Sum_probs=235.0
Q ss_pred ccceeE-eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC-CCceeeeccCccCCeEEEEECCCCcEEEEeeCCC
Q 018784 6 VAVPLV-CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-TGDWIGTFEGHKGAVWSCCLDANALFSASGSADF 83 (350)
Q Consensus 6 ~~~~~~-~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~-~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg 83 (350)
+..|+. +.||++.|+.+.|+| +|.++|||+.|..|.+|+.. ..+-...++||+++|..+.+..++..++|+|.|.
T Consensus 36 l~ap~m~l~gh~geI~~~~F~P---~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk 112 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGEIYTIKFHP---DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK 112 (338)
T ss_pred ccchhhhcCCCcceEEEEEECC---CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCc
Confidence 444544 369999999999997 99999999999999999953 3444567889999999999999999999999999
Q ss_pred eEEEeeCCCCCeeeee-eccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEE
Q 018784 84 TAKLWDALTGDEKHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL 161 (350)
Q Consensus 84 ~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 161 (350)
+|+.||.++++....+ .|...|+++.-+.-| .++.+++.|+++|+||+++...... ...+-.++++.|.. ....+
T Consensus 113 ~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t--~~~kyqltAv~f~d-~s~qv 189 (338)
T KOG0265|consen 113 TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKT--FENKYQLTAVGFKD-TSDQV 189 (338)
T ss_pred eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhc--cccceeEEEEEecc-cccce
Confidence 9999999999987776 588899998855444 5667899999999999986544322 22355788999874 44456
Q ss_pred EEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCcc----eeeeeecCC-----CC
Q 018784 162 SSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG----LVKGYNMPC-----NT 230 (350)
Q Consensus 162 ~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~----~~~~~~~~~-----~~ 230 (350)
.+|+-|+.|++||++.+.....+.++ .+|+.+..+++|.++.+- -+.++++||.+-+. +++-+.... +.
T Consensus 190 ~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 190 ISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred eeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 78889999999999999999988865 689999999999887654 48899999998653 344333322 23
Q ss_pred ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784 231 ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 231 ~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~ 298 (350)
..+++.| ++..+.+|+.|+.+++||......+..+.||.+.|.++.|+|..++|.+++.|.+|++=.
T Consensus 270 L~cswsp-~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 270 LKCSWSP-NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ceeeccC-CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 3455555 478889999999999999999899999999999999999999999999999999998843
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.2e-37 Score=284.01 Aligned_cols=282 Identities=29% Similarity=0.436 Sum_probs=240.9
Q ss_pred ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc--eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC-
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA- 90 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~--~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~- 90 (350)
-|...|.++.|++ +|+++++++.|+.+++|+.++.+ .+.++.+|...|..++|+++++++++++.|++|||||+
T Consensus 157 ~~~~sv~~~~fs~---~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 157 HECPSVTCVDFSP---DGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred cccCceEEEEEcC---CCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 3488999998886 99999999999999999998888 78888999999999999999999999999999999999
Q ss_pred CCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784 91 LTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (350)
Q Consensus 91 ~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~ 169 (350)
..+....++ .|...|++++|+|+++++++|+.|++|++||+..++. ...+..|...|..++|.+ ++.++++++.|+.
T Consensus 234 ~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~-~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~ 311 (456)
T KOG0266|consen 234 DDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGEC-VRKLKGHSDGISGLAFSP-DGNLLVSASYDGT 311 (456)
T ss_pred CCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeE-EEeeeccCCceEEEEECC-CCCEEEEcCCCcc
Confidence 444666666 6999999999999999999999999999999987443 455677888999999875 5566777788999
Q ss_pred EEEEECCCCc--eeEeecCC--C-CeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCceeE---ecCCCC
Q 018784 170 VRLWDARSGK--IVQTLETK--S-PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESAS---LEPKLG 240 (350)
Q Consensus 170 i~iwd~~~~~--~~~~~~~~--~-~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~ 240 (350)
|++||+.++. ++..+... . ++..++|+|+++++.++ .|+.+++||++....+..+..+.....+. .....+
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCC
Confidence 9999999998 45555432 2 68999999999988766 46799999999988887776655432222 223468
Q ss_pred cEEEEecCCCeEEEEEcccCeeEEeecCC-CcCEEEEEEcCCCCEEEEec--CCCcEEEecCC
Q 018784 241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGH-HGPVHCVRFSPGGESYASGS--EDGTIRIWQTN 300 (350)
Q Consensus 241 ~~l~sg~~d~~i~v~d~~~~~~~~~~~~h-~~~v~~l~~sp~~~~lasgs--~Dg~v~vw~~~ 300 (350)
.++++|+.|+.|++||+.++..+..+.+| ...+..++++|...++++++ .|+.|++|..+
T Consensus 392 ~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999999999999999999999 88999999999999999988 79999999754
No 20
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.1e-35 Score=259.43 Aligned_cols=281 Identities=32% Similarity=0.551 Sum_probs=238.7
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~ 91 (350)
+++|.++|.++.|+| ++.+|++++.|+.+++|+..+++....+.+|...+..+.+.+++.++++++.||.|++|+..
T Consensus 5 ~~~h~~~i~~~~~~~---~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 5 LKGHTGGVTCVAFSP---DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred hcccCCCEEEEEEcC---CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 479999999999987 88999999999999999999998888999999999999999999999999999999999998
Q ss_pred CCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784 92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (350)
Q Consensus 92 ~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i 170 (350)
+++....+ .|...+.++.|+|++.++++++.|+.+++||+.+.... .....|...+.++.|.+. +.++++++.|+.|
T Consensus 82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i 159 (289)
T cd00200 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL-TTLRGHTDWVNSVAFSPD-GTFVASSSQDGTI 159 (289)
T ss_pred cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE-EEeccCCCcEEEEEEcCc-CCEEEEEcCCCcE
Confidence 86655554 47778999999999999998888999999999754332 333457778999998865 6677777778999
Q ss_pred EEEECCCCceeEeecCC-CCeEEEEEecCCcEE-EEEcCCcEEEEECCCcceeeeeecCC-CCceeEecCCCCcEEEEec
Q 018784 171 RLWDARSGKIVQTLETK-SPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGG 247 (350)
Q Consensus 171 ~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~~~~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~sg~ 247 (350)
++||+++++.+..+..+ ..+..+.++|+++.+ +++.++.|++||++....+..+..+. ....+.+.+. +.++++++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~ 238 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD-GYLLASGS 238 (289)
T ss_pred EEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCC-CcEEEEEc
Confidence 99999988887777654 489999999999655 45568999999999877776663332 3445556554 78888888
Q ss_pred CCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784 248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 248 ~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~ 298 (350)
.|+.|++||+.+++....+..|...|.+++|+|++++|++++.|+.|++|+
T Consensus 239 ~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 239 EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred CCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 899999999999998888889999999999999999999999999999996
No 21
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.8e-35 Score=257.82 Aligned_cols=306 Identities=21% Similarity=0.282 Sum_probs=237.5
Q ss_pred eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeecc---CccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE---GHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~---gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd 89 (350)
+.|+..|.++.|+| ||.++||++.|+++.|||..+|+.+..|+ +|+++|++++|+||+..++|+|.|.++||||
T Consensus 187 r~HskFV~~VRysP---DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 187 REHSKFVNCVRYSP---DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred cccccceeeEEECC---CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence 68999999999997 99999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CCCCCeeeee--------------------------------------------eccccEeEEEEcCCCCeEEEeeCCCe
Q 018784 90 ALTGDEKHSF--------------------------------------------EHKHIVRACAFSEDTHLLLTGGFEKI 125 (350)
Q Consensus 90 ~~~~~~~~~~--------------------------------------------~h~~~V~~~~~~~~~~~l~sg~~d~~ 125 (350)
+.+++...++ .|...|+++..+|++++|++|+.||.
T Consensus 264 Vs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~ 343 (603)
T KOG0318|consen 264 VSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGH 343 (603)
T ss_pred eeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCce
Confidence 8766542221 17889999999999999999999999
Q ss_pred EEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEe--ecCCCCeEEEEEecCCcEEE
Q 018784 126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT--LETKSPVTSAEVSRDGRYIT 203 (350)
Q Consensus 126 v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~ 203 (350)
|.-|+..++..-...-..|...|..++....+ .+.+++.|.++++.++........ .+...+...++..+++.+++
T Consensus 344 I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~--~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~av 421 (603)
T KOG0318|consen 344 INSWDSGSGTSDRLAGKGHTNQIKGMAASESG--ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAV 421 (603)
T ss_pred EEEEecCCccccccccccccceEEEEeecCCC--cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEE
Confidence 99999987765544446788899998865433 366778888999998865433222 23333344788888876666
Q ss_pred EEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCee--EEeecCCCcCEEEEEEcCC
Q 018784 204 TADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ--IGCNKGHHGPVHCVRFSPG 281 (350)
Q Consensus 204 ~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~--~~~~~~h~~~v~~l~~sp~ 281 (350)
......|.+..-.+. +......-......+++ ++..+++|++|++|++|.+..+.. ...+..|.++|++++||||
T Consensus 422 v~~~~~iv~l~~~~~--~~~~~~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd 498 (603)
T KOG0318|consen 422 VACISDIVLLQDQTK--VSSIPIGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPD 498 (603)
T ss_pred EEecCcEEEEecCCc--ceeeccccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCC
Confidence 665555555542221 11111112233444444 689999999999999999986553 3456789999999999999
Q ss_pred CCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccch
Q 018784 282 GESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGK 340 (350)
Q Consensus 282 ~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~ 340 (350)
+.|||+|...+.|.+|++...+.. .....-++++|.++.|+|+-+
T Consensus 499 ~~yla~~Da~rkvv~yd~~s~~~~--------------~~~w~FHtakI~~~aWsP~n~ 543 (603)
T KOG0318|consen 499 GAYLAAGDASRKVVLYDVASREVK--------------TNRWAFHTAKINCVAWSPNNK 543 (603)
T ss_pred CcEEEEeccCCcEEEEEcccCcee--------------cceeeeeeeeEEEEEeCCCce
Confidence 999999999999999998654320 111234788899999988865
No 22
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=4e-38 Score=263.12 Aligned_cols=277 Identities=19% Similarity=0.329 Sum_probs=226.3
Q ss_pred ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~ 93 (350)
...+.|+|+.|. |+ .+++|..|++|+|||..+.++++.|.||+++|.|+.+. .++++|||.|.+|+|||.+++
T Consensus 195 e~skgVYClQYD----D~-kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 195 ENSKGVYCLQYD----DE-KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred ccCCceEEEEec----ch-hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCC
Confidence 357789999986 33 67999999999999999999999999999999888874 559999999999999999999
Q ss_pred Ceeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC--eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784 94 DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (350)
Q Consensus 94 ~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i 170 (350)
+++.++ .|...|..+.|+ ..++++++.|.++++||+..+.... ..+.+|...|..+.|. .+++++++.|++|
T Consensus 268 e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTi 342 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTI 342 (499)
T ss_pred chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc---cceEEEecCCceE
Confidence 988775 688999999998 4589999999999999998765321 2345788889888874 4589999999999
Q ss_pred EEEECCCCceeEeecCCC-CeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCC-ceeEecCCCCcEEEEec
Q 018784 171 RLWDARSGKIVQTLETKS-PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGG 247 (350)
Q Consensus 171 ~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~ 247 (350)
++|++.+++.+.++..+. .|.++ ...+++++++ +|.+||+||+..+.+++.+..+... .++-| +.+.+++|+
T Consensus 343 kvW~~st~efvRtl~gHkRGIACl--QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF---d~krIVSGa 417 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSGA 417 (499)
T ss_pred EEEeccceeeehhhhcccccceeh--hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee---cCceeeecc
Confidence 999999999999998764 44333 3467887765 5889999999999988877665433 23333 357899999
Q ss_pred CCCeEEEEEcccCee---------EEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCC
Q 018784 248 EDMWVHVFDFHTGEQ---------IGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHS 309 (350)
Q Consensus 248 ~d~~i~v~d~~~~~~---------~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~ 309 (350)
.||+|++||+..+.. +.++..|++.|..+.| |...+++++.|.+|.|||.......+...
T Consensus 418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~~~~~ 486 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPSAAEE 486 (499)
T ss_pred ccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcccccc
Confidence 999999999987643 3455679999999999 55678999999999999987665554443
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1e-35 Score=241.13 Aligned_cols=280 Identities=21% Similarity=0.341 Sum_probs=219.3
Q ss_pred EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC---Cceeeec-cCccCCeEEEEECCCCcEEEEeeCCCeEE
Q 018784 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GDWIGTF-EGHKGAVWSCCLDANALFSASGSADFTAK 86 (350)
Q Consensus 11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~---~~~~~~l-~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~ 86 (350)
.+.||++.++.++++|.. |.+|||+|.|+.||||+... ..+...| ++|+..|++++|+|.|++||+||.|.++-
T Consensus 9 ~~~gh~~r~W~~awhp~~--g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGK--GVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred eecCCCCcEEEEEeccCC--ceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 358999999999999832 77999999999999999873 5566666 47999999999999999999999999999
Q ss_pred EeeCCCCC--eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCC--CCeeecCCCCcEEEEEEeCCCCcEE
Q 018784 87 LWDALTGD--EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSGSIRTVAWLHSDQTIL 161 (350)
Q Consensus 87 vWd~~~~~--~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~ 161 (350)
||.-..++ +..++ .|.+.|.+++|+++|.+|||++.|+.|-||.+..... ....+..|...|..+.|.| ..-+|
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHP-t~dlL 165 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHP-TEDLL 165 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcC-Cccee
Confidence 99876443 55555 5999999999999999999999999999999873321 1234567888888888864 56688
Q ss_pred EEEeCCCeEEEEECCC---CceeEeecCC-CCeEEEEEecCCcEE-EEEcCCcEEEEECCCcceeeeeecCCCCceeEec
Q 018784 162 SSCTDSGGVRLWDARS---GKIVQTLETK-SPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNTESASLE 236 (350)
Q Consensus 162 ~s~~~dg~i~iwd~~~---~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 236 (350)
++|+.|++|++|+-.. -++++++..+ +.+.+++|.+.|..| .+++|++++||-..+.-. .........+.+.
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~---~~~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS---GMHSRALYDVPWD 242 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc---hhcccceEeeeec
Confidence 9999999999998662 2578888765 489999999999555 556789999997542100 0001112223333
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCe------eEE-eecCCCcCEEEEEEcCC-CCEEEEecCCCcEEEecC
Q 018784 237 PKLGNIFIAGGEDMWVHVFDFHTGE------QIG-CNKGHHGPVHCVRFSPG-GESYASGSEDGTIRIWQT 299 (350)
Q Consensus 237 ~~~~~~l~sg~~d~~i~v~d~~~~~------~~~-~~~~h~~~v~~l~~sp~-~~~lasgs~Dg~v~vw~~ 299 (350)
...+++++.|+.|++|.....- .+. .-..|...|+++.|.|. ...|++||.||.|++|.+
T Consensus 243 ---~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 243 ---NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred ---ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 4689999999999999865421 111 23468889999999995 678999999999999976
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=242.79 Aligned_cols=270 Identities=21% Similarity=0.369 Sum_probs=227.2
Q ss_pred eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECC
Q 018784 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132 (350)
Q Consensus 54 ~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~ 132 (350)
.++|+||.+.|+++.|++|.+.++|+|.||.+.|||..+....+.+. ....|..++|+|.++++|+|+-|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 37899999999999999999999999999999999998877766665 44579999999999999999999999999997
Q ss_pred CCC-----CCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEec-CCcEEEE-
Q 018784 133 RPD-----APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSR-DGRYITT- 204 (350)
Q Consensus 133 ~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~-~~~~l~~- 204 (350)
..+ ...+.+..|.+-+.++.|.+ ++ .+++++.|.++-+||+++++.+..+..+ ..|.++.+.| +++.+++
T Consensus 128 ~~d~~g~~~v~r~l~gHtgylScC~f~d-D~-~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg 205 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHTGYLSCCRFLD-DN-HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSG 205 (343)
T ss_pred cccccccceeeeeecCccceeEEEEEcC-CC-ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEec
Confidence 441 22345678999999999986 33 4667888999999999999999998865 6799999999 7776655
Q ss_pred EcCCcEEEEECCCcceeeeeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC--CCcCEEEEEEcCC
Q 018784 205 ADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG--HHGPVHCVRFSPG 281 (350)
Q Consensus 205 ~~~~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~--h~~~v~~l~~sp~ 281 (350)
+.|+..++||+|...++++|..+.. ...+.|+| +|.-|++|+.|++.++||++..+++..+.. -..+|++++||..
T Consensus 206 ~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~S 284 (343)
T KOG0286|consen 206 GCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKS 284 (343)
T ss_pred ccccceeeeeccCcceeEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEccc
Confidence 5689999999999999999887654 45667776 588999999999999999999888877763 2357999999999
Q ss_pred CCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccchh
Q 018784 282 GESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKA 341 (350)
Q Consensus 282 ~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~ 341 (350)
|++|.+|..|..+.+||.-..+...... .+.-+|.++..+|||-.
T Consensus 285 GRlLfagy~d~~c~vWDtlk~e~vg~L~---------------GHeNRvScl~~s~DG~a 329 (343)
T KOG0286|consen 285 GRLLFAGYDDFTCNVWDTLKGERVGVLA---------------GHENRVSCLGVSPDGMA 329 (343)
T ss_pred ccEEEeeecCCceeEeeccccceEEEee---------------ccCCeeEEEEECCCCcE
Confidence 9999999999999999987665544443 45556788888888854
No 25
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.1e-36 Score=278.47 Aligned_cols=253 Identities=25% Similarity=0.410 Sum_probs=216.7
Q ss_pred cceeEe----eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-------------------------------
Q 018784 7 AVPLVC----HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG------------------------------- 51 (350)
Q Consensus 7 ~~~~~~----~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~------------------------------- 51 (350)
.+|-+| ..-...++|..|++ |+++||.|-.|..|++|.+...
T Consensus 365 ~lpSic~YT~~nt~~~v~ca~fSd---dssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 365 SLPSICMYTFHNTYQGVTCAEFSD---DSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCcEEEEEEEEcCCcceeEeecC---CcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 345554 33345688888876 9999999999999999997621
Q ss_pred ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784 52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130 (350)
Q Consensus 52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd 130 (350)
...++|-||+++|+.+.|+|+.++|+|+|.|++||+|.+.+..+...+ .|..+|+.+.|+|.|.++||+|.|++.++|.
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence 123467899999999999999999999999999999999998877665 6999999999999999999999999999999
Q ss_pred CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEEcCCc
Q 018784 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSS 209 (350)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~ 209 (350)
... ..+.+....|-+.|.++.|. |+..++++|+.|.+||+||+.+|..++.+.+ ..+|.+++|+|+|
T Consensus 522 ~d~-~~PlRifaghlsDV~cv~FH-PNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~G---------- 589 (707)
T KOG0263|consen 522 TDH-NKPLRIFAGHLSDVDCVSFH-PNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCG---------- 589 (707)
T ss_pred ccc-CCchhhhcccccccceEEEC-CcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCC----------
Confidence 875 45566677888899999875 5677889999999999999999998888875 4789999998865
Q ss_pred EEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEec
Q 018784 210 VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS 289 (350)
Q Consensus 210 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs 289 (350)
++|++|+.|+.|.+||+.+++++..+.+|.+.|.+|.||.+|..||+||
T Consensus 590 -------------------------------r~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg 638 (707)
T KOG0263|consen 590 -------------------------------RYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGG 638 (707)
T ss_pred -------------------------------ceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecC
Confidence 4556777788889999999999999999999999999999999999999
Q ss_pred CCCcEEEecCCCCCcc
Q 018784 290 EDGTIRIWQTNPPNHE 305 (350)
Q Consensus 290 ~Dg~v~vw~~~~~~~~ 305 (350)
.|.+|++||+......
T Consensus 639 ~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 639 ADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCCeEEEEEchhhccc
Confidence 9999999998765544
No 26
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.3e-36 Score=236.87 Aligned_cols=278 Identities=22% Similarity=0.330 Sum_probs=234.5
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~ 91 (350)
+.+|.++|.++.|+. ||+|.+++++|+++++|++..|.+++++.||...|.-++.+.|...+++++.|..|.+||++
T Consensus 13 l~~~qgaV~avryN~---dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNV---DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred ecccccceEEEEEcc---CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc
Confidence 578999999999997 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC-eeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784 92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (350)
Q Consensus 92 ~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~ 169 (350)
+++..+.+ .|...|+.++|+.+...+++|+.|.++++||..+....+ ..+......|.++... +..+++|+-||+
T Consensus 90 TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGt 166 (307)
T KOG0316|consen 90 TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGT 166 (307)
T ss_pred cCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCc
Confidence 99988887 599999999999999999999999999999987654333 3344556677787653 556889999999
Q ss_pred EEEEECCCCceeEeecCCCCeEEEEEecCCcEE-EEEcCCcEEEEECCCcceeeeeecCCCCc---eeEecCCCCcEEEE
Q 018784 170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNTE---SASLEPKLGNIFIA 245 (350)
Q Consensus 170 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~i~vwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~s 245 (350)
++.||+|.|+.... ....||++++|+++++.. +++-++++++.|-.++++++.|..+.+.. .+.+. +....+++
T Consensus 167 vRtydiR~G~l~sD-y~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~-qsdthV~s 244 (307)
T KOG0316|consen 167 VRTYDIRKGTLSSD-YFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLN-QSDTHVFS 244 (307)
T ss_pred EEEEEeecceeehh-hcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeec-ccceeEEe
Confidence 99999999976432 345789999999999875 45568999999999999888877665432 22333 24578999
Q ss_pred ecCCCeEEEEEcccCeeEEeecCCCcC-EEEEEEcCCCCEEEEecCCCcEEEec
Q 018784 246 GGEDMWVHVFDFHTGEQIGCNKGHHGP-VHCVRFSPGGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 246 g~~d~~i~v~d~~~~~~~~~~~~h~~~-v~~l~~sp~~~~lasgs~Dg~v~vw~ 298 (350)
|++||.+++||+.+...+..+..|... |.+++++|....|+++.. +.+.+|.
T Consensus 245 gSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~ 297 (307)
T KOG0316|consen 245 GSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWY 297 (307)
T ss_pred ccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceecee
Confidence 999999999999999999888888877 899999998766665543 3456663
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-35 Score=269.60 Aligned_cols=294 Identities=20% Similarity=0.304 Sum_probs=242.5
Q ss_pred ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCc--EEEEeeCCCeEEEeeCC
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--FSASGSADFTAKLWDAL 91 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~--~l~s~s~Dg~v~vWd~~ 91 (350)
.|+.||.-++|+| .|.+||+|+.|+.+++||...+.+.+.|.||.+.|.++.|+|+.. +|++|..|++|++||+.
T Consensus 103 ~He~Pvi~ma~~~---~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~ 179 (775)
T KOG0319|consen 103 IHEAPVITMAFDP---TGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLN 179 (775)
T ss_pred ccCCCeEEEEEcC---CCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcc
Confidence 3999999999997 778999999999999999999999999999999999999988754 58999999999999976
Q ss_pred CCCe----------------------------------------------------------------------------
Q 018784 92 TGDE---------------------------------------------------------------------------- 95 (350)
Q Consensus 92 ~~~~---------------------------------------------------------------------------- 95 (350)
+...
T Consensus 180 ~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~ 259 (775)
T KOG0319|consen 180 DKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGS 259 (775)
T ss_pred cCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCC
Confidence 3221
Q ss_pred --------------------------------------------------------------------------------
Q 018784 96 -------------------------------------------------------------------------------- 95 (350)
Q Consensus 96 -------------------------------------------------------------------------------- 95 (350)
T Consensus 260 g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~l 339 (775)
T KOG0319|consen 260 GVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHL 339 (775)
T ss_pred ceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceE
Confidence
Q ss_pred --------ee-----------eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCC---CCeeecCCCCcEEEEEE
Q 018784 96 --------KH-----------SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA---PPREVGNSSGSIRTVAW 153 (350)
Q Consensus 96 --------~~-----------~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~---~~~~~~~~~~~v~~~~~ 153 (350)
+. ...|+..|.+++...+|-+|+||+.|.++++|.++.... .......|.+.|.++++
T Consensus 340 aVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~ 419 (775)
T KOG0319|consen 340 AVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAG 419 (775)
T ss_pred EEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeee
Confidence 00 001677788888666778999999999999998854322 22334578889999999
Q ss_pred eCCCCcEEEEEeCCCeEEEEECCCCcee---Eee-------cCCCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceee
Q 018784 154 LHSDQTILSSCTDSGGVRLWDARSGKIV---QTL-------ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVK 222 (350)
Q Consensus 154 ~~~~~~~~~s~~~dg~i~iwd~~~~~~~---~~~-------~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~ 222 (350)
+.....++++++.|.++++|++...+.. ..+ .+...|++++++|+.+++++++ |++.++|++.+....-
T Consensus 420 ~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~ 499 (775)
T KOG0319|consen 420 SKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLG 499 (775)
T ss_pred cccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEE
Confidence 8888899999999999999999763211 111 2456899999999999998875 8899999999887777
Q ss_pred eeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784 223 GYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 223 ~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~ 301 (350)
.+..+... .++.|.+ ..++++++|.|.+|+||.+.+..++.++.||...|..+.|-.+++.|+|++.||.|+||++.+
T Consensus 500 vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt 578 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKT 578 (775)
T ss_pred EeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence 77776654 4455554 578999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCcccCCCCC
Q 018784 302 PNHEENHSGT 311 (350)
Q Consensus 302 ~~~~~~~~~~ 311 (350)
.+.+.....|
T Consensus 579 ~eC~~tlD~H 588 (775)
T KOG0319|consen 579 NECEMTLDAH 588 (775)
T ss_pred hhhhhhhhhc
Confidence 6655444443
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.2e-35 Score=256.96 Aligned_cols=291 Identities=21% Similarity=0.321 Sum_probs=231.9
Q ss_pred ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC--Cceee--------eccCcc----CCeEEEEECCCCcEEEEe
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--GDWIG--------TFEGHK----GAVWSCCLDANALFSASG 79 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~--~~~~~--------~l~gH~----~~V~~v~~~~~~~~l~s~ 79 (350)
+|+.+|.+.+++|.. ..++++|+.|-+.++|++.. ..... .+.++. ..|++++|+.+|.+||+|
T Consensus 176 ~~~~~V~~~~WnP~~--~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG 253 (524)
T KOG0273|consen 176 RHESEVFICAWNPLR--DGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG 253 (524)
T ss_pred cCCCceEEEecCchh--hhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence 499999999999843 23889999999999999752 22211 112332 469999999999999999
Q ss_pred eCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCC
Q 018784 80 SADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158 (350)
Q Consensus 80 s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 158 (350)
+.||.+|+|+.... ...++ .|+++|.++.|+..|++|++++.|+++.+||..+++... ...-|...-..+.|...+
T Consensus 254 ~~~G~~riw~~~G~-l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q-~f~~~s~~~lDVdW~~~~- 330 (524)
T KOG0273|consen 254 SEDGEARIWNKDGN-LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ-QFEFHSAPALDVDWQSND- 330 (524)
T ss_pred ecCcEEEEEecCch-hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE-eeeeccCCccceEEecCc-
Confidence 99999999997544 44444 699999999999999999999999999999997655432 233345555678887443
Q ss_pred cEEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCC-Ccee--
Q 018784 159 TILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESA-- 233 (350)
Q Consensus 159 ~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~-~~~~-- 233 (350)
-+++++-|+.|+++.+...+++.++. ++++|..+.|+|.+.+|+++ +|+++++|.+........+..+.. .+.+
T Consensus 331 -~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~w 409 (524)
T KOG0273|consen 331 -EFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKW 409 (524)
T ss_pred -eEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEee
Confidence 47888899999999998888888776 46899999999999988765 678999999877665554443331 1222
Q ss_pred ------EecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccC
Q 018784 234 ------SLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEEN 307 (350)
Q Consensus 234 ------~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~ 307 (350)
..++..+.++++++.|++|++||+..|.+++++..|+.+|++++|+|+|+++|+|+.||.|.+|+.+..+....
T Consensus 410 sp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 410 SPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred cCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe
Confidence 23344567899999999999999999999999999999999999999999999999999999999887766555
Q ss_pred CCC
Q 018784 308 HSG 310 (350)
Q Consensus 308 ~~~ 310 (350)
..+
T Consensus 490 ~~~ 492 (524)
T KOG0273|consen 490 YQG 492 (524)
T ss_pred ecC
Confidence 433
No 29
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7.5e-35 Score=245.97 Aligned_cols=283 Identities=21% Similarity=0.360 Sum_probs=233.6
Q ss_pred eeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEEC---CCCcEEEEeeCCCeE
Q 018784 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD---ANALFSASGSADFTA 85 (350)
Q Consensus 9 ~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~---~~~~~l~s~s~Dg~v 85 (350)
|+-|.-|.+=|++|.-. ++.++||+.||.++|||. .|+...++.||+++|.++++- +....|+++|.|.++
T Consensus 98 pl~~~~hdDWVSsv~~~-----~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl 171 (423)
T KOG0313|consen 98 PLQCFLHDDWVSSVKGA-----SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTL 171 (423)
T ss_pred ccccccchhhhhhhccc-----CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceE
Confidence 44455677777777432 569999999999999995 689999999999999988873 233469999999999
Q ss_pred EEeeCCCCCeeee-----eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCC------------------------CC
Q 018784 86 KLWDALTGDEKHS-----FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP------------------------DA 136 (350)
Q Consensus 86 ~vWd~~~~~~~~~-----~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~------------------------~~ 136 (350)
++|..+.+..... -.|+..|.++...+++..+++|+.|.++++|+.+.. ..
T Consensus 172 ~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 172 RLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred EEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 9998876653322 269999999999999999999999999999993210 12
Q ss_pred CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE-cCCcEEEEEC
Q 018784 137 PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDA 215 (350)
Q Consensus 137 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~ 215 (350)
+...+.+|..+|.++.|.+ ...+.+++.|.+|+.||+.+++...++....+++++..+|..++|+++ .+..+|+||.
T Consensus 252 P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred ceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCC
Confidence 3345578899999999986 567889999999999999999999999999999999999988887765 5899999999
Q ss_pred CCcc---eeeeeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccCe-eEEeecCCCcCEEEEEEcCCCCEEEEecC
Q 018784 216 NHFG---LVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGE-QIGCNKGHHGPVHCVRFSPGGESYASGSE 290 (350)
Q Consensus 216 ~~~~---~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~-~~~~~~~h~~~v~~l~~sp~~~~lasgs~ 290 (350)
|++. ..+.+..+.+ ...+.++|.+..+|++|+.|+++++||+++.. .+..+.+|...|.++.|. ++.+++||+.
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGa 408 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGA 408 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccC
Confidence 9863 2233433333 34667788888999999999999999999877 889999999999999997 5668999999
Q ss_pred CCcEEEecCC
Q 018784 291 DGTIRIWQTN 300 (350)
Q Consensus 291 Dg~v~vw~~~ 300 (350)
|..|+++...
T Consensus 409 D~~l~i~~~~ 418 (423)
T KOG0313|consen 409 DNKLRIFKGS 418 (423)
T ss_pred cceEEEeccc
Confidence 9999999754
No 30
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.3e-34 Score=249.01 Aligned_cols=275 Identities=22% Similarity=0.416 Sum_probs=233.0
Q ss_pred CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee
Q 018784 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK 96 (350)
Q Consensus 17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~ 96 (350)
..|++++++. +|.+||+|+.||.++||+ .+|..+.+|..|+++|.++.|+.+|.++++++.|+++.+||..++...
T Consensus 236 kdVT~L~Wn~---~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 236 KDVTSLDWNN---DGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred CCcceEEecC---CCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 4789998875 999999999999999999 468888899999999999999999999999999999999999888876
Q ss_pred eeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784 97 HSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (350)
Q Consensus 97 ~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~ 175 (350)
..+. |...-..+.|-.+. .+++.+.|+.|+|+.+.... |.....+|.+.|.++.|.+ .+.+|++|++|+|++||.+
T Consensus 312 q~f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~-P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 312 QQFEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDR-PVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSM 388 (524)
T ss_pred EeeeeccCCccceEEecCc-eEeecCCCceEEEEEecCCC-cceeeecccCceEEEEECC-CCceEEEecCCCeeEeeec
Confidence 6665 44443567776554 47899999999999997544 4455556999999999975 5779999999999999999
Q ss_pred CCCceeEeecCC-CCeEEEEEecCCc----------EEEEEcCCcEEEEECCCcceeeeeecCC-CCceeEecCCCCcEE
Q 018784 176 RSGKIVQTLETK-SPVTSAEVSRDGR----------YITTADGSSVKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIF 243 (350)
Q Consensus 176 ~~~~~~~~~~~~-~~v~~~~~~~~~~----------~l~~~~~~~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l 243 (350)
....+...++.+ ..|..+.|+|.|. ++.++.|++|++||+..+.++..+..+. +...+.+.| +++++
T Consensus 389 ~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~yl 467 (524)
T KOG0273|consen 389 GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYL 467 (524)
T ss_pred CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEE
Confidence 988888888865 4789999998652 4556779999999999999998886554 445566665 69999
Q ss_pred EEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 244 IAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 244 ~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
++|+.|+.|++|+..+++.++.+++-. .|..++|+.+|..|..+-.|+.+++-|++
T Consensus 468 AsGs~dg~V~iws~~~~~l~~s~~~~~-~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 468 ASGSLDGCVHIWSTKTGKLVKSYQGTG-GIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EecCCCCeeEeccccchheeEeecCCC-eEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999998887644 49999999999999999999999998864
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=9.3e-34 Score=281.67 Aligned_cols=280 Identities=15% Similarity=0.207 Sum_probs=219.4
Q ss_pred eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC----c----eeeeccCccCCeEEEEECC-CCcEEEEeeCCC
Q 018784 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----D----WIGTFEGHKGAVWSCCLDA-NALFSASGSADF 83 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~----~----~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg 83 (350)
.+|...|.+++|+| +|.+||+|+.|++|+||+.... . +...+.+ ...|.+++|++ ++.++++++.||
T Consensus 480 ~~~~~~V~~i~fs~---dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 480 LNSSNLVCAIGFDR---DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred cCCCCcEEEEEECC---CCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCC
Confidence 45999999999997 9999999999999999997531 1 2233443 46788999976 578999999999
Q ss_pred eEEEeeCCCCCeeeee-eccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEE
Q 018784 84 TAKLWDALTGDEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL 161 (350)
Q Consensus 84 ~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 161 (350)
+|++||+.+++....+ .|...|.+++|+| ++.+|++|+.|++|++||+.+...... .. +...+.++.|.++++.++
T Consensus 556 ~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~-~~-~~~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 556 VVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT-IK-TKANICCVQFPSESGRSL 633 (793)
T ss_pred eEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEE-Ee-cCCCeEEEEEeCCCCCEE
Confidence 9999999888776665 5899999999997 789999999999999999986544322 22 345788999987788899
Q ss_pred EEEeCCCeEEEEECCCCc-eeEeec-CCCCeEEEEEecCCcEEEEEcCCcEEEEECCCc------ceeeeeecCCCC-ce
Q 018784 162 SSCTDSGGVRLWDARSGK-IVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHF------GLVKGYNMPCNT-ES 232 (350)
Q Consensus 162 ~s~~~dg~i~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~------~~~~~~~~~~~~-~~ 232 (350)
++|+.|++|++||+++++ .+..+. +...|..+.|.+...+++++.|+.|++||++.. .++..+..+... ..
T Consensus 634 atgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~ 713 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNF 713 (793)
T ss_pred EEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeE
Confidence 999999999999998865 344554 446899999985555566678999999999743 344555444333 33
Q ss_pred eEecCCCCcEEEEecCCCeEEEEEcccCeeEEe-------------ecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGC-------------NKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (350)
Q Consensus 233 ~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~-------------~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~ 299 (350)
+.+.+ .+.++++|+.|+.|++|+......+.. ...|...|.+++|+|++..|++|+.||.|+||++
T Consensus 714 v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 714 VGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 44554 478999999999999999765543321 1235567999999999999999999999999985
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.3e-35 Score=267.44 Aligned_cols=202 Identities=28% Similarity=0.491 Sum_probs=183.7
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~ 91 (350)
+-||++||+.+.|+| +.++|+++|.|+++|+|++.+..++-.+.||..+|+.+.|+|.|.+|||+|.|++.++|...
T Consensus 447 L~GH~GPVyg~sFsP---d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSP---DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred eecCCCceeeeeecc---cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 479999999999997 99999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784 92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (350)
Q Consensus 92 ~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i 170 (350)
...+.+.+ .|-+.|.|+.|||+..++++||.|.+||+||+.++... +...+|.+.|.+++|+| +++.+++|++||.|
T Consensus 524 ~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V-RiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I 601 (707)
T KOG0263|consen 524 HNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV-RIFTGHKGPVTALAFSP-CGRYLASGDEDGLI 601 (707)
T ss_pred cCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEE-EEecCCCCceEEEEEcC-CCceEeecccCCcE
Confidence 87777765 69999999999999999999999999999999877654 45566999999999986 78899999999999
Q ss_pred EEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCc
Q 018784 171 RLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHF 218 (350)
Q Consensus 171 ~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~ 218 (350)
++||+.+++.+..+.. .+.+.++.|+.+|..|+++ .|.+|++||+.+.
T Consensus 602 ~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 602 KIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999998887765 4679999999999988776 4789999998653
No 33
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.8e-34 Score=259.70 Aligned_cols=283 Identities=20% Similarity=0.295 Sum_probs=239.2
Q ss_pred eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~ 92 (350)
-|-.+.|.+++|-- |+-.+||.+++...+|+|+..+-.+. .+.||+..|.++....+|.+|+|||.|.++++|.++.
T Consensus 320 vG~ndEI~Dm~~lG--~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~ 396 (775)
T KOG0319|consen 320 VGYNDEILDMKFLG--PEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNN 396 (775)
T ss_pred cCCchhheeeeecC--CccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecC
Confidence 47788999999853 67789999999999999998877776 8999999999999777889999999999999998754
Q ss_pred CCeeee-----eeccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCC--CCCe------eecCCCCcEEEEEEeCCCC
Q 018784 93 GDEKHS-----FEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPD--APPR------EVGNSSGSIRTVAWLHSDQ 158 (350)
Q Consensus 93 ~~~~~~-----~~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~--~~~~------~~~~~~~~v~~~~~~~~~~ 158 (350)
+..... ..|++.|.+++++..+ .+|+++|.|.++++|++.... ..+. ....|...|.+++..| +.
T Consensus 397 ~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-nd 475 (775)
T KOG0319|consen 397 NCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-ND 475 (775)
T ss_pred CcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CC
Confidence 443221 2599999999997644 689999999999999997621 1111 1246788899999875 56
Q ss_pred cEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCceeEec
Q 018784 159 TILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLE 236 (350)
Q Consensus 159 ~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 236 (350)
.++++|+.|++.+||++++.+...++.+| ..+.++.|+|+.++++++ .|.+|++|.+.++.+++++..+........+
T Consensus 476 kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F 555 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASF 555 (775)
T ss_pred ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeee
Confidence 78999999999999999999999999865 579999999998887765 5889999999999999999876544433333
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784 237 PKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (350)
Q Consensus 237 ~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~ 299 (350)
-.++..|++++.||.|++|++++++++.++..|.+.||+++.+|...+++||+.||.|.+|.-
T Consensus 556 ~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 556 IRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred eeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 346899999999999999999999999999999999999999999999999999999999963
No 34
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=225.95 Aligned_cols=256 Identities=21% Similarity=0.377 Sum_probs=210.4
Q ss_pred ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc--eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe
Q 018784 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE 95 (350)
Q Consensus 18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~--~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~ 95 (350)
.|..+. ++||+++||.|+. -.|||||+.++. ++.+|++|++.|.+|.|..+|+.++|||.||++||||+....+
T Consensus 42 qVNrLe---iTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~ 117 (311)
T KOG0315|consen 42 QVNRLE---ITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC 117 (311)
T ss_pred ceeeEE---EcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc
Confidence 466663 5569999998887 678999997754 6889999999999999999999999999999999999998888
Q ss_pred eeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784 96 KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (350)
Q Consensus 96 ~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~ 175 (350)
.+.+.|+.+|+++..+|+...|++|..+|.|++||+................+.++... +++.+++++...|.+++|++
T Consensus 118 qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~-~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 118 QRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVM-PDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred chhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEc-CCCcEEEEecCCccEEEEEc
Confidence 88899999999999999999999999999999999986555445555556678888754 57788888888899999998
Q ss_pred CCCc------eeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCc-ceeeeeecCCCC-ceeEecCCCCcEEEE
Q 018784 176 RSGK------IVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHF-GLVKGYNMPCNT-ESASLEPKLGNIFIA 245 (350)
Q Consensus 176 ~~~~------~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~l~s 245 (350)
-+.. ++..++. ...+..+.++|++++|+++ .|.+++||...++ +..+.+..+..- ..+.|+. +++||++
T Consensus 197 ~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvT 275 (311)
T KOG0315|consen 197 LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVT 275 (311)
T ss_pred cCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEe
Confidence 7653 3344443 4568899999999999765 6899999999887 333333333222 3445554 6899999
Q ss_pred ecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEc
Q 018784 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFS 279 (350)
Q Consensus 246 g~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s 279 (350)
|+.|+.+++|++..++.++...+|..+..|++..
T Consensus 276 assd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 276 ASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred cCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9999999999999999999999999888887764
No 35
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.1e-35 Score=247.98 Aligned_cols=296 Identities=21% Similarity=0.315 Sum_probs=240.7
Q ss_pred cccccceeEe--eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee
Q 018784 3 KRKVAVPLVC--HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS 80 (350)
Q Consensus 3 ~~~~~~~~~~--~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s 80 (350)
.|++++|+|+ .||.+.|++++-+|..+ ..+||||.||.|+|||+...+++.+|++|.+.|..++++. ..++|+|
T Consensus 51 eR~fakPFv~~L~gHrdGV~~lakhp~~l--s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvg 126 (433)
T KOG0268|consen 51 ERVFAKPFVGSLDGHRDGVSCLAKHPNKL--STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVG 126 (433)
T ss_pred HHHhhccchhhccccccccchhhcCcchh--hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEec
Confidence 4899999996 69999999999888544 3789999999999999999999999999999999999976 7788999
Q ss_pred CCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcE
Q 018784 81 ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160 (350)
Q Consensus 81 ~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 160 (350)
.|.+|+.|.... .+.+++..+..+..++.+-.+..++|+|.+ |.|||..... +.....-....+.++.|.|-...+
T Consensus 127 dDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsI 202 (433)
T KOG0268|consen 127 DDKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSI 202 (433)
T ss_pred CCcceeeeeccC-CcceeeeccccccccccccccccccccCce--eeecccccCC-ccceeecCCCceeEEecCCCcchh
Confidence 999999999764 477777777888899888888889998875 8999986433 334444456678999999988999
Q ss_pred EEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE-EcCCcEEEEECCCccee-eeeecCCC-CceeEecC
Q 018784 161 LSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLV-KGYNMPCN-TESASLEP 237 (350)
Q Consensus 161 ~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~-~~~~~~~~-~~~~~~~~ 237 (350)
+++|+.|+.|.++|+|++.++..+.....-+.++|+|++-.+++ ..|..+..||++..... ..+..+.. ...+.++|
T Consensus 203 Las~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp 282 (433)
T KOG0268|consen 203 LASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP 282 (433)
T ss_pred eeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC
Confidence 99999999999999999999998888888899999997655544 45788999999876432 22222222 23344555
Q ss_pred CCCcEEEEecCCCeEEEEEcccCeeEEeecCCC---cCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCC
Q 018784 238 KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHH---GPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHS 309 (350)
Q Consensus 238 ~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~---~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~ 309 (350)
.|+-|++||.|++|+||....+..... .|. ..|.++.||-|.++++|||.|+.|++|.....+.++..+
T Consensus 283 -tG~EfvsgsyDksIRIf~~~~~~SRdi--YhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t 354 (433)
T KOG0268|consen 283 -TGQEFVSGSYDKSIRIFPVNHGHSRDI--YHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVIT 354 (433)
T ss_pred -CcchhccccccceEEEeecCCCcchhh--hhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCC
Confidence 589999999999999999876644322 232 358999999999999999999999999987766655443
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-33 Score=251.77 Aligned_cols=281 Identities=21% Similarity=0.274 Sum_probs=249.6
Q ss_pred eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~ 92 (350)
.-|++.|-+|.|+|..| .++++=..|.+.|||.+++..+++++--.-+|++..|-+....+++|+.|+.|||++..+
T Consensus 10 ~~rSdRVKsVd~HPteP---w~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEP---WILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hccCCceeeeecCCCCc---eEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 45899999999999777 788888999999999999999999998889999999999999999999999999999999
Q ss_pred CCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784 93 GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (350)
Q Consensus 93 ~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~ 171 (350)
.+.+..+ .|...+++++.||...+++|+|.|-+|++||.+..=.......+|.--|.+++|.|.|...++||+-|+||+
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEE
Confidence 9988887 599999999999999999999999999999997643334556778888999999999999999999999999
Q ss_pred EEECCCCceeEeecCC-CCeEEEEEecCC---cEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEec
Q 018784 172 LWDARSGKIVQTLETK-SPVTSAEVSRDG---RYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247 (350)
Q Consensus 172 iwd~~~~~~~~~~~~~-~~v~~~~~~~~~---~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~ 247 (350)
+|.+.+..+..+++.+ ..|+++++-+-| .++++++|..|++||-.+..+++++..+.+..+..+..+.-.++++|+
T Consensus 167 VWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs 246 (794)
T KOG0276|consen 167 VWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGS 246 (794)
T ss_pred EEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEec
Confidence 9999999888888864 689999999876 455666788999999999999999988776655554444468999999
Q ss_pred CCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEE
Q 018784 248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRI 296 (350)
Q Consensus 248 ~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~v 296 (350)
+||++++|+..+-++..++...-+.|||++-.+.+..++.|...|.|.+
T Consensus 247 EDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 247 EDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred CCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999998888888888889999999999888999999988766
No 37
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.9e-34 Score=239.85 Aligned_cols=258 Identities=21% Similarity=0.341 Sum_probs=213.9
Q ss_pred eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEEC
Q 018784 53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131 (350)
Q Consensus 53 ~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~ 131 (350)
....+.||..+|+.+-++|+-.++++++.|++|++||..+++....+ .|.+.|..++|+..|++|++++.|-.+++||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 34567889999999999999999999999999999999999886666 59999999999999999999999999999998
Q ss_pred CCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCC-CeEEEEEecCCcEEEEE-cCCc
Q 018784 132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-PVTSAEVSRDGRYITTA-DGSS 209 (350)
Q Consensus 132 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~~~~ 209 (350)
.+.....+....|.-.|.++.|.|.+ ..++||+.|.+|+.||+.++-++.++..+. -+..+..+.||.+++++ .+.+
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqt 258 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQT 258 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCce
Confidence 76433334455677778999988765 678899999999999999999999998765 47778889999998876 4789
Q ss_pred EEEEECCCcceeeeeecCCCC-ceeEecC--------------CCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEE
Q 018784 210 VKFWDANHFGLVKGYNMPCNT-ESASLEP--------------KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVH 274 (350)
Q Consensus 210 i~vwd~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~ 274 (350)
+++|-..+..+...+..+..+ .++.+.| ..++++.+++.|++|++||+.+|.++.++.+|..+|.
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr 338 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVR 338 (406)
T ss_pred EEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceee
Confidence 999999887443332222221 1111111 1246999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCC
Q 018784 275 CVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGT 311 (350)
Q Consensus 275 ~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~ 311 (350)
.++|+|.|+||+|+..|+++++||+..........++
T Consensus 339 ~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah 375 (406)
T KOG0295|consen 339 GVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH 375 (406)
T ss_pred eeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence 9999999999999999999999999877766554443
No 38
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.2e-33 Score=242.37 Aligned_cols=288 Identities=25% Similarity=0.345 Sum_probs=237.0
Q ss_pred ccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeE
Q 018784 6 VAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85 (350)
Q Consensus 6 ~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v 85 (350)
+..|.+...| .+|..++|+|..|.. +.+|+| -.+.||+..+-...+++......|.+++|..||+++|.|...|.|
T Consensus 17 ~~~~~~~ke~-~~vssl~fsp~~P~d-~aVt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V 92 (487)
T KOG0310|consen 17 ETFPPVHKEH-NSVSSLCFSPKHPYD-FAVTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHV 92 (487)
T ss_pred hccccccccc-CcceeEecCCCCCCc-eEEecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcE
Confidence 3445544443 589999999998874 444444 467899998888888899999999999999999999999999999
Q ss_pred EEeeCCCCCeeeee-eccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784 86 KLWDALTGDEKHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163 (350)
Q Consensus 86 ~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s 163 (350)
+|+|..+...+..+ .|..+|..+.|+|++ +.|++|+.|+.+++||+.+... ...+..|...|++.+|+|....++++
T Consensus 93 ~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvt 171 (487)
T KOG0310|consen 93 KVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVT 171 (487)
T ss_pred EEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEe
Confidence 99996554333333 699999999999955 5678899999999999987663 44667899999999999999999999
Q ss_pred EeCCCeEEEEECCCC-ceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeec-CCCCceeEecCCCCc
Q 018784 164 CTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNM-PCNTESASLEPKLGN 241 (350)
Q Consensus 164 ~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 241 (350)
|+.||+|++||+|+. ..+.++.+..+|.++.+-|.|.+++++.+..|++||+-++........ +....++.....++.
T Consensus 172 GsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~ 251 (487)
T KOG0310|consen 172 GSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDST 251 (487)
T ss_pred cCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCc
Confidence 999999999999987 788899999999999999999999999999999999986554332222 333333333333578
Q ss_pred EEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784 242 IFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (350)
Q Consensus 242 ~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~ 299 (350)
.|++|+.|+.+++||+.+.+.++.+. ..++|.+++.+|+++.++.|-.||.+.+=+.
T Consensus 252 rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 252 RLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred eEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehh
Confidence 99999999999999988888776664 6789999999999999999999999888743
No 39
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=4.3e-33 Score=229.89 Aligned_cols=284 Identities=25% Similarity=0.392 Sum_probs=232.6
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC------------------CceeeeccCccCCeEEEEECCCC
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET------------------GDWIGTFEGHKGAVWSCCLDANA 73 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~------------------~~~~~~l~gH~~~V~~v~~~~~~ 73 (350)
+..|+.++.+.+|+| ||.++||||.|.+|+|.|++. ...+++|-.|.+.|+.+.|+|..
T Consensus 108 lt~HK~~cR~aafs~---DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSP---DGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred EeecccceeeeeeCC---CCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 367999999999997 999999999999999999761 13577888899999999999999
Q ss_pred cEEEEeeCCCeEEEeeCCCCCee---eeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe--eecCCCCcE
Q 018784 74 LFSASGSADFTAKLWDALTGDEK---HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR--EVGNSSGSI 148 (350)
Q Consensus 74 ~~l~s~s~Dg~v~vWd~~~~~~~---~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~--~~~~~~~~v 148 (350)
..|+||+.|++|+++|......+ ..+.....|+++.|+|.|.+|+.|..-.++++||+++.++-.. ....|.+.|
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 99999999999999998644322 2345667899999999999999999999999999987653221 234678899
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC---CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeee
Q 018784 149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGY 224 (350)
Q Consensus 149 ~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~ 224 (350)
+++.+++ .+.+.++++.||.|++||=-+++++.++.. ...|.+..|..+++++.++ -|..+++|.+.++++++.|
T Consensus 265 ~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y 343 (430)
T KOG0640|consen 265 TQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY 343 (430)
T ss_pred eEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence 9999875 567889999999999999989999888763 4679999999999998655 5889999999999999998
Q ss_pred ecCCCC------ceeEecCCCCcEEEEecC-CCeEEEEEcccCeeEEee-cCCCcCEEEEEEcCCCCEEEEecCCCcEEE
Q 018784 225 NMPCNT------ESASLEPKLGNIFIAGGE-DMWVHVFDFHTGEQIGCN-KGHHGPVHCVRFSPGGESYASGSEDGTIRI 296 (350)
Q Consensus 225 ~~~~~~------~~~~~~~~~~~~l~sg~~-d~~i~v~d~~~~~~~~~~-~~h~~~v~~l~~sp~~~~lasgs~Dg~v~v 296 (350)
...... ....|+. ...+++.-.+ -+.+.-||.++++.+..+ .+|.+++..+.-||.++.+++||.|-++|+
T Consensus 344 tGAg~tgrq~~rtqAvFNh-tEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 344 TGAGTTGRQKHRTQAVFNH-TEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred ecCCcccchhhhhhhhhcC-ccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeee
Confidence 875321 1223332 2344444333 456889999998876655 489999999999999999999999999999
Q ss_pred ecCC
Q 018784 297 WQTN 300 (350)
Q Consensus 297 w~~~ 300 (350)
|-.+
T Consensus 423 Wyrr 426 (430)
T KOG0640|consen 423 WYRR 426 (430)
T ss_pred eeec
Confidence 9654
No 40
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=233.74 Aligned_cols=278 Identities=25% Similarity=0.351 Sum_probs=236.5
Q ss_pred ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeec--------cCccCCeEEEEECCCCcEEEEeeCCCeE
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF--------EGHKGAVWSCCLDANALFSASGSADFTA 85 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l--------~gH~~~V~~v~~~~~~~~l~s~s~Dg~v 85 (350)
|.+..+-|..|+| ||.||++||-||-|.+|+.-+|+..+.| .-|..+|.|++|+-|..++|||+.||.|
T Consensus 211 g~KSh~EcA~FSP---DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkI 287 (508)
T KOG0275|consen 211 GQKSHVECARFSP---DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKI 287 (508)
T ss_pred ccccchhheeeCC---CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcE
Confidence 6666777888886 9999999999999999999998876544 4488999999999999999999999999
Q ss_pred EEeeCCCCCeeeee--eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784 86 KLWDALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163 (350)
Q Consensus 86 ~vWd~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s 163 (350)
+||.+.+|.+++.+ .|+..|+|+.|+.|+..+++++.|.++|+--+.++... +...+|..-|....|.+ ++..+++
T Consensus 288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L-KEfrGHsSyvn~a~ft~-dG~~iis 365 (508)
T KOG0275|consen 288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL-KEFRGHSSYVNEATFTD-DGHHIIS 365 (508)
T ss_pred EEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhH-HHhcCccccccceEEcC-CCCeEEE
Confidence 99999999998887 49999999999999999999999999999999876654 45567888888888874 6667889
Q ss_pred EeCCCeEEEEECCCCceeEeecC---CCCeEEEEEecCC--cEEEEEcCCcEEEEECCCcceeeeeecCC----CCceeE
Q 018784 164 CTDSGGVRLWDARSGKIVQTLET---KSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNMPC----NTESAS 234 (350)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~--~~l~~~~~~~i~vwd~~~~~~~~~~~~~~----~~~~~~ 234 (350)
++.||+|++|+.++.+++.+++. ..+++++...|.+ .++++....++.+.++. ++.++.+.... ....+.
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence 99999999999999999988875 4578888877754 46666667788888875 45566655432 234555
Q ss_pred ecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 235 ~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~ 298 (350)
+.| .|..+.+.++|+.++.|...+|...+++.-|+.-|-.++-+|..+.+|+-++||.+++|.
T Consensus 445 lSp-kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSP-KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecC-CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 665 488999999999999999999999999999999999999999999999999999999994
No 41
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-31 Score=243.96 Aligned_cols=285 Identities=18% Similarity=0.329 Sum_probs=232.6
Q ss_pred CCceeEEEecccCCCccEEEEEeC-CCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC
Q 018784 16 SRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD 94 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~~lasgs~-d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~ 94 (350)
..+|..+.|+. .|.-||-|+. -|.+-+|+-.+...+....||...+.+++++|||+++|||+.||.|||||...+-
T Consensus 307 ~~~I~t~~~N~---tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf 383 (893)
T KOG0291|consen 307 DQKILTVSFNS---TGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF 383 (893)
T ss_pred cceeeEEEecc---cCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce
Confidence 45777888875 6888888876 3789999988888888889999999999999999999999999999999999999
Q ss_pred eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC-eEEE
Q 018784 95 EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG-GVRL 172 (350)
Q Consensus 95 ~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg-~i~i 172 (350)
|..++ .|+..|..+.|+..++.+++.+-||+||.||+.....-.....+..-...+++..+ .+.++.+|+.|. .|.+
T Consensus 384 C~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~Ifv 462 (893)
T KOG0291|consen 384 CFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFV 462 (893)
T ss_pred EEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEE
Confidence 99888 69999999999999999999999999999999865544344444444555666544 455666666665 5999
Q ss_pred EECCCCceeEeecC-CCCeEEEEEecCCcEEEEEc-CCcEEEEECCCc-ceeeeeecCCCCceeEecCCCCcEEEEecCC
Q 018784 173 WDARSGKIVQTLET-KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGGED 249 (350)
Q Consensus 173 wd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 249 (350)
|++++|+.+-.+.+ .+||..++|+|.+..|++++ |.+||+||+-.. +.+.++..........+.| +|+.+++++.|
T Consensus 463 WS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrP-dG~elaVaTld 541 (893)
T KOG0291|consen 463 WSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRP-DGKELAVATLD 541 (893)
T ss_pred EEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcC-CCCeEEEEEec
Confidence 99999999998885 57999999999999988765 999999998653 3455556555666777777 58999999999
Q ss_pred CeEEEEEcccCeeEEeecC--------------------CCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784 250 MWVHVFDFHTGEQIGCNKG--------------------HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305 (350)
Q Consensus 250 ~~i~v~d~~~~~~~~~~~~--------------------h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~ 305 (350)
|.|.+||...+.++..+.| -....+.+++|+||.++++|+....|++|+++.....
T Consensus 542 gqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vll 617 (893)
T KOG0291|consen 542 GQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLL 617 (893)
T ss_pred ceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhhee
Confidence 9999999877665432211 1246889999999999999999999999998755544
No 42
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.1e-33 Score=239.48 Aligned_cols=278 Identities=18% Similarity=0.274 Sum_probs=234.9
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc--eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~--~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd 89 (350)
+..|.+.|..+-|-+ +...|++|+.|..|++|+....+ ...+|.|--+.|..+.+.+++..+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~---~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLR---NSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEcc---CcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence 467999999999886 66789999999999999976554 7788999889999999999999999999999999999
Q ss_pred CCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784 90 ALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168 (350)
Q Consensus 90 ~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg 168 (350)
+...+..+++ .|+..|+++.|......+++|+.|++|+.||+.+..+....... ..+..+... ...++||..|+
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~--S~cnDI~~~---~~~~~SgH~Dk 322 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPG--SQCNDIVCS---ISDVISGHFDK 322 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccccc--ccccceEec---ceeeeeccccc
Confidence 9988888877 59999999999887777999999999999999875554333221 223344432 45688999999
Q ss_pred eEEEEECCCCceeEeecCCCCeEEEEEecCCcEE-EEEcCCcEEEEECCCcceeeeeecCCCC-----ceeEecCCCCcE
Q 018784 169 GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNT-----ESASLEPKLGNI 242 (350)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~~~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 242 (350)
+|++||.+++.+.......+.++++..++++..+ +++.|.++.+.|+++......+.-++.. ....|+ +++.|
T Consensus 323 kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfS-pd~~Y 401 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFS-PDGSY 401 (459)
T ss_pred ceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEEC-CCCce
Confidence 9999999999999999999999999999998655 5567899999999999888777665432 233444 46899
Q ss_pred EEEecCCCeEEEEEcccCeeEEeecCCCc--CEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784 243 FIAGGEDMWVHVFDFHTGEQIGCNKGHHG--PVHCVRFSPGGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 243 l~sg~~d~~i~v~d~~~~~~~~~~~~h~~--~v~~l~~sp~~~~lasgs~Dg~v~vw~ 298 (350)
+++||.||.|+||++.++++...+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 402 vaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 402 VAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred eeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999999999999999999888875444 599999999999999999999999994
No 43
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=5.5e-32 Score=251.69 Aligned_cols=277 Identities=25% Similarity=0.399 Sum_probs=233.1
Q ss_pred cCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeee-ccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC
Q 018784 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (350)
Q Consensus 15 H~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~-l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~ 93 (350)
|...+.+..|. ..++++++.|.++++|+..++..+.. +.||++.|+++++..-+.++++|+.|.++|+||..++
T Consensus 207 ~~~~~~~~q~~-----~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg 281 (537)
T KOG0274|consen 207 DDHVVLCLQLH-----DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG 281 (537)
T ss_pred Ccchhhhheee-----cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence 44456666665 34789999999999999999998888 9999999999999877889999999999999999999
Q ss_pred Ceeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEE
Q 018784 94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172 (350)
Q Consensus 94 ~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i 172 (350)
++.+++. |.+.|+++...+ ..+++|+.|.+|++|++..+...... ..|.+.|.++... +.++++|+.|++|++
T Consensus 282 ~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~-~~h~~~V~~v~~~---~~~lvsgs~d~~v~V 355 (537)
T KOG0274|consen 282 ECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLL-RGHTGPVNCVQLD---EPLLVSGSYDGTVKV 355 (537)
T ss_pred cEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEe-ccccccEEEEEec---CCEEEEEecCceEEE
Confidence 9999986 999999987664 45788999999999999876654333 4499999999864 668899999999999
Q ss_pred EECCCCceeEeecCC-CCeEEEEEecCCcEEEEEcCCcEEEEECCCc-ceeeeeecCCCCceeEecCCCCcEEEEecCCC
Q 018784 173 WDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGGEDM 250 (350)
Q Consensus 173 wd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~ 250 (350)
||+++++++..+..+ ..|.++.+.+...++.++-|++|++||+++. +++.++..+....... ...++.|++++.|+
T Consensus 356 W~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~~~~~Lvs~~aD~ 433 (537)
T KOG0274|consen 356 WDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LLRDNFLVSSSADG 433 (537)
T ss_pred EEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccc--ccccceeEeccccc
Confidence 999999999999865 5788887777656666777999999999999 8888877665443211 12368999999999
Q ss_pred eEEEEEcccCeeEEeecC-CCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCccc
Q 018784 251 WVHVFDFHTGEQIGCNKG-HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEE 306 (350)
Q Consensus 251 ~i~v~d~~~~~~~~~~~~-h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~ 306 (350)
+|++||..+++++.++.+ |...|+++++. ...+++++.|+.+++||++......
T Consensus 434 ~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 434 TIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred cEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence 999999999999999998 77899999987 5678999999999999998666554
No 44
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.1e-32 Score=228.66 Aligned_cols=247 Identities=25% Similarity=0.405 Sum_probs=209.8
Q ss_pred ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784 52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFD 130 (350)
Q Consensus 52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd 130 (350)
+..+.+.||-+-|+|+++.|-.++|+||+.|++|+|||+.+++.+.++. |...|+.+++++-..++.+++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 4456789999999999999999999999999999999999999888886 999999999999999999999999999999
Q ss_pred CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEec-CCcEEEEEcCC
Q 018784 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSR-DGRYITTADGS 208 (350)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~-~~~~l~~~~~~ 208 (350)
++..+..... -+|-..|++++.. +.-.++++|+.|.++++||+|+...+..+.. ..+|.++.+.| |.+.++++.|+
T Consensus 222 Le~nkvIR~Y-hGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 222 LEYNKVIRHY-HGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred chhhhhHHHh-ccccceeEEEecc-ccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence 9865544333 4566778888865 4456788999999999999999999999984 57899998886 66777778899
Q ss_pred cEEEEECCCcceeeeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEE
Q 018784 209 SVKFWDANHFGLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYAS 287 (350)
Q Consensus 209 ~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~las 287 (350)
+|++||++.++...++..+... ....++|. ...|++++.|. |+-|++..|..+..+.+|..-|.+|+...|+ ++++
T Consensus 300 tvrlWDl~agkt~~tlt~hkksvral~lhP~-e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~ 376 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKKSVRALCLHPK-ENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS 376 (460)
T ss_pred eEEEeeeccCceeEeeecccceeeEEecCCc-hhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEE
Confidence 9999999998877766655443 34455553 57788887765 8999999999988899999999999998776 7889
Q ss_pred ecCCCcEEEecCCCCC
Q 018784 288 GSEDGTIRIWQTNPPN 303 (350)
Q Consensus 288 gs~Dg~v~vw~~~~~~ 303 (350)
|+..|.+.+||...+-
T Consensus 377 G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKSGH 392 (460)
T ss_pred cCCceEEEEEecCcCc
Confidence 9999999999986543
No 45
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=5.3e-31 Score=261.97 Aligned_cols=295 Identities=14% Similarity=0.213 Sum_probs=222.3
Q ss_pred CCCeeEeeCCCCceeee-----ccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC----C----eeeeeeccccEe
Q 018784 40 DSSPMLRNGETGDWIGT-----FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG----D----EKHSFEHKHIVR 106 (350)
Q Consensus 40 d~~v~iw~~~~~~~~~~-----l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~----~----~~~~~~h~~~V~ 106 (350)
+|-+++|+....+.... +.+|.+.|.+++|++++.++||||.|++|+|||.... . ....+.+...|.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 56678888776554433 4459999999999999999999999999999997532 1 122344556789
Q ss_pred EEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec
Q 018784 107 ACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE 185 (350)
Q Consensus 107 ~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~ 185 (350)
+++|+| ++.+|++++.|++|++||+.+... ......|.+.|.+++|.+.++.++++|+.|++|++||+++++.+..+.
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~-~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVARSQL-VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK 615 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCCCeE-EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 999987 478999999999999999986543 344567888999999998788899999999999999999999888888
Q ss_pred CCCCeEEEEEe-cCCcEEEEE-cCCcEEEEECCCcc-eeeeeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccC-
Q 018784 186 TKSPVTSAEVS-RDGRYITTA-DGSSVKFWDANHFG-LVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTG- 260 (350)
Q Consensus 186 ~~~~v~~~~~~-~~~~~l~~~-~~~~i~vwd~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~- 260 (350)
.+..+.++.|. +++.+++++ .++.|++||+++.. .+..+..+.. ...+.+. ++.++++++.|+.|++||+..+
T Consensus 616 ~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 616 TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCc
Confidence 77888999995 467777655 58899999998765 2333332322 2233443 4789999999999999999743
Q ss_pred -----eeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCC-CCCccccccccccccceeeeeeEE
Q 018784 261 -----EQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSG-TGNAQTGKLKASTDEVTRKIEGFH 334 (350)
Q Consensus 261 -----~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~ 334 (350)
..+..+.+|...+.+++|+|++.+|++|+.|+.|++|+...+.....+.. ......+ .........|..+.
T Consensus 694 ~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~---~~~~~~~~~V~~v~ 770 (793)
T PLN00181 694 SGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSG---LEVDDASQFISSVC 770 (793)
T ss_pred cccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccc---cccCCCCcEEEEEE
Confidence 56778899999999999999999999999999999999765433211110 0000111 11233445678888
Q ss_pred Ecccch
Q 018784 335 INKEGK 340 (350)
Q Consensus 335 ~~~~g~ 340 (350)
++++|.
T Consensus 771 ws~~~~ 776 (793)
T PLN00181 771 WRGQSS 776 (793)
T ss_pred EcCCCC
Confidence 888775
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4e-31 Score=245.95 Aligned_cols=256 Identities=25% Similarity=0.423 Sum_probs=214.5
Q ss_pred eeeccCc-cCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC--eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEE
Q 018784 54 IGTFEGH-KGAVWSCCLDANALFSASGSADFTAKLWDALTGD--EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIF 129 (350)
Q Consensus 54 ~~~l~gH-~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~--~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vw 129 (350)
...+.+| ...|.++.|+++|.++++++.|+.+++|+..+.. ....+ .|...|..++|+|+++++++++.|+++++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 3455555 7889999999999999999999999999996666 44443 689999999999999999999999999999
Q ss_pred ECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEEc-C
Q 018784 130 DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTAD-G 207 (350)
Q Consensus 130 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~ 207 (350)
|+.......+.+..|...|.+++|.+.+ .++++|+.|++|++||+++++++..+..+ .+++.++|++++.++++++ |
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9955544556677899999999999877 89999999999999999999999999865 5899999999999987765 8
Q ss_pred CcEEEEECCCcc--eeeeeecCCCC---ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcC---EEEEEEc
Q 018784 208 SSVKFWDANHFG--LVKGYNMPCNT---ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGP---VHCVRFS 279 (350)
Q Consensus 208 ~~i~vwd~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~---v~~l~~s 279 (350)
+.|++||+.++. +.+........ ..+.+. +++.++++++.|+.+++||+..+..+..+.+|... +.+..++
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fs-p~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFS-PNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEEC-CCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccccc
Confidence 999999999988 44444443333 334444 46899999999999999999999999999998874 4455667
Q ss_pred CCCCEEEEecCCCcEEEecCCCCCcccCCCCC
Q 018784 280 PGGESYASGSEDGTIRIWQTNPPNHEENHSGT 311 (350)
Q Consensus 280 p~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~ 311 (350)
+.+.++++|+.|+.|++|+...........++
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 89999999999999999999876655555554
No 47
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-30 Score=214.22 Aligned_cols=284 Identities=24% Similarity=0.339 Sum_probs=227.6
Q ss_pred cccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeC--C
Q 018784 5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA--D 82 (350)
Q Consensus 5 ~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~--D 82 (350)
++....+++.-...|.++.|++ +|.+|++++.|.+++|||..++++++++..+.-.|..++|......+.-++. |
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~---~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSD---DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred ccccccccccCCCceeEEEecC---CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCC
Confidence 3444555666678999999997 9999999999999999999999999999998888988888655554444455 9
Q ss_pred CeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEE
Q 018784 83 FTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL 161 (350)
Q Consensus 83 g~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 161 (350)
.+||..++.+++.++++ .|+..|.++..+|-+..+++++.|++||+||++........... .. ..++| .+++.++
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~-~~--pi~Af-Dp~GLif 155 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS-GR--PIAAF-DPEGLIF 155 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC-CC--cceeE-CCCCcEE
Confidence 99999999999998887 59999999999999999999999999999999855543322211 11 12344 5677888
Q ss_pred EEEeCCCeEEEEECCCC--ceeEeec----CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCc---
Q 018784 162 SSCTDSGGVRLWDARSG--KIVQTLE----TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTE--- 231 (350)
Q Consensus 162 ~s~~~dg~i~iwd~~~~--~~~~~~~----~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~--- 231 (350)
|.+.....|+++|+|+. .+..++. ...+.+.+.|+|||+++..+ ..+.+.+.|.-++..+.++....+..
T Consensus 156 A~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 156 ALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP 235 (311)
T ss_pred EEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence 88777679999999974 3444443 24678999999999987655 56789999999988887777654433
Q ss_pred -eeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC-CCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784 232 -SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG-HHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 232 -~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~-h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~ 298 (350)
.+.+.| +++.+++|+.||+|++|++.+|..+..+.+ +.+++.++.|+|.-.+++|++. .+.+|=
T Consensus 236 ~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw~ 301 (311)
T KOG1446|consen 236 LSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFWL 301 (311)
T ss_pred eeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEEe
Confidence 555655 589999999999999999999999999988 7999999999998777776654 688884
No 48
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.4e-30 Score=226.04 Aligned_cols=311 Identities=19% Similarity=0.245 Sum_probs=236.4
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~ 91 (350)
+.||...|.++.|-|.-|- .++|||.|+++.++.....++..++..|+.-|+++.++|||.+++|+|.||.|.++|-.
T Consensus 143 i~GhSr~ins~~~KpsRPf--Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGk 220 (603)
T KOG0318|consen 143 ITGHSRRINSVDFKPSRPF--RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGK 220 (603)
T ss_pred eeccceeEeeeeccCCCce--EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCC
Confidence 4699999999999987664 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeeee----ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCC--CcEEEEEEeCCCCcEEEEEe
Q 018784 92 TGDEKHSFE----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS--GSIRTVAWLHSDQTILSSCT 165 (350)
Q Consensus 92 ~~~~~~~~~----h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~s~~ 165 (350)
+++.+..+. |++.|.++.|+||++.++|++.|.++||||+.............. ..-..+.|- +..+++-+
T Consensus 221 tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq---kd~lItVS 297 (603)
T KOG0318|consen 221 TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ---KDHLITVS 297 (603)
T ss_pred CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe---CCeEEEEE
Confidence 999887774 999999999999999999999999999999987654443332222 333445554 22455566
Q ss_pred CCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeee-ecCCCCceeEecCCCCcE
Q 018784 166 DSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGY-NMPCNTESASLEPKLGNI 242 (350)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 242 (350)
-+|+|.+++.....++..+..+ ..|+++..++++++|.++ .||.|.-||..++..-+.. ..+.+........ ....
T Consensus 298 l~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-~~~~ 376 (603)
T KOG0318|consen 298 LSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-ESGE 376 (603)
T ss_pred cCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec-CCCc
Confidence 7799999999998888888765 589999999999988766 5999999999876543322 1122222222221 2245
Q ss_pred EEEecCCCeEEEEEcccCe-----------e--------------------EEeecCCC--------cCEEEEEEcCCCC
Q 018784 243 FIAGGEDMWVHVFDFHTGE-----------Q--------------------IGCNKGHH--------GPVHCVRFSPGGE 283 (350)
Q Consensus 243 l~sg~~d~~i~v~d~~~~~-----------~--------------------~~~~~~h~--------~~v~~l~~sp~~~ 283 (350)
+++.+.|.++++.++.... + +..++.+. -.+.+++++|++.
T Consensus 377 ~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~ 456 (603)
T KOG0318|consen 377 LFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGS 456 (603)
T ss_pred EEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCC
Confidence 6677777888887653211 0 00112121 1356799999999
Q ss_pred EEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccchh
Q 018784 284 SYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKA 341 (350)
Q Consensus 284 ~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~ 341 (350)
.+|.|++||.|+||.+....+.+ +....++.++|..+..||||.-
T Consensus 457 ~vaVGG~Dgkvhvysl~g~~l~e-------------e~~~~~h~a~iT~vaySpd~~y 501 (603)
T KOG0318|consen 457 EVAVGGQDGKVHVYSLSGDELKE-------------EAKLLEHRAAITDVAYSPDGAY 501 (603)
T ss_pred EEEEecccceEEEEEecCCcccc-------------eeeeecccCCceEEEECCCCcE
Confidence 99999999999999886544321 2224567888899999999863
No 49
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.6e-31 Score=240.06 Aligned_cols=316 Identities=20% Similarity=0.305 Sum_probs=247.8
Q ss_pred ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~ 93 (350)
.-..+|++++-+| |.-.||.|-.||.|+||+..+...+-++.||+.+|+++.|+..|..|+|||.|+.|.+||+...
T Consensus 63 ~~k~evt~l~~~~---d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E 139 (888)
T KOG0306|consen 63 KKKAEVTCLRSSD---DILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGE 139 (888)
T ss_pred cccceEEEeeccC---CcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccc
Confidence 3345788887664 8888999999999999999999999999999999999999999999999999999999999776
Q ss_pred Ceeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEE
Q 018784 94 DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172 (350)
Q Consensus 94 ~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i 172 (350)
..+..+ .|+..|+..-|.....++++.+.|+.|++||+++..+ ......|.+.++.+++.+ ..+++++.|+.+++
T Consensus 140 ~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhC-f~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v 215 (888)
T KOG0306|consen 140 EGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHC-FETHVDHRGEIWALVLDE---KLLVTAGTDSELKV 215 (888)
T ss_pred eeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccccee-eeEEecccceEEEEEEec---ceEEEEecCCceEE
Confidence 666666 5899999999998889999999999999999987544 344567888999998764 56777788899999
Q ss_pred EECCC------------------------CceeEe----------------------e----------------------
Q 018784 173 WDARS------------------------GKIVQT----------------------L---------------------- 184 (350)
Q Consensus 173 wd~~~------------------------~~~~~~----------------------~---------------------- 184 (350)
|++.. ++.+.. +
T Consensus 216 ~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~ 295 (888)
T KOG0306|consen 216 WELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAE 295 (888)
T ss_pred EEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcc
Confidence 98810 000000 0
Q ss_pred ---------------------------------------------------------------------------cCCCC
Q 018784 185 ---------------------------------------------------------------------------ETKSP 189 (350)
Q Consensus 185 ---------------------------------------------------------------------------~~~~~ 189 (350)
.+.+.
T Consensus 296 t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~d 375 (888)
T KOG0306|consen 296 TEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSD 375 (888)
T ss_pred ccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhh
Confidence 00012
Q ss_pred eEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCC
Q 018784 190 VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGH 269 (350)
Q Consensus 190 v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h 269 (350)
|.+++++.+...++++.++.+++|+..+.++++++... ...+..+-+.+++++.|...|.+.+||+.....+.+...|
T Consensus 376 VRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AH 453 (888)
T KOG0306|consen 376 VRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAH 453 (888)
T ss_pred eeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcc
Confidence 45556666666777777889999999999999987654 3333333345799999999999999999999999999999
Q ss_pred CcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccchh
Q 018784 270 HGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKA 341 (350)
Q Consensus 270 ~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~ 341 (350)
.+.||+++.+||+..+++||.|.+|++|+...... +.. .-.....-.+...-+.+..|.+..+||||+-
T Consensus 454 dgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~-~~g--t~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS-VPG--TQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred ccceeeeeecCCCCceEEecCCcEEEEEeEEEEec-cCc--ccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 99999999999999999999999999999743322 111 1111122223334567788999999999974
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.7e-31 Score=219.57 Aligned_cols=258 Identities=19% Similarity=0.307 Sum_probs=211.1
Q ss_pred eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC-Ceeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784 53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-DEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130 (350)
Q Consensus 53 ~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~-~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd 130 (350)
++..+.||++.|+.+.|+|+|.+|||||.|..|.+|+.... +....+ .|.+.|..+.|.+++..++++|.|.+++.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 44567899999999999999999999999999999996432 223333 5999999999999999999999999999999
Q ss_pred CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE-EcCCc
Q 018784 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSS 209 (350)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~ 209 (350)
+++++...+. ..|...+.++.-..-+..++.++++|+++++||+|+..+++++....+++++.|..++..+.+ +=|+.
T Consensus 119 ~~tG~~~rk~-k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AETGKRIRKH-KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred cccceeeehh-ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 9987665433 556677777764444667899999999999999999999999988999999999987766554 45889
Q ss_pred EEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEccc----CeeEEeecCCCc----CEEEEEEcCC
Q 018784 210 VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT----GEQIGCNKGHHG----PVHCVRFSPG 281 (350)
Q Consensus 210 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~----~~~~~~~~~h~~----~v~~l~~sp~ 281 (350)
|++||++.......+..+..+..-.+..+++..+++-+-|.++++||++. .+++..+.+|.- ....++|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 99999999888877777776666556666799999999999999999874 344666666532 3467889999
Q ss_pred CCEEEEecCCCcEEEecCCCCCcccCCCCC
Q 018784 282 GESYASGSEDGTIRIWQTNPPNHEENHSGT 311 (350)
Q Consensus 282 ~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~ 311 (350)
++++.+|+.|..+++||...........|+
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh 307 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGH 307 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCc
Confidence 999999999999999998765555444443
No 51
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.5e-32 Score=249.12 Aligned_cols=238 Identities=21% Similarity=0.325 Sum_probs=196.7
Q ss_pred ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-------------------------------------------
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET------------------------------------------- 50 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~------------------------------------------- 50 (350)
.|++.|+++.|++ ||+|||+|+.|+.|+||.+..
T Consensus 265 ah~gaIw~mKFS~---DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 265 AHKGAIWAMKFSH---DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred ccCCcEEEEEeCC---CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 8999999999997 999999999999999998533
Q ss_pred -----------------CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcC-
Q 018784 51 -----------------GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE- 112 (350)
Q Consensus 51 -----------------~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~- 112 (350)
.+++..|.||.+.|.-+.|+.+ .+|.|+|.|.|||+|++....++..+.|++.|+|++|+|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPV 420 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEeccc
Confidence 0234567899999999999854 566799999999999999999999999999999999999
Q ss_pred CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC------
Q 018784 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET------ 186 (350)
Q Consensus 113 ~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~------ 186 (350)
|.+++++|+-|+.+|||++...+. ...-....-|++++|.|+ +..++.|+.+|.+++|+++..+.....+-
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~V--v~W~Dl~~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKV--VDWNDLRDLITAVCYSPD-GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred CCCcEeecccccceEEeecCcCee--EeehhhhhhheeEEeccC-CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 789999999999999999974332 222334467999999876 66777889999999999988776555431
Q ss_pred ---CCCeEEEEEecCC--cEEEEEcCCcEEEEECCCcceeeeeecCCC---CceeEecCCCCcEEEEecCCCeEEEEEcc
Q 018784 187 ---KSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNMPCN---TESASLEPKLGNIFIAGGEDMWVHVFDFH 258 (350)
Q Consensus 187 ---~~~v~~~~~~~~~--~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~sg~~d~~i~v~d~~ 258 (350)
+..|+.+.|.|.. ++|+++.|..|||||+++..++..+....+ .....|.. +|++++++++|..|++|++.
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecCceEEEEeCC
Confidence 2369999998743 589999999999999988877766654433 34566666 79999999999999999974
Q ss_pred c
Q 018784 259 T 259 (350)
Q Consensus 259 ~ 259 (350)
.
T Consensus 577 ~ 577 (712)
T KOG0283|consen 577 S 577 (712)
T ss_pred C
Confidence 3
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.5e-30 Score=223.28 Aligned_cols=269 Identities=29% Similarity=0.497 Sum_probs=217.4
Q ss_pred eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECC
Q 018784 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132 (350)
Q Consensus 54 ~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~ 132 (350)
+.++.+|.++|.++++++++.++++++.||.|++|+..++.....+ .|...+..+.|+|+++++++++.|+.|++|++.
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 3567899999999999999999999999999999999877654444 577888899999999999999999999999998
Q ss_pred CCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEecCCcEEEEEc-CCcE
Q 018784 133 RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTAD-GSSV 210 (350)
Q Consensus 133 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~~~i 210 (350)
.... ......+...+.++.|.+. +.++++++.|+.|++||+++++....+. +...+..+.++|++.+++++. ++.|
T Consensus 82 ~~~~-~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i 159 (289)
T cd00200 82 TGEC-VRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTI 159 (289)
T ss_pred cccc-eEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcE
Confidence 6533 3334566778999999865 6677788778999999999888887777 456799999999999988887 8999
Q ss_pred EEEECCCcceeeeeecCC-CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEec
Q 018784 211 KFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS 289 (350)
Q Consensus 211 ~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs 289 (350)
++||+++.+.+..+..+. ....+.+.+ +++.+++++.|+.|++||+.+++.+..+..|...+.+++|+|++.++++++
T Consensus 160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 160 KLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EEEEccccccceeEecCccccceEEECC-CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEc
Confidence 999999877776665444 334455555 466888888899999999999988888888999999999999999999999
Q ss_pred CCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccch
Q 018784 290 EDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGK 340 (350)
Q Consensus 290 ~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~ 340 (350)
.|+.|++|++......... ..+...|.++.++++|+
T Consensus 239 ~~~~i~i~~~~~~~~~~~~---------------~~~~~~i~~~~~~~~~~ 274 (289)
T cd00200 239 EDGTIRVWDLRTGECVQTL---------------SGHTNSVTSLAWSPDGK 274 (289)
T ss_pred CCCcEEEEEcCCceeEEEc---------------cccCCcEEEEEECCCCC
Confidence 9999999998653322211 12333566777777653
No 53
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.4e-30 Score=208.98 Aligned_cols=272 Identities=22% Similarity=0.321 Sum_probs=222.7
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceee--eccCccCCeEEEEECC-CCcEEEEeeCCCeEEEe
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG--TFEGHKGAVWSCCLDA-NALFSASGSADFTAKLW 88 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~--~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vW 88 (350)
.++|...|.+|+|+. +|..||+|+.|+++++|+++..+.++ .+.||.+.|--++|+| ...++++++.|.+|++|
T Consensus 16 ~~~~~~~v~Sv~wn~---~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNC---DGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred hhhhhhcceEEEEcc---cCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 379999999999997 99999999999999999998887665 4578999999999875 56799999999999999
Q ss_pred eCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784 89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168 (350)
Q Consensus 89 d~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg 168 (350)
|...+++......+..=.-+.|+|+|++++.++.|..|...|..+....... .....+..+.|..++..++++.+ -|
T Consensus 93 d~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~--~~~~e~ne~~w~~~nd~Fflt~G-lG 169 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEE--QFKFEVNEISWNNSNDLFFLTNG-LG 169 (313)
T ss_pred EeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehh--cccceeeeeeecCCCCEEEEecC-Cc
Confidence 9999998888776655566789999999999999999999998765433222 23445777888855555666654 48
Q ss_pred eEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCC-CceeEecCCCCcEEEE
Q 018784 169 GVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFIA 245 (350)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s 245 (350)
+|.|-...+-+++..++.+ ..+.++.|+|+|+++++++ |..+.+||+...-+++.+.-..- ...++|+- ++++|++
T Consensus 170 ~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~-dg~~lAS 248 (313)
T KOG1407|consen 170 CVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSH-DGRMLAS 248 (313)
T ss_pred eEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEecc-Ccceeec
Confidence 9999998888999999865 5688899999999998765 77899999988777766654332 23455544 6899999
Q ss_pred ecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCC
Q 018784 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSED 291 (350)
Q Consensus 246 g~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~D 291 (350)
||+|..|-|-+..+|+.+..++ +.++-+.++|+|...+||-++.|
T Consensus 249 aSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 249 ASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred cCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 9999999999999999887665 67788999999999999877665
No 54
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.7e-31 Score=209.23 Aligned_cols=250 Identities=24% Similarity=0.363 Sum_probs=208.6
Q ss_pred ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784 52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130 (350)
Q Consensus 52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd 130 (350)
+.++.|.+|+++|+++.++-+|++.+|++.|.+||+|++..+..+.++ .|...|..++.+.|...+++|+.|+.+.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 345688999999999999999999999999999999999999988887 5888999999999999999999999999999
Q ss_pred CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC--ceeEeecC-CCCeEEEEEecCCcEEEEEcC
Q 018784 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG--KIVQTLET-KSPVTSAEVSRDGRYITTADG 207 (350)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~ 207 (350)
+++++.. +....|.+.|..+.|. .+..++++|+.|.++++||.|+. ++++.+.. ...|.++.++. ..+++.+.|
T Consensus 88 V~TGkv~-Rr~rgH~aqVNtV~fN-eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-heIvaGS~D 164 (307)
T KOG0316|consen 88 VNTGKVD-RRFRGHLAQVNTVRFN-EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-HEIVAGSVD 164 (307)
T ss_pred cccCeee-eecccccceeeEEEec-CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-cEEEeeccC
Confidence 9987654 4457789999999986 46778999999999999999865 56666654 45677777664 356667779
Q ss_pred CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEE--EEEcCCCCEE
Q 018784 208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHC--VRFSPGGESY 285 (350)
Q Consensus 208 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~--l~~sp~~~~l 285 (350)
|++|.||+|.+.+...+..+ ...+.++.+ +++..++++.|+++++.|-.+|+.+..++||...=+. .+++.....+
T Consensus 165 GtvRtydiR~G~l~sDy~g~-pit~vs~s~-d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV 242 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYFGH-PITSVSFSK-DGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHV 242 (307)
T ss_pred CcEEEEEeecceeehhhcCC-cceeEEecC-CCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeE
Confidence 99999999998876655432 234455554 6889999999999999999999999999999886544 4566667889
Q ss_pred EEecCCCcEEEecCCCCCccc
Q 018784 286 ASGSEDGTIRIWQTNPPNHEE 306 (350)
Q Consensus 286 asgs~Dg~v~vw~~~~~~~~~ 306 (350)
++||+||.|++||+-......
T Consensus 243 ~sgSEDG~Vy~wdLvd~~~~s 263 (307)
T KOG0316|consen 243 FSGSEDGKVYFWDLVDETQIS 263 (307)
T ss_pred EeccCCceEEEEEeccceeee
Confidence 999999999999987655443
No 55
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-31 Score=219.93 Aligned_cols=286 Identities=20% Similarity=0.364 Sum_probs=222.3
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC-
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA- 90 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~- 90 (350)
+-||++.|+.|+.....| ++.++|.|.+.+||.+++|.|+.++.||.++|+++.|++.+.+++|+|.|++..||..
T Consensus 144 ~~GHkDGiW~Vaa~~tqp---i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~a 220 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQP---ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAA 220 (481)
T ss_pred hcccccceeeehhhcCCc---ceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHh
Confidence 469999999998876555 8999999999999999999999999999999999999999999999999999999962
Q ss_pred -----CCC--------C--------------------------eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784 91 -----LTG--------D--------------------------EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130 (350)
Q Consensus 91 -----~~~--------~--------------------------~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd 130 (350)
... + ++..+ .|...|.++.|-..|+.++++++|++..+||
T Consensus 221 v~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwD 300 (481)
T KOG0300|consen 221 VNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWD 300 (481)
T ss_pred hcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeee
Confidence 110 0 00111 3778899999999999999999999999999
Q ss_pred CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC-ceeEeecCC-CCeEEEEEecCCcEEEEEcCC
Q 018784 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETK-SPVTSAEVSRDGRYITTADGS 208 (350)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~ 208 (350)
++++.....+ .+|....+.+. .++.++++++.+.|-+.++||.+.. ..+..++++ ..+++..|..+.+.+.+++|.
T Consensus 301 VEtge~v~~L-tGHd~ELtHcs-tHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDr 378 (481)
T KOG0300|consen 301 VETGEVVNIL-TGHDSELTHCS-THPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDR 378 (481)
T ss_pred eccCceeccc-cCcchhccccc-cCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCc
Confidence 9987655444 44555565554 4678899999999999999999843 345566654 579999999999999889999
Q ss_pred cEEEEECCCcce-eeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE----eecCCCcCEEEEEEcCCC-
Q 018784 209 SVKFWDANHFGL-VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG----CNKGHHGPVHCVRFSPGG- 282 (350)
Q Consensus 209 ~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~----~~~~h~~~v~~l~~sp~~- 282 (350)
+|++||+++.+. +.++.......-+..+ ..+.+++.--.+..|++||+...+..+ .-++|...|.|++|..+-
T Consensus 379 TvKvWdLrNMRsplATIRtdS~~NRvavs-~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 379 TVKVWDLRNMRSPLATIRTDSPANRVAVS-KGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHP 457 (481)
T ss_pred eEEEeeeccccCcceeeecCCccceeEee-cCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCc
Confidence 999999987642 3333322222222222 123466666667789999997655432 346999999999998653
Q ss_pred -CEEEEecCCCcEEEecCCCCC
Q 018784 283 -ESYASGSEDGTIRIWQTNPPN 303 (350)
Q Consensus 283 -~~lasgs~Dg~v~vw~~~~~~ 303 (350)
.-|++++.|..+.-|++..+.
T Consensus 458 ~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 458 ACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred ccccccccccceeeeeEecccC
Confidence 348899999999999987654
No 56
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-31 Score=214.19 Aligned_cols=241 Identities=22% Similarity=0.268 Sum_probs=196.2
Q ss_pred cCCceeEEEecccCCCccEEEEEeCCCCeeEeeC-CCCceeeeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCC
Q 018784 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG-ETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALT 92 (350)
Q Consensus 15 H~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~-~~~~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~ 92 (350)
-.+.+.+|++++. ....+++++.||+++|||. ....++..++.|...|.++.+++ +...++++|.|++||+|+...
T Consensus 59 ~~D~LfdV~Wse~--~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 59 TEDGLFDVAWSEN--HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred cccceeEeeecCC--CcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 4667889999873 3458999999999999995 34568889999999999999986 456678889999999999988
Q ss_pred CCeeeee-eccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784 93 GDEKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (350)
Q Consensus 93 ~~~~~~~-~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i 170 (350)
...+.++ .|+..|+..+|+| ..+++++++.|+++++||++.+..... +..|...+.++.|++.+..++++|+.|+.|
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v 215 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLV 215 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceE
Confidence 8877776 5899999999999 578899999999999999987755444 667778999999999999999999999999
Q ss_pred EEEECCCCc-eeEeecCC-CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC
Q 018784 171 RLWDARSGK-IVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248 (350)
Q Consensus 171 ~iwd~~~~~-~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 248 (350)
+.||+|+-+ ++..+..+ -.|..+.|+|. ...+|++++.
T Consensus 216 r~wDir~~r~pl~eL~gh~~AVRkvk~Sph----------------------------------------~~~lLaSasY 255 (311)
T KOG0277|consen 216 RGWDIRNLRTPLFELNGHGLAVRKVKFSPH----------------------------------------HASLLASASY 255 (311)
T ss_pred EEEehhhccccceeecCCceEEEEEecCcc----------------------------------------hhhHhhhccc
Confidence 999998754 34444332 24455555542 3567888888
Q ss_pred CCeEEEEEcccCe-eEEeecCCCcCEEEEEEcCC-CCEEEEecCCCcEEEec
Q 018784 249 DMWVHVFDFHTGE-QIGCNKGHHGPVHCVRFSPG-GESYASGSEDGTIRIWQ 298 (350)
Q Consensus 249 d~~i~v~d~~~~~-~~~~~~~h~~~v~~l~~sp~-~~~lasgs~Dg~v~vw~ 298 (350)
|-++++||...++ .+.+..-|+.-|..+.||+- +.++|+.+.|+.++||+
T Consensus 256 DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 256 DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 9999999887554 44555678888999999974 56899999999999997
No 57
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.2e-32 Score=230.26 Aligned_cols=238 Identities=21% Similarity=0.316 Sum_probs=199.1
Q ss_pred cCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee-eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe
Q 018784 61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR 139 (350)
Q Consensus 61 ~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~-~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~ 139 (350)
+..|..|.|.|+|+.|++|+..|.+-+|+..+..-.. ...|...|+++.|++++.++++|+.+|.|++|+..... ...
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKI 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHH
Confidence 3468899999999999999999999999975433222 23699999999999999999999999999999986432 223
Q ss_pred eecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCC
Q 018784 140 EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANH 217 (350)
Q Consensus 140 ~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~ 217 (350)
...+|...|++++|+|.|. .+++|++||+|+|||.+..+....+..+ -.+.+++|+|.-.+++++ .|..|++||.++
T Consensus 175 ~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS 253 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS 253 (464)
T ss_pred hhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC
Confidence 3345568999999998554 5779999999999999988777777654 579999999987666654 578999999999
Q ss_pred cceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCC-CEEEEecCCCcEEE
Q 018784 218 FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGG-ESYASGSEDGTIRI 296 (350)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~-~~lasgs~Dg~v~v 296 (350)
+.++.++..+.+.....-..+++++|+++|.|..+++||+++-+.+.++++|..-|+++.|+|-. .+|.+|+.||.|..
T Consensus 254 g~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh 333 (464)
T KOG0284|consen 254 GSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVH 333 (464)
T ss_pred cchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEE
Confidence 99998887776665444344457999999999999999999989999999999999999999964 57889999999999
Q ss_pred ecCC
Q 018784 297 WQTN 300 (350)
Q Consensus 297 w~~~ 300 (350)
|.+.
T Consensus 334 ~~v~ 337 (464)
T KOG0284|consen 334 WVVG 337 (464)
T ss_pred Eecc
Confidence 9987
No 58
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=6.3e-32 Score=234.74 Aligned_cols=258 Identities=23% Similarity=0.368 Sum_probs=209.3
Q ss_pred CceeeeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCC-CCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEE
Q 018784 51 GDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALT-GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILR 127 (350)
Q Consensus 51 ~~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~-~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~ 127 (350)
.+.+.++.||+..|.++.|.| .+.+|+|+|.|+.|+||++.. +.+++++ .|+.+|+.++|+++|..++|+|.|+.++
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 355778999999999999988 899999999999999999876 6677665 6999999999999999999999999999
Q ss_pred EEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEE-EE
Q 018784 128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT-TA 205 (350)
Q Consensus 128 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~ 205 (350)
+||++++...... +....+.++.|.|++++++++|+.|+.|+.||+|+++.++....+ .++..+.|-++|+.++ ++
T Consensus 284 lwDtETG~~~~~f--~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQVLSRF--HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeccccceEEEEE--ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 9999987654433 334567888888878799999999999999999999988888754 7899999999987655 55
Q ss_pred cCCcEEEEECCCcceeeeeecCCC--CceeEecCCCCcEEEEecCCCeEEEEEcccCee---EEeecCCC--cCEEEEEE
Q 018784 206 DGSSVKFWDANHFGLVKGYNMPCN--TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ---IGCNKGHH--GPVHCVRF 278 (350)
Q Consensus 206 ~~~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~---~~~~~~h~--~~v~~l~~ 278 (350)
+++.+++|+.+....++....+.. ..++...| .+..+++-+.|+.|.+|.+...-. -..+.||. +.-..+.|
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P-~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP-NGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCC-CCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 678999999988766654433222 23344555 578999999999999998754322 33567885 44677899
Q ss_pred cCCCCEEEEecCCCcEEEecCCCCCcccCCCCC
Q 018784 279 SPGGESYASGSEDGTIRIWQTNPPNHEENHSGT 311 (350)
Q Consensus 279 sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~ 311 (350)
||||.+|+||+.||.+.+||..+-.......++
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhccccC
Confidence 999999999999999999999876665544443
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.98 E-value=5.2e-32 Score=226.64 Aligned_cols=232 Identities=18% Similarity=0.382 Sum_probs=188.4
Q ss_pred ccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC
Q 018784 60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP 138 (350)
Q Consensus 60 H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~ 138 (350)
-...|+|+.+ |...++||..|.+|+|||..+..+...+ .|++.|.|+.|. ...+++|+.|.+|++||+.+++...
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 3467888887 4567789999999999999888777665 799999999886 4489999999999999999877654
Q ss_pred eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCcee---Eeec-CCCCeEEEEEecCCcEEEE-EcCCcEEEE
Q 018784 139 REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV---QTLE-TKSPVTSAEVSRDGRYITT-ADGSSVKFW 213 (350)
Q Consensus 139 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~---~~~~-~~~~v~~~~~~~~~~~l~~-~~~~~i~vw 213 (350)
.. -+|...|..+.|+ +.++++|+.|.++.+||+.+...+ +.+. +...++.+.|+. +++++ +.|.+|++|
T Consensus 272 tl-ihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW 345 (499)
T KOG0281|consen 272 TL-IHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVW 345 (499)
T ss_pred HH-hhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecCCceEEEE
Confidence 44 5677778888875 457889999999999999876432 2233 346778777765 46655 468899999
Q ss_pred ECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCc
Q 018784 214 DANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGT 293 (350)
Q Consensus 214 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~ 293 (350)
++.+...++++..+.....+. ...++++++|+.|.+|++||+..|.+++.++||+.-|.++.| |.+.++||+.||+
T Consensus 346 ~~st~efvRtl~gHkRGIACl--QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGk 421 (499)
T KOG0281|consen 346 STSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK 421 (499)
T ss_pred eccceeeehhhhcccccceeh--hccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeeccccce
Confidence 999999999887765443332 224789999999999999999999999999999999999999 5678999999999
Q ss_pred EEEecCCCCCcc
Q 018784 294 IRIWQTNPPNHE 305 (350)
Q Consensus 294 v~vw~~~~~~~~ 305 (350)
|++||+......
T Consensus 422 ikvWdl~aaldp 433 (499)
T KOG0281|consen 422 IKVWDLQAALDP 433 (499)
T ss_pred EEEEecccccCC
Confidence 999999765544
No 60
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=2.1e-29 Score=234.09 Aligned_cols=214 Identities=21% Similarity=0.293 Sum_probs=169.1
Q ss_pred eeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-------ceeeeccCccCCeEEEEECCCC-cEEEEee
Q 018784 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANA-LFSASGS 80 (350)
Q Consensus 9 ~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~-------~~~~~l~gH~~~V~~v~~~~~~-~~l~s~s 80 (350)
+.++.||+++|.+++|+|. ++.+||+||.|++|+|||+.++ +++..|.+|...|.+++|+|++ .+|+|++
T Consensus 68 ~~~l~GH~~~V~~v~fsP~--d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs 145 (493)
T PTZ00421 68 PPILLGQEGPIIDVAFNPF--DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG 145 (493)
T ss_pred CceEeCCCCCEEEEEEcCC--CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe
Confidence 4457899999999999973 5679999999999999998764 3567899999999999999985 6999999
Q ss_pred CCCeEEEeeCCCCCeeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCC-cEEEEEEeCCCC
Q 018784 81 ADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-SIRTVAWLHSDQ 158 (350)
Q Consensus 81 ~Dg~v~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 158 (350)
.|++|+|||+.++.....+. |...|.+++|+|++.+|++++.|++|++||+.++..... ...|.+ ....+.|.+..+
T Consensus 146 ~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t-l~~H~~~~~~~~~w~~~~~ 224 (493)
T PTZ00421 146 ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS-VEAHASAKSQRCLWAKRKD 224 (493)
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEE-EecCCCCcceEEEEcCCCC
Confidence 99999999999888777664 888999999999999999999999999999987654333 334443 345667777666
Q ss_pred cEEEEE---eCCCeEEEEECCCCc-eeEeec--CCCCeEEEEEecCCcEEEEE--cCCcEEEEECCCcceeeeee
Q 018784 159 TILSSC---TDSGGVRLWDARSGK-IVQTLE--TKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYN 225 (350)
Q Consensus 159 ~~~~s~---~~dg~i~iwd~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~~~--~~~~i~vwd~~~~~~~~~~~ 225 (350)
.++++| +.|++|++||+++.. ++.... ....+....|++++.+++++ .|+.|++||+++...+....
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence 666554 357999999998754 333333 23445556788999877654 48899999999887665543
No 61
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.98 E-value=4.6e-30 Score=231.78 Aligned_cols=279 Identities=18% Similarity=0.335 Sum_probs=229.2
Q ss_pred cccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceee--eccCccCCeEE-EEECC-CCcEEEEee
Q 018784 5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG--TFEGHKGAVWS-CCLDA-NALFSASGS 80 (350)
Q Consensus 5 ~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~--~l~gH~~~V~~-v~~~~-~~~~l~s~s 80 (350)
++....++.||+..|..+++. ++..++++|.|+++++|+....+++. .+.+|.+-|.. +++.+ ++-.+++|+
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~----~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~ 78 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVT----DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGG 78 (745)
T ss_pred cceeEEEeccCccchheeEec----CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeec
Confidence 466778889999999999876 45679999999999999987666653 57889998876 78764 555689999
Q ss_pred CCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCc
Q 018784 81 ADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT 159 (350)
Q Consensus 81 ~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (350)
.|++|.+|......+..++ .|...|+++....++. +++||+|.++++|.... ......+|...|++++..+.+
T Consensus 79 ~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~-- 152 (745)
T KOG0301|consen 79 MDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN-- 152 (745)
T ss_pred ccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--
Confidence 9999999999988888876 6999999999887887 89999999999998753 223367899999999998765
Q ss_pred EEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCC-ceeEecC
Q 018784 160 ILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNT-ESASLEP 237 (350)
Q Consensus 160 ~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~ 237 (350)
.+++|+.|.+|++|.- ++.+.++..| ..|..+++-+++.++.+++||.|++|++ ++.++..+..+.+. .+++. .
T Consensus 153 ~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~-~ 228 (745)
T KOG0301|consen 153 TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISM-A 228 (745)
T ss_pred cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEe-c
Confidence 6789999999999974 6777888765 5789999999999999999999999999 56666666655443 34442 3
Q ss_pred CCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 238 KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 238 ~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
..+..++++++|+++++|+.. ++...+.-....||++.+-++|. +++|++||.||||..+
T Consensus 229 ~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 229 LSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred CCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 346899999999999999976 55555554555899999999887 7789999999999876
No 62
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.98 E-value=4.7e-30 Score=216.04 Aligned_cols=270 Identities=22% Similarity=0.364 Sum_probs=212.3
Q ss_pred eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEEC
Q 018784 53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131 (350)
Q Consensus 53 ~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~ 131 (350)
-+.+|..|+++|.+++.+|+..++||||.|....+|++.++.....+ .|+..|.++.|+.+|.+||||+-+|.|+||++
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 45689999999999999999999999999999999999999866655 69999999999999999999999999999999
Q ss_pred CCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCc
Q 018784 132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSS 209 (350)
Q Consensus 132 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~ 209 (350)
.++....... .....+.-+.|. +...+++.|+.||.+.+|.+.++...+.+.. ..++++-.|.|+|+.+.++ ++++
T Consensus 136 stg~~~~~~~-~e~~dieWl~WH-p~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 STGGEQWKLD-QEVEDIEWLKWH-PRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred ccCceEEEee-cccCceEEEEec-ccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 8765544443 233445556665 4778899999999999999998766666665 5689999999999887665 6899
Q ss_pred EEEEECCCcceeeeee------cCCCC---------------c-----------eeEecC--------------------
Q 018784 210 VKFWDANHFGLVKGYN------MPCNT---------------E-----------SASLEP-------------------- 237 (350)
Q Consensus 210 i~vwd~~~~~~~~~~~------~~~~~---------------~-----------~~~~~~-------------------- 237 (350)
|++|++.+..++.... .++.. . ....++
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~ 293 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIP 293 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcc
Confidence 9999999987765544 11100 0 000000
Q ss_pred --CCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCcc
Q 018784 238 --KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQ 315 (350)
Q Consensus 238 --~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~ 315 (350)
..-.++++|+-||+|.|||+...+..+.+ .|+.+|..+.|-+ ..+|++++.||.|++||.+++.
T Consensus 294 ~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~------------ 359 (399)
T KOG0296|consen 294 SSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ------------ 359 (399)
T ss_pred cccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccc------------
Confidence 01236888999999999999876655444 5888999999998 7899999999999999876544
Q ss_pred ccccccccccceeeeeeEEEcccchh
Q 018784 316 TGKLKASTDEVTRKIEGFHINKEGKA 341 (350)
Q Consensus 316 ~~~~~~~~~~~~~~i~~~~~~~~g~~ 341 (350)
++..+..+...|..|.++|+++.
T Consensus 360 ---l~~~y~GH~~~Il~f~ls~~~~~ 382 (399)
T KOG0296|consen 360 ---LKFTYTGHQMGILDFALSPQKRL 382 (399)
T ss_pred ---eEEEEecCchheeEEEEcCCCcE
Confidence 45555666777888888887764
No 63
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=9.5e-30 Score=206.51 Aligned_cols=237 Identities=21% Similarity=0.379 Sum_probs=187.1
Q ss_pred ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC--CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET--GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~--~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~ 91 (350)
||+..|+.++|+| .|++||+||.|.++-||.-+. .+++.+|+||.+.|.+++|+++|.+|||+|.|++|.||++.
T Consensus 59 ~hkrsVRsvAwsp---~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 59 GHKRSVRSVAWSP---HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID 135 (312)
T ss_pred cchheeeeeeecC---CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence 8999999999987 999999999999999999664 47789999999999999999999999999999999999987
Q ss_pred CCCee---eee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC-CCC-CCeeecCCCCcEEEEEEeCCCCcEEEEEe
Q 018784 92 TGDEK---HSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR-PDA-PPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (350)
Q Consensus 92 ~~~~~---~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 165 (350)
...+. ..+ .|...|..+.|||...+|+++|.|.+|++|+-.. ..- ....+..|.+.|.+++|.+.+ ..+++|+
T Consensus 136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~s 214 (312)
T KOG0645|consen 136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCS 214 (312)
T ss_pred CCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-ceEEEec
Confidence 55533 333 5999999999999999999999999999998653 221 123456777899999997654 5678999
Q ss_pred CCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCc------ceeeee--ecCCCCceeEecC
Q 018784 166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHF------GLVKGY--NMPCNTESASLEP 237 (350)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~------~~~~~~--~~~~~~~~~~~~~ 237 (350)
+|++++||...+. ....+..++..+.|. ++.+..++.|+.|++|-.... .++... .......++...|
T Consensus 215 dD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 215 DDGTVSIWRLYTD---LSGMHSRALYDVPWD-NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNP 290 (312)
T ss_pred CCcceEeeeeccC---cchhcccceEeeeec-ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcC
Confidence 9999999986622 112234567888888 777777788899999965431 111100 1112345666777
Q ss_pred CCCcEEEEecCCCeEEEEEcc
Q 018784 238 KLGNIFIAGGEDMWVHVFDFH 258 (350)
Q Consensus 238 ~~~~~l~sg~~d~~i~v~d~~ 258 (350)
...+.|++|+.||.|++|.+.
T Consensus 291 ~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 291 KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCCceeecCCCceEEEEEec
Confidence 667899999999999999864
No 64
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=230.68 Aligned_cols=283 Identities=22% Similarity=0.311 Sum_probs=237.6
Q ss_pred eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (350)
Q Consensus 10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd 89 (350)
+...||-..|..++||. |...++||+. ++++||+.++.++++++.. +-+.+..|-|-++++++|...|.+.++|
T Consensus 367 i~~~GHR~dVRsl~vS~---d~~~~~Sga~-~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfd 440 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSS---DSILLASGAG-ESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFD 440 (888)
T ss_pred eeeccchhheeEEEeec---CceeeeecCC-CcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEE
Confidence 34579999999999986 7777777655 7899999999999999986 4788999999999999999999999999
Q ss_pred CCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC-----CCCCC------eeecCCCCcEEEEEEeCCC
Q 018784 90 ALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR-----PDAPP------REVGNSSGSIRTVAWLHSD 157 (350)
Q Consensus 90 ~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~-----~~~~~------~~~~~~~~~v~~~~~~~~~ 157 (350)
+.......+. .|.+.+.+++.+||++.+++||.|.+|++||..- +.... .....-...|.++.++| +
T Consensus 441 laS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-d 519 (888)
T KOG0306|consen 441 LASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-D 519 (888)
T ss_pred eehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-C
Confidence 9877655544 6999999999999999999999999999999531 11111 01123356788898875 6
Q ss_pred CcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCC-ceeE
Q 018784 158 QTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNT-ESAS 234 (350)
Q Consensus 158 ~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~-~~~~ 234 (350)
+++++.+--|++|++|=+.+-+....+.+| -||.++.++||+++++++ .|..|++|-+.=+.+-+.+..+... ..+.
T Consensus 520 gk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 520 GKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred CcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEE
Confidence 677777888999999999999888887765 599999999999998776 4899999988777777776655444 4556
Q ss_pred ecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 235 ~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
|.| ....+.+++.|+.|+-||-...+++..+.+|...|+|++.+|+|.+++|+|.|..|++|...
T Consensus 600 F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 600 FLP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred Ecc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 666 46889999999999999999999999999999999999999999999999999999999754
No 65
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=5.3e-30 Score=238.45 Aligned_cols=255 Identities=20% Similarity=0.332 Sum_probs=206.0
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~ 91 (350)
+.||++.|++++|.. .+.+|++||.|.++++||..+|++..+|.||++.|.++.. ....+++||.|.+|++|++.
T Consensus 245 l~GH~g~V~~l~~~~---~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPS---GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred ccCCCCCceeEEEec---CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEecc
Confidence 479999999999974 4679999999999999999999999999999999987776 45677889999999999999
Q ss_pred CCCeeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784 92 TGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (350)
Q Consensus 92 ~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i 170 (350)
++..+..+. |...|+++.++ +.++++|+.|++|++||+...+.... ...|.+.|+++.+... ..+++|+.|++|
T Consensus 320 n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~s-l~gH~~~V~sl~~~~~--~~~~Sgs~D~~I 394 (537)
T KOG0274|consen 320 NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKS-LSGHTGRVYSLIVDSE--NRLLSGSLDTTI 394 (537)
T ss_pred CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeee-ecCCcceEEEEEecCc--ceEEeeeeccce
Confidence 999999987 99999999998 88999999999999999986655444 4559999999965432 778899999999
Q ss_pred EEEECCCC-ceeEeecCCCCeEEEEEecCCcEEEE-EcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC
Q 018784 171 RLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248 (350)
Q Consensus 171 ~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 248 (350)
++||+++. +++.++.++..+.. .+...+++|++ +.|++|++||...+++++.+..+ ....+.+.......+++++.
T Consensus 395 kvWdl~~~~~c~~tl~~h~~~v~-~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~~~~il~s~~ 472 (537)
T KOG0274|consen 395 KVWDLRTKRKCIHTLQGHTSLVS-SLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALGKEEILCSSD 472 (537)
T ss_pred EeecCCchhhhhhhhcCCccccc-ccccccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecCcceEEEEec
Confidence 99999999 99999988776552 23334455554 46899999999999999888775 11122221111478999999
Q ss_pred CCeEEEEEcccCeeEEeecCCC-cCEEEEEE
Q 018784 249 DMWVHVFDFHTGEQIGCNKGHH-GPVHCVRF 278 (350)
Q Consensus 249 d~~i~v~d~~~~~~~~~~~~h~-~~v~~l~~ 278 (350)
|+++++||++++.....+-.+. .....+++
T Consensus 473 ~~~~~l~dl~~~~~~~~l~~~~~~~~~~~~~ 503 (537)
T KOG0274|consen 473 DGSVKLWDLRSGTLIRTLLSTDLGATWGVAP 503 (537)
T ss_pred CCeeEEEecccCchhhhhhhccccccccccc
Confidence 9999999999998877663333 23344444
No 66
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.8e-29 Score=233.22 Aligned_cols=284 Identities=19% Similarity=0.331 Sum_probs=209.1
Q ss_pred EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (350)
Q Consensus 11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~ 90 (350)
.|-+|.+||++++|+|..| +++||+.|-+|++|+.+..+++.+|.||-+-|+.+.|++.-..++|+|.|.|||||+-
T Consensus 46 rFdeHdGpVRgv~FH~~qp---lFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNw 122 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQP---LFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNW 122 (1202)
T ss_pred hhhccCCccceeeecCCCC---eEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEec
Confidence 3569999999999998544 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCC---CCCCe-------------------------ee
Q 018784 91 LTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP---DAPPR-------------------------EV 141 (350)
Q Consensus 91 ~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~---~~~~~-------------------------~~ 141 (350)
.+++++..+ .|+..|.|..|+|...+++++|-|.+|||||+..- ...+. ..
T Consensus 123 qsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VL 202 (1202)
T KOG0292|consen 123 QSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVL 202 (1202)
T ss_pred cCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeee
Confidence 999999887 59999999999999999999999999999997421 11000 11
Q ss_pred cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCce--eEe-ecCCCCeEEEEEecCCcEE-EEEcCCcEEEEECCC
Q 018784 142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI--VQT-LETKSPVTSAEVSRDGRYI-TTADGSSVKFWDANH 217 (350)
Q Consensus 142 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~--~~~-~~~~~~v~~~~~~~~~~~l-~~~~~~~i~vwd~~~ 217 (350)
.+|...|.-++|. +.-.+++||++|+.|++|.+...+. +-+ -.+.+.|.++-|+|...++ ..+.|+.||+||+.+
T Consensus 203 EGHDRGVNwaAfh-pTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 203 EGHDRGVNWAAFH-PTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred cccccccceEEec-CCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 2345556666664 4567899999999999999876543 222 2356789999999976655 456799999999998
Q ss_pred cceeeeeecCCCC-ceeEecCCCCcEEEEecC--------------------------CCeEEEEEcccCee--EEeecC
Q 018784 218 FGLVKGYNMPCNT-ESASLEPKLGNIFIAGGE--------------------------DMWVHVFDFHTGEQ--IGCNKG 268 (350)
Q Consensus 218 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~--------------------------d~~i~v~d~~~~~~--~~~~~~ 268 (350)
...++++.-.... ..+..+| ..+++++|-. |..|+-+|+.+.+. +..++.
T Consensus 282 Rt~v~tfrrendRFW~laahP-~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~ 360 (1202)
T KOG0292|consen 282 RTSVQTFRRENDRFWILAAHP-ELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRR 360 (1202)
T ss_pred ccceeeeeccCCeEEEEEecC-CcceeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccC
Confidence 8887777543332 2233333 2344444332 44455555544322 222222
Q ss_pred C---CcCEEEEEEcCCCCE-EEEecCCC-cEEEecC
Q 018784 269 H---HGPVHCVRFSPGGES-YASGSEDG-TIRIWQT 299 (350)
Q Consensus 269 h---~~~v~~l~~sp~~~~-lasgs~Dg-~v~vw~~ 299 (350)
. ..++.+|.++|.... +++...|+ .--++.+
T Consensus 361 ~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~i 396 (1202)
T KOG0292|consen 361 PGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQI 396 (1202)
T ss_pred CCcccCCcceeeeccccCeEEEEeccCCCeEEEEEe
Confidence 2 257889999997554 44444443 4444444
No 67
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.4e-30 Score=237.10 Aligned_cols=246 Identities=21% Similarity=0.358 Sum_probs=202.1
Q ss_pred ecc-CccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC----------------------------Ce-----------
Q 018784 56 TFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDALTG----------------------------DE----------- 95 (350)
Q Consensus 56 ~l~-gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~----------------------------~~----------- 95 (350)
.+. .|.++|+++.|++||+||||||.|+.||||.+... ..
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 445 89999999999999999999999999999976440 00
Q ss_pred ---------------------ee-eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEE
Q 018784 96 ---------------------KH-SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW 153 (350)
Q Consensus 96 ---------------------~~-~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~ 153 (350)
.. ...|...|..+.|+.++ +|++++.|.|||+|++...++.. .-.|..-|+|++|
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~--~F~HndfVTcVaF 417 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLK--VFSHNDFVTCVAF 417 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceee--EEecCCeeEEEEe
Confidence 00 00277889999999765 78999999999999998655433 3468889999999
Q ss_pred eCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCC----
Q 018784 154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPC---- 228 (350)
Q Consensus 154 ~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~---- 228 (350)
.|-|.+++++|+-|++||||++...+.+.-...+.-|+++++.|||++++.|. .|.+++|+....+.........
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 99999999999999999999999888877777778899999999999987664 8999999998877665544321
Q ss_pred -----CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcC--EEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784 229 -----NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGP--VHCVRFSPGGESYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 229 -----~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~--v~~l~~sp~~~~lasgs~Dg~v~vw~~~~ 301 (350)
....+.+.+.....+++.+.|..|||||+++-.++..++|+... =....|+.||++++++|+|.-|+||++..
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 24556677666667888899999999999988888888876543 35678999999999999999999999865
Q ss_pred CCc
Q 018784 302 PNH 304 (350)
Q Consensus 302 ~~~ 304 (350)
...
T Consensus 578 ~~~ 580 (712)
T KOG0283|consen 578 FNS 580 (712)
T ss_pred Ccc
Confidence 554
No 68
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-29 Score=209.75 Aligned_cols=244 Identities=18% Similarity=0.300 Sum_probs=206.3
Q ss_pred eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCC--eEEEeeCCCeEEEE
Q 018784 53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTH--LLLTGGFEKILRIF 129 (350)
Q Consensus 53 ~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~--~l~sg~~d~~v~vw 129 (350)
++..+..|.++|.++++ ++.++||||.|-+|+|||..+..+...+ .|.+.|+++.|.+... .|++|+.||.|.+|
T Consensus 35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 46788999999999998 5899999999999999999888776654 7999999999988765 89999999999999
Q ss_pred ECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCc
Q 018784 130 DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSS 209 (350)
Q Consensus 130 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~ 209 (350)
+..+.. ....+..|.+.|+.++. +|.++++++-+.|+.+++||+-.|+.-..+......+.+.|+|.|.+++.+....
T Consensus 113 ~~~~W~-~~~slK~H~~~Vt~lsi-HPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 113 RVGSWE-LLKSLKAHKGQVTDLSI-HPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNK 190 (362)
T ss_pred EcCCeE-EeeeecccccccceeEe-cCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccE
Confidence 998653 34556788889999986 5677888899999999999999998777777666667799999999888887788
Q ss_pred EEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEc--CCCCEEEE
Q 018784 210 VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFS--PGGESYAS 287 (350)
Q Consensus 210 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s--p~~~~las 287 (350)
|-+|.+.+-...+....+..+.++. +.++.+|++|+.|+.|.+||.++..++..+.+|...|.++.+- |.+.+|+|
T Consensus 191 i~i~q~d~A~v~~~i~~~~r~l~~~--~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvT 268 (362)
T KOG0294|consen 191 IDIYQLDNASVFREIENPKRILCAT--FLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVT 268 (362)
T ss_pred EEEEecccHhHhhhhhccccceeee--ecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEE
Confidence 9999988877666665553333333 3357899999999999999999999999999999999999853 67889999
Q ss_pred ecCCCcEEEecCCCC
Q 018784 288 GSEDGTIRIWQTNPP 302 (350)
Q Consensus 288 gs~Dg~v~vw~~~~~ 302 (350)
+|+||.|++||++..
T Consensus 269 aSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 269 ASSDGFIKVWDIDME 283 (362)
T ss_pred eccCceEEEEEcccc
Confidence 999999999998644
No 69
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-29 Score=228.77 Aligned_cols=247 Identities=21% Similarity=0.351 Sum_probs=213.4
Q ss_pred EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccC-ccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWD 89 (350)
Q Consensus 11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd 89 (350)
.|..+.+.|+++.|++ +|.+||.|..+|.+.|||.+..+.+.++.+ |...|-+++|. ...+.+|+.|+.|..+|
T Consensus 212 l~~~~~~~vtSv~ws~---~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~d 286 (484)
T KOG0305|consen 212 LCSFGEELVTSVKWSP---DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHD 286 (484)
T ss_pred eEecCCCceEEEEECC---CCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEE
Confidence 3455588999999886 999999999999999999999999999999 99999999997 77889999999999999
Q ss_pred CCCCCeeee-e-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe--
Q 018784 90 ALTGDEKHS-F-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT-- 165 (350)
Q Consensus 90 ~~~~~~~~~-~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-- 165 (350)
+...+.... + .|...|..+.|++++.+||+|+.|+.+.|||.... .+......|.+.|.+++|+|-...+||+|+
T Consensus 287 vR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~-~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs 365 (484)
T KOG0305|consen 287 VRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP-EPKFTFTEHTAAVKALAWCPWQSGLLATGGGS 365 (484)
T ss_pred EecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc-cccEEEeccceeeeEeeeCCCccCceEEcCCC
Confidence 877664433 3 58999999999999999999999999999999543 345566789999999999998888888764
Q ss_pred CCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEE
Q 018784 166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245 (350)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 245 (350)
.|+.|++||+.+++.+..+...+.|.++.|++..+-++++.
T Consensus 366 ~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sth--------------------------------------- 406 (484)
T KOG0305|consen 366 ADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTH--------------------------------------- 406 (484)
T ss_pred cccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEec---------------------------------------
Confidence 67899999999999999999999999999998765444332
Q ss_pred ecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784 246 GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP 302 (350)
Q Consensus 246 g~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~ 302 (350)
|..++.|.||++.+.+.+..+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 222445777777777778889999999999999999999999999999999998654
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=1.9e-29 Score=216.64 Aligned_cols=277 Identities=22% Similarity=0.314 Sum_probs=230.2
Q ss_pred ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee
Q 018784 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH 97 (350)
Q Consensus 18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~ 97 (350)
.+.++...| ....++||+.|.++.++|..+.+.+.+|+||+..|..+.++++....++++.|..|+||......+..
T Consensus 221 gi~ald~~~---s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~ 297 (506)
T KOG0289|consen 221 GITALDIIP---SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT 297 (506)
T ss_pred CeeEEeecC---CCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc
Confidence 455554444 35589999999999999999999999999999999999999999999999999999999987665444
Q ss_pred -eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecC-CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784 98 -SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (350)
Q Consensus 98 -~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~ 175 (350)
...|...|+.+..+|.|.+|++++.|+++...|+.++......... ..-.+++.+| |+|+.++.+|..|+.|+|||+
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~f-HpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAF-HPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeE-cCCceEEeccCCCceEEEEEc
Confidence 3469999999999999999999999999999999876654433221 2233555554 678999999999999999999
Q ss_pred CCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCC--CceeEecCCCCcEEEEecCCCe
Q 018784 176 RSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN--TESASLEPKLGNIFIAGGEDMW 251 (350)
Q Consensus 176 ~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~sg~~d~~ 251 (350)
.++..+..+.. ..+|..++|+.||.||+++ +|+.|++||+|+.+.++++..+.. ....+|.. .|.+|+.+++|=.
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~-SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ-SGTYLGIAGSDLQ 455 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC-CCCeEEeecceeE
Confidence 99988887775 4789999999999999876 566799999999999998888765 44555554 5889999988877
Q ss_pred EEEEEc--ccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784 252 VHVFDF--HTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (350)
Q Consensus 252 i~v~d~--~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~ 299 (350)
|++++- ...+++..+..|.+..+.+.|...-++++++|-|..++++.+
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 777763 356778888889999999999999999999999999988743
No 71
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.1e-28 Score=226.19 Aligned_cols=263 Identities=14% Similarity=0.195 Sum_probs=190.7
Q ss_pred cCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCce----------e---eeccCccCCeEEEEECC-CCcEEEEee
Q 018784 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW----------I---GTFEGHKGAVWSCCLDA-NALFSASGS 80 (350)
Q Consensus 15 H~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~----------~---~~l~gH~~~V~~v~~~~-~~~~l~s~s 80 (350)
|-..|....++ +|+..+++++.+.....|+...+.. . ..+.||++.|++++|+| ++.+|+|||
T Consensus 19 ~~~~i~~~~~~---~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS 95 (493)
T PTZ00421 19 HFLNVTPSTAL---WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTAS 95 (493)
T ss_pred ceecccccccc---CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEe
Confidence 33444444333 4766667777777666776433322 1 14789999999999999 889999999
Q ss_pred CCCeEEEeeCCCCC-------eeeee-eccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEE
Q 018784 81 ADFTAKLWDALTGD-------EKHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV 151 (350)
Q Consensus 81 ~Dg~v~vWd~~~~~-------~~~~~-~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~ 151 (350)
.|++|++||+.++. .+..+ .|...|.+++|+|++ ++|++++.|++|++||+.++.. ......|...|.++
T Consensus 96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~-~~~l~~h~~~V~sl 174 (493)
T PTZ00421 96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA-VEVIKCHSDQITSL 174 (493)
T ss_pred CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE-EEEEcCCCCceEEE
Confidence 99999999987542 23333 588999999999985 6899999999999999986543 33445678889999
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCC--eEEEEEecCCcEEE-EE----cCCcEEEEECCCcce-eee
Q 018784 152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP--VTSAEVSRDGRYIT-TA----DGSSVKFWDANHFGL-VKG 223 (350)
Q Consensus 152 ~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~-~~----~~~~i~vwd~~~~~~-~~~ 223 (350)
+|++ ++.++++++.|++|++||+++++.+..+..+.. ...+.|.+++..++ ++ .++.|++||+++... +..
T Consensus 175 a~sp-dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 175 EWNL-DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred EEEC-CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 9986 567888999999999999999998888776532 34567888765554 33 368899999987543 322
Q ss_pred eecCCC-CceeEecCCCCcEEEEec-CCCeEEEEEcccCeeEEeecC-CCcCEEEEEEcCCC
Q 018784 224 YNMPCN-TESASLEPKLGNIFIAGG-EDMWVHVFDFHTGEQIGCNKG-HHGPVHCVRFSPGG 282 (350)
Q Consensus 224 ~~~~~~-~~~~~~~~~~~~~l~sg~-~d~~i~v~d~~~~~~~~~~~~-h~~~v~~l~~sp~~ 282 (350)
...... .....+...++++|++|+ .|+.|++||+.++..+..... +..++..++|.|..
T Consensus 254 ~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 254 VDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred eccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 222221 222233344577777776 599999999999988766543 45678888888853
No 72
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.4e-29 Score=230.73 Aligned_cols=278 Identities=18% Similarity=0.301 Sum_probs=222.2
Q ss_pred CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe
Q 018784 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE 95 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~ 95 (350)
+..|-+++|+|..| .++++-..|.|++||..-+.++..|.+|.++|+.++|+|+..+++|||.|-.|+||+..+.++
T Consensus 9 SsRvKglsFHP~rP---wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc 85 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRP---WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC 85 (1202)
T ss_pred cccccceecCCCCC---EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee
Confidence 45788899999777 889999999999999999999999999999999999999999999999999999999999988
Q ss_pred eeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 018784 96 KHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174 (350)
Q Consensus 96 ~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd 174 (350)
+.++ .|-..|+.+.||+.-.+++++|.|.+||||+..+..+..... +|.--|.|..|. +..-+++|++-|.+||+||
T Consensus 86 lftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFh-ptEDlIVSaSLDQTVRVWD 163 (1202)
T KOG0292|consen 86 LFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFH-PTEDLIVSASLDQTVRVWD 163 (1202)
T ss_pred hhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe-cCceEEEeeccC-CccceEEEecccceEEEEe
Confidence 8876 799999999999999999999999999999998766655443 455566666665 5566889999999999999
Q ss_pred CCCCc-----e------------------------eEeec-CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcc--ee
Q 018784 175 ARSGK-----I------------------------VQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG--LV 221 (350)
Q Consensus 175 ~~~~~-----~------------------------~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~--~~ 221 (350)
+..-+ + .+.+. +...|+.++|+|.--+++++ +|+.|++|.+...+ .+
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv 243 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV 243 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceee
Confidence 74211 0 01111 23468889999987777655 67899999886543 22
Q ss_pred eeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 222 KGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 222 ~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
.+...+.+. .++.|+| ..+++++.|+|++|++||+...+.+.++.--.+.-|.++-+|..+++|. +.|+-+.++.+.
T Consensus 244 DtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAA-gHDsGm~VFkle 321 (1202)
T KOG0292|consen 244 DTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAA-GHDSGMIVFKLE 321 (1202)
T ss_pred hhhhcccCCcceEEecC-ccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeee-ecCCceEEEEEc
Confidence 233333333 4455555 4689999999999999999999988888766778899999999987765 556666666654
No 73
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=4.9e-28 Score=226.12 Aligned_cols=243 Identities=16% Similarity=0.289 Sum_probs=183.5
Q ss_pred EEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEEeeCCCCCe--------eeee-eccccE
Q 018784 36 SASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGDE--------KHSF-EHKHIV 105 (350)
Q Consensus 36 sgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd~~~~~~--------~~~~-~h~~~V 105 (350)
+|+.++.+++|+......+..+.+|.+.|.+++|+|+ +.+|||||.||+|+|||+.++.. ...+ .|...|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 3667889999998888888899999999999999996 78999999999999999875421 1222 588999
Q ss_pred eEEEEcCCCCe-EEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee
Q 018784 106 RACAFSEDTHL-LLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL 184 (350)
Q Consensus 106 ~~~~~~~~~~~-l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~ 184 (350)
.+++|+|++.. |++++.|++|++||+.++...... .+...+.+++|++ ++.++++++.|++|++||+++++.+.++
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i--~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQI--NMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEE--ecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 99999998875 578999999999999876543222 2456799999986 4567777788999999999999988888
Q ss_pred cCCCC-eEE-----EEEecCCcEEEE-EcC----CcEEEEECCC-cceeeeeecCCCCc--eeEecCCCCcEEEEecCCC
Q 018784 185 ETKSP-VTS-----AEVSRDGRYITT-ADG----SSVKFWDANH-FGLVKGYNMPCNTE--SASLEPKLGNIFIAGGEDM 250 (350)
Q Consensus 185 ~~~~~-v~~-----~~~~~~~~~l~~-~~~----~~i~vwd~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~l~sg~~d~ 250 (350)
..+.. +.. ..|++++.++++ +.+ +.|++||++. ..++.......... ...+.+..+.++++|+.|+
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC
Confidence 76542 222 234477766554 544 3799999996 44555544433322 2334455688999999999
Q ss_pred eEEEEEcccCeeEEeec--CCCcCEEEEEEcCCC
Q 018784 251 WVHVFDFHTGEQIGCNK--GHHGPVHCVRFSPGG 282 (350)
Q Consensus 251 ~i~v~d~~~~~~~~~~~--~h~~~v~~l~~sp~~ 282 (350)
.|++|++..+.. ..+. .+..++.+++|.|..
T Consensus 286 tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 286 NCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred eEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 999999987643 2222 256788999999975
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.9e-28 Score=201.84 Aligned_cols=268 Identities=18% Similarity=0.315 Sum_probs=201.9
Q ss_pred CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-Cce-eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC
Q 018784 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GDW-IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~-~~~-~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~ 93 (350)
++.|.+++|||. ...+++.||+|++||+|+++. |.. -+....|.++|.+++|+.+|..+++|+.|+.+++||+.++
T Consensus 27 ~DsIS~l~FSP~--~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 27 EDSISALAFSPQ--ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred ccchheeEeccc--cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 789999999992 345778999999999999876 333 2466779999999999999999999999999999999999
Q ss_pred CeeeeeeccccEeEEEEcCCCC--eEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784 94 DEKHSFEHKHIVRACAFSEDTH--LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (350)
Q Consensus 94 ~~~~~~~h~~~V~~~~~~~~~~--~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~ 171 (350)
+....-.|..+|+.|.|-+... .|+|||+|.+||.||++........ .....++++... ..+++.+..++.|.
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~--~LPeRvYa~Dv~---~pm~vVata~r~i~ 179 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL--QLPERVYAADVL---YPMAVVATAERHIA 179 (347)
T ss_pred CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee--eccceeeehhcc---CceeEEEecCCcEE
Confidence 8777778999999999976554 8999999999999999865443322 234567766543 34667777789999
Q ss_pred EEECCCCce-eEeec--CCCCeEEEEEecCCc-EEEEEcCCcEEEEECCCcceeeeeecCCCC------------ceeEe
Q 018784 172 LWDARSGKI-VQTLE--TKSPVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKGYNMPCNT------------ESASL 235 (350)
Q Consensus 172 iwd~~~~~~-~~~~~--~~~~v~~~~~~~~~~-~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~------------~~~~~ 235 (350)
+++++++.. ...+. ....+.++++.++.. ++.++-.|.+-+..+........+.+.|+. ..+.|
T Consensus 180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~F 259 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAF 259 (347)
T ss_pred EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEe
Confidence 999976632 22222 234567777776554 444555677666655544333333333221 24556
Q ss_pred cCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEE-ecCC
Q 018784 236 EPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYAS-GSED 291 (350)
Q Consensus 236 ~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~las-gs~D 291 (350)
.| ....|++.+.||++.+||-.....+.+...|..+|++.+|+.+|.++|- -|.|
T Consensus 260 hP-~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 260 HP-VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred ec-ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 66 4678999999999999999888888888899999999999999998874 3444
No 75
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=3e-28 Score=201.22 Aligned_cols=271 Identities=18% Similarity=0.262 Sum_probs=206.3
Q ss_pred ccccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCC
Q 018784 4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF 83 (350)
Q Consensus 4 ~~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg 83 (350)
+.+..|. ++.|+.|.|+| .+..|+.+|+||++++|++...+....+. |..++..++|.+ ...+++|+.||
T Consensus 6 ~~l~npP-----~d~IS~v~f~~---~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg 75 (323)
T KOG1036|consen 6 FELENPP-----EDGISSVKFSP---SSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDG 75 (323)
T ss_pred cccCCCC-----hhceeeEEEcC---cCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCc
Confidence 4455555 78899999996 55567778899999999998876554444 899999999976 56678999999
Q ss_pred eEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784 84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163 (350)
Q Consensus 84 ~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s 163 (350)
.||++|+.++.......|...|+|+.+.+....+++||+|++|++||......... ......|.++... +..++.
T Consensus 76 ~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~--~d~~kkVy~~~v~---g~~LvV 150 (323)
T KOG1036|consen 76 QVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGT--FDQGKKVYCMDVS---GNRLVV 150 (323)
T ss_pred eEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccc--cccCceEEEEecc---CCEEEE
Confidence 99999999998888889999999999999888999999999999999875322221 2234478777643 344556
Q ss_pred EeCCCeEEEEECCCCceeEeec---CCCCeEEEEEecCCc-EEEEEcCCc--EEEEECCCcceeeeeecCCC--------
Q 018784 164 CTDSGGVRLWDARSGKIVQTLE---TKSPVTSAEVSRDGR-YITTADGSS--VKFWDANHFGLVKGYNMPCN-------- 229 (350)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~~~~---~~~~v~~~~~~~~~~-~l~~~~~~~--i~vwd~~~~~~~~~~~~~~~-------- 229 (350)
|..|..+.+||+|+.....+.. ..-.+.++++.|++. +++++-+|. +.++|.......+.|.+.|+
T Consensus 151 g~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~ 230 (323)
T KOG1036|consen 151 GTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE 230 (323)
T ss_pred eecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCce
Confidence 6677899999999876544332 345688899998655 445555665 45566653333334443332
Q ss_pred ----CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecC
Q 018784 230 ----TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSE 290 (350)
Q Consensus 230 ----~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~ 290 (350)
...+.|.|. ...|++|+.||.|.+||+.+.+.+..+......|.+++|+.+|..||.++.
T Consensus 231 ~~yPVNai~Fhp~-~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 231 IIYPVNAIAFHPI-HGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEEEeceeEeccc-cceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 224556654 678999999999999999999888888777888999999999999998875
No 76
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.6e-27 Score=186.00 Aligned_cols=280 Identities=20% Similarity=0.289 Sum_probs=215.3
Q ss_pred ccCCceeEEEecccCCCccEEEEEeCCCCeeEee------CC------CCce---eeeccCccCCeEEEEECCCCcEEEE
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRN------GE------TGDW---IGTFEGHKGAVWSCCLDANALFSAS 78 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~------~~------~~~~---~~~l~gH~~~V~~v~~~~~~~~l~s 78 (350)
..+..|.+|+|+| .|.+.|.||+..+.||-. +. ...+ .+.-+.|.++|+|.+|+|+|+++||
T Consensus 30 ~dsqairav~fhp---~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 30 EDSQAIRAVAFHP---AGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred cchhheeeEEecC---CCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEe
Confidence 4567899999997 899999999999998833 11 1111 1233568999999999999999999
Q ss_pred eeCCCeEEEeeCCCCC------eeeeeeccccEeEEEEcC----CCCeEEEeeC-CCeEEEEECCCCCCCCeeecCCCCc
Q 018784 79 GSADFTAKLWDALTGD------EKHSFEHKHIVRACAFSE----DTHLLLTGGF-EKILRIFDLNRPDAPPREVGNSSGS 147 (350)
Q Consensus 79 ~s~Dg~v~vWd~~~~~------~~~~~~h~~~V~~~~~~~----~~~~l~sg~~-d~~v~vwd~~~~~~~~~~~~~~~~~ 147 (350)
||.|.+|++.-.+... ....--|.+.|+.++|-. .+.+|++++. |-.|.+=|..+++ .......|.+.
T Consensus 107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-~~~a~sghtgh 185 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-GFHALSGHTGH 185 (350)
T ss_pred cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC-cceeecCCccc
Confidence 9999999998653222 222224899999999953 3467777654 5556666665544 34455778888
Q ss_pred EEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC--------CCCeEEEEEecCCcEEEEEc-CCcEEEEECCCc
Q 018784 148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--------KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHF 218 (350)
Q Consensus 148 v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~ 218 (350)
|.++- .-.+.++++|+.|.+|++||+|-..++.++.. .+.+.++++.|.|++|+++. |..+.+||+|.+
T Consensus 186 ilaly--swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~ 263 (350)
T KOG0641|consen 186 ILALY--SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGG 263 (350)
T ss_pred EEEEE--EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCC
Confidence 87762 23578999999999999999999988888763 25688999999999999885 778999999999
Q ss_pred ceeeeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccC---e-eEEeecCCCcCEEEEEEcCCCCEEEEecCCCc
Q 018784 219 GLVKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTG---E-QIGCNKGHHGPVHCVRFSPGGESYASGSEDGT 293 (350)
Q Consensus 219 ~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~---~-~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~ 293 (350)
+.++.+.-+... .++.|.| ...|+++|+.|.+|++-|+..- + .+...-.|...+-.+.|+|..-.+++.|.|.+
T Consensus 264 r~iq~f~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt 342 (350)
T KOG0641|consen 264 RMIQRFHPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKT 342 (350)
T ss_pred ceeeeeCCCccceeEEEeCC-CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcce
Confidence 999888765544 3444554 5789999999999999998531 1 23344579999999999999888999999999
Q ss_pred EEEecCC
Q 018784 294 IRIWQTN 300 (350)
Q Consensus 294 v~vw~~~ 300 (350)
+.+|.++
T Consensus 343 ~tlwa~~ 349 (350)
T KOG0641|consen 343 ATLWALN 349 (350)
T ss_pred EEEeccC
Confidence 9999764
No 77
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-28 Score=220.56 Aligned_cols=249 Identities=22% Similarity=0.314 Sum_probs=210.3
Q ss_pred eeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeec-cccEeEEEEcCCCCeEEEeeCCCeEEEEECCC
Q 018784 55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH-KHIVRACAFSEDTHLLLTGGFEKILRIFDLNR 133 (350)
Q Consensus 55 ~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h-~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~ 133 (350)
+.+..|+..|.++.++|....+.++=-.|.|.|||.++...+..+.. .-+|+++.|-+..+++++|+.|..||||+..+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 45666999999999999999999999999999999999888888764 45799999999999999999999999999987
Q ss_pred CCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC-ceeEeecCC-CCeEEEEEecCC--cEEEEEcCCc
Q 018784 134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETK-SPVTSAEVSRDG--RYITTADGSS 209 (350)
Q Consensus 134 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~v~~~~~~~~~--~~l~~~~~~~ 209 (350)
.+.. .....|..-+++++.. |...+++++++|-+|++||-+.+ .+.+++.+| ..|.+++|+|.. .+..++-|++
T Consensus 87 ~ekV-~~FeAH~DyIR~iavH-Pt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT 164 (794)
T KOG0276|consen 87 GEKV-KTFEAHSDYIRSIAVH-PTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT 164 (794)
T ss_pred ceee-EEeeccccceeeeeec-CCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence 6654 4557788999999864 56677889999999999998765 666777765 579999999853 4555667999
Q ss_pred EEEEECCCcceeeeeecCCCC-ceeEecCC-CCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEE
Q 018784 210 VKFWDANHFGLVKGYNMPCNT-ESASLEPK-LGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYAS 287 (350)
Q Consensus 210 i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~las 287 (350)
|++|.+.+..+..++..+... .++.+.+. +..+|++|+.|.+|++||..+..++.++.||...|..+.|+|.-++++|
T Consensus 165 VKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis 244 (794)
T KOG0276|consen 165 VKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS 244 (794)
T ss_pred EEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE
Confidence 999999988887777765443 34444432 3469999999999999999999999999999999999999999999999
Q ss_pred ecCCCcEEEecCCCCCcc
Q 018784 288 GSEDGTIRIWQTNPPNHE 305 (350)
Q Consensus 288 gs~Dg~v~vw~~~~~~~~ 305 (350)
||+||+||||+..+.+++
T Consensus 245 gsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 245 GSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred ecCCccEEEecCcceehh
Confidence 999999999987665544
No 78
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=4.2e-28 Score=209.84 Aligned_cols=283 Identities=17% Similarity=0.254 Sum_probs=224.0
Q ss_pred eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCcee----ee------------c--cCccCCeEEEEECC
Q 018784 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWI----GT------------F--EGHKGAVWSCCLDA 71 (350)
Q Consensus 10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~----~~------------l--~gH~~~V~~v~~~~ 71 (350)
.+...|.-++.+|+++| |.+++.+++.|++|.=|+..+++.. .. . ++|...|.++++++
T Consensus 136 ~~~~~H~~s~~~vals~---d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~ 212 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSP---DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS 212 (479)
T ss_pred eeeccccCcceEEEeec---cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence 34568999999999886 9999999999999999998877632 01 1 37889999999999
Q ss_pred CCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEE
Q 018784 72 NALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT 150 (350)
Q Consensus 72 ~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~ 150 (350)
|+++||||+.|..|.||+..+.+.+..+ .|.+.|.+++|-.....|++++.|++|++|+++..... ..+-.|...|..
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v-etlyGHqd~v~~ 291 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV-ETLYGHQDGVLG 291 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH-HHHhCCccceee
Confidence 9999999999999999999999988875 69999999999988889999999999999999754433 333456677888
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCC
Q 018784 151 VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNT 230 (350)
Q Consensus 151 ~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~ 230 (350)
+..+. -++++..|+.|+++++|++.....+....+...+.+++|-.+..+++++++|.|.+|++-+.+++.....+...
T Consensus 292 IdaL~-reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv 370 (479)
T KOG0299|consen 292 IDALS-RERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGV 370 (479)
T ss_pred echhc-ccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccc
Confidence 87663 56678888899999999996555554455566899999999999999999999999999888877665443211
Q ss_pred -------------ceeEecCCCCcEEEEecCCCeEEEEEcccC-e---eEEeecCCCcCEEEEEEcCCCCE-EEEecCCC
Q 018784 231 -------------ESASLEPKLGNIFIAGGEDMWVHVFDFHTG-E---QIGCNKGHHGPVHCVRFSPGGES-YASGSEDG 292 (350)
Q Consensus 231 -------------~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~-~---~~~~~~~h~~~v~~l~~sp~~~~-lasgs~Dg 292 (350)
..+... ...+++++|+.+|.|++|.+.++ + ++..+. -.+.|++++|+++|+. +|..+...
T Consensus 371 ~~~~~~~~~~~Witsla~i-~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEh 448 (479)
T KOG0299|consen 371 IPELDPVNGNFWITSLAVI-PGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEH 448 (479)
T ss_pred cCCccccccccceeeeEec-ccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEeccccc
Confidence 112222 34689999999999999999887 2 233333 5678999999999995 45556666
Q ss_pred cEEEecC
Q 018784 293 TIRIWQT 299 (350)
Q Consensus 293 ~v~vw~~ 299 (350)
.+-=|-.
T Consensus 449 RlGRW~~ 455 (479)
T KOG0299|consen 449 RLGRWWC 455 (479)
T ss_pred ccceeeE
Confidence 6666643
No 79
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4e-28 Score=200.95 Aligned_cols=240 Identities=16% Similarity=0.217 Sum_probs=196.1
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCc--EEEEeeCCCeEEEee
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--FSASGSADFTAKLWD 89 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~--~l~s~s~Dg~v~vWd 89 (350)
+..|.+++++++++ |.++||||+|.+|+|||..+...+..+-.|++.|+++.|.+.-. .|.+|+.||.|.+|+
T Consensus 39 ~~aH~~sitavAVs-----~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 39 FSAHAGSITALAVS-----GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccccceeEEEec-----ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 36899999999985 67999999999999999999999999999999999999987654 789999999999999
Q ss_pred CCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784 90 ALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168 (350)
Q Consensus 90 ~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg 168 (350)
...-....++ .|++.|+.++.||.+++.++.+.|+.+++||+-++......- -......+.|++.+.++++++. .
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~--L~~~at~v~w~~~Gd~F~v~~~--~ 189 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLN--LKNKATLVSWSPQGDHFVVSGR--N 189 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeec--cCCcceeeEEcCCCCEEEEEec--c
Confidence 9887777776 589999999999999999999999999999997654433222 2233445889977776766543 4
Q ss_pred eEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCce--eEecCCCCcEEEEe
Q 018784 169 GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTES--ASLEPKLGNIFIAG 246 (350)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~sg 246 (350)
.|-+|.+.+...+..+..+..+.++.|...+.+++++++..|++||.....+...+..+.+... ..+..+.+.+|++.
T Consensus 190 ~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTa 269 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTA 269 (362)
T ss_pred EEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEe
Confidence 8999999998888888777778888888888888899999999999987666555555444332 22344457899999
Q ss_pred cCCCeEEEEEcccC
Q 018784 247 GEDMWVHVFDFHTG 260 (350)
Q Consensus 247 ~~d~~i~v~d~~~~ 260 (350)
++||.|++||++..
T Consensus 270 SSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 270 SSDGFIKVWDIDME 283 (362)
T ss_pred ccCceEEEEEcccc
Confidence 99999999998765
No 80
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-28 Score=209.96 Aligned_cols=278 Identities=21% Similarity=0.310 Sum_probs=212.9
Q ss_pred eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe---eeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEE
Q 018784 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE---KHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIF 129 (350)
Q Consensus 54 ~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~---~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vw 129 (350)
...|..|++.|+.+.|+++|++|||++.|.+..+|++..... ..++ .|..+|..+.|+||.++|++++.|..+++|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 357889999999999999999999999999999998754433 3333 588999999999999999999999999999
Q ss_pred ECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC--CCCeEEEEEecCCcEEEE-Ec
Q 018784 130 DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITT-AD 206 (350)
Q Consensus 130 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~-~~ 206 (350)
|+.++.........+...+.+++|.|++ ..+++|+.|++|..||+.. ......+. ...+..+++++||+++.. ..
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~ 374 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTV 374 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCc-chhhcccccccceeEEEEEcCCCcEEEEEec
Confidence 9998887666655567889999999754 4577889999999999863 33333332 246889999999988754 56
Q ss_pred CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcC--EEEEEEcC-CCC
Q 018784 207 GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGP--VHCVRFSP-GGE 283 (350)
Q Consensus 207 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~--v~~l~~sp-~~~ 283 (350)
|..|++++..+...+.....+....+.+++ .+++++++.=.+..|++||+.+...+..+.||... |-.-+|-- +..
T Consensus 375 d~~i~l~~~e~~~dr~lise~~~its~~iS-~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 375 DKKIRLYNREARVDRGLISEEQPITSFSIS-KDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred ccceeeechhhhhhhccccccCceeEEEEc-CCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcc
Confidence 889999998765544333333334444444 36899999999999999999988888899999764 44445653 447
Q ss_pred EEEEecCCCcEEEecCCCCCcccCCCCCC--------Cccccc-cccccccceeeeeeEE
Q 018784 284 SYASGSEDGTIRIWQTNPPNHEENHSGTG--------NAQTGK-LKASTDEVTRKIEGFH 334 (350)
Q Consensus 284 ~lasgs~Dg~v~vw~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~i~~~~ 334 (350)
++||||+|+.|+||+....+.....+||. +++... +....|+-+-+|.|+.
T Consensus 454 fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred eEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999999999998888877776664 222222 2233355566666543
No 81
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.3e-28 Score=196.82 Aligned_cols=241 Identities=24% Similarity=0.377 Sum_probs=184.8
Q ss_pred eeEEEecccCCCccEEEEEe-----CCCCeeEeeCCCCceeeeccC--ccCCeEEEEECCCC-cEEEEeeCCCeEEEeeC
Q 018784 19 VVDLFYSPITPDGFFLVSAS-----KDSSPMLRNGETGDWIGTFEG--HKGAVWSCCLDANA-LFSASGSADFTAKLWDA 90 (350)
Q Consensus 19 v~~~~~~~~s~dg~~lasgs-----~d~~v~iw~~~~~~~~~~l~g--H~~~V~~v~~~~~~-~~l~s~s~Dg~v~vWd~ 90 (350)
=+++.|||+.++--.+|++. ..|++.|-+....+-+..+.. -.+.+..|+|++.. ..+++++.||++|+||.
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 36789999887533334443 367888888764444443332 34778899998764 57789999999999996
Q ss_pred CCCC-eeeee-eccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC
Q 018784 91 LTGD-EKHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (350)
Q Consensus 91 ~~~~-~~~~~-~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d 167 (350)
.... +++.+ +|+..|.++.|++ .+..++++++|++||+|+...+..... ...|...|+..+|+|..+.++++++.|
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T-f~gh~~~Iy~a~~sp~~~nlfas~Sgd 169 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT-FNGHNSCIYQAAFSPHIPNLFASASGD 169 (311)
T ss_pred CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe-ecCCccEEEEEecCCCCCCeEEEccCC
Confidence 4432 44444 6999999999998 567788899999999999987665443 566888999999999999999999999
Q ss_pred CeEEEEECCC-CceeEeecC-CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEE
Q 018784 168 GGVRLWDARS-GKIVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245 (350)
Q Consensus 168 g~i~iwd~~~-~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 245 (350)
+++++||++. |+.+. +.. ..++.++.|+. .+.+++++
T Consensus 170 ~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~k----------------------------------------y~~~vl~T 208 (311)
T KOG0277|consen 170 GTLRLWDVRSPGKFMS-IEAHNSEILCCDWSK----------------------------------------YNHNVLAT 208 (311)
T ss_pred ceEEEEEecCCCceeE-EEeccceeEeecccc----------------------------------------cCCcEEEe
Confidence 9999999985 44444 443 33666655553 23567788
Q ss_pred ecCCCeEEEEEcccC-eeEEeecCCCcCEEEEEEcCCC-CEEEEecCCCcEEEecCCC
Q 018784 246 GGEDMWVHVFDFHTG-EQIGCNKGHHGPVHCVRFSPGG-ESYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 246 g~~d~~i~v~d~~~~-~~~~~~~~h~~~v~~l~~sp~~-~~lasgs~Dg~v~vw~~~~ 301 (350)
|+.|+.|+.||++.- .++..+.+|.-.|..++|||.- .+|||+|.|-+++|||...
T Consensus 209 g~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 209 GGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER 266 (311)
T ss_pred cCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEeccccc
Confidence 888888888888764 4567788999999999999974 6789999999999999753
No 82
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=7.9e-28 Score=227.56 Aligned_cols=282 Identities=17% Similarity=0.270 Sum_probs=222.3
Q ss_pred cCCceeEEEecccCCCccEEEEEe--CCCCeeEeeCCC------------CceeeeccCccCCeEEEEECCCCcEEEEee
Q 018784 15 HSRPVVDLFYSPITPDGFFLVSAS--KDSSPMLRNGET------------GDWIGTFEGHKGAVWSCCLDANALFSASGS 80 (350)
Q Consensus 15 H~~~v~~~~~~~~s~dg~~lasgs--~d~~v~iw~~~~------------~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s 80 (350)
|+..|..+..+| ||..+|||+ .|+.++||+.+. .+.+.++..|.+.|.|+.|++||++||+||
T Consensus 12 ~~~~IfSIdv~p---dg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHP---DGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred CCeeEEEEEecC---CceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 345788887775 999999999 899999999542 234567788999999999999999999999
Q ss_pred CCCeEEEeeCCC----------CC--------eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee
Q 018784 81 ADFTAKLWDALT----------GD--------EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV 141 (350)
Q Consensus 81 ~Dg~v~vWd~~~----------~~--------~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~ 141 (350)
.|+.|.||+... +. +...+ .|.+.|..++|+|++.+|++++.|++|.+|+..+. ...+.+
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl 167 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVL 167 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeee
Confidence 999999998762 10 11222 59999999999999999999999999999999887 455666
Q ss_pred cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-------CCCeEEEEEecCCcEEEEEc---C--Cc
Q 018784 142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-------KSPVTSAEVSRDGRYITTAD---G--SS 209 (350)
Q Consensus 142 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~---~--~~ 209 (350)
..|.+.|..+.|.| -++++++-++|++|++|++.+....+.+.. ..-+..+.|+|||++|++.. + ..
T Consensus 168 ~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~ 246 (942)
T KOG0973|consen 168 RGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKST 246 (942)
T ss_pred ecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcce
Confidence 78889999999975 566888999999999999877666555543 24578899999999998753 2 36
Q ss_pred EEEEECCCcceeeeeecCCCC-ceeEecCC----C--------C----cEEEEecCCCeEEEEEcccCeeEEeec-CCCc
Q 018784 210 VKFWDANHFGLVKGYNMPCNT-ESASLEPK----L--------G----NIFIAGGEDMWVHVFDFHTGEQIGCNK-GHHG 271 (350)
Q Consensus 210 i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~----~--------~----~~l~sg~~d~~i~v~d~~~~~~~~~~~-~h~~ 271 (350)
+.|.+-.+++.-..+-.+... ..+.|+|. . . .++++|+.|+.|-||.....+++.... -...
T Consensus 247 ~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 247 IAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred eEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 888887776655555554443 33344431 0 1 278999999999999987777765443 2345
Q ss_pred CEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784 272 PVHCVRFSPGGESYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 272 ~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~ 301 (350)
+|..|+|+|||-.|+.+|.||+|.+.....
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 799999999999999999999999998753
No 83
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.2e-26 Score=216.92 Aligned_cols=225 Identities=14% Similarity=0.218 Sum_probs=174.6
Q ss_pred EeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCCCC-------CCeeecCCCCcE
Q 018784 78 SGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDA-------PPREVGNSSGSI 148 (350)
Q Consensus 78 s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~-------~~~~~~~~~~~v 148 (350)
+||.++.|++|+.........+ .|...|.+++|+|+ +.+|++|+.|++|++||+..... +......|...|
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 4778999999998776655555 58999999999996 78999999999999999975321 122346688899
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecC
Q 018784 149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP 227 (350)
Q Consensus 149 ~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~ 227 (350)
.+++|.|....++++++.|++|++||+++++.+..+.++..+.+++|+|+|.+|+++ .|+.|++||+++...+..+..+
T Consensus 129 ~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 129 SIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 999999877778889999999999999999888877777889999999999998866 5889999999998887776655
Q ss_pred CCCc-eeEec----CCCCcEEEEecCC----CeEEEEEccc-CeeEEeec--CCCcCEEEEEEcCCCCEEEEecCCCcEE
Q 018784 228 CNTE-SASLE----PKLGNIFIAGGED----MWVHVFDFHT-GEQIGCNK--GHHGPVHCVRFSPGGESYASGSEDGTIR 295 (350)
Q Consensus 228 ~~~~-~~~~~----~~~~~~l~sg~~d----~~i~v~d~~~-~~~~~~~~--~h~~~v~~l~~sp~~~~lasgs~Dg~v~ 295 (350)
.... ...+. ..++.++++++.| +.|+|||+++ +..+.... .+.+.+......+++.++++|+.|+.|+
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr 288 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCR 288 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEE
Confidence 4321 11111 1346777777665 3799999985 45554433 3444455555566789999999999999
Q ss_pred EecCCCC
Q 018784 296 IWQTNPP 302 (350)
Q Consensus 296 vw~~~~~ 302 (350)
+|++...
T Consensus 289 ~~e~~~~ 295 (568)
T PTZ00420 289 YYQHSLG 295 (568)
T ss_pred EEEccCC
Confidence 9998654
No 84
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.7e-28 Score=206.42 Aligned_cols=202 Identities=25% Similarity=0.353 Sum_probs=177.2
Q ss_pred eEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC-------------------------CCceeeeccCccCCe
Q 018784 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-------------------------TGDWIGTFEGHKGAV 64 (350)
Q Consensus 10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~-------------------------~~~~~~~l~gH~~~V 64 (350)
.+|+||+.+|-+|...+ +|..+++||.|.+++||+.+ +..++.+|+||+++|
T Consensus 187 ~~~~GHk~~V~sVsv~~---sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~V 263 (423)
T KOG0313|consen 187 KVCRGHKRSVDSVSVDS---SGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPV 263 (423)
T ss_pred hHhcccccceeEEEecC---CCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccce
Confidence 45789999999998775 99999999999999999922 234567899999999
Q ss_pred EEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCC--CCeeec
Q 018784 65 WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA--PPREVG 142 (350)
Q Consensus 65 ~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~--~~~~~~ 142 (350)
.+|.|++ ...+.|+|.|.+||.||++++..+.++.-+....+++++|..++|++|+.|..+++||.+.+.. +...+.
T Consensus 264 s~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~ 342 (423)
T KOG0313|consen 264 SSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLI 342 (423)
T ss_pred eeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeee
Confidence 9999987 7778999999999999999999999988888999999999999999999999999999976543 334567
Q ss_pred CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc-eeEeecC-CCCeEEEEEecCCcEEEEEcCCcEEEEEC
Q 018784 143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDA 215 (350)
Q Consensus 143 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~-~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~i~vwd~ 215 (350)
.|.+.|.++.|+|.+..++++++.|+++++||+|+.+ ++..+.. ...+.++.|+..+.++.++.|.+|+++..
T Consensus 343 gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 343 GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence 8899999999999999999999999999999999987 7888775 46799999998777777788999999864
No 85
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=3e-27 Score=194.69 Aligned_cols=245 Identities=18% Similarity=0.288 Sum_probs=191.2
Q ss_pred ccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCC-C--eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCC
Q 018784 60 HKGAVWSCCLDA-NALFSASGSADFTAKLWDALTG-D--EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD 135 (350)
Q Consensus 60 H~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~-~--~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~ 135 (350)
..+.|.+++|+| ...+++.+|.|++||+|++... . .+....|.++|.+++|+.+|..+++|+-|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 457899999999 5667779999999999998753 3 33345799999999999999999999999999999998763
Q ss_pred CCCeeecCCCCcEEEEEEeCCCC-cEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEE
Q 018784 136 APPREVGNSSGSIRTVAWLHSDQ-TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWD 214 (350)
Q Consensus 136 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd 214 (350)
....+.|.+.|.++.|.+... .++++|+.|++|++||+|+..++.+++.+..+.++.+-.. -.+++..++.|.+|+
T Consensus 106 --~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~p-m~vVata~r~i~vyn 182 (347)
T KOG0647|consen 106 --VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYP-MAVVATAERHIAVYN 182 (347)
T ss_pred --eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCc-eeEEEecCCcEEEEE
Confidence 456788999999999996543 5889999999999999999999999999888877655432 233444678999999
Q ss_pred CCCcc-eeeeeecCCC--CceeEecCCCCcEEEEecCCCeEEEEEcccC--eeEEeecCCCc---------CEEEEEEcC
Q 018784 215 ANHFG-LVKGYNMPCN--TESASLEPKLGNIFIAGGEDMWVHVFDFHTG--EQIGCNKGHHG---------PVHCVRFSP 280 (350)
Q Consensus 215 ~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~--~~~~~~~~h~~---------~v~~l~~sp 280 (350)
++... ..+....+.. ..++.... +...++.|+.+|.+.+..+..+ ..-.+++.|.. +|++++|+|
T Consensus 183 L~n~~te~k~~~SpLk~Q~R~va~f~-d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQTRCVACFQ-DKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred cCCCcchhhhhcCcccceeeEEEEEe-cCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec
Confidence 96643 3333333322 33444443 3455699999999999988876 44455666652 478899999
Q ss_pred CCCEEEEecCCCcEEEecCCCCCcccCC
Q 018784 281 GGESYASGSEDGTIRIWQTNPPNHEENH 308 (350)
Q Consensus 281 ~~~~lasgs~Dg~v~vw~~~~~~~~~~~ 308 (350)
.-..|+|.+.||+..+||.+....+...
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s 289 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTS 289 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhcc
Confidence 9889999999999999998766655443
No 86
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.96 E-value=8.8e-26 Score=199.83 Aligned_cols=267 Identities=16% Similarity=0.146 Sum_probs=196.6
Q ss_pred cEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEE-EEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEE
Q 018784 32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFS-ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAF 110 (350)
Q Consensus 32 ~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l-~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~ 110 (350)
++++|++.|+.+++||..+++.+..+.+|.. +..++|++++..+ ++++.|+.|++||..+++....+.....+..++|
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~ 80 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFAL 80 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEE
Confidence 4789999999999999999999988887654 6789999999865 6778899999999988877665544444678899
Q ss_pred cCCCCeEEE-eeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC-CeEEEEECCCCceeEeecCCC
Q 018784 111 SEDTHLLLT-GGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-GGVRLWDARSGKIVQTLETKS 188 (350)
Q Consensus 111 ~~~~~~l~s-g~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-g~i~iwd~~~~~~~~~~~~~~ 188 (350)
+|+++.+++ ++.|+.+++||+.+....... . ....+..++|++.+. +++++..+ ..+.+||.++++....+....
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~-~-~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 157 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIETRKVLAEI-P-VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYEIVDNVLVDQ 157 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCeEEeEe-e-CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCeEEEEEEcCC
Confidence 999987755 456899999999764322211 1 223456788876544 55555554 457788999887766655555
Q ss_pred CeEEEEEecCCcEEE-EE-cCCcEEEEECCCcceeeeeecCC--------CCceeEecCCCCcE-EEEecCCCeEEEEEc
Q 018784 189 PVTSAEVSRDGRYIT-TA-DGSSVKFWDANHFGLVKGYNMPC--------NTESASLEPKLGNI-FIAGGEDMWVHVFDF 257 (350)
Q Consensus 189 ~v~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-l~sg~~d~~i~v~d~ 257 (350)
....+.|+|++++++ ++ .++.|++||+++.+.+..+.... ....+.+.+. +++ +++.+.++.|.+||+
T Consensus 158 ~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d-g~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD-GKTAFVALGPANRVAVVDA 236 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC-CCEEEEEcCCCCeEEEEEC
Confidence 567789999998774 43 37899999999887766554321 1123445554 444 555566778999999
Q ss_pred ccCeeEEeecCCCcCEEEEEEcCCCCEEEEe-cCCCcEEEecCCCCCc
Q 018784 258 HTGEQIGCNKGHHGPVHCVRFSPGGESYASG-SEDGTIRIWQTNPPNH 304 (350)
Q Consensus 258 ~~~~~~~~~~~h~~~v~~l~~sp~~~~lasg-s~Dg~v~vw~~~~~~~ 304 (350)
.+++.+..+. +...+++++|+|++++|+++ +.++.|++||+...+.
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 237 KTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 9888765543 34578999999999998876 5699999999876554
No 87
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8e-28 Score=215.97 Aligned_cols=294 Identities=22% Similarity=0.312 Sum_probs=225.9
Q ss_pred ccccceeEee-----ccCCcee---EEEecccCCCccEEEEEeCCCCeeEeeCC--CCc----eeeeccCccCCeEEEEE
Q 018784 4 RKVAVPLVCH-----GHSRPVV---DLFYSPITPDGFFLVSASKDSSPMLRNGE--TGD----WIGTFEGHKGAVWSCCL 69 (350)
Q Consensus 4 ~~~~~~~~~~-----gH~~~v~---~~~~~~~s~dg~~lasgs~d~~v~iw~~~--~~~----~~~~l~gH~~~V~~v~~ 69 (350)
.++.+.+|++ -|-..|. .+..++ |.+++|.||+.||.|++|+.. .++ .+..++.|++-|.-+..
T Consensus 4 kk~kvsyVi~D~~e~qn~~~v~~~~~Lq~da--~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL 81 (735)
T KOG0308|consen 4 KKKKVSYVIRDENEKQNRNGVNITKALQLDA--PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIIL 81 (735)
T ss_pred ceeEEEEEccchhhhhccccccchhhccccC--CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHh
Confidence 3456666653 2444454 444444 678899999999999999963 222 46789999999999999
Q ss_pred CCCCcEEEEeeCCCeEEEeeCCCCC--eeeee-eccccEeEEEE-cCCCCeEEEeeCCCeEEEEECCCCCC---------
Q 018784 70 DANALFSASGSADFTAKLWDALTGD--EKHSF-EHKHIVRACAF-SEDTHLLLTGGFEKILRIFDLNRPDA--------- 136 (350)
Q Consensus 70 ~~~~~~l~s~s~Dg~v~vWd~~~~~--~~~~~-~h~~~V~~~~~-~~~~~~l~sg~~d~~v~vwd~~~~~~--------- 136 (350)
..+++.|+|+|.|.+|++|+...+. +..++ .|+..|.|+++ .++..++|+||-|+.|.+||++.+..
T Consensus 82 ~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~ 161 (735)
T KOG0308|consen 82 CGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV 161 (735)
T ss_pred hcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc
Confidence 8999999999999999999987663 44444 59999999999 88999999999999999999986522
Q ss_pred C-CeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEE-EEEcCCcEEEE
Q 018784 137 P-PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYI-TTADGSSVKFW 213 (350)
Q Consensus 137 ~-~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~~~~~i~vw 213 (350)
. .....++...+++++.. +.+.++++|+-.+.|++||.++++.+..+.++ ..|..+..++||..+ .+++|++|++|
T Consensus 162 t~~sl~sG~k~siYSLA~N-~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlW 240 (735)
T KOG0308|consen 162 TVNSLGSGPKDSIYSLAMN-QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLW 240 (735)
T ss_pred ccccCCCCCccceeeeecC-CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEee
Confidence 0 11222567788998865 44578999999999999999999888888765 568999999999655 56689999999
Q ss_pred ECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCc
Q 018784 214 DANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGT 293 (350)
Q Consensus 214 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~ 293 (350)
|++..+++.++..+..........+.-.++.+|+.|+.|..=|+++......+-....+|..+..+...+-+-.+..|+.
T Consensus 241 dLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~ 320 (735)
T KOG0308|consen 241 DLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSS 320 (735)
T ss_pred eccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeecccc
Confidence 99999999998877655433333344578999999999999999885433223234456777777755555577888999
Q ss_pred EEEecCC
Q 018784 294 IRIWQTN 300 (350)
Q Consensus 294 v~vw~~~ 300 (350)
|+-|...
T Consensus 321 I~rW~~~ 327 (735)
T KOG0308|consen 321 IKRWKLE 327 (735)
T ss_pred ceecCCc
Confidence 9999764
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.9e-27 Score=205.32 Aligned_cols=234 Identities=19% Similarity=0.310 Sum_probs=193.7
Q ss_pred CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEEeeCCCCC
Q 018784 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGD 94 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd~~~~~ 94 (350)
.+.|+++.|.. ||++||.|...|.|+|+|..+...++.|.+|+.+|..+.|+|+ ++.+++|+.|+.+++||+.+..
T Consensus 68 k~~v~s~~fR~---DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~ 144 (487)
T KOG0310|consen 68 KDVVYSVDFRS---DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY 144 (487)
T ss_pred ccceeEEEeec---CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE
Confidence 56788998886 9999999999999999997776678899999999999999986 4678899999999999998887
Q ss_pred eeeee-eccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEE
Q 018784 95 EKHSF-EHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL 172 (350)
Q Consensus 95 ~~~~~-~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i 172 (350)
.+..+ .|+..|+|.+|+|. +.+++|||.||+||+||+.... .....-.|..+|..+.+.|++. ++++|+. ..|++
T Consensus 145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs-~iasAgG-n~vkV 221 (487)
T KOG0310|consen 145 VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLALPSGS-LIASAGG-NSVKV 221 (487)
T ss_pred EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEEcCCCC-EEEEcCC-CeEEE
Confidence 54333 69999999999995 5689999999999999998654 3444567888999999987655 5556655 58999
Q ss_pred EECCCCc-eeEeec-CCCCeEEEEEecCCcEE-EEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCC
Q 018784 173 WDARSGK-IVQTLE-TKSPVTSAEVSRDGRYI-TTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED 249 (350)
Q Consensus 173 wd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l-~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 249 (350)
||+-+|. .+..+. ++..|+++.+..++..| +++-|+.+++||..+++.+....++....++.+.+ +++.++.|-.+
T Consensus 222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~-dd~t~viGmsn 300 (487)
T KOG0310|consen 222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSP-DDQTVVIGMSN 300 (487)
T ss_pred EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEecC-CCceEEEeccc
Confidence 9998664 444443 67889999999887655 55569999999999999999999998888888887 46888999999
Q ss_pred CeEEEEE
Q 018784 250 MWVHVFD 256 (350)
Q Consensus 250 ~~i~v~d 256 (350)
|.+-+=+
T Consensus 301 Glv~~rr 307 (487)
T KOG0310|consen 301 GLVSIRR 307 (487)
T ss_pred ceeeeeh
Confidence 8766543
No 89
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=2.8e-28 Score=208.28 Aligned_cols=272 Identities=19% Similarity=0.260 Sum_probs=214.7
Q ss_pred CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC--eeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEE
Q 018784 51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD--EKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILR 127 (350)
Q Consensus 51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~--~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~ 127 (350)
.+....+..|.+.|..+.|-++...|+||+.|..|++|+....+ ...++. -.+.++.++|.+++..+++++.|+.++
T Consensus 165 S~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 165 SRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence 34556788999999999999998899999999999999986555 233343 346799999999999999999999999
Q ss_pred EEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE-c
Q 018784 128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-D 206 (350)
Q Consensus 128 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 206 (350)
+|++........+ ..|...|+++.|..... .+++|+.|.+|++||+....+..++-..+.++.+... ...++++ .
T Consensus 245 ~Wnvd~~r~~~TL-sGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~ 320 (459)
T KOG0288|consen 245 LWNVDSLRLRHTL-SGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHF 320 (459)
T ss_pred eeeccchhhhhhh-cccccceeeehhhcccc-ceeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeeccc
Confidence 9999876554444 45999999998874433 3899999999999999999998888877778887776 2333333 5
Q ss_pred CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCC----CcCEEEEEEcCCC
Q 018784 207 GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGH----HGPVHCVRFSPGG 282 (350)
Q Consensus 207 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h----~~~v~~l~~sp~~ 282 (350)
|+.||+||.+.........+.....++.+.. ++..+++++.|.++.++|+++.+...++... ..-.+.+.|||++
T Consensus 321 DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 321 DKKVRFWDIRSADKTRSVPLGGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred ccceEEEeccCCceeeEeecCcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC
Confidence 8899999999999888888877777777766 4677888899999999999998876665432 1237889999999
Q ss_pred CEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccch
Q 018784 283 ESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGK 340 (350)
Q Consensus 283 ~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~ 340 (350)
.|+|+||.||.|+||++...+.+...... .....|..+.|.|-|+
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s-------------~s~~aI~s~~W~~sG~ 444 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLS-------------TSNAAITSLSWNPSGS 444 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccC-------------CCCcceEEEEEcCCCc
Confidence 99999999999999999876655433221 1112577777777664
No 90
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.6e-26 Score=198.82 Aligned_cols=240 Identities=18% Similarity=0.265 Sum_probs=197.8
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~ 91 (350)
+.||...|..+.|++ +...++++|.|..|+||..-..........|.++|+.+..+|.|.||+++|.||+.-+-|..
T Consensus 257 ~~Gh~kki~~v~~~~---~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~ 333 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHK---DLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS 333 (506)
T ss_pred ccCcceEEEEEEecc---chhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc
Confidence 479999999999997 78899999999999999988777777889999999999999999999999999999999999
Q ss_pred CCCeeeeeeccc---cEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784 92 TGDEKHSFEHKH---IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168 (350)
Q Consensus 92 ~~~~~~~~~h~~---~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg 168 (350)
++..+....+.. .+.+.+|||||.+|.+|..|+.|++||+..+.... .+..|.+.|..++|+. ++.+++++.+|+
T Consensus 334 ~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a-~Fpght~~vk~i~FsE-NGY~Lat~add~ 411 (506)
T KOG0289|consen 334 SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA-KFPGHTGPVKAISFSE-NGYWLATAADDG 411 (506)
T ss_pred CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccc-cCCCCCCceeEEEecc-CceEEEEEecCC
Confidence 999888877743 37899999999999999999999999998877444 4456999999999984 677888888999
Q ss_pred eEEEEECCCCceeEeecCC--CCeEEEEEecCCcEEEEEcCCcEEEEECC----CcceeeeeecCCCCceeEecCCCCcE
Q 018784 169 GVRLWDARSGKIVQTLETK--SPVTSAEVSRDGRYITTADGSSVKFWDAN----HFGLVKGYNMPCNTESASLEPKLGNI 242 (350)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~~~i~vwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (350)
.|++||+|.-+...++... .++.++.|.+.|++|..+ +..++||-.. ++.++..+...........+....++
T Consensus 412 ~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~-g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~ 490 (506)
T KOG0289|consen 412 SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA-GSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQY 490 (506)
T ss_pred eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee-cceeEEEEEecccccceeeehhhhcccccceeeecccceE
Confidence 9999999998877777654 469999999999999776 4445555433 44555555444433333333345689
Q ss_pred EEEecCCCeEEEEEc
Q 018784 243 FIAGGEDMWVHVFDF 257 (350)
Q Consensus 243 l~sg~~d~~i~v~d~ 257 (350)
+++++.|..++++.+
T Consensus 491 l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 491 LASTSMDAILRLYAL 505 (506)
T ss_pred EeeccchhheEEeec
Confidence 999999999888754
No 91
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=3.9e-26 Score=187.64 Aligned_cols=284 Identities=20% Similarity=0.329 Sum_probs=221.2
Q ss_pred eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc-------eee--------eccCccCCeEEEEECC-CCcEE
Q 018784 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-------WIG--------TFEGHKGAVWSCCLDA-NALFS 76 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~-------~~~--------~l~gH~~~V~~v~~~~-~~~~l 76 (350)
+-|.+.|..+...+ ..|+|+++|+.||.+.+||++.-. ..+ .-.+|+-.|..+-|-| |.-++
T Consensus 40 r~HgGsvNsL~id~--tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDL--TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred ccCCCccceeeecc--ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 67999999998887 478999999999999999986432 111 1246888898888866 55678
Q ss_pred EEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCC---CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEE
Q 018784 77 ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDT---HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAW 153 (350)
Q Consensus 77 ~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~---~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~ 153 (350)
.|+|.|.++||||..+.+....+.-++.|++-+++|-. .++|+|..|-.|++.|+.++.... .+.+|.+.|.++.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH-~LsGHr~~vlaV~W 196 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH-TLSGHRDGVLAVEW 196 (397)
T ss_pred ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee-eeccccCceEEEEe
Confidence 89999999999999999988888888999999999843 477888889999999998876543 45678889999999
Q ss_pred eCCCCcEEEEEeCCCeEEEEECCCC-ceeEeecC---------------CCCeEEEEEecCCcEEE-EEcCCcEEEEECC
Q 018784 154 LHSDQTILSSCTDSGGVRLWDARSG-KIVQTLET---------------KSPVTSAEVSRDGRYIT-TADGSSVKFWDAN 216 (350)
Q Consensus 154 ~~~~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~~---------------~~~v~~~~~~~~~~~l~-~~~~~~i~vwd~~ 216 (350)
+|....++++|+.||.|++||+|.. .++..+.. .+.++.++|+.++.++. .+.+..+++|+..
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecc
Confidence 9999999999999999999999865 44444432 24588899999998775 5678899999987
Q ss_pred Cccee-eeeecCCC--CceeE--ecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCC
Q 018784 217 HFGLV-KGYNMPCN--TESAS--LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSED 291 (350)
Q Consensus 217 ~~~~~-~~~~~~~~--~~~~~--~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~D 291 (350)
++..- +.+.-.++ ..... ...-+...++---.++.+.++++.+|..++.+.+|...|.|..|.|+-+...+|..|
T Consensus 277 ~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d 356 (397)
T KOG4283|consen 277 SGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMN 356 (397)
T ss_pred cCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccC
Confidence 65422 11110010 11111 111112333333446889999999999999999998899999999999999999999
Q ss_pred CcEEEecC
Q 018784 292 GTIRIWQT 299 (350)
Q Consensus 292 g~v~vw~~ 299 (350)
+.|..|-.
T Consensus 357 ~ni~~w~p 364 (397)
T KOG4283|consen 357 GNIYMWSP 364 (397)
T ss_pred Cccccccc
Confidence 99999964
No 92
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1.7e-26 Score=202.44 Aligned_cols=283 Identities=19% Similarity=0.240 Sum_probs=210.1
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC----Cceeeecc-CccCCeEEEEECCCCcEEEEeeCCCeEE
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET----GDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAK 86 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~----~~~~~~l~-gH~~~V~~v~~~~~~~~l~s~s~Dg~v~ 86 (350)
+++|+..|+++++.| .|-.++|||-|-+|++||... -+..+.|. .-...|+++.+++.+..++..+..-..+
T Consensus 163 l~hgtk~Vsal~~Dp---~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDP---SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred ccCCceEEEEeeecC---CCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 479999999999987 899999999999999999652 12222222 2334688999999998887777788899
Q ss_pred EeeCCCCCeee-------------eeeccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCCCCCCeee-----cCCCCc
Q 018784 87 LWDALTGDEKH-------------SFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREV-----GNSSGS 147 (350)
Q Consensus 87 vWd~~~~~~~~-------------~~~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~~~~~~-----~~~~~~ 147 (350)
|+|-....... +-.|...++|-+|+|. .+.++|++.|+++|+||+.........+ +...-.
T Consensus 240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~ 319 (641)
T KOG0772|consen 240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP 319 (641)
T ss_pred EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence 99854322111 1247788999999995 4678999999999999998654333222 233446
Q ss_pred EEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc--eeEee-cC---CCCeEEEEEecCCcEEEE-EcCCcEEEEECCCcce
Q 018784 148 IRTVAWLHSDQTILSSCTDSGGVRLWDARSGK--IVQTL-ET---KSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGL 220 (350)
Q Consensus 148 v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~--~~~~~-~~---~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~ 220 (350)
+++|+|+++ +.++++|-.||.|.+||.++.. +...+ +. ...|+++.|+++|++|++ +.|+++++||+++.+.
T Consensus 320 ~tsC~~nrd-g~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 320 VTSCAWNRD-GKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred ceeeecCCC-cchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 788999865 4557777788999999986432 22222 12 247999999999998876 5688999999998753
Q ss_pred -eeeeec-C--CCCceeEecCCCCcEEEEecC------CCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecC
Q 018784 221 -VKGYNM-P--CNTESASLEPKLGNIFIAGGE------DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSE 290 (350)
Q Consensus 221 -~~~~~~-~--~~~~~~~~~~~~~~~l~sg~~------d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~ 290 (350)
+..... + -....+.|+| +.+++++|+. .+++.+||..+.+.+..+..-...|..+.|+|.-+.+..|+.
T Consensus 399 pL~~~tgL~t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsg 477 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSG 477 (641)
T ss_pred chhhhcCCCccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecC
Confidence 322221 1 1234566666 4688888774 568999999999998888777888999999999888889999
Q ss_pred CCcEEEecC
Q 018784 291 DGTIRIWQT 299 (350)
Q Consensus 291 Dg~v~vw~~ 299 (350)
||.++++--
T Consensus 478 dG~~~vyYd 486 (641)
T KOG0772|consen 478 DGTAHVYYD 486 (641)
T ss_pred CCceEEEEC
Confidence 999999853
No 93
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=3e-26 Score=189.48 Aligned_cols=244 Identities=21% Similarity=0.347 Sum_probs=192.7
Q ss_pred cCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee
Q 018784 61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE 140 (350)
Q Consensus 61 ~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~ 140 (350)
+..|..+.|++.+..|+.+++||+++++|......+..+.|..++.+|+|.++ ..+++|+-|+.|+.+|+..+. ...
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~--~~~ 89 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN--EDQ 89 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc--cee
Confidence 57799999999888888888999999999998888888899999999999984 468899999999999998543 456
Q ss_pred ecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcce
Q 018784 141 VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGL 220 (350)
Q Consensus 141 ~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~ 220 (350)
++.|...++++.+++ ....+++|++|++|++||.|.......+.....|.++.... .+++++..+..+.+||+|+...
T Consensus 90 igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g-~~LvVg~~~r~v~iyDLRn~~~ 167 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSG-NRLVVGTSDRKVLIYDLRNLDE 167 (323)
T ss_pred eccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEeccC-CEEEEeecCceEEEEEcccccc
Confidence 788999999999885 44567889999999999999866666666666777666554 3566667889999999998765
Q ss_pred ee---eeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccC----eeEEeecCCCc---------CEEEEEEcCCCCE
Q 018784 221 VK---GYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG----EQIGCNKGHHG---------PVHCVRFSPGGES 284 (350)
Q Consensus 221 ~~---~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~----~~~~~~~~h~~---------~v~~l~~sp~~~~ 284 (350)
.. .-.+.-.+.++.+.| .+.=+++++-||+|.+=.++.. ..-..++.|.. +|++|+|+|--..
T Consensus 168 ~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t 246 (323)
T KOG1036|consen 168 PFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT 246 (323)
T ss_pred hhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence 43 112222345566666 5677889999999888666554 22344556642 7999999999889
Q ss_pred EEEecCCCcEEEecCCCCCcccCCCC
Q 018784 285 YASGSEDGTIRIWQTNPPNHEENHSG 310 (350)
Q Consensus 285 lasgs~Dg~v~vw~~~~~~~~~~~~~ 310 (350)
||||+.||.|.+||..+.+.+.....
T Consensus 247 faTgGsDG~V~~Wd~~~rKrl~q~~~ 272 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKRLKQLAK 272 (323)
T ss_pred EEecCCCceEEEccCcchhhhhhccC
Confidence 99999999999999987776655544
No 94
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.7e-25 Score=184.57 Aligned_cols=252 Identities=20% Similarity=0.315 Sum_probs=201.4
Q ss_pred ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeecc-ccEeEEEEcCCCCeEEEeeC--CCeEEE
Q 018784 52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHK-HIVRACAFSEDTHLLLTGGF--EKILRI 128 (350)
Q Consensus 52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~sg~~--d~~v~v 128 (350)
++.+.|..-...|.++.|+++|.++++++.|-+++++|..+++.+.++..+ -.|..+.|....+.++.++. |.+||.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 344455556678999999999999999999999999999999999888754 45777888776666666665 899999
Q ss_pred EECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCC
Q 018784 129 FDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGS 208 (350)
Q Consensus 129 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~ 208 (350)
-++.+.. ..+...+|...|.++..+|-+ ..++|++.|++|++||+|..++...+..... ..++++|+|.+++.+.++
T Consensus 85 Lsl~dNk-ylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 85 LSLHDNK-YLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEeecCc-eEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCC
Confidence 9997644 356678899999999988766 5677889999999999998887766654332 247899999999988765
Q ss_pred -cEEEEECCCc--ceeeeeecCC----CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCE---EEEEE
Q 018784 209 -SVKFWDANHF--GLVKGYNMPC----NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPV---HCVRF 278 (350)
Q Consensus 209 -~i~vwd~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v---~~l~~ 278 (350)
.|++||+|.+ ++..++.... ....+.|.+ +|++++.++..+.+++.|.-+|....++.++...- .+.+|
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f 240 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF 240 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence 8999999986 3555555442 123344554 69999999999999999999999988888776543 67899
Q ss_pred cCCCCEEEEecCCCcEEEecCCCCCcccC
Q 018784 279 SPGGESYASGSEDGTIRIWQTNPPNHEEN 307 (350)
Q Consensus 279 sp~~~~lasgs~Dg~v~vw~~~~~~~~~~ 307 (350)
+||++++++|+.||+|.+|++..+.....
T Consensus 241 tPds~Fvl~gs~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWNLETGKKVAV 269 (311)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence 99999999999999999999976655433
No 95
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=9.3e-27 Score=201.43 Aligned_cols=257 Identities=23% Similarity=0.326 Sum_probs=197.6
Q ss_pred ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC----------ceeeeccCccCCeEEEEECCC-CcEEEEeeCC
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----------DWIGTFEGHKGAVWSCCLDAN-ALFSASGSAD 82 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~----------~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~D 82 (350)
.|.+.|..+.+.|..|. ++|+++..+.+.|||..+. .+-..|.||++.-+.++|++. .-.|++++.|
T Consensus 122 ~h~gEVnRaRymPQnp~--iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPN--IVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhCCCCCc--EEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 59999999999997665 9999999999999996432 122378999998888999875 4478999999
Q ss_pred CeEEEeeCCCCCe-------eeee-eccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCC-CCCCCeeecCCCCcEEEEE
Q 018784 83 FTAKLWDALTGDE-------KHSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNR-PDAPPREVGNSSGSIRTVA 152 (350)
Q Consensus 83 g~v~vWd~~~~~~-------~~~~-~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~-~~~~~~~~~~~~~~v~~~~ 152 (350)
++|.+||+..... +..+ .|...|..++|++ +..+|++++.|+.+.|||+++ ...+......|.+.+.+++
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence 9999999854322 2222 5899999999999 456788999999999999986 3444556678899999999
Q ss_pred EeCCCCcEEEEEeCCCeEEEEECCCC-ceeEeecC-CCCeEEEEEecCCc-EEE-EEcCCcEEEEECCCcceeeeeecCC
Q 018784 153 WLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLET-KSPVTSAEVSRDGR-YIT-TADGSSVKFWDANHFGLVKGYNMPC 228 (350)
Q Consensus 153 ~~~~~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~~~~~~-~l~-~~~~~~i~vwd~~~~~~~~~~~~~~ 228 (350)
|.|-+..++++|+.|++|.+||+|+- +++..+.. ...|..+.|+|... .|+ ++.|+.+.+||+..-...+.-.
T Consensus 280 fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e--- 356 (422)
T KOG0264|consen 280 FNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE--- 356 (422)
T ss_pred eCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh---
Confidence 99999999999999999999999975 45566654 56799999999754 333 3457788888875433221100
Q ss_pred CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCE-EEEecCCCcEEEecCC
Q 018784 229 NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES-YASGSEDGTIRIWQTN 300 (350)
Q Consensus 229 ~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~-lasgs~Dg~v~vw~~~ 300 (350)
+ ..| ...++++.-.||...|..+.|+|+.+. ++|.+.|+.+.||+..
T Consensus 357 ----------d-------a~d--------gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 357 ----------D-------AED--------GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ----------h-------hcc--------CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 0 000 012344556689999999999999876 6899999999999864
No 96
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=3.3e-27 Score=196.39 Aligned_cols=245 Identities=20% Similarity=0.305 Sum_probs=204.8
Q ss_pred ccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee---------eccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784 60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF---------EHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130 (350)
Q Consensus 60 H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~---------~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd 130 (350)
...-+.|..|+||+++|+|||.||-|.+||..+|+.+.-+ -+...|.|+.|+.|..+|++|+.||.|++|.
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWr 291 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWR 291 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEE
Confidence 3455778899999999999999999999999888755433 2677899999999999999999999999999
Q ss_pred CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEE-EEcCC
Q 018784 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYIT-TADGS 208 (350)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~~ 208 (350)
+.++.+..+....|...|+++.|+. ++..+++++.|.++++.-+++|+++..+.++ +.++...|.++|..+. +++|+
T Consensus 292 i~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDg 370 (508)
T KOG0275|consen 292 IETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDG 370 (508)
T ss_pred EecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCc
Confidence 9999888877778899999999985 4556778899999999999999999999876 5688899999997765 56799
Q ss_pred cEEEEECCCcceeeeeecCCC---CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec-C--CCcCEEEEEEcCCC
Q 018784 209 SVKFWDANHFGLVKGYNMPCN---TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK-G--HHGPVHCVRFSPGG 282 (350)
Q Consensus 209 ~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~-~--h~~~v~~l~~sp~~ 282 (350)
+|++|+..+..+..++..... ...+.+.|++...++++...++|++-++. |+.++.+. | ..+..-+.+.||.|
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkG 449 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKG 449 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCC
Confidence 999999999998888765443 23556677888999999999999999875 56666553 2 23456778899999
Q ss_pred CEEEEecCCCcEEEecCCCCCccc
Q 018784 283 ESYASGSEDGTIRIWQTNPPNHEE 306 (350)
Q Consensus 283 ~~lasgs~Dg~v~vw~~~~~~~~~ 306 (350)
.++.+.++|+.++.+.+..+..+-
T Consensus 450 ewiYcigED~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 450 EWIYCIGEDGVLYCFSVLSGKLER 473 (508)
T ss_pred cEEEEEccCcEEEEEEeecCceee
Confidence 999999999999999987666553
No 97
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=9.2e-28 Score=202.16 Aligned_cols=245 Identities=22% Similarity=0.401 Sum_probs=202.4
Q ss_pred ceeeeccCccCCeEEEEECCCC-cEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEE
Q 018784 52 DWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIF 129 (350)
Q Consensus 52 ~~~~~l~gH~~~V~~v~~~~~~-~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vw 129 (350)
.++..|.||.+.|.+++-+|.. ..+|||+.||.|++||+.+..+..++ .|.+.|+.+++.. ..++++|+|.+|+.|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQW 134 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeee
Confidence 4567889999999999999877 68899999999999999998888877 5899999999987 668899999999999
Q ss_pred ECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcE-EE-EEc
Q 018784 130 DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRY-IT-TAD 206 (350)
Q Consensus 130 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~-l~-~~~ 206 (350)
.++.+ +.... .....+..+... .....+++||+ .|.|||.+...++..+.- ...+.++.|+|.... |+ +++
T Consensus 135 k~~~~--p~~ti-lg~s~~~gIdh~-~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~s 208 (433)
T KOG0268|consen 135 KIDGP--PLHTI-LGKSVYLGIDHH-RKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCAS 208 (433)
T ss_pred eccCC--cceee-eccccccccccc-cccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeecc
Confidence 88753 22221 123344455432 34567888886 599999988888888774 356889999997653 44 347
Q ss_pred CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccC-eeEEeecCCCcCEEEEEEcCCCCEE
Q 018784 207 GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG-EQIGCNKGHHGPVHCVRFSPGGESY 285 (350)
Q Consensus 207 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l 285 (350)
|+.|.+||+|+..+++...+...+..++++| ..-.|++|++|..++.||++.. +++....+|.+.|.++.|||.|+-+
T Consensus 209 DrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef 287 (433)
T KOG0268|consen 209 DRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF 287 (433)
T ss_pred CCceEEEecccCCccceeeeeccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence 9999999999999999888888888999999 7889999999999999999875 4567788999999999999999999
Q ss_pred EEecCCCcEEEecCCCCCcc
Q 018784 286 ASGSEDGTIRIWQTNPPNHE 305 (350)
Q Consensus 286 asgs~Dg~v~vw~~~~~~~~ 305 (350)
+|||.|.+|+||.++.....
T Consensus 288 vsgsyDksIRIf~~~~~~SR 307 (433)
T KOG0268|consen 288 VSGSYDKSIRIFPVNHGHSR 307 (433)
T ss_pred ccccccceEEEeecCCCcch
Confidence 99999999999988654433
No 98
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.6e-26 Score=207.68 Aligned_cols=232 Identities=16% Similarity=0.294 Sum_probs=193.4
Q ss_pred CCCcEEEEeeCCCeEEEeeCCCCCe------eeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCC-CCCeeec
Q 018784 71 ANALFSASGSADFTAKLWDALTGDE------KHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD-APPREVG 142 (350)
Q Consensus 71 ~~~~~l~s~s~Dg~v~vWd~~~~~~------~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~ 142 (350)
+.+++|+|||.||.|++|+...-.. ...+ .|...|+.+.+..+++.|+++|.|-+|++|+..... .-...+.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 5677899999999999999754322 2223 488899999999999999999999999999987653 2235567
Q ss_pred CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC--ceeEeec----------CCCCeEEEEEecCCcEEEEE-cCCc
Q 018784 143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG--KIVQTLE----------TKSPVTSAEVSRDGRYITTA-DGSS 209 (350)
Q Consensus 143 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~--~~~~~~~----------~~~~v~~~~~~~~~~~l~~~-~~~~ 209 (350)
.|...|.++++...+..+++||+-|+.|++||+.++ +.+..+. ...++.+++.++.|.+++++ ..+.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 899999999987778889999999999999999987 3333322 23578999999999877765 4788
Q ss_pred EEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEec
Q 018784 210 VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS 289 (350)
Q Consensus 210 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs 289 (350)
+++||.++.+.+-.+..+.....+.+..++|..++++++|++|++||+...+++.++..|...||++..+|+-..+.+|+
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~ 274 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG 274 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC
Confidence 99999999887777776655555556666899999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEecCCCC
Q 018784 290 EDGTIRIWQTNPP 302 (350)
Q Consensus 290 ~Dg~v~vw~~~~~ 302 (350)
.||.|+.=|++.+
T Consensus 275 rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 275 RDGNIYRTDLRNP 287 (735)
T ss_pred CCCcEEecccCCc
Confidence 9999999888764
No 99
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=7.9e-26 Score=182.90 Aligned_cols=246 Identities=22% Similarity=0.293 Sum_probs=199.1
Q ss_pred eeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee---eeccccEeEEEEcC-CCCeEEEeeCCCeEEEEE
Q 018784 55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS---FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFD 130 (350)
Q Consensus 55 ~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~---~~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd 130 (350)
+.+.+|.+.|.+|+|..+|..|++|+.|+++++|+++..+.... ..|...|-.++|+| +...|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 56789999999999999999999999999999999876643332 25888888888876 667899999999999999
Q ss_pred CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcC-Cc
Q 018784 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG-SS 209 (350)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-~~ 209 (350)
....+..... . ..+.-.-+.|+|+++.++ .+..|..|.+.|.++.+.+...+....++.++|+.++.++...++ |.
T Consensus 94 ~r~~k~~~~i-~-~~~eni~i~wsp~g~~~~-~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRSGKCTARI-E-TKGENINITWSPDGEYIA-VGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred eccCcEEEEe-e-ccCcceEEEEcCCCCEEE-EecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 9866543322 2 233344677887766555 456777999999999999998888888999999977776655554 89
Q ss_pred EEEEECCCcceeeeeecCC-CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEe
Q 018784 210 VKFWDANHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASG 288 (350)
Q Consensus 210 i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasg 288 (350)
|.|..-...+++.++.-+. +..++.+.| .|++|++|+.|..+-+||+.+.-+++++.-+.-+|..++||-+|++||||
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 9998877777777766544 344555665 69999999999999999999988889999999999999999999999999
Q ss_pred cCCCcEEEecCCCCCc
Q 018784 289 SEDGTIRIWQTNPPNH 304 (350)
Q Consensus 289 s~Dg~v~vw~~~~~~~ 304 (350)
|+|..|-|=++.++..
T Consensus 250 SEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 250 SEDHFIDIAEVETGDR 265 (313)
T ss_pred CccceEEeEecccCCe
Confidence 9999997766655543
No 100
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=5.2e-27 Score=188.65 Aligned_cols=242 Identities=18% Similarity=0.281 Sum_probs=197.9
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~ 91 (350)
|-||++.|+....+- +....|+++.|=+.++||.-+|..+.+|+ |..-|.+++|+.|..+|+||+.+..+||+|++
T Consensus 55 feghkgavw~~~l~~---na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln 130 (334)
T KOG0278|consen 55 FEGHKGAVWSATLNK---NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLN 130 (334)
T ss_pred eeccCcceeeeecCc---hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhcc
Confidence 469999999987764 66788999999999999999999999887 88899999999999999999999999999987
Q ss_pred CCC--eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784 92 TGD--EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (350)
Q Consensus 92 ~~~--~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~ 169 (350)
..+ +...-.|++.|+.+-|....+.+++...|++||+||..++....... ....|.++..++ ++.++..+ +-+.
T Consensus 131 ~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~-dG~ilTia-~gss 206 (334)
T KOG0278|consen 131 RPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQ-DGRILTIA-YGSS 206 (334)
T ss_pred CCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeecc-CCCEEEEe-cCce
Confidence 655 23344699999999999888999999999999999998776544433 344577887765 55555554 4479
Q ss_pred EEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE-EcCCcEEEEECCCcceeeee-ecCC-CCceeEecCCCCcEEEEe
Q 018784 170 VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGY-NMPC-NTESASLEPKLGNIFIAG 246 (350)
Q Consensus 170 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~l~sg 246 (350)
|++||..+...+...+.+..|.+....|+..++++ +.+..++.||-.++..+-.+ ..+. ...++.|.| +|...++|
T Consensus 207 V~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsG 285 (334)
T KOG0278|consen 207 VKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASG 285 (334)
T ss_pred eEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeecc
Confidence 99999999999999999999999999998766655 46789999999998877665 2222 334555665 69999999
Q ss_pred cCCCeEEEEEcccCee
Q 018784 247 GEDMWVHVFDFHTGEQ 262 (350)
Q Consensus 247 ~~d~~i~v~d~~~~~~ 262 (350)
|+||+|++|....++.
T Consensus 286 SEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 286 SEDGTIRLWQTTPGKT 301 (334)
T ss_pred CCCceEEEEEecCCCc
Confidence 9999999999865543
No 101
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=7.5e-26 Score=205.29 Aligned_cols=266 Identities=17% Similarity=0.257 Sum_probs=212.9
Q ss_pred EEEEEeCCCCeeEeeCCCC---ce----------ee------------------------eccCccCCeEEEEECCCCcE
Q 018784 33 FLVSASKDSSPMLRNGETG---DW----------IG------------------------TFEGHKGAVWSCCLDANALF 75 (350)
Q Consensus 33 ~lasgs~d~~v~iw~~~~~---~~----------~~------------------------~l~gH~~~V~~v~~~~~~~~ 75 (350)
-+.|+|.|++||+|+++.+ .. ++ ..-+-.-.+++++++|++++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 3689999999999997642 11 00 00123345789999999999
Q ss_pred EEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcC---CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEE
Q 018784 76 SASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSE---DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV 151 (350)
Q Consensus 76 l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~---~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~ 151 (350)
||+|..-|++||+++...+....+ .|...|.|+.|+. ..++||+++.|+.|.|||+.....+...+-.|...|+++
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv 553 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV 553 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence 999999999999999876655544 5999999999975 357899999999999999988777777778899999999
Q ss_pred EEeCCC-CcEEEEEeCCCeEEEEECCC----CceeEe---ecCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceee
Q 018784 152 AWLHSD-QTILSSCTDSGGVRLWDARS----GKIVQT---LETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVK 222 (350)
Q Consensus 152 ~~~~~~-~~~~~s~~~dg~i~iwd~~~----~~~~~~---~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~ 222 (350)
.|.-.+ +..+++|+.|+.| +++... |..... ...+..+..+++.|+.++++++ .|+.|+|||+.+++..+
T Consensus 554 KFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k 632 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVK 632 (1080)
T ss_pred EEeecCCceEEEeccCchhh-heehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceee
Confidence 998655 4567788888655 444432 221111 1124568889999998887654 68999999999999988
Q ss_pred eeecCC----CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784 223 GYNMPC----NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 223 ~~~~~~----~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~ 298 (350)
.+.... ....+.+.| .+-|+++...|+++.++|..+|+++....||...|+.|.|.+|-+.|++.+.||+|.||.
T Consensus 633 ~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 633 SFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred eecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 887643 234556665 589999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 018784 299 TN 300 (350)
Q Consensus 299 ~~ 300 (350)
+.
T Consensus 712 lp 713 (1080)
T KOG1408|consen 712 LP 713 (1080)
T ss_pred Cc
Confidence 86
No 102
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.1e-26 Score=181.55 Aligned_cols=247 Identities=18% Similarity=0.212 Sum_probs=188.0
Q ss_pred eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC---ceeeeccCccCCeEEEEECC--CCcEEEEeeCCCeEEE
Q 018784 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---DWIGTFEGHKGAVWSCCLDA--NALFSASGSADFTAKL 87 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~---~~~~~l~gH~~~V~~v~~~~--~~~~l~s~s~Dg~v~v 87 (350)
.+|.+-|.++..+- .|+.|||+|+|++|+|+...+. +++.+|.||+++|+-++|.. -|.+|||++.||.|.|
T Consensus 8 t~H~D~IHda~lDy---ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDY---YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhHhhhhh---hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 57888888775543 6899999999999999997653 56889999999999999953 7999999999999999
Q ss_pred eeCCCCCeee---eeeccccEeEEEEcC--CCCeEEEeeCCCeEEEEECCCC-C-CCCeeecCCCCcEEEEEEeCCC--C
Q 018784 88 WDALTGDEKH---SFEHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRP-D-APPREVGNSSGSIRTVAWLHSD--Q 158 (350)
Q Consensus 88 Wd~~~~~~~~---~~~h~~~V~~~~~~~--~~~~l~sg~~d~~v~vwd~~~~-~-~~~~~~~~~~~~v~~~~~~~~~--~ 158 (350)
|.-+.++-.. ...|...|++++|.| .|-.|++++.||.|.|.+.+.. . ...+....|.-.+.++.|.|.. +
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 9987764211 125889999999988 4678999999999999987653 1 2233446677788999998751 1
Q ss_pred -----------cEEEEEeCCCeEEEEECCCCc--eeEeecCC-CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeee
Q 018784 159 -----------TILSSCTDSGGVRLWDARSGK--IVQTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY 224 (350)
Q Consensus 159 -----------~~~~s~~~dg~i~iwd~~~~~--~~~~~~~~-~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 224 (350)
+.+++|+.|+.|+||+..+++ .-.++..+ .-++.+++.|.-.+
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl----------------------- 221 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL----------------------- 221 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC-----------------------
Confidence 458899999999999987752 22234333 34666777664110
Q ss_pred ecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccC-ee--EEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784 225 NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG-EQ--IGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (350)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~-~~--~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~ 299 (350)
...+++++++|+++.||..+.. +. ...+......++.++||+.|.+|+.++.|..|.+|.-
T Consensus 222 --------------~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke 285 (299)
T KOG1332|consen 222 --------------PKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKE 285 (299)
T ss_pred --------------CceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEe
Confidence 1357899999999999976521 11 2234456778999999999999999999999999964
No 103
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=3.1e-25 Score=210.15 Aligned_cols=265 Identities=20% Similarity=0.336 Sum_probs=203.7
Q ss_pred ccCCeEEEEECCCCcEEEEee--CCCeEEEeeCCCC------------Ceeee-eeccccEeEEEEcCCCCeEEEeeCCC
Q 018784 60 HKGAVWSCCLDANALFSASGS--ADFTAKLWDALTG------------DEKHS-FEHKHIVRACAFSEDTHLLLTGGFEK 124 (350)
Q Consensus 60 H~~~V~~v~~~~~~~~l~s~s--~Dg~v~vWd~~~~------------~~~~~-~~h~~~V~~~~~~~~~~~l~sg~~d~ 124 (350)
+..+|.++.++|++..+|||| .||.++||+...- +.+.+ ..|.+.|.|+.|+|||++||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 456789999999999999999 9999999975311 11112 24899999999999999999999999
Q ss_pred eEEEEECCCC--C--------C-------CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-
Q 018784 125 ILRIFDLNRP--D--------A-------PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET- 186 (350)
Q Consensus 125 ~v~vwd~~~~--~--------~-------~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~- 186 (350)
.|.||..... . . .......|.+.|..+.|+| +..++++++-|++|.+|+.++++.+..+..
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEccccceeeeeeecc
Confidence 9999987620 0 0 1122346888999999997 778999999999999999999988888875
Q ss_pred CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCC-------CceeEecCCCCcEEEEecC----CCeEEE
Q 018784 187 KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-------TESASLEPKLGNIFIAGGE----DMWVHV 254 (350)
Q Consensus 187 ~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~sg~~----d~~i~v 254 (350)
++.|..+.|+|-|+|+++- +|++|+||.+.++...+..+.+-. ..-.++.| +|++|++.-. -..+.|
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSP-DG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSP-DGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCC-CcCeecchhhccCCcceeEE
Confidence 5678999999999999874 688999999888887776655422 12344555 5888887543 346888
Q ss_pred EEcccCeeEEeecCCCcCEEEEEEcCC-----CC------------EEEEecCCCcEEEecCCCCCcccCCCCCCCcccc
Q 018784 255 FDFHTGEQIGCNKGHHGPVHCVRFSPG-----GE------------SYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTG 317 (350)
Q Consensus 255 ~d~~~~~~~~~~~~h~~~v~~l~~sp~-----~~------------~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~ 317 (350)
.+-.+.+.-..+.||..++.+++|+|. .. .+|+||.|++|-||....++.....
T Consensus 250 ieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi--------- 320 (942)
T KOG0973|consen 250 IERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI--------- 320 (942)
T ss_pred EecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh---------
Confidence 888778877889999999999999982 11 5789999999999987655443222
Q ss_pred ccccccccceeeeeeEEEcccch
Q 018784 318 KLKASTDEVTRKIEGFHINKEGK 340 (350)
Q Consensus 318 ~~~~~~~~~~~~i~~~~~~~~g~ 340 (350)
-+-....|.++.|+|||.
T Consensus 321 -----~~lf~~SI~DmsWspdG~ 338 (942)
T KOG0973|consen 321 -----HNLFNKSIVDMSWSPDGF 338 (942)
T ss_pred -----hhhhcCceeeeeEcCCCC
Confidence 223344566666666664
No 104
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.7e-25 Score=182.34 Aligned_cols=316 Identities=16% Similarity=0.228 Sum_probs=224.0
Q ss_pred eeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee
Q 018784 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS 98 (350)
Q Consensus 19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~ 98 (350)
-.|+.|++ -|.+||+|..||.+.|||..+....++|.+|.-+|.+++|+++|++|+|+|.|-.|++||+..+.+...
T Consensus 26 a~~~~Fs~---~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSR---WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEecc---CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 45777886 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccEeEEEEcCCCCeE-EEeeCCCeEEEEECCCCCCC--CeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784 99 FEHKHIVRACAFSEDTHLL-LTGGFEKILRIFDLNRPDAP--PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (350)
Q Consensus 99 ~~h~~~V~~~~~~~~~~~l-~sg~~d~~v~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~ 175 (350)
+....+|..+.|+|..... ++.-.+..-.+-++..+... ........+.+-+..++...+.++.+|..-|.+.++|.
T Consensus 103 irf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 103 IRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred EEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 9999999999999954333 33333333344444332111 00001111112222244566788889999999999999
Q ss_pred CCCceeEeecCC--CCeEEEEEecCCcEEEE-EcCCcEEEEECCCccee---------eeee-c--CCCCceeEecCCCC
Q 018784 176 RSGKIVQTLETK--SPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLV---------KGYN-M--PCNTESASLEPKLG 240 (350)
Q Consensus 176 ~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~---------~~~~-~--~~~~~~~~~~~~~~ 240 (350)
.+.+++..+... ..|.++.++..|++++. ..|+.||.|+++..-.. +.+. + ...-..+.|+. +|
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~-dg 261 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSG-DG 261 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecC-Cc
Confidence 999998877643 57889999999988765 46899999997632111 1110 0 01112344544 68
Q ss_pred cEEEEecC-CCeEEEEEcccCeeEEeecCCC-cCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccc
Q 018784 241 NIFIAGGE-DMWVHVFDFHTGEQIGCNKGHH-GPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGK 318 (350)
Q Consensus 241 ~~l~sg~~-d~~i~v~d~~~~~~~~~~~~h~-~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 318 (350)
.|+++|+. -..+++|.-..|.++..+.|.. .....+.|+|-...+++- ..|.|++|.....+.-....+ + .-.
T Consensus 262 eYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~enwsafAP--d--Fqe 336 (405)
T KOG1273|consen 262 EYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVENWSAFAP--D--FQE 336 (405)
T ss_pred cEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccchhhcCc--h--HHH
Confidence 88887774 4579999999999999998887 567889999999999887 678999998754433222211 1 111
Q ss_pred cccccccceeeeeeEEEcccchhHhh
Q 018784 319 LKASTDEVTRKIEGFHINKEGKAEEK 344 (350)
Q Consensus 319 ~~~~~~~~~~~i~~~~~~~~g~~~~~ 344 (350)
+.. ..+...+..+|.+..|.++++.
T Consensus 337 lee-NieY~EkEdeFDi~DE~~~e~~ 361 (405)
T KOG1273|consen 337 LEE-NIEYEEKEDEFDIEDEDEQEQE 361 (405)
T ss_pred HHh-hhhhccccccCCcccccccchh
Confidence 111 2234455567777655555443
No 105
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.8e-26 Score=208.89 Aligned_cols=235 Identities=20% Similarity=0.281 Sum_probs=184.4
Q ss_pred EEEecccCCCccEEEEEeCCCCeeEeeCCC---CceeeeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCCCee
Q 018784 21 DLFYSPITPDGFFLVSASKDSSPMLRNGET---GDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTGDEK 96 (350)
Q Consensus 21 ~~~~~~~s~dg~~lasgs~d~~v~iw~~~~---~~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~~ 96 (350)
.|.++ +-+..+|||++..|.|.+||+.. .+.+..|..|+..|.+++|++ ...+|+|||.||+||+||+...+..
T Consensus 92 DVkW~--~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~ 169 (839)
T KOG0269|consen 92 DVKWG--QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSK 169 (839)
T ss_pred hcccc--cchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccc
Confidence 44555 34677999999999999999977 667778999999999999976 5789999999999999999877765
Q ss_pred eee-eccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 018784 97 HSF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174 (350)
Q Consensus 97 ~~~-~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd 174 (350)
.++ ...+.|+.+.|+| .+..++++...|.+++||++.+......+..|.+.|.++.|.| ++.++++|+.|++|+|||
T Consensus 170 ~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 170 STFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWD 248 (839)
T ss_pred ccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEe
Confidence 554 4667899999998 6788999999999999999988877777889999999999987 788999999999999999
Q ss_pred CCCC--ceeEeecCCCCeEEEEEecCCcE-EEEE---cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC
Q 018784 175 ARSG--KIVQTLETKSPVTSAEVSRDGRY-ITTA---DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248 (350)
Q Consensus 175 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~-l~~~---~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 248 (350)
+.++ +++.+++.-.++..+.|-|.-.+ |+++ .+..|+|||++..
T Consensus 249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP------------------------------ 298 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP------------------------------ 298 (839)
T ss_pred ccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc------------------------------
Confidence 9865 46778888889999999987543 3322 2445666665421
Q ss_pred CCeEEEEEcccCeeEEeecCCCcCEEEEEEcC-CCCEEEEecCCCcEEEecC
Q 018784 249 DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSP-GGESYASGSEDGTIRIWQT 299 (350)
Q Consensus 249 d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp-~~~~lasgs~Dg~v~vw~~ 299 (350)
--+..++..|...++.++|-. |...|.++|.|++|..-..
T Consensus 299 -----------YIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 299 -----------YIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred -----------cccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 122334556777777777753 3445677777777765543
No 106
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=6.1e-25 Score=198.88 Aligned_cols=240 Identities=23% Similarity=0.341 Sum_probs=189.7
Q ss_pred ccccce-eEeeccCCceeE-EEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeC
Q 018784 4 RKVAVP-LVCHGHSRPVVD-LFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA 81 (350)
Q Consensus 4 ~~~~~~-~~~~gH~~~v~~-~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~ 81 (350)
.+..++ ..+.+|.+-|.. ++|-+ .++-.+++|+.|.++.+|......++.+|.||+..|.++....++. ++|||.
T Consensus 44 ~~~~l~~~~~~~~~g~i~~~i~y~e--~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSW 120 (745)
T KOG0301|consen 44 GKQYLETHAFEGPKGFIANSICYAE--SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSW 120 (745)
T ss_pred CcccccceecccCcceeeccceecc--ccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEeccc
Confidence 344455 456788888887 88876 4666789999999999999999999999999999999998887777 899999
Q ss_pred CCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEE
Q 018784 82 DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL 161 (350)
Q Consensus 82 Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 161 (350)
|.++++|-....... ...|+..|+++++-|.+ .++|||.|.+||+|.-. ...+.+..|...|+.++..+.. -+
T Consensus 121 D~TakvW~~~~l~~~-l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---~~l~tf~gHtD~VRgL~vl~~~--~f 193 (745)
T KOG0301|consen 121 DSTAKVWRIGELVYS-LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---TLLKTFSGHTDCVRGLAVLDDS--HF 193 (745)
T ss_pred ccceEEecchhhhcc-cCCcchheeeeeecCCC-cEEeccCcceeeeccCC---chhhhhccchhheeeeEEecCC--Ce
Confidence 999999986433221 33699999999999988 78899999999999753 3445567799999999998643 37
Q ss_pred EEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEE-ecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCc-eeEecCC
Q 018784 162 SSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEV-SRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPK 238 (350)
Q Consensus 162 ~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~-~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~ 238 (350)
+||+.||.|++|++ +|+++..+.. .+-+.++.. .+++.++.++.|+++++|+.. .+.+.+..|.... ++.+-+
T Consensus 194 lScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~- 269 (745)
T KOG0301|consen 194 LSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL- 269 (745)
T ss_pred EeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-
Confidence 89999999999999 6777666664 466888884 456667778899999999976 6777777776432 333222
Q ss_pred CCcEEEEecCCCeEEEEEcc
Q 018784 239 LGNIFIAGGEDMWVHVFDFH 258 (350)
Q Consensus 239 ~~~~l~sg~~d~~i~v~d~~ 258 (350)
..-+++|++||.||||...
T Consensus 270 -NgDIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 270 -NGDIVVGGSDGRVRVFTVD 288 (745)
T ss_pred -CCCEEEeccCceEEEEEec
Confidence 3447889999999999865
No 107
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7e-25 Score=182.08 Aligned_cols=249 Identities=20% Similarity=0.382 Sum_probs=194.3
Q ss_pred ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784 52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130 (350)
Q Consensus 52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd 130 (350)
++++.|.||.+.|+-++....-..+.|+|.|.+.+||.++++.++..+ .|.+.|++++|++++.++++++.|++..||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 456789999999999998776678999999999999999999998877 6999999999999999999999999999997
Q ss_pred ------CCCCCC---------------------------------CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784 131 ------LNRPDA---------------------------------PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (350)
Q Consensus 131 ------~~~~~~---------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~ 171 (350)
+.++.. +...+..|.+.|.++.|.. ++..+++++.|++-.
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA-GGQQMVTASWDRTAN 297 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc-Ccceeeeeeccccce
Confidence 221100 1112234566777777874 455678899999999
Q ss_pred EEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCc-ceeeeeecCCCCceeEecCCCCcEEEEecC
Q 018784 172 LWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGGE 248 (350)
Q Consensus 172 iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 248 (350)
+||+++++++..+.++ ...+.++-+|..++++++ .|.+.|+||.+.. ..+..|..+........+. .+..+++|+.
T Consensus 298 lwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~-~dd~vVSgSD 376 (481)
T KOG0300|consen 298 LWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN-TDDRVVSGSD 376 (481)
T ss_pred eeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe-cCCceeecCC
Confidence 9999999999998864 678888888988887765 5789999999842 2233444444333333332 3577999999
Q ss_pred CCeEEEEEcccCe-eEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCC
Q 018784 249 DMWVHVFDFHTGE-QIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN 303 (350)
Q Consensus 249 d~~i~v~d~~~~~-~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~ 303 (350)
|.+|++||+++-+ ++.++. -..+++.++.+..++.+|.-=....|++||++...
T Consensus 377 DrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~R 431 (481)
T KOG0300|consen 377 DRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNR 431 (481)
T ss_pred CceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCc
Confidence 9999999998754 455554 34578999999888888888888899999986444
No 108
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=6e-25 Score=190.42 Aligned_cols=242 Identities=21% Similarity=0.300 Sum_probs=190.8
Q ss_pred ceeEee--ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeE
Q 018784 8 VPLVCH--GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85 (350)
Q Consensus 8 ~~~~~~--gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v 85 (350)
+|+..+ +|-..+.+++.+| ||+|||+|+.|..+.||+..+.+.++.+.+|.+.|.+++|-.....+.++|.|++|
T Consensus 192 ~~~k~~r~~h~keil~~avS~---Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsv 268 (479)
T KOG0299|consen 192 NPLKESRKGHVKEILTLAVSS---DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSV 268 (479)
T ss_pred CCCCcccccccceeEEEEEcC---CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCce
Confidence 344443 8999999998886 99999999999999999999999999999999999999998888888999999999
Q ss_pred EEeeCCCCCeeee-eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE
Q 018784 86 KLWDALTGDEKHS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (350)
Q Consensus 86 ~vWd~~~~~~~~~-~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~ 164 (350)
++|++.....+.+ +.|...|.++.-..-...+.+|+.|+++++|++.... ....-++.+.+-+++|...+ .+++|
T Consensus 269 kvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~In~~--HfvsG 344 (479)
T KOG0299|consen 269 KVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFINDE--HFVSG 344 (479)
T ss_pred EEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEEeccc--ceeec
Confidence 9999876655444 5799999999888777777778899999999995332 23334567789999998543 48899
Q ss_pred eCCCeEEEEECCCCceeEeecC-------------CCCeEEEEEecCCcEEEEEc-CCcEEEEECCCc----ceeeeeec
Q 018784 165 TDSGGVRLWDARSGKIVQTLET-------------KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHF----GLVKGYNM 226 (350)
Q Consensus 165 ~~dg~i~iwd~~~~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~----~~~~~~~~ 226 (350)
+++|.|.+|++-..+++.+... +.-|++++..|...++++++ +|.||+|-+..+ .++..+.+
T Consensus 345 SdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~ 424 (479)
T KOG0299|consen 345 SDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL 424 (479)
T ss_pred cCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc
Confidence 9999999999998887766542 12578999999999988775 789999987654 34445555
Q ss_pred CCCCceeEecCCCCcEEEEecCCCeEEEEE
Q 018784 227 PCNTESASLEPKLGNIFIAGGEDMWVHVFD 256 (350)
Q Consensus 227 ~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d 256 (350)
......+.|.+....+++..+....+--|-
T Consensus 425 ~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 425 VGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred ccEEEEEEEccCCCEEEEecccccccceee
Confidence 555556666665444666666666655553
No 109
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=4.5e-25 Score=182.65 Aligned_cols=252 Identities=17% Similarity=0.225 Sum_probs=191.2
Q ss_pred Ccccccc-eeE--eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccC--ccCCeEEEEECCCCcEE
Q 018784 2 DKRKVAV-PLV--CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG--HKGAVWSCCLDANALFS 76 (350)
Q Consensus 2 ~~~~~~~-~~~--~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~g--H~~~V~~v~~~~~~~~l 76 (350)
++++.+. |.+ +--|.++|.++.|+| ...+|++||.|++++++|..+....+.++- -...|+++.|+|.|.++
T Consensus 155 ~~~~qa~hPvIRTlYDH~devn~l~FHP---re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefl 231 (430)
T KOG0640|consen 155 SGDTQARHPVIRTLYDHVDEVNDLDFHP---RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFL 231 (430)
T ss_pred cCCcccCCceEeehhhccCcccceeecc---hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceE
Confidence 4555666 544 237999999999998 667999999999999999876655444443 34679999999999999
Q ss_pred EEeeCCCeEEEeeCCCCCeeeee----eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCC-CcEEEE
Q 018784 77 ASGSADFTAKLWDALTGDEKHSF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSS-GSIRTV 151 (350)
Q Consensus 77 ~s~s~Dg~v~vWd~~~~~~~~~~----~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~-~~v~~~ 151 (350)
+.|-...++|++|+++-++.... .|++.|+++.+++.+++-++|+.||.|++||--+..+.......|. ..|++.
T Consensus 232 lvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa 311 (430)
T KOG0640|consen 232 LVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSA 311 (430)
T ss_pred EEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeE
Confidence 99999999999999998876654 4889999999999999999999999999999766555544444444 456666
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCC------CeEEEEEecCCcEEEEEcC--CcEEEEECCCcceeee
Q 018784 152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS------PVTSAEVSRDGRYITTADG--SSVKFWDANHFGLVKG 223 (350)
Q Consensus 152 ~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~~--~~i~vwd~~~~~~~~~ 223 (350)
.|. .+++++++.+.|.++++|.+.+++++....+.+ --+...|+....++..-+. +.+.-||.|+...+..
T Consensus 312 ~Ft-kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l 390 (430)
T KOG0640|consen 312 VFT-KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL 390 (430)
T ss_pred EEc-cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence 666 466777788899999999999999988876431 1233446666666655443 5688899998765554
Q ss_pred eecCCC-CceeEecCCCCcEEEEecCCCeEEEEEc
Q 018784 224 YNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDF 257 (350)
Q Consensus 224 ~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~ 257 (350)
..+..+ ........+.+.-|++|+.|..+++|--
T Consensus 391 ~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 391 LSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred cccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 444322 3334445556788999999999999953
No 110
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.3e-23 Score=173.73 Aligned_cols=266 Identities=18% Similarity=0.312 Sum_probs=183.2
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC----CCceeeeccCccCCeEEEEEC-C-CCcEEEEeeCCCeE
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE----TGDWIGTFEGHKGAVWSCCLD-A-NALFSASGSADFTA 85 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~----~~~~~~~l~gH~~~V~~v~~~-~-~~~~l~s~s~Dg~v 85 (350)
-.||.+=|.++.|++ .|+.+||+|.|.+++|||.. +..+....+.|.++|+.+.|. | -|+.+|++|.|+++
T Consensus 9 ~s~h~DlihdVs~D~---~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv 85 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDF---YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTV 85 (361)
T ss_pred ccCCcceeeeeeecc---cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCce
Confidence 369999999999986 89999999999999999953 234566788999999999994 4 49999999999999
Q ss_pred EEeeCCCCC---------eeeee-eccccEeEEEEcCC--CCeEEEeeCCCeEEEEECCCCCCCC------------eee
Q 018784 86 KLWDALTGD---------EKHSF-EHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPP------------REV 141 (350)
Q Consensus 86 ~vWd~~~~~---------~~~~~-~h~~~V~~~~~~~~--~~~l~sg~~d~~v~vwd~~~~~~~~------------~~~ 141 (350)
+||+-.... ...++ .....|+.+.|.|. |-.||+++.||++|||+...+.... ...
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 999742111 11222 35678999999984 6788999999999999875432111 112
Q ss_pred cCCCCcEEEEEEeCC--CCcEEEEEeCC-----CeEEEEECCCCc----eeEeec-CCCCeEEEEEecCC----cEEEEE
Q 018784 142 GNSSGSIRTVAWLHS--DQTILSSCTDS-----GGVRLWDARSGK----IVQTLE-TKSPVTSAEVSRDG----RYITTA 205 (350)
Q Consensus 142 ~~~~~~v~~~~~~~~--~~~~~~s~~~d-----g~i~iwd~~~~~----~~~~~~-~~~~v~~~~~~~~~----~~l~~~ 205 (350)
+.+.....++.|.+. ...+++.|+++ +.++||....+. .+.++. +..+|+.++|.|+- .+|+++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA 245 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVA 245 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEe
Confidence 235556778888753 23456666554 478999765432 222332 45789999999962 345554
Q ss_pred c-CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCE
Q 018784 206 D-GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES 284 (350)
Q Consensus 206 ~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 284 (350)
. || |+||.++....... .+-+.++..-..+ .-+.+..+.+|.+.|+.++|.=.|..
T Consensus 246 ~kDg-v~I~~v~~~~s~i~----------------~ee~~~~~~~~~l------~v~~vs~~~~H~~~VWrv~wNmtGti 302 (361)
T KOG2445|consen 246 TKDG-VRIFKVKVARSAIE----------------EEEVLAPDLMTDL------PVEKVSELDDHNGEVWRVRWNMTGTI 302 (361)
T ss_pred ecCc-EEEEEEeeccchhh----------------hhcccCCCCcccc------ceEEeeeccCCCCceEEEEEeeeeeE
Confidence 4 45 88888753221000 0000011100111 11334557789999999999999999
Q ss_pred EEEecCCCcEEEecCCCCC
Q 018784 285 YASGSEDGTIRIWQTNPPN 303 (350)
Q Consensus 285 lasgs~Dg~v~vw~~~~~~ 303 (350)
|+|.|.||+||+|.....+
T Consensus 303 LsStGdDG~VRLWkany~n 321 (361)
T KOG2445|consen 303 LSSTGDDGCVRLWKANYNN 321 (361)
T ss_pred EeecCCCceeeehhhhhhh
Confidence 9999999999999865433
No 111
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.93 E-value=2.4e-24 Score=194.95 Aligned_cols=297 Identities=18% Similarity=0.263 Sum_probs=224.4
Q ss_pred cccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc---------------------ee---------
Q 018784 5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---------------------WI--------- 54 (350)
Q Consensus 5 ~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~---------------------~~--------- 54 (350)
++.+=+++.||++-|.+++|.....+.-+|||+|.|..||||.+.-+. .+
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 455666779999999999999877767899999999999999853211 11
Q ss_pred -eeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee-------------------------------------
Q 018784 55 -GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK------------------------------------- 96 (350)
Q Consensus 55 -~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~------------------------------------- 96 (350)
..+.||.+-|+++-|+|.+..|.|+|.|.++.+|...+...+
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg 339 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG 339 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc
Confidence 123599999999999999999999999999999975432110
Q ss_pred -eee---------------eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe---eecCCCCcEEEEEEeCCC
Q 018784 97 -HSF---------------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR---EVGNSSGSIRTVAWLHSD 157 (350)
Q Consensus 97 -~~~---------------~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~ 157 (350)
+.+ .|...|+.++|+|.|.+|++.|.|.+-|+|-....+.... ..+-|.-.+.++++.+.
T Consensus 340 ~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~- 418 (764)
T KOG1063|consen 340 FHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE- 418 (764)
T ss_pred EEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-
Confidence 000 1677899999999999999999999999997652222111 12345566788888754
Q ss_pred CcEEEEEeCCCeEEEEECCC----------C-----c-----------------eeE---------------ee------
Q 018784 158 QTILSSCTDSGGVRLWDARS----------G-----K-----------------IVQ---------------TL------ 184 (350)
Q Consensus 158 ~~~~~s~~~dg~i~iwd~~~----------~-----~-----------------~~~---------------~~------ 184 (350)
...+++|.+...+|+++... + . .+. +.
T Consensus 419 ~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~ 498 (764)
T KOG1063|consen 419 DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPC 498 (764)
T ss_pred CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCch
Confidence 66788998888899997532 1 0 000 00
Q ss_pred ------------------------cCCCCeEEEEEecCCcEEEEEc------CCcEEEEECCCcceeeeeecCCCCceeE
Q 018784 185 ------------------------ETKSPVTSAEVSRDGRYITTAD------GSSVKFWDANHFGLVKGYNMPCNTESAS 234 (350)
Q Consensus 185 ------------------------~~~~~v~~~~~~~~~~~l~~~~------~~~i~vwd~~~~~~~~~~~~~~~~~~~~ 234 (350)
.+...+.+++.+|++++++++. ...|++|+..+...++.+..+.......
T Consensus 499 ~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 499 ELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRL 578 (764)
T ss_pred hccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEE
Confidence 0112588999999999998863 2359999998877777666666555555
Q ss_pred ecCCCCcEEEEecCCCeEEEEEcccCee----EEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQ----IGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP 302 (350)
Q Consensus 235 ~~~~~~~~l~sg~~d~~i~v~d~~~~~~----~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~ 302 (350)
..++++++|++.+.|+++.+|....... ....+.|..-|++..|+|++.++||+|.|.+|++|.....
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 5555799999999999999998754332 2346789999999999999999999999999999987654
No 112
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=5.7e-24 Score=191.01 Aligned_cols=280 Identities=19% Similarity=0.284 Sum_probs=199.6
Q ss_pred EEEecccCCCccEEEEEeCCCCeeEeeCCCCce------eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC
Q 018784 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDW------IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD 94 (350)
Q Consensus 21 ~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~------~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~ 94 (350)
++.|++-....++||.+-.||.|.|+|...... ++....|.+.|.-+.|-|-...|++++.|.++|+||+.++.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 466776555568999999999999999765433 24567899999999999977789999999999999998887
Q ss_pred eee---eeeccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCC-------------------CCe-------eecCC
Q 018784 95 EKH---SFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDA-------------------PPR-------EVGNS 144 (350)
Q Consensus 95 ~~~---~~~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~-------------------~~~-------~~~~~ 144 (350)
... .+.|...|.+++|.|.. ..|++|+.|+.|.|||+.-... +.. ....+
T Consensus 134 l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~ 213 (720)
T KOG0321|consen 134 LVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAA 213 (720)
T ss_pred eecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccc
Confidence 554 35899999999999954 6788999999999999742110 000 00112
Q ss_pred CCcEEE---EEEeCCCCcEEEEEeC-CCeEEEEECCCCceeEeec------C--C----CCeEEEEEecCCcEE-EEEcC
Q 018784 145 SGSIRT---VAWLHSDQTILSSCTD-SGGVRLWDARSGKIVQTLE------T--K----SPVTSAEVSRDGRYI-TTADG 207 (350)
Q Consensus 145 ~~~v~~---~~~~~~~~~~~~s~~~-dg~i~iwd~~~~~~~~~~~------~--~----~~v~~~~~~~~~~~l-~~~~~ 207 (350)
.+.+.+ +.++. |+..+++++. |+.|++||++........+ . + -.+.++.....|.+| +...|
T Consensus 214 s~ti~ssvTvv~fk-De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 214 SNTIFSSVTVVLFK-DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred cCceeeeeEEEEEe-ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 233333 33443 4455666555 9999999999765433221 1 1 245666666667665 55579
Q ss_pred CcEEEEECCCcce--eeeeecCCC--CceeEecCCCCcEEEEecCCCeEEEEEcccCee-EEeecCCCcCEEEEEEcCCC
Q 018784 208 SSVKFWDANHFGL--VKGYNMPCN--TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ-IGCNKGHHGPVHCVRFSPGG 282 (350)
Q Consensus 208 ~~i~vwd~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~-~~~~~~h~~~v~~l~~sp~~ 282 (350)
+.|.+|++++... +..+....+ .........++.++++|+.|...++|.+.+.+. ...+.||...|++++|.|..
T Consensus 293 ~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 293 NSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred CcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeecccc
Confidence 9999999987542 222221111 112223344689999999999999999988654 45678999999999999853
Q ss_pred -CEEEEecCCCcEEEecCCC
Q 018784 283 -ESYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 283 -~~lasgs~Dg~v~vw~~~~ 301 (350)
.-+++++.|-++++|++..
T Consensus 373 ~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred CCCceeeccCcceEEEeccC
Confidence 3367779999999999843
No 113
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.8e-23 Score=163.28 Aligned_cols=247 Identities=21% Similarity=0.340 Sum_probs=189.2
Q ss_pred ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC------C----CC------eeeeeeccccEeEEEEcCCCC
Q 018784 52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL------T----GD------EKHSFEHKHIVRACAFSEDTH 115 (350)
Q Consensus 52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~------~----~~------~~~~~~h~~~V~~~~~~~~~~ 115 (350)
+++.+|+ -+..|++++|+|.|.+.|.||...+.||--.. . .+ ++....|++.|+|.+|+|.|+
T Consensus 24 ~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge 102 (350)
T KOG0641|consen 24 EAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE 102 (350)
T ss_pred EEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC
Confidence 3455555 46789999999999999999999999997421 1 11 111224889999999999999
Q ss_pred eEEEeeCCCeEEEEECCCCCC----CCeeecCCCCcEEEEEEeCC---CCcEEEEEe-CCCeEEEEECCCCceeEeecCC
Q 018784 116 LLLTGGFEKILRIFDLNRPDA----PPREVGNSSGSIRTVAWLHS---DQTILSSCT-DSGGVRLWDARSGKIVQTLETK 187 (350)
Q Consensus 116 ~l~sg~~d~~v~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~---~~~~~~s~~-~dg~i~iwd~~~~~~~~~~~~~ 187 (350)
++++|+.|.+|++...+.... .-..+.-|.+.|+.++|... .+.++++++ .|-.|++-|...|+.++.+..+
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh 182 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH 182 (350)
T ss_pred eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence 999999999999986543221 12244568899999999853 345666554 5567777788899988888766
Q ss_pred C-CeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCC--------CCceeEecCCCCcEEEEecCCCeEEEEEc
Q 018784 188 S-PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPC--------NTESASLEPKLGNIFIAGGEDMWVHVFDF 257 (350)
Q Consensus 188 ~-~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~sg~~d~~i~v~d~ 257 (350)
. -|.++ ++=++-+++++ .|.+||+||+|-..+++.+.-.. ....+.+.| .+++|++|-.|....+||+
T Consensus 183 tghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~dssc~lydi 260 (350)
T KOG0641|consen 183 TGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHADSSCMLYDI 260 (350)
T ss_pred cccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC-CcceeeeccCCCceEEEEe
Confidence 4 34443 44456666665 47899999999888877653211 122334444 5899999999999999999
Q ss_pred ccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784 258 HTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 258 ~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~ 301 (350)
+.++++..+..|+..|.++.|+|.-.||.++|.|..|++=|+..
T Consensus 261 rg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 261 RGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred eCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 99999999999999999999999999999999999999998853
No 114
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=1.8e-23 Score=192.93 Aligned_cols=291 Identities=19% Similarity=0.251 Sum_probs=214.9
Q ss_pred EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCc-EEEEeeCCCeEEEee
Q 018784 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWD 89 (350)
Q Consensus 11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~-~l~s~s~Dg~v~vWd 89 (350)
.++++...|+++--+| -=..+|.|..+|+|.|.++..++.+.+|+--.++|.+++|..||. ++|+|+..|.+-+||
T Consensus 197 ~f~~~~s~IT~ieqsP---aLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wD 273 (910)
T KOG1539|consen 197 TFQEFFSRITAIEQSP---ALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWD 273 (910)
T ss_pred EecccccceeEeccCC---cceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEE
Confidence 3589999999996665 556999999999999999999999999985579999999999986 678888889999999
Q ss_pred CCCCCeeeee--eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC---eeecCCCCcEEEEEEeC---------
Q 018784 90 ALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWLH--------- 155 (350)
Q Consensus 90 ~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~--------- 155 (350)
++..+....+ .|.+.|....|-|....+++++.|..+++|=.+++...+ +...+|..+..++.|..
T Consensus 274 Le~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa 353 (910)
T KOG1539|consen 274 LEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSA 353 (910)
T ss_pred cCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEec
Confidence 9887766554 488899999999999999999999999988433221111 11112222222222221
Q ss_pred --------------------------------------------------------------------------------
Q 018784 156 -------------------------------------------------------------------------------- 155 (350)
Q Consensus 156 -------------------------------------------------------------------------------- 155 (350)
T Consensus 354 ~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~ 433 (910)
T KOG1539|consen 354 KQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT 433 (910)
T ss_pred ccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc
Confidence
Q ss_pred ------------------------CCCcEEEEEeCCCeEEEEECCCCceeEee----cCCCCeEEEEEecCCcEEE-EEc
Q 018784 156 ------------------------SDQTILSSCTDSGGVRLWDARSGKIVQTL----ETKSPVTSAEVSRDGRYIT-TAD 206 (350)
Q Consensus 156 ------------------------~~~~~~~s~~~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~-~~~ 206 (350)
..+++.+.|+..|+|-++++.+|-....+ .+..+|+.++...-++.++ ++.
T Consensus 434 ~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~ 513 (910)
T KOG1539|consen 434 SGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGA 513 (910)
T ss_pred cccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccC
Confidence 12334444455566666666666554444 2345677777666555444 445
Q ss_pred CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEE
Q 018784 207 GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYA 286 (350)
Q Consensus 207 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~la 286 (350)
+|.+++||..+..++............. ......+++.+..|-.|+++|..+.+.++.+.||.+.|++++|||||++|+
T Consensus 514 ~Gilkfw~f~~k~l~~~l~l~~~~~~iv-~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWli 592 (910)
T KOG1539|consen 514 DGILKFWDFKKKVLKKSLRLGSSITGIV-YHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLI 592 (910)
T ss_pred cceEEEEecCCcceeeeeccCCCcceee-eeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEE
Confidence 7888888887776666555543333222 223356788888999999999999999999999999999999999999999
Q ss_pred EecCCCcEEEecCCCCCcc
Q 018784 287 SGSEDGTIRIWQTNPPNHE 305 (350)
Q Consensus 287 sgs~Dg~v~vw~~~~~~~~ 305 (350)
+++.|++|++||+.+....
T Consensus 593 sasmD~tIr~wDlpt~~lI 611 (910)
T KOG1539|consen 593 SASMDSTIRTWDLPTGTLI 611 (910)
T ss_pred EeecCCcEEEEeccCccee
Confidence 9999999999999876665
No 115
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=1.2e-22 Score=179.75 Aligned_cols=259 Identities=16% Similarity=0.130 Sum_probs=189.5
Q ss_pred eccCCceeEEEecccCCCccEE-EEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEE-EeeCCCeEEEeeC
Q 018784 13 HGHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSADFTAKLWDA 90 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~dg~~l-asgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~-s~s~Dg~v~vWd~ 90 (350)
.+|.. +..+.|+| +|+.+ ++++.|+.+++||..+++.+..+..|.. +..+++++++..++ +++.|+.|++||+
T Consensus 28 ~~~~~-~~~l~~~~---dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~ 102 (300)
T TIGR03866 28 PVGQR-PRGITLSK---DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDI 102 (300)
T ss_pred ECCCC-CCceEECC---CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 44443 56788876 88765 6778899999999999998887776544 45788999988664 5567899999999
Q ss_pred CCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCC-eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784 91 LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK-ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (350)
Q Consensus 91 ~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~-~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~ 169 (350)
.+.+.+..+.+...+.+++|+|++.++++++.++ .+.+||..+........ ....+..++|++.++.+++++..++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~ 180 (300)
T TIGR03866 103 ETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKELWVSSEIGGT 180 (300)
T ss_pred CCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCEEEEEcCCCCE
Confidence 8877776666555678999999999999888765 56778986543322111 22345678888776666677777899
Q ss_pred EEEEECCCCceeEeecCC--------CCeEEEEEecCCcEEEE--EcCCcEEEEECCCcceeeeeecCCCCceeEecCCC
Q 018784 170 VRLWDARSGKIVQTLETK--------SPVTSAEVSRDGRYITT--ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKL 239 (350)
Q Consensus 170 i~iwd~~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~--~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (350)
|++||+++++.+..+... .....+.++|+++++.. +.++.+.+||+++++.............+.+.+ +
T Consensus 181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~ 259 (300)
T TIGR03866 181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTP-D 259 (300)
T ss_pred EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECC-C
Confidence 999999999876665421 12345789999987543 345689999999877765544344455666766 4
Q ss_pred CcEEEEe-cCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcC
Q 018784 240 GNIFIAG-GEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSP 280 (350)
Q Consensus 240 ~~~l~sg-~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp 280 (350)
+++|+++ +.++.|++||+.+++.+..+... ...+.++|+|
T Consensus 260 g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 260 EKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 6666654 57899999999999998888754 4558888875
No 116
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=6.6e-26 Score=205.93 Aligned_cols=234 Identities=22% Similarity=0.295 Sum_probs=189.5
Q ss_pred eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~ 92 (350)
-.|...|.++..- ..++.+++|+.|..+.+|.......+..|.+|+.+|.++.|+++..+++.|+.||+||+||+++
T Consensus 25 ~~hsaav~~lk~~---~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 25 VAHSAAVGCLKIR---KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhceeeee---ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 3588888887642 3678999999999999999888888888999999999999999999999999999999999999
Q ss_pred CCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784 93 GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (350)
Q Consensus 93 ~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~ 171 (350)
.+.++++ .|...+.+++|+|.+.++++|+.|.-+++||.....+.... ..|...+..+.|. +++++++++++|.+++
T Consensus 102 Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~-~s~~~vv~~l~ls-P~Gr~v~~g~ed~tvk 179 (825)
T KOG0267|consen 102 AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY-KSHTRVVDVLRLS-PDGRWVASGGEDNTVK 179 (825)
T ss_pred hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeee-cCCcceeEEEeec-CCCceeeccCCcceee
Confidence 8877776 68889999999999999999999999999999865554444 4477777777776 5778899999999999
Q ss_pred EEECCCCceeEeec-CCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCC
Q 018784 172 LWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM 250 (350)
Q Consensus 172 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~ 250 (350)
|||...|+.+..+. +...+.++.|+|..-+ +++|+.|+
T Consensus 180 i~d~~agk~~~ef~~~e~~v~sle~hp~e~L-----------------------------------------la~Gs~d~ 218 (825)
T KOG0267|consen 180 IWDLTAGKLSKEFKSHEGKVQSLEFHPLEVL-----------------------------------------LAPGSSDR 218 (825)
T ss_pred eecccccccccccccccccccccccCchhhh-----------------------------------------hccCCCCc
Confidence 99999999988887 4456666666664433 44555556
Q ss_pred eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCC
Q 018784 251 WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292 (350)
Q Consensus 251 ~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg 292 (350)
++++||+++-+.+.........|.+++|+|++..+++|.++.
T Consensus 219 tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 219 TVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 666666555555555555566788899999988888877654
No 117
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=1.4e-23 Score=181.88 Aligned_cols=287 Identities=20% Similarity=0.221 Sum_probs=217.8
Q ss_pred EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC----ceeeeccCccCCeEEEEECCCC-cEEEEeeCCCeE
Q 018784 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG----DWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTA 85 (350)
Q Consensus 11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~----~~~~~l~gH~~~V~~v~~~~~~-~~l~s~s~Dg~v 85 (350)
|.+-|.++|++++|+|..+ -++||+|..-|+|-+||+.+. .-+.-+..|+.+|.++.|+|.. ..+.+.|.||+|
T Consensus 181 v~kv~~~Rit~l~fHPt~~-~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTEN-RKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred eeEecccceEEEEecccCc-ceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 4577899999999999543 369999999999999998433 2345678899999999999854 577899999999
Q ss_pred EEeeCCCCCeeeeee---ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEE
Q 018784 86 KLWDALTGDEKHSFE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS 162 (350)
Q Consensus 86 ~vWd~~~~~~~~~~~---h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 162 (350)
|+=|++.+.....+. .......++|+.+...++.+..=|...+||+..+........-|...|.++++.|....+++
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 999998765433332 23356788898888888888877799999998766544444556679999999999999999
Q ss_pred EEeCCCeEEEEECCCCc-----eeEeecCCCCeEEEEEecCC-cEEEEEcCCcEEEEECC----CcceeeeeecCCC---
Q 018784 163 SCTDSGGVRLWDARSGK-----IVQTLETKSPVTSAEVSRDG-RYITTADGSSVKFWDAN----HFGLVKGYNMPCN--- 229 (350)
Q Consensus 163 s~~~dg~i~iwd~~~~~-----~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~i~vwd~~----~~~~~~~~~~~~~--- 229 (350)
+|+-|++.+|||+|.-. .+..+.+...|.+..|+|.+ .+++++.|..|||||.. ...+...+...+.
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~R 419 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGR 419 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccc
Confidence 99999999999998632 25566777899999999965 66677789999999984 2222223322221
Q ss_pred ---CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCc-CEEE-EEEcCCCCEEEE-ecCCCcEEEecC
Q 018784 230 ---TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHG-PVHC-VRFSPGGESYAS-GSEDGTIRIWQT 299 (350)
Q Consensus 230 ---~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~-~v~~-l~~sp~~~~las-gs~Dg~v~vw~~ 299 (350)
...+.+.| +..++++|-.-..|-+||-..++.+..+..... .|.+ ..|+|-+..+++ |+.-|.|+||.-
T Consensus 420 wlT~fKA~W~P-~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 420 WLTPFKAAWDP-DYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cccchhheeCC-CccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 12344555 568899999999999999988888777654433 4554 579999885555 556789999954
No 118
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=3e-24 Score=188.49 Aligned_cols=251 Identities=21% Similarity=0.325 Sum_probs=187.6
Q ss_pred CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe----eeeee--ccccEeEEEEcCCCCeEEEeeCCC
Q 018784 51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE----KHSFE--HKHIVRACAFSEDTHLLLTGGFEK 124 (350)
Q Consensus 51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~----~~~~~--h~~~V~~~~~~~~~~~l~sg~~d~ 124 (350)
+..--.|.+|+..|.++++.|.|..|+|||-|-+|++||+..... ...+. ....|+++.|++.+..|++.+...
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a 236 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA 236 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc
Confidence 334457899999999999999999999999999999999864332 11221 345799999999999999999999
Q ss_pred eEEEEECCCCCCC-----------CeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc-eeEeecC------
Q 018784 125 ILRIFDLNRPDAP-----------PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLET------ 186 (350)
Q Consensus 125 ~v~vwd~~~~~~~-----------~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~-~~~~~~~------ 186 (350)
..+|+|-+..... ....++|...+++.+|.|.....+++|+.||++|+||+...+ .+..+.+
T Consensus 237 qakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~ 316 (641)
T KOG0772|consen 237 QAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK 316 (641)
T ss_pred ceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc
Confidence 9999997532211 112356777888889998888889999999999999997653 2333332
Q ss_pred CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcc-----eeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccC
Q 018784 187 KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG-----LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG 260 (350)
Q Consensus 187 ~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~ 260 (350)
.-++++++|+++|++++++ .||.|.+|+.+... .++.-+.+....++..+..++++|++-+.|+++++||++..
T Consensus 317 Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~ 396 (641)
T KOG0772|consen 317 RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF 396 (641)
T ss_pred ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence 2468999999999998776 58999999976532 22222333333344444457999999999999999999875
Q ss_pred e-eEEeecCCC--cCEEEEEEcCCCCEEEEecC------CCcEEEecCCC
Q 018784 261 E-QIGCNKGHH--GPVHCVRFSPGGESYASGSE------DGTIRIWQTNP 301 (350)
Q Consensus 261 ~-~~~~~~~h~--~~v~~l~~sp~~~~lasgs~------Dg~v~vw~~~~ 301 (350)
+ ++....+-. -+-+.++|||+.+++++|.. .|.+.++|..+
T Consensus 397 kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 397 KKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred ccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 4 455444433 24578999999999999874 46788887653
No 119
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=2.5e-23 Score=169.05 Aligned_cols=206 Identities=19% Similarity=0.286 Sum_probs=167.3
Q ss_pred eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC
Q 018784 98 SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177 (350)
Q Consensus 98 ~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~ 177 (350)
...|..+++.+.|+.+|.+|.+++.|.+..+|-...++. ......|.+.|+++... .+...+++|+.|.++++||+++
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer-lGty~GHtGavW~~Did-~~s~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER-LGTYDGHTGAVWCCDID-WDSKHLITGSADQTAKLWDVET 83 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCce-eeeecCCCceEEEEEec-CCcceeeeccccceeEEEEcCC
Confidence 346999999999999999999999999999997654443 34557799999999865 4567788999999999999999
Q ss_pred CceeEeecCCCCeEEEEEecCCcEEEEEcC------CcEEEEECCC-------cceeeeeecCCCCceeEecCCCCcEEE
Q 018784 178 GKIVQTLETKSPVTSAEVSRDGRYITTADG------SSVKFWDANH-------FGLVKGYNMPCNTESASLEPKLGNIFI 244 (350)
Q Consensus 178 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------~~i~vwd~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (350)
|+++..++.+.++..+.|+++|.+++.+.| +.|.++|++. ..++..+..+........-.+.++.++
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 999999999999999999999988766543 4699999983 233444443332222333334589999
Q ss_pred EecCCCeEEEEEcccCee-EEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784 245 AGGEDMWVHVFDFHTGEQ-IGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305 (350)
Q Consensus 245 sg~~d~~i~v~d~~~~~~-~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~ 305 (350)
+|.+||.|..||+++|.+ +.....|...|+.|+|+||..++++||.|.+-++||....+.+
T Consensus 164 ~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~ 225 (327)
T KOG0643|consen 164 AGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL 225 (327)
T ss_pred EecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeE
Confidence 999999999999999855 4555789999999999999999999999999999998754443
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4e-23 Score=179.46 Aligned_cols=265 Identities=20% Similarity=0.274 Sum_probs=205.3
Q ss_pred EEEEEeCCCC-eeEeeCCCCceeeeccCcc-CCeEEEEECCCCcEEE-EeeCCCeEEEeeCCCCCeee-eeeccccEeEE
Q 018784 33 FLVSASKDSS-PMLRNGETGDWIGTFEGHK-GAVWSCCLDANALFSA-SGSADFTAKLWDALTGDEKH-SFEHKHIVRAC 108 (350)
Q Consensus 33 ~lasgs~d~~-v~iw~~~~~~~~~~l~gH~-~~V~~v~~~~~~~~l~-s~s~Dg~v~vWd~~~~~~~~-~~~h~~~V~~~ 108 (350)
++.++|.|.. +.+||+.+|.-+.++++-. ..-.++.. -.+.+++ +-..-..+-+|.+....... ..--++.|.++
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al 87 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL 87 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEecCcccccchhhhh-hchhheeeecccCccccccccCchhhhhhhcccccceeee
Confidence 4455566655 8999999999888887642 11112211 1223444 34455688999986554433 34467889999
Q ss_pred EEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECC---------CCc
Q 018784 109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR---------SGK 179 (350)
Q Consensus 109 ~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~---------~~~ 179 (350)
+-+|.|.+|+.|...+.+.+|.+.++...... ..|-..|+++.|+. ++.++++|+.||.|.+|++. +-+
T Consensus 88 ~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~-~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~ 165 (476)
T KOG0646|consen 88 ASSNLGYFLLAGTISGNLYLWELSSGILLNVL-SAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVK 165 (476)
T ss_pred ecCCCceEEEeecccCcEEEEEeccccHHHHH-HhhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence 99999999999989999999999988765544 66778899999984 66788899999999999763 234
Q ss_pred eeEeecCC-CCeEEEEEec---CCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEE
Q 018784 180 IVQTLETK-SPVTSAEVSR---DGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF 255 (350)
Q Consensus 180 ~~~~~~~~-~~v~~~~~~~---~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~ 255 (350)
++..+..| -+|+++.+.+ +.++++++.|.++++||+..+.++.++.++....++.+.|. .+.+.+|+.+|.|.+.
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpa-e~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPA-ERVVYIGTEEGKIFQN 244 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEccc-ccEEEecCCcceEEee
Confidence 55556544 5788888875 45778888899999999999999999999888888888874 6788899999999988
Q ss_pred EcccC----------------eeEEeecCCCc--CEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784 256 DFHTG----------------EQIGCNKGHHG--PVHCVRFSPGGESYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 256 d~~~~----------------~~~~~~~~h~~--~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~ 301 (350)
++... ..+..+.||.+ .|+|++++-||.+|+||+.||.|+|||...
T Consensus 245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S 308 (476)
T KOG0646|consen 245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYS 308 (476)
T ss_pred ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecch
Confidence 76432 23456789988 999999999999999999999999999753
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1e-23 Score=184.60 Aligned_cols=277 Identities=17% Similarity=0.212 Sum_probs=214.6
Q ss_pred ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC---CCceeeeccC--ccCCeEEEEECCCCcEEEEeeCCCeEEEe
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE---TGDWIGTFEG--HKGAVWSCCLDANALFSASGSADFTAKLW 88 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~---~~~~~~~l~g--H~~~V~~v~~~~~~~~l~s~s~Dg~v~vW 88 (350)
.|.+-|-++..+. ..+.+.||+. |.|+|||+. +..++..|.. ..+-|+++.+.+|++.|++||.--++-||
T Consensus 417 ~HGEvVcAvtIS~---~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISN---PTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecC---CcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeee
Confidence 5777776776554 6678999887 889999974 2345555654 34678999999999999999999999999
Q ss_pred eCCCCCeeeeeec---cccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe
Q 018784 89 DALTGDEKHSFEH---KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (350)
Q Consensus 89 d~~~~~~~~~~~h---~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 165 (350)
|+..........- ....++++.+||.+...++..||.|.|||+..... .+.+..|...+.++..++ ++.-+-+|+
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~-VrqfqGhtDGascIdis~-dGtklWTGG 570 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISK-DGTKLWTGG 570 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccccee-eecccCCCCCceeEEecC-CCceeecCC
Confidence 9976654443322 23578899999999999999999999999986544 456677888888888764 566778899
Q ss_pred CCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCC-CceeEecCCCCcEE
Q 018784 166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIF 243 (350)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 243 (350)
-|++||.||+|+++.+..-...+.|.++..+|++.+++.+ .++.+.+.........+ +..+.. ..++.|. ..|+.+
T Consensus 571 lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq-lhlheScVLSlKFa-~cGkwf 648 (705)
T KOG0639|consen 571 LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ-LHLHESCVLSLKFA-YCGKWF 648 (705)
T ss_pred CccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcccee-ecccccEEEEEEec-ccCcee
Confidence 9999999999999988888888899999999999998776 56677777665432211 111111 1222333 358999
Q ss_pred EEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784 244 IAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (350)
Q Consensus 244 ~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~ 299 (350)
++.+.|+.+..|..--|..+...+ ...+|.++.+|.|.++++|||-|....||.+
T Consensus 649 vStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 999999999999988887776554 3557999999999999999999988888864
No 122
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.4e-22 Score=168.49 Aligned_cols=275 Identities=17% Similarity=0.268 Sum_probs=189.1
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCce-----ee-ecc-CccCCeEEEEECCCCcE-EEEeeCCC
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-----IG-TFE-GHKGAVWSCCLDANALF-SASGSADF 83 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~-----~~-~l~-gH~~~V~~v~~~~~~~~-l~s~s~Dg 83 (350)
++||++.|++++|++ ||++|||++.|++|+||++.+.+. ++ +++ +|. +.|.|.||..- +++.-...
T Consensus 82 LKgH~~~vt~~~FsS---dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhp---T~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSS---DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHP---TRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhccCCceeeeEEcC---CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCc---eEEEECCCcceEEEEEccCC
Confidence 589999999999997 999999999999999999876422 11 122 233 56789999864 45556667
Q ss_pred eEEEeeCCCCC---eeee--------e--eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEE
Q 018784 84 TAKLWDALTGD---EKHS--------F--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT 150 (350)
Q Consensus 84 ~v~vWd~~~~~---~~~~--------~--~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~ 150 (350)
++++|.....+ ..+. + .|.-.+..+....++.+|++++.|..|.+|++. ++.. ..+......-+.
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L-~~idtnq~~n~~ 233 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL-QSIDTNQSSNYD 233 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee-eeeccccccccc
Confidence 89999764322 1111 1 144456677778899999999999999999997 3322 221111112233
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEEC---CCCc-----eeEeecC-CCCeEEEEEecCCcEEE-EEcCCcEEEEECCC---
Q 018784 151 VAWLHSDQTILSSCTDSGGVRLWDA---RSGK-----IVQTLET-KSPVTSAEVSRDGRYIT-TADGSSVKFWDANH--- 217 (350)
Q Consensus 151 ~~~~~~~~~~~~s~~~dg~i~iwd~---~~~~-----~~~~~~~-~~~v~~~~~~~~~~~l~-~~~~~~i~vwd~~~--- 217 (350)
.+. .++++++++++..-.|++|.+ +.|. .+..++. .+.|..++|+++.+.++ .+.||.+|+||+.-
T Consensus 234 aav-SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 234 AAV-SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred eee-CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence 343 467888888888888999986 2332 2334443 56899999999987665 56799999999742
Q ss_pred ----cceeeeeecC-----CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec-CCCcCEEEEEEcCCCCEEEE
Q 018784 218 ----FGLVKGYNMP-----CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK-GHHGPVHCVRFSPGGESYAS 287 (350)
Q Consensus 218 ----~~~~~~~~~~-----~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~-~h~~~v~~l~~sp~~~~las 287 (350)
...++....+ ..+..+.++| .++.|+. +....+++|..++|+...++. .|+..|.+++|+++|++++|
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~-s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~at 390 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAV-SFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIAT 390 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEe-ecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEee
Confidence 1112222111 1233455555 3565554 345679999999988877664 79999999999999999999
Q ss_pred ecCCCcEEEec
Q 018784 288 GSEDGTIRIWQ 298 (350)
Q Consensus 288 gs~Dg~v~vw~ 298 (350)
++. ..+++..
T Consensus 391 cGd-r~vrv~~ 400 (420)
T KOG2096|consen 391 CGD-RYVRVIR 400 (420)
T ss_pred ecc-eeeeeec
Confidence 874 5677764
No 123
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.92 E-value=5.3e-23 Score=185.70 Aligned_cols=270 Identities=20% Similarity=0.332 Sum_probs=208.4
Q ss_pred ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee
Q 018784 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH 97 (350)
Q Consensus 18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~ 97 (350)
-|..++|.| ||..|+.+. +..+.|||...|..+.+|+||.+.|++|+++.+|+.+|||+.|..|.+|... -+...
T Consensus 14 ci~d~afkP---DGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKP---DGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGIL 88 (1081)
T ss_pred chheeEECC---CCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-cccee
Confidence 789999987 998776654 3568999999999999999999999999999999999999999999999853 34556
Q ss_pred eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC
Q 018784 98 SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177 (350)
Q Consensus 98 ~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~ 177 (350)
.+.|+..+.|+.|+|-.+.|++++-.. .-+|..+.. ..........+.+++|.. ++.+++-|..+|||.+-+ .+
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~qK---~V~K~kss~R~~~CsWtn-DGqylalG~~nGTIsiRN-k~ 162 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPEQK---SVSKHKSSSRIICCSWTN-DGQYLALGMFNGTISIRN-KN 162 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchhh-ccccChhhh---hHHhhhhheeEEEeeecC-CCcEEEEeccCceEEeec-CC
Confidence 678999999999999999999987543 456765422 112223355688888875 566777788899999985 44
Q ss_pred CceeEeec----CCCCeEEEEEecCC-----cEEE-EEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEec
Q 018784 178 GKIVQTLE----TKSPVTSAEVSRDG-----RYIT-TADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG 247 (350)
Q Consensus 178 ~~~~~~~~----~~~~v~~~~~~~~~-----~~l~-~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~ 247 (350)
+++...++ .+++|.+++|+|.. ..++ ..-+.++.++.+.....-+...+.-.+.+++.++ +|++++.|+
T Consensus 163 gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~-NGEy~LiGG 241 (1081)
T KOG1538|consen 163 GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFT-NGEYILLGG 241 (1081)
T ss_pred CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheecc-CCcEEEEcc
Confidence 55444444 35789999999853 2343 3346788888776543333334444445555555 589999999
Q ss_pred CCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 248 EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 248 ~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
.|+.+++|- +.|-.+.++.....+||.+...|++++++.|+.||+|-.|++-
T Consensus 242 sdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 242 SDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred CCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 999999995 5677777777778899999999999999999999999999864
No 124
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.6e-23 Score=180.95 Aligned_cols=232 Identities=25% Similarity=0.366 Sum_probs=179.8
Q ss_pred ccEEEEEeCCCCeeEeeCCCC---ceee------------------eccCccCCeEEEEECCC-CcEEEEeeCCCeEEEe
Q 018784 31 GFFLVSASKDSSPMLRNGETG---DWIG------------------TFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLW 88 (350)
Q Consensus 31 g~~lasgs~d~~v~iw~~~~~---~~~~------------------~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vW 88 (350)
|.|+|.|+.|..|.|||+.-. .+.. ..++|+..|.+++|... ...|||||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 679999999999999996421 1111 23479999998888765 4589999999999999
Q ss_pred eCCCCCeeeeee-ccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784 89 DALTGDEKHSFE-HKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD 166 (350)
Q Consensus 89 d~~~~~~~~~~~-h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~ 166 (350)
|+.++++..++. |.+.|.++.|+| ....|++|+.|++|++.|++.+....... ...+.|-.++|.+.....++++.+
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEEecC
Confidence 999999999887 788999999998 46789999999999999998644333222 245678999999888888889999
Q ss_pred CCeEEEEECCCC-ceeEeecC-CCCeEEEEEecCCc-EE-EEEcCCcEEEEECCCcc--eeeeeecCCC-CceeEecCCC
Q 018784 167 SGGVRLWDARSG-KIVQTLET-KSPVTSAEVSRDGR-YI-TTADGSSVKFWDANHFG--LVKGYNMPCN-TESASLEPKL 239 (350)
Q Consensus 167 dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~~~~~~-~l-~~~~~~~i~vwd~~~~~--~~~~~~~~~~-~~~~~~~~~~ 239 (350)
||+|+-+|+|+. +++.+++. ..+|..+++++... ++ +++.++.|++|++.... .++...+... ..+..+.+..
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~ 430 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDV 430 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCc
Confidence 999999999975 88988885 46899999987543 33 44568999999975432 3333222221 3344555666
Q ss_pred CcEEEEecCCCeEEEEEcccCeeE
Q 018784 240 GNIFIAGGEDMWVHVFDFHTGEQI 263 (350)
Q Consensus 240 ~~~l~sg~~d~~i~v~d~~~~~~~ 263 (350)
...++.|+..+.+++||+.+...+
T Consensus 431 a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 431 AFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ceEEEecCccceEEEeecccChhH
Confidence 788999999999999999876554
No 125
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=2.5e-22 Score=185.43 Aligned_cols=286 Identities=20% Similarity=0.257 Sum_probs=223.6
Q ss_pred cceeEeeccC-CceeEEEecccCCCcc-EEEEEeCCCCeeEeeCCCCceeeecc-CccCCeEEEEECCCCcEEEEeeCCC
Q 018784 7 AVPLVCHGHS-RPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADF 83 (350)
Q Consensus 7 ~~~~~~~gH~-~~v~~~~~~~~s~dg~-~lasgs~d~~v~iw~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~l~s~s~Dg 83 (350)
+.=+.-.-|. ++|+.+.|.- ||. +||+|+..|.+-+||++..+....+. .|.++|....|-+....++|++.|.
T Consensus 234 dkil~sFk~d~g~VtslSFrt---DG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~Dn 310 (910)
T KOG1539|consen 234 DKILMSFKQDWGRVTSLSFRT---DGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADN 310 (910)
T ss_pred CcEEEEEEccccceeEEEecc---CCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCC
Confidence 3333334565 8999999974 774 67888888999999999888877665 7888888888888888888888888
Q ss_pred eEEEeeCCCCCe--------------------------------------------------------------------
Q 018784 84 TAKLWDALTGDE-------------------------------------------------------------------- 95 (350)
Q Consensus 84 ~v~vWd~~~~~~-------------------------------------------------------------------- 95 (350)
++++|=..++..
T Consensus 311 Slk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~ 390 (910)
T KOG1539|consen 311 SLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFST 390 (910)
T ss_pred ceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccch
Confidence 888883321100
Q ss_pred ---------------------------------------------eeeeecc------ccEeEEEEcCCCCeEEEeeCCC
Q 018784 96 ---------------------------------------------KHSFEHK------HIVRACAFSEDTHLLLTGGFEK 124 (350)
Q Consensus 96 ---------------------------------------------~~~~~h~------~~V~~~~~~~~~~~l~sg~~d~ 124 (350)
.+.+.++ ..+.+++.++-|++.+.|...|
T Consensus 391 ~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G 470 (910)
T KOG1539|consen 391 EKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKG 470 (910)
T ss_pred hhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCC
Confidence 0111122 3578889999999999999999
Q ss_pred eEEEEECCCCCCCCee--ecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEE
Q 018784 125 ILRIFDLNRPDAPPRE--VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYI 202 (350)
Q Consensus 125 ~v~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l 202 (350)
+|.+|++.++-..... ...|.+.|+.++.. .-++.+++++.+|.+++||......+..+....++..+..+....++
T Consensus 471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D-~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~ 549 (910)
T KOG1539|consen 471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVD-GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLL 549 (910)
T ss_pred eEEEEEcccCeeecccccCccccCceeEEEec-CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhh
Confidence 9999999765433333 35788999999864 45667888999999999999998888888888888888777665555
Q ss_pred EE-EcCCcEEEEECCCcceeeeeecCCCCce-eEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcC
Q 018784 203 TT-ADGSSVKFWDANHFGLVKGYNMPCNTES-ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSP 280 (350)
Q Consensus 203 ~~-~~~~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp 280 (350)
+. .++-.|+++|..+.+.++.+..+.+... ..|+ ++++.+++++.|++|++||+-++.++-.+. -..+..++.|+|
T Consensus 550 a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS-~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SP 627 (910)
T KOG1539|consen 550 AIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS-PDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSP 627 (910)
T ss_pred hhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC-CCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECC
Confidence 54 4566899999999999988886665544 4555 479999999999999999999999886553 356789999999
Q ss_pred CCCEEEEecCC-CcEEEec
Q 018784 281 GGESYASGSED-GTIRIWQ 298 (350)
Q Consensus 281 ~~~~lasgs~D-g~v~vw~ 298 (350)
+|.+||+...| .-|++|-
T Consensus 628 ngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 628 NGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CCCEEEEEEecCceEEEEE
Confidence 99999999998 6799995
No 126
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=2.5e-23 Score=180.26 Aligned_cols=206 Identities=20% Similarity=0.303 Sum_probs=168.2
Q ss_pred eeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-------ceeeeccCccCCeEEEEECCC-CcEEEEee
Q 018784 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDAN-ALFSASGS 80 (350)
Q Consensus 9 ~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~-------~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s 80 (350)
.+.++||++.-++++|++..+. .|++|+.|+++.+||+... .+...+.+|+..|.-++|++. ..+|++.+
T Consensus 170 dl~L~gH~~eg~glsWn~~~~g--~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 170 DLRLKGHEKEGYGLSWNRQQEG--TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred ceEEEeecccccccccccccce--eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec
Confidence 3467999998889999986543 7899999999999997532 235678999999999999874 56889999
Q ss_pred CCCeEEEeeCCC--CCeeee-eeccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCC
Q 018784 81 ADFTAKLWDALT--GDEKHS-FEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS 156 (350)
Q Consensus 81 ~Dg~v~vWd~~~--~~~~~~-~~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 156 (350)
.|+.+.|||+.+ .+.... -.|...|.|++|+| ++.+|||||.|++|++||+++...+......|...|..+.|+|.
T Consensus 248 dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh 327 (422)
T KOG0264|consen 248 DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPH 327 (422)
T ss_pred CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCC
Confidence 999999999984 333333 36899999999999 56778999999999999999888888888899999999999999
Q ss_pred CCcEEEEEeCCCeEEEEECCCC-cee------------Eee--cCCCCeEEEEEecCCcEEEE--EcCCcEEEEECC
Q 018784 157 DQTILSSCTDSGGVRLWDARSG-KIV------------QTL--ETKSPVTSAEVSRDGRYITT--ADGSSVKFWDAN 216 (350)
Q Consensus 157 ~~~~~~s~~~dg~i~iwd~~~~-~~~------------~~~--~~~~~v~~~~~~~~~~~l~~--~~~~~i~vwd~~ 216 (350)
...++++++.|+.+.+||+..- +.. ..+ .+...|....|+|+.-++.+ ++|+.+.||.+.
T Consensus 328 ~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 328 NETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999999999999998642 110 111 12356888899998876543 468999999875
No 127
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=2.1e-22 Score=183.09 Aligned_cols=306 Identities=19% Similarity=0.241 Sum_probs=223.8
Q ss_pred eeEEEecccCCCccEEEEEeCCCCeeEeeCCCCce---eeeccCccCCeEEEEECC------------CCcEEEEeeCCC
Q 018784 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW---IGTFEGHKGAVWSCCLDA------------NALFSASGSADF 83 (350)
Q Consensus 19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~---~~~l~gH~~~V~~v~~~~------------~~~~l~s~s~Dg 83 (350)
-.++.|++ .-.-|..--+|..+.|||+.+-.. ...+--|+..||.+..-| .+ -|+|+|.|+
T Consensus 327 ~IA~~Fde---t~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~ 402 (1080)
T KOG1408|consen 327 AIACQFDE---TTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDG 402 (1080)
T ss_pred eeEEEecC---CCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCcc-ceeEecCCC
Confidence 34666776 334677888999999999865322 235556999998875432 22 468999999
Q ss_pred eEEEeeCCCCCe--e-e--ee---------------------------------eccccEeEEEEcCCCCeEEEeeCCCe
Q 018784 84 TAKLWDALTGDE--K-H--SF---------------------------------EHKHIVRACAFSEDTHLLLTGGFEKI 125 (350)
Q Consensus 84 ~v~vWd~~~~~~--~-~--~~---------------------------------~h~~~V~~~~~~~~~~~l~sg~~d~~ 125 (350)
+||+||+..+.. . + .+ ..+..+++++.+|++++||+|..-|.
T Consensus 403 TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gn 482 (1080)
T KOG1408|consen 403 TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGN 482 (1080)
T ss_pred cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCc
Confidence 999999865211 0 0 00 12346899999999999999999999
Q ss_pred EEEEECCCCCCCCeeecCCCCcEEEEEEeCC--CCcEEEEEeCCCeEEEEECCC-CceeEeecC-CCCeEEEEEecCC--
Q 018784 126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHS--DQTILSSCTDSGGVRLWDARS-GKIVQTLET-KSPVTSAEVSRDG-- 199 (350)
Q Consensus 126 v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~s~~~dg~i~iwd~~~-~~~~~~~~~-~~~v~~~~~~~~~-- 199 (350)
++||++..-... .....|...|.++.|+.+ ..+++++++.|+-|.++|+.. -.++.++.. ...|+++.|..+|
T Consensus 483 lrVy~Lq~l~~~-~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln 561 (1080)
T KOG1408|consen 483 LRVYDLQELEYT-CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLN 561 (1080)
T ss_pred eEEEEehhhhhh-hheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCc
Confidence 999999654332 234678899999999866 467899999999999999954 456677765 5689999998766
Q ss_pred -cEEEEEcCCcEEEEECCCcceeeeeec------CCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC---C
Q 018784 200 -RYITTADGSSVKFWDANHFGLVKGYNM------PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG---H 269 (350)
Q Consensus 200 -~~l~~~~~~~i~vwd~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~---h 269 (350)
+++.++.|+.|.+--.++....+.+.- ....+...+.| .-++++++++|+.|+|||+.+|++...+++ |
T Consensus 562 ~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp-~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~ 640 (1080)
T KOG1408|consen 562 RKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP-TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH 640 (1080)
T ss_pred eEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCC-CcceEEEEecccceEEEeccccceeeeecccccC
Confidence 567777776654322221111111111 11122333444 357899999999999999999999988864 6
Q ss_pred CcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeee
Q 018784 270 HGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKI 330 (350)
Q Consensus 270 ~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 330 (350)
.+..--+..-|.|-|+|+.+.|.++.++|....+......||...++|....+.=.+.-.+
T Consensus 641 eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISv 701 (1080)
T KOG1408|consen 641 EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISV 701 (1080)
T ss_pred CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheee
Confidence 6778889999999999999999999999999999888889999999887666654444433
No 128
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.8e-22 Score=174.03 Aligned_cols=278 Identities=15% Similarity=0.233 Sum_probs=207.2
Q ss_pred CCceeEEEecccCCCccEEEEEeCCCCeeEeeCC--CCceeeeccCccCCeEEEEECCCCc-EEEEeeCCCeEEEeeCCC
Q 018784 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE--TGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDALT 92 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~--~~~~~~~l~gH~~~V~~v~~~~~~~-~l~s~s~Dg~v~vWd~~~ 92 (350)
.++|++|.|+|..| +|++|+.|++++||.+. +...+..+.=-.-+|.+++|.|+|. .++++|.-.-...||+.+
T Consensus 213 ~~~I~sv~FHp~~p---lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP---LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCc---eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 45899999998555 99999999999998864 3445555554557899999999998 899999999999999988
Q ss_pred CCeeee---eec-cccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784 93 GDEKHS---FEH-KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168 (350)
Q Consensus 93 ~~~~~~---~~h-~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg 168 (350)
.+.... ..+ ...+.....+|++++|+..|..|.|.+--..+.+..... .-.+.+..++|+.++ +.++.++.+|
T Consensus 290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~--KieG~v~~~~fsSds-k~l~~~~~~G 366 (514)
T KOG2055|consen 290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF--KIEGVVSDFTFSSDS-KELLASGGTG 366 (514)
T ss_pred cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee--eeccEEeeEEEecCC-cEEEEEcCCc
Confidence 763322 122 235667778999999999999999999877655443322 236789999999655 5555556679
Q ss_pred eEEEEECCCCceeEeecCCCCe--EEEEEecCCcEEEEEcC-CcEEEEECCC------cceeeeee-cCCCCceeEecCC
Q 018784 169 GVRLWDARSGKIVQTLETKSPV--TSAEVSRDGRYITTADG-SSVKFWDANH------FGLVKGYN-MPCNTESASLEPK 238 (350)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-~~i~vwd~~~------~~~~~~~~-~~~~~~~~~~~~~ 238 (350)
.|.+||+++..+++.+...+.+ ++++.++++.|++++++ |.|.|||..+ .++++.+. +......+.|++
T Consensus 367 eV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~- 445 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH- 445 (514)
T ss_pred eEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc-
Confidence 9999999999999988766554 56777899999998875 7899999653 23333221 122234455655
Q ss_pred CCcEEEEecC--CCeEEEEEcccCeeEEeec---CCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 239 LGNIFIAGGE--DMWVHVFDFHTGEQIGCNK---GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 239 ~~~~l~sg~~--d~~i~v~d~~~~~~~~~~~---~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
+.++|+.+|. +..+++-.+.+......+. .--+.|+||+|||.+.+||.|-.+|.|.+|.+.
T Consensus 446 d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred chhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 5788887775 5568887776655443332 233568999999999999999999999999863
No 129
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.2e-23 Score=167.35 Aligned_cols=204 Identities=24% Similarity=0.388 Sum_probs=162.5
Q ss_pred EeeccCCceeEEEec-ccCCCccEEEEEeCCCCeeEeeCCCCceee--eccCccCCeEEEEECCC--CcEEEEeeCCCeE
Q 018784 11 VCHGHSRPVVDLFYS-PITPDGFFLVSASKDSSPMLRNGETGDWIG--TFEGHKGAVWSCCLDAN--ALFSASGSADFTA 85 (350)
Q Consensus 11 ~~~gH~~~v~~~~~~-~~s~dg~~lasgs~d~~v~iw~~~~~~~~~--~l~gH~~~V~~v~~~~~--~~~l~s~s~Dg~v 85 (350)
.++||.+||+.++|- | .-|.+||++|.|++|.||.-+.|++.+ ....|+.+|++++|.|. |.+||.++.||.|
T Consensus 51 ~L~Gh~GPVwqv~wahP--k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~v 128 (299)
T KOG1332|consen 51 ELTGHSGPVWKVAWAHP--KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV 128 (299)
T ss_pred EecCCCCCeeEEeeccc--ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcE
Confidence 368999999999984 3 258899999999999999999887754 55689999999999875 6799999999999
Q ss_pred EEeeCCCC-C---eeeeeeccccEeEEEEcCC---C-----------CeEEEeeCCCeEEEEECCCCCCCCe-eecCCCC
Q 018784 86 KLWDALTG-D---EKHSFEHKHIVRACAFSED---T-----------HLLLTGGFEKILRIFDLNRPDAPPR-EVGNSSG 146 (350)
Q Consensus 86 ~vWd~~~~-~---~~~~~~h~~~V~~~~~~~~---~-----------~~l~sg~~d~~v~vwd~~~~~~~~~-~~~~~~~ 146 (350)
.|.+.... . .+....|+-.|+++.|.|- | +.|++|+-|..|+||+.....-... .+..|..
T Consensus 129 svl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~d 208 (299)
T KOG1332|consen 129 SVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKD 208 (299)
T ss_pred EEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcch
Confidence 99987544 1 2334468889999999886 4 5699999999999999876543333 3678999
Q ss_pred cEEEEEEeCCC---CcEEEEEeCCCeEEEEECCCCceeE--ee--cCCCCeEEEEEecCCcEEEEE-cCCcEEEEECC
Q 018784 147 SIRTVAWLHSD---QTILSSCTDSGGVRLWDARSGKIVQ--TL--ETKSPVTSAEVSRDGRYITTA-DGSSVKFWDAN 216 (350)
Q Consensus 147 ~v~~~~~~~~~---~~~~~s~~~dg~i~iwd~~~~~~~~--~~--~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~ 216 (350)
.|+.++|.|.- ...+++|+.||+|.||-.+...... ++ ..+..+..+.|+..|.+|+.+ .++.|.+|--.
T Consensus 209 wVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 209 WVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred hhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 99999999864 4579999999999999876321111 11 135678999999999999766 46789999643
No 130
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=7e-22 Score=184.33 Aligned_cols=272 Identities=17% Similarity=0.246 Sum_probs=211.6
Q ss_pred ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~-~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~ 92 (350)
+|+..-+.|+|.| +|.+|.+++.|+.|++|+..+- +...++.-|...|.+++. ....|++|+.+++|.++....
T Consensus 11 aht~G~t~i~~d~---~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDP---DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcC---CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCC
Confidence 7999999999886 9999999999999999996554 444455557788877765 445889999999999999988
Q ss_pred CCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784 93 GDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (350)
Q Consensus 93 ~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~ 171 (350)
++.-..+ .-+-+++.++|+-+|+++|.||.|-.|++-++.+.... .....|.++|.++.|.| .+.++++.+-||+|+
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~-~~lrgh~apVl~l~~~p-~~~fLAvss~dG~v~ 163 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE-KVLRGHDAPVLQLSYDP-KGNFLAVSSCDGKVQ 163 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchh-eeecccCCceeeeeEcC-CCCEEEEEecCceEE
Confidence 7765444 34557899999999999999999999999999876554 34467899999999875 556778888899999
Q ss_pred EEECCCCceeEeecC---------CCCeEEEEEecC-CcEEEEEcCCcEEEEECCCcceeeeeecC---CCCceeEecCC
Q 018784 172 LWDARSGKIVQTLET---------KSPVTSAEVSRD-GRYITTADGSSVKFWDANHFGLVKGYNMP---CNTESASLEPK 238 (350)
Q Consensus 172 iwd~~~~~~~~~~~~---------~~~v~~~~~~~~-~~~l~~~~~~~i~vwd~~~~~~~~~~~~~---~~~~~~~~~~~ 238 (350)
+||+.++.+..++.. ...+..++|+|+ |++++...++.|++|+..++.....+... .....+.+.|.
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn 243 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN 243 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence 999999987766643 234677899998 67888888999999999887765555432 22445566764
Q ss_pred CCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEe
Q 018784 239 LGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297 (350)
Q Consensus 239 ~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw 297 (350)
|.|||+++.||.|.|||..+-+. ......|.+++|.|+...+-.-..-|...+|
T Consensus 244 -G~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 244 -GKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred -CcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 99999999999999999987111 2234579999999998765443334444444
No 131
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.1e-24 Score=196.27 Aligned_cols=194 Identities=22% Similarity=0.404 Sum_probs=170.5
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~ 91 (350)
+.||+.+|-++.|++ +-.+|+.|+.||+|++||++..+.+++|.||...+..|.|+|-+.++|+|+.|+.+++||..
T Consensus 66 ~~~hespIeSl~f~~---~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~R 142 (825)
T KOG0267|consen 66 LTGHESPIESLTFDT---SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIR 142 (825)
T ss_pred eeccCCcceeeecCc---chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhh
Confidence 379999999999996 77899999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784 92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (350)
Q Consensus 92 ~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i 170 (350)
...+.+++ .|...|..+.|+|+|.++++|+.|.+++|||+..++.. ..+..|.+.+..+.| ++...++++|+.|+++
T Consensus 143 k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~-~ef~~~e~~v~sle~-hp~e~Lla~Gs~d~tv 220 (825)
T KOG0267|consen 143 KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS-KEFKSHEGKVQSLEF-HPLEVLLAPGSSDRTV 220 (825)
T ss_pred ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc-ccccccccccccccc-CchhhhhccCCCCcee
Confidence 66666666 48889999999999999999999999999999765543 344668888999985 5677889999999999
Q ss_pred EEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEEcCCcE
Q 018784 171 RLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADGSSV 210 (350)
Q Consensus 171 ~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~~~i 210 (350)
++||+++.+.+..... ...+.+..|+|+++.+.++..-.+
T Consensus 221 ~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 221 RFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred eeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhh
Confidence 9999999888877664 468999999999998887754333
No 132
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=5.1e-22 Score=177.38 Aligned_cols=281 Identities=21% Similarity=0.265 Sum_probs=202.3
Q ss_pred eeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCc--EEEEeeCCCeEE
Q 018784 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL--FSASGSADFTAK 86 (350)
Q Consensus 9 ~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~--~l~s~s~Dg~v~ 86 (350)
.++++||++.|.++...| .|..||+||.||++|||.+.+|+|++++. ..+.|.+|+|+|.+. +||.+ ....+-
T Consensus 393 ~lvyrGHtg~Vr~iSvdp---~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ 467 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDP---SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VGECVL 467 (733)
T ss_pred eeeEeccCCeEEEEEecC---CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEE-ecCceE
Confidence 456799999999997775 89999999999999999999999998765 335799999988654 34433 222244
Q ss_pred EeeCCCC---------------------------------C-----eeeeeeccccEeEEEEcCCCCeEEEeeC---CCe
Q 018784 87 LWDALTG---------------------------------D-----EKHSFEHKHIVRACAFSEDTHLLLTGGF---EKI 125 (350)
Q Consensus 87 vWd~~~~---------------------------------~-----~~~~~~h~~~V~~~~~~~~~~~l~sg~~---d~~ 125 (350)
|-+..-| + ....+.|...|+.+.||..|.+|++... ...
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~ 547 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKS 547 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcce
Confidence 4332111 0 1123458889999999999999998754 467
Q ss_pred EEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCc-EEE
Q 018784 126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGR-YIT 203 (350)
Q Consensus 126 v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~-~l~ 203 (350)
|.|.++.+.... .-+....+.+..+.|.|....+++ ++. ..|++||+-.++.+..+... ..+.+++++|.|. +++
T Consensus 548 VliHQLSK~~sQ-~PF~kskG~vq~v~FHPs~p~lfV-aTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 548 VLIHQLSKRKSQ-SPFRKSKGLVQRVKFHPSKPYLFV-ATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred EEEEeccccccc-CchhhcCCceeEEEecCCCceEEE-Eec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 889998754322 223345678999998766555554 444 58999999887776666554 4577899999885 455
Q ss_pred EEcCCcEEEEECCCc-ceeeeeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcc------cC---eeEEeecCCCcC
Q 018784 204 TADGSSVKFWDANHF-GLVKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFH------TG---EQIGCNKGHHGP 272 (350)
Q Consensus 204 ~~~~~~i~vwd~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~------~~---~~~~~~~~h~~~ 272 (350)
++.++.+..+|+.-. ++.+++..+.. ...+.++.. -.+|++|+.|+++.||.-. .. -++..+.+|...
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r-yPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~ 703 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR-YPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT 703 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc-cceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceee
Confidence 666889999998543 34444443332 334455543 3689999999999988521 11 134567899876
Q ss_pred ----EEEEEEcCCCCEEEEecCCCcEEEec
Q 018784 273 ----VHCVRFSPGGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 273 ----v~~l~~sp~~~~lasgs~Dg~v~vw~ 298 (350)
|..+.|+|...+|+|++.||+|++|.
T Consensus 704 ~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 704 NDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred cccceEeecccCCCceEEecCCCceEEeeC
Confidence 99999999999999999999999993
No 133
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.4e-23 Score=184.76 Aligned_cols=258 Identities=21% Similarity=0.266 Sum_probs=181.6
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC--------CCceeeeccCccCCeEEEEECCCCcEEEEeeCCC
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE--------TGDWIGTFEGHKGAVWSCCLDANALFSASGSADF 83 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~--------~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg 83 (350)
++-|.+-|+++.|.|.+| .|++++.|+++++|+++ ..+++.+|.+|.++|.|+++..++..+.|||.||
T Consensus 290 l~s~~d~ir~l~~~~sep---~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEP---VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred eecchhhhhhhhcCCCCC---eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 478999999999999777 59999999999999983 2467889999999999999999999999999999
Q ss_pred eEEEeeCCCCC------e-----eeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEE
Q 018784 84 TAKLWDALTGD------E-----KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVA 152 (350)
Q Consensus 84 ~v~vWd~~~~~------~-----~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~ 152 (350)
+|+.|++.... . -..+.|...|+.+++|+....|++++.||+++.|+...............+...++.
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd 446 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVD 446 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEe
Confidence 99999654221 0 112369999999999999999999999999999987644331122222334455666
Q ss_pred EeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCce
Q 018784 153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTES 232 (350)
Q Consensus 153 ~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~ 232 (350)
+......+.++...-+.--+.++..+..+..+... .....+.+ .....
T Consensus 447 ~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~------------------~~~~~~~~--------------~~in~ 494 (577)
T KOG0642|consen 447 RTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS------------------ASPGPRRY--------------PQINK 494 (577)
T ss_pred eccchhHhhhhhcccccccchhhhhhhheeecccc------------------CCCccccc--------------Cccce
Confidence 55443333332222122222222222211111110 00000000 00111
Q ss_pred eEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784 233 ASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305 (350)
Q Consensus 233 ~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~ 305 (350)
+... +...+.+++..|+.|+++|..++..++....|...++++++-|+|.+|++|+.|+.|++|.+......
T Consensus 495 vVs~-~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 495 VVSH-PTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred EEec-CCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 1111 23467788889999999999999999999999999999999999999999999999999998655443
No 134
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.91 E-value=5e-22 Score=165.54 Aligned_cols=263 Identities=23% Similarity=0.322 Sum_probs=195.4
Q ss_pred cCCCccEEEEEeCCCCeeEeeCCC-----C--ce-e----eeccCc-cCCeEEEEE-------CCCCcEEEEeeCCCeEE
Q 018784 27 ITPDGFFLVSASKDSSPMLRNGET-----G--DW-I----GTFEGH-KGAVWSCCL-------DANALFSASGSADFTAK 86 (350)
Q Consensus 27 ~s~dg~~lasgs~d~~v~iw~~~~-----~--~~-~----~~l~gH-~~~V~~v~~-------~~~~~~l~s~s~Dg~v~ 86 (350)
++|||..+++-+.|..+++|++-. . .. . .+++-- ...|+..+| .|+..++|+.+.|.-|.
T Consensus 57 WSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh 136 (406)
T KOG2919|consen 57 WSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIH 136 (406)
T ss_pred eCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCcee
Confidence 567999999999999999999531 1 11 1 111111 134555555 36778999999999999
Q ss_pred EeeCCCCCeeeee---ecccc---EeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe--e-----ecCCCCcEEEEEE
Q 018784 87 LWDALTGDEKHSF---EHKHI---VRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR--E-----VGNSSGSIRTVAW 153 (350)
Q Consensus 87 vWd~~~~~~~~~~---~h~~~---V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~--~-----~~~~~~~v~~~~~ 153 (350)
+||..+++.+.++ .|... -.+++|+|||.+|++ +..+.|++||+..+..... . .....+.+.+++|
T Consensus 137 ~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~ 215 (406)
T KOG2919|consen 137 LWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAF 215 (406)
T ss_pred eeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeec
Confidence 9999999887765 45443 458999999999885 4578999999965432211 1 1223667888899
Q ss_pred eCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEEc--CCcEEEEECCCccee-eeeecCC-
Q 018784 154 LHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGLV-KGYNMPC- 228 (350)
Q Consensus 154 ~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~~~~~-~~~~~~~- 228 (350)
+|.+..+++.++.-..+-|+.-..++++..+.. .+.|+.++|.++|+.|.++. +..|..||+|..+.+ ..+.-+.
T Consensus 216 sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~ 295 (406)
T KOG2919|consen 216 SPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVG 295 (406)
T ss_pred cCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhcc
Confidence 998888999998888888877667777777664 57899999999998877664 568999999976532 2222111
Q ss_pred --C-CceeEecCCCCcEEEEecCCCeEEEEEccc-CeeEEeecCCCcCEEEEEEcCCCCEEEEecCC
Q 018784 229 --N-TESASLEPKLGNIFIAGGEDMWVHVFDFHT-GEQIGCNKGHHGPVHCVRFSPGGESYASGSED 291 (350)
Q Consensus 229 --~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~-~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~D 291 (350)
+ .....+.+ .+++|++|+.||.|++||+++ |+.+..+..|...++.++++|--+++|++|-.
T Consensus 296 ~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 296 DTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 1 22233333 589999999999999999998 78788888899999999999999989887754
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.5e-21 Score=175.23 Aligned_cols=278 Identities=17% Similarity=0.206 Sum_probs=217.2
Q ss_pred CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCce-eeeccCccC-CeEEEEECCCCcEEEEeeCCCeEEEeeCCCC
Q 018784 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW-IGTFEGHKG-AVWSCCLDANALFSASGSADFTAKLWDALTG 93 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~-~~~l~gH~~-~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~ 93 (350)
-.+|.+++|+. .++.||.+-.||.|.||++...-+ ...+.||.+ +|.+++|. ++..|+|.+.+|.|.-||+.+.
T Consensus 25 Ps~I~slA~s~---kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 25 PSEIVSLAYSH---KSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred ccceEEEEEec---cCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccC
Confidence 35799999986 666899999999999999877543 457788764 69999999 5556678899999999999999
Q ss_pred Ceeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe-eecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784 94 DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR-EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (350)
Q Consensus 94 ~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~ 171 (350)
+++..+. ..+.+++++.+|.+..++.|+.||.+..++......... .+...++.+.++.|.+ +...+++|+.||.|+
T Consensus 101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIR 179 (691)
T ss_pred ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecC-CccEEEecccCceEE
Confidence 9888775 456899999999999999999999888888764433222 2344568999999975 455577889999999
Q ss_pred EEECCCCceeEeecC---------CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcE
Q 018784 172 LWDARSGKIVQTLET---------KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNI 242 (350)
Q Consensus 172 iwd~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (350)
+||..++..+..... ..-+.++.+-.++.++++.+.|.|.+||...+.+++.+..+.....+....+++++
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~ 259 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDR 259 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCe
Confidence 999999877662221 12367777888888777777899999999998888877766555545445556789
Q ss_pred EEEecCCCeEEEEEcccCee----EEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 243 FIAGGEDMWVHVFDFHTGEQ----IGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 243 l~sg~~d~~i~v~d~~~~~~----~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
+.+++-|+.|.-|...+... ......|...|.+++..++ .+.+|+.|..+.+--..
T Consensus 260 vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 260 VFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSR 319 (691)
T ss_pred EEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcccc
Confidence 99999999998888766533 2234578888999999877 89999999988876543
No 136
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.6e-22 Score=164.95 Aligned_cols=212 Identities=23% Similarity=0.349 Sum_probs=152.2
Q ss_pred eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee--eeee---ccccEeEEEEcCCCCeE-EEeeCCCeEE
Q 018784 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK--HSFE---HKHIVRACAFSEDTHLL-LTGGFEKILR 127 (350)
Q Consensus 54 ~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~--~~~~---h~~~V~~~~~~~~~~~l-~sg~~d~~v~ 127 (350)
+.+|+||.+.|.+++|+.||+.|||++.|++||+|++.....+ ..+. .-+..+.+.|+||..-+ ++.-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3478999999999999999999999999999999998643211 1110 11235778999998755 4555677899
Q ss_pred EEECCCCCC---CCe--------eecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEE
Q 018784 128 IFDLNRPDA---PPR--------EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEV 195 (350)
Q Consensus 128 vwd~~~~~~---~~~--------~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~ 195 (350)
+|.+.+.+. +.. ....|...+..+.. ..+..++++|+.|.+|.+|+++ |+.+..+..+ ..-...++
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi-A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI-AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEee-cCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 998754321 110 11223344555543 3567889999999999999999 9988888764 34556789
Q ss_pred ecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEE
Q 018784 196 SRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVH 274 (350)
Q Consensus 196 ~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~ 274 (350)
+|+|++++++. --.|++|.+- . +.||++ .+-..+..++||+..|.
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~-----f------------------------~kdG~f-----qev~rvf~LkGH~saV~ 282 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPI-----F------------------------TKDGTF-----QEVKRVFSLKGHQSAVL 282 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEE-----e------------------------ccCcch-----hhhhhhheeccchhhee
Confidence 99999987654 4468888641 0 011211 11123446789999999
Q ss_pred EEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784 275 CVRFSPGGESYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 275 ~l~~sp~~~~lasgs~Dg~v~vw~~~~ 301 (350)
.++|+|+.+.++|.|.||.++|||++-
T Consensus 283 ~~aFsn~S~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 283 AAAFSNSSTRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred eeeeCCCcceeEEEecCCcEEEeeccc
Confidence 999999999999999999999999863
No 137
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.6e-22 Score=168.32 Aligned_cols=268 Identities=15% Similarity=0.188 Sum_probs=203.2
Q ss_pred cEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECC--CCcEEEEeeCCCeEEEeeCCCCCeeeee---ecc-ccE
Q 018784 32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA--NALFSASGSADFTAKLWDALTGDEKHSF---EHK-HIV 105 (350)
Q Consensus 32 ~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~--~~~~l~s~s~Dg~v~vWd~~~~~~~~~~---~h~-~~V 105 (350)
..+|++-+.++++|||..+++.+..+++|...+..+.|.. .+..+.|++.||+||+||+........+ .++ .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 3588888899999999999999999999999999998865 5678899999999999999776644433 233 466
Q ss_pred eEEEEcCCCCeEEEee----CCCeEEEEECCCCCC-CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC--
Q 018784 106 RACAFSEDTHLLLTGG----FEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-- 178 (350)
Q Consensus 106 ~~~~~~~~~~~l~sg~----~d~~v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~-- 178 (350)
.+++....++++++|. .|-.|.+||++..++ .......|..-|+++.|.|.+..++++|+-||-|.++|++..
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E 200 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE 200 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc
Confidence 7888887888888874 467899999987666 344557789999999999999999999999999999999754
Q ss_pred --ceeEeecCCCCeEEEEEecCC--cEEEEEcCCcEEEEECCCcceeeeeecCCC-----------Ccee-EecCCCCcE
Q 018784 179 --KIVQTLETKSPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNMPCN-----------TESA-SLEPKLGNI 242 (350)
Q Consensus 179 --~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~ 242 (350)
..+..+...+.|..+.|..++ +++..+...+..+|+++...+...+..+.. ...+ ...+.+...
T Consensus 201 eDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~ 280 (376)
T KOG1188|consen 201 EDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDT 280 (376)
T ss_pred hhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcce
Confidence 245566677889999999888 777777788999999988765544433211 0111 122333445
Q ss_pred EEEecC-CCeEEEEEcc---c---CeeEEeecC-CCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784 243 FIAGGE-DMWVHVFDFH---T---GEQIGCNKG-HHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (350)
Q Consensus 243 l~sg~~-d~~i~v~d~~---~---~~~~~~~~~-h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~ 299 (350)
++.++. -++..++-+. + ++.+..+++ |..-|.++.|...+.++.||++||.+.+|..
T Consensus 281 ~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 281 CALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred EEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 554444 4555554332 2 334556665 6777899999888899999999999999985
No 138
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=5.5e-22 Score=172.46 Aligned_cols=231 Identities=17% Similarity=0.218 Sum_probs=179.1
Q ss_pred CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee
Q 018784 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK 96 (350)
Q Consensus 17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~ 96 (350)
++|.+++-+ |+|.+|+.|+--+.+.||.+.+|+.+..+.+|-.+|+++.|+.|+.+++|||.||.|.+|.+..
T Consensus 82 g~v~al~s~---n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~---- 154 (476)
T KOG0646|consen 82 GPVHALASS---NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD---- 154 (476)
T ss_pred cceeeeecC---CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe----
Confidence 478888555 5999999988999999999999999999999999999999999999999999999999999632
Q ss_pred eeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCC-CCcEEEEEeCCCeEEEEEC
Q 018784 97 HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-DQTILSSCTDSGGVRLWDA 175 (350)
Q Consensus 97 ~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~dg~i~iwd~ 175 (350)
++++..|+. ..+......|.-+|+.+..... ....+++++.|+++++||+
T Consensus 155 --------------------lv~a~~~~~---------~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 155 --------------------LVSADNDHS---------VKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred --------------------ecccccCCC---------ccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence 222333321 1122334556667777765543 3456888999999999999
Q ss_pred CCCceeEeecCCCCeEEEEEecCCcEEEE-EcCCcEEEEECCCcc----------------eeeeeecCCC--CceeEec
Q 018784 176 RSGKIVQTLETKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFG----------------LVKGYNMPCN--TESASLE 236 (350)
Q Consensus 176 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~----------------~~~~~~~~~~--~~~~~~~ 236 (350)
..+..+.++..+.++.++.++|-++.+.. +.+|.|.+.++.+.. .++.+..+.+ ..++..-
T Consensus 206 S~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLai 285 (476)
T KOG0646|consen 206 SLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAI 285 (476)
T ss_pred ccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEE
Confidence 99999999999999999999998876655 467888887765432 1122222333 2333333
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCC
Q 018784 237 PKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE 283 (350)
Q Consensus 237 ~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~ 283 (350)
..++.+|++|+.||+++|||+.+.++++++....++|+-+.+.|-.+
T Consensus 286 s~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 286 STDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLER 332 (476)
T ss_pred ecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecccc
Confidence 45799999999999999999999999988887888999999966533
No 139
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.90 E-value=2.5e-22 Score=171.30 Aligned_cols=207 Identities=23% Similarity=0.348 Sum_probs=164.0
Q ss_pred ceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-------ceeeeccCccCCeEEEEECCCC-cEEEEe
Q 018784 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDANA-LFSASG 79 (350)
Q Consensus 8 ~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~-------~~~~~l~gH~~~V~~v~~~~~~-~~l~s~ 79 (350)
.|++ .||+++|.+++|+|+ +...+||||.|.+|.||++-.+ +++..|.||+..|-.++|+|.. ..|+|+
T Consensus 74 ~P~v-~GHt~~vLDi~w~Pf--nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsa 150 (472)
T KOG0303|consen 74 YPLV-CGHTAPVLDIDWCPF--NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSA 150 (472)
T ss_pred CCCc-cCccccccccccCcc--CCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhc
Confidence 4553 799999999999994 5568999999999999996432 5577899999999999999864 688999
Q ss_pred eCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCC-cEEEEEEeCCCC
Q 018784 80 SADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG-SIRTVAWLHSDQ 158 (350)
Q Consensus 80 s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~ 158 (350)
|.|.+|.+||+.+++...++.|...|+++.|+.+|.+|+|.+.|+.|||||..+++..... ..|.+ ...-+.|... +
T Consensus 151 g~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~heG~k~~Raifl~~-g 228 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAHEGAKPARAIFLAS-G 228 (472)
T ss_pred cCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccccCCCcceeEEecc-C
Confidence 9999999999999999999999999999999999999999999999999999876654443 33333 3333445544 3
Q ss_pred cEEEEE---eCCCeEEEEECCCCc---eeEeecCCCCeEEEEEecCCcEEEE-E-cCCcEEEEECCCcc
Q 018784 159 TILSSC---TDSGGVRLWDARSGK---IVQTLETKSPVTSAEVSRDGRYITT-A-DGSSVKFWDANHFG 219 (350)
Q Consensus 159 ~~~~s~---~~dg~i~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~-~-~~~~i~vwd~~~~~ 219 (350)
.++.+| ..++++-+||..+-+ .+.++...+.|.--.+.++.+++.. + .|+.||+|.+....
T Consensus 229 ~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 229 KIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 466555 355789999976543 4556667778877778888876543 3 57899999986644
No 140
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.9e-21 Score=175.63 Aligned_cols=250 Identities=17% Similarity=0.223 Sum_probs=189.1
Q ss_pred ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee--ccccEeEE
Q 018784 31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRAC 108 (350)
Q Consensus 31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~--h~~~V~~~ 108 (350)
...||.|.. ..+.+|+..+++.....+-+.+.|+++.|+++|.+||.|-.+|.|.|||..+.+....+. |...|-++
T Consensus 188 ~n~laValg-~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~l 266 (484)
T KOG0305|consen 188 ANVLAVALG-QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSL 266 (484)
T ss_pred CCeEEEEec-ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEE
Confidence 346676654 678999999998766555568999999999999999999999999999998887766653 78899999
Q ss_pred EEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec-CC
Q 018784 109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TK 187 (350)
Q Consensus 109 ~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~ 187 (350)
+|. ...+.+|+.|+.|..+|+...+.......+|...|+.+.|++ ++..+++|+.|+.+.|||....+++..+. +.
T Consensus 267 aW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~ 343 (484)
T KOG0305|consen 267 AWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHT 343 (484)
T ss_pred ecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccc
Confidence 999 667899999999999999876655555677899999999985 67789999999999999997766665554 45
Q ss_pred CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEec--CCCeEEEEEcccCeeEEe
Q 018784 188 SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGG--EDMWVHVFDFHTGEQIGC 265 (350)
Q Consensus 188 ~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~--~d~~i~v~d~~~~~~~~~ 265 (350)
..|..++|+|-. ..+||+|+ .|+.|++||..+|..+..
T Consensus 344 aAVKA~awcP~q----------------------------------------~~lLAsGGGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 344 AAVKALAWCPWQ----------------------------------------SGLLATGGGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred eeeeEeeeCCCc----------------------------------------cCceEEcCCCcccEEEEEEcCCCcEecc
Confidence 678888888731 23334332 366666666666666544
Q ss_pred ecCCCcCEEEEEEcCCCCEEEE--ecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccch
Q 018784 266 NKGHHGPVHCVRFSPGGESYAS--GSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGK 340 (350)
Q Consensus 266 ~~~h~~~v~~l~~sp~~~~las--gs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~ 340 (350)
.. -...|.+|.|++..+-|++ |-.+..|.||++...+..... ..|+.++.-+.++|||.
T Consensus 384 vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l---------------~gH~~RVl~la~SPdg~ 444 (484)
T KOG0305|consen 384 VD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL---------------LGHTSRVLYLALSPDGE 444 (484)
T ss_pred cc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee---------------cCCcceeEEEEECCCCC
Confidence 43 2345999999998755544 556789999999775544444 34455566666666654
No 141
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=1.6e-22 Score=177.17 Aligned_cols=243 Identities=20% Similarity=0.328 Sum_probs=193.6
Q ss_pred CccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe---ee---eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECC
Q 018784 59 GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE---KH---SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132 (350)
Q Consensus 59 gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~---~~---~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~ 132 (350)
.|..-|.++.++...+.+.||| .|.|||||+..... +. .++..+.+++|.+.|||..|++|+.-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 4878888999998889988865 58899999864422 22 23456789999999999999999999999999998
Q ss_pred CCCCCCeeecCC-CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEE-EEEcCCc
Q 018784 133 RPDAPPREVGNS-SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYI-TTADGSS 209 (350)
Q Consensus 133 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~~~~~ 209 (350)
.++...+..... ....++++.+ +|.+++.+|-.||.|.|||+++...++.++.+ ..+.++.++++|.-| +.+-|.+
T Consensus 496 apTprikaeltssapaCyALa~s-pDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 776554432222 2234555655 46667777778899999999999999999865 578899999999655 5667999
Q ss_pred EEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEec
Q 018784 210 VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS 289 (350)
Q Consensus 210 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs 289 (350)
||.||+|..+.+..+.+.....++..+| .+..+++|=..+.+.|...... .-..+.-|..-|.++.|.+.|++++|.+
T Consensus 575 vRcWDlregrqlqqhdF~SQIfSLg~cP-~~dWlavGMens~vevlh~skp-~kyqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred eeehhhhhhhhhhhhhhhhhheecccCC-CccceeeecccCcEEEEecCCc-cceeecccccEEEEEEecccCceeeecC
Confidence 9999999998888777777766776676 4789999999998888776433 3345667899999999999999999999
Q ss_pred CCCcEEEecCCCCCcc
Q 018784 290 EDGTIRIWQTNPPNHE 305 (350)
Q Consensus 290 ~Dg~v~vw~~~~~~~~ 305 (350)
.|..+..|.......+
T Consensus 653 kDnlLnawrtPyGasi 668 (705)
T KOG0639|consen 653 KDNLLNAWRTPYGASI 668 (705)
T ss_pred chhhhhhccCccccce
Confidence 9999999998765543
No 142
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=3.5e-20 Score=162.71 Aligned_cols=274 Identities=19% Similarity=0.259 Sum_probs=204.3
Q ss_pred CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceee---eccCcc-CCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG---TFEGHK-GAVWSCCLDANALFSASGSADFTAKLWDAL 91 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~---~l~gH~-~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~ 91 (350)
.+.|..+.|+|..|. ++++.+. +.+..|..+.+.+.+ .+++++ .-|.|++|.++|.. +||.++|.|-||+..
T Consensus 200 ne~v~~a~FHPtd~n--liit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 200 NEVVFLATFHPTDPN--LIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDV-ITGDSGGNILIWSKG 275 (626)
T ss_pred cceEEEEEeccCCCc--EEEEeCC-ceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCE-EeecCCceEEEEeCC
Confidence 456778889995554 7777766 778999988876644 566665 45899999999988 689999999999986
Q ss_pred CCCe-eeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeec----------------------------
Q 018784 92 TGDE-KHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG---------------------------- 142 (350)
Q Consensus 92 ~~~~-~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~---------------------------- 142 (350)
+.+. +....|++.|.++..-.+|++| +|+.|+.|..||-.-.........
T Consensus 276 ~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~G 354 (626)
T KOG2106|consen 276 TNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQG 354 (626)
T ss_pred CceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEe
Confidence 6553 2334799999999999999755 599999999998321000000000
Q ss_pred -----------CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEE
Q 018784 143 -----------NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVK 211 (350)
Q Consensus 143 -----------~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~ 211 (350)
.|....+.++ .++....+++|+.|+.+++|+ ..++..+.....++.++.|+|.|.+++....|.-.
T Consensus 355 t~~~~f~~~v~gh~delwgla-~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~ 431 (626)
T KOG2106|consen 355 TLENGFTLTVQGHGDELWGLA-THPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWF 431 (626)
T ss_pred eecCCceEEEEecccceeeEE-cCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEE
Confidence 1122233333 245566788999999999999 67888888888999999999999555555678889
Q ss_pred EEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEccc-CeeEEee-cCCCcCEEEEEEcCCCCEEEEec
Q 018784 212 FWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT-GEQIGCN-KGHHGPVHCVRFSPGGESYASGS 289 (350)
Q Consensus 212 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~-~~~~~~~-~~h~~~v~~l~~sp~~~~lasgs 289 (350)
+.|..+...+....- ..+.++.-..++|.+|+.|+.|+.|++|-+.. |+.+... +.|..+|+.+.||+|+++|.+-|
T Consensus 432 V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S 510 (626)
T KOG2106|consen 432 VLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS 510 (626)
T ss_pred EEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEecc
Confidence 999988666655444 33334444445799999999999999999864 4554433 34458899999999999999999
Q ss_pred CCCcEEEec
Q 018784 290 EDGTIRIWQ 298 (350)
Q Consensus 290 ~Dg~v~vw~ 298 (350)
-|-.|..|.
T Consensus 511 ~d~eiLyW~ 519 (626)
T KOG2106|consen 511 GDYEILYWK 519 (626)
T ss_pred CceEEEEEc
Confidence 999999993
No 143
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.5e-21 Score=164.31 Aligned_cols=281 Identities=18% Similarity=0.203 Sum_probs=214.5
Q ss_pred eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC------CCceeeeccC-ccCCeEEEEECCCCcEEEEeeCCCeE
Q 018784 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE------TGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTA 85 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~------~~~~~~~l~g-H~~~V~~v~~~~~~~~l~s~s~Dg~v 85 (350)
+||++-|.++.|+. ++++||+|+.|..+++|+++ +.+++..... |...|.|++|.....++.+|+.+++|
T Consensus 53 ~~H~GCiNAlqFS~---N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 53 REHTGCINALQFSH---NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhccccceeeecc---CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 79999999999986 79999999999999999964 3466655543 56889999999999999999999999
Q ss_pred EEeeCCCCCeeeeeeccc---cEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC--eeecCCCCcEEEEEEeCCCCcE
Q 018784 86 KLWDALTGDEKHSFEHKH---IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP--REVGNSSGSIRTVAWLHSDQTI 160 (350)
Q Consensus 86 ~vWd~~~~~~~~~~~h~~---~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~ 160 (350)
.+.|+++.+.+..++|.+ .|+.+..+|..+.|++.+.++.|.+||......+. ...........++.|.|....+
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 999999999888888765 89999999999999999999999999987544222 2334455567788888888999
Q ss_pred EEEEeCCCeEEEEECCCCce-eEe------ecC-CCCeEEEEEecCCcEEEEEcCC-cEEEEECCCccee-eeeecCC--
Q 018784 161 LSSCTDSGGVRLWDARSGKI-VQT------LET-KSPVTSAEVSRDGRYITTADGS-SVKFWDANHFGLV-KGYNMPC-- 228 (350)
Q Consensus 161 ~~s~~~dg~i~iwd~~~~~~-~~~------~~~-~~~v~~~~~~~~~~~l~~~~~~-~i~vwd~~~~~~~-~~~~~~~-- 228 (350)
+++++..+.+.+||.+..+. +.. ++. ......+.|+|+|..+.+-..+ .=.+||+-+.++. ..+....
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 99999999999999986532 211 111 2344677899999877655433 3456776654432 2222111
Q ss_pred -----CCceeEecCCCCcEEEEecCCCeEEEEEccc-----C-----e-------------eEEeecCCCcCEEEEEEcC
Q 018784 229 -----NTESASLEPKLGNIFIAGGEDMWVHVFDFHT-----G-----E-------------QIGCNKGHHGPVHCVRFSP 280 (350)
Q Consensus 229 -----~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~-----~-----~-------------~~~~~~~h~~~v~~l~~sp 280 (350)
...+++|. +...+++|+.+=.|++|.+.. | . .+..++||..-+..+.|+|
T Consensus 290 Y~N~~T~KS~~F~--~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~ 367 (609)
T KOG4227|consen 290 YCNIKTIKSMTFI--DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ 367 (609)
T ss_pred ceeeeeeeeeeee--cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC
Confidence 11222332 345588999888999998731 1 1 2346789999999999999
Q ss_pred CCCEEEEecCCCcEEEec
Q 018784 281 GGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 281 ~~~~lasgs~Dg~v~vw~ 298 (350)
...+|++.+-...++||.
T Consensus 368 H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 368 HNNLLVSSGVENSFKLWS 385 (609)
T ss_pred CcceEeccchhhheeccc
Confidence 999999999999999995
No 144
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.89 E-value=1.9e-21 Score=174.87 Aligned_cols=124 Identities=23% Similarity=0.230 Sum_probs=98.4
Q ss_pred cceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc--ee---eeccCccC-CeEEEEECCCCcEEEEee
Q 018784 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD--WI---GTFEGHKG-AVWSCCLDANALFSASGS 80 (350)
Q Consensus 7 ~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~--~~---~~l~gH~~-~V~~v~~~~~~~~l~s~s 80 (350)
.+++ +.+|++.|.++.|+|+. ..+|||+|.|..++||.+..|- .+ ...-||.+ .|.++.|+|...-+...+
T Consensus 71 ~i~~-l~~H~d~VtDl~FspF~--D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~ 147 (1012)
T KOG1445|consen 71 DIGI-LAAHGDQVTDLGFSPFA--DELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASG 147 (1012)
T ss_pred ccce-eecccceeeccCccccc--hhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEec
Confidence 4455 58999999999999964 4589999999999999986431 11 12234544 467889987544333445
Q ss_pred CCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC
Q 018784 81 ADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR 133 (350)
Q Consensus 81 ~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~ 133 (350)
.-|++.|||+.+++....+ .|...|.+..|+.||.+|++.+.|+.|+|||...
T Consensus 148 a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa 201 (1012)
T KOG1445|consen 148 AHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRA 201 (1012)
T ss_pred cCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCcc
Confidence 7899999999999988776 5999999999999999999999999999999653
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=8e-21 Score=177.34 Aligned_cols=239 Identities=18% Similarity=0.285 Sum_probs=189.0
Q ss_pred cCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC-Ceeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCC
Q 018784 58 EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-DEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD 135 (350)
Q Consensus 58 ~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~-~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~ 135 (350)
.+|+..-..+++.++|.++.+++.||.||+|+.... +...++. +...|.+++... ..|++|+.+++|.+|....++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s--~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS--NHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc--cceEEeeccceEEEeeCCCCC
Confidence 468888899999999999999999999999997655 4444444 777788877654 489999999999999987654
Q ss_pred CCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEecCCcEEEEE-cCCcEEEE
Q 018784 136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFW 213 (350)
Q Consensus 136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vw 213 (350)
.. ..+....-+++.++++. ++.+++.|++|-.|++-++........+. +..+|.++.++|++.+|+++ .+|.|++|
T Consensus 88 ~~-~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 88 ED-TILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred cc-ceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence 32 22334456788888875 56688889999999999998776655555 56899999999999999876 58999999
Q ss_pred ECCCcceeeeeecC--CC-------CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC--CCcCEEEEEEcCCC
Q 018784 214 DANHFGLVKGYNMP--CN-------TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG--HHGPVHCVRFSPGG 282 (350)
Q Consensus 214 d~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~--h~~~v~~l~~sp~~ 282 (350)
|+.++.+.+++..- .+ .....+.|+ +..|+.-+.|+.|.+|+..+++....+.. ++..+..+.|+|+|
T Consensus 166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk-~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPK-GGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred EcccchhhhhcccCCccccccccceeeeeeecCC-CCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence 99988776655431 11 123456665 45666677899999999999999887753 44559999999999
Q ss_pred CEEEEecCCCcEEEecCCC
Q 018784 283 ESYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 283 ~~lasgs~Dg~v~vw~~~~ 301 (350)
+|||++..||.|.|||+.+
T Consensus 245 ~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cEEeeeccCCcEEEEeccc
Confidence 9999999999999999984
No 146
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=5.4e-22 Score=173.68 Aligned_cols=197 Identities=14% Similarity=0.175 Sum_probs=165.5
Q ss_pred ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee
Q 018784 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH 97 (350)
Q Consensus 18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~ 97 (350)
.-.||+... -+.|+++|+..++|+|||+....+.+.+.+|+..|++|.+.....++|+++..|.|.|..+.++....
T Consensus 81 ~~~Cv~~~s---~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt 157 (673)
T KOG4378|consen 81 NAFCVACAS---QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTT 157 (673)
T ss_pred hHHHHhhhh---cceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcccc
Confidence 334454443 24699999999999999999888888999999999999999999999999999999999999888777
Q ss_pred eeecc--ccEeEEEEcCCCCeE-EEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 018784 98 SFEHK--HIVRACAFSEDTHLL-LTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174 (350)
Q Consensus 98 ~~~h~--~~V~~~~~~~~~~~l-~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd 174 (350)
.+.|. ..|+-+.|+|..++| .+++.+|.|.+||+............|..+...++|+|.+..++++-+.|..|.+||
T Consensus 158 ~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 158 TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 77765 457899999987654 578999999999998766666667788999999999999999999999999999999
Q ss_pred CCCCceeEeecCCCCeEEEEEecCCcEEEEEc-CCcEEEEECCC
Q 018784 175 ARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANH 217 (350)
Q Consensus 175 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~ 217 (350)
+++.+....+....|...++|.++|.+|+++. .|.|..||+|.
T Consensus 238 ~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 238 IRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred cccccccceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 99988888888888899999998877766553 45555555543
No 147
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.4e-21 Score=174.59 Aligned_cols=246 Identities=24% Similarity=0.315 Sum_probs=186.9
Q ss_pred ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCe-EEEeeCCCeEEEEE
Q 018784 52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL-LLTGGFEKILRIFD 130 (350)
Q Consensus 52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~-l~sg~~d~~v~vwd 130 (350)
.+...+.||++.|+++..++.|..|++||.||+||||.+.++.++.++.-.+.|+|++|+|.+.. +++++.+..+.+-+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 34457799999999999999999999999999999999999999999988889999999997642 22333333344443
Q ss_pred CCCC------------------------------------CCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC--CeEEE
Q 018784 131 LNRP------------------------------------DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS--GGVRL 172 (350)
Q Consensus 131 ~~~~------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d--g~i~i 172 (350)
..=+ +......-.|...|..+.|...+..+.+++.++ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 2100 000011223556788888876666666555544 46888
Q ss_pred EECCCCceeEee-cCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCc-eeEecCCCCcEEEEecCCC
Q 018784 173 WDARSGKIVQTL-ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGGEDM 250 (350)
Q Consensus 173 wd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~sg~~d~ 250 (350)
.++...+...-+ ...+.+..+.|+|.--+|..++...|++||+....+++.+.-.+... ..+.++ .|..|+.|+.|+
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~ 629 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDK 629 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCC
Confidence 998766554444 34567889999999888888899999999998877776654444333 334444 578899999999
Q ss_pred eEEEEEcccC-eeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784 251 WVHVFDFHTG-EQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 251 ~i~v~d~~~~-~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~ 298 (350)
++..||+.-. +...++..|...+++++|++.-++|+||+.||++.|+-
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 9999999865 56778899999999999999999999999999999984
No 148
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.4e-22 Score=191.50 Aligned_cols=241 Identities=21% Similarity=0.306 Sum_probs=193.1
Q ss_pred CeEEEEECCCCc----EEEEeeCCCeEEEeeCCC---CCeeeee----eccccEeEEEEcCCC-CeEEEeeCCCeEEEEE
Q 018784 63 AVWSCCLDANAL----FSASGSADFTAKLWDALT---GDEKHSF----EHKHIVRACAFSEDT-HLLLTGGFEKILRIFD 130 (350)
Q Consensus 63 ~V~~v~~~~~~~----~l~s~s~Dg~v~vWd~~~---~~~~~~~----~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd 130 (350)
.-+.++|.+.+. ++|.|..||.|-+||... +.....+ .|++.|+.++|++.. ++||+|+.||.|.|||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 346788876554 589999999999999754 2222222 599999999999954 5999999999999999
Q ss_pred CCCCCCCCee-ecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCC---eEEEEEecCC--cEEEE
Q 018784 131 LNRPDAPPRE-VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP---VTSAEVSRDG--RYITT 204 (350)
Q Consensus 131 ~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~---v~~~~~~~~~--~~l~~ 204 (350)
+.+.+.+... .......|.+++|...-++++++++.+|.+.|||+|..+.+..+..... +..+.|+|+. +++++
T Consensus 146 lnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~A 225 (1049)
T KOG0307|consen 146 LNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVA 225 (1049)
T ss_pred cCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeee
Confidence 9886655443 2335677999999988889999999999999999999988877765443 8899999986 34444
Q ss_pred EcC-C--cEEEEECCCcc-eeeeeecCC-CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEc
Q 018784 205 ADG-S--SVKFWDANHFG-LVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFS 279 (350)
Q Consensus 205 ~~~-~--~i~vwd~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s 279 (350)
++| + .|.+||+|.-. ..+.+..+. ......+++.+.++|++++.|+.|.+|+..+++.+..+.....++..+.|+
T Consensus 226 s~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~ 305 (1049)
T KOG0307|consen 226 SGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWC 305 (1049)
T ss_pred cCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeec
Confidence 443 2 69999998643 445554433 346778888888999999999999999999999999998888999999999
Q ss_pred CCCC-EEEEecCCCcEEEecCCCCC
Q 018784 280 PGGE-SYASGSEDGTIRIWQTNPPN 303 (350)
Q Consensus 280 p~~~-~lasgs~Dg~v~vw~~~~~~ 303 (350)
|... .|+.++.||.|-|+.+....
T Consensus 306 pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 306 PRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCcchhhhheeccceeeeeeecCC
Confidence 9876 78899999999999886544
No 149
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.89 E-value=1e-21 Score=159.39 Aligned_cols=283 Identities=20% Similarity=0.208 Sum_probs=188.5
Q ss_pred eeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeecc-CccCCeEEEEECCCCcEEEEeeCCCeEEE
Q 018784 9 PLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKL 87 (350)
Q Consensus 9 ~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~l~s~s~Dg~v~v 87 (350)
.+|+|+|...|+++.|.. . .+|.+|..-|.+++|++.+-+.+..++ .|+..|..+..-|+ ..+.|-+.|+.+.+
T Consensus 7 ~fvLRp~~~~v~s~~fqa---~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQA---N-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred eeEeccccchheehhhcc---c-hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEE
Confidence 467899999999999975 3 358999999999999999998888888 56788888887776 45578899999999
Q ss_pred eeCCCCCeeeeeeccccEeEEEEcC-----CC----CeEEEeeCCC-eEEEEECCCCCCCC---eeecCCCCcEEEEEEe
Q 018784 88 WDALTGDEKHSFEHKHIVRACAFSE-----DT----HLLLTGGFEK-ILRIFDLNRPDAPP---REVGNSSGSIRTVAWL 154 (350)
Q Consensus 88 Wd~~~~~~~~~~~h~~~V~~~~~~~-----~~----~~l~sg~~d~-~v~vwd~~~~~~~~---~~~~~~~~~v~~~~~~ 154 (350)
|++..+..+. .|.-.++++.|.+ ++ +.++.-+..- .+.+=|..+..... .......+.+.+..+-
T Consensus 82 w~ia~s~~i~--i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 82 WTIAYSAFIS--IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred EEccCcceEE--EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 9987643221 1222233333322 11 1111111100 01111211111100 0011234556665544
Q ss_pred CCC--CcEEEEEeCCCeEEEEECCCCceeEeec-----------CCCCeEEEEEecCC-cEEEEEcCCcEEEEECCCc--
Q 018784 155 HSD--QTILSSCTDSGGVRLWDARSGKIVQTLE-----------TKSPVTSAEVSRDG-RYITTADGSSVKFWDANHF-- 218 (350)
Q Consensus 155 ~~~--~~~~~s~~~dg~i~iwd~~~~~~~~~~~-----------~~~~v~~~~~~~~~-~~l~~~~~~~i~vwd~~~~-- 218 (350)
..+ ..++++|.++|.+.+||+.++..+..+. +..++.++.+.+.- +-+..+-+..+..|.+...
T Consensus 160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g 239 (323)
T KOG0322|consen 160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG 239 (323)
T ss_pred ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence 333 3567889999999999999874433332 34678888877532 2233333456777766432
Q ss_pred c--eeeeeec-CCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEE
Q 018784 219 G--LVKGYNM-PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIR 295 (350)
Q Consensus 219 ~--~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~ 295 (350)
. ....... .+........+ +++++++++.|++||+|+.++.+++..++.|.+.|.+++|+|+..+||++|.|++|.
T Consensus 240 slq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 240 SLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred cccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence 1 1111222 12334455555 589999999999999999999999999999999999999999999999999999999
Q ss_pred EecC
Q 018784 296 IWQT 299 (350)
Q Consensus 296 vw~~ 299 (350)
+|++
T Consensus 319 LWkL 322 (323)
T KOG0322|consen 319 LWKL 322 (323)
T ss_pred eeec
Confidence 9986
No 150
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=3e-22 Score=183.58 Aligned_cols=185 Identities=22% Similarity=0.312 Sum_probs=153.1
Q ss_pred EeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEEee
Q 018784 11 VCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWD 89 (350)
Q Consensus 11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd 89 (350)
++..|+..+.++.|++..|. +|+|||.||+|++||+...+-..++.+-..+|+-|.|+|. +..|+++...|.+++||
T Consensus 128 ~f~EH~Rs~~~ldfh~tep~--iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWD 205 (839)
T KOG0269|consen 128 VFNEHERSANKLDFHSTEPN--ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWD 205 (839)
T ss_pred HhhhhccceeeeeeccCCcc--EEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEee
Confidence 57899999999999998886 9999999999999999888888888999999999999985 67889999999999999
Q ss_pred CCCCC-ee-eeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe--
Q 018784 90 ALTGD-EK-HSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT-- 165 (350)
Q Consensus 90 ~~~~~-~~-~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-- 165 (350)
+.... +. ....|++.|.|+.|+|++.+|||||.|+.|+|||+.++.......-+...++..+.|-|.....|++|+
T Consensus 206 lRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv 285 (839)
T KOG0269|consen 206 LRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMV 285 (839)
T ss_pred ccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcc
Confidence 86543 22 234699999999999999999999999999999998766665555566778899999998888888775
Q ss_pred CCCeEEEEECCCC-ceeEeecCC-CCeEEEEEec
Q 018784 166 DSGGVRLWDARSG-KIVQTLETK-SPVTSAEVSR 197 (350)
Q Consensus 166 ~dg~i~iwd~~~~-~~~~~~~~~-~~v~~~~~~~ 197 (350)
.|-.|+|||++.. -+..++..+ ..++.++|..
T Consensus 286 ~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 286 VDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred ccceEEEEeeccccccceeeeccCccccceeccC
Confidence 4568999999765 344455444 4455666654
No 151
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=2e-21 Score=164.88 Aligned_cols=171 Identities=24% Similarity=0.390 Sum_probs=145.0
Q ss_pred cccceeE-eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceee---eccCccCCeEEEEECCC-CcEEEEe
Q 018784 5 KVAVPLV-CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG---TFEGHKGAVWSCCLDAN-ALFSASG 79 (350)
Q Consensus 5 ~~~~~~~-~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~---~l~gH~~~V~~v~~~~~-~~~l~s~ 79 (350)
+...|+. +.||...=++++|||+.. | .|+||..-+.|++|...++.+.. .|.+|+.+|--++|+|. ..+|||+
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~-g-~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaSc 276 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKT-G-RLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASC 276 (440)
T ss_pred cccCceEEecccCccceeeecccccc-c-ccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEee
Confidence 4445654 469999999999999543 3 47888888889999999988854 57889999999999986 5689999
Q ss_pred eCCCeEEEeeCCCC---CeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCC--CCCCeeecCCCCcEEEEEEe
Q 018784 80 SADFTAKLWDALTG---DEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP--DAPPREVGNSSGSIRTVAWL 154 (350)
Q Consensus 80 s~Dg~v~vWd~~~~---~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~--~~~~~~~~~~~~~v~~~~~~ 154 (350)
|-||+|||||+..+ .++.+-.|..-|+.+.|+..-.+||+|+.||+++|||++.. ..+......|..+|+++.|.
T Consensus 277 S~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~ 356 (440)
T KOG0302|consen 277 SCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWH 356 (440)
T ss_pred ecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEec
Confidence 99999999999877 35555679999999999998889999999999999999753 34555678899999999999
Q ss_pred CCCCcEEEEEeCCCeEEEEECCC
Q 018784 155 HSDQTILSSCTDSGGVRLWDARS 177 (350)
Q Consensus 155 ~~~~~~~~s~~~dg~i~iwd~~~ 177 (350)
|.+...+++++.|.+|.+||+..
T Consensus 357 p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 357 PHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred cccCceEEeccCCCcEEEEEeec
Confidence 98888888889999999999853
No 152
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=2.5e-19 Score=157.45 Aligned_cols=281 Identities=19% Similarity=0.268 Sum_probs=199.5
Q ss_pred ccCCceeEEEecccCCCccEEEEE--eCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSA--SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasg--s~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~ 91 (350)
+-+..|.+++|++... |.+|..- |++.-+.+||=..+..+...+.-...|..+.|+|.+.-+.-....+.+..|+..
T Consensus 152 ~f~~GV~~vaFsk~~~-G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~ 230 (626)
T KOG2106|consen 152 FFDRGVTCVAFSKING-GSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLR 230 (626)
T ss_pred cccccceeeeecccCC-CceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEcc
Confidence 4466899999998543 4444332 345557789977776666666666778888999866544444567899999988
Q ss_pred CCCeeeee---e--ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784 92 TGDEKHSF---E--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD 166 (350)
Q Consensus 92 ~~~~~~~~---~--h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~ 166 (350)
.+...... + .+..|.|++|.++|. ++||..+|.|.||+...... .+....|.+.|.++.... ++. ++||+.
T Consensus 231 ~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~-~k~~~aH~ggv~~L~~lr-~Gt-llSGgK 306 (626)
T KOG2106|consen 231 GGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRI-SKQVHAHDGGVFSLCMLR-DGT-LLSGGK 306 (626)
T ss_pred CCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceE-EeEeeecCCceEEEEEec-Ccc-EeecCc
Confidence 77543332 2 346799999999997 67999999999999854333 333448899999998764 444 445999
Q ss_pred CCeEEEEECCCC--c---------eeEeec-CC-----------------------------CCeEEEEEecCC-cEEEE
Q 018784 167 SGGVRLWDARSG--K---------IVQTLE-TK-----------------------------SPVTSAEVSRDG-RYITT 204 (350)
Q Consensus 167 dg~i~iwd~~~~--~---------~~~~~~-~~-----------------------------~~v~~~~~~~~~-~~l~~ 204 (350)
|++|..||-.-. + .++++. .. .+...++..|+. +++++
T Consensus 307 DRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~ 386 (626)
T KOG2106|consen 307 DRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTC 386 (626)
T ss_pred cceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeec
Confidence 999999982111 0 111110 00 122233445543 45667
Q ss_pred EcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCE
Q 018784 205 ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES 284 (350)
Q Consensus 205 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 284 (350)
+.|+.+++|+ ..+++.+........+..|.|. + .++.|...|...+.|..+.+.+..-.. ..++.+++|+|+|.+
T Consensus 387 gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhps-g-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~ 461 (626)
T KOG2106|consen 387 GQDKHVRLWN--DHKLEWTKIIEDPAECADFHPS-G-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAF 461 (626)
T ss_pred cCcceEEEcc--CCceeEEEEecCceeEeeccCc-c-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCCE
Confidence 7899999999 4455555555555566777775 4 999999999999999999776655555 788999999999999
Q ss_pred EEEecCCCcEEEecCCCCCc
Q 018784 285 YASGSEDGTIRIWQTNPPNH 304 (350)
Q Consensus 285 lasgs~Dg~v~vw~~~~~~~ 304 (350)
||.||.|+.|+||.++....
T Consensus 462 lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 462 LAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred EEEecCCCeEEEEEECCCCc
Confidence 99999999999999865443
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.88 E-value=2.1e-21 Score=162.15 Aligned_cols=257 Identities=18% Similarity=0.283 Sum_probs=180.6
Q ss_pred cCCceeEEEecccCCC-ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEEeeCCC
Q 018784 15 HSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALT 92 (350)
Q Consensus 15 H~~~v~~~~~~~~s~d-g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd~~~ 92 (350)
|.+..+.++++--+.+ .-+||.|+.-|.|+|.|+.++++...+.||..+|+.+.+.|+ .++++++|.|.+||+|++.+
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~ 167 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT 167 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC
Confidence 7777777777654443 348888899999999999999999999999999999999986 57899999999999999999
Q ss_pred CCeeeeee----ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee---------------------------e
Q 018784 93 GDEKHSFE----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE---------------------------V 141 (350)
Q Consensus 93 ~~~~~~~~----h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~---------------------------~ 141 (350)
..++..+. |...|.+++|+++|.+++++|.|.++++|++..++..... .
T Consensus 168 ~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~ 247 (385)
T KOG1034|consen 168 DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTT 247 (385)
T ss_pred CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccc
Confidence 99998874 9999999999999999999999999999999743211100 0
Q ss_pred cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC-CCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcce
Q 018784 142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA-RSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGL 220 (350)
Q Consensus 142 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~ 220 (350)
.-|...|-++.|+ +.+++|-+-++.|..|.. +-++.+.....+.....+ +..-.=....+|=+
T Consensus 248 diHrnyVDCvrw~---gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti--------~~~~~~~~c~iWfi----- 311 (385)
T KOG1034|consen 248 DIHRNYVDCVRWF---GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTI--------LGEFDYPMCDIWFI----- 311 (385)
T ss_pred ccccchHHHHHHH---hhheeecccCceEEEEecchhhhhhhccCCCccceee--------eeEeccCccceEEE-----
Confidence 1122333333333 245666666778888876 222222222221111111 00000001112211
Q ss_pred eeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE--eecCC--CcCEEEEEEcCCCCEEEEecCCCcEEE
Q 018784 221 VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG--CNKGH--HGPVHCVRFSPGGESYASGSEDGTIRI 296 (350)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~--~~~~h--~~~v~~l~~sp~~~~lasgs~Dg~v~v 296 (350)
...+.+ -+++|+.|.+.|+|++|||+..++.. ++..+ ...|...+|+.|+.+|+..+.|++|.-
T Consensus 312 -----------rf~~d~-~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwr 379 (385)
T KOG1034|consen 312 -----------RFAFDP-WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWR 379 (385)
T ss_pred -----------EEeecH-HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEE
Confidence 112222 36789999999999999999876632 22222 346899999999999999999999999
Q ss_pred ecC
Q 018784 297 WQT 299 (350)
Q Consensus 297 w~~ 299 (350)
||.
T Consensus 380 wdr 382 (385)
T KOG1034|consen 380 WDR 382 (385)
T ss_pred EEe
Confidence 985
No 154
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=1.9e-20 Score=158.98 Aligned_cols=202 Identities=19% Similarity=0.288 Sum_probs=159.1
Q ss_pred ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCC----------------CCceeeeccCccCCeEEEEECCCCc-EE
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE----------------TGDWIGTFEGHKGAVWSCCLDANAL-FS 76 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~----------------~~~~~~~l~gH~~~V~~v~~~~~~~-~l 76 (350)
+|-+.+.-+..+++- +..+.|+=+..|.|+||++. ..+++.++.+|...=++++|+|-.. .|
T Consensus 149 ~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred ccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 566666666655532 45678888889999999953 2356889999999999999998432 35
Q ss_pred EEeeCCCeEEEeeCCCCCe----eeeeeccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCC-CCCCeeecCCCCcEEE
Q 018784 77 ASGSADFTAKLWDALTGDE----KHSFEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRP-DAPPREVGNSSGSIRT 150 (350)
Q Consensus 77 ~s~s~Dg~v~vWd~~~~~~----~~~~~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~-~~~~~~~~~~~~~v~~ 150 (350)
+||.--+.|++|...++.- +....|+..|-.++|+|. ...|++||-|++|+|||++.+ .........|.+-|..
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV 307 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV 307 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence 7777778999999887652 223459999999999995 467899999999999999865 3344555788889999
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEECCCC---ceeEeec-CCCCeEEEEEecCC--cEEEEEcCCcEEEEECCC
Q 018784 151 VAWLHSDQTILSSCTDSGGVRLWDARSG---KIVQTLE-TKSPVTSAEVSRDG--RYITTADGSSVKFWDANH 217 (350)
Q Consensus 151 ~~~~~~~~~~~~s~~~dg~i~iwd~~~~---~~~~~~~-~~~~v~~~~~~~~~--~~l~~~~~~~i~vwd~~~ 217 (350)
+.|+..-. ++++|++||+++|||+|+. +++..++ +..+|+++.|+|.. .+++++.|.+|.+||+..
T Consensus 308 ISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 308 ISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred EEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 99986544 9999999999999999864 5667776 56899999999854 566777899999999853
No 155
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.1e-20 Score=155.67 Aligned_cols=215 Identities=23% Similarity=0.370 Sum_probs=162.1
Q ss_pred cCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCCCe----------eeee------eccccEeEEEEcC-CCCeEEE
Q 018784 58 EGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTGDE----------KHSF------EHKHIVRACAFSE-DTHLLLT 119 (350)
Q Consensus 58 ~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~----------~~~~------~h~~~V~~~~~~~-~~~~l~s 119 (350)
.-|.++|+++.+.+ .|++++||+.||.|.+||++.... +..+ .|+-.|..+.|-| |..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45889999999976 689999999999999999865431 1111 2666788998988 6668889
Q ss_pred eeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCC--CCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEe
Q 018784 120 GGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS--DQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVS 196 (350)
Q Consensus 120 g~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~ 196 (350)
++.|.+++|||..+.+.... ..-.+.|++-+++|- ..-++++|.+|-+|++.|+.+|..-+.+..+ ..|.++.|+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~--F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVD--FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred ccccceEEEeecccceeeEE--eecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 99999999999986443322 223456666666653 2457788889999999999999999999865 689999999
Q ss_pred cCCcEEE-E-EcCCcEEEEECCCc-ceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCee---EEeecCCC
Q 018784 197 RDGRYIT-T-ADGSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ---IGCNKGHH 270 (350)
Q Consensus 197 ~~~~~l~-~-~~~~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~---~~~~~~h~ 270 (350)
|...++. + +.|+.||+||+|.- .+...+ |..+++. +.+-..|.
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~l-------------------------------D~hn~k~~p~~~~n~ah~ 246 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVL-------------------------------DQHNTKRPPILKTNTAHY 246 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEe-------------------------------ecccCccCcccccccccc
Confidence 9887753 3 35899999999763 333332 2222211 11234689
Q ss_pred cCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784 271 GPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305 (350)
Q Consensus 271 ~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~ 305 (350)
+.|..++|+.++.++++.+.|..+++|+...+...
T Consensus 247 gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 247 GKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred ceeeeeeecccchhhhhccCccceEEeecccCccc
Confidence 99999999999999999999999999998765544
No 156
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=3.2e-21 Score=166.80 Aligned_cols=208 Identities=18% Similarity=0.202 Sum_probs=163.3
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeC
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDA 90 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~ 90 (350)
-.||++.|..+.++-.. ..+|||||.|.+|++||+.++++..++..|.+.|.++.|++ .+.+|++||.|++|++.|+
T Consensus 239 ~~gHTdavl~Ls~n~~~--~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNF--RNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred cccchHHHHHHHhcccc--ceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence 35899999999887532 35999999999999999999999999999999999999987 5789999999999999998
Q ss_pred CCCC-eeeeeeccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784 91 LTGD-EKHSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168 (350)
Q Consensus 91 ~~~~-~~~~~~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg 168 (350)
.... .-..+...+.|-.++|.|.. ..++++..||+|+-+|++....+......|.+.|.++.++.....++++++.|+
T Consensus 317 R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 317 RDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDK 396 (463)
T ss_pred cCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccc
Confidence 6422 22344566779999998854 567788899999999999888888888999999999999988889999999999
Q ss_pred eEEEEECCCCceeEeec--CC-CCeEEEEEecCCc--EEEEEcCCcEEEEECCCccee
Q 018784 169 GVRLWDARSGKIVQTLE--TK-SPVTSAEVSRDGR--YITTADGSSVKFWDANHFGLV 221 (350)
Q Consensus 169 ~i~iwd~~~~~~~~~~~--~~-~~v~~~~~~~~~~--~l~~~~~~~i~vwd~~~~~~~ 221 (350)
+|++|++..-.+..... .. +...+.++.|+-- +.+++..+.+++||+.+...+
T Consensus 397 ~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 397 VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 99999986443321111 11 1233344455433 334445567999998776543
No 157
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=5.1e-18 Score=155.72 Aligned_cols=284 Identities=33% Similarity=0.531 Sum_probs=215.3
Q ss_pred EeeccCCceeEEEecccCCCccEEEEEeC-CCCeeEeeCCCCceeeeccCccCCeEEEEECCCCc-EEEEeeCCCeEEEe
Q 018784 11 VCHGHSRPVVDLFYSPITPDGFFLVSASK-DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLW 88 (350)
Q Consensus 11 ~~~gH~~~v~~~~~~~~s~dg~~lasgs~-d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~-~l~s~s~Dg~v~vW 88 (350)
.+.+|...|..+.|+| ++.++++++. |+.+++|+...+..+..+.+|...|.++++++++. ++++++.|+.|++|
T Consensus 150 ~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~w 226 (466)
T COG2319 150 TLEGHSESVTSLAFSP---DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW 226 (466)
T ss_pred EEecCcccEEEEEECC---CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEE
Confidence 3579999999999987 7878888886 99999999999899999999999999999999987 66666999999999
Q ss_pred eCCCCCeee-ee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784 89 DALTGDEKH-SF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD 166 (350)
Q Consensus 89 d~~~~~~~~-~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~ 166 (350)
|...+.... .+ .|...+ ...|+|++.++++++.|+.+++|++............|...+.++.|.+....++ +++.
T Consensus 227 d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ 304 (466)
T COG2319 227 DLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA-SGSS 304 (466)
T ss_pred ECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEE-EeeC
Confidence 887666555 23 465554 3389999989999999999999999755441222245577888998887444444 4778
Q ss_pred CCeEEEEECCCCceeEeec--CC-CCeEEEEEecCCcEEE-E-EcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCc
Q 018784 167 SGGVRLWDARSGKIVQTLE--TK-SPVTSAEVSRDGRYIT-T-ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGN 241 (350)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~--~~-~~v~~~~~~~~~~~l~-~-~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (350)
|+.+++||.++........ .+ ..+..+.+.+++..+. + ..++.+++|+....................+.+ . .
T Consensus 305 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 382 (466)
T COG2319 305 DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D-G 382 (466)
T ss_pred CCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEEECC-C-C
Confidence 8889999998887665554 33 3588888833323443 3 356789999998776322222222234445555 4 4
Q ss_pred EEEE-ecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784 242 IFIA-GGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 242 ~l~s-g~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~ 301 (350)
.+.. +..++.+.+|+............+...+....+++++..+++++.+..+++|+...
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 383 RVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 4444 78999999999988877766655447899999999999999999999999999866
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.86 E-value=8.1e-18 Score=154.42 Aligned_cols=287 Identities=29% Similarity=0.520 Sum_probs=213.4
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc-eeeeccCccC-CeEEEEE-CCCCc-EEEEe-eCCCeEE
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD-WIGTFEGHKG-AVWSCCL-DANAL-FSASG-SADFTAK 86 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~-~~~~l~gH~~-~V~~v~~-~~~~~-~l~s~-s~Dg~v~ 86 (350)
+.+|...+..+.|.+ .+..++.++.|+.+.+|+...+. ....+.++.. .+..+.+ .+++. +++.. ..|+.++
T Consensus 61 ~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECC---CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 468999999999986 78889999999999999988876 6777777544 6766666 77776 55554 4499999
Q ss_pred EeeCCC-CCeee-eeeccccEeEEEEcCCCCeEEEeeC-CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784 87 LWDALT-GDEKH-SFEHKHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163 (350)
Q Consensus 87 vWd~~~-~~~~~-~~~h~~~V~~~~~~~~~~~l~sg~~-d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s 163 (350)
+|+... ..... ...|...|..++|+|++..+++++. |+.+++|++.... .......|...+..++|.+....++++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcceEEEE
Confidence 999987 44433 4468899999999999998888886 9999999997632 233344578899999999544446777
Q ss_pred EeCCCeEEEEECCCCceeE-eecCCCCeEEEEEecCCcEEE-EEcCCcEEEEECCCcce-eeeeecC-CCCceeEecCCC
Q 018784 164 CTDSGGVRLWDARSGKIVQ-TLETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGL-VKGYNMP-CNTESASLEPKL 239 (350)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~-~~~~~~~-~~~~~~~~~~~~ 239 (350)
++.|++|++||.+.+..+. .+..+.......|++++.+++ ++.++.+++||.+.... ...+..+ .......+.+ .
T Consensus 217 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 295 (466)
T COG2319 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP-D 295 (466)
T ss_pred ecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECC-C
Confidence 7899999999999887777 455443332227899986555 55689999999986654 3333222 2223344555 5
Q ss_pred CcEEEEecCCCeEEEEEcccCeeEEeec--CCCcCEEEEEEcCCCCEEEEe-cCCCcEEEecCCCCC
Q 018784 240 GNIFIAGGEDMWVHVFDFHTGEQIGCNK--GHHGPVHCVRFSPGGESYASG-SEDGTIRIWQTNPPN 303 (350)
Q Consensus 240 ~~~l~sg~~d~~i~v~d~~~~~~~~~~~--~h~~~v~~l~~sp~~~~lasg-s~Dg~v~vw~~~~~~ 303 (350)
+..+++++.|+.+++||+.+........ .|...+..+.|.+++..++.+ ..|+.+++|+.....
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 6777778889889999998887666655 888889999994332455555 788999999987665
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=6.7e-20 Score=160.71 Aligned_cols=265 Identities=15% Similarity=0.229 Sum_probs=193.5
Q ss_pred EeCCCCeeEeeCCCCceeeeccCccC--CeEEEEECCCC-cEEEEeeCCCeEEEeeCCCC--C-eeeeeeccccEeEEEE
Q 018784 37 ASKDSSPMLRNGETGDWIGTFEGHKG--AVWSCCLDANA-LFSASGSADFTAKLWDALTG--D-EKHSFEHKHIVRACAF 110 (350)
Q Consensus 37 gs~d~~v~iw~~~~~~~~~~l~gH~~--~V~~v~~~~~~-~~l~s~s~Dg~v~vWd~~~~--~-~~~~~~h~~~V~~~~~ 110 (350)
+|...+++|||...-+....+-.|+. .+.+++|.... ...++.+.|..+++|.-... + ++........-.|++.
T Consensus 8 aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~ 87 (673)
T KOG4378|consen 8 ASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVAC 87 (673)
T ss_pred eccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhh
Confidence 44456789999876554444444432 38888997665 55677889999999975432 1 1111111112334444
Q ss_pred cCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC--C
Q 018784 111 SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--S 188 (350)
Q Consensus 111 ~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~--~ 188 (350)
.....++++||..++|+|||+. .+...+....|...|+.+.+...|. ++++++..|.|.|..+.++.....+... .
T Consensus 88 ~s~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~sgq 165 (673)
T KOG4378|consen 88 ASQSLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ 165 (673)
T ss_pred hhcceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecCCCC
Confidence 4555899999999999999997 3455566778889999999876555 5677788899999999998877777654 4
Q ss_pred CeEEEEEecCCcEEE--EEcCCcEEEEECCCcceeeeeec-C-CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE
Q 018784 189 PVTSAEVSRDGRYIT--TADGSSVKFWDANHFGLVKGYNM-P-CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG 264 (350)
Q Consensus 189 ~v~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~ 264 (350)
.+.-+.+++..+++. ++++|.|.+||.....++..... + .....++|+|.+..+|++-+.|.+|.+||.+......
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~ 245 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD 245 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc
Confidence 566888998877653 45789999999987766543321 1 2234567778778999999999999999998766655
Q ss_pred eecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCc
Q 018784 265 CNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNH 304 (350)
Q Consensus 265 ~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~ 304 (350)
++. ...+...++|+++|.+|+.|...|.|..||++..+.
T Consensus 246 ~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 246 RLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred eee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCC
Confidence 554 345689999999999999999999999999874443
No 160
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.86 E-value=1.7e-19 Score=163.81 Aligned_cols=306 Identities=18% Similarity=0.275 Sum_probs=206.1
Q ss_pred EEEecccCCCccEEEEEeCCCCeeEeeCCCC--ceeeeccCccCCeEEEEECC---CCcEEEEeeCCCeEEEeeCCCCC-
Q 018784 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETG--DWIGTFEGHKGAVWSCCLDA---NALFSASGSADFTAKLWDALTGD- 94 (350)
Q Consensus 21 ~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~--~~~~~l~gH~~~V~~v~~~~---~~~~l~s~s~Dg~v~vWd~~~~~- 94 (350)
|+++.+ .++..++|.|+.+..+.|+...+. +.+..++||.+-|++++|.. +..++||+|.|..||||.+.-..
T Consensus 150 cL~~~~-~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 150 CLAALK-NNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDD 228 (764)
T ss_pred HHhhhc-cCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCC
Confidence 333444 344567788888888999886544 45668999999999999864 34689999999999999763221
Q ss_pred -----------------------eee---e-----eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC-----
Q 018784 95 -----------------------EKH---S-----FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP----- 138 (350)
Q Consensus 95 -----------------------~~~---~-----~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~----- 138 (350)
... + ..|.+-|+++.|+|.+..|++++.|.++.+|...+.....
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vR 308 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVR 308 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEE
Confidence 000 0 1389999999999999999999999999999876543221
Q ss_pred -eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCcee---Eeec-CCCCeEEEEEecCCcEEE-EEcCCcEEE
Q 018784 139 -REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV---QTLE-TKSPVTSAEVSRDGRYIT-TADGSSVKF 212 (350)
Q Consensus 139 -~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~---~~~~-~~~~v~~~~~~~~~~~l~-~~~~~~i~v 212 (350)
...++..+....+.|+++. .++++-+.-|..++|.......- ..+. +-..|+.+.|+|.|.+|. ++.|.+-|+
T Consensus 309 lGe~gg~a~GF~g~lw~~n~-~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRl 387 (764)
T KOG1063|consen 309 LGEVGGSAGGFWGGLWSPNS-NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRL 387 (764)
T ss_pred eecccccccceeeEEEcCCC-CEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceee
Confidence 1223334557788888655 56666677899999984332211 1222 235788888888887764 345665555
Q ss_pred EECC--------------------Ccce---------------eeeee--------------------------------
Q 018784 213 WDAN--------------------HFGL---------------VKGYN-------------------------------- 225 (350)
Q Consensus 213 wd~~--------------------~~~~---------------~~~~~-------------------------------- 225 (350)
|-.- .... .+.|.
T Consensus 388 Fa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaL 467 (764)
T KOG1063|consen 388 FARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPAL 467 (764)
T ss_pred ecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccc
Confidence 4221 0000 00000
Q ss_pred -------c------------------------------------------------CCCC-ceeEecCCCCcEEEEecC-
Q 018784 226 -------M------------------------------------------------PCNT-ESASLEPKLGNIFIAGGE- 248 (350)
Q Consensus 226 -------~------------------------------------------------~~~~-~~~~~~~~~~~~l~sg~~- 248 (350)
. +... ..+.. .+.+++++++..
T Consensus 468 GLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~-s~~gnliASaCKS 546 (764)
T KOG1063|consen 468 GLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAI-SPTGNLIASACKS 546 (764)
T ss_pred cccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEe-cCCCCEEeehhhh
Confidence 0 0000 01111 123566776653
Q ss_pred ----CCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccc
Q 018784 249 ----DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTD 324 (350)
Q Consensus 249 ----d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (350)
-..|++|+..+...+..+.+|+=.|+.|+||||+++|++.|.|.++.+|........+.. .....
T Consensus 547 ~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~-----------fa~~k 615 (764)
T KOG1063|consen 547 SLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR-----------FACLK 615 (764)
T ss_pred CCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh-----------hcccc
Confidence 346899999998888899999999999999999999999999999999987433322221 22256
Q ss_pred cceeeeeeEEEcccch
Q 018784 325 EVTRKIEGFHINKEGK 340 (350)
Q Consensus 325 ~~~~~i~~~~~~~~g~ 340 (350)
.+++-|.+-.++||+.
T Consensus 616 ~HtRIIWdcsW~pde~ 631 (764)
T KOG1063|consen 616 AHTRIIWDCSWSPDEK 631 (764)
T ss_pred ccceEEEEcccCcccc
Confidence 6888888888888876
No 161
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.85 E-value=5.9e-21 Score=176.38 Aligned_cols=276 Identities=19% Similarity=0.238 Sum_probs=203.9
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~ 91 (350)
++||...|+|++|.. .|+++++|+.|..++||..++..++.++.||++.|+-++.+.+..++|++|.|..||+|-+.
T Consensus 186 LlgH~naVyca~fDr---tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDR---TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHhhhhheeeeeecc---ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 479999999999987 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECC-CCC--CCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC
Q 018784 92 TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-RPD--APPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (350)
Q Consensus 92 ~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d 167 (350)
.+.++..+ .|++.|++++|+|-. +.+.||++++||.. .+. .+..........+.++.+. ....-+++++.|
T Consensus 263 ~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~-~~~~~f~Tgs~d 337 (1113)
T KOG0644|consen 263 DGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFE-NNGDRFLTGSRD 337 (1113)
T ss_pred CCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecc-ccccccccccCC
Confidence 98877765 699999999999965 78899999999976 111 1111111223334444443 334456788888
Q ss_pred CeEEEEECCCCceeEeecCCCCeEEEEEecCC-cEE-EEEcCCcEEEEECCCcceeeeeecCCC-CceeEecCCCCcEEE
Q 018784 168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDG-RYI-TTADGSSVKFWDANHFGLVKGYNMPCN-TESASLEPKLGNIFI 244 (350)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l-~~~~~~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 244 (350)
+.-..|.+..-... ...+.-+..+.+- .+. ++-.+..+.+|++.++.+..-...... .....++|.+..+..
T Consensus 338 ~ea~n~e~~~l~~~-----~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 338 GEARNHEFEQLAWR-----SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred cccccchhhHhhhh-----ccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhh
Confidence 88888875432110 0011111111111 222 233455788899888766554444433 345667788888999
Q ss_pred EecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 245 AGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 245 sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
+++.||...|||+-.|.++.....-...+..-+||++|+.++..-.-|.++|....
T Consensus 413 sag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred hccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccC
Confidence 99999999999999888766554335567788999999988887777888888654
No 162
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=9.7e-20 Score=164.02 Aligned_cols=280 Identities=20% Similarity=0.229 Sum_probs=180.8
Q ss_pred eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeee--ccCccCCeEEEEECCC-CcEEEEeeCCCeEEEee
Q 018784 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT--FEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWD 89 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~--l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd 89 (350)
..|...|.++.+-| .-..|++++.|.+++.||++..++... +-||+.+|.++||.+. ...|+||+.||.|.|||
T Consensus 97 ~aH~nAifDl~wap---ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 97 LAHKNAIFDLKWAP---GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred ccccceeEeeccCC---CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 47999999998776 446899999999999999999988876 8999999999999875 56899999999999999
Q ss_pred CCCCCe-----------------------e-----eeeeccccEeE---EEEcCCCCeEEEeeC-CCeEEEEECCCCCCC
Q 018784 90 ALTGDE-----------------------K-----HSFEHKHIVRA---CAFSEDTHLLLTGGF-EKILRIFDLNRPDAP 137 (350)
Q Consensus 90 ~~~~~~-----------------------~-----~~~~h~~~V~~---~~~~~~~~~l~sg~~-d~~v~vwd~~~~~~~ 137 (350)
+.-... + .-..+.+.+.+ +-+..|...||++|. |+.|+|||+.+.+..
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~ 253 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA 253 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence 632110 0 00113334444 445567778888877 999999999875543
Q ss_pred Ceee-------cCC---CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc--eeEeecCC---CCeEEEEEecCCcEE
Q 018784 138 PREV-------GNS---SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK--IVQTLETK---SPVTSAEVSRDGRYI 202 (350)
Q Consensus 138 ~~~~-------~~~---~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~--~~~~~~~~---~~v~~~~~~~~~~~l 202 (350)
.+.. ..+ .-.+.++.....+.+++++|. |+.|++|++++.. ++..+.+. .--..-..+|++.++
T Consensus 254 ~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 254 YRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred cccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 2211 111 112333333344678899998 7899999998653 33333221 112233467999888
Q ss_pred EEE-cCCcEEEEECCCcceee-eeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccCee--------------EEe
Q 018784 203 TTA-DGSSVKFWDANHFGLVK-GYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ--------------IGC 265 (350)
Q Consensus 203 ~~~-~~~~i~vwd~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~--------------~~~ 265 (350)
+++ .+....+|.+.+....- .+..+.. ...+.+.+..-.-+++++.|..+++|++..+-. ...
T Consensus 333 ~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~r 412 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRR 412 (720)
T ss_pred eccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCchhhccccccchhhhhhhhh
Confidence 765 57889999887654321 1111111 223334443445567779999999999865421 123
Q ss_pred ecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784 266 NKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 266 ~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~ 298 (350)
+.+|.-.+..+-++-.+.+.... .+..++|.
T Consensus 413 fk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~s 443 (720)
T KOG0321|consen 413 FKGHLPQVLNVNSSLRKTYKDPR--EGMNRISS 443 (720)
T ss_pred hhccccccccccccccccccchh--hhcccccc
Confidence 45666556555555444333322 34455554
No 163
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=3e-19 Score=153.13 Aligned_cols=289 Identities=18% Similarity=0.233 Sum_probs=195.1
Q ss_pred eeccC-CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC---------ceeeeccCccCCeEEEEECCCCcEEEEeeC
Q 018784 12 CHGHS-RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG---------DWIGTFEGHKGAVWSCCLDANALFSASGSA 81 (350)
Q Consensus 12 ~~gH~-~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~---------~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~ 81 (350)
.+=|. .||..+.|...+ ...+|||+.|..|+||.+..+ +.+..|.+|..+|+++.|+|+|.+||||+.
T Consensus 8 i~wH~~~pv~s~dfq~n~--~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D 85 (434)
T KOG1009|consen 8 ISWHDHEPVYSVDFQKNS--LNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGD 85 (434)
T ss_pred EEecCCCceEEEEeccCc--ccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCC
Confidence 34444 389999998733 238999999999999996542 345678999999999999999999999999
Q ss_pred CCeEEEeeCC--------C----CCeee----ee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCC
Q 018784 82 DFTAKLWDAL--------T----GDEKH----SF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS 144 (350)
Q Consensus 82 Dg~v~vWd~~--------~----~~~~~----~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~ 144 (350)
+|.|.+|... + .++.. .+ .|...++.++|+|++.++++++-|.++++||+..+... .....|
T Consensus 86 ~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~-~~~~dh 164 (434)
T KOG1009|consen 86 GGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL-AILDDH 164 (434)
T ss_pred CceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE-eecccc
Confidence 9999999754 2 01111 11 38888999999999999999999999999999876543 344667
Q ss_pred CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec--------------------C----CCCeEEEEEecCCc
Q 018784 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--------------------T----KSPVTSAEVSRDGR 200 (350)
Q Consensus 145 ~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~--------------------~----~~~v~~~~~~~~~~ 200 (350)
...+.-++|.+-.+ .+++-+.|...+.+.+...+.+.... + ..-...++|+|+|.
T Consensus 165 ~~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~ 243 (434)
T KOG1009|consen 165 EHYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGS 243 (434)
T ss_pred ccccceeecchhhh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCc
Confidence 78888898875443 45555566655555554332222111 0 11234567899999
Q ss_pred EEEEEc-----CCcE-----EEEECCCc-ceeeeeecCCCC------------------ceeEecCCCCcEEEEecCCCe
Q 018784 201 YITTAD-----GSSV-----KFWDANHF-GLVKGYNMPCNT------------------ESASLEPKLGNIFIAGGEDMW 251 (350)
Q Consensus 201 ~l~~~~-----~~~i-----~vwd~~~~-~~~~~~~~~~~~------------------~~~~~~~~~~~~l~sg~~d~~ 251 (350)
++++.. ++.+ .+|+-... +++..+..+... ....+.-+.+-+++.++ .+.
T Consensus 244 llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~s 322 (434)
T KOG1009|consen 244 LLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNS 322 (434)
T ss_pred EEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cce
Confidence 887532 2222 34432211 111111111100 00011122334455555 457
Q ss_pred EEEEEcccCeeEEeec-CCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784 252 VHVFDFHTGEQIGCNK-GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305 (350)
Q Consensus 252 i~v~d~~~~~~~~~~~-~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~ 305 (350)
|++||..+..++.... -|-..|+.++|+++|.+|+..|.||...+-...+.++.
T Consensus 323 vyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 323 VYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred EEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 9999999888877664 58889999999999999999999998877666554443
No 164
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=9e-19 Score=165.80 Aligned_cols=282 Identities=18% Similarity=0.299 Sum_probs=193.7
Q ss_pred CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCcc---CCeEEEEE--CCCCcEEEEeeCCCeEEEeeC
Q 018784 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHK---GAVWSCCL--DANALFSASGSADFTAKLWDA 90 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~---~~V~~v~~--~~~~~~l~s~s~Dg~v~vWd~ 90 (350)
..+-..+.|+|++| .++++.....|++||-+.++.+.-|..+. ..|..+.+ ..|..++.+|+.||.||||+-
T Consensus 1064 ~~~pk~~~~hpf~p---~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEP---QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred CCCCceeeecCCCc---eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 33566778999887 68887767789999999999988776543 45777776 346678899999999999974
Q ss_pred CCC---Ce--eeeee--------ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCC
Q 018784 91 LTG---DE--KHSFE--------HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD 157 (350)
Q Consensus 91 ~~~---~~--~~~~~--------h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 157 (350)
... +. +.-+. ..+.=.-++|..+..+|+++|.-+.|||||+.+..............++++......
T Consensus 1141 y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~ 1220 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVH 1220 (1387)
T ss_pred cccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccC
Confidence 322 11 11111 111114457888777788878799999999976443333333455667777665556
Q ss_pred CcEEEEEeCCCeEEEEECCCCce---eEeecC-C--CCeEEEEEecCC--cEEEEEcCCcEEEEECCCcceeeeeecCC-
Q 018784 158 QTILSSCTDSGGVRLWDARSGKI---VQTLET-K--SPVTSAEVSRDG--RYITTADGSSVKFWDANHFGLVKGYNMPC- 228 (350)
Q Consensus 158 ~~~~~s~~~dg~i~iwd~~~~~~---~~~~~~-~--~~v~~~~~~~~~--~~l~~~~~~~i~vwd~~~~~~~~~~~~~~- 228 (350)
+.++++|-.||.|++||.|.... +..... . .+|..+.+.++| ++++++.+|.|++||+|.......+....
T Consensus 1221 gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1221 GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 78899999999999999986532 333332 2 348888888765 56677789999999999742211111111
Q ss_pred ---C-CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCC-------CcCEEEEEEcCCCCEEEEecCCCcEEEe
Q 018784 229 ---N-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGH-------HGPVHCVRFSPGGESYASGSEDGTIRIW 297 (350)
Q Consensus 229 ---~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~lasgs~Dg~v~vw 297 (350)
. ..+.........++++|+. +.|+||++. |+.+..++.+ .+.+.|++|+|..-++|.|+.|.+|.||
T Consensus 1301 ~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred cccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEe
Confidence 1 1222223334678999988 999999985 4444333322 3568999999999999999999999999
Q ss_pred cCCCC
Q 018784 298 QTNPP 302 (350)
Q Consensus 298 ~~~~~ 302 (350)
...++
T Consensus 1379 s~~k~ 1383 (1387)
T KOG1517|consen 1379 SCEKP 1383 (1387)
T ss_pred ecCCc
Confidence 76544
No 165
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.1e-18 Score=151.83 Aligned_cols=238 Identities=16% Similarity=0.274 Sum_probs=184.2
Q ss_pred CCeEEEEECCCCcEEEEeeCCCeEEEeeCCC--CCeeeeee-ccccEeEEEEcCCCC-eEEEeeCCCeEEEEECCCCCCC
Q 018784 62 GAVWSCCLDANALFSASGSADFTAKLWDALT--GDEKHSFE-HKHIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAP 137 (350)
Q Consensus 62 ~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~--~~~~~~~~-h~~~V~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~~~~ 137 (350)
+.|+++.|+|...++.++|.|++++++.+.. ...+..+. ...++.++.|+|+|+ .+++++.-..+.+||+.+.+..
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccc
Confidence 6799999999999999999999999998743 22333333 356789999999999 8899999999999999764422
Q ss_pred C-ee-ecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEE-EEcCCcEEEEE
Q 018784 138 P-RE-VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-TADGSSVKFWD 214 (350)
Q Consensus 138 ~-~~-~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~i~vwd 214 (350)
. .. .+.....+.....+|. +.+++..+..|.|.+--..+++.+..++..+.+..++|+.+++.|. ++.+|.|.+||
T Consensus 294 k~~~~~g~e~~~~e~FeVShd-~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~n 372 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHD-SNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWN 372 (514)
T ss_pred cccCCCCcccchhheeEecCC-CCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEe
Confidence 1 11 1222334555555554 4467777888999999999999999999999999999999998664 55678999999
Q ss_pred CCCcceeeeeecCCCCceeEec-CCCCcEEEEecCCCeEEEEEccc------CeeEEeecCCCcCEEEEEEcCCCCEEEE
Q 018784 215 ANHFGLVKGYNMPCNTESASLE-PKLGNIFIAGGEDMWVHVFDFHT------GEQIGCNKGHHGPVHCVRFSPGGESYAS 287 (350)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~sg~~d~~i~v~d~~~------~~~~~~~~~h~~~v~~l~~sp~~~~las 287 (350)
+++..+++.+.-.......+++ ..++.+||+|+..|.|.|||..+ .+++.++..-...|++|.|+|+.++||.
T Consensus 373 l~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAi 452 (514)
T KOG2055|consen 373 LRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAI 452 (514)
T ss_pred cCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhh
Confidence 9999888887665544333332 33578999999999999999643 3456667777889999999999999887
Q ss_pred ecC--CCcEEEecCC
Q 018784 288 GSE--DGTIRIWQTN 300 (350)
Q Consensus 288 gs~--Dg~v~vw~~~ 300 (350)
+|. +..+|+--+.
T Consensus 453 aS~~~knalrLVHvP 467 (514)
T KOG2055|consen 453 ASRVKKNALRLVHVP 467 (514)
T ss_pred hhhccccceEEEecc
Confidence 774 5677776553
No 166
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=8e-18 Score=152.76 Aligned_cols=240 Identities=17% Similarity=0.247 Sum_probs=178.5
Q ss_pred EeeccCC-ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784 11 VCHGHSR-PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (350)
Q Consensus 11 ~~~gH~~-~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd 89 (350)
++.||++ .|-+++|+ +|..|.|.+-+|+|.-||+.+++.+..++.-.++||+++.+|....++.|+.||.+...+
T Consensus 63 vi~g~~drsIE~L~W~----e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s 138 (691)
T KOG2048|consen 63 VIHGPEDRSIESLAWA----EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFS 138 (691)
T ss_pred EEecCCCCceeeEEEc----cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEe
Confidence 4566665 78899998 566789999999999999999999999999999999999999999999999999887777
Q ss_pred CCCCCeeee--e-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe------ee-cCCCCcEEEEEEeCCCCc
Q 018784 90 ALTGDEKHS--F-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR------EV-GNSSGSIRTVAWLHSDQT 159 (350)
Q Consensus 90 ~~~~~~~~~--~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~------~~-~~~~~~v~~~~~~~~~~~ 159 (350)
...++.... + ..++.|.+++|+|++..+++|+.||.|++||+.++..... .. .....-|+++.+..+ .
T Consensus 139 ~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd--~ 216 (691)
T KOG2048|consen 139 IGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD--S 216 (691)
T ss_pred cCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec--C
Confidence 766654332 2 3568899999999999999999999999999987654321 11 123456888888843 3
Q ss_pred EEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEecCCcEEE-EEcCCcEEEEECCCcce--e--eeeecCCCC-ce
Q 018784 160 ILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHFGL--V--KGYNMPCNT-ES 232 (350)
Q Consensus 160 ~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~-~~~~~~i~vwd~~~~~~--~--~~~~~~~~~-~~ 232 (350)
.+++|...|+|++||...+..+.... +...|.+++.++++..+. ++-|+.|.-|-..+.+. + .....+.+. .+
T Consensus 217 tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs 296 (691)
T KOG2048|consen 217 TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRS 296 (691)
T ss_pred cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccccee
Confidence 57788888999999999998877766 457899999999876654 45576655554433221 1 111222222 22
Q ss_pred eEecCCCCcEEEEecCCCeEEEEEccc
Q 018784 233 ASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (350)
Q Consensus 233 ~~~~~~~~~~l~sg~~d~~i~v~d~~~ 259 (350)
.... +..+++|+.|..+.+-..+.
T Consensus 297 ~av~---~~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 297 MAVI---ENALISGGRDFTLAICSSRE 320 (691)
T ss_pred eeee---cceEEecceeeEEEEccccc
Confidence 2222 35899999999988876554
No 167
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=9.5e-19 Score=145.62 Aligned_cols=245 Identities=17% Similarity=0.223 Sum_probs=176.1
Q ss_pred eEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeec
Q 018784 64 VWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG 142 (350)
Q Consensus 64 V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~ 142 (350)
..|+.|++-|.++|.|..||.|.|||..|......+ .|..+|.+++|+++|..|+|+|.|..|++||+.++....+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-- 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-- 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE--
Confidence 678899999999999999999999999988755555 69999999999999999999999999999999988744332
Q ss_pred CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec--CC----CCeEEEEEecCCcEEEEEc-CCcEEEEEC
Q 018784 143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--TK----SPVTSAEVSRDGRYITTAD-GSSVKFWDA 215 (350)
Q Consensus 143 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~--~~----~~v~~~~~~~~~~~l~~~~-~~~i~vwd~ 215 (350)
....+|+.+.|.|...+.++.+-.+..-.+-++..++. ..+. .. .......|.+.|+++.++. -|.+.++|.
T Consensus 104 rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a 182 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDA 182 (405)
T ss_pred EccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEec
Confidence 24567889999887666655554444444555543221 1111 11 1122235788899998876 478999999
Q ss_pred CCcceeeeeecCC-CCceeEecCCCCcEEEEecCCCeEEEEEcccCee------E---EeecC--CCcCEEEEEEcCCCC
Q 018784 216 NHFGLVKGYNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ------I---GCNKG--HHGPVHCVRFSPGGE 283 (350)
Q Consensus 216 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~------~---~~~~~--h~~~v~~l~~sp~~~ 283 (350)
.+.+++..+.... ........+..++.|+..+.|+.||.|++..-.. + +.++. ..-.=.+++|+.+|.
T Consensus 183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge 262 (405)
T KOG1273|consen 183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE 262 (405)
T ss_pred chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence 9998887776654 2222333445689999999999999999863211 1 11110 111235789999999
Q ss_pred EEEEec-CCCcEEEecCCCCCcccCCCCC
Q 018784 284 SYASGS-EDGTIRIWQTNPPNHEENHSGT 311 (350)
Q Consensus 284 ~lasgs-~Dg~v~vw~~~~~~~~~~~~~~ 311 (350)
|++.|+ .-..++||....+.+....+|.
T Consensus 263 Yv~a~s~~aHaLYIWE~~~GsLVKILhG~ 291 (405)
T KOG1273|consen 263 YVCAGSARAHALYIWEKSIGSLVKILHGT 291 (405)
T ss_pred EEEeccccceeEEEEecCCcceeeeecCC
Confidence 987666 4568999998888877666554
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=8.2e-19 Score=144.39 Aligned_cols=274 Identities=21% Similarity=0.235 Sum_probs=187.1
Q ss_pred eEeeccCCceeEEEecccCCCccEEEEEeCCC-------CeeEeeCCC---------Cceeeecc-CccCCeEEEEECCC
Q 018784 10 LVCHGHSRPVVDLFYSPITPDGFFLVSASKDS-------SPMLRNGET---------GDWIGTFE-GHKGAVWSCCLDAN 72 (350)
Q Consensus 10 ~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~-------~v~iw~~~~---------~~~~~~l~-gH~~~V~~v~~~~~ 72 (350)
.++.-|.+.|+.++-+|. +.++|+|.-+|- .+-||.+.. .+++..|. .|-+.|.|+.|.|+
T Consensus 57 kvf~h~agEvw~las~P~--d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPF--DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhcCCcceehhhcCCC--CCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 345678899999999985 456888876532 256898532 23444554 46679999999999
Q ss_pred CcEEEEeeCCCeEEEeeCCCCCe-eeee------eccccEeEEEEcC--CCCeEEEeeCCCeEEEEECCCCCCCCeeecC
Q 018784 73 ALFSASGSADFTAKLWDALTGDE-KHSF------EHKHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143 (350)
Q Consensus 73 ~~~l~s~s~Dg~v~vWd~~~~~~-~~~~------~h~~~V~~~~~~~--~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~ 143 (350)
+..+++- .|..|.+|++..+.. ...+ .+.....+-+|+| +++.+++. .|+++..||+++..........
T Consensus 135 s~klasm-~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dA 212 (370)
T KOG1007|consen 135 SDKLASM-DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDA 212 (370)
T ss_pred CCeeEEe-ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhh
Confidence 9888764 499999999977654 2222 2455677778888 77777765 4889999999876665555567
Q ss_pred CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC-ceeEeecCC-CCeEEEEEecCC--cEEEEEcCCcEEEEECCCcc
Q 018784 144 SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETK-SPVTSAEVSRDG--RYITTADGSSVKFWDANHFG 219 (350)
Q Consensus 144 ~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~~~-~~v~~~~~~~~~--~~l~~~~~~~i~vwd~~~~~ 219 (350)
|...++.+.|.|..+.++++|++||.|+|||.|.. .++..+..+ .-+.++.|+|.. .+|.+++|..|.+|-...-.
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence 77889999999999999999999999999999875 466677655 468888998854 34456678888888764322
Q ss_pred eeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCE-EEEecCCCcEEEec
Q 018784 220 LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES-YASGSEDGTIRIWQ 298 (350)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~-lasgs~Dg~v~vw~ 298 (350)
....+........ .+ ..|..=++=-+. ...+.++..|+..|++++||.-.+. |||-|.||++.|=.
T Consensus 293 SE~qi~~~~dese---~e---------~~dseer~kpL~-dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~ 359 (370)
T KOG1007|consen 293 SEQQIEFEDDESE---SE---------DEDSEERVKPLQ-DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISS 359 (370)
T ss_pred ccccccccccccc---Cc---------chhhHHhccccc-ccccccccccccceEEEeeccCCCeeEEEeccCceEEeec
Confidence 1111111000000 00 000000000001 1234456789999999999987766 68999999999876
Q ss_pred CC
Q 018784 299 TN 300 (350)
Q Consensus 299 ~~ 300 (350)
++
T Consensus 360 V~ 361 (370)
T KOG1007|consen 360 VP 361 (370)
T ss_pred CC
Confidence 53
No 169
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2.1e-18 Score=153.15 Aligned_cols=210 Identities=20% Similarity=0.260 Sum_probs=157.3
Q ss_pred ccccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeec-cCccCCeEEEEECC--CCcEEEEee
Q 018784 4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-EGHKGAVWSCCLDA--NALFSASGS 80 (350)
Q Consensus 4 ~~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l-~gH~~~V~~v~~~~--~~~~l~s~s 80 (350)
|++....++.||++=|.++.|+. +|.+|++||.|--+.|||.-..++++.+ .||++.|.++.|-| ...+++||.
T Consensus 38 rrL~lE~eL~GH~GCVN~LeWn~---dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 38 RRLDLEAELTGHTGCVNCLEWNA---DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred hhcchhhhhccccceecceeecC---CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc
Confidence 56777778899999999998886 9999999999999999999888888776 58999999999976 567899999
Q ss_pred CCCeEEEeeCCCCCe----------eeee-eccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCeeec------
Q 018784 81 ADFTAKLWDALTGDE----------KHSF-EHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVG------ 142 (350)
Q Consensus 81 ~Dg~v~vWd~~~~~~----------~~~~-~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~~------ 142 (350)
.|..|+++|+...+. ...+ .|...|.-++-.|++ +.+.+++.||+++-+|+..+..-.....
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ 194 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILV 194 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHH
Confidence 999999999874221 1111 388889999999988 8899999999999999976432111100
Q ss_pred ---CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC--------c----------eeEeecC-------------CC
Q 018784 143 ---NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG--------K----------IVQTLET-------------KS 188 (350)
Q Consensus 143 ---~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~--------~----------~~~~~~~-------------~~ 188 (350)
..--...++..+|....+++.|+.|-..++||.|.. . ++.-+.. ..
T Consensus 195 ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~ 274 (758)
T KOG1310|consen 195 NYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYIT 274 (758)
T ss_pred HhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccccccccee
Confidence 011235677788889999999999999999995421 1 1111110 11
Q ss_pred CeEEEEEecCCcEE-EEEcCCcEEEEECC
Q 018784 189 PVTSAEVSRDGRYI-TTADGSSVKFWDAN 216 (350)
Q Consensus 189 ~v~~~~~~~~~~~l-~~~~~~~i~vwd~~ 216 (350)
.++-+.|+|+|.-| +.-.+-.|.++|+.
T Consensus 275 ~~t~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 275 CCTYVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred eeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence 25677899998644 44455578888754
No 170
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=2.6e-17 Score=148.02 Aligned_cols=266 Identities=12% Similarity=0.193 Sum_probs=172.5
Q ss_pred EEEEeCCCCeeEeeCCC-Cc--eeeeccCccCCeEEEEECCCCcEEEEe-eCCCeEEEeeCC-CCCe--eeeeeccccEe
Q 018784 34 LVSASKDSSPMLRNGET-GD--WIGTFEGHKGAVWSCCLDANALFSASG-SADFTAKLWDAL-TGDE--KHSFEHKHIVR 106 (350)
Q Consensus 34 lasgs~d~~v~iw~~~~-~~--~~~~l~gH~~~V~~v~~~~~~~~l~s~-s~Dg~v~vWd~~-~~~~--~~~~~h~~~V~ 106 (350)
.++...|+.|++|++.+ ++ .+..+. +.+....++++|++++|+.+ ..++.|.+|++. .+.. .........+.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 34457789999999864 43 445554 23456678999999977554 568999999986 2322 12223334577
Q ss_pred EEEEcCCCCeEEEeeC-CCeEEEEECCCCCCCCee--ecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeE-
Q 018784 107 ACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPRE--VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ- 182 (350)
Q Consensus 107 ~~~~~~~~~~l~sg~~-d~~v~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~- 182 (350)
.++|+|++++|++++. ++.|.+|++......... ...+......+++.++++.++++...++.|.+||+.+...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 8999999999888764 889999998643221111 111223456677777777777888888999999997633221
Q ss_pred ------eecCCCCeEEEEEecCCcEEEEEc--CCcEEEEECCC--c--ceeeeeec-CC------CCceeEecCCCCcEE
Q 018784 183 ------TLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANH--F--GLVKGYNM-PC------NTESASLEPKLGNIF 243 (350)
Q Consensus 183 ------~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~--~--~~~~~~~~-~~------~~~~~~~~~~~~~~l 243 (350)
..........+.|+|+++++.+.+ ++.|.+||+.. . ..+..+.. +. ....+.+.| +++++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~l 242 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHL 242 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEE
Confidence 122234567889999999886654 67999999863 2 22333221 11 111244555 46655
Q ss_pred EEe-cCCCeEEEEEcccCeeEEeecCCC---cCEEEEEEcCCCCEEEEecC-CCcEEEecCCC
Q 018784 244 IAG-GEDMWVHVFDFHTGEQIGCNKGHH---GPVHCVRFSPGGESYASGSE-DGTIRIWQTNP 301 (350)
Q Consensus 244 ~sg-~~d~~i~v~d~~~~~~~~~~~~h~---~~v~~l~~sp~~~~lasgs~-Dg~v~vw~~~~ 301 (350)
.++ ..++.|.+|++........+.++. .....++|+|+|++|+++.. +++|.+|+++.
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 555 457899999986533211222221 24567999999999886665 89999998753
No 171
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=4.7e-18 Score=141.05 Aligned_cols=217 Identities=17% Similarity=0.324 Sum_probs=148.0
Q ss_pred cCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee----e-eccccEeEEEEc-C-CCCeEEEeeCCCeEEEEE
Q 018784 58 EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS----F-EHKHIVRACAFS-E-DTHLLLTGGFEKILRIFD 130 (350)
Q Consensus 58 ~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~----~-~h~~~V~~~~~~-~-~~~~l~sg~~d~~v~vwd 130 (350)
.+|.+-|.++.|++.|+.+||+|.|++|+|||......... . .|.+.|..+.|. | .|+.+|+++.|++++||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 57999999999999999999999999999999754432222 2 488999999885 4 689999999999999996
Q ss_pred CC--CCCC------CCeeecCCCCcEEEEEEeCCC-CcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcE
Q 018784 131 LN--RPDA------PPREVGNSSGSIRTVAWLHSD-QTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRY 201 (350)
Q Consensus 131 ~~--~~~~------~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 201 (350)
-. +.+. ....+......|+.+.|.|.. +..+++++.||++|||+.-....+.......++..+ ..|-++.
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~-~~pp~~~ 168 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNV-IDPPGKN 168 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhc-cCCcccc
Confidence 41 1111 112334567789999998754 567899999999999987654333333222222111 1111110
Q ss_pred EEEEcCCcEEEEECCCcceeeeeecCCCCceeEecC--CCCcEEEEecCC-----CeEEEEEcccC----eeEEeecCCC
Q 018784 202 ITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEP--KLGNIFIAGGED-----MWVHVFDFHTG----EQIGCNKGHH 270 (350)
Q Consensus 202 l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~sg~~d-----~~i~v~d~~~~----~~~~~~~~h~ 270 (350)
. . ...++++++ ....+|++|+.+ +.++||....+ ..+..+.+|.
T Consensus 169 ~-----------------------~--~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~ 223 (361)
T KOG2445|consen 169 K-----------------------Q--PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT 223 (361)
T ss_pred c-----------------------C--cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC
Confidence 0 0 001111111 123566777665 46778765433 2456778999
Q ss_pred cCEEEEEEcCCC----CEEEEecCCCcEEEecCCC
Q 018784 271 GPVHCVRFSPGG----ESYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 271 ~~v~~l~~sp~~----~~lasgs~Dg~v~vw~~~~ 301 (350)
.+|++++|.|+- .+||+++.|| |+||++..
T Consensus 224 dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 224 DPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred CcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 999999999972 5689999999 99999864
No 172
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=4e-17 Score=131.48 Aligned_cols=262 Identities=15% Similarity=0.221 Sum_probs=187.7
Q ss_pred cCCCccEEEEEeCCCCeeEeeCCC----------CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe-
Q 018784 27 ITPDGFFLVSASKDSSPMLRNGET----------GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE- 95 (350)
Q Consensus 27 ~s~dg~~lasgs~d~~v~iw~~~~----------~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~- 95 (350)
++|.+++|+.|+.+|+|.+..+.+ ...+....+|.++|+.++|. ..+|.++ .||.|+=|.-.....
T Consensus 18 ~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-gdG~V~gw~W~E~~es 94 (325)
T KOG0649|consen 18 ISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-GDGLVYGWEWNEEEES 94 (325)
T ss_pred hCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec-cCceEEEeeehhhhhh
Confidence 456899999999999999877532 23345668999999999997 3455555 469999997533221
Q ss_pred ---eeeee-----cc-----ccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEE
Q 018784 96 ---KHSFE-----HK-----HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS 162 (350)
Q Consensus 96 ---~~~~~-----h~-----~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 162 (350)
+..+. |. ..|+++-..|..+-++.++.|+.+.-||++++... +....|...+.++.-.. ....++
T Consensus 95 ~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~-r~~rGHtDYvH~vv~R~-~~~qil 172 (325)
T KOG0649|consen 95 LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQ-REYRGHTDYVHSVVGRN-ANGQIL 172 (325)
T ss_pred ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEE-EEEcCCcceeeeeeecc-cCccee
Confidence 11111 22 34788999998888888889999999999987643 45567888888887533 334577
Q ss_pred EEeCCCeEEEEECCCCceeEeecCCC---------CeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCcee
Q 018784 163 SCTDSGGVRLWDARSGKIVQTLETKS---------PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESA 233 (350)
Q Consensus 163 s~~~dg~i~iwd~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~ 233 (350)
+|++||++|+||+++++++..+.... .-.-.+..-+..+++++.+..+.+|.++...+...+..+.....+
T Consensus 173 sG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpipa~v~~v 252 (325)
T KOG0649|consen 173 SGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIPARVHLV 252 (325)
T ss_pred ecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecccceeEe
Confidence 99999999999999999998886421 111144556678999999999999999999988888888777777
Q ss_pred EecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCC-CEEEEecCCCcEEEe
Q 018784 234 SLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGG-ESYASGSEDGTIRIW 297 (350)
Q Consensus 234 ~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~-~~lasgs~Dg~v~vw 297 (350)
.|. ...++++++.+.+.-|.+. |.........+...++..++-.. +++-.++..+.+.|.
T Consensus 253 ~F~---~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 253 DFV---DDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred eee---cceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 765 4577888888889988874 34333333333345666665332 445556666667665
No 173
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=2.1e-19 Score=150.21 Aligned_cols=205 Identities=26% Similarity=0.384 Sum_probs=151.9
Q ss_pred cccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeec---cCccCCeEEEEECCCCcEEEEeeC
Q 018784 5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF---EGHKGAVWSCCLDANALFSASGSA 81 (350)
Q Consensus 5 ~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l---~gH~~~V~~v~~~~~~~~l~s~s~ 81 (350)
++-+.+ +||...|.++.|.|-.| .+|+++|.|.+||||++++..++..| +||.+.|.++.|++++.+++|+|.
T Consensus 126 ~~~~~~--~ghG~sINeik~~p~~~--qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGm 201 (385)
T KOG1034|consen 126 QCSKNY--RGHGGSINEIKFHPDRP--QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGM 201 (385)
T ss_pred hhccce--eccCccchhhhcCCCCC--cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCC
Confidence 344444 79999999999999544 49999999999999999999998876 679999999999999999999999
Q ss_pred CCeEEEeeCCCCCeee-------------------------ee----eccccEeEEEEcCCCCeEEEeeCCCeEEEEECC
Q 018784 82 DFTAKLWDALTGDEKH-------------------------SF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132 (350)
Q Consensus 82 Dg~v~vWd~~~~~~~~-------------------------~~----~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~ 132 (350)
|.++++|++...+... .+ .|.+.|.|+.|- |.++++=|-++.|..|...
T Consensus 202 Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pg 279 (385)
T KOG1034|consen 202 DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPG 279 (385)
T ss_pred cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecc
Confidence 9999999986321100 00 266667777665 5789998889999999863
Q ss_pred CCCCC------C-------eeecCCCCcEEEEEEe-CCCCcEEEEEeCCCeEEEEECCCCcee--Eeec---CCCCeEEE
Q 018784 133 RPDAP------P-------REVGNSSGSIRTVAWL-HSDQTILSSCTDSGGVRLWDARSGKIV--QTLE---TKSPVTSA 193 (350)
Q Consensus 133 ~~~~~------~-------~~~~~~~~~v~~~~~~-~~~~~~~~s~~~dg~i~iwd~~~~~~~--~~~~---~~~~v~~~ 193 (350)
+-... . ....-..+.++.+.|. .+.+.+++.|...|+|.+||++...+. .++. ....|...
T Consensus 280 kl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~ 359 (385)
T KOG1034|consen 280 KLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQT 359 (385)
T ss_pred hhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeee
Confidence 21111 0 0111123445555553 345678888889999999999887653 2222 23568899
Q ss_pred EEecCCcEEE-EEcCCcEEEEEC
Q 018784 194 EVSRDGRYIT-TADGSSVKFWDA 215 (350)
Q Consensus 194 ~~~~~~~~l~-~~~~~~i~vwd~ 215 (350)
+|+.|+.+|+ ..+++.|.-||-
T Consensus 360 sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 360 SFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred eecccCcEEEEEeCCCcEEEEEe
Confidence 9999998875 457788888884
No 174
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=3.6e-18 Score=148.54 Aligned_cols=247 Identities=17% Similarity=0.163 Sum_probs=176.6
Q ss_pred ceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccC--ccCCeEEEEECCCCcEEEEeeCCCeE
Q 018784 8 VPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG--HKGAVWSCCLDANALFSASGSADFTA 85 (350)
Q Consensus 8 ~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~g--H~~~V~~v~~~~~~~~l~s~s~Dg~v 85 (350)
.-.++.+|..+|.++.|+|..++ .+.+.|.||++++-|+++...-..+.- -......+.|+.+...++.+..=|..
T Consensus 226 ~v~~f~~hs~~Vs~l~F~P~n~s--~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f 303 (498)
T KOG4328|consen 226 GVYLFTPHSGPVSGLKFSPANTS--QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNF 303 (498)
T ss_pred ceEEeccCCccccceEecCCChh--heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccce
Confidence 34557899999999999996654 788899999999999987654333332 33344566677777777777777899
Q ss_pred EEeeCCCCCe-eeee-eccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCCCCCC---eeecCCCCcEEEEEEeCCCCc
Q 018784 86 KLWDALTGDE-KHSF-EHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWLHSDQT 159 (350)
Q Consensus 86 ~vWd~~~~~~-~~~~-~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~ 159 (350)
-+||..+... ...+ -|...|++++++|. ..+|+|+|-|++++|||+..-.... .....|...|.+..|+|.++.
T Consensus 304 ~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt 383 (498)
T KOG4328|consen 304 NVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT 383 (498)
T ss_pred EEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc
Confidence 9999877653 3222 47789999999995 5688999999999999987533222 334578888999999998888
Q ss_pred EEEEEeCCCeEEEEECC----CCceeEeecCCC------CeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCC
Q 018784 160 ILSSCTDSGGVRLWDAR----SGKIVQTLETKS------PVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPC 228 (350)
Q Consensus 160 ~~~s~~~dg~i~iwd~~----~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~ 228 (350)
++.+ ..|..|+|||.. .-.+..++.+.. ......|.|+..+++.+. -..|.|+|...++.+..+..+.
T Consensus 384 l~TT-~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~ 462 (498)
T KOG4328|consen 384 LLTT-CQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPE 462 (498)
T ss_pred eEee-ccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcc
Confidence 5555 567899999983 334555665532 234467999988888775 4579999998888776665554
Q ss_pred CC---ceeEecCCCCcEEEEecCCCeEEEEEc
Q 018784 229 NT---ESASLEPKLGNIFIAGGEDMWVHVFDF 257 (350)
Q Consensus 229 ~~---~~~~~~~~~~~~l~sg~~d~~i~v~d~ 257 (350)
.. ....++|....+++-|+.-|.|+||--
T Consensus 463 ~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 463 SSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ccccccceeecccccceeccCCccceEEEEec
Confidence 32 233455543334555556778888853
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=2.8e-18 Score=146.75 Aligned_cols=203 Identities=18% Similarity=0.295 Sum_probs=151.3
Q ss_pred eccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCCCe-------ee-eeeccccEeEEEEcCCC-CeEEEeeCCCe
Q 018784 56 TFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTGDE-------KH-SFEHKHIVRACAFSEDT-HLLLTGGFEKI 125 (350)
Q Consensus 56 ~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~-------~~-~~~h~~~V~~~~~~~~~-~~l~sg~~d~~ 125 (350)
.+.||+++|.-++|+| +...+||||.|.+|+||++..+-. +. ...|...|--++|||.. +.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4589999999999987 567899999999999999764422 22 23599999999999965 57789999999
Q ss_pred EEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCC--CeEEEEEecCCcEEE
Q 018784 126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS--PVTSAEVSRDGRYIT 203 (350)
Q Consensus 126 v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~ 203 (350)
|.+||+.++...... . |...|+++.|+. ++.++++...|.+|||||.++++.+.....+. .-..+.|-.++++++
T Consensus 156 v~iWnv~tgeali~l-~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITL-D-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred EEEEeccCCceeeec-C-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 999999987765443 2 899999999986 45566677789999999999999988875443 334456778888887
Q ss_pred EE----cCCcEEEEECCCcceeeee-ecC-CCCceeEec-CCCCcEEEEecCCCeEEEEEcccCe
Q 018784 204 TA----DGSSVKFWDANHFGLVKGY-NMP-CNTESASLE-PKLGNIFIAGGEDMWVHVFDFHTGE 261 (350)
Q Consensus 204 ~~----~~~~i~vwd~~~~~~~~~~-~~~-~~~~~~~~~-~~~~~~l~sg~~d~~i~v~d~~~~~ 261 (350)
++ +++.+-+||.......-.+ .+. .+.....|. +...-++++|-.|+.||.|.+.+..
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 76 4678999998765433221 111 122233333 3334467788889999999986544
No 176
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=9.8e-17 Score=149.83 Aligned_cols=288 Identities=18% Similarity=0.225 Sum_probs=202.6
Q ss_pred eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC----CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEe
Q 018784 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET----GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW 88 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~----~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vW 88 (350)
.-|+.++.+++++| .++++|+|-.||.|.+|..-. ..-.+.|.-|.+.|.+++|+++|.+|.|||..|-+.+|
T Consensus 202 ~~Htf~~t~~~~sp---n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~W 278 (792)
T KOG1963|consen 202 VHHTFNITCVALSP---NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLW 278 (792)
T ss_pred hhhcccceeEEecc---ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEE
Confidence 36888899999987 899999999999999998432 22345677899999999999999999999999999999
Q ss_pred eCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee----------ecCCCCcEEEEEEeCCCC
Q 018784 89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE----------VGNSSGSIRTVAWLHSDQ 158 (350)
Q Consensus 89 d~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~ 158 (350)
..++++....-.-...|..+.++||+.+.+....|..|.+-.+.+-...... .....+-.+.+.+.| ..
T Consensus 279 q~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~ 357 (792)
T KOG1963|consen 279 QLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RT 357 (792)
T ss_pred eecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CC
Confidence 9999884333345678999999999999999999999998876432211100 001122334455544 33
Q ss_pred cEEEEEeCCCeEEEEECCCCceeEeecC------------CCCeEEEEEecCCcEEEEEc---------CC--cEEEEEC
Q 018784 159 TILSSCTDSGGVRLWDARSGKIVQTLET------------KSPVTSAEVSRDGRYITTAD---------GS--SVKFWDA 215 (350)
Q Consensus 159 ~~~~s~~~dg~i~iwd~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~---------~~--~i~vwd~ 215 (350)
..++-++..+.|.+||+.+-+.+..++. +-+++.+..+-.|.++++.. ++ .+++|--
T Consensus 358 ~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~ 437 (792)
T KOG1963|consen 358 NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQY 437 (792)
T ss_pred CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEE
Confidence 4455567889999999987765554431 12456666677799988752 22 5788964
Q ss_pred CC----cceeeeeecCCCC---ceeEecCCCCcEEEEecCCCeEEEEEcccC----------eeEEeecCCCcCEEEEEE
Q 018784 216 NH----FGLVKGYNMPCNT---ESASLEPKLGNIFIAGGEDMWVHVFDFHTG----------EQIGCNKGHHGPVHCVRF 278 (350)
Q Consensus 216 ~~----~~~~~~~~~~~~~---~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~----------~~~~~~~~h~~~v~~l~~ 278 (350)
.. +.+......|... ..+..++.....+++++.|+.+++|-+..- .+...-..|..++.+++|
T Consensus 438 n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f 517 (792)
T KOG1963|consen 438 NPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF 517 (792)
T ss_pred cCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence 32 3333334444322 223333333348999999999999988322 122233357889999999
Q ss_pred cCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784 279 SPGGESYASGSEDGTIRIWQTNPPNHE 305 (350)
Q Consensus 279 sp~~~~lasgs~Dg~v~vw~~~~~~~~ 305 (350)
+.||. +++.|.|++|-+||.......
T Consensus 518 s~dGs-lla~s~~~~Itiwd~~~~~~l 543 (792)
T KOG1963|consen 518 SQDGS-LLAVSFDDTITIWDYDTKNEL 543 (792)
T ss_pred cCCCc-EEEEecCCEEEEecCCChhhh
Confidence 99996 455678889999999874333
No 177
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1e-18 Score=167.08 Aligned_cols=244 Identities=15% Similarity=0.234 Sum_probs=184.0
Q ss_pred ceeEEEecccCCCc-cEEEEEeCCCCeeEeeCCC------CceeeeccCccCCeEEEEECCCC-cEEEEeeCCCeEEEee
Q 018784 18 PVVDLFYSPITPDG-FFLVSASKDSSPMLRNGET------GDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWD 89 (350)
Q Consensus 18 ~v~~~~~~~~s~dg-~~lasgs~d~~v~iw~~~~------~~~~~~l~gH~~~V~~v~~~~~~-~~l~s~s~Dg~v~vWd 89 (350)
.-+.++|.++-.+. .++|.|..||.|.+||... -+.+.++..|++.|+.+.|++.. .+||+|+.||.|.|||
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWD 145 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWD 145 (1049)
T ss_pred cceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEec
Confidence 44567776643221 3689999999999999754 24466788999999999999865 4999999999999999
Q ss_pred CCCCCeeeee---eccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCCCCCCeeec-CCCCcEEEEEEeCCCCcEEEEE
Q 018784 90 ALTGDEKHSF---EHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVG-NSSGSIRTVAWLHSDQTILSSC 164 (350)
Q Consensus 90 ~~~~~~~~~~---~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~s~ 164 (350)
+...+..... .-.+.|.+++|+.. .+.|++++.++.+.|||++..+......- .....+..++|.|+.-..++.+
T Consensus 146 lnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~A 225 (1049)
T KOG0307|consen 146 LNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVA 225 (1049)
T ss_pred cCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeee
Confidence 9875544443 34567999999874 56788999999999999987644333221 1224577889988877766666
Q ss_pred eCCC---eEEEEECCCC-ceeEeec-CCCCeEEEEEecCC-cEE-EEEcCCcEEEEECCCcceeeeeecCCC-CceeEec
Q 018784 165 TDSG---GVRLWDARSG-KIVQTLE-TKSPVTSAEVSRDG-RYI-TTADGSSVKFWDANHFGLVKGYNMPCN-TESASLE 236 (350)
Q Consensus 165 ~~dg---~i~iwd~~~~-~~~~~~~-~~~~v~~~~~~~~~-~~l-~~~~~~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~ 236 (350)
++|. .|.+||+|.- .+++.+. +...|.++.|++.+ ++| .++.|+.|.+|+.++...+..+....+ ...+.|+
T Consensus 226 s~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~ 305 (1049)
T KOG0307|consen 226 SGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWC 305 (1049)
T ss_pred cCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeec
Confidence 6663 6999999865 4556664 45789999999866 554 456799999999999877766554332 3456788
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCe
Q 018784 237 PKLGNIFIAGGEDMWVHVFDFHTGE 261 (350)
Q Consensus 237 ~~~~~~l~sg~~d~~i~v~d~~~~~ 261 (350)
+.+..++++.+-||+|-||.+..+.
T Consensus 306 pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 306 PRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCcchhhhheeccceeeeeeecCC
Confidence 8888999999999999999987654
No 178
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.4e-18 Score=148.57 Aligned_cols=293 Identities=17% Similarity=0.209 Sum_probs=216.3
Q ss_pred cccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeec-cCccCCeEEEEECC--CCcEEEEeeC
Q 018784 5 KVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF-EGHKGAVWSCCLDA--NALFSASGSA 81 (350)
Q Consensus 5 ~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l-~gH~~~V~~v~~~~--~~~~l~s~s~ 81 (350)
++.+...+.+|.+-|..|.|+. .|..|+|||.|..+.+||=.++.....+ .||...|.-..|-| +.+.+++.+.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~---~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~ 207 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQ---RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSR 207 (559)
T ss_pred HhhhhhcccCCCCccceeeecc---cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccc
Confidence 3445556689999999999996 8999999999999999998887776665 57998887666644 4578899999
Q ss_pred CCeEEEeeCCC-CCee---eeeeccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCC--eeecCCCC---cEEEE
Q 018784 82 DFTAKLWDALT-GDEK---HSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPP--REVGNSSG---SIRTV 151 (350)
Q Consensus 82 Dg~v~vWd~~~-~~~~---~~~~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~--~~~~~~~~---~v~~~ 151 (350)
||.||+=.+.. +.+. ....|.+.|.-++.-|+. .-|++++.|+.+.-+|+....... ........ ...++
T Consensus 208 dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~I 287 (559)
T KOG1334|consen 208 DGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTI 287 (559)
T ss_pred cCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeE
Confidence 99999987643 3322 233699999999998854 668899999999999986543221 11122222 35667
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEECCCCce------eEee-------cCCCCeEEEEEecC-CcEEEEEcCCcEEEEECCC
Q 018784 152 AWLHSDQTILSSCTDSGGVRLWDARSGKI------VQTL-------ETKSPVTSAEVSRD-GRYITTADGSSVKFWDANH 217 (350)
Q Consensus 152 ~~~~~~~~~~~s~~~dg~i~iwd~~~~~~------~~~~-------~~~~~v~~~~~~~~-~~~l~~~~~~~i~vwd~~~ 217 (350)
+..|.....+++++.|..+++||.+.-.. +..+ .....|+.+.++.+ +.++++..|-.|.++...-
T Consensus 288 a~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~ 367 (559)
T KOG1334|consen 288 AVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSM 367 (559)
T ss_pred ecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccc
Confidence 76676777889999999999999875321 1221 12346889999954 5778888888899884321
Q ss_pred --c----------ceeee-eecCCCC---ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCC
Q 018784 218 --F----------GLVKG-YNMPCNT---ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPG 281 (350)
Q Consensus 218 --~----------~~~~~-~~~~~~~---~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~ 281 (350)
+ ..++. |..+.+. ..+-|..+..+++++|+.-|.|.+|+-.+++.+..+.+-..-|+||.-+|-
T Consensus 368 ~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~ 447 (559)
T KOG1334|consen 368 GDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH 447 (559)
T ss_pred ccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC
Confidence 1 11111 3333332 233455445689999999999999999999998888876668999999999
Q ss_pred CCEEEEecCCCcEEEecCC
Q 018784 282 GESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 282 ~~~lasgs~Dg~v~vw~~~ 300 (350)
-+.|||.+-|..|+||.-.
T Consensus 448 ~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 448 LPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred CchhhccCCccceeeecCC
Confidence 9999999999999999753
No 179
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.78 E-value=4.3e-17 Score=151.38 Aligned_cols=235 Identities=19% Similarity=0.164 Sum_probs=163.2
Q ss_pred CCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC---CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCe
Q 018784 40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL 116 (350)
Q Consensus 40 d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D---g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~ 116 (350)
+..+.|||..... ...+..|...+...+|+|+++.++..+.+ ..|.+||+.+++........+....++|+|+|+.
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~ 261 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSR 261 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCE
Confidence 4678999975544 45677888899999999999988877654 4799999988764333223333457899999998
Q ss_pred EEEee-CCCeEEEE--ECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC-ceeEeecCCCCeEE
Q 018784 117 LLTGG-FEKILRIF--DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTS 192 (350)
Q Consensus 117 l~sg~-~d~~v~vw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~ 192 (350)
|+.++ .++.+.|| |+..+. ......+...+....|++++..++++...++...||++... .....+... . ..
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~-~-~~ 337 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR-G-YS 337 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-C-CC
Confidence 88764 67877666 554332 23333455567788999877777777667788888876432 222223222 2 45
Q ss_pred EEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcc--cCeeEEeecCCC
Q 018784 193 AEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH--TGEQIGCNKGHH 270 (350)
Q Consensus 193 ~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~--~~~~~~~~~~h~ 270 (350)
..|+|+|++++......+.+||+.++..... ..........+.| ++++++.++.++.+.+|.+. +|+.+..+.+|.
T Consensus 338 ~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~~l-t~~~~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~ 415 (429)
T PRK01742 338 AQISADGKTLVMINGDNVVKQDLTSGSTEVL-SSTFLDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD 415 (429)
T ss_pred ccCCCCCCEEEEEcCCCEEEEECCCCCeEEe-cCCCCCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCCC
Confidence 6799999988766555677799987654321 1111223445655 68899999889988888763 577888888888
Q ss_pred cCEEEEEEcCC
Q 018784 271 GPVHCVRFSPG 281 (350)
Q Consensus 271 ~~v~~l~~sp~ 281 (350)
+.+...+|+|-
T Consensus 416 g~~~~p~wsp~ 426 (429)
T PRK01742 416 GQVKFPAWSPY 426 (429)
T ss_pred CCCCCcccCCC
Confidence 88999999984
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=7.8e-17 Score=132.95 Aligned_cols=245 Identities=16% Similarity=0.239 Sum_probs=172.1
Q ss_pred ceeEEEecccCCCccEEEEEeC----CCCeeEee--CCCCceeeec-cCccCCeEEEEECCCC-----cEEEEeeCCCeE
Q 018784 18 PVVDLFYSPITPDGFFLVSASK----DSSPMLRN--GETGDWIGTF-EGHKGAVWSCCLDANA-----LFSASGSADFTA 85 (350)
Q Consensus 18 ~v~~~~~~~~s~dg~~lasgs~----d~~v~iw~--~~~~~~~~~l-~gH~~~V~~v~~~~~~-----~~l~s~s~Dg~v 85 (350)
+++++.|+.....+..||.||. .++|.|-. .++++.+..- -.|.-+++.+.|.|+. .+|||. +..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeE
Confidence 5677888755333568899984 45566644 3455554211 2588899999998875 467765 5589
Q ss_pred EEeeCCCCCe----eeee------eccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCC--CCeeecCCCCcEEEEE
Q 018784 86 KLWDALTGDE----KHSF------EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSGSIRTVA 152 (350)
Q Consensus 86 ~vWd~~~~~~----~~~~------~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~--~~~~~~~~~~~v~~~~ 152 (350)
|+|.+...+. ...+ .+..++++.+|+. +-+++.+.+-|-+..|||++.+.. ...++-.|...|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 9998763221 1112 1445678888875 668899999999999999987532 3455667899999999
Q ss_pred EeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC----CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCC
Q 018784 153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC 228 (350)
Q Consensus 153 ~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~ 228 (350)
|...+..++++.+.||.+|++|+|.-+.-..+.. ..+...++|++
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnk------------------------------- 252 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNK------------------------------- 252 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCc-------------------------------
Confidence 9987788999999999999999987653222221 12333333333
Q ss_pred CCceeEecCCCCcEEEEecCCC-eEEEEEcccC-eeEEeecCCCcCEEEEEEcCCC-CEEEEecCCCcEEEecCCCCCc
Q 018784 229 NTESASLEPKLGNIFIAGGEDM-WVHVFDFHTG-EQIGCNKGHHGPVHCVRFSPGG-ESYASGSEDGTIRIWQTNPPNH 304 (350)
Q Consensus 229 ~~~~~~~~~~~~~~l~sg~~d~-~i~v~d~~~~-~~~~~~~~h~~~v~~l~~sp~~-~~lasgs~Dg~v~vw~~~~~~~ 304 (350)
++.+++++-..|. +|.+.|++.. ..+..+++|.+.|+.++|.|.. ..++|++.|..+.+||+.....
T Consensus 253 ---------qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 253 ---------QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred ---------CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccc
Confidence 2344444444433 4777777753 5678899999999999999974 6799999999999999976554
No 181
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.77 E-value=2.6e-16 Score=151.40 Aligned_cols=260 Identities=16% Similarity=0.231 Sum_probs=183.2
Q ss_pred eeCCCCceeeeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCC-------Ceeeeee-ccccEeEEEEcCCCCe
Q 018784 46 RNGETGDWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTG-------DEKHSFE-HKHIVRACAFSEDTHL 116 (350)
Q Consensus 46 w~~~~~~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~-------~~~~~~~-h~~~V~~~~~~~~~~~ 116 (350)
|+. .|..+..|..|+..|..++.++ ++.+|+|||.||+||+|+...- +...++. -.+.+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 543 5778889999999998888765 5599999999999999997432 1222333 4567999999999999
Q ss_pred EEEeeCCCeEEEEECCCCCCCCe-------eecCCCCcEEEEE-EeCCCCc-EEEEEeCCCeEEEEECCCCceeEeecC-
Q 018784 117 LLTGGFEKILRIFDLNRPDAPPR-------EVGNSSGSIRTVA-WLHSDQT-ILSSCTDSGGVRLWDARSGKIVQTLET- 186 (350)
Q Consensus 117 l~sg~~d~~v~vwd~~~~~~~~~-------~~~~~~~~v~~~~-~~~~~~~-~~~s~~~dg~i~iwd~~~~~~~~~~~~- 186 (350)
+|.++.||.|++.+++....... .-....+.+..+. +....+. .++.+..-+.|..||+++......++.
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~ 1192 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ 1192 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC
Confidence 99999999999999875211111 1112344555553 3333344 677777888999999998877777664
Q ss_pred --CCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCCC--ceeEecCCCC--cEEEEecC--CCeEEEEEc
Q 018784 187 --KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNT--ESASLEPKLG--NIFIAGGE--DMWVHVFDF 257 (350)
Q Consensus 187 --~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~l~sg~~--d~~i~v~d~ 257 (350)
++.|++++++|.+.+++.|. .|.+-+||+|=..++.....+... .-..+++..+ ...++++. .+.|-+|++
T Consensus 1193 ~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1193 LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 57899999999999988775 678999999977777776665432 2233333333 55555554 678999999
Q ss_pred ccCeeEEeecCC-C-------c-----------CEEEEEEcCCCCEEEEecCCCcEEEecCCCCCccc
Q 018784 258 HTGEQIGCNKGH-H-------G-----------PVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEE 306 (350)
Q Consensus 258 ~~~~~~~~~~~h-~-------~-----------~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~ 306 (350)
.+|....++..- . . .....++...+.++.+|+.|..|+.||...+....
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss 1340 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISS 1340 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccccc
Confidence 988665544321 1 1 11223333345789999999999999998777663
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.77 E-value=1.8e-16 Score=147.37 Aligned_cols=260 Identities=15% Similarity=0.166 Sum_probs=188.2
Q ss_pred CCCeeEeeCCCC-ceeeeccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCCCe--ee-----eeeccccEeEEEE
Q 018784 40 DSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTGDE--KH-----SFEHKHIVRACAF 110 (350)
Q Consensus 40 d~~v~iw~~~~~-~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~--~~-----~~~h~~~V~~~~~ 110 (350)
++.+.||+++.. .+...+.. ...|.++.|+| +..++|.|..+|.|-+||+..+.. .. ...|..+|..+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 346889998765 44445543 46789999987 567899999999999999876654 22 2248888999999
Q ss_pred cCCC--CeEEEeeCCCeEEEEECCCCCCCCee-----ec------CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEE---E
Q 018784 111 SEDT--HLLLTGGFEKILRIFDLNRPDAPPRE-----VG------NSSGSIRTVAWLHSDQTILSSCTDSGGVRLW---D 174 (350)
Q Consensus 111 ~~~~--~~l~sg~~d~~v~vwd~~~~~~~~~~-----~~------~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iw---d 174 (350)
..+. .-+++++.||.|..|+++.-..+... .. .....+++++|.+.+...++.|+++|.|.-- +
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 6654 44999999999999987643332211 11 2234578889988888889999999998873 3
Q ss_pred CCCCc-----ee-EeecCCCCeEEEEEecCC-cEEEEEcCCcEEEEECC-CcceeeeeecCCC-CceeEecCCCCcEEEE
Q 018784 175 ARSGK-----IV-QTLETKSPVTSAEVSRDG-RYITTADGSSVKFWDAN-HFGLVKGYNMPCN-TESASLEPKLGNIFIA 245 (350)
Q Consensus 175 ~~~~~-----~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~~~i~vwd~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s 245 (350)
.+.+. .. ....+..++..+.++|=+ +++.++.|-++++|... ...++..+..... .....++|....+|++
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 33322 11 222345789999999855 44555558899999876 4444444444333 4556778877789999
Q ss_pred ecCCCeEEEEEcccC--eeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 246 GGEDMWVHVFDFHTG--EQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 246 g~~d~~i~v~d~~~~--~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
+..||.|.+||+... +++.....+....+.+.|++++++|+.|...|.+.+|++.
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 999999999999654 3444454456667888999999999999999999999985
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.75 E-value=2.9e-16 Score=145.95 Aligned_cols=241 Identities=16% Similarity=0.107 Sum_probs=172.4
Q ss_pred CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCce--ee----eccCccCCeEEEEECCCC--cEEEEeeCCCeEEE
Q 018784 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDW--IG----TFEGHKGAVWSCCLDANA--LFSASGSADFTAKL 87 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~--~~----~l~gH~~~V~~v~~~~~~--~~l~s~s~Dg~v~v 87 (350)
..+|.++.|+|+.|. +||.|+.+|+|.+||...+.. .. ....|..+|+.+.|-.+. .-++|+|.||.|..
T Consensus 242 ~s~v~~~~f~p~~p~--ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~ 319 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPN--LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICS 319 (555)
T ss_pred CCceeEEEeccCCcc--eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEee
Confidence 558999999998776 999999999999999876544 22 224589999999996544 44899999999999
Q ss_pred eeCCCCCe------eeeeec-------cccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCC-------CCeeecCCCC
Q 018784 88 WDALTGDE------KHSFEH-------KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDA-------PPREVGNSSG 146 (350)
Q Consensus 88 Wd~~~~~~------~~~~~h-------~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~-------~~~~~~~~~~ 146 (350)
|++..-.. .....| ...+.+++|.+ +-..++.|..+|.|..-.....+. .......|.+
T Consensus 320 W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 320 WDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 98643221 111112 23578899988 456788999999987743322111 1223456788
Q ss_pred cEEEEEEeCCCCcEEEEEeCCCeEEEEECC-CCceeEeecCC-CCeEEEEEecCCc--EEEEEcCCcEEEEECCCc--ce
Q 018784 147 SIRTVAWLHSDQTILSSCTDSGGVRLWDAR-SGKIVQTLETK-SPVTSAEVSRDGR--YITTADGSSVKFWDANHF--GL 220 (350)
Q Consensus 147 ~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~-~~~~~~~~~~~-~~v~~~~~~~~~~--~l~~~~~~~i~vwd~~~~--~~ 220 (350)
.|+++.++|-...++++++ |.+++||... ...++..+... ..+++++|+|--- ++++..+|.+.+||+... .+
T Consensus 400 ~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred ceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 9999999988888888887 7899999987 55666665544 4499999999652 334445899999998653 34
Q ss_pred eeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEccc
Q 018784 221 VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (350)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~ 259 (350)
+.++..........+.+..++++++|...|.+++|++..
T Consensus 479 v~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 479 VLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 444433323333444455689999999999999999853
No 184
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=1.5e-16 Score=131.16 Aligned_cols=220 Identities=19% Similarity=0.302 Sum_probs=148.8
Q ss_pred CCCCeeEeeCCC--Cce-eeeccCccCCeEEEEECCCC-cEEEEeeCC-------CeEEEeeCCCCCee---------ee
Q 018784 39 KDSSPMLRNGET--GDW-IGTFEGHKGAVWSCCLDANA-LFSASGSAD-------FTAKLWDALTGDEK---------HS 98 (350)
Q Consensus 39 ~d~~v~iw~~~~--~~~-~~~l~gH~~~V~~v~~~~~~-~~l~s~s~D-------g~v~vWd~~~~~~~---------~~ 98 (350)
.|+.|.+.+.+. ++. .+.|..|.+.|+.++-+|.. ..|+|.=.| ..+-||.+...... ..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 477888766543 333 34678889999999998854 556665332 35789987543221 12
Q ss_pred e--eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee-----cCCCCcEEEEEEeC-CCCcEEEEEeCCCeE
Q 018784 99 F--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-----GNSSGSIRTVAWLH-SDQTILSSCTDSGGV 170 (350)
Q Consensus 99 ~--~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~~~~s~~~dg~i 170 (350)
+ .+-+.+.|+.|.|++..+++-. |..|.+|++.......... ..+.....+-+|+| .++..+++. .|+++
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl 195 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTL 195 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcE
Confidence 2 2445799999999999888766 8899999997654421111 12233455666776 345555543 45788
Q ss_pred EEEECCCCceeEeecC--CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC
Q 018784 171 RLWDARSGKIVQTLET--KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248 (350)
Q Consensus 171 ~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 248 (350)
..||+|+.+....+.. ...+..+.|+|+ ...+|++|+.
T Consensus 196 ~~~D~RT~~~~~sI~dAHgq~vrdlDfNpn----------------------------------------kq~~lvt~gD 235 (370)
T KOG1007|consen 196 QFWDLRTMKKNNSIEDAHGQRVRDLDFNPN----------------------------------------KQHILVTCGD 235 (370)
T ss_pred EEEEccchhhhcchhhhhcceeeeccCCCC----------------------------------------ceEEEEEcCC
Confidence 8888877655444431 223444444443 3467778888
Q ss_pred CCeEEEEEcccC-eeEEeecCCCcCEEEEEEcCC-CCEEEEecCCCcEEEecCC
Q 018784 249 DMWVHVFDFHTG-EQIGCNKGHHGPVHCVRFSPG-GESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 249 d~~i~v~d~~~~-~~~~~~~~h~~~v~~l~~sp~-~~~lasgs~Dg~v~vw~~~ 300 (350)
|+.|++||++.- .++..+.+|.-+|++++|+|. .+++.|||.|..|.+|...
T Consensus 236 dgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~ 289 (370)
T KOG1007|consen 236 DGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCAS 289 (370)
T ss_pred CccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecc
Confidence 888888887653 567788899999999999985 6788999999999999764
No 185
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.74 E-value=2.9e-16 Score=131.40 Aligned_cols=202 Identities=16% Similarity=0.287 Sum_probs=156.8
Q ss_pred ccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCC------CC------CeeecCCCCcEEEEEEeC------CCCcEEEEE
Q 018784 103 HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD------AP------PREVGNSSGSIRTVAWLH------SDQTILSSC 164 (350)
Q Consensus 103 ~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~------~~------~~~~~~~~~~v~~~~~~~------~~~~~~~s~ 164 (350)
+....+.|+|||..|++-+.|..+++|++.... .+ ....-.....|...+|.+ ++..++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 456788999999999999999999999985211 00 011112345677777762 456778888
Q ss_pred eCCCeEEEEECCCCceeEeecCC------CCeEEEEEecCCcEEEEEcCCcEEEEEC-CCcceeeeee--------cCCC
Q 018784 165 TDSGGVRLWDARSGKIVQTLETK------SPVTSAEVSRDGRYITTADGSSVKFWDA-NHFGLVKGYN--------MPCN 229 (350)
Q Consensus 165 ~~dg~i~iwd~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~~~i~vwd~-~~~~~~~~~~--------~~~~ 229 (350)
+.|.-|++||.-+|+........ ....+++|+|||.+|.++..+.|++||+ |.++....+. ...-
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 99999999999999887666542 3567899999999999999999999999 4443222111 1122
Q ss_pred CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecC-CCcEEEecCCCCCc
Q 018784 230 TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSE-DGTIRIWQTNPPNH 304 (350)
Q Consensus 230 ~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~-Dg~v~vw~~~~~~~ 304 (350)
..+.+++|.+...+++|+....+-||.-..++++..+.+|.+.|+.++|.++|+.|.+|+. |-.|..||++....
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence 3455677877789999999999999999999999999999999999999999999999985 77899999875443
No 186
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4.2e-17 Score=144.95 Aligned_cols=163 Identities=20% Similarity=0.347 Sum_probs=121.1
Q ss_pred eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee--eccccEeEEEEcC--CCCeEEEeeCCCeEEEE
Q 018784 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF--EHKHIVRACAFSE--DTHLLLTGGFEKILRIF 129 (350)
Q Consensus 54 ~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~--~h~~~V~~~~~~~--~~~~l~sg~~d~~v~vw 129 (350)
...|.||++.|+++.|+.+|.+|+|||.|-.+.|||....+.++.+ .|...|.++.|-| +..++++|+.|..|++|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3578999999999999999999999999999999999888877776 5999999999988 56789999999999999
Q ss_pred ECCCC---------CCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCce-eEeecC----------CCC
Q 018784 130 DLNRP---------DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI-VQTLET----------KSP 189 (350)
Q Consensus 130 d~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~-~~~~~~----------~~~ 189 (350)
|+.+. .........|...|..++-.+.....+.++++||+|+=+|+|.... -..... --.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 99752 1222334556677777777777778999999999999999986321 111100 123
Q ss_pred eEEEEEecCC-cEE-EEEcCCcEEEEECC
Q 018784 190 VTSAEVSRDG-RYI-TTADGSSVKFWDAN 216 (350)
Q Consensus 190 v~~~~~~~~~-~~l-~~~~~~~i~vwd~~ 216 (350)
..++.++|.. .+| +++++--.++||.|
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 4455566543 233 33445566777653
No 187
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.73 E-value=7.4e-18 Score=156.17 Aligned_cols=244 Identities=20% Similarity=0.300 Sum_probs=179.8
Q ss_pred eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEEC
Q 018784 53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131 (350)
Q Consensus 53 ~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~ 131 (350)
.++.|.||.++|+|+.|+-.|.+++||+.|..||||..++..+.... .|.+.++.++.+.+..++++++.|..|++|.+
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl 261 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL 261 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence 34567899999999999999999999999999999999888887776 58899999999999999999999999999999
Q ss_pred CCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEe------ecCCCCeEEEEEecCCcE-EEE
Q 018784 132 NRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT------LETKSPVTSAEVSRDGRY-ITT 204 (350)
Q Consensus 132 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~------~~~~~~v~~~~~~~~~~~-l~~ 204 (350)
..+. +...+..|.+.|++++|+|-. +.++||++++||.+ -.+... +....-+.++.+..++.- ++.
T Consensus 262 ~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 262 PDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred CCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccc
Confidence 7644 445567899999999998743 66789999999987 111111 112233455555555543 334
Q ss_pred EcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCE
Q 018784 205 ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGES 284 (350)
Q Consensus 205 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 284 (350)
+.++.-+.|......... ..............+.++.-.+..+.+|++.+|.+++.+.+|...++.|.++|-+..
T Consensus 335 s~d~ea~n~e~~~l~~~~-----~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRS-----NLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred cCCcccccchhhHhhhhc-----cceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcH
Confidence 445555555432211000 000111111122356677777888999999999999999999999999999997655
Q ss_pred -EEEecCCCcEEEecCCCCCcccCC
Q 018784 285 -YASGSEDGTIRIWQTNPPNHEENH 308 (350)
Q Consensus 285 -lasgs~Dg~v~vw~~~~~~~~~~~ 308 (350)
..+++.||...|||+-.+.....+
T Consensus 410 i~msag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred hhhhccCCCceEeeecccCCcceee
Confidence 459999999999998655554433
No 188
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=8.7e-15 Score=137.00 Aligned_cols=294 Identities=20% Similarity=0.266 Sum_probs=206.3
Q ss_pred ccccceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCC---cEEEEee
Q 018784 4 RKVAVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA---LFSASGS 80 (350)
Q Consensus 4 ~~~~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~---~~l~s~s 80 (350)
.+..+|..+.|-...-..-.|+ +|+++++. ..+.+|.||...++++++.|++|..++..+.+.+.. .++.+.+
T Consensus 4 e~~~~~~~lgg~n~~~~~avfS---nD~k~l~~-~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~s 79 (792)
T KOG1963|consen 4 ESGGKPALLGGRNGNKSPAVFS---NDAKFLFL-CTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCS 79 (792)
T ss_pred ccccceeeeccccceecccccc---cCCcEEEE-eeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEe
Confidence 4455555565544433333355 59998875 455889999999999999999999999999987654 4677999
Q ss_pred CCCeEEEeeCCCCCeee---------------------------------------------------------------
Q 018784 81 ADFTAKLWDALTGDEKH--------------------------------------------------------------- 97 (350)
Q Consensus 81 ~Dg~v~vWd~~~~~~~~--------------------------------------------------------------- 97 (350)
.||+|++||-..+..+.
T Consensus 80 l~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~ 159 (792)
T KOG1963|consen 80 LDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKE 159 (792)
T ss_pred cCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhh
Confidence 99999999854322100
Q ss_pred -------------------------ee----------------eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC---
Q 018784 98 -------------------------SF----------------EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR--- 133 (350)
Q Consensus 98 -------------------------~~----------------~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~--- 133 (350)
.+ .|...+++.++||++.++++|..||.|.+|.-..
T Consensus 160 ~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~ 239 (792)
T KOG1963|consen 160 HQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD 239 (792)
T ss_pred hcCCccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc
Confidence 00 0333467899999999999999999999995322
Q ss_pred CCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEE-EEcCCcEEE
Q 018784 134 PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT-TADGSSVKF 212 (350)
Q Consensus 134 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~~i~v 212 (350)
.........-|...|.+++|++ ++..++||+..+.+-+|.+.+++...--...++|..+.++||+.+.+ ...|..|.+
T Consensus 240 ~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 240 DSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred ccccceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence 2333455566888999999986 45677799999999999999998433334578999999999997654 456778777
Q ss_pred EECCCcce---eeeeecC---------CCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec-----------CC
Q 018784 213 WDANHFGL---VKGYNMP---------CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK-----------GH 269 (350)
Q Consensus 213 wd~~~~~~---~~~~~~~---------~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~-----------~h 269 (350)
..+.+... +.++..+ .......+.| ..+.++-.+.-+.|.+||+.+-+.+..+. .+
T Consensus 319 i~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~ 397 (792)
T KOG1963|consen 319 IKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNI 397 (792)
T ss_pred EeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCccee
Confidence 76544332 2222221 1123344555 34677888889999999997765543321 23
Q ss_pred CcCEEEEEEcCCCCEEEEec--------CCC--cEEEecCCCCC
Q 018784 270 HGPVHCVRFSPGGESYASGS--------EDG--TIRIWQTNPPN 303 (350)
Q Consensus 270 ~~~v~~l~~sp~~~~lasgs--------~Dg--~v~vw~~~~~~ 303 (350)
...+++++.+-.|.+++|.- .|| .+++|...+..
T Consensus 398 ~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 398 QVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred EEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 34578888888899999864 233 57889875443
No 189
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=3e-16 Score=135.63 Aligned_cols=201 Identities=20% Similarity=0.255 Sum_probs=131.7
Q ss_pred EEEEECCCCcEEEEeeCCCeEEEeeCCCCC-eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee-c
Q 018784 65 WSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV-G 142 (350)
Q Consensus 65 ~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~-~ 142 (350)
.+++++.+|..+++|+.||++|||+..... ......|...|.+++|+||+++|++-+.| ..+||++.++....... .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 578999999999999999999999955443 44445788999999999999999999999 99999998763332222 1
Q ss_pred CCCCcEEEEEEeCCC---C-cEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCc
Q 018784 143 NSSGSIRTVAWLHSD---Q-TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHF 218 (350)
Q Consensus 143 ~~~~~v~~~~~~~~~---~-~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~ 218 (350)
........|.|..++ . ++++....-+.|+.||+ .+|+-...
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~-----------------------------------~~w~~~~~ 271 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI-----------------------------------SLWSGSNF 271 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEe-----------------------------------eeeccccc
Confidence 111223334443221 1 11222222233333332 22222100
Q ss_pred ceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEee-cCCCcCEEEEEEcCCCCEEEEecCCCcEEEe
Q 018784 219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN-KGHHGPVHCVRFSPGGESYASGSEDGTIRIW 297 (350)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~-~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw 297 (350)
-..+.........+......+|++++.|+.||.|-+++..+.+.+... +.|...|+.+.|+|+.+++++-|.|..+.|-
T Consensus 272 l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 272 LRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred cchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 000000000112222222345788899999999999999887776544 5899999999999999999999999999988
Q ss_pred cCCC
Q 018784 298 QTNP 301 (350)
Q Consensus 298 ~~~~ 301 (350)
.+..
T Consensus 352 ~l~v 355 (398)
T KOG0771|consen 352 KLAV 355 (398)
T ss_pred EEee
Confidence 7644
No 190
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.72 E-value=2.5e-15 Score=144.82 Aligned_cols=283 Identities=18% Similarity=0.164 Sum_probs=189.8
Q ss_pred eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-----C--ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeE
Q 018784 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----G--DWIGTFEGHKGAVWSCCLDANALFSASGSADFTA 85 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~-----~--~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v 85 (350)
+.|+..|..++.++ +++.+++|||.||+|++|+... + +...++.--.+.+.++.+.+.+..+|.++.||.|
T Consensus 1045 ~Ehs~~v~k~a~s~--~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSS--EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred hhccccccceeecC--CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 57888999888776 5668999999999999999642 1 1222333234678888888999999999999999
Q ss_pred EEeeCCCCCeee-------eee--ccc-cEeEEEEcCC-CC-eEEEeeCCCeEEEEECCCCCCCC-eeecCCCCcEEEEE
Q 018784 86 KLWDALTGDEKH-------SFE--HKH-IVRACAFSED-TH-LLLTGGFEKILRIFDLNRPDAPP-REVGNSSGSIRTVA 152 (350)
Q Consensus 86 ~vWd~~~~~~~~-------~~~--h~~-~V~~~~~~~~-~~-~l~sg~~d~~v~vwd~~~~~~~~-~~~~~~~~~v~~~~ 152 (350)
++.++....... ..+ ..+ .|..-+|... .. .|+.+..-+.|..||+.+..... .......|.|++++
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~ 1202 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV 1202 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEE
Confidence 999886522111 111 122 2444455432 23 56677778889999987543221 12234567899998
Q ss_pred EeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC--CCCeEEEEEecC---CcEEEEE---cCCcEEEEECCCcceeeee
Q 018784 153 WLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET--KSPVTSAEVSRD---GRYITTA---DGSSVKFWDANHFGLVKGY 224 (350)
Q Consensus 153 ~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~---~~~l~~~---~~~~i~vwd~~~~~~~~~~ 224 (350)
..+. +..++.|+..|.+.+||+|=+.++..+.+ ..+++.+..+|- ....+++ ..+.|.+|++.++.+-..+
T Consensus 1203 idp~-~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl 1281 (1431)
T KOG1240|consen 1203 IDPW-CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL 1281 (1431)
T ss_pred ecCC-ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE
Confidence 7654 45888899999999999998888887775 467777777653 3344332 3467999999876543333
Q ss_pred ecC-----------CC----Cc----eeEecCCCCcEEEEecCCCeEEEEEcccCeeE----------------------
Q 018784 225 NMP-----------CN----TE----SASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI---------------------- 263 (350)
Q Consensus 225 ~~~-----------~~----~~----~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~---------------------- 263 (350)
-.. .+ +. ..+.....+..+++|+.|..|+.||....+..
T Consensus 1282 ~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~ 1361 (1431)
T KOG1240|consen 1282 WASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLST 1361 (1431)
T ss_pred EcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccc
Confidence 211 11 00 01111223567899999999999997432210
Q ss_pred -------------------E---------------eecCCCcCEEEEEEcCC-CCEEEEecCCCcEEEec
Q 018784 264 -------------------G---------------CNKGHHGPVHCVRFSPG-GESYASGSEDGTIRIWQ 298 (350)
Q Consensus 264 -------------------~---------------~~~~h~~~v~~l~~sp~-~~~lasgs~Dg~v~vw~ 298 (350)
. .-.+|..+|++|++... ..+|++++.||.|+||.
T Consensus 1362 i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1362 IPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 0 01357788888888754 35789999999999994
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=1.2e-14 Score=130.83 Aligned_cols=226 Identities=13% Similarity=0.141 Sum_probs=147.5
Q ss_pred EEEeeCCCeEEEeeCCC-CC--eeeeeeccccEeEEEEcCCCCeEEEee-CCCeEEEEECCC-CCCCCeeecCCCCcEEE
Q 018784 76 SASGSADFTAKLWDALT-GD--EKHSFEHKHIVRACAFSEDTHLLLTGG-FEKILRIFDLNR-PDAPPREVGNSSGSIRT 150 (350)
Q Consensus 76 l~s~s~Dg~v~vWd~~~-~~--~~~~~~h~~~V~~~~~~~~~~~l~sg~-~d~~v~vwd~~~-~~~~~~~~~~~~~~v~~ 150 (350)
.++...|+.|.+|++.+ ++ .+..+.+.+.+..++++|++++|++++ .++.|.+|++.. +...........+....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 45557899999999964 33 334445556678899999999987764 578899999863 22111111122335667
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEECCC-C---ceeEeecCCCCeEEEEEecCCcEEEEE--cCCcEEEEECCCcceeee-
Q 018784 151 VAWLHSDQTILSSCTDSGGVRLWDARS-G---KIVQTLETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKG- 223 (350)
Q Consensus 151 ~~~~~~~~~~~~s~~~dg~i~iwd~~~-~---~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~i~vwd~~~~~~~~~- 223 (350)
+++.++++.++++...++.|.+||+.+ + +.+..+........+.++|+++++.++ .++.|.+||+.+...+..
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 888877777777776789999999964 3 223333333456778899999887544 357899999976433211
Q ss_pred ----ee--cCCCCceeEecCCCCcEEEEec-CCCeEEEEEccc--Ce--eEEeecC------CCcCEEEEEEcCCCCEEE
Q 018784 224 ----YN--MPCNTESASLEPKLGNIFIAGG-EDMWVHVFDFHT--GE--QIGCNKG------HHGPVHCVRFSPGGESYA 286 (350)
Q Consensus 224 ----~~--~~~~~~~~~~~~~~~~~l~sg~-~d~~i~v~d~~~--~~--~~~~~~~------h~~~v~~l~~sp~~~~la 286 (350)
.. ....+..+.+.+ +++++.+.. .++.|.+|++.. +. .+..+.. +......+.|+|++++++
T Consensus 165 ~~~~~~~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ly 243 (330)
T PRK11028 165 EPAEVTTVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLY 243 (330)
T ss_pred CCCceecCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEE
Confidence 11 122334456665 466665555 489999999973 32 2333322 122345689999999888
Q ss_pred Eec-CCCcEEEecCCCC
Q 018784 287 SGS-EDGTIRIWQTNPP 302 (350)
Q Consensus 287 sgs-~Dg~v~vw~~~~~ 302 (350)
++. .++.|.+|++...
T Consensus 244 v~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 244 ACDRTASLISVFSVSED 260 (330)
T ss_pred EecCCCCeEEEEEEeCC
Confidence 775 4789999998543
No 192
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=7.7e-16 Score=127.13 Aligned_cols=196 Identities=16% Similarity=0.259 Sum_probs=153.0
Q ss_pred ccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc---eeeeccCccCCeEEEEECCCC-cEEEEeeCCCeEEEee
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---WIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWD 89 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~---~~~~l~gH~~~V~~v~~~~~~-~~l~s~s~Dg~v~vWd 89 (350)
.|-.|+++..++-..|. ++.+.|-|.++.|||++++. ..+.|-+|...|+-++|...+ ..|||.|.||+||++|
T Consensus 148 ~~~aPlTSFDWne~dp~--~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFD 225 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPN--LIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFD 225 (364)
T ss_pred ccCCcccccccccCCcc--eeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEE
Confidence 46678888888876554 99999999999999999863 467889999999999998754 5889999999999999
Q ss_pred CCCCCeeeee-ec---cccEeEEEEcCC-CCeEEEeeCC-CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784 90 ALTGDEKHSF-EH---KHIVRACAFSED-THLLLTGGFE-KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163 (350)
Q Consensus 90 ~~~~~~~~~~-~h---~~~V~~~~~~~~-~~~l~sg~~d-~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s 163 (350)
+...+....+ +. .....-++|+++ -+++|+-..| ..|.|-|++.+..+...+..|.+.|..++|.|.....+++
T Consensus 226 LR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 226 LRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred ecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeee
Confidence 8765533322 21 234566777764 4667775544 5688999998888888889999999999999999999999
Q ss_pred EeCCCeEEEEECCCCc------eeEeecCCCCeEEEEEec-CCcEEEEEcCCcEE
Q 018784 164 CTDSGGVRLWDARSGK------IVQTLETKSPVTSAEVSR-DGRYITTADGSSVK 211 (350)
Q Consensus 164 ~~~dg~i~iwd~~~~~------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~i~ 211 (350)
|++|..+.+||+.+.- ++.......+|+.+.|++ ...+++...++.+.
T Consensus 306 aGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~kkle 360 (364)
T KOG0290|consen 306 AGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFGKKLE 360 (364)
T ss_pred cCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEecCeee
Confidence 9999999999997532 233334567899999985 56777766655543
No 193
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.70 E-value=3e-15 Score=128.74 Aligned_cols=240 Identities=19% Similarity=0.303 Sum_probs=158.3
Q ss_pred CCeEEEEECCCCc-EEEEeeCCCeEEEeeCCCCCee------ee---e-eccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784 62 GAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEK------HS---F-EHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130 (350)
Q Consensus 62 ~~V~~v~~~~~~~-~l~s~s~Dg~v~vWd~~~~~~~------~~---~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd 130 (350)
.+|..+.|.++.. .+|||+.|..||+|-++.+... .. + .|...|+++.|+|+|.+|++|+.+|.|.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 6788899988776 9999999999999987654321 11 2 4889999999999999999999999999997
Q ss_pred CCCC------C---------CCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEE
Q 018784 131 LNRP------D---------APPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAE 194 (350)
Q Consensus 131 ~~~~------~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~ 194 (350)
.... . ...+....|...++.++|++ ++.++++++.|+++++||++.|+....+.. ...+.-++
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgva 172 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVA 172 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceee
Confidence 6510 0 01123345778899999985 566788889999999999999999888765 46788899
Q ss_pred EecCCcEEEE-EcCCcEEEEECCCcceeeeee------------------------cCCCCceeEecCCCCcEEEEecC-
Q 018784 195 VSRDGRYITT-ADGSSVKFWDANHFGLVKGYN------------------------MPCNTESASLEPKLGNIFIAGGE- 248 (350)
Q Consensus 195 ~~~~~~~l~~-~~~~~i~vwd~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~l~sg~~- 248 (350)
|.|-++++++ +.++..+.+.+...+.++... ++......+|.| +|.+|++.+.
T Consensus 173 wDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP-dG~llvtPag~ 251 (434)
T KOG1009|consen 173 WDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP-DGSLLVTPAGL 251 (434)
T ss_pred cchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC-CCcEEEcccce
Confidence 9998887765 345545555443322221111 111112234443 4666665442
Q ss_pred ---C-----CeEEEEEccc-CeeEEeecCCCcCEEEEEEcCC------------------CCEEEEecCCCcEEEecCCC
Q 018784 249 ---D-----MWVHVFDFHT-GEQIGCNKGHHGPVHCVRFSPG------------------GESYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 249 ---d-----~~i~v~d~~~-~~~~~~~~~h~~~v~~l~~sp~------------------~~~lasgs~Dg~v~vw~~~~ 301 (350)
+ +.-++|+-.. .++...+.+...++..++|+|- +-.+|.+.. ..|++||...
T Consensus 252 ~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~-~svyvydtq~ 330 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATK-NSVYVYDTQT 330 (434)
T ss_pred eeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeec-ceEEEecccc
Confidence 1 2234554332 2334455555666677777651 122444444 4799999866
Q ss_pred CCc
Q 018784 302 PNH 304 (350)
Q Consensus 302 ~~~ 304 (350)
...
T Consensus 331 ~~P 333 (434)
T KOG1009|consen 331 LEP 333 (434)
T ss_pred ccc
Confidence 443
No 194
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.69 E-value=1.4e-13 Score=124.32 Aligned_cols=272 Identities=14% Similarity=0.126 Sum_probs=173.5
Q ss_pred EEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcC
Q 018784 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSE 112 (350)
Q Consensus 33 ~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~ 112 (350)
++++-..++++.+.|..+.+.+..+....+.-..+.+++|++++..++.||.|.++|+.+.+.+.++.......++++++
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~ 87 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSP 87 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcC
Confidence 34566778999999999999999998654433346789999999999999999999999999888888777789999999
Q ss_pred CCCeEEEee-CCCeEEEEECCCCCCCCeeec------CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCcee--Ee
Q 018784 113 DTHLLLTGG-FEKILRIFDLNRPDAPPREVG------NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV--QT 183 (350)
Q Consensus 113 ~~~~l~sg~-~d~~v~vwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~--~~ 183 (350)
+|++++++. ..+.+.++|..+.+....... .....+..+..++....++++--+-+.|.+-|....+.+ ..
T Consensus 88 DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~ 167 (369)
T PF02239_consen 88 DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT 167 (369)
T ss_dssp TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE
T ss_pred CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee
Confidence 999998775 589999999876443222111 123456677666666656666666688888887765433 44
Q ss_pred ecCCCCeEEEEEecCCcEEEEE--cCCcEEEEECCCcceeeeee------------------------------------
Q 018784 184 LETKSPVTSAEVSRDGRYITTA--DGSSVKFWDANHFGLVKGYN------------------------------------ 225 (350)
Q Consensus 184 ~~~~~~v~~~~~~~~~~~l~~~--~~~~i~vwd~~~~~~~~~~~------------------------------------ 225 (350)
+..........|+|+++++.++ ....|-++|..+.+.+....
T Consensus 168 i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig 247 (369)
T PF02239_consen 168 IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIG 247 (369)
T ss_dssp EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE
T ss_pred ecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccccc
Confidence 5555667788999999876554 24567777776654432211
Q ss_pred -------------------cCCCCceeEecCCCCcEEEEe----cCCCeEEEEEcccCeeEEeecCC-CcCEEEEEEcCC
Q 018784 226 -------------------MPCNTESASLEPKLGNIFIAG----GEDMWVHVFDFHTGEQIGCNKGH-HGPVHCVRFSPG 281 (350)
Q Consensus 226 -------------------~~~~~~~~~~~~~~~~~l~sg----~~d~~i~v~d~~~~~~~~~~~~h-~~~v~~l~~sp~ 281 (350)
.......+..+| +++++.+. ...+.|.++|..+.+.+.++... ...+..+.|+++
T Consensus 248 ~~~v~v~d~~~wkvv~~I~~~G~glFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~d 326 (369)
T PF02239_consen 248 TDPVSVHDDYAWKVVKTIPTQGGGLFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPD 326 (369)
T ss_dssp --TTT-STTTBTSEEEEEE-SSSS--EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TT
T ss_pred CCccccchhhcCeEEEEEECCCCcceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCC
Confidence 000111112233 34455554 45678999999999877776532 235999999999
Q ss_pred CCEEEEecC--CCcEEEecCCCCCcc
Q 018784 282 GESYASGSE--DGTIRIWQTNPPNHE 305 (350)
Q Consensus 282 ~~~lasgs~--Dg~v~vw~~~~~~~~ 305 (350)
|+.+..+.. ++.|.++|..+.+..
T Consensus 327 G~~v~vS~~~~~~~i~v~D~~Tl~~~ 352 (369)
T PF02239_consen 327 GKEVWVSVWDGNGAIVVYDAKTLKEK 352 (369)
T ss_dssp SSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred CCEEEEEEecCCCEEEEEECCCcEEE
Confidence 997654333 337999998665543
No 195
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5.6e-15 Score=126.67 Aligned_cols=250 Identities=18% Similarity=0.235 Sum_probs=171.3
Q ss_pred eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC------CCeeeee--eccccEeEEEEcCCCCeEEEeeCCC
Q 018784 53 WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT------GDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEK 124 (350)
Q Consensus 53 ~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~------~~~~~~~--~h~~~V~~~~~~~~~~~l~sg~~d~ 124 (350)
+.+.+.+|.+.|.++.|+.++++||+||.|..+++|++.. .+++... .|...|.|++|.....++++|+.++
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~ 127 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG 127 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence 3456789999999999999999999999999999999742 2333333 3667899999999999999999999
Q ss_pred eEEEEECCCCCCCCee-ecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc----eeEeecCCCCeEEEEEecCC
Q 018784 125 ILRIFDLNRPDAPPRE-VGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK----IVQTLETKSPVTSAEVSRDG 199 (350)
Q Consensus 125 ~v~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~----~~~~~~~~~~v~~~~~~~~~ 199 (350)
+|..-|+++.+..-.. .....+.|+.+...|.+ .++++.++++.|.+||.+... ++..........++.|+|..
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~ 206 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET 206 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence 9999999865433211 12234578888877764 566677899999999998654 33333345567788899865
Q ss_pred -cEEEEE-cCCcEEEEECCCcce-eeeee----cCC--CC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCC
Q 018784 200 -RYITTA-DGSSVKFWDANHFGL-VKGYN----MPC--NT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGH 269 (350)
Q Consensus 200 -~~l~~~-~~~~i~vwd~~~~~~-~~~~~----~~~--~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h 269 (350)
.+|++. ..+.+.+||.+.... +..+. ++. .. ....+.+ .|..|++--...--.+||+-+.++......|
T Consensus 207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~-~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSP-SGNQFMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCC-CCCeehhhhccCCCEEeeeecccceeEeccC
Confidence 344443 456799999986532 11111 111 11 1223333 4666666555555567887765443222222
Q ss_pred -------CcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784 270 -------HGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305 (350)
Q Consensus 270 -------~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~ 305 (350)
...+.+++|..+.. +++||.+=-|++|.+......
T Consensus 286 N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds 327 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDS 327 (609)
T ss_pred CCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccc
Confidence 23577889976644 999999999999998654443
No 196
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=9.6e-14 Score=112.18 Aligned_cols=198 Identities=16% Similarity=0.169 Sum_probs=139.8
Q ss_pred ceeEe-eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeC----CCC--ceee--eccCcc-----CCeEEEEECCCC
Q 018784 8 VPLVC-HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG----ETG--DWIG--TFEGHK-----GAVWSCCLDANA 73 (350)
Q Consensus 8 ~~~~~-~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~----~~~--~~~~--~l~gH~-----~~V~~v~~~~~~ 73 (350)
++.|. ++|.+|++.+.|.. .+|++|+ ||.|+=|.- ++. +.+. ...-|. ..|+++.+.|..
T Consensus 53 ~~iv~eqahdgpiy~~~f~d-----~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e 126 (325)
T KOG0649|consen 53 LKIVPEQAHDGPIYYLAFHD-----DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE 126 (325)
T ss_pred cceeeccccCCCeeeeeeeh-----hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC
Confidence 34443 89999999999973 3666665 488886541 111 1111 112243 347888899887
Q ss_pred cEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee--------ecCC
Q 018784 74 LFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE--------VGNS 144 (350)
Q Consensus 74 ~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~--------~~~~ 144 (350)
.-++.++.|+.+.-||+++++....+ .|+..|.++........+++|+.||++|+||+.+++..... ..++
T Consensus 127 nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~ 206 (325)
T KOG0649|consen 127 NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPD 206 (325)
T ss_pred CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcc
Confidence 77777789999999999999988777 59999999998666667899999999999999865432211 1111
Q ss_pred -CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECC
Q 018784 145 -SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDAN 216 (350)
Q Consensus 145 -~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~ 216 (350)
...|-+++- +...++.|+. ..+.+|.+++.++...+..+.++..+.|..+ ..++++.++.|.-|.+.
T Consensus 207 ~g~wigala~---~edWlvCGgG-p~lslwhLrsse~t~vfpipa~v~~v~F~~d-~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 207 WGKWIGALAV---NEDWLVCGGG-PKLSLWHLRSSESTCVFPIPARVHLVDFVDD-CVLIGGEGNHVQSYTLN 274 (325)
T ss_pred cCceeEEEec---cCceEEecCC-CceeEEeccCCCceEEEecccceeEeeeecc-eEEEeccccceeeeeec
Confidence 223444442 3445554443 6899999999999999998888988888765 45556667788888764
No 197
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.6e-15 Score=135.45 Aligned_cols=205 Identities=21% Similarity=0.265 Sum_probs=141.2
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeC------CC----CceeeeccCccCCeEEEEECCCCcEEEEeeC
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG------ET----GDWIGTFEGHKGAVWSCCLDANALFSASGSA 81 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~------~~----~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~ 81 (350)
+++|.+||.|+++.+ .+..+.+|+-||+|+.|++ .+ ......|.||++.||.++++.....|+++|.
T Consensus 340 fraH~gPVl~v~v~~---n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~ 416 (577)
T KOG0642|consen 340 FRAHEGPVLCVVVPS---NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSS 416 (577)
T ss_pred EecccCceEEEEecC---CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecC
Confidence 699999999999876 8999999999999999943 22 1345678999999999999999999999999
Q ss_pred CCeEEEeeCCCCCeeeeee---ccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCeee------cCCCCcEEEE
Q 018784 82 DFTAKLWDALTGDEKHSFE---HKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREV------GNSSGSIRTV 151 (350)
Q Consensus 82 Dg~v~vWd~~~~~~~~~~~---h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~------~~~~~~v~~~ 151 (350)
||++|.|+...... .++. -.+...+++|.... .+.++...-+.--++++.......... ......+..+
T Consensus 417 DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~v 495 (577)
T KOG0642|consen 417 DGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKV 495 (577)
T ss_pred CceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceE
Confidence 99999999765544 3332 22345566665443 222222222222222222111110000 0011234444
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE-cCCcEEEEECCCccee
Q 018784 152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLV 221 (350)
Q Consensus 152 ~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~ 221 (350)
.+ ++...+.+++.+|++|+++|..+++.++.... ...++++++.|+|-+|.++ .++.+++|.+....++
T Consensus 496 Vs-~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 496 VS-HPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred Ee-cCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 44 45567888999999999999999998877764 4678999999999887665 5899999987554443
No 198
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=6.1e-14 Score=117.48 Aligned_cols=202 Identities=13% Similarity=0.160 Sum_probs=157.8
Q ss_pred eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC---CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~---~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd 89 (350)
+--.+||+|.+|++ |+..+|.+-+...+.||.... .+..++|..|...|++++|.|....++|++.|..-.||.
T Consensus 7 ~~~~~pitchAwn~---drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 7 HRLLEPITCHAWNS---DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred eeccCceeeeeecC---CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence 33467999999986 999999999999999988654 456789999999999999999999999999999999999
Q ss_pred CC-CCC---eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC---eeecCCCCcEEEEEEeCCCCcEEE
Q 018784 90 AL-TGD---EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWLHSDQTILS 162 (350)
Q Consensus 90 ~~-~~~---~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~ 162 (350)
.. .+. .+..+.++..++++.|+|..+.|++||..+.|.||=.+....-. .........|.++.|.+ .+-+++
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLla 162 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLA 162 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC-Ccceec
Confidence 83 333 23445799999999999999999999999999999876433211 12234566789999964 677888
Q ss_pred EEeCCCeEEEEECC-----C-------------CceeEee-cCCCCeEEEEEecCCcEEE-EEcCCcEEEEECCCc
Q 018784 163 SCTDSGGVRLWDAR-----S-------------GKIVQTL-ETKSPVTSAEVSRDGRYIT-TADGSSVKFWDANHF 218 (350)
Q Consensus 163 s~~~dg~i~iwd~~-----~-------------~~~~~~~-~~~~~v~~~~~~~~~~~l~-~~~~~~i~vwd~~~~ 218 (350)
.|+-|++++++..- . |+.+.++ ...+.+..+.|+|+|..|+ .+.|..+.+-|....
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 89999999998532 1 1122223 2345688999999997765 677888888887554
No 199
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.66 E-value=1.8e-15 Score=136.83 Aligned_cols=123 Identities=23% Similarity=0.206 Sum_probs=104.9
Q ss_pred CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-------ceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEE
Q 018784 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-------DWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKL 87 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~-------~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~v 87 (350)
...|+++.|+|+ |-..||.|+.|+.|+||.+..+ .+.+.|.+|...|+++.|+|- ...|++++.|-+|++
T Consensus 627 gt~vtDl~WdPF--D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~l 704 (1012)
T KOG1445|consen 627 GTLVTDLHWDPF--DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIEL 704 (1012)
T ss_pred CceeeecccCCC--ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeee
Confidence 346788888986 4458999999999999997653 345678899999999999984 568899999999999
Q ss_pred eeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee
Q 018784 88 WDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE 140 (350)
Q Consensus 88 Wd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~ 140 (350)
||+.+......+ .|++.|..++|+|+|+.+++.+.|++|++|+..+...+...
T Consensus 705 WDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~E 758 (1012)
T KOG1445|consen 705 WDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYE 758 (1012)
T ss_pred eehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcccc
Confidence 999988876665 79999999999999999999999999999998876655433
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2e-14 Score=133.52 Aligned_cols=210 Identities=18% Similarity=0.112 Sum_probs=137.8
Q ss_pred CCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCC---CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCC
Q 018784 82 DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158 (350)
Q Consensus 82 Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d---~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 158 (350)
+..|++||...........|...+.+..|+|+|+.|+..+.+ ..|.+||+.++... ......+....++|+|++.
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~--~l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK--VVASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE--EEecCCCccCceeECCCCC
Confidence 579999998655544444677789999999999999887654 46999999764321 1222233445688988766
Q ss_pred cEEEEEeCCCeEEE--EECCCCceeEeecCCCCeEEEEEecCCcEEEE-E-cCCcEEEEECCCcc-eeeeeecCCCCcee
Q 018784 159 TILSSCTDSGGVRL--WDARSGKIVQTLETKSPVTSAEVSRDGRYITT-A-DGSSVKFWDANHFG-LVKGYNMPCNTESA 233 (350)
Q Consensus 159 ~~~~s~~~dg~i~i--wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~~~~i~vwd~~~~~-~~~~~~~~~~~~~~ 233 (350)
.++++...+|.+.| ||+.+++..........+....|+|||+.++. + .++..++|++.... ......... ...
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~ 338 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSA 338 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCc
Confidence 67766667776555 46666654333333445678899999987654 3 35677888754321 112121111 233
Q ss_pred EecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784 234 SLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (350)
Q Consensus 234 ~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~ 299 (350)
.+.| +++.++..+.++ +.+||+.++........+ ...++.|+|+|++|+.++.++.+.+|.+
T Consensus 339 ~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 339 QISA-DGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred cCCC-CCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 4444 577777766655 556999888654322222 2356889999999999999998888875
No 201
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.6e-14 Score=137.47 Aligned_cols=236 Identities=20% Similarity=0.274 Sum_probs=161.1
Q ss_pred EEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeec----cccEeEEEEcC--CCCeEEEeeCCCeEEEEECCCCC-CC
Q 018784 65 WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH----KHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPD-AP 137 (350)
Q Consensus 65 ~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h----~~~V~~~~~~~--~~~~l~sg~~d~~v~vwd~~~~~-~~ 137 (350)
..+.|+|-...++++...-.|+|||-+.++....+.. ...|..+.+-. |..++++|+.||.||||+--... ..
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~ 1147 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKK 1147 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCC
Confidence 3556777777788887778999999998887766642 34688888744 56789999999999999742111 11
Q ss_pred Ceee----------cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC--CCeEEEEEe-cCCcEEEE
Q 018784 138 PREV----------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK--SPVTSAEVS-RDGRYITT 204 (350)
Q Consensus 138 ~~~~----------~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~~-~~~~~l~~ 204 (350)
.+.. ....+.-.-+.|....+.++++| +-+.|+|||......+..+... ..++++.-+ ..|.++++
T Consensus 1148 ~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~A 1226 (1387)
T KOG1517|consen 1148 PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAA 1226 (1387)
T ss_pred ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEE
Confidence 1111 11112223456766667666665 4689999999988888777653 456666544 34577665
Q ss_pred E-cCCcEEEEECCCcce---eeeeecCC---CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE--eecCCC--c-C
Q 018784 205 A-DGSSVKFWDANHFGL---VKGYNMPC---NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG--CNKGHH--G-P 272 (350)
Q Consensus 205 ~-~~~~i~vwd~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~--~~~~h~--~-~ 272 (350)
+ .||.||+||.|.... +..+.-+. ......+.+..-..+++|+.||.|++||++...... +...|. + .
T Consensus 1227 GfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~ 1306 (1387)
T KOG1517|consen 1227 GFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSA 1306 (1387)
T ss_pred eecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCcc
Confidence 5 689999999876432 22222221 233445555433479999999999999998743322 233443 3 5
Q ss_pred EEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784 273 VHCVRFSPGGESYASGSEDGTIRIWQTNPP 302 (350)
Q Consensus 273 v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~ 302 (350)
.++|..+++.+.+|||+. +.|+||++...
T Consensus 1307 lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1307 LTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred ceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence 899999999999999999 99999998643
No 202
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.65 E-value=5.4e-15 Score=131.37 Aligned_cols=167 Identities=14% Similarity=0.246 Sum_probs=125.9
Q ss_pred cEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEE
Q 018784 32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAF 110 (350)
Q Consensus 32 ~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~ 110 (350)
..++..|+||.+.|.+ ..++..+..++|.+.|.+-.|+++|.-|+|+|.||.|++|.- +|-.+.++ ....+|+|++|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEE
Confidence 4778889999999876 567888899999999999999999999999999999999984 33333333 35578999999
Q ss_pred cCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCe
Q 018784 111 SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPV 190 (350)
Q Consensus 111 ~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v 190 (350)
.|+.+.++-+.. +.+.|=.+.. ......-..|.+-|.++.|++ ...++++|++|-..++||-...-......+..+|
T Consensus 154 ~p~S~~vl~c~g-~h~~IKpL~~-n~k~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 154 APNSNSIVFCQG-GHISIKPLAA-NSKIIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAI 230 (737)
T ss_pred CCCCCceEEecC-CeEEEeeccc-ccceeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcccccCChhccce
Confidence 998765543332 3444444432 233344578999999999986 4568889999999999996533333334456799
Q ss_pred EEEEEecCCcEEE
Q 018784 191 TSAEVSRDGRYIT 203 (350)
Q Consensus 191 ~~~~~~~~~~~l~ 203 (350)
++++|+|+..+++
T Consensus 231 TSva~npd~~~~v 243 (737)
T KOG1524|consen 231 TSVAFNPEKDYLL 243 (737)
T ss_pred eeeeeccccceee
Confidence 9999999944443
No 203
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.1e-14 Score=122.94 Aligned_cols=188 Identities=17% Similarity=0.281 Sum_probs=142.8
Q ss_pred CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCC-CCcEEEEEeCCCeEEEEECCCCceeEeec--CC--CC
Q 018784 115 HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS-DQTILSSCTDSGGVRLWDARSGKIVQTLE--TK--SP 189 (350)
Q Consensus 115 ~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~s~~~dg~i~iwd~~~~~~~~~~~--~~--~~ 189 (350)
..+|++-..+.|++||..+++ ....++.+...+..+.|... ....+.+|+.||+|++||+|+......+. .+ .+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 458888999999999998744 34555667777888888865 56788999999999999999876555443 23 35
Q ss_pred eEEEEEecCCcEEEEEc-----CCcEEEEECCCcce-eeeeec--CCCCceeEecCCCCcEEEEecCCCeEEEEEcccCe
Q 018784 190 VTSAEVSRDGRYITTAD-----GSSVKFWDANHFGL-VKGYNM--PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE 261 (350)
Q Consensus 190 v~~~~~~~~~~~l~~~~-----~~~i~vwd~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~ 261 (350)
..+++..-++.+++++. +-.+.+||.|..+. +..+.- ......+.|.|.++++|++||.||.|.+||+....
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 56666665777887764 45799999998765 443322 23356778999999999999999999999987543
Q ss_pred ---eEEeecCCCcCEEEEEEcCCC-CEEEEecCCCcEEEecCCCCC
Q 018784 262 ---QIGCNKGHHGPVHCVRFSPGG-ESYASGSEDGTIRIWQTNPPN 303 (350)
Q Consensus 262 ---~~~~~~~h~~~v~~l~~sp~~-~~lasgs~Dg~v~vw~~~~~~ 303 (350)
.+.....|...|.++.|+.++ +.+.+-+...+..+|++....
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 233445688889999999876 458888999999999986544
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=4.1e-13 Score=114.59 Aligned_cols=238 Identities=15% Similarity=0.128 Sum_probs=155.0
Q ss_pred CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEE--EECCCCcEEEEeeCCCeEEEeeCCCCC
Q 018784 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSC--CLDANALFSASGSADFTAKLWDALTGD 94 (350)
Q Consensus 17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v--~~~~~~~~l~s~s~Dg~v~vWd~~~~~ 94 (350)
..+....|+. |+..|..|+.||. ++++.+........ -.+.+.-+ .|+.+=..+++...-..+++.+.....
T Consensus 6 ~ti~~~~~Nq---d~~~lsvGs~~Gy-k~~~~~~~~k~~~~--~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 6 PTINFIGFNQ---DSTLLSVGSKDGY-KIFSCSPFEKCFSK--DTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred cceeeeeecc---ceeEEEccCCCce-eEEecCchHHhhcc--cCCCeEEEEeecccceeEEEecCCCceEEEEEcccCc
Confidence 3455555665 8889999999997 78877665442222 22333333 344333334444333458888888777
Q ss_pred eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee--cCCCCcEEEEEEeCCCCcEEEEEe-CCCeEE
Q 018784 95 EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--GNSSGSIRTVAWLHSDQTILSSCT-DSGGVR 171 (350)
Q Consensus 95 ~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~s~~-~dg~i~ 171 (350)
.+..+.-+..|.++.++-+. |+++-.+. |.|||+.......... ..+...+.++..++.+..++.-++ ..|.|.
T Consensus 80 ~ICe~~fpt~IL~VrmNr~R--LvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNRKR--LVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV 156 (391)
T ss_pred eEEEEecCCceEEEEEccce--EEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence 77777777789999988554 66555544 9999998655433222 123333444444433334444333 338899
Q ss_pred EEECCCCceeEeecC-CCCeEEEEEecCCcEEEEEcC-C-cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC
Q 018784 172 LWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADG-S-SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE 248 (350)
Q Consensus 172 iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-~-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 248 (350)
+||+.+-+.+..+.. .+++.+++|+++|.+|+++++ | .|||+.+..+..+..
T Consensus 157 l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e------------------------- 211 (391)
T KOG2110|consen 157 LFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE------------------------- 211 (391)
T ss_pred EEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee-------------------------
Confidence 999999888888875 578899999999988887764 2 466666544332222
Q ss_pred CCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCC
Q 018784 249 DMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN 303 (350)
Q Consensus 249 d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~ 303 (350)
++.|. -...|++++|+|++++|++.|.-++|.++.+....
T Consensus 212 --------FRRG~-------~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 212 --------FRRGT-------YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred --------eeCCc-------eeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 11111 12358999999999999999999999999987554
No 205
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.3e-15 Score=131.29 Aligned_cols=254 Identities=20% Similarity=0.280 Sum_probs=187.2
Q ss_pred eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee--eccccEeEEEEcCC--CCeEEEeeCCCeEEEE
Q 018784 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF--EHKHIVRACAFSED--THLLLTGGFEKILRIF 129 (350)
Q Consensus 54 ~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~--~h~~~V~~~~~~~~--~~~l~sg~~d~~v~vw 129 (350)
...|.+|.+.|..|.|...|..++|||.|..|.+||-..+..+..+ .|...|....|-|+ ...+++.+.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 3567899999999999999999999999999999999888877766 48888888888773 4678999999999988
Q ss_pred ECCCC-CC-CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec---CC-C---CeEEEEEecCCc
Q 018784 130 DLNRP-DA-PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE---TK-S---PVTSAEVSRDGR 200 (350)
Q Consensus 130 d~~~~-~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~---~~-~---~v~~~~~~~~~~ 200 (350)
.+... .. ..+....|.+.+..++..|....-+.+|+.|+.++-.|++.+.+...+. .+ . ....++..|...
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 76432 22 2456678999999999888888889999999999999999875433332 22 2 456777887654
Q ss_pred --EEEEEcCCcEEEEECCCccee------eee-------ecCCCCceeEecCCCCcEEEEecCCCeEEEEEcc--cC---
Q 018784 201 --YITTADGSSVKFWDANHFGLV------KGY-------NMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFH--TG--- 260 (350)
Q Consensus 201 --~l~~~~~~~i~vwd~~~~~~~------~~~-------~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~--~~--- 260 (350)
+.+.+.+..+++||.+..... +.+ ..+.+...+.+.. .+.-+++...|-.|+++.-. .|
T Consensus 295 ~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh-~~sElLaSYnDe~IYLF~~~~~~G~~p 373 (559)
T KOG1334|consen 295 NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSH-DGSELLASYNDEDIYLFNKSMGDGSEP 373 (559)
T ss_pred cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecC-CccceeeeecccceEEeccccccCCCC
Confidence 344567889999998764322 211 1122333344443 35566677788889999533 33
Q ss_pred -------eeEEe-ecCCCc--CEEEEEEc-CCCCEEEEecCCCcEEEecCCCCCcccCC
Q 018784 261 -------EQIGC-NKGHHG--PVHCVRFS-PGGESYASGSEDGTIRIWQTNPPNHEENH 308 (350)
Q Consensus 261 -------~~~~~-~~~h~~--~v~~l~~s-p~~~~lasgs~Dg~v~vw~~~~~~~~~~~ 308 (350)
..+.. ++||.. .|..+-|- |...|++|||..|.|.||+-...+.+...
T Consensus 374 ~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M 432 (559)
T KOG1334|consen 374 DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM 432 (559)
T ss_pred CCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh
Confidence 22333 678864 47777764 88899999999999999998766665443
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=8.3e-15 Score=126.76 Aligned_cols=190 Identities=23% Similarity=0.218 Sum_probs=141.0
Q ss_pred eEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee
Q 018784 20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF 99 (350)
Q Consensus 20 ~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~ 99 (350)
..++|++ +|..|++|+.||++|||+..+-..+.....|.+.|..+.|+||++++++-+.| ..+||+..++..+...
T Consensus 148 k~vaf~~---~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNG---DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcC---CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 4677775 99999999999999999966666666778899999999999999999999999 9999999998554443
Q ss_pred e---ccccEeEEEEcCCC---CeEE--EeeCCCeEEEEECCCCCC----CCeeecCCCCcEEEEEEeCCCCcEEEEEeCC
Q 018784 100 E---HKHIVRACAFSEDT---HLLL--TGGFEKILRIFDLNRPDA----PPREVGNSSGSIRTVAWLHSDQTILSSCTDS 167 (350)
Q Consensus 100 ~---h~~~V~~~~~~~~~---~~l~--sg~~d~~v~vwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d 167 (350)
. -+.....|.|+.++ .+.+ .-..-+.|+.|++..... +..........+.+++.+ .++++++-|+.|
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS-~dGkf~AlGT~d 302 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS-DDGKFLALGTMD 302 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc-CCCcEEEEeccC
Confidence 2 33456788888776 3333 334456677777643222 222223334578888876 577888899999
Q ss_pred CeEEEEECCCCceeEeec--CCCCeEEEEEecCCcEEEE-EcCCcEEEEE
Q 018784 168 GGVRLWDARSGKIVQTLE--TKSPVTSAEVSRDGRYITT-ADGSSVKFWD 214 (350)
Q Consensus 168 g~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~-~~~~~i~vwd 214 (350)
|.|.|++..+-+.+.-.+ |..-|+.+.|+|+.++++. +.+....+.-
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 999999998887766665 3457999999999888764 3455555543
No 207
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.62 E-value=6.7e-14 Score=127.47 Aligned_cols=228 Identities=17% Similarity=0.265 Sum_probs=164.2
Q ss_pred CeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee
Q 018784 63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV 141 (350)
Q Consensus 63 ~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~ 141 (350)
.|+.++|.|||..|+-+ .+..+-++|...|....++ .|+..|++++|+.+|+.+++|+.|..|.+|...- .....
T Consensus 14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILK 89 (1081)
T ss_pred chheeEECCCCceEEEe-cCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceee
Confidence 78899999999876654 4667899999999877776 6999999999999999999999999999997532 22233
Q ss_pred cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcce
Q 018784 142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGL 220 (350)
Q Consensus 142 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~ 220 (350)
-.|...|.++.|.|- ...+++|+- ...-+|...... +........+.+++|..||++++.+ .+|+|.+-+......
T Consensus 90 YSH~D~IQCMsFNP~-~h~LasCsL-sdFglWS~~qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek 166 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPI-THQLASCSL-SDFGLWSPEQKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK 166 (1081)
T ss_pred eccCCeeeEeecCch-HHHhhhcch-hhccccChhhhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc
Confidence 457889999998764 445667765 357788765432 2233334578889999999999877 478888775433222
Q ss_pred eeeeecC----CCCceeEecCCC----CcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCC
Q 018784 221 VKGYNMP----CNTESASLEPKL----GNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292 (350)
Q Consensus 221 ~~~~~~~----~~~~~~~~~~~~----~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg 292 (350)
++ +.-| .+..++.++|.. ..++++.....++-+|.+. |+.+..-..-.-...|+.+.|+|.++..|+.|+
T Consensus 167 ~~-I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk 244 (1081)
T KOG1538|consen 167 VK-IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDK 244 (1081)
T ss_pred eE-EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCC
Confidence 11 2211 233455566543 2567777777777777764 555543334444568899999999999999999
Q ss_pred cEEEecC
Q 018784 293 TIRIWQT 299 (350)
Q Consensus 293 ~v~vw~~ 299 (350)
.+.++..
T Consensus 245 ~L~~fTR 251 (1081)
T KOG1538|consen 245 QLSLFTR 251 (1081)
T ss_pred ceEEEee
Confidence 9999964
No 208
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=5.7e-13 Score=123.74 Aligned_cols=236 Identities=17% Similarity=0.111 Sum_probs=147.1
Q ss_pred CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC---CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE
Q 018784 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL 118 (350)
Q Consensus 42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D---g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~ 118 (350)
.+.++|. ++.....+..+...+.+.+|+|+++.++..+.+ ..|.+||+.+++........+.+.+.+|+|+|+.|+
T Consensus 177 ~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 255 (427)
T PRK02889 177 QLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLA 255 (427)
T ss_pred EEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 4666665 455555666778889999999999988766543 459999998887554433445567889999998876
Q ss_pred -EeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC--CCCceeEeecCCCCeEEEEE
Q 018784 119 -TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA--RSGKIVQTLETKSPVTSAEV 195 (350)
Q Consensus 119 -sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~--~~~~~~~~~~~~~~v~~~~~ 195 (350)
+.+.++...+|.++........+..+.+......|++++..++.+...++...+|.+ .+++...............|
T Consensus 256 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~ 335 (427)
T PRK02889 256 VALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRI 335 (427)
T ss_pred EEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEE
Confidence 567788877776532222233333344455677898877767666555566666654 44443222112223345789
Q ss_pred ecCCcEEEEEc-C-C--cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCC---eEEEEEcccCeeEEeecC
Q 018784 196 SRDGRYITTAD-G-S--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM---WVHVFDFHTGEQIGCNKG 268 (350)
Q Consensus 196 ~~~~~~l~~~~-~-~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~---~i~v~d~~~~~~~~~~~~ 268 (350)
+|+|++++... . + .|.+||+.+..... +..........+.+ ++++++..+.++ .+++.++ +|+....+..
T Consensus 336 SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~~~~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~ 412 (427)
T PRK02889 336 SPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDTTRDESPSFAP-NGRYILYATQQGGRSVLAAVSS-DGRIKQRLSV 412 (427)
T ss_pred CCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCCCCccCceECC-CCCEEEEEEecCCCEEEEEEEC-CCCceEEeec
Confidence 99999876432 2 2 69999987765432 22222234456666 466665555433 3555566 4555555555
Q ss_pred CCcCEEEEEEcCC
Q 018784 269 HHGPVHCVRFSPG 281 (350)
Q Consensus 269 h~~~v~~l~~sp~ 281 (350)
+.+.+...+|+|-
T Consensus 413 ~~g~~~~p~wsp~ 425 (427)
T PRK02889 413 QGGDVREPSWGPF 425 (427)
T ss_pred CCCCCCCCccCCC
Confidence 6666777778763
No 209
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.5e-12 Score=120.87 Aligned_cols=233 Identities=16% Similarity=0.146 Sum_probs=151.8
Q ss_pred CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee---CCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE
Q 018784 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS---ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL 118 (350)
Q Consensus 42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s---~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~ 118 (350)
.+.++|...... ..+..+...+...+|+|||+.++-.+ .+..|.+|++.+++........+.+....|+|||+.|+
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La 258 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 258 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEE
Confidence 577787654443 34555667889999999999877543 34679999998876554444445566789999999887
Q ss_pred Ee-eCCC--eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe--EEEEECCCCceeEeecCCCCeEEE
Q 018784 119 TG-GFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQTLETKSPVTSA 193 (350)
Q Consensus 119 sg-~~d~--~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~--i~iwd~~~~~~~~~~~~~~~v~~~ 193 (350)
.. +.++ .|.+||+.++.. .....+...+....|+|++..++.+...++. |.++|+.+++..............
T Consensus 259 ~~~~~~g~~~I~~~d~~tg~~--~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~ 336 (429)
T PRK03629 259 FALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDA 336 (429)
T ss_pred EEEcCCCCcEEEEEECCCCCE--EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence 54 4344 588889875432 2233334456788898877666666554454 444577666543222223344568
Q ss_pred EEecCCcEEEEE-c-C--CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCe---EEEEEcccCeeEEee
Q 018784 194 EVSRDGRYITTA-D-G--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMW---VHVFDFHTGEQIGCN 266 (350)
Q Consensus 194 ~~~~~~~~l~~~-~-~--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~---i~v~d~~~~~~~~~~ 266 (350)
.|+|+|++++.. . + ..|.+||+.+.... .+..........+.| ++++++..+.++. ++++++ +|+....+
T Consensus 337 ~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l 413 (429)
T PRK03629 337 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAP-NGTMVIYSSSQGMGSVLNLVST-DGRFKARL 413 (429)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECC-CCCEEEEEEcCCCceEEEEEEC-CCCCeEEC
Confidence 899999887653 2 2 35888998776533 222222223445555 6788888777664 666676 46666677
Q ss_pred cCCCcCEEEEEEcC
Q 018784 267 KGHHGPVHCVRFSP 280 (350)
Q Consensus 267 ~~h~~~v~~l~~sp 280 (350)
.+|.+.+...+|+|
T Consensus 414 ~~~~~~~~~p~Wsp 427 (429)
T PRK03629 414 PATDGQVKFPAWSP 427 (429)
T ss_pred ccCCCCcCCcccCC
Confidence 78888899999987
No 210
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=3.3e-13 Score=115.93 Aligned_cols=242 Identities=16% Similarity=0.186 Sum_probs=170.7
Q ss_pred cCCeEEEEECCCC--cEEEEeeCCCeEEEeeCCCCCeeeeee-------ccccEeEEEEcCCCCeEEEeeCCCeEEEEEC
Q 018784 61 KGAVWSCCLDANA--LFSASGSADFTAKLWDALTGDEKHSFE-------HKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131 (350)
Q Consensus 61 ~~~V~~v~~~~~~--~~l~s~s~Dg~v~vWd~~~~~~~~~~~-------h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~ 131 (350)
...|..++|..++ ..+...+.|..+.............+. ....|..++.. ...|++|-.+|.+.+|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEec
Confidence 3456667775444 456666678788877776655443321 23345544433 346778888999999998
Q ss_pred CCCCC---CCeeecCCCCcEEEEEEeCCCCcEEEEEeCC--CeEEEEECCCCceeEeecC----------CCCeEEEEEe
Q 018784 132 NRPDA---PPREVGNSSGSIRTVAWLHSDQTILSSCTDS--GGVRLWDARSGKIVQTLET----------KSPVTSAEVS 196 (350)
Q Consensus 132 ~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d--g~i~iwd~~~~~~~~~~~~----------~~~v~~~~~~ 196 (350)
..+.. +..... ....+..+.-.+....++++|+.. ..+++||+.+.+.+.+.+. +--++++.|.
T Consensus 133 k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence 74431 122222 223455565556677889989988 7899999998866655432 1235666776
Q ss_pred cC--CcEEE-EEcCCcEEEEECCCc-ceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEe-ecCCCc
Q 018784 197 RD--GRYIT-TADGSSVKFWDANHF-GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGC-NKGHHG 271 (350)
Q Consensus 197 ~~--~~~l~-~~~~~~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~-~~~h~~ 271 (350)
+. ...++ +..-+.+|+||.+.+ +++..+.+..+..+..-..+.++.+++|..-+.+..||++.+..+.. +.+-.+
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG 291 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG 291 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence 65 44444 445689999999876 46667766655554443334688999999999999999999998876 889999
Q ss_pred CEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784 272 PVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305 (350)
Q Consensus 272 ~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~ 305 (350)
.|.++..+|..+++|++|.|..|||+|+.+...+
T Consensus 292 sirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 292 SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred CcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 9999999999999999999999999999875544
No 211
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.57 E-value=7.4e-15 Score=128.43 Aligned_cols=199 Identities=19% Similarity=0.221 Sum_probs=162.3
Q ss_pred ccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeE
Q 018784 103 HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ 182 (350)
Q Consensus 103 ~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~ 182 (350)
-..+.+.|+.+|.+|+.|+.-|.+..+|..+..+... ......|.++.|.+..+.+++ + ..+.+.||| +.|..++
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E--i~v~Etv~Dv~~LHneq~~AV-A-QK~y~yvYD-~~GtElH 204 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE--INVMETVRDVTFLHNEQFFAV-A-QKKYVYVYD-NNGTELH 204 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeee--eehhhhhhhhhhhcchHHHHh-h-hhceEEEec-CCCcEEe
Confidence 3467899999999999999999999999876554333 234557889999987765444 3 456899999 5688899
Q ss_pred eecCCCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCe
Q 018784 183 TLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE 261 (350)
Q Consensus 183 ~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~ 261 (350)
++....++..+.|.|..-+|++++ .|.++.-|+.+++.+..+.............+.+.++-.|...|+|-+|.-...+
T Consensus 205 Clk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 205 CLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred ehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 999999999999999988887765 5789999999988876665444433333333456788899999999999999888
Q ss_pred eEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCccc
Q 018784 262 QIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEE 306 (350)
Q Consensus 262 ~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~ 306 (350)
++..+..|.++|.++++.++|+|+||.+.|..++|||++...++.
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~ 329 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLH 329 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccc
Confidence 888888999999999999999999999999999999998766543
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.56 E-value=3.1e-14 Score=124.57 Aligned_cols=264 Identities=21% Similarity=0.266 Sum_probs=192.5
Q ss_pred eeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee
Q 018784 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS 98 (350)
Q Consensus 19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~ 98 (350)
-+.+.|.. +|+.|+-|+.-|.+-..|-.++.+...+.- ...|+.+.|-.+.+++|.+ ....+.|+|- .|.+++.
T Consensus 132 PY~~~ytr---nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElHC 205 (545)
T KOG1272|consen 132 PYHLDYTR---NGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELHC 205 (545)
T ss_pred CeeeeecC---CccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEee
Confidence 34566654 899999999999999988888887766643 2567778887777777754 7788899994 5677887
Q ss_pred eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC
Q 018784 99 FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG 178 (350)
Q Consensus 99 ~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~ 178 (350)
+.....|..+.|-|..-+|++++..|.++.-|+..++..... -...+.+..+.-. +-+.++-.|...|+|.+|...+.
T Consensus 206 lk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~-~t~~G~~~vm~qN-P~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 206 LKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI-RTGAGRTDVMKQN-PYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred hhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHH-HccCCccchhhcC-CccceEEEcCCCceEEecCCCCc
Confidence 777778999999999999999999999999999877654322 2234455555543 44556777888899999999988
Q ss_pred ceeEeec-CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEE
Q 018784 179 KIVQTLE-TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFD 256 (350)
Q Consensus 179 ~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d 256 (350)
+++..+. +.++|.++++.++|+|++++ -|..++|||+|.+..+.++..+......+++ .+-+++.+....+.+|.
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~S---qkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLS---QKGLLALSYGDHVQIWK 360 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCccccccc---cccceeeecCCeeeeeh
Confidence 8766655 56899999999999998765 5899999999998877777664444444444 23455556677799995
Q ss_pred -ccc--CeeEEeecCC--CcCEEEEEEcCCCCEEEEecCCCc
Q 018784 257 -FHT--GEQIGCNKGH--HGPVHCVRFSPGGESYASGSEDGT 293 (350)
Q Consensus 257 -~~~--~~~~~~~~~h--~~~v~~l~~sp~~~~lasgs~Dg~ 293 (350)
... +.....+..| .++|..+.|.|-...|-.|-.-|.
T Consensus 361 d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 361 DALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred hhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCc
Confidence 322 1222223334 358999999997766655555443
No 213
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.56 E-value=5e-12 Score=106.58 Aligned_cols=252 Identities=13% Similarity=0.115 Sum_probs=163.6
Q ss_pred eCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCC-cEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCe
Q 018784 38 SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA-LFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHL 116 (350)
Q Consensus 38 s~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~-~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~ 116 (350)
..|+.|.+|++.-.++-..+..-++.+.+++|+||| ..|.+...|-.|-||.+.+.+....--.+..+..++|+|+|++
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f 147 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQF 147 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCce
Confidence 456777788877777777777778888999999999 5677888999999999988776554434556789999999988
Q ss_pred EEEeeCC------------------------------------CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcE
Q 018784 117 LLTGGFE------------------------------------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160 (350)
Q Consensus 117 l~sg~~d------------------------------------~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 160 (350)
.+-.+.- ..+.+||-.-.... ..=+..-.+..++|+| .+.+
T Consensus 148 ~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv--~aYe~~lG~k~v~wsP-~~qf 224 (447)
T KOG4497|consen 148 CAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV--YAYERGLGLKFVEWSP-CNQF 224 (447)
T ss_pred eeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee--eeeeeccceeEEEecc-ccce
Confidence 7765532 11223321100000 0001123466778875 4567
Q ss_pred EEEEeCCCeEEEEECCCCceeEe-----------------------------e---------------------------
Q 018784 161 LSSCTDSGGVRLWDARSGKIVQT-----------------------------L--------------------------- 184 (350)
Q Consensus 161 ~~s~~~dg~i~iwd~~~~~~~~~-----------------------------~--------------------------- 184 (350)
++.|+.|+.+|+-+--+-+.... +
T Consensus 225 lavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~ 304 (447)
T KOG4497|consen 225 LAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVK 304 (447)
T ss_pred EEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhccee
Confidence 88899999988854222111000 0
Q ss_pred ----cC-------CCCeEEEEEecCCcEEEEEcCC---cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCC
Q 018784 185 ----ET-------KSPVTSAEVSRDGRYITTADGS---SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM 250 (350)
Q Consensus 185 ----~~-------~~~v~~~~~~~~~~~l~~~~~~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~ 250 (350)
+. ...+-.++|++|..++++.+|. .+-+||++..+....+..........+.|...+ |+.+....
T Consensus 305 ~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~pr-L~vctg~s 383 (447)
T KOG4497|consen 305 VHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPR-LVVCTGKS 383 (447)
T ss_pred eecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCce-EEEEcCCc
Confidence 00 0124567899999999998874 699999987665433333334455566665444 44444455
Q ss_pred eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcE
Q 018784 251 WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTI 294 (350)
Q Consensus 251 ~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v 294 (350)
.+++|.......+... +..-.|..+.|.-.|.+++-.+.|.--
T Consensus 384 rLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 384 RLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred eEEEEcCCCceEEecC-CCCceeeeEEecCCCcEEEEEcCCceE
Confidence 6889987654444332 233679999999999999999998643
No 214
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.7e-12 Score=120.98 Aligned_cols=233 Identities=18% Similarity=0.130 Sum_probs=149.0
Q ss_pred CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeC---CCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE
Q 018784 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL 118 (350)
Q Consensus 42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~---Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~ 118 (350)
.+.+||... ...+.+..|...+...+|+|+++.++..+. +..|.+||+.+++........+...+.+|+|+|+.|+
T Consensus 185 ~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~ 263 (433)
T PRK04922 185 ALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLA 263 (433)
T ss_pred EEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEE
Confidence 588898754 444556667788999999999998887663 3469999998877654444455556789999998775
Q ss_pred -EeeCCC--eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe--EEEEECCCCceeEeecCCCCeEEE
Q 018784 119 -TGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQTLETKSPVTSA 193 (350)
Q Consensus 119 -sg~~d~--~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~--i~iwd~~~~~~~~~~~~~~~v~~~ 193 (350)
+.+.++ .|.+||+.++.. .....+.......+|++++..++++...++. |.++|+.+++..............
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g~~--~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~ 341 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSRQL--TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARA 341 (433)
T ss_pred EEEeCCCCceEEEEECCCCCe--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCE
Confidence 445554 588999876542 2233344445678898776666666545554 667777776543222222334468
Q ss_pred EEecCCcEEEEEc--CC--cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCC---CeEEEEEcccCeeEEee
Q 018784 194 EVSRDGRYITTAD--GS--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED---MWVHVFDFHTGEQIGCN 266 (350)
Q Consensus 194 ~~~~~~~~l~~~~--~~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d---~~i~v~d~~~~~~~~~~ 266 (350)
.|+|+|++++... ++ .|.+||+.+.... .+..........+.+ ++++++..+.+ ..|+++++. +.....+
T Consensus 342 ~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l 418 (433)
T PRK04922 342 SVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAP-NGSMVLYATREGGRGVLAAVSTD-GRVRQRL 418 (433)
T ss_pred EECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECC-CCCEEEEEEecCCceEEEEEECC-CCceEEc
Confidence 8999999876532 22 5999998776543 222211223345555 46665555542 357777774 4445555
Q ss_pred cCCCcCEEEEEEcC
Q 018784 267 KGHHGPVHCVRFSP 280 (350)
Q Consensus 267 ~~h~~~v~~l~~sp 280 (350)
..+.+.+...+|+|
T Consensus 419 ~~~~g~~~~p~wsp 432 (433)
T PRK04922 419 VSADGEVREPAWSP 432 (433)
T ss_pred ccCCCCCCCCccCC
Confidence 55566677777876
No 215
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=6.3e-12 Score=117.22 Aligned_cols=232 Identities=14% Similarity=0.078 Sum_probs=147.6
Q ss_pred CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee---CCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE
Q 018784 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS---ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL 118 (350)
Q Consensus 42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s---~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~ 118 (350)
.|.++|.. +...+.+..|...+...+|+|||+.++..+ .+..|.+||+.++.......+.+.+...+|+|+|+.|+
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la 261 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVV 261 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEE
Confidence 57778764 445556778888999999999999877655 35789999998887655445666778899999998775
Q ss_pred -EeeCCCe--EEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC--eEEEEECCCCceeEeecCCCCeEEE
Q 018784 119 -TGGFEKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSA 193 (350)
Q Consensus 119 -sg~~d~~--v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~ 193 (350)
+.+.++. |.+||+.++.. ..+..+.+......|++++..++.+...++ .|.+||+..++..............
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~~~--~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~ 339 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSGTT--TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTP 339 (435)
T ss_pred EEEecCCCceEEEEECCCCce--EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCe
Confidence 5555555 66668765432 333344455667888887766666554443 6888898766543333334445667
Q ss_pred EEecCCcEEEEEc--C--CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC-C-----CeEEEEEcccCeeE
Q 018784 194 EVSRDGRYITTAD--G--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE-D-----MWVHVFDFHTGEQI 263 (350)
Q Consensus 194 ~~~~~~~~l~~~~--~--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-d-----~~i~v~d~~~~~~~ 263 (350)
.|+|+|+.++... . ..|.+||+..... +.+..........+.| +++.++..+. . ..++++|+..+..
T Consensus 340 ~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~sp-DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~- 416 (435)
T PRK05137 340 VWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAP-NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE- 416 (435)
T ss_pred EECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECC-CCCEEEEEEccCCCCCcceEEEEECCCCce-
Confidence 8999999876542 2 3588888754432 2222222334455666 4665554333 2 3577788765544
Q ss_pred EeecCCCcCEEEEEEcC
Q 018784 264 GCNKGHHGPVHCVRFSP 280 (350)
Q Consensus 264 ~~~~~h~~~v~~l~~sp 280 (350)
..+. ..+.+...+|+|
T Consensus 417 ~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 417 REVP-TPGDASDPAWSP 432 (435)
T ss_pred EEcc-CCCCccCcccCC
Confidence 2333 233355566665
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=7.2e-12 Score=105.12 Aligned_cols=234 Identities=15% Similarity=0.219 Sum_probs=140.5
Q ss_pred eeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEE-EeeCC------CeEEEeeCC
Q 018784 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSA-SGSAD------FTAKLWDAL 91 (350)
Q Consensus 19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~-s~s~D------g~v~vWd~~ 91 (350)
...++|+. |..-++.|..+| .|||+.+..+......-+.+.+.-+.+-....++| .||.. ..|.|||-.
T Consensus 8 ~lsvs~NQ---D~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 8 TLSVSFNQ---DHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred eeEEEEcc---CCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc
Confidence 34477875 766777776655 59999876444333333333322222222233332 33333 579999977
Q ss_pred CCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC-CCCCCee--ecCCCCcEEEEEEeCCCCcE--EEEEeC
Q 018784 92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR-PDAPPRE--VGNSSGSIRTVAWLHSDQTI--LSSCTD 166 (350)
Q Consensus 92 ~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~-~~~~~~~--~~~~~~~v~~~~~~~~~~~~--~~s~~~ 166 (350)
..+++..+.-...|.++.+.++. |++. -.+.|.||...+ +...... ....++ ..++ .|..... +.-|-.
T Consensus 84 k~~~i~el~f~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~l~~~et~~NPkG-lC~~--~~~~~k~~LafPg~k 157 (346)
T KOG2111|consen 84 KERCIIELSFNSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKLLHVIETRSNPKG-LCSL--CPTSNKSLLAFPGFK 157 (346)
T ss_pred cCcEEEEEEeccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhheeeeecccCCCc-eEee--cCCCCceEEEcCCCc
Confidence 77888888899999999999875 3333 366899998752 2222111 111222 2222 2332222 223344
Q ss_pred CCeEEEEECCCCce---eEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEE
Q 018784 167 SGGVRLWDARSGKI---VQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF 243 (350)
Q Consensus 167 dg~i~iwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (350)
-|.|+|-|+...+. .....+.+.|.+++.+-+| .++
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-----------------------------------------t~v 196 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-----------------------------------------TLV 196 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-----------------------------------------cEE
Confidence 47788777765433 2222234555555555544 455
Q ss_pred EEecCCCe-EEEEEcccCeeEEeec-C-CCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCC
Q 018784 244 IAGGEDMW-VHVFDFHTGEQIGCNK-G-HHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPN 303 (350)
Q Consensus 244 ~sg~~d~~-i~v~d~~~~~~~~~~~-~-h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~ 303 (350)
|++|..|+ |||||..+|+++..+. | ....|++|+|||+..+||.+|..|+|.|+.+....
T Consensus 197 ATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 197 ATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 55555554 6666666666665553 2 34569999999999999999999999999987644
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.4e-11 Score=114.41 Aligned_cols=211 Identities=16% Similarity=0.097 Sum_probs=136.4
Q ss_pred eEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEee---CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcE
Q 018784 84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGG---FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160 (350)
Q Consensus 84 ~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~---~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 160 (350)
.|.+||...........+...+.+.+|+|||+.|+..+ .+..+.+|++.+++. ..+....+....+.|+|++..+
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~~L 257 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKL 257 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCCEE
Confidence 68889987655555556677899999999999887654 345799999876532 2222233445568899877777
Q ss_pred EEEEeCCC--eEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE-Ec-CC--cEEEEECCCcceeeeeecCC-CCcee
Q 018784 161 LSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD-GS--SVKFWDANHFGLVKGYNMPC-NTESA 233 (350)
Q Consensus 161 ~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-~~--~i~vwd~~~~~~~~~~~~~~-~~~~~ 233 (350)
+++...++ .|.+||+.+++..........+....|+|||+.|+. ++ ++ .|.++|+.+.... .+.... .....
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~ 336 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDA 336 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCE
Confidence 76655555 589999998876554444556778899999987754 33 23 3555566654332 222222 22334
Q ss_pred EecCCCCcEEEEecC-C--CeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCc---EEEecCC
Q 018784 234 SLEPKLGNIFIAGGE-D--MWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGT---IRIWQTN 300 (350)
Q Consensus 234 ~~~~~~~~~l~sg~~-d--~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~---v~vw~~~ 300 (350)
.+.| +++.++..+. + ..|++||+.++... .+... .......|+|||++|+..+.++. +++++++
T Consensus 337 ~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 337 DVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EECC-CCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 5555 4666655443 3 35888999877643 23221 12356789999999998887764 6677664
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.53 E-value=2.3e-11 Score=102.17 Aligned_cols=173 Identities=12% Similarity=0.197 Sum_probs=133.0
Q ss_pred CCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC-Ceeeee---eccccEeEEEEcCCCCe
Q 018784 41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-DEKHSF---EHKHIVRACAFSEDTHL 116 (350)
Q Consensus 41 ~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~-~~~~~~---~h~~~V~~~~~~~~~~~ 116 (350)
.++.|||-...+++.+++ ...+|.+|.+..+-..++. ...|.||..... +.++.+ ..++...++.-+.+..+
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~I~~V~l~r~riVvvl---~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~ 150 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSEIKAVKLRRDRIVVVL---ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSL 150 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccceeeEEEcCCeEEEEe---cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceE
Confidence 468999988888888876 5688999999877665554 889999987633 344433 33445555544445555
Q ss_pred EEEe-eCCCeEEEEECCCCCC-CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe-EEEEECCCCceeEeecC---CCCe
Q 018784 117 LLTG-GFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG-VRLWDARSGKIVQTLET---KSPV 190 (350)
Q Consensus 117 l~sg-~~d~~v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~-i~iwd~~~~~~~~~~~~---~~~v 190 (350)
||-- -.-|.|.|-|+..... ++..+..|...|.+++.. .++.++++++..|| |||||.++|..+.++.. +..+
T Consensus 151 LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 151 LAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALN-LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred EEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEc-CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 5553 4469999999976544 457778899999999865 67889999999998 89999999998888864 5679
Q ss_pred EEEEEecCCcEEEEEcC-CcEEEEECCCc
Q 018784 191 TSAEVSRDGRYITTADG-SSVKFWDANHF 218 (350)
Q Consensus 191 ~~~~~~~~~~~l~~~~~-~~i~vwd~~~~ 218 (350)
.+++|+|+..+|++++| |++.++.++..
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999988765 79999988653
No 219
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2e-11 Score=113.92 Aligned_cols=214 Identities=14% Similarity=0.101 Sum_probs=137.8
Q ss_pred CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeC---CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCc
Q 018784 83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF---EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT 159 (350)
Q Consensus 83 g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~---d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (350)
..|.+||...........+...+.+.+|+|+|+.|+..+. +..|.+||+.++.. .......+.+....|+|++..
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCCE
Confidence 4788889865555555567788999999999998887653 46899999976543 233445566778889987777
Q ss_pred EEEEEeCCCe--EEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc--C--CcEEEEECCCcceeeeeecCCCCcee
Q 018784 160 ILSSCTDSGG--VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD--G--SSVKFWDANHFGLVKGYNMPCNTESA 233 (350)
Q Consensus 160 ~~~s~~~dg~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--~~i~vwd~~~~~~~~~~~~~~~~~~~ 233 (350)
++++.+.++. |.+||+.+++...............|+|||+.++... + ..|.++|+......+-..........
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~ 339 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTP 339 (435)
T ss_pred EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCe
Confidence 7777766655 7778998876544333334456689999998776443 2 25888887665433222112222334
Q ss_pred EecCCCCcEEEEecCC---CeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCC------CcEEEecCCC
Q 018784 234 SLEPKLGNIFIAGGED---MWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSED------GTIRIWQTNP 301 (350)
Q Consensus 234 ~~~~~~~~~l~sg~~d---~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~D------g~v~vw~~~~ 301 (350)
.+.| +++.++..+.+ ..|.+||+..+.. ..+. ....+....|+|||++|+..+.+ ..+++.++..
T Consensus 340 ~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 340 VWSP-RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred EECC-CCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 5655 46666554432 3688888765543 2232 22246788999999987654432 2466666643
No 220
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=8.8e-12 Score=112.10 Aligned_cols=275 Identities=17% Similarity=0.186 Sum_probs=179.0
Q ss_pred ccCCceeEEEecccCCCccEE-EEEeCCCCeeEeeCCCCceeeeccCccC--CeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784 14 GHSRPVVDLFYSPITPDGFFL-VSASKDSSPMLRNGETGDWIGTFEGHKG--AVWSCCLDANALFSASGSADFTAKLWDA 90 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~l-asgs~d~~v~iw~~~~~~~~~~l~gH~~--~V~~v~~~~~~~~l~s~s~Dg~v~vWd~ 90 (350)
+|...-+.|..+| ||.|+ |||..--.|++||+..-.+ .|+.|.. .|...-++.|-..++---.|.+|.+...
T Consensus 49 e~p~ast~ik~s~---DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSP---DGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred CCccccceeEecC---CCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhh
Confidence 5666677776665 99765 7777778899999865443 4566654 3444445555544444456777776542
Q ss_pred CCCCeeeeeeccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784 91 LTGDEKHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (350)
Q Consensus 91 ~~~~~~~~~~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~ 169 (350)
. | ....+.-+..-+.++++. +..++ .++....|.-++++.+.-... .....+.+.+|...+ ...+++.|+.||.
T Consensus 124 ~-G-~hy~~RIP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P-~~~~~~~lN~v~in~-~hgLla~Gt~~g~ 198 (703)
T KOG2321|consen 124 Y-G-RHYRTRIPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNP-FETDSGELNVVSINE-EHGLLACGTEDGV 198 (703)
T ss_pred c-C-eeeeeecCcCCccccccCCCccEE-EeecCcceEEEEccccccccc-cccccccceeeeecC-ccceEEecccCce
Confidence 2 1 111222334456666654 44444 444445566678876543322 223346677777654 4557788888999
Q ss_pred EEEEECCCCceeEeecCCC------------CeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeee--eecCCCCceeE
Q 018784 170 VRLWDARSGKIVQTLETKS------------PVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKG--YNMPCNTESAS 234 (350)
Q Consensus 170 i~iwd~~~~~~~~~~~~~~------------~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~--~~~~~~~~~~~ 234 (350)
|.+||.|....+..+.... .++++.|+.+|..++++ +.|.+.|||+|...++.. +........+.
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~ 278 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLD 278 (703)
T ss_pred EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeec
Confidence 9999999887766665332 38999999999877665 579999999998776533 22223333444
Q ss_pred ecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (350)
Q Consensus 235 ~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~ 299 (350)
+.+.++.--++......++|||-.+|+....+..- ..+..+|+-|++.+++++-.+..+..|-+
T Consensus 279 ~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 279 WQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred ccccCCCceEEecchHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEc
Confidence 44433333333344567999999999887666533 34999999999999999999988877754
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.5e-11 Score=114.51 Aligned_cols=212 Identities=15% Similarity=0.143 Sum_probs=137.2
Q ss_pred CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeC---CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCc
Q 018784 83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF---EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT 159 (350)
Q Consensus 83 g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~---d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (350)
..|.+||...........+...+.+.+|+|+++.|+..+. +..|.+||+..+.. .......+....+.|++++..
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCCE
Confidence 4699999865555555567778999999999999887764 34699999975542 222333444557789887777
Q ss_pred EEEEEeCCC--eEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc--CC--cEEEEECCCcceeeeeecCC-CCce
Q 018784 160 ILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD--GS--SVKFWDANHFGLVKGYNMPC-NTES 232 (350)
Q Consensus 160 ~~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~--~i~vwd~~~~~~~~~~~~~~-~~~~ 232 (350)
++++.+.++ .|++||+.+++...............|+|||+.++... ++ .|.++|+.+....+ +.... ....
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~~g~~~~~ 340 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTFQGNYNAR 340 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eecCCCCccC
Confidence 777766555 59999998887543322333345788999998776443 23 36777776654322 22222 2223
Q ss_pred eEecCCCCcEEEEecC-CC--eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCC---CcEEEecCC
Q 018784 233 ASLEPKLGNIFIAGGE-DM--WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSED---GTIRIWQTN 300 (350)
Q Consensus 233 ~~~~~~~~~~l~sg~~-d~--~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~D---g~v~vw~~~ 300 (350)
..+++ ++++++..+. ++ .|.+||+.+++.. .+. +........|+|||++++..+.+ ..|+++++.
T Consensus 341 ~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 341 ASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred EEECC-CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 45665 4666665433 32 6999999887654 332 22245567999999987765553 356777664
No 222
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.48 E-value=1.2e-10 Score=105.29 Aligned_cols=243 Identities=16% Similarity=0.150 Sum_probs=152.8
Q ss_pred EEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEe-eCCCeEEEeeCCCCCeeeee
Q 018784 21 DLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG-SADFTAKLWDALTGDEKHSF 99 (350)
Q Consensus 21 ~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~-s~Dg~v~vWd~~~~~~~~~~ 99 (350)
.+.|+| ||+++.+++.|+.+.++|+.+.+.+.++..-.+ -..+++++||++++.+ -.++.+.++|..+.+.+..+
T Consensus 41 ~~~~s~---Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 41 GLKFSP---DGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp EEE-TT----SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEE
T ss_pred EEEecC---CCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccceeec
Confidence 455664 999999999999999999999999998875443 4679999999988765 46899999999998877765
Q ss_pred ec--------cccEeEEEEcCCCCeEEEee-CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784 100 EH--------KHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (350)
Q Consensus 100 ~h--------~~~V~~~~~~~~~~~l~sg~-~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i 170 (350)
.- ...+.++..+|....++..- .-+.|.+-|......................|.++...++++...++.|
T Consensus 117 ~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i 196 (369)
T PF02239_consen 117 PTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKI 196 (369)
T ss_dssp E--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred ccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccccee
Confidence 31 23577888888887555544 4477877787655332222222344566777777666666766667788
Q ss_pred EEEECCCCceeEeecC-------------------------------------------------------CCCeEEEEE
Q 018784 171 RLWDARSGKIVQTLET-------------------------------------------------------KSPVTSAEV 195 (350)
Q Consensus 171 ~iwd~~~~~~~~~~~~-------------------------------------------------------~~~v~~~~~ 195 (350)
-++|.++++.+..+.. ...-..+..
T Consensus 197 ~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~t 276 (369)
T PF02239_consen 197 AVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKT 276 (369)
T ss_dssp EEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE-
T ss_pred EEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeec
Confidence 8888887765443210 001122345
Q ss_pred ecCCcEEEEE----c-CCcEEEEECCCcceeeeeecCCC--CceeEecCCCCcEEEEecCCC-eEEEEEcccCeeEEeec
Q 018784 196 SRDGRYITTA----D-GSSVKFWDANHFGLVKGYNMPCN--TESASLEPKLGNIFIAGGEDM-WVHVFDFHTGEQIGCNK 267 (350)
Q Consensus 196 ~~~~~~l~~~----~-~~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~sg~~d~-~i~v~d~~~~~~~~~~~ 267 (350)
+|+++++... . .+.|.++|.++...++.+..... ..-..+.+....+++|....+ .|.+||..+.+++..+.
T Consensus 277 hP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 277 HPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 7888887665 2 36899999999877665543222 334456665445666666655 89999999999887765
No 223
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.48 E-value=1.4e-12 Score=116.30 Aligned_cols=174 Identities=17% Similarity=0.181 Sum_probs=130.1
Q ss_pred eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCc-EEEEeeCCCeEEEeeCC
Q 018784 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDAL 91 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~-~l~s~s~Dg~v~vWd~~ 91 (350)
..|.+.+.+-.++| ||.-|+|++.||.|+||+ .+|-+..++.-...+|+|++|.|+.. .+.+.+..-.|+= +.
T Consensus 101 ~AH~~A~~~gRW~~---dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKp--L~ 174 (737)
T KOG1524|consen 101 SAHAAAISSGRWSP---DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKP--LA 174 (737)
T ss_pred hhhhhhhhhcccCC---CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEee--cc
Confidence 47888888887665 999999999999999998 56766667777778999999998765 4555444344433 32
Q ss_pred CCCeeee-eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784 92 TGDEKHS-FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (350)
Q Consensus 92 ~~~~~~~-~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i 170 (350)
.+..... -.|.+-|.++.|++...++++||.|-..++||.- .........|.-+|++++|.|+ ..++.++. +++
T Consensus 175 ~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~ 249 (737)
T KOG1524|consen 175 ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE--KDYLLWSY-NTA 249 (737)
T ss_pred cccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc--CcccccCChhccceeeeeeccc--cceeeeee-eee
Confidence 2222222 3699999999999999999999999999999964 3445556678889999999875 44555554 466
Q ss_pred EEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcC
Q 018784 171 RLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADG 207 (350)
Q Consensus 171 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 207 (350)
|+=.++. +.|..++|++||..++++..
T Consensus 250 R~~~p~~----------GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 250 RFSSPRV----------GSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred eecCCCc----------cceEEEEEcCCCceeecccc
Confidence 6433332 45788999999999987653
No 224
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.48 E-value=1.4e-10 Score=99.31 Aligned_cols=267 Identities=12% Similarity=0.141 Sum_probs=164.9
Q ss_pred eeEEEecccCCCccEEEEEeCCCC--eeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee
Q 018784 19 VVDLFYSPITPDGFFLVSASKDSS--PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK 96 (350)
Q Consensus 19 v~~~~~~~~s~dg~~lasgs~d~~--v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~ 96 (350)
|-.+-|+. .+||-.+.+.. +++.+.+++..+-.+. ...+|.+|.+..+ .|+..= ...|.|+|+.+.+.+
T Consensus 49 IvEmLFSS-----SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr~--RLvV~L-ee~IyIydI~~MklL 119 (391)
T KOG2110|consen 49 IVEMLFSS-----SLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNRK--RLVVCL-EESIYIYDIKDMKLL 119 (391)
T ss_pred EEEeeccc-----ceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEccc--eEEEEE-cccEEEEecccceee
Confidence 44555652 25665555444 7778776665544333 3467888888543 333332 344999999999888
Q ss_pred eeee----ccccEeEEEEcCCCCeEEEe-e-CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe-
Q 018784 97 HSFE----HKHIVRACAFSEDTHLLLTG-G-FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG- 169 (350)
Q Consensus 97 ~~~~----h~~~V~~~~~~~~~~~l~sg-~-~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~- 169 (350)
+++. +...+.++.+++.+.+++-- + ..|.|.+||+.+-+. ...+..|++.+.+++|+ +++.+++++++.|+
T Consensus 120 hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~-v~~I~aH~~~lAalafs-~~G~llATASeKGTV 197 (391)
T KOG2110|consen 120 HTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP-VNTINAHKGPLAALAFS-PDGTLLATASEKGTV 197 (391)
T ss_pred hhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee-eeEEEecCCceeEEEEC-CCCCEEEEeccCceE
Confidence 8774 34446666666666677753 2 358899999976443 34456899999999987 47789999999998
Q ss_pred EEEEECCCCceeEeecCC---CCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEE
Q 018784 170 VRLWDARSGKIVQTLETK---SPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA 245 (350)
Q Consensus 170 i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 245 (350)
||++.+.+|+.+.++... ..|.+++|+|++.+|++++ .++|++|-+.+... .....+.. ...+.... ..-++
T Consensus 198 IRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~-~~~~~p~~--~~~~~~~~-sk~~~ 273 (391)
T KOG2110|consen 198 IRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSN-NPPESPTA--GTSWFGKV-SKAAT 273 (391)
T ss_pred EEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccccc-CCCCCCCC--CCcccchh-hhhhh
Confidence 899999999988888643 4688999999999997664 57899998765331 11110000 00000000 00011
Q ss_pred ecCC-CeEEEEEcccCeeEEeecCCCc---CEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784 246 GGED-MWVHVFDFHTGEQIGCNKGHHG---PVHCVRFSPGGESYASGSEDGTIRIWQTNPP 302 (350)
Q Consensus 246 g~~d-~~i~v~d~~~~~~~~~~~~h~~---~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~ 302 (350)
+..- +.-.+||. .+...+.+.... .+..+.-.+..+.+..++.||.++.+.++..
T Consensus 274 sylps~V~~~~~~--~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 274 SYLPSQVSSVLDQ--SRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred hhcchhhhhhhhh--ccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 1000 11112332 222223322222 2333333356788999999999999999765
No 225
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1.5e-12 Score=116.99 Aligned_cols=190 Identities=21% Similarity=0.307 Sum_probs=145.3
Q ss_pred eEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee
Q 018784 20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF 99 (350)
Q Consensus 20 ~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~ 99 (350)
.+++++..+.| ++..|+. ..|.-.+++-|+++..|+--.+.+++|.+++-..+++.|+.||.|..||..+.....++
T Consensus 137 RDm~y~~~scD--ly~~gsg-~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l 213 (703)
T KOG2321|consen 137 RDMKYHKPSCD--LYLVGSG-SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTL 213 (703)
T ss_pred ccccccCCCcc--EEEeecC-cceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheee
Confidence 35666664444 5554444 45666789999999999988899999999999999999999999999998765544443
Q ss_pred e-------ccc-----cEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCC-CcEEEEEeC
Q 018784 100 E-------HKH-----IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSD-QTILSSCTD 166 (350)
Q Consensus 100 ~-------h~~-----~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~s~~~ 166 (350)
. |++ .|+++.|+.+|-.+++|..+|.+.|||+.........-....-+|..+.|.+.+ +..++|+ +
T Consensus 214 ~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-D 292 (703)
T KOG2321|consen 214 DAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-D 292 (703)
T ss_pred ecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-c
Confidence 2 322 499999999999999999999999999986554433333334567888887654 3455554 5
Q ss_pred CCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc-CCcEEEE
Q 018784 167 SGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFW 213 (350)
Q Consensus 167 dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~vw 213 (350)
...++|||-.+|+....+.....++.+|+-|++-++.++. +..+..|
T Consensus 293 k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 293 KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence 5799999999999999999988999999999876666664 3444444
No 226
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.45 E-value=9.8e-12 Score=105.39 Aligned_cols=241 Identities=17% Similarity=0.256 Sum_probs=161.4
Q ss_pred CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-Cc----eeeeccCccC------------CeEEEEECCCC--cEE
Q 018784 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-GD----WIGTFEGHKG------------AVWSCCLDANA--LFS 76 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~-~~----~~~~l~gH~~------------~V~~v~~~~~~--~~l 76 (350)
.+-|.+|-|.. +|.+||||..+|-|.++.-+. .+ ...++..|.. .|..+.|.+++ ..+
T Consensus 25 adiis~vef~~---~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVEFDH---YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hcceeeEEeec---ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 45677888875 899999999999998876322 11 3344544543 46677886654 345
Q ss_pred EEeeCCCeEEEeeCCCCCe-----------------------------------eeee--eccccEeEEEEcCCCCeEEE
Q 018784 77 ASGSADFTAKLWDALTGDE-----------------------------------KHSF--EHKHIVRACAFSEDTHLLLT 119 (350)
Q Consensus 77 ~s~s~Dg~v~vWd~~~~~~-----------------------------------~~~~--~h~~~V~~~~~~~~~~~l~s 119 (350)
.....|.+|++|.+..... +..+ .|+--++++.++.|.+.+++
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS 181 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS 181 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence 5667999999997642211 0111 16667899999999998887
Q ss_pred eeCCCeEEEEECCCCCCCCe--eecC-----CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeE----eecC--
Q 018784 120 GGFEKILRIFDLNRPDAPPR--EVGN-----SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ----TLET-- 186 (350)
Q Consensus 120 g~~d~~v~vwd~~~~~~~~~--~~~~-----~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~----~~~~-- 186 (350)
+ .|-.|.+|+++-...... ..++ ....|++..|.|....+++-.+.-|+|++.|+|.....- .+..
T Consensus 182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcccc
Confidence 5 477899999864332211 1111 123466667777666666666677999999999543210 0110
Q ss_pred -----------CCCeEEEEEecCCcEEEEEcCCcEEEEEC-CCcceeeeeecCCCC----------------ceeEecCC
Q 018784 187 -----------KSPVTSAEVSRDGRYITTADGSSVKFWDA-NHFGLVKGYNMPCNT----------------ESASLEPK 238 (350)
Q Consensus 187 -----------~~~v~~~~~~~~~~~l~~~~~~~i~vwd~-~~~~~~~~~~~~~~~----------------~~~~~~~~ 238 (350)
-..|..+.|+++|+|+.+-+=-+|++||+ ...+++.++++++.. ..++++.
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg- 339 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG- 339 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-
Confidence 13578899999999999887789999999 445677777654321 1223332
Q ss_pred CCcEEEEecCCCeEEEEEcccCe
Q 018784 239 LGNIFIAGGEDMWVHVFDFHTGE 261 (350)
Q Consensus 239 ~~~~l~sg~~d~~i~v~d~~~~~ 261 (350)
++.++++|+..+.+++|++..|.
T Consensus 340 ~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 340 NDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred CcceEecccccceEEEecCCCCc
Confidence 35699999999999999976654
No 227
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.45 E-value=2.9e-11 Score=104.10 Aligned_cols=259 Identities=15% Similarity=0.162 Sum_probs=167.9
Q ss_pred CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeec------cCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF------EGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (350)
Q Consensus 17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l------~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~ 90 (350)
..|..++|. ..+....+...+.|..+.+.+.+...+...+ .+-+++|..+.. ....|+++-.+|.+++|..
T Consensus 56 ~ris~l~~~-~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~--~dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 56 DRISSLLFG-VDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL--ADGTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhheee-cCCceeEeeccccCcccccccccCCccccccccccccccccccccchhh--cCCEEEEEecCCcEEEEec
Confidence 455666665 2333445555556777776666555544433 334455544433 3446678889999999998
Q ss_pred CCCC----eeeeeeccccEeEEEEcCCCC-eEEEeeCC--CeEEEEECCCCCCCCeeecC---------CCCcEEEEEEe
Q 018784 91 LTGD----EKHSFEHKHIVRACAFSEDTH-LLLTGGFE--KILRIFDLNRPDAPPREVGN---------SSGSIRTVAWL 154 (350)
Q Consensus 91 ~~~~----~~~~~~h~~~V~~~~~~~~~~-~l~sg~~d--~~v~vwd~~~~~~~~~~~~~---------~~~~v~~~~~~ 154 (350)
..+. .+..+.--..+..+.-++... ++++||.. ..+++||+....+... ... ..-+++.+.|.
T Consensus 133 k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~-aKNvpnD~L~LrVPvW~tdi~Fl 211 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS-AKNVPNDRLGLRVPVWITDIRFL 211 (412)
T ss_pred cCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeee-ccCCCCccccceeeeeeccceec
Confidence 7443 233333334566666666544 55668888 8899999976532211 111 12345667777
Q ss_pred CC-CCcEEEEEeCCCeEEEEECCCC-ceeEeecC-CCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeee-eec-CC
Q 018784 155 HS-DQTILSSCTDSGGVRLWDARSG-KIVQTLET-KSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKG-YNM-PC 228 (350)
Q Consensus 155 ~~-~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~-~~~-~~ 228 (350)
+. ....+++|+.-+.+++||++.+ +++.++.. ..++.++...|.++++.+++ -+.+..||+++.+.... +.. ..
T Consensus 212 ~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tG 291 (412)
T KOG3881|consen 212 EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITG 291 (412)
T ss_pred CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccC
Confidence 54 2567889999999999999876 46666664 67899999999999988776 57899999998876544 221 12
Q ss_pred CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCC
Q 018784 229 NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPG 281 (350)
Q Consensus 229 ~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~ 281 (350)
....+...+ ...++++++.|+.+||+|+.+..++... .-...++++-+.++
T Consensus 292 sirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 292 SIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILLRDD 342 (412)
T ss_pred CcceEEEcC-CCceEEeeccceeEEEeecccchhhhhh-hhhccccEEEecCC
Confidence 233444444 4689999999999999999986655322 12334566666554
No 228
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=4.5e-11 Score=102.07 Aligned_cols=237 Identities=14% Similarity=0.213 Sum_probs=154.9
Q ss_pred CeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeec--cccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCe
Q 018784 63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH--KHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPR 139 (350)
Q Consensus 63 ~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h--~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~ 139 (350)
.++.++|++.-..+|.+..|-.||++|... .+...+.+ ...|.+++|-|.+ ..|+.|+. +.|.+|..........
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccccc
Confidence 456788888777789999999999999765 45555544 4569999999965 45666665 4589998653221111
Q ss_pred ------------eecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee-cCCCCeEEEEEecCCcEEEEE-
Q 018784 140 ------------EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITTA- 205 (350)
Q Consensus 140 ------------~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~- 205 (350)
.....+..|+++.|.+++..++.+.-.|..|.|||+.++..+.-. .....+.-+.|+||+.++.++
T Consensus 178 ~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt 257 (445)
T KOG2139|consen 178 NIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT 257 (445)
T ss_pred ccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec
Confidence 111234679999998776666656667789999999998765544 456778889999999877554
Q ss_pred cCCcEEEEEC-CCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCe-------------eEEee-----
Q 018784 206 DGSSVKFWDA-NHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGE-------------QIGCN----- 266 (350)
Q Consensus 206 ~~~~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~-------------~~~~~----- 266 (350)
-|+..++|.. ++....+-...+.......+.|....+|.+.+..-.++-....... .+..+
T Consensus 258 ~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti 337 (445)
T KOG2139|consen 258 CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTI 337 (445)
T ss_pred ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhh
Confidence 5889999954 3333343333444555666777655566666655544433221111 01111
Q ss_pred -cC---CCcCEEEEEEcCCCCEEEEecCC--------CcEEEecCCC
Q 018784 267 -KG---HHGPVHCVRFSPGGESYASGSED--------GTIRIWQTNP 301 (350)
Q Consensus 267 -~~---h~~~v~~l~~sp~~~~lasgs~D--------g~v~vw~~~~ 301 (350)
.+ -.+.+.+|+|.|.|.+||+-=.. ..|.+||...
T Consensus 338 ~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 338 CAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred hcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 11 13578899999999999874332 3466677643
No 229
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.43 E-value=2e-09 Score=95.59 Aligned_cols=255 Identities=14% Similarity=0.150 Sum_probs=157.6
Q ss_pred CCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeC----------CCeEEEeeCCCCCeeeeeecccc------
Q 018784 41 SSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA----------DFTAKLWDALTGDEKHSFEHKHI------ 104 (350)
Q Consensus 41 ~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~----------Dg~v~vWd~~~~~~~~~~~h~~~------ 104 (350)
+++.+.|..+++.+.++..-..+- .+ +++|++.++.+.. +..|.+||..+.+....+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 789999999999998886433332 23 8999987776655 89999999999998877764332
Q ss_pred --EeEEEEcCCCCeEEEee-C-CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECC-CCc
Q 018784 105 --VRACAFSEDTHLLLTGG-F-EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR-SGK 179 (350)
Q Consensus 105 --V~~~~~~~~~~~l~sg~-~-d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~-~~~ 179 (350)
....+++|+|++|+... . +..|.+.|+.+.+........ +...-+.. .+...++-|. ||......+. +|+
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp--~~~~vy~t--~e~~~~~~~~-Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP--DCYHIFPT--ANDTFFMHCR-DGSLAKVGYGTKGN 179 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC--CCcEEEEe--cCCccEEEee-cCceEEEEecCCCc
Confidence 34889999999998765 3 789999999865433222111 11111111 1111222222 2333332221 121
Q ss_pred e-eEe---ecC------CCCeEEEEEec-CCcEEEEEcCCcEEEEECCCcc-----eeeeeec--------CCCCceeEe
Q 018784 180 I-VQT---LET------KSPVTSAEVSR-DGRYITTADGSSVKFWDANHFG-----LVKGYNM--------PCNTESASL 235 (350)
Q Consensus 180 ~-~~~---~~~------~~~v~~~~~~~-~~~~l~~~~~~~i~vwd~~~~~-----~~~~~~~--------~~~~~~~~~ 235 (350)
. ... +.. ..+ .+.+ +|+++..+..|.|.+.|+.... ....+.. +.....+.+
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred eEEeeeeeecCCccccccCC----ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 1 111 111 112 3344 7888877766999999964322 2222211 112223666
Q ss_pred cCCCCcEEEEec---------CCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCC-EEEEec-CCCcEEEecCCCCCc
Q 018784 236 EPKLGNIFIAGG---------EDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGE-SYASGS-EDGTIRIWQTNPPNH 304 (350)
Q Consensus 236 ~~~~~~~l~sg~---------~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~-~lasgs-~Dg~v~vw~~~~~~~ 304 (350)
.+..+++++... ..+.|.++|..+++.+..+.. ...++.++++||++ +|+... .++.|.+.|....+.
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 666556666331 225899999999998887653 33689999999998 776555 688899999877665
Q ss_pred ccC
Q 018784 305 EEN 307 (350)
Q Consensus 305 ~~~ 307 (350)
...
T Consensus 335 i~~ 337 (352)
T TIGR02658 335 LSS 337 (352)
T ss_pred Eee
Confidence 543
No 230
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.2e-09 Score=98.31 Aligned_cols=276 Identities=16% Similarity=0.216 Sum_probs=176.3
Q ss_pred CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEe-----eCC-----CeEE
Q 018784 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG-----SAD-----FTAK 86 (350)
Q Consensus 17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~-----s~D-----g~v~ 86 (350)
.+....+|++ +|+++|- +.+..++|++..+...+.+...- .++.+.|+|.+.+|.|= -.| ..++
T Consensus 35 ~~~~v~~~S~---~G~lfA~-~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 35 RPCNVFAYSN---NGRLFAY-SDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CcceeEEEcC---CCcEEEE-EcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCcee
Confidence 3444555554 8888876 45578899998887544444332 67888999999888642 222 4467
Q ss_pred EeeCCCCCeeeeee-----------------------------------------ccccEeEEEEcCCC--CeEEE----
Q 018784 87 LWDALTGDEKHSFE-----------------------------------------HKHIVRACAFSEDT--HLLLT---- 119 (350)
Q Consensus 87 vWd~~~~~~~~~~~-----------------------------------------h~~~V~~~~~~~~~--~~l~s---- 119 (350)
+|+++++.....+. |...+....++|.+ ..+|+
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 99887743311110 33446666777652 34443
Q ss_pred -eeCCCeEEEEECCC--CCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe-----------CCCeEEEEECCCCceeEeec
Q 018784 120 -GGFEKILRIFDLNR--PDAPPREVGNSSGSIRTVAWLHSDQTILSSCT-----------DSGGVRLWDARSGKIVQTLE 185 (350)
Q Consensus 120 -g~~d~~v~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-----------~dg~i~iwd~~~~~~~~~~~ 185 (350)
.|.=..|+||.... ...+.....-....-..+.|.+-+..+|+-.+ ...++++.++....+...+.
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~ 268 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL 268 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC
Confidence 34556788887651 11111111111223345667665554443221 23479999988667777888
Q ss_pred CCCCeEEEEEecCCcEEEEEcC---CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC---CCeEEEEEccc
Q 018784 186 TKSPVTSAEVSRDGRYITTADG---SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE---DMWVHVFDFHT 259 (350)
Q Consensus 186 ~~~~v~~~~~~~~~~~l~~~~~---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~---d~~i~v~d~~~ 259 (350)
..++|.++.|+++++-++..-+ ..+.|||++.. + .+.++..+....+..+.+++++.++- .|.|.+||..+
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~--v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-P--VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-E--eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 8899999999999987655433 47889998643 2 23444455555555557888888775 46899999998
Q ss_pred CeeEEeecCCCcCEEEEEEcCCCCEEEEecC------CCcEEEecCCCCC
Q 018784 260 GEQIGCNKGHHGPVHCVRFSPGGESYASGSE------DGTIRIWQTNPPN 303 (350)
Q Consensus 260 ~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~------Dg~v~vw~~~~~~ 303 (350)
.+++..+..-.. +-..|+|||++++|+.. |.-++||++....
T Consensus 346 ~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 346 RKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred hhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce
Confidence 777766654333 45789999999987664 7889999986433
No 231
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=3e-11 Score=115.51 Aligned_cols=146 Identities=20% Similarity=0.301 Sum_probs=121.3
Q ss_pred CCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee--eeeccccE
Q 018784 28 TPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH--SFEHKHIV 105 (350)
Q Consensus 28 s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~--~~~h~~~V 105 (350)
+++.-++++|+.-+.+.+|+..--+.-..+.||.+.|..+.++.+|.+++|.|.|.++|+|++.+++... -+.|+..|
T Consensus 142 s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv 221 (967)
T KOG0974|consen 142 SAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARV 221 (967)
T ss_pred cCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccccee
Confidence 3456689999999999999976333333689999999999999999999999999999999999887554 46899999
Q ss_pred eEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC
Q 018784 106 RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177 (350)
Q Consensus 106 ~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~ 177 (350)
..+.|+|+ .++|++.|-+.++|+.+..+.. ...++....++.++. +.+..+++++++|+.+++||...
T Consensus 222 w~~~~~~n--~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~-~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 222 WACCFLPN--RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAV-PIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEEEeccc--eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEE-cCCceEEEeeccCcchhhhhhhc
Confidence 99999999 8999999999999987643332 444555667888875 46778899999999999999754
No 232
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.39 E-value=5.1e-12 Score=103.43 Aligned_cols=158 Identities=15% Similarity=0.209 Sum_probs=118.5
Q ss_pred ccCCceeEEEecccCCCc-cEEEEEeCCCCeeEeeCCCC----------ceeeeccCccCCeEEEEECCCCcEEEEeeCC
Q 018784 14 GHSRPVVDLFYSPITPDG-FFLVSASKDSSPMLRNGETG----------DWIGTFEGHKGAVWSCCLDANALFSASGSAD 82 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg-~~lasgs~d~~v~iw~~~~~----------~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D 82 (350)
+-.+.+.+.... ..-.. .+|+.|=.+|.+.+||..++ +.......|+.+|.++.+.+....-++|+.+
T Consensus 148 ~Klgsvmc~~~~-~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~ 226 (323)
T KOG0322|consen 148 SKLGSVMCQDKD-HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGAD 226 (323)
T ss_pred cccCceeeeecc-ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcc
Confidence 445566655422 22222 35566778999999999887 3444556799999999998877777899999
Q ss_pred CeEEEeeCCCC--Ceee----eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCC
Q 018784 83 FTAKLWDALTG--DEKH----SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS 156 (350)
Q Consensus 83 g~v~vWd~~~~--~~~~----~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 156 (350)
..+.+|.+... .... .+.| ..|..+..-||++++||+|+|+.||||...+.... ..+.-|.+.|.+++|+++
T Consensus 227 dkl~~~Sl~~s~gslq~~~e~~lkn-pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL-AVLkyHsagvn~vAfspd 304 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRKEITLKN-PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL-AVLKYHSAGVNAVAFSPD 304 (323)
T ss_pred ccceeeeeccccCcccccceEEecC-CCccceEEccCCcEEeecccCCcEEEEEeccCCch-hhhhhhhcceeEEEeCCC
Confidence 99999987533 2221 2223 35888999999999999999999999998765543 344667899999999864
Q ss_pred CCcEEEEEeCCCeEEEEEC
Q 018784 157 DQTILSSCTDSGGVRLWDA 175 (350)
Q Consensus 157 ~~~~~~s~~~dg~i~iwd~ 175 (350)
..++++++.|+.|.+|++
T Consensus 305 -~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 305 -CELMAAASKDARISLWKL 322 (323)
T ss_pred -CchhhhccCCceEEeeec
Confidence 567888999999999986
No 233
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=3e-10 Score=105.58 Aligned_cols=229 Identities=17% Similarity=0.118 Sum_probs=137.7
Q ss_pred CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC---CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE
Q 018784 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL 118 (350)
Q Consensus 42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D---g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~ 118 (350)
.+.++|... ...+.+..+...+....|+|++++++..+.+ ..|.+||+.+++......+...+.+++|+|+++.|+
T Consensus 171 ~l~~~d~~g-~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 171 ELQVADYDG-ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLA 249 (417)
T ss_pred eEEEEcCCC-CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 466777643 3345566677778899999999988876544 479999998886655555666677899999998775
Q ss_pred -EeeCCC--eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC--eEEEEECCCCceeEeecCCCCeEEE
Q 018784 119 -TGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSA 193 (350)
Q Consensus 119 -sg~~d~--~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~ 193 (350)
+.+.++ .|.+||+.++.. .....+........|++++..++++...++ .|.++|+.+++..............
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~~--~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~ 327 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQL--TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASP 327 (417)
T ss_pred EEECCCCCccEEEEECCCCCE--EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCe
Confidence 444444 588888875432 222233333446678876666665544443 5888888877654333334456678
Q ss_pred EEecCCcEEEEEc-CC---cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCC---eEEEEEcccCeeEEee
Q 018784 194 EVSRDGRYITTAD-GS---SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM---WVHVFDFHTGEQIGCN 266 (350)
Q Consensus 194 ~~~~~~~~l~~~~-~~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~---~i~v~d~~~~~~~~~~ 266 (350)
.|+|++++++... +. .|.+||+.+... +.+..........+.+ +++.|+..+.++ .+++.+. ++.....+
T Consensus 328 ~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~p~~sp-dg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~ 404 (417)
T TIGR02800 328 SWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTGLDESPSFAP-NGRMILYATTRGGRGVLGLVST-DGRFRARL 404 (417)
T ss_pred EECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCCCCCCceECC-CCCEEEEEEeCCCcEEEEEEEC-CCceeeEC
Confidence 8999998876543 32 688899876432 2222122222334555 455555555443 3444443 34444334
Q ss_pred cCCCcCEEEE
Q 018784 267 KGHHGPVHCV 276 (350)
Q Consensus 267 ~~h~~~v~~l 276 (350)
..+.+.+...
T Consensus 405 ~~~~g~~~~~ 414 (417)
T TIGR02800 405 PLGNGDVREP 414 (417)
T ss_pred CCCCCCcCCC
Confidence 3333334333
No 234
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=4.5e-10 Score=104.87 Aligned_cols=233 Identities=14% Similarity=0.101 Sum_probs=138.9
Q ss_pred CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeC-CC--eEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE
Q 018784 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA-DF--TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL 118 (350)
Q Consensus 42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~-Dg--~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~ 118 (350)
.+.++|...... +.+..+...+....|+|||+.++-.+. ++ .|.+||+.+++.......+......+|+|+|+.|+
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La 277 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLA 277 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEE
Confidence 455566544333 345556678888999999998775543 33 58888988776543322333445789999999776
Q ss_pred E-eeCCCe--EEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC--eEEEEECCCCceeEeecCCCCeEEE
Q 018784 119 T-GGFEKI--LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSA 193 (350)
Q Consensus 119 s-g~~d~~--v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~ 193 (350)
. .+.++. |.++|+.++.. .....+........|++++..++.+...++ .|.++|+.+++..............
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~~--~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~ 355 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKAL--TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGG 355 (448)
T ss_pred EEEeCCCCeEEEEEECCCCCe--EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCe
Confidence 4 555665 66678765432 223333445567889887777776665444 4666788777643321122223456
Q ss_pred EEecCCcEEEEEc--CC--cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEE-ecCCCe--EEEEEcccCeeEEee
Q 018784 194 EVSRDGRYITTAD--GS--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA-GGEDMW--VHVFDFHTGEQIGCN 266 (350)
Q Consensus 194 ~~~~~~~~l~~~~--~~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-g~~d~~--i~v~d~~~~~~~~~~ 266 (350)
.|+|||++++... ++ .|.++|+.+..... +..........+.++ ++.++. ...++. +++++. +|.....+
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spd-G~~I~~~~~~~g~~~l~~~~~-~G~~~~~l 432 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPN-GTMVIYSTTYQGKQVLAAVSI-DGRFKARL 432 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCCCCCCceECCC-CCEEEEEEecCCceEEEEEEC-CCCceEEC
Confidence 8999998875432 33 45667877654322 221111223355654 555444 444443 667776 56655566
Q ss_pred cCCCcCEEEEEEcC
Q 018784 267 KGHHGPVHCVRFSP 280 (350)
Q Consensus 267 ~~h~~~v~~l~~sp 280 (350)
..+.+.+...+|+|
T Consensus 433 ~~~~g~~~~p~Wsp 446 (448)
T PRK04792 433 PAGQGEVKSPAWSP 446 (448)
T ss_pred cCCCCCcCCCccCC
Confidence 66666677778876
No 235
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.38 E-value=1.8e-12 Score=115.54 Aligned_cols=93 Identities=20% Similarity=0.368 Sum_probs=83.9
Q ss_pred CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe
Q 018784 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE 95 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~ 95 (350)
+++|...+|+| ||++||+.|.||.+||++..+.+++..++.--+...||+|+|||+++++||.|-.|.||....++.
T Consensus 290 ~g~in~f~FS~---DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRV 366 (636)
T KOG2394|consen 290 EGSINEFAFSP---DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRV 366 (636)
T ss_pred cccccceeEcC---CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceE
Confidence 45888888886 999999999999999999999999888888889999999999999999999999999999988776
Q ss_pred eee-eeccccEeEEEEc
Q 018784 96 KHS-FEHKHIVRACAFS 111 (350)
Q Consensus 96 ~~~-~~h~~~V~~~~~~ 111 (350)
+.. ..|+..|..++|.
T Consensus 367 VARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 367 VARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEeccccccceeeEeec
Confidence 554 3699999999997
No 236
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=2.7e-10 Score=105.87 Aligned_cols=203 Identities=20% Similarity=0.255 Sum_probs=127.0
Q ss_pred CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCC---CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCc
Q 018784 83 FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT 159 (350)
Q Consensus 83 g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d---~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (350)
..|.+||...........+...+.+.+|+|+|+.|+..+.+ ..|.+||+.++.. .......+......|+|++..
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~~ 253 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGRT 253 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCCE
Confidence 46777776443334445677789999999999998876643 4599999976543 222333455668889987777
Q ss_pred EEEEEeCCCeEEEEE--CCCCceeEeecC-CCCeEEEEEecCCcEEEE-Ec-CCcEEEEE--CCCcceeeeeecCC-CCc
Q 018784 160 ILSSCTDSGGVRLWD--ARSGKIVQTLET-KSPVTSAEVSRDGRYITT-AD-GSSVKFWD--ANHFGLVKGYNMPC-NTE 231 (350)
Q Consensus 160 ~~~s~~~dg~i~iwd--~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~-~~-~~~i~vwd--~~~~~~~~~~~~~~-~~~ 231 (350)
++++...++...+|. +.++. ...+.. ........|+|||+.++. ++ ++...+|. +.+... +...... ...
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~ 331 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNT 331 (427)
T ss_pred EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcC
Confidence 777777787766664 44444 334433 233456789999987654 33 34555554 444332 2222222 122
Q ss_pred eeEecCCCCcEEEEecCCC---eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCC
Q 018784 232 SASLEPKLGNIFIAGGEDM---WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292 (350)
Q Consensus 232 ~~~~~~~~~~~l~sg~~d~---~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg 292 (350)
...+.| ++++++..+.++ .|++||+.+++... +.. ........|+||+++|+..+.++
T Consensus 332 ~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 332 SPRISP-DGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred ceEECC-CCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCCEEEEEEecC
Confidence 345555 577777655443 69999998876543 322 22346789999999987766543
No 237
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.37 E-value=1.3e-10 Score=97.84 Aligned_cols=219 Identities=16% Similarity=0.215 Sum_probs=155.9
Q ss_pred ccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC---eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEEEEECC-CC
Q 018784 60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGD---EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLN-RP 134 (350)
Q Consensus 60 H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~---~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~-~~ 134 (350)
-..+|+|-+|++|...+|.+-....|-|+.....+ ..+++ .|...|+.++|+|..+.|++++.|+.-.+|... .+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 34789999999999999999999999999876554 34444 488999999999999999999999999999883 33
Q ss_pred CCCC-eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEe-----ecCCCCeEEEEEecCCcEEEEE-cC
Q 018784 135 DAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT-----LETKSPVTSAEVSRDGRYITTA-DG 207 (350)
Q Consensus 135 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~-~~ 207 (350)
...+ -.+..+....+++.|+|..++ +++|+.-+.|.+|=.+...--.. ....+.|+++.|+|++-+++++ .|
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enk-FAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENK-FAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCce-EEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 2222 234567788999999976665 45566668899987765543321 1234678999999999887665 58
Q ss_pred CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEE
Q 018784 208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYAS 287 (350)
Q Consensus 208 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~las 287 (350)
+.+|++... ++...-..... |- +. + +.-|++...+....++|..+.|+|+|..|+=
T Consensus 168 ~k~rVfSay----IK~Vdekpap~-----pW-gs---------k-----~PFG~lm~E~~~~ggwvh~v~fs~sG~~law 223 (361)
T KOG1523|consen 168 GKCRVFSAY----IKGVDEKPAPT-----PW-GS---------K-----MPFGQLMSEASSSGGWVHGVLFSPSGNRLAW 223 (361)
T ss_pred cceeEEEEe----eeccccCCCCC-----CC-cc---------C-----CcHHHHHHhhccCCCceeeeEeCCCCCEeeE
Confidence 889988642 22221111000 00 00 0 0112223333345678999999999999999
Q ss_pred ecCCCcEEEecCCCCC
Q 018784 288 GSEDGTIRIWQTNPPN 303 (350)
Q Consensus 288 gs~Dg~v~vw~~~~~~ 303 (350)
.+.|..|.+=|...+.
T Consensus 224 v~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 224 VGHDSTVSFVDAAGPS 239 (361)
T ss_pred ecCCCceEEeecCCCc
Confidence 9999999999987665
No 238
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=9.6e-09 Score=92.87 Aligned_cols=259 Identities=13% Similarity=0.122 Sum_probs=161.0
Q ss_pred CCeeEeeC--CCCceee--eccCccCCeEEEEECCCCcEEEEeeC----CCeEEEeeCCCC-Ceee---eee-ccccEeE
Q 018784 41 SSPMLRNG--ETGDWIG--TFEGHKGAVWSCCLDANALFSASGSA----DFTAKLWDALTG-DEKH---SFE-HKHIVRA 107 (350)
Q Consensus 41 ~~v~iw~~--~~~~~~~--~l~gH~~~V~~v~~~~~~~~l~s~s~----Dg~v~vWd~~~~-~~~~---~~~-h~~~V~~ 107 (350)
+.|..++. +++++.. .+..- ..-.-+++++++.+|.+... ++.|..|.+... ..+. ... .......
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~-~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~ 91 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEG-ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCH 91 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEES-SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCC-CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEE
Confidence 56776665 4554422 22111 22234678899988877765 579999987654 2222 222 3345678
Q ss_pred EEEcCCCCeEEEee-CCCeEEEEECCCCCCCCee---e----------cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEE
Q 018784 108 CAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPRE---V----------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173 (350)
Q Consensus 108 ~~~~~~~~~l~sg~-~d~~v~vwd~~~~~~~~~~---~----------~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iw 173 (350)
++++|++++|+++. .++.|.++++......... . ........++.+.|+++.++++.-....|.+|
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~ 171 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVY 171 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEE
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEE
Confidence 99999999998886 4899999999763222111 1 01235577888887767677766556689999
Q ss_pred ECCCCc--ee--E--eecCCCCeEEEEEecCCcEEEEEc--CCcEEEEECC--Ccc--eeeeeec-CC------CCceeE
Q 018784 174 DARSGK--IV--Q--TLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDAN--HFG--LVKGYNM-PC------NTESAS 234 (350)
Q Consensus 174 d~~~~~--~~--~--~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~--~~~--~~~~~~~-~~------~~~~~~ 234 (350)
++.... .. . .+........+.|+|+++++.... ++.|.+++.. ++. .+..... +. ....+.
T Consensus 172 ~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA 251 (345)
T ss_dssp EE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred EEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence 987654 31 2 234456788999999999876553 5789998877 332 2222221 11 123445
Q ss_pred ecCCCCcEEEEecCCCeEEEEEcc--cCee--EEeecCCCcCEEEEEEcCCCCEEEEec-CCCcEEEecCC
Q 018784 235 LEPKLGNIFIAGGEDMWVHVFDFH--TGEQ--IGCNKGHHGPVHCVRFSPGGESYASGS-EDGTIRIWQTN 300 (350)
Q Consensus 235 ~~~~~~~~l~sg~~d~~i~v~d~~--~~~~--~~~~~~h~~~v~~l~~sp~~~~lasgs-~Dg~v~vw~~~ 300 (350)
+.++...++++....+.|.+|++. ++.. +............++++|+|++|+.+. .++.|.+|+++
T Consensus 252 ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 252 ISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp E-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 666544456666678899999993 3433 333333344589999999999987665 66799999874
No 239
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=1.8e-10 Score=98.50 Aligned_cols=189 Identities=18% Similarity=0.256 Sum_probs=132.3
Q ss_pred ccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC----C
Q 018784 103 HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS----G 178 (350)
Q Consensus 103 ~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~----~ 178 (350)
-.++.++||+.-..++++..|.+|++|+-.. +.+..........|.+++|-|-....++.|-. +-|.+|.... +
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccc
Confidence 3578899999777788999999999999765 55555555566789999999887776665544 5799997532 1
Q ss_pred cee----------EeecCCCCeEEEEEecCCcEEEEEc--CCcEEEEECCCcceeeeeecC-CCCceeEecCCCCcEEEE
Q 018784 179 KIV----------QTLETKSPVTSAEVSRDGRYITTAD--GSSVKFWDANHFGLVKGYNMP-CNTESASLEPKLGNIFIA 245 (350)
Q Consensus 179 ~~~----------~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~s 245 (350)
+.+ ..-..+.+|+++.|++||..+++++ +..|.+||..++..+.-.... .......++| ++.+|.+
T Consensus 177 r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfa 255 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFA 255 (445)
T ss_pred cccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEE
Confidence 211 1122457899999999999887764 678999999887654433222 2223445555 6899999
Q ss_pred ecCCCeEEEEEccc-CeeEEeecCCCcCEEEEEEcCCCCEEE-EecCCCcEE
Q 018784 246 GGEDMWVHVFDFHT-GEQIGCNKGHHGPVHCVRFSPGGESYA-SGSEDGTIR 295 (350)
Q Consensus 246 g~~d~~i~v~d~~~-~~~~~~~~~h~~~v~~l~~sp~~~~la-sgs~Dg~v~ 295 (350)
++-|+..++|+... .....-.- -++.|...+|+|+|++|. +.+..-+|+
T Consensus 256 At~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~ly 306 (445)
T KOG2139|consen 256 ATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLY 306 (445)
T ss_pred ecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEE
Confidence 99999999997543 23322222 334899999999998864 444443333
No 240
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=1.1e-09 Score=102.26 Aligned_cols=232 Identities=15% Similarity=0.092 Sum_probs=141.7
Q ss_pred eeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC---CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE-
Q 018784 43 PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL- 118 (350)
Q Consensus 43 v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D---g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~- 118 (350)
+.++|...+. ...+..|...+....|+|+++.++..+.+ ..|.+||+.+++........+.+....|+|+|+.|+
T Consensus 181 l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 181 LQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred EEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEE
Confidence 6666765444 34555677788899999999987765533 468889998886554433444556789999999876
Q ss_pred EeeCCC--eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC--eEEEEECCCCceeEeecCCCCeEEEE
Q 018784 119 TGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAE 194 (350)
Q Consensus 119 sg~~d~--~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~ 194 (350)
+...++ .|.+||+.++.. ..+..+........|++++..++.+...++ .|.++|+.+++...............
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~--~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~ 337 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQL--SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPR 337 (430)
T ss_pred EEccCCCceEEEEECCCCCe--EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceE
Confidence 444444 577788875432 222333444556788877777766654444 57778887776433222222234567
Q ss_pred EecCCcEEEEEc--CC--cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC-CC--eEEEEEcccCeeEEeec
Q 018784 195 VSRDGRYITTAD--GS--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE-DM--WVHVFDFHTGEQIGCNK 267 (350)
Q Consensus 195 ~~~~~~~l~~~~--~~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-d~--~i~v~d~~~~~~~~~~~ 267 (350)
|+|+|++++... ++ .|.+||+.+..... +..........+.+ +++.++..+. ++ .|+++++. +.....+.
T Consensus 338 ~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~~~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~ 414 (430)
T PRK00178 338 LSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTDTSLDESPSVAP-NGTMLIYATRQQGRGVLMLVSIN-GRVRLPLP 414 (430)
T ss_pred ECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccCCCCCCCceECC-CCCEEEEEEecCCceEEEEEECC-CCceEECc
Confidence 999998876542 22 58889987765322 22221223345665 4566555443 33 46666664 33333444
Q ss_pred CCCcCEEEEEEcC
Q 018784 268 GHHGPVHCVRFSP 280 (350)
Q Consensus 268 ~h~~~v~~l~~sp 280 (350)
.+.+.+...+|+|
T Consensus 415 ~~~g~~~~p~ws~ 427 (430)
T PRK00178 415 TAQGEVREPSWSP 427 (430)
T ss_pred CCCCCcCCCccCC
Confidence 4555666677776
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.35 E-value=3.1e-11 Score=99.42 Aligned_cols=111 Identities=19% Similarity=0.283 Sum_probs=89.8
Q ss_pred cCCceeEEEecccCCCccEEE--EEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC---CeEEEee
Q 018784 15 HSRPVVDLFYSPITPDGFFLV--SASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD---FTAKLWD 89 (350)
Q Consensus 15 H~~~v~~~~~~~~s~dg~~la--sgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D---g~v~vWd 89 (350)
..++|.+++|+| +|..+| .|..+..+.|||.+ ++.+.++. ...+..+.|+|+|++++.++.+ |.+.+||
T Consensus 58 ~~~~I~~~~WsP---~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSP---NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECc---CCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 456799999987 776654 35567899999986 66766764 4677889999999999998754 6799999
Q ss_pred CCCCCeeeeeeccccEeEEEEcCCCCeEEEeeC------CCeEEEEECC
Q 018784 90 ALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF------EKILRIFDLN 132 (350)
Q Consensus 90 ~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~------d~~v~vwd~~ 132 (350)
..+.+.+....|.. +..++|+|+|++|+++.. |..++||+..
T Consensus 132 ~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 132 VRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 99887777777765 679999999999998764 7889999875
No 242
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.34 E-value=6.1e-10 Score=103.55 Aligned_cols=205 Identities=18% Similarity=0.209 Sum_probs=131.3
Q ss_pred CCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCC---CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCC
Q 018784 82 DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158 (350)
Q Consensus 82 Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d---~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 158 (350)
...|.++|...........+...+...+|+|+|++|+.+..+ ..|.+||+.++.. .......+.+..+.|++++.
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence 346788887655555555666678899999999999876543 4799999976532 22233445566788988777
Q ss_pred cEEEEEeCCC--eEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE-Ec-CC--cEEEEECCCcceeeeeecC-CCCc
Q 018784 159 TILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD-GS--SVKFWDANHFGLVKGYNMP-CNTE 231 (350)
Q Consensus 159 ~~~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-~~--~i~vwd~~~~~~~~~~~~~-~~~~ 231 (350)
.++++...++ .|.+||+.+++...............|+|+++.|+. ++ ++ .|.++|+.+....+ +... ....
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~~ 325 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYNA 325 (417)
T ss_pred EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCcc
Confidence 7777665544 589999988765433333333446789999987654 33 22 57888887654322 2222 2223
Q ss_pred eeEecCCCCcEEEEecCCC---eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCC
Q 018784 232 SASLEPKLGNIFIAGGEDM---WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292 (350)
Q Consensus 232 ~~~~~~~~~~~l~sg~~d~---~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg 292 (350)
...+.+ ++++++..+.++ .|.+||+.++... .+... .......|+|++++|+..+.++
T Consensus 326 ~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 326 SPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred CeEECC-CCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 345555 467777766665 7888998876443 22221 2234568999999887766654
No 243
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=7.6e-12 Score=112.18 Aligned_cols=240 Identities=19% Similarity=0.287 Sum_probs=163.1
Q ss_pred eeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC-------CCCeeeee-eccccEeEEEEcCCCCeEEEeeCCCe
Q 018784 54 IGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL-------TGDEKHSF-EHKHIVRACAFSEDTHLLLTGGFEKI 125 (350)
Q Consensus 54 ~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~-------~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~ 125 (350)
+..+.||+..|++++--.+..-++++|.|++|++|.+. +..++.++ .|+..|..+.|-.+-..+++ -|+.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCc
Confidence 34678999999988765666777999999999999863 22345554 59999999999988877764 5788
Q ss_pred EEEEECCCCCCCC-eeecCCCCcEEEEEEeCC-CC-cEEEEEeCCCeEEEEECCCCceeEeecC------CCCeEEEEEe
Q 018784 126 LRIFDLNRPDAPP-REVGNSSGSIRTVAWLHS-DQ-TILSSCTDSGGVRLWDARSGKIVQTLET------KSPVTSAEVS 196 (350)
Q Consensus 126 v~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~-~~-~~~~s~~~dg~i~iwd~~~~~~~~~~~~------~~~v~~~~~~ 196 (350)
|.+||.--+.... .......+.+..+...+. +. .+++.|+...+|+++|.|+++-...++. +.-+.++++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999975443322 111222333444444444 33 3455668889999999999876555542 2347788899
Q ss_pred cCCcEEEEE-cCCcEEEEECCCcceeeeee-cCCCCceeEecCCCCcEEEEecCCCeEEE-EEcccCeeEEeecCCCcCE
Q 018784 197 RDGRYITTA-DGSSVKFWDANHFGLVKGYN-MPCNTESASLEPKLGNIFIAGGEDMWVHV-FDFHTGEQIGCNKGHHGPV 273 (350)
Q Consensus 197 ~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~d~~i~v-~d~~~~~~~~~~~~h~~~v 273 (350)
+.|+.++++ +.|.|-+.|.|+++.++... +.|. ...+..+..+.++....|.++.+ |...+|......+....+.
T Consensus 886 ~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecd--llqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppepa 963 (1034)
T KOG4190|consen 886 DKGNKLAAALSNGCIAILDARNGKVINSWRPMECD--LLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPEPA 963 (1034)
T ss_pred cCcchhhHHhcCCcEEEEecCCCceeccCCcccch--hhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCcch
Confidence 999888765 67899999999998776542 2222 12222334567777788898888 9877777665554443333
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEecC
Q 018784 274 HCVRFSPGGESYASGSEDGTIRIWQT 299 (350)
Q Consensus 274 ~~l~~sp~~~~lasgs~Dg~v~vw~~ 299 (350)
.-+ ..-|+.|++.-....+.+|.-
T Consensus 964 hfl--qsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 964 HFL--QSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred hhh--hccCceeEEeccCcEEEEEec
Confidence 222 234677888777778888853
No 244
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.34 E-value=2e-10 Score=94.59 Aligned_cols=152 Identities=20% Similarity=0.305 Sum_probs=99.8
Q ss_pred cCCCccEEEEEeC---CC-------CeeEeeC-CCCceeeeccC-ccCCeEEEEECCCCcEEE--EeeCCCeEEEeeCCC
Q 018784 27 ITPDGFFLVSASK---DS-------SPMLRNG-ETGDWIGTFEG-HKGAVWSCCLDANALFSA--SGSADFTAKLWDALT 92 (350)
Q Consensus 27 ~s~dg~~lasgs~---d~-------~v~iw~~-~~~~~~~~l~g-H~~~V~~v~~~~~~~~l~--s~s~Dg~v~vWd~~~ 92 (350)
+++.|.+|+.-.. |. ...||.+ ........++- ..++|..++|+|++..+| +|..+..|.+||+.
T Consensus 13 W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~- 91 (194)
T PF08662_consen 13 WQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK- 91 (194)
T ss_pred ecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-
Confidence 4458866644332 22 2344444 22333444432 345799999999998754 35577899999996
Q ss_pred CCeeeeeeccccEeEEEEcCCCCeEEEeeCC---CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe----
Q 018784 93 GDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT---- 165 (350)
Q Consensus 93 ~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d---~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~---- 165 (350)
++.+..+. ...+..+.|+|+|++|++++.+ |.+.+||+.+.+... ......+..++|+|++..++++.+
T Consensus 92 ~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~---~~~~~~~t~~~WsPdGr~~~ta~t~~r~ 167 (194)
T PF08662_consen 92 GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS---TFEHSDATDVEWSPDGRYLATATTSPRL 167 (194)
T ss_pred ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee---ccccCcEEEEEEcCCCCEEEEEEeccce
Confidence 55555553 4567899999999999998754 669999998543322 222345789999987666555444
Q ss_pred -CCCeEEEEECCCCceeEee
Q 018784 166 -DSGGVRLWDARSGKIVQTL 184 (350)
Q Consensus 166 -~dg~i~iwd~~~~~~~~~~ 184 (350)
.|+.++||+.. |+.+...
T Consensus 168 ~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 168 RVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred eccccEEEEEec-CeEeEec
Confidence 37889999974 6655443
No 245
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.33 E-value=1.1e-10 Score=104.44 Aligned_cols=197 Identities=20% Similarity=0.218 Sum_probs=116.6
Q ss_pred cCCCccEEEEEeCCCCeeEeeCCCCceeeec--cCc--cCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCCCeeeeeec
Q 018784 27 ITPDGFFLVSASKDSSPMLRNGETGDWIGTF--EGH--KGAVWSCCLDA-NALFSASGSADFTAKLWDALTGDEKHSFEH 101 (350)
Q Consensus 27 ~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l--~gH--~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h 101 (350)
-+|.|--|+.|=.-|.+.+.|....+..+-+ +++ +.+|+++.|-+ +..++..+=.+|.+.++|.+-. ...
T Consensus 181 a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----~~~ 255 (636)
T KOG2394|consen 181 ATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----CGA 255 (636)
T ss_pred cCCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----ccC
Confidence 3456666677777788888886554333222 233 36788999865 3344455567888888886211 000
Q ss_pred cccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCcee
Q 018784 102 KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV 181 (350)
Q Consensus 102 ~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~ 181 (350)
+. .+-...+++..+... .|.-.....+.....-..+.|...+|++ |+.++++-+.||.+||+|..+.+++
T Consensus 256 t~--p~~~~~k~~~~f~i~-------t~ksk~~rNPv~~w~~~~g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLl 325 (636)
T KOG2394|consen 256 TA--PSYQALKDGDQFAIL-------TSKSKKTRNPVARWHIGEGSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELL 325 (636)
T ss_pred CC--CcccccCCCCeeEEe-------eeeccccCCccceeEeccccccceeEcC-CCceEEEEecCceEEEeeccHHHHH
Confidence 00 111122344444321 1111111112222222345788899987 8888999999999999999888776
Q ss_pred EeecC-CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccC
Q 018784 182 QTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG 260 (350)
Q Consensus 182 ~~~~~-~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~ 260 (350)
..++. -....+++|+|||+|++ +|++|.-|.||.+..+
T Consensus 326 g~mkSYFGGLLCvcWSPDGKyIv-----------------------------------------tGGEDDLVtVwSf~er 364 (636)
T KOG2394|consen 326 GVMKSYFGGLLCVCWSPDGKYIV-----------------------------------------TGGEDDLVTVWSFEER 364 (636)
T ss_pred HHHHhhccceEEEEEcCCccEEE-----------------------------------------ecCCcceEEEEEeccc
Confidence 66654 35678888998876654 4455555555555555
Q ss_pred eeEEeecCCCcCEEEEEEc
Q 018784 261 EQIGCNKGHHGPVHCVRFS 279 (350)
Q Consensus 261 ~~~~~~~~h~~~v~~l~~s 279 (350)
+.+..-++|..||..++|-
T Consensus 365 RVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 365 RVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred eEEEeccccccceeeEeec
Confidence 6666666666666666664
No 246
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.32 E-value=5e-09 Score=96.11 Aligned_cols=263 Identities=13% Similarity=0.051 Sum_probs=162.4
Q ss_pred ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEE
Q 018784 31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAF 110 (350)
Q Consensus 31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~ 110 (350)
+..+..++.++.+.-+|..+|+.+..+.-.......... ++..++.++.|+.+..+|..+++.+........+.+...
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 456778888999999999999887655433221112222 355666778899999999999998876654443332111
Q ss_pred cCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCC----cEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC
Q 018784 111 SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG----SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186 (350)
Q Consensus 111 ~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~ 186 (350)
. .+..++.+..++.+..||..+++........... ...+.... ++ .++.+..++.+..+|+++|+.+.....
T Consensus 143 v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 143 V-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred E-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeecc
Confidence 1 2456777788999999999876544332111100 00011111 23 455667789999999999987765432
Q ss_pred CCC-----------eEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEE
Q 018784 187 KSP-----------VTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVF 255 (350)
Q Consensus 187 ~~~-----------v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~ 255 (350)
..+ +...-...++.+++++.++.+..||..+++.+........ ..... .+..+..++.|+.++.+
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~~-~~p~~---~~~~vyv~~~~G~l~~~ 294 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASSY-QGPAV---DDNRLYVTDADGVVVAL 294 (377)
T ss_pred ccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCCc-cCceE---eCCEEEEECCCCeEEEE
Confidence 110 0000111245666677788999999988877655542211 11111 25667777889999999
Q ss_pred EcccCeeEEeecCCCc-CEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784 256 DFHTGEQIGCNKGHHG-PVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305 (350)
Q Consensus 256 d~~~~~~~~~~~~h~~-~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~ 305 (350)
|..+|+.+-....... ...+... .+..++.++.||.|+++|..+.+..
T Consensus 295 d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 295 DRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred ECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 9999987643321111 1122222 3568888999999999998766554
No 247
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.31 E-value=3.2e-11 Score=101.76 Aligned_cols=219 Identities=16% Similarity=0.216 Sum_probs=143.1
Q ss_pred EEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEE-eeCCCeEEEEECCCCCCCCeeecCC
Q 018784 66 SCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT-GGFEKILRIFDLNRPDAPPREVGNS 144 (350)
Q Consensus 66 ~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s-g~~d~~v~vwd~~~~~~~~~~~~~~ 144 (350)
-++|+|+|+++|+.+.- .+.|=|.++-+....+.--..|.-+.|..+..++++ ...|+.|.+|++..++-..+. ...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI-deg 90 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI-DEG 90 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe-ccC
Confidence 36899999999998765 666667666554333322334666778777765554 567889999999876554333 344
Q ss_pred CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCC----cEEEEECCCcce
Q 018784 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGS----SVKFWDANHFGL 220 (350)
Q Consensus 145 ~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~----~i~vwd~~~~~~ 220 (350)
...+.++.|+|+++.++.+..-|-.|.+|.+.+.+....-.....+..++|+|+|++.+..+.. .+.+........
T Consensus 91 ~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~l 170 (447)
T KOG4497|consen 91 QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWIL 170 (447)
T ss_pred CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHH
Confidence 5668899999988899999999999999999988776555555667889999999998765432 122222222222
Q ss_pred eeeeecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCC-cCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784 221 VKGYNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHH-GPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 221 ~~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~-~~v~~l~~sp~~~~lasgs~Dg~v~vw~ 298 (350)
.+.+..+.. ...+.+.| +| ..+.+||---. ...+-.|. -.+..++|+|.+++|+.|+.|+.+|+-+
T Consensus 171 l~~f~~dT~DltgieWsP-dg---------~~laVwd~~Le--ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 171 LKEFKLDTIDLTGIEWSP-DG---------NWLAVWDNVLE--YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN 238 (447)
T ss_pred HHhcCCCcccccCceECC-CC---------cEEEEecchhh--heeeeeeeccceeEEEeccccceEEeeccchhhhhhc
Confidence 233322211 12233444 23 34556663111 11112232 3478899999999999999999999865
No 248
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.30 E-value=5.5e-09 Score=95.82 Aligned_cols=256 Identities=16% Similarity=0.136 Sum_probs=156.8
Q ss_pred ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEE-
Q 018784 31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACA- 109 (350)
Q Consensus 31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~- 109 (350)
+..++.++.|+.+..+|..+|+.+....-. +.+.+...-.++ .++.++.||.+..||..+++.+...........+.
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~ 182 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLVANG-LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRG 182 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEEECC-EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecC
Confidence 556777888999999999999887655422 222211111233 44556789999999999998877664332211110
Q ss_pred -EcC--CCCeEEEeeCCCeEEEEECCCCCCCCeeecC-CCC--c------E-EEEEEeCCCCcEEEEEeCCCeEEEEECC
Q 018784 110 -FSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SSG--S------I-RTVAWLHSDQTILSSCTDSGGVRLWDAR 176 (350)
Q Consensus 110 -~~~--~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~-~~~--~------v-~~~~~~~~~~~~~~s~~~dg~i~iwd~~ 176 (350)
-+| .+..++.+..++.+..+|+.++......... ..+ . + .+... .++ .+..++.+|.+..||.+
T Consensus 183 ~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~-~vy~~~~~g~l~a~d~~ 259 (377)
T TIGR03300 183 SASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGG-QVYAVSYQGRVAALDLR 259 (377)
T ss_pred CCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECC-EEEEEEcCCEEEEEECC
Confidence 011 1246777888899999998766543221110 000 0 0 01111 133 34445678999999999
Q ss_pred CCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeee-cCCCCceeEecCCCCcEEEEecCCCeEEEE
Q 018784 177 SGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYN-MPCNTESASLEPKLGNIFIAGGEDMWVHVF 255 (350)
Q Consensus 177 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~ 255 (350)
+|+.+........ ....+ .++++++...++.+..+|..+++.+..+. .......... ..+..+++++.++.|+++
T Consensus 260 tG~~~W~~~~~~~-~~p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~--i~g~~l~~~~~~G~l~~~ 335 (377)
T TIGR03300 260 SGRVLWKRDASSY-QGPAV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA--VVGGYLVVGDFEGYLHWL 335 (377)
T ss_pred CCcEEEeeccCCc-cCceE-eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCE--EECCEEEEEeCCCEEEEE
Confidence 9988776653221 11222 24556666778899999998887665442 2111111111 135688889999999999
Q ss_pred EcccCeeEEeecCCCcCEE-EEEEcCCCCEEEEecCCCcEEEe
Q 018784 256 DFHTGEQIGCNKGHHGPVH-CVRFSPGGESYASGSEDGTIRIW 297 (350)
Q Consensus 256 d~~~~~~~~~~~~h~~~v~-~l~~sp~~~~lasgs~Dg~v~vw 297 (350)
|..+|+.+..+..+...+. +..+. ++ .|+.++.||.|+.+
T Consensus 336 d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 336 SREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAF 376 (377)
T ss_pred ECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEe
Confidence 9999999887776654432 22333 33 47788999999876
No 249
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.29 E-value=1.9e-10 Score=110.13 Aligned_cols=183 Identities=13% Similarity=0.191 Sum_probs=140.4
Q ss_pred ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCe----EEEEECCCCcEEEEeeCCCeEEEeeCCCC-CeeeeeeccccE
Q 018784 31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAV----WSCCLDANALFSASGSADFTAKLWDALTG-DEKHSFEHKHIV 105 (350)
Q Consensus 31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V----~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~-~~~~~~~h~~~V 105 (350)
.+.++.++.++.+.|||...+..+..+.+-.-.. ..+-++++..++++|+.-+.|.+|+.... .+.....|.+.+
T Consensus 99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~i 178 (967)
T KOG0974|consen 99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSI 178 (967)
T ss_pred cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCce
Confidence 4577888999999999987776665554322211 12234778889999999999999998633 344456899999
Q ss_pred eEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec
Q 018784 106 RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE 185 (350)
Q Consensus 106 ~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~ 185 (350)
..+.++.+|.++++.|.|+++|+|++++.+......-.|.+.++.+.+.+. .++++++|-++++|+.. ++.+..+.
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~-~~~l~~y~ 254 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVN-GTQLEVYD 254 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEecc-cceehhhh
Confidence 999999999999999999999999999877665455678999999998865 78899999999999654 44444444
Q ss_pred CC--CCeEEEEEecCCcEEE-EEcCCcEEEEECCC
Q 018784 186 TK--SPVTSAEVSRDGRYIT-TADGSSVKFWDANH 217 (350)
Q Consensus 186 ~~--~~v~~~~~~~~~~~l~-~~~~~~i~vwd~~~ 217 (350)
.+ ..+..+...++.-+++ .+.|+.+++||...
T Consensus 255 ~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 255 EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 33 4577888887766654 45789999999754
No 250
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=3.8e-09 Score=98.60 Aligned_cols=210 Identities=14% Similarity=0.132 Sum_probs=129.6
Q ss_pred eEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCC---CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcE
Q 018784 84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160 (350)
Q Consensus 84 ~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d---~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 160 (350)
.|.++|...........+...+....|+|+|+.|+..+.+ ..|.+||+.++.. .......+......|+|++..+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~l 257 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSKL 257 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCEE
Confidence 4777787765555555677788999999999988766543 3688899876532 2222233445568898877777
Q ss_pred EEEEeCCC--eEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE-Ec-CC--cEEEEECCCcceeeeeecCC-CCcee
Q 018784 161 LSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD-GS--SVKFWDANHFGLVKGYNMPC-NTESA 233 (350)
Q Consensus 161 ~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~-~~--~i~vwd~~~~~~~~~~~~~~-~~~~~ 233 (350)
+++...++ .|.+||+.+++...............|+|||+.++. ++ ++ .|.++|+.+....+ +.... .....
T Consensus 258 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~ 336 (430)
T PRK00178 258 AFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARP 336 (430)
T ss_pred EEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccce
Confidence 76665555 588889988765432223334556789999987654 32 22 57778877655332 22221 12233
Q ss_pred EecCCCCcEEEEecC-CC--eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecC-CC--cEEEecC
Q 018784 234 SLEPKLGNIFIAGGE-DM--WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSE-DG--TIRIWQT 299 (350)
Q Consensus 234 ~~~~~~~~~l~sg~~-d~--~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~-Dg--~v~vw~~ 299 (350)
.+.+ +++.++..+. ++ .|.++|+.+++... +. +........|+|+|++++..+. ++ .|++++.
T Consensus 337 ~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 337 RLSA-DGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred EECC-CCCEEEEEEccCCceEEEEEECCCCCEEE-cc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 4555 4555554443 33 58889998876432 22 1122235689999998875554 33 3555555
No 251
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=8.8e-11 Score=117.84 Aligned_cols=194 Identities=12% Similarity=0.186 Sum_probs=148.0
Q ss_pred ccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee--ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCC
Q 018784 57 FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP 134 (350)
Q Consensus 57 l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~--h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~ 134 (350)
+..|-..|.++.-+|...+-+||+.||.|++|.-..++.+..+. .+..|+.+.|+.+|+.+..+..||.+.+|.+.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-- 2281 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-- 2281 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC--
Confidence 44566778888888988999999999999999988887766653 34779999999999999999999999999986
Q ss_pred CCCCeeecCCCCcEEEEEEeCCCCcEEEEE---eCCCeEEEEECCC--C-ceeEeecCCCCeEEEEEecCCcEEEEE-cC
Q 018784 135 DAPPREVGNSSGSIRTVAWLHSDQTILSSC---TDSGGVRLWDARS--G-KIVQTLETKSPVTSAEVSRDGRYITTA-DG 207 (350)
Q Consensus 135 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~---~~dg~i~iwd~~~--~-~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~ 207 (350)
..+....+.|......+.|.. .+++++ ++++.+.+||.-- . .++. .-+...++.+++.|+.+++.++ .+
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCc
Confidence 223333456666677777764 334443 3568899999632 2 2333 3456789999999998877654 68
Q ss_pred CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEee
Q 018784 208 SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCN 266 (350)
Q Consensus 208 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~ 266 (350)
|.|.+||++..+++..+.. +. ...+|++|+..|.|+||++..-..+.++
T Consensus 2358 G~v~l~D~rqrql~h~~~~--------~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQA--------LD--TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred CcEEEeehHHHHHHHHhhh--------hh--hhheeeccCcccceEEEEccccchhhcC
Confidence 9999999998877665543 11 3689999999999999999887666554
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.27 E-value=7.9e-08 Score=86.91 Aligned_cols=255 Identities=16% Similarity=0.199 Sum_probs=155.7
Q ss_pred eEEEecccCCCccEEEEEeC----CCCeeEeeCCC--Cce--eeeccCccCCeEEEEECCCCcEEEEee-CCCeEEEeeC
Q 018784 20 VDLFYSPITPDGFFLVSASK----DSSPMLRNGET--GDW--IGTFEGHKGAVWSCCLDANALFSASGS-ADFTAKLWDA 90 (350)
Q Consensus 20 ~~~~~~~~s~dg~~lasgs~----d~~v~iw~~~~--~~~--~~~l~gH~~~V~~v~~~~~~~~l~s~s-~Dg~v~vWd~ 90 (350)
.-++++| ++++|.+... ++.|..|.... +++ +.....-...-..+++++++.+++++. .+|+|.++++
T Consensus 40 s~l~~~~---~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 40 SWLAVSP---DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp CCEEE-T---TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ceEEEEe---CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 3455554 8888887776 45677776544 333 223321223334688999999888876 5899999998
Q ss_pred CCC-Ceee---eeec-----------cccEeEEEEcCCCCeEEEee-CCCeEEEEECCCCCCCCe----eecCCCCcEEE
Q 018784 91 LTG-DEKH---SFEH-----------KHIVRACAFSEDTHLLLTGG-FEKILRIFDLNRPDAPPR----EVGNSSGSIRT 150 (350)
Q Consensus 91 ~~~-~~~~---~~~h-----------~~~V~~~~~~~~~~~l~sg~-~d~~v~vwd~~~~~~~~~----~~~~~~~~v~~ 150 (350)
... .... .+.| .....++.|+|+++++++.. ....|.+|++........ .........+.
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 763 2211 2221 23467899999999887753 345799999876542221 12234556788
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEECC--CCc--eeEeecC-------CCCeEEEEEecCCcEEEEEc--CCcEEEEECCC
Q 018784 151 VAWLHSDQTILSSCTDSGGVRLWDAR--SGK--IVQTLET-------KSPVTSAEVSRDGRYITTAD--GSSVKFWDANH 217 (350)
Q Consensus 151 ~~~~~~~~~~~~s~~~dg~i~iwd~~--~~~--~~~~~~~-------~~~v~~~~~~~~~~~l~~~~--~~~i~vwd~~~ 217 (350)
++|.+++..+++.+..+++|.++++. +++ .+..+.. ......+.++|||++|.+++ .+.|.+|++..
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 99988777788888888999999987 442 2222221 12577899999999987765 45799999832
Q ss_pred --c--ceeeeeecCC-CCceeEecCCCCcEEE-EecCCCeEEEEEcc--cCeeEEeec-CCCcCEEEEEE
Q 018784 218 --F--GLVKGYNMPC-NTESASLEPKLGNIFI-AGGEDMWVHVFDFH--TGEQIGCNK-GHHGPVHCVRF 278 (350)
Q Consensus 218 --~--~~~~~~~~~~-~~~~~~~~~~~~~~l~-sg~~d~~i~v~d~~--~~~~~~~~~-~h~~~v~~l~~ 278 (350)
+ ..+..+.... .+..+.+.+. +++|+ ++..++.|.+|+++ +|.+...-. .......||.|
T Consensus 277 ~~g~l~~~~~~~~~G~~Pr~~~~s~~-g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 277 ATGTLTLVQTVPTGGKFPRHFAFSPD-GRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TTTTEEEEEEEEESSSSEEEEEE-TT-SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred CCCceEEEEEEeCCCCCccEEEEeCC-CCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 2 2333333322 3455666664 55555 44567789999774 666543332 22334566655
No 253
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.25 E-value=9.2e-10 Score=99.71 Aligned_cols=187 Identities=18% Similarity=0.269 Sum_probs=134.4
Q ss_pred CCCcEEEEeeCCCeEEEeeCCCCCeeeeee---c-cccEeEEEE------cC--------------CCCeEEEeeCCCeE
Q 018784 71 ANALFSASGSADFTAKLWDALTGDEKHSFE---H-KHIVRACAF------SE--------------DTHLLLTGGFEKIL 126 (350)
Q Consensus 71 ~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~---h-~~~V~~~~~------~~--------------~~~~l~sg~~d~~v 126 (350)
+...++|....||.+|+||...++....+. + .+...+..| +| +-..++-|-..|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 456789999999999999998877655442 1 222222222 22 23456667888999
Q ss_pred EEEECCCCCCCCeee-cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEE
Q 018784 127 RIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITT 204 (350)
Q Consensus 127 ~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~ 204 (350)
.+|++..++...+.. ..|.+.|.++.+. ++-.++.|++.|..+..|+...++.++..+.. ..+.+++++||++++.+
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~-~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDA-QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecc-cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence 999998877666555 6788888888764 55678899999999999999988877776653 34667777777665544
Q ss_pred EcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCC---
Q 018784 205 ADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPG--- 281 (350)
Q Consensus 205 ~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~--- 281 (350)
+ + +.|++||+.+.+.+.++.||.++|.+++|..+
T Consensus 162 a-----------------------------------------s--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g 198 (541)
T KOG4547|consen 162 A-----------------------------------------S--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDG 198 (541)
T ss_pred c-----------------------------------------c--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccc
Confidence 3 2 34777777888888888999999999999876
Q ss_pred --CCEE-EEecCCCcEEEecCCC
Q 018784 282 --GESY-ASGSEDGTIRIWQTNP 301 (350)
Q Consensus 282 --~~~l-asgs~Dg~v~vw~~~~ 301 (350)
|.++ .+...+..+.+|-+..
T Consensus 199 ~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 199 IIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred cccceeeeccccccceeEEEEEc
Confidence 5554 4555666788886643
No 254
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.25 E-value=1.6e-10 Score=100.03 Aligned_cols=158 Identities=16% Similarity=0.190 Sum_probs=118.6
Q ss_pred cCCCccEEEEEeCCCCeeEeeCC--C--CceeeeccC--ccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee
Q 018784 27 ITPDGFFLVSASKDSSPMLRNGE--T--GDWIGTFEG--HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE 100 (350)
Q Consensus 27 ~s~dg~~lasgs~d~~v~iw~~~--~--~~~~~~l~g--H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~ 100 (350)
.++++++||.+..+....+.+.. . -+++..+.. -...+..+..+......-.++....+.+|....+.+...+.
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lG 149 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILG 149 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchhhh
Confidence 34578999998888775554432 2 233333322 23345555555555666677888999999988788888899
Q ss_pred ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCce
Q 018784 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKI 180 (350)
Q Consensus 101 h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~ 180 (350)
|-..+..++++||+++++++..|..||+-.............+|..-|..++.. ++..++|++.|++|++||+++|++
T Consensus 150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--~~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--DNYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--cCceeeecCCCCcEEEEecccCCc
Confidence 999999999999999999999999999988765555555667788888888865 344588999999999999999998
Q ss_pred eEeecC
Q 018784 181 VQTLET 186 (350)
Q Consensus 181 ~~~~~~ 186 (350)
+.++..
T Consensus 228 L~t~dl 233 (390)
T KOG3914|consen 228 LDTCDL 233 (390)
T ss_pred ccccch
Confidence 876654
No 255
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=6e-11 Score=106.55 Aligned_cols=276 Identities=19% Similarity=0.227 Sum_probs=173.8
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-------CceeeeccCccCCeEEEEECCCCcEEEEeeCCCe
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-------GDWIGTFEGHKGAVWSCCLDANALFSASGSADFT 84 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~-------~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~ 84 (350)
+.||...|..++.-. +..-++++|.|+++++|.+.. ..+..++..|+.+|..+.|-.+-++++++ ||.
T Consensus 731 f~GH~~~iRai~Aid---NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAID---NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred ccCcHHHhHHHHhcc---cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 369999999886433 334578999999999999642 34677899999999999998888888765 999
Q ss_pred EEEeeCCCCCeeeeee---ccccEeEEEEcC--CCCeEEEe-eCCCeEEEEECCCCCCCCeee----cCCCCcEEEEEEe
Q 018784 85 AKLWDALTGDEKHSFE---HKHIVRACAFSE--DTHLLLTG-GFEKILRIFDLNRPDAPPREV----GNSSGSIRTVAWL 154 (350)
Q Consensus 85 v~vWd~~~~~~~~~~~---h~~~V~~~~~~~--~~~~l~sg-~~d~~v~vwd~~~~~~~~~~~----~~~~~~v~~~~~~ 154 (350)
|.+||...+..+.... ..+.+.-+..-+ +..++..| +...+|+++|....+...... ....+-+++++..
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa 885 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA 885 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence 9999988776554331 112222232222 44555554 788999999987655443322 2234567778776
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEE-EEcCCcEEE-EECCCcceeeeeecCCCCc
Q 018784 155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYIT-TADGSSVKF-WDANHFGLVKGYNMPCNTE 231 (350)
Q Consensus 155 ~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~-~~~~~~i~v-wd~~~~~~~~~~~~~~~~~ 231 (350)
+.++. ++.+-..|.|.+.|.|+|+.+..+.. ......++ .|..+.++ +..+..+-+ |..-.+..... ....+.
T Consensus 886 ~~GN~-lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q--~kpppe 961 (1034)
T KOG4190|consen 886 DKGNK-LAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQ--DKPPPE 961 (1034)
T ss_pred cCcch-hhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeec--cCCCCc
Confidence 65554 45556679999999999998765543 11111111 23334443 344666776 76544332211 111122
Q ss_pred eeEecCCCCcEEEEecCCCeEEEEEcc-cCe---eEEee--cCCCcCEEEEEEcCCCCEEEEecCCCcEEE
Q 018784 232 SASLEPKLGNIFIAGGEDMWVHVFDFH-TGE---QIGCN--KGHHGPVHCVRFSPGGESYASGSEDGTIRI 296 (350)
Q Consensus 232 ~~~~~~~~~~~l~sg~~d~~i~v~d~~-~~~---~~~~~--~~h~~~v~~l~~sp~~~~lasgs~Dg~v~v 296 (350)
..-|-...|.-+++......+.+|--. ... .+..+ ....+..++++--|-+.-+..|.+.|.|.+
T Consensus 962 pahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 962 PAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred chhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 222222345667888888888888421 111 11112 234566788888888888888998888875
No 256
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.24 E-value=1.8e-09 Score=90.03 Aligned_cols=183 Identities=14% Similarity=0.127 Sum_probs=129.0
Q ss_pred CCceeEEEecccCCCcc-EEEEEeCCCCeeEeeCCCCceeeeccCccC---C---eEEEEECCCCcEEEEeeCCCeEEEe
Q 018784 16 SRPVVDLFYSPITPDGF-FLVSASKDSSPMLRNGETGDWIGTFEGHKG---A---VWSCCLDANALFSASGSADFTAKLW 88 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~-~lasgs~d~~v~iw~~~~~~~~~~l~gH~~---~---V~~v~~~~~~~~l~s~s~Dg~v~vW 88 (350)
+..+..+.++-...+|. .|+-+-.+|.+.++...-.+....|++-+. . ..++.|++.+.-++++-.+|.+-+-
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v 148 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV 148 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence 34556666665556776 667788889999887554444444444221 1 2456678888889999999998854
Q ss_pred eCCCCCeee--ee-eccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCC-CCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784 89 DALTGDEKH--SF-EHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDA-PPREVGNSSGSIRTVAWLHSDQTILSS 163 (350)
Q Consensus 89 d~~~~~~~~--~~-~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~s 163 (350)
+........ .+ .|.-....+.|+. +.+++++||.|+.+.-||++-+.. ......-|...|.++..+++.+..+++
T Consensus 149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence 433322222 22 4777778888875 457889999999999999984332 222234566778899888999999999
Q ss_pred EeCCCeEEEEECC-CCceeEeecCCCCeEEEEEecC
Q 018784 164 CTDSGGVRLWDAR-SGKIVQTLETKSPVTSAEVSRD 198 (350)
Q Consensus 164 ~~~dg~i~iwd~~-~~~~~~~~~~~~~v~~~~~~~~ 198 (350)
|+.|-.|++||.| .++++..-...+.|..+..+|.
T Consensus 229 GsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 229 GSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPE 264 (339)
T ss_pred eccccceeeeehhcccCccccCccccceEEEEecch
Confidence 9999999999999 4677776666677877777774
No 257
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=7.7e-09 Score=96.64 Aligned_cols=210 Identities=13% Similarity=0.102 Sum_probs=126.9
Q ss_pred eEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCC---CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcE
Q 018784 84 TAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFE---KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTI 160 (350)
Q Consensus 84 ~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d---~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 160 (350)
.+.++|...........+...+.+..|+|+|+.|+..+.+ ..|.+||+.+++. .......+......|+|++..+
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~L 276 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKKL 276 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCEE
Confidence 5667787655555555677788899999999988766542 2588888875432 2222223334567898877777
Q ss_pred EEEEeCCCe--EEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc--CC--cEEEEECCCcceeeeeecCC-CCcee
Q 018784 161 LSSCTDSGG--VRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD--GS--SVKFWDANHFGLVKGYNMPC-NTESA 233 (350)
Q Consensus 161 ~~s~~~dg~--i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~--~i~vwd~~~~~~~~~~~~~~-~~~~~ 233 (350)
+++...++. |.++|+.+++...............|+|||+.++... ++ .|.++|+.+....+ +.... .....
T Consensus 277 a~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~ 355 (448)
T PRK04792 277 ALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGG 355 (448)
T ss_pred EEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCe
Confidence 777666664 8888988776543333334456788999998775432 23 57777877655332 22221 12234
Q ss_pred EecCCCCcEEEEec-CCC--eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEec-CCCc--EEEecC
Q 018784 234 SLEPKLGNIFIAGG-EDM--WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS-EDGT--IRIWQT 299 (350)
Q Consensus 234 ~~~~~~~~~l~sg~-~d~--~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs-~Dg~--v~vw~~ 299 (350)
.+.++ +++++..+ .++ .|.++|+.+++... +... .......|+|+|++|+..+ .++. +++++.
T Consensus 356 ~~SpD-G~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 356 SITPD-GRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred eECCC-CCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 55554 55555443 344 45667877776432 2221 1223457999999876544 4444 555555
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=2.6e-08 Score=92.45 Aligned_cols=237 Identities=12% Similarity=0.016 Sum_probs=135.9
Q ss_pred CeeEeeCCCCceeeeccCccCCeEEEEECCCCcE---EEEeeCCCe--EEEeeCCCCCeeeeeeccccEeEEEEcCCCCe
Q 018784 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF---SASGSADFT--AKLWDALTGDEKHSFEHKHIVRACAFSEDTHL 116 (350)
Q Consensus 42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~---l~s~s~Dg~--v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~ 116 (350)
.+.+.|...+.. +.|......+..-+|+|||+. +++.-.+|. |.+.++.+++.......++.....+|+|||+.
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~ 244 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKL 244 (428)
T ss_pred eEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCE
Confidence 455555544433 345445555667789999863 334444544 55557777765554445555667899999988
Q ss_pred EEEeeC-----CCeEEEEECCCC--CCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEE--ECCC-CceeEeecC
Q 018784 117 LLTGGF-----EKILRIFDLNRP--DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW--DARS-GKIVQTLET 186 (350)
Q Consensus 117 l~sg~~-----d~~v~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iw--d~~~-~~~~~~~~~ 186 (350)
|+..+. +-.+..|++..+ ...........+......|+|++..++.+...+|...+| ++.. +.....+..
T Consensus 245 Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~ 324 (428)
T PRK01029 245 LAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK 324 (428)
T ss_pred EEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc
Confidence 875442 333455776542 122222222223445678988777777766566655555 4432 222333332
Q ss_pred -CCCeEEEEEecCCcEEEEE-c-C--CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEE-EecC--CCeEEEEEcc
Q 018784 187 -KSPVTSAEVSRDGRYITTA-D-G--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFI-AGGE--DMWVHVFDFH 258 (350)
Q Consensus 187 -~~~v~~~~~~~~~~~l~~~-~-~--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sg~~--d~~i~v~d~~ 258 (350)
...+....|+|||+.|+.. . + ..|.+||+.++....-...........+.+ +++.|+ +... ...|+++|+.
T Consensus 325 ~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~vdl~ 403 (428)
T PRK01029 325 KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAI-DSLHLVYSAGNSNESELYLISLI 403 (428)
T ss_pred CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECC-CCCEEEEEECCCCCceEEEEECC
Confidence 3455678899999977643 2 2 369999998776543222222234455655 455554 4333 3468888987
Q ss_pred cCeeEEeecCCCcCEEEEEEcCC
Q 018784 259 TGEQIGCNKGHHGPVHCVRFSPG 281 (350)
Q Consensus 259 ~~~~~~~~~~h~~~v~~l~~sp~ 281 (350)
+++..... ...+.+...+|+|-
T Consensus 404 ~g~~~~Lt-~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 404 TKKTRKIV-IGSGEKRFPSWGAF 425 (428)
T ss_pred CCCEEEee-cCCCcccCceecCC
Confidence 76654332 23344566777764
No 259
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.19 E-value=4.4e-08 Score=99.99 Aligned_cols=236 Identities=13% Similarity=0.088 Sum_probs=154.0
Q ss_pred EEEECC-CCcEEEEeeCCCeEEEeeCCCCCeeeeeec---------------cccEeEEEEcCCCCeEEEee-CCCeEEE
Q 018784 66 SCCLDA-NALFSASGSADFTAKLWDALTGDEKHSFEH---------------KHIVRACAFSEDTHLLLTGG-FEKILRI 128 (350)
Q Consensus 66 ~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h---------------~~~V~~~~~~~~~~~l~sg~-~d~~v~v 128 (350)
.+++++ ++.++++-...+.|++||.. +.....+.. -.....+++.++++.|+.+. .++.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 467775 46777888888999999975 333332221 12357899999887665554 4678999
Q ss_pred EECCCCCCCCeeec----------------CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec-------
Q 018784 129 FDLNRPDAPPREVG----------------NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE------- 185 (350)
Q Consensus 129 wd~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~------- 185 (350)
+|+.+.... ...+ ..-.....+++.+.++.++++...++.|++||..++.......
T Consensus 651 id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~ 729 (1057)
T PLN02919 651 IDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNL 729 (1057)
T ss_pred EecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccC
Confidence 997643211 0000 0012345788887678888888888999999998775432110
Q ss_pred -C-------CCCeEEEEEecCCcEEE-EE-cCCcEEEEECCCcceeeee-----------ec-----------CCCCcee
Q 018784 186 -T-------KSPVTSAEVSRDGRYIT-TA-DGSSVKFWDANHFGLVKGY-----------NM-----------PCNTESA 233 (350)
Q Consensus 186 -~-------~~~v~~~~~~~~~~~l~-~~-~~~~i~vwd~~~~~~~~~~-----------~~-----------~~~~~~~ 233 (350)
. -.....++++|++..|. +. .++.|++||+.+....... .. -..+..+
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gv 809 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGV 809 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCcee
Confidence 0 01345688999987443 33 4578999998765421100 00 0012333
Q ss_pred EecCCCCcEEEEecCCCeEEEEEcccCeeEEeec-------------CCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 234 SLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK-------------GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 234 ~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~-------------~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
.+.+ +++++++-+.+++|++||..++....... +.-.....|+++++|+++++-+.+++|++||+.
T Consensus 810 avd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 810 LCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred eEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 4443 47899999999999999998776543221 112356789999999999999999999999997
Q ss_pred CCCc
Q 018784 301 PPNH 304 (350)
Q Consensus 301 ~~~~ 304 (350)
....
T Consensus 889 ~~~~ 892 (1057)
T PLN02919 889 KGEA 892 (1057)
T ss_pred CCcc
Confidence 6654
No 260
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.16 E-value=2.6e-10 Score=114.62 Aligned_cols=196 Identities=19% Similarity=0.280 Sum_probs=141.3
Q ss_pred CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeecc-CccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe
Q 018784 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFE-GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE 95 (350)
Q Consensus 17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~ 95 (350)
..|.++.-+|.-| +-+||+.||.+++|.-..++.+..++ +-...|..+.|+.+|..+..+..||.+-+|.+. .++
T Consensus 2209 ~~v~r~~sHp~~~---~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDP---YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKP 2284 (2439)
T ss_pred CceeeecCCCCCc---eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Ccc
Confidence 3455555455333 77999999999999876666665553 223778889999999999999999999999987 223
Q ss_pred eee-eeccccEeEEEEcCCCCeEEEee---CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784 96 KHS-FEHKHIVRACAFSEDTHLLLTGG---FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (350)
Q Consensus 96 ~~~-~~h~~~V~~~~~~~~~~~l~sg~---~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~ 171 (350)
... ..|+.......|-. ..+++++ .++.+.+||...+....-....|.+.++++++.| ...++++|+.+|.|+
T Consensus 2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr~G~v~ 2361 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGRKGEVC 2361 (2439)
T ss_pred eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCCcCcEE
Confidence 333 24776666666654 4566654 4788999997544333323367888899999886 456788999999999
Q ss_pred EEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecC
Q 018784 172 LWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP 227 (350)
Q Consensus 172 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~ 227 (350)
+||++..+..+.++. +.....++..+..|.++||++.....++.+...
T Consensus 2362 l~D~rqrql~h~~~~--------~~~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2362 LFDIRQRQLRHTFQA--------LDTREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred EeehHHHHHHHHhhh--------hhhhheeeccCcccceEEEEccccchhhcCchh
Confidence 999998887766654 333334455556899999999988887766543
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.15 E-value=2.8e-09 Score=90.68 Aligned_cols=249 Identities=16% Similarity=0.219 Sum_probs=160.8
Q ss_pred CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC-CCCCeeeeeec--cccEeEEEEcCCCCeEEEeeCCCeEE
Q 018784 51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA-LTGDEKHSFEH--KHIVRACAFSEDTHLLLTGGFEKILR 127 (350)
Q Consensus 51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~-~~~~~~~~~~h--~~~V~~~~~~~~~~~l~sg~~d~~v~ 127 (350)
..++..++||.+.|+....-|...-+.+.+.|.++|||-- ..++.-..+.| +..++++.+++....|+.|-..|++.
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEE
Confidence 3456778999999998887777777889999999999953 33433333333 56789999999999999999999999
Q ss_pred EEECCCC---CCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE
Q 018784 128 IFDLNRP---DAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT 204 (350)
Q Consensus 128 vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 204 (350)
-+.+... ....+....|.+.+..+.|..+. ..+++++.|..+.---.+++..+.........+.+.+.-. +...
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFV 170 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEe
Confidence 8876432 12233445677888888877544 4566777775544333344433322211111111111111 1111
Q ss_pred Ec-CCcEEEE--ECCCcceeeeeecCCCCc-eeEecCCCCcEEEEecCCCeEEEEEcccCe-eEEeecCCCcCEEEEEEc
Q 018784 205 AD-GSSVKFW--DANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGGEDMWVHVFDFHTGE-QIGCNKGHHGPVHCVRFS 279 (350)
Q Consensus 205 ~~-~~~i~vw--d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~-~~~~~~~h~~~v~~l~~s 279 (350)
++ .+.|..- +.....++.++..+.... +..+.+ ...+|.+|..|..+.+||+.-.+ ....+.+|...|..+..-
T Consensus 171 Gd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~ 249 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA 249 (404)
T ss_pred cccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence 21 2222221 122233444444333332 333444 46889999999999999997554 345678999999999998
Q ss_pred CCCCEEEEecCCCcEEEecCCCCC
Q 018784 280 PGGESYASGSEDGTIRIWQTNPPN 303 (350)
Q Consensus 280 p~~~~lasgs~Dg~v~vw~~~~~~ 303 (350)
+--+.+.|++.||.|.+|+.+...
T Consensus 250 ~~t~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 250 QHTRQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhheeeeeccCCCeEEEEecccee
Confidence 888899999999999999986443
No 262
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.15 E-value=7.2e-10 Score=102.78 Aligned_cols=278 Identities=17% Similarity=0.242 Sum_probs=169.1
Q ss_pred CCceeEEEecccCCCccEEEEEeCCCCeeEeeCC-CCceeeeccCccC--CeEEEEECCC---CcEEEEeeCCCeEEEee
Q 018784 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGE-TGDWIGTFEGHKG--AVWSCCLDAN---ALFSASGSADFTAKLWD 89 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~-~~~~~~~l~gH~~--~V~~v~~~~~---~~~l~s~s~Dg~v~vWd 89 (350)
.+++.++..+| .|+-+|.++.-|-..| |+. .+.+.+.|. |.. .|--+.|++. ...+++.+...+ .+|+
T Consensus 24 ~~~~~a~si~p---~grdi~lAsr~gl~i~-dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qka-iiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINP---SGRDIVLASRQGLYII-DLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKA-IIWN 97 (1081)
T ss_pred cCcccceeecc---ccchhhhhhhcCeEEE-eccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchh-hhhh
Confidence 34566665554 7888888988776443 443 333333332 222 2334456543 334555544444 5798
Q ss_pred CCCCC--ee--eeeeccccEeEEEEcCCC-CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE
Q 018784 90 ALTGD--EK--HSFEHKHIVRACAFSEDT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC 164 (350)
Q Consensus 90 ~~~~~--~~--~~~~h~~~V~~~~~~~~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~ 164 (350)
+.... .+ ....|...|..+.|+|+. ..+++++.|..+..||+.++..+......-......++|...++.++++.
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred hhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence 75332 22 233688899999999865 57889999999999999887655444333344556788887788777764
Q ss_pred eCCCeEEEEECCCC-ceeEeecCC-CCeEEEEEec--CCcEEEEEcCCcEEEEECCCcceeeeeecCCCC--c-------
Q 018784 165 TDSGGVRLWDARSG-KIVQTLETK-SPVTSAEVSR--DGRYITTADGSSVKFWDANHFGLVKGYNMPCNT--E------- 231 (350)
Q Consensus 165 ~~dg~i~iwd~~~~-~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~--~------- 231 (350)
..+.|++||.+.| .++..++.+ ..++.+.|.. .+.++.++.|++|++||-.+......+..+.+. .
T Consensus 178 -hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pf 256 (1081)
T KOG0309|consen 178 -HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPF 256 (1081)
T ss_pred -cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceecccccc
Confidence 4468999999876 466666654 4566666653 456778888999999997653322222221111 1
Q ss_pred --eeEecCCCC-cEEEEecCCCeEEEEEcccC-eeEEeecCCCcCEEEEEEcCCC----------CEEEEecCCCcEEEe
Q 018784 232 --SASLEPKLG-NIFIAGGEDMWVHVFDFHTG-EQIGCNKGHHGPVHCVRFSPGG----------ESYASGSEDGTIRIW 297 (350)
Q Consensus 232 --~~~~~~~~~-~~l~sg~~d~~i~v~d~~~~-~~~~~~~~h~~~v~~l~~sp~~----------~~lasgs~Dg~v~vw 297 (350)
.....|..| +++.---.++....|+..++ +.++++.||.+.|....|-..+ -.|+|-|.|..+++|
T Consensus 257 g~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 257 GEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred CceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 111111111 11111111222333444443 5688999999988766553221 248999999999999
Q ss_pred cCC
Q 018784 298 QTN 300 (350)
Q Consensus 298 ~~~ 300 (350)
.+.
T Consensus 337 pI~ 339 (1081)
T KOG0309|consen 337 PID 339 (1081)
T ss_pred ecc
Confidence 875
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.14 E-value=1.8e-07 Score=83.32 Aligned_cols=236 Identities=15% Similarity=0.110 Sum_probs=144.7
Q ss_pred CCCccEEEEEeC----------CCCeeEeeCCCCceeeeccCccC-------CeEEEEECCCCcEEEEee-C-CCeEEEe
Q 018784 28 TPDGFFLVSASK----------DSSPMLRNGETGDWIGTFEGHKG-------AVWSCCLDANALFSASGS-A-DFTAKLW 88 (350)
Q Consensus 28 s~dg~~lasgs~----------d~~v~iw~~~~~~~~~~l~gH~~-------~V~~v~~~~~~~~l~s~s-~-Dg~v~vW 88 (350)
+|||+.|..+.. +..|.+||..+.+.+..+.--.. .-...++++||++++... . +..|-+.
T Consensus 54 spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~Vv 133 (352)
T TIGR02658 54 ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVV 133 (352)
T ss_pred CCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEE
Confidence 459887766665 78899999999999988763211 123678999999877554 3 7999999
Q ss_pred eCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe---eecCC-CCcE-EEEEEeCCCCcEEEE
Q 018784 89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR---EVGNS-SGSI-RTVAWLHSDQTILSS 163 (350)
Q Consensus 89 d~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~---~~~~~-~~~v-~~~~~~~~~~~~~~s 163 (350)
|+.+++.+..+.-.....-...+.+..+ +-+.|+......++....... ..... ...+ ..-.+.+.++..+..
T Consensus 134 D~~~~kvv~ei~vp~~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~v 211 (352)
T TIGR02658 134 DLEGKAFVRMMDVPDCYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWP 211 (352)
T ss_pred ECCCCcEEEEEeCCCCcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEE
Confidence 9999988777665443222222222222 223444444433322111000 00000 0000 000234434555544
Q ss_pred EeCCCeEEEEECCCC-----ceeEeecC--------CCCeEEEEEecCCcEEEE-Ec----------CCcEEEEECCCcc
Q 018784 164 CTDSGGVRLWDARSG-----KIVQTLET--------KSPVTSAEVSRDGRYITT-AD----------GSSVKFWDANHFG 219 (350)
Q Consensus 164 ~~~dg~i~iwd~~~~-----~~~~~~~~--------~~~v~~~~~~~~~~~l~~-~~----------~~~i~vwd~~~~~ 219 (350)
..+ |+|.+.|+... +.+..+.. ...+.-++++++++.+.. .. ++.|.++|..+.+
T Consensus 212 s~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k 290 (352)
T TIGR02658 212 TYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK 290 (352)
T ss_pred ecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence 444 99999996433 22222211 223445899999877654 31 2579999999999
Q ss_pred eeeeeecCCCCceeEecCCCC-cEEEEecCCCeEEEEEcccCeeEEee
Q 018784 220 LVKGYNMPCNTESASLEPKLG-NIFIAGGEDMWVHVFDFHTGEQIGCN 266 (350)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~-~~l~sg~~d~~i~v~d~~~~~~~~~~ 266 (350)
.+..+........+.+.++.. .++++...++.|.++|..+++.+..+
T Consensus 291 vi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 291 RLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 998888777777788887644 34445556888999999999988776
No 264
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=1.6e-08 Score=93.79 Aligned_cols=272 Identities=13% Similarity=0.089 Sum_probs=166.1
Q ss_pred ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCc---------------eeeeccCccCCeEEEEECCCCcEEEEeeCC
Q 018784 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGD---------------WIGTFEGHKGAVWSCCLDANALFSASGSAD 82 (350)
Q Consensus 18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~---------------~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D 82 (350)
...++.|+- ...++|.|+.||.+++..+.+.. .-.+|+||.++|..+.|....+.|.|...+
T Consensus 16 kL~c~~WNk---e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 16 KLHCAEWNK---ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred eEEEEEEcc---cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 466777764 67799999999999997754321 124789999999999999999999999999
Q ss_pred CeEEEeeCCCCCeee---eeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCc
Q 018784 83 FTAKLWDALTGDEKH---SFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT 159 (350)
Q Consensus 83 g~v~vWd~~~~~~~~---~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (350)
|.|.||-+..+.-.. .-..++.|.++.|+.+|+.++....||.|.+=.++....-.+.+.. .....+.|+++. .
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~-~ 169 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDL-E 169 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccH-H
Confidence 999999987765221 1235667999999999999999999988877666533222222211 112356677544 3
Q ss_pred EEEEEeCCCeEEEEECCCC-------ceeEeec-----CCCCeEEEEEe--------cCC-cEEEEEcCCcEEEEECCCc
Q 018784 160 ILSSCTDSGGVRLWDARSG-------KIVQTLE-----TKSPVTSAEVS--------RDG-RYITTADGSSVKFWDANHF 218 (350)
Q Consensus 160 ~~~s~~~dg~i~iwd~~~~-------~~~~~~~-----~~~~v~~~~~~--------~~~-~~l~~~~~~~i~vwd~~~~ 218 (350)
.++-+-..|.+.++|.... .+..... .+..+..+.|. |+- .+.++-.+|.+.+.--.+.
T Consensus 170 ~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 170 QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 4444556689999997532 1111111 11224445543 222 2334445555554422221
Q ss_pred ceeeeeecCCCCceeEecCCCCcEEEEecCCC---------eEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEec
Q 018784 219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDM---------WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS 289 (350)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~---------~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs 289 (350)
...-.+..+.......+++ +|..|++++.|. .|++|.. -|..+.+++....-|++++|-..|-.+|- .
T Consensus 250 ~~Pvv~dtgm~~vgakWnh-~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~~It~lsWEg~gLriA~-A 326 (1189)
T KOG2041|consen 250 PEPVVVDTGMKIVGAKWNH-NGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGSCITGLSWEGTGLRIAI-A 326 (1189)
T ss_pred CCCeEEecccEeecceecC-CCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCceeeeeEEcCCceEEEE-E
Confidence 1111112222233344544 478888887642 4555542 35667777777778999999766644443 2
Q ss_pred CCCcEEEec
Q 018784 290 EDGTIRIWQ 298 (350)
Q Consensus 290 ~Dg~v~vw~ 298 (350)
-|+.|++=+
T Consensus 327 vdsfiyfan 335 (1189)
T KOG2041|consen 327 VDSFIYFAN 335 (1189)
T ss_pred ecceEEEEe
Confidence 344554433
No 265
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.11 E-value=1.1e-08 Score=87.27 Aligned_cols=280 Identities=13% Similarity=0.198 Sum_probs=164.2
Q ss_pred CCceeEEEecccCCCccEEEEEeCCCCeeEeeC----CCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC
Q 018784 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNG----ETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL 91 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~----~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~ 91 (350)
..+++++.|.+ +.+.|..|=..+++.=+.+ ++-..++.+..|...|..+-|+.....+++.+.|..+.---.+
T Consensus 68 P~~~~~~~y~~---e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e 144 (404)
T KOG1409|consen 68 PSPCSAMEYVS---ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTE 144 (404)
T ss_pred CCCceEeeeec---cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeec
Confidence 44677887776 7788999988888876553 2344566778899999999999999999999999886533334
Q ss_pred CCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC-eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784 92 TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP-REVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (350)
Q Consensus 92 ~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i 170 (350)
.+..+..+.-.....++.|. -.+...|...+.|.+-.+......+ ....+|.+.+++.+|.+ .+.++.+|..|..+
T Consensus 145 ~~~~lg~Y~~~~~~t~~~~d--~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~v 221 (404)
T KOG1409|consen 145 SGNRLGGYNFETPASALQFD--ALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSV 221 (404)
T ss_pred cCCcccceEeeccCCCCcee--eEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCce
Confidence 44333222111111111111 1144556666666666554333332 34567889999999975 55678899999999
Q ss_pred EEEECCCCcee-Eeec-CCCCeEEEEEecCCc-EEEEEcCCcEEEEECCCcceeee----------eec-----------
Q 018784 171 RLWDARSGKIV-QTLE-TKSPVTSAEVSRDGR-YITTADGSSVKFWDANHFGLVKG----------YNM----------- 226 (350)
Q Consensus 171 ~iwd~~~~~~~-~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~i~vwd~~~~~~~~~----------~~~----------- 226 (350)
.+||+.-.+-. ..++ +...+..++..+-.+ +++++.|+.|.+||++..+.... .+.
T Consensus 222 i~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~ 301 (404)
T KOG1409|consen 222 IMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWD 301 (404)
T ss_pred EEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHh
Confidence 99998644322 2222 334455555544444 44566789999999864322110 000
Q ss_pred ---------CCCCc---eeEecCCCCcEEEEecCCCeEEEEEcc-----cC--eeEEeecCCCcCEEEEEEcCCCCEEEE
Q 018784 227 ---------PCNTE---SASLEPKLGNIFIAGGEDMWVHVFDFH-----TG--EQIGCNKGHHGPVHCVRFSPGGESYAS 287 (350)
Q Consensus 227 ---------~~~~~---~~~~~~~~~~~l~sg~~d~~i~v~d~~-----~~--~~~~~~~~h~~~v~~l~~sp~~~~las 287 (350)
++... .+............=+.+-.+|+.|.- +. ..+.....-...|++|.+...-.+|+|
T Consensus 302 ~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvT 381 (404)
T KOG1409|consen 302 RKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVT 381 (404)
T ss_pred hhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceee
Confidence 00000 000000001111111222334544421 11 123333222335899999888889999
Q ss_pred ecCCCcEEEecCCC
Q 018784 288 GSEDGTIRIWQTNP 301 (350)
Q Consensus 288 gs~Dg~v~vw~~~~ 301 (350)
++.|..|+|||+.+
T Consensus 382 sG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 382 SGTDRVIKIWDVRS 395 (404)
T ss_pred cCCceEEEEEechh
Confidence 99999999999864
No 266
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.10 E-value=1.4e-09 Score=92.56 Aligned_cols=199 Identities=20% Similarity=0.289 Sum_probs=132.2
Q ss_pred ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCC----CCeeecCC------------CCcEEEEEEeCCCC-cEEEE
Q 018784 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA----PPREVGNS------------SGSIRTVAWLHSDQ-TILSS 163 (350)
Q Consensus 101 h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~----~~~~~~~~------------~~~v~~~~~~~~~~-~~~~s 163 (350)
....+.++.|..+|.+|+||..+|.|-+|.-..... .....+.| ...|..+.|.++.+ ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 345688999999999999999999999997543222 11112222 23577788887654 34445
Q ss_pred EeCCCeEEEEECCCCceeE---------------ee-----c-----------------CCCCeEEEEEecCCcEEEEEc
Q 018784 164 CTDSGGVRLWDARSGKIVQ---------------TL-----E-----------------TKSPVTSAEVSRDGRYITTAD 206 (350)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~---------------~~-----~-----------------~~~~v~~~~~~~~~~~l~~~~ 206 (350)
.+.|.+|++|.++...... .+ . +.--++++.++.|...+.+++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 5688999999875421100 01 0 112378889999999999999
Q ss_pred CCcEEEEECCCcc-ee-----eeeecC---CCCceeEecCCCCcEEEEecCCCeEEEEEcccCee------EEe------
Q 018784 207 GSSVKFWDANHFG-LV-----KGYNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ------IGC------ 265 (350)
Q Consensus 207 ~~~i~vwd~~~~~-~~-----~~~~~~---~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~------~~~------ 265 (350)
|-.|.+|.+.-.. .. +...+. ....+.-|+|..-++|+..++-|+|++.|++..-+ +..
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~ 263 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPS 263 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCc
Confidence 9999999875321 11 111111 11234556776678999999999999999984221 111
Q ss_pred ----ecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 266 ----NKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 266 ----~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
+.+--..|..+.|+++|+++++-.. -+|++||+.
T Consensus 264 ~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 264 SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN 301 (433)
T ss_pred chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence 1122346889999999999987544 589999983
No 267
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.09 E-value=2.6e-07 Score=94.40 Aligned_cols=238 Identities=10% Similarity=0.118 Sum_probs=149.7
Q ss_pred eEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccC-c-------------cCCeEEEEECCCCcEE-EEeeCCCe
Q 018784 20 VDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-H-------------KGAVWSCCLDANALFS-ASGSADFT 84 (350)
Q Consensus 20 ~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~g-H-------------~~~V~~v~~~~~~~~l-~s~s~Dg~ 84 (350)
..+++++ .++.+.++-+..+.|+++|.. +..+..+.+ . -..-..+++++++..+ ++-...+.
T Consensus 571 ~gvavd~--~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDL--LNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred ceEEEEC--CCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 3566654 246677888888999999965 444444432 1 1123578888877644 44444578
Q ss_pred EEEeeCCCCCeeeeeec------------------cccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCee-----
Q 018784 85 AKLWDALTGDEKHSFEH------------------KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPRE----- 140 (350)
Q Consensus 85 v~vWd~~~~~~~~~~~h------------------~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~----- 140 (350)
|+++|..++... ++.. -+....++++| ++.++++.+.++.|++||...+......
T Consensus 648 Ir~id~~~~~V~-tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNETVR-TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCEEE-EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 999998665432 2210 12346789999 5666677778899999998653211000
Q ss_pred --e------cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec--------------C--------CCCe
Q 018784 141 --V------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE--------------T--------KSPV 190 (350)
Q Consensus 141 --~------~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~--------------~--------~~~v 190 (350)
. ...-.....+++.++++.++++-..++.|++||+.++....... . -...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 0 00112355688887777788888888999999998765321110 0 0123
Q ss_pred EEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecC--------------CCCceeEecCCCCcEEEEecCCCeEEEE
Q 018784 191 TSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP--------------CNTESASLEPKLGNIFIAGGEDMWVHVF 255 (350)
Q Consensus 191 ~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~sg~~d~~i~v~ 255 (350)
..++++++|.++++. .++.|++||..+.......... ..+..+.+.+ +++++++-+.++.|++|
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence 578889999876665 4678999998765443211100 0123344444 57899999999999999
Q ss_pred EcccCee
Q 018784 256 DFHTGEQ 262 (350)
Q Consensus 256 d~~~~~~ 262 (350)
|+.+++.
T Consensus 886 d~~~~~~ 892 (1057)
T PLN02919 886 DLNKGEA 892 (1057)
T ss_pred ECCCCcc
Confidence 9988764
No 268
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=1.6e-07 Score=87.28 Aligned_cols=193 Identities=15% Similarity=0.052 Sum_probs=114.0
Q ss_pred cCCCccE---EEEEeCCCC--eeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee-C----CCeEEEeeCCCC---
Q 018784 27 ITPDGFF---LVSASKDSS--PMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS-A----DFTAKLWDALTG--- 93 (350)
Q Consensus 27 ~s~dg~~---lasgs~d~~--v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s-~----Dg~v~vWd~~~~--- 93 (350)
++|||+. +.+.-.++. |.+.++.+++.. .+....+.....+|+|||+.++-.+ . |-.+..|++..+
T Consensus 192 wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g 270 (428)
T PRK01029 192 WMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG 270 (428)
T ss_pred EccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC
Confidence 5569864 234444444 566677766542 2222333344578999998766433 2 334555776542
Q ss_pred Ceeeeeec-cccEeEEEEcCCCCeEEEee-CCCeEEEEE--CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC--
Q 018784 94 DEKHSFEH-KHIVRACAFSEDTHLLLTGG-FEKILRIFD--LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-- 167 (350)
Q Consensus 94 ~~~~~~~h-~~~V~~~~~~~~~~~l~sg~-~d~~v~vwd--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-- 167 (350)
........ ........|+|||+.|+..+ .++...+|. +.........+......+....|+|+++.++.+...+
T Consensus 271 ~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~ 350 (428)
T PRK01029 271 KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGV 350 (428)
T ss_pred cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCC
Confidence 22222222 23446779999999877654 466556664 4321222232333344566788998777776665543
Q ss_pred CeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE-Ec---CCcEEEEECCCcce
Q 018784 168 GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-AD---GSSVKFWDANHFGL 220 (350)
Q Consensus 168 g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~---~~~i~vwd~~~~~~ 220 (350)
..|.+||+.+++..........+....|+|||+.|+. +. ...|.++|+.....
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred cEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 3699999988876443333345677889999987753 32 24688888866543
No 269
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.05 E-value=5.5e-07 Score=80.15 Aligned_cols=169 Identities=18% Similarity=0.231 Sum_probs=127.2
Q ss_pred CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCC-eEEEeeCCCCCeeeeeeccccEeEE
Q 018784 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADF-TAKLWDALTGDEKHSFEHKHIVRAC 108 (350)
Q Consensus 30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg-~v~vWd~~~~~~~~~~~h~~~V~~~ 108 (350)
+|.++|..|. |+..|.+...+..+. -+|.+.|+=..+..++.-++-|-.|| .+-|+|..+++.......-+.|.++
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av 407 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAV 407 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEE
Confidence 5779998887 778887766555442 36778898888888888888899999 8999999988877666666789999
Q ss_pred EEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe----CCCeEEEEECCCCceeEee
Q 018784 109 AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT----DSGGVRLWDARSGKIVQTL 184 (350)
Q Consensus 109 ~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~----~dg~i~iwd~~~~~~~~~~ 184 (350)
..+|+|++++.+-....+.+.|++++... .......+-|+.+.|+++.. +++-+- ....|+++|+..++....-
T Consensus 408 ~vs~dGK~~vvaNdr~el~vididngnv~-~idkS~~~lItdf~~~~nsr-~iAYafP~gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 408 KVSPDGKKVVVANDRFELWVIDIDNGNVR-LIDKSEYGLITDFDWHPNSR-WIAYAFPEGYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred EEcCCCcEEEEEcCceEEEEEEecCCCee-EecccccceeEEEEEcCCce-eEEEecCcceeeeeEEEEecCCCeEEEec
Confidence 99999999999998889999999876543 23345567899999986544 444333 3357999999988876544
Q ss_pred cCCCCeEEEEEecCCcEEE
Q 018784 185 ETKSPVTSAEVSRDGRYIT 203 (350)
Q Consensus 185 ~~~~~v~~~~~~~~~~~l~ 203 (350)
.....=.+-+|.|++++|.
T Consensus 486 T~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 486 TPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred CCcccccCcccCCCCcEEE
Confidence 4333334556888988763
No 270
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.03 E-value=1.5e-08 Score=84.72 Aligned_cols=149 Identities=15% Similarity=0.203 Sum_probs=109.1
Q ss_pred CCCccEEEEEeCCCCeeEeeCCCCceee--eccCccCCeEEEEECC-CCcEEEEeeCCCeEEEeeCCCCC-eee--eeec
Q 018784 28 TPDGFFLVSASKDSSPMLRNGETGDWIG--TFEGHKGAVWSCCLDA-NALFSASGSADFTAKLWDALTGD-EKH--SFEH 101 (350)
Q Consensus 28 s~dg~~lasgs~d~~v~iw~~~~~~~~~--~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~-~~~--~~~h 101 (350)
++.|.-++++-.+|.+.+-+.......+ ++++|.-.++.+.|+. +..++.|||.|+.+..||+.... .+. ...|
T Consensus 130 ~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH 209 (339)
T KOG0280|consen 130 STSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVH 209 (339)
T ss_pred eccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceee
Confidence 3467778888888888865544444444 7899999999999964 56799999999999999987322 222 2358
Q ss_pred cccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCC-cEEEEEeCCCeEEEEECCCC
Q 018784 102 KHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ-TILSSCTDSGGVRLWDARSG 178 (350)
Q Consensus 102 ~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~s~~~dg~i~iwd~~~~ 178 (350)
...|.++.-+| .+.+++||+.|..|++||.+.-..+... ....+.|+-+.+.|... .++++|.. +..+|-++..+
T Consensus 210 ~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~-~~v~GGVWRi~~~p~~~~~lL~~CMh-~G~ki~~~~~~ 286 (339)
T KOG0280|consen 210 TSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK-AKVGGGVWRIKHHPEIFHRLLAACMH-NGAKILDSSDK 286 (339)
T ss_pred ecceEEEecCCCCCceEEEeccccceeeeehhcccCcccc-CccccceEEEEecchhhhHHHHHHHh-cCceEEEeccc
Confidence 88899998876 6789999999999999999865544433 33447788998887654 45566655 45677776544
No 271
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.02 E-value=7.2e-07 Score=80.01 Aligned_cols=277 Identities=16% Similarity=0.203 Sum_probs=169.9
Q ss_pred ceeEEEecccCCCccEEEEEeC---------------CCCeeEeeCCCCceeeeccCccCC--eE-EEEECCCCcEEEEe
Q 018784 18 PVVDLFYSPITPDGFFLVSASK---------------DSSPMLRNGETGDWIGTFEGHKGA--VW-SCCLDANALFSASG 79 (350)
Q Consensus 18 ~v~~~~~~~~s~dg~~lasgs~---------------d~~v~iw~~~~~~~~~~l~gH~~~--V~-~v~~~~~~~~l~s~ 79 (350)
.|..+.|+ |.++||.|=+. ++.+.+||..+|..+..+.+-..+ .+ .+.|+.+..++|=-
T Consensus 73 ~V~~~~fS---P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv 149 (561)
T COG5354 73 DVKYLDFS---PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV 149 (561)
T ss_pred CceecccC---cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh
Confidence 45555555 59999988764 334899999999999999887766 66 67888888776533
Q ss_pred eCCCeEEEeeCCCCCeeeeee--ccccEeEEEEcCCC--CeEEE-----eeCCCeEEEEECCCCCCCCeeecCCCCcEEE
Q 018784 80 SADFTAKLWDALTGDEKHSFE--HKHIVRACAFSEDT--HLLLT-----GGFEKILRIFDLNRPDAPPREVGNSSGSIRT 150 (350)
Q Consensus 80 s~Dg~v~vWd~~~~~~~~~~~--h~~~V~~~~~~~~~--~~l~s-----g~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~ 150 (350)
....+.|+++..+-...-+. ....+....++|.+ ..|+. .+...++++|.+...... ....-....-..
T Consensus 150 -v~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l-~tk~lfk~~~~q 227 (561)
T COG5354 150 -VGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVL-VTKNLFKVSGVQ 227 (561)
T ss_pred -ccCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCee-eeeeeEeecccE
Confidence 34578888872222222111 12346677777753 33433 567888999988643221 111001112234
Q ss_pred EEEeCCCCcEEEEE----------eCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE---cCCcEEEEECCC
Q 018784 151 VAWLHSDQTILSSC----------TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA---DGSSVKFWDANH 217 (350)
Q Consensus 151 ~~~~~~~~~~~~s~----------~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~~~i~vwd~~~ 217 (350)
+.|...+..+++-. .....+.|++++...+........+|...+|.|.++.++.. ....+.++|++.
T Consensus 228 LkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 228 LKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeeccccc
Confidence 45554444333211 12357888988755444444567899999999988765543 356789999886
Q ss_pred cceeeeeecCCCC-ceeEecCCCCcEEEEecCC---CeEEEEEcccCeeEE-eecCCCcCEEEEEEcCCCCEEEEec---
Q 018784 218 FGLVKGYNMPCNT-ESASLEPKLGNIFIAGGED---MWVHVFDFHTGEQIG-CNKGHHGPVHCVRFSPGGESYASGS--- 289 (350)
Q Consensus 218 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d---~~i~v~d~~~~~~~~-~~~~h~~~v~~l~~sp~~~~lasgs--- 289 (350)
. +. +..+... ....|+| ..++++.++-| |.|.+||....-... .+.+-. ..-+.|+|+++++.+.-
T Consensus 308 N--l~-~~~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 308 N--LR-FYFPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSE 381 (561)
T ss_pred c--eE-EecCCcccccccccC-cccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCc
Confidence 5 22 2333333 3344444 56777776654 579999976554433 444333 24467999999876543
Q ss_pred ---CCCcEEEecCCCCCcc
Q 018784 290 ---EDGTIRIWQTNPPNHE 305 (350)
Q Consensus 290 ---~Dg~v~vw~~~~~~~~ 305 (350)
.|..|+||++..+..-
T Consensus 382 k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 382 KLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred ccccCcceEEEEecCchhh
Confidence 4889999998755444
No 272
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.01 E-value=1e-08 Score=86.31 Aligned_cols=210 Identities=19% Similarity=0.327 Sum_probs=136.7
Q ss_pred cCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC-----CceeeeccCccC------------CeEEEEECCCC-c-E
Q 018784 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET-----GDWIGTFEGHKG------------AVWSCCLDANA-L-F 75 (350)
Q Consensus 15 H~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~-----~~~~~~l~gH~~------------~V~~v~~~~~~-~-~ 75 (350)
-.+-|++|-|.. .|.||++|...|.|.++.-+. .+..+.|++|.. .|..+.|-.++ + .
T Consensus 25 ead~ItaVefd~---tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 25 EADKITAVEFDE---TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred ccceeeEEEecc---ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 355678888875 788999999989998876443 234556777764 35666664432 2 3
Q ss_pred EEEeeCCCeEEEeeCCCCC-------------------ee-----------------------eee--eccccEeEEEEc
Q 018784 76 SASGSADFTAKLWDALTGD-------------------EK-----------------------HSF--EHKHIVRACAFS 111 (350)
Q Consensus 76 l~s~s~Dg~v~vWd~~~~~-------------------~~-----------------------~~~--~h~~~V~~~~~~ 111 (350)
+.-...|.+|++|.+.... ++ +.+ .|+-.+.++.|+
T Consensus 102 FLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N 181 (460)
T COG5170 102 FLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN 181 (460)
T ss_pred EEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec
Confidence 3444699999999764320 00 000 155567889999
Q ss_pred CCCCeEEEeeCCCeEEEEECCCCCCCCe--eecCC-----CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCcee---
Q 018784 112 EDTHLLLTGGFEKILRIFDLNRPDAPPR--EVGNS-----SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV--- 181 (350)
Q Consensus 112 ~~~~~l~sg~~d~~v~vwd~~~~~~~~~--~~~~~-----~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~--- 181 (350)
.+.+.++++ .|-.|.+|+++....... ..++| ...|++..|.|....++.-.+..|+|++-|+|+....
T Consensus 182 sD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 182 SDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred Cchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 988888765 477899999875433211 11222 2346666676665555554556699999999954321
Q ss_pred ---Eee--cC---------CCCeEEEEEecCCcEEEEEcCCcEEEEECCCc-ceeeeeecCC
Q 018784 182 ---QTL--ET---------KSPVTSAEVSRDGRYITTADGSSVKFWDANHF-GLVKGYNMPC 228 (350)
Q Consensus 182 ---~~~--~~---------~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~-~~~~~~~~~~ 228 (350)
... .. -..|..+.|+++|+++++.+=-++++||.+.. .++++..+++
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHH
Confidence 111 11 14677889999999999888789999998764 4666665543
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.99 E-value=2.4e-07 Score=84.35 Aligned_cols=184 Identities=13% Similarity=0.185 Sum_probs=134.2
Q ss_pred CCccEEEEEeCCCCeeEeeCCCCceeeeccC--cc-CC----eEEEEE----------------CCCCcEEEEeeCCCeE
Q 018784 29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEG--HK-GA----VWSCCL----------------DANALFSASGSADFTA 85 (350)
Q Consensus 29 ~dg~~lasgs~d~~v~iw~~~~~~~~~~l~g--H~-~~----V~~v~~----------------~~~~~~l~s~s~Dg~v 85 (350)
|...++|..+.||.++||+..+++.-..|.. |. +. ++.+.. +.+-..++=|-..|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3567999999999999999988776555532 21 22 222211 1233466777788999
Q ss_pred EEeeCCCCCeeeee---eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEE
Q 018784 86 KLWDALTGDEKHSF---EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILS 162 (350)
Q Consensus 86 ~vWd~~~~~~~~~~---~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 162 (350)
.+++...++....+ .|.+.|.++.++.+...|.+++.|..+..|+........ ........+.+++.++ ++.+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~-~~~~~~~~~~sl~is~-D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR-IWKEQKPLVSSLCISP-DGKILL 160 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeee-eeccCCCccceEEEcC-CCCEEE
Confidence 99999888766665 489999999999999999999999999999986543322 2234455677777765 477777
Q ss_pred EEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecC-----CcEEEEEc--CCcEEEEECC
Q 018784 163 SCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRD-----GRYITTAD--GSSVKFWDAN 216 (350)
Q Consensus 163 s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~-----~~~l~~~~--~~~i~vwd~~ 216 (350)
+++ ++|++||+++++.+..+.++ +++..+.|..+ |+++.++. +..+.+|-..
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 766 58999999999999999865 68888998766 66665543 3456777543
No 274
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.95 E-value=2e-09 Score=63.95 Aligned_cols=39 Identities=38% Similarity=0.660 Sum_probs=37.1
Q ss_pred CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784 51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (350)
Q Consensus 51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd 89 (350)
++++.++.+|++.|++++|+|++.+++|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 275
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.95 E-value=1.9e-06 Score=79.46 Aligned_cols=255 Identities=13% Similarity=0.065 Sum_probs=152.4
Q ss_pred cEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEE-EEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEE--
Q 018784 32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS-CCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRAC-- 108 (350)
Q Consensus 32 ~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~-v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~-- 108 (350)
..|..++.++.+.-+|.++|+.+....... .+.+ ..+ .++. ++.+..++.+..+|..+++.+...........+
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v-~~~~-v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~ 197 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV-SDGL-VLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG 197 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE-ECCE-EEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence 355667788999999999998877665332 2221 111 1344 445677899999999999988776532211000
Q ss_pred EEcC--CCCeEEEeeCCCeEEEEECCCCCCCCeeec-CCCC-----cE----EEEEEeCCCCcEEEEEeCCCeEEEEECC
Q 018784 109 AFSE--DTHLLLTGGFEKILRIFDLNRPDAPPREVG-NSSG-----SI----RTVAWLHSDQTILSSCTDSGGVRLWDAR 176 (350)
Q Consensus 109 ~~~~--~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-~~~~-----~v----~~~~~~~~~~~~~~s~~~dg~i~iwd~~ 176 (350)
..+| .+..++.++.++.+..+|..+++....... ...+ .. .+... .++.++ .++.++.+..+|+.
T Consensus 198 ~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v--~~~~vy-~~~~~g~l~ald~~ 274 (394)
T PRK11138 198 ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV--VGGVVY-ALAYNGNLVALDLR 274 (394)
T ss_pred CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE--ECCEEE-EEEcCCeEEEEECC
Confidence 0112 123566677888888888876654332211 0000 00 01111 134444 45567999999999
Q ss_pred CCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCC-CC-ceeEecCCCCcEEEEecCCCeEEE
Q 018784 177 SGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPC-NT-ESASLEPKLGNIFIAGGEDMWVHV 254 (350)
Q Consensus 177 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~sg~~d~~i~v 254 (350)
+|+.+........ ..+.. .++++++...++.+..+|..++..+....... .. ....+ .+.+++.++.||.|++
T Consensus 275 tG~~~W~~~~~~~-~~~~~-~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v---~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 275 SGQIVWKREYGSV-NDFAV-DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL---YNGYLVVGDSEGYLHW 349 (394)
T ss_pred CCCEEEeecCCCc-cCcEE-ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE---ECCEEEEEeCCCEEEE
Confidence 9988766543321 11222 34566667778899999998876654332211 11 11111 2567788899999999
Q ss_pred EEcccCeeEEeecCCCcCEEE-EEEcCCCCEEEEecCCCcEEEecC
Q 018784 255 FDFHTGEQIGCNKGHHGPVHC-VRFSPGGESYASGSEDGTIRIWQT 299 (350)
Q Consensus 255 ~d~~~~~~~~~~~~h~~~v~~-l~~sp~~~~lasgs~Dg~v~vw~~ 299 (350)
+|..+|+.+....-....+.+ -.+ .+..|+.++.||.|+.++.
T Consensus 350 ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 350 INREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 999999987665433322322 122 2346778899999988764
No 276
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.94 E-value=5.8e-07 Score=76.74 Aligned_cols=215 Identities=18% Similarity=0.131 Sum_probs=129.4
Q ss_pred CCCeeEeeCCCCceeeeccC-c-cCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeE
Q 018784 40 DSSPMLRNGETGDWIGTFEG-H-KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLL 117 (350)
Q Consensus 40 d~~v~iw~~~~~~~~~~l~g-H-~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l 117 (350)
+++|..+|..+|+.+....- . .....+..+ +++..++.++.++.+..||..+++.+........+.... ...+..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eeccccc
Confidence 57888899988888776632 0 122221122 244555566899999999999999887776433322222 2234556
Q ss_pred EEeeCCCeEEEEECCCCCCCCee-ecCC--CC--cEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCC---
Q 018784 118 LTGGFEKILRIFDLNRPDAPPRE-VGNS--SG--SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP--- 189 (350)
Q Consensus 118 ~sg~~d~~v~vwd~~~~~~~~~~-~~~~--~~--~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~--- 189 (350)
+.+..++.+..+|+.+++..... .... .. ........ +..++.+..++.|..+|+++|+.+.......+
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD---GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE---TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred ccccceeeeEecccCCcceeeeeccccccccccccccCceEe---cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 66778889999998877655442 2111 01 11122222 33445555679999999999999877765321
Q ss_pred --------eEEEEEecCCcEEEEEcCCc-EEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccC
Q 018784 190 --------VTSAEVSRDGRYITTADGSS-VKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG 260 (350)
Q Consensus 190 --------v~~~~~~~~~~~l~~~~~~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~ 260 (350)
+..-.+..++.++++..++. +.+ |..+++.+.... . ........ ..+..+++++.++.|..||+.+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~-~-~~~~~~~~-~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP-I-SGIYSLPS-VDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp --EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC-S-S-ECECEE-CCCTEEEEEETTTEEEEEETTTT
T ss_pred cceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec-C-CCccCCce-eeCCEEEEEeCCCEEEEEECCCC
Confidence 12222334556666665664 555 999887554322 1 11111122 23566666669999999999999
Q ss_pred eeE
Q 018784 261 EQI 263 (350)
Q Consensus 261 ~~~ 263 (350)
+.+
T Consensus 233 ~~~ 235 (238)
T PF13360_consen 233 KVV 235 (238)
T ss_dssp EEE
T ss_pred CEE
Confidence 864
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.92 E-value=7.2e-06 Score=82.68 Aligned_cols=276 Identities=13% Similarity=0.223 Sum_probs=175.1
Q ss_pred CceeEEEecccCCCccEEEEEeCCCCeeEe----eCCCC--ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLR----NGETG--DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (350)
Q Consensus 17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw----~~~~~--~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~ 90 (350)
+.|.++.|-+ |...+..+..+|.|.+. +.... +.+..++ ..|.+++|+||..+++-...++++.+-..
T Consensus 76 ~~ivs~~yl~---d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd---~GI~a~~WSPD~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 76 DKIVSFQYLA---DSESLCIALASGDIILVREDPDPDEDEIEIVGSVD---SGILAASWSPDEELLALVTGEGNLLLMTR 149 (928)
T ss_pred CcEEEEEecc---CCCcEEEEECCceEEEEEccCCCCCceeEEEEEEc---CcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence 4677777765 77778888888998888 44333 3334443 68999999999999988888888877531
Q ss_pred C-------------CCC--ee--------eee-------------------------eccccEeEEEEcCCCCeEEEeeC
Q 018784 91 L-------------TGD--EK--------HSF-------------------------EHKHIVRACAFSEDTHLLLTGGF 122 (350)
Q Consensus 91 ~-------------~~~--~~--------~~~-------------------------~h~~~V~~~~~~~~~~~l~sg~~ 122 (350)
. .+. .+ ..+ .....-..+.|-.||+++|+.+-
T Consensus 150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~ 229 (928)
T PF04762_consen 150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV 229 (928)
T ss_pred cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence 0 010 00 000 01112346789999999998764
Q ss_pred ------CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeC---CCeEEEEECCCCceeEeec-----CCC
Q 018784 123 ------EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTD---SGGVRLWDARSGKIVQTLE-----TKS 188 (350)
Q Consensus 123 ------d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~---dg~i~iwd~~~~~~~~~~~-----~~~ 188 (350)
-+.+|||+-+ +.. ........+--.+++|-|.+. ++++.-. ...|.+|. |+|-....+. ...
T Consensus 230 ~~~~~~~R~iRVy~Re-G~L-~stSE~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~ 305 (928)
T PF04762_consen 230 EPETGSRRVIRVYSRE-GEL-QSTSEPVDGLEGALSWRPSGN-LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEE 305 (928)
T ss_pred EcCCCceeEEEEECCC-ceE-EeccccCCCccCCccCCCCCC-EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCc
Confidence 2679999865 221 111112233344678877655 4444332 24677777 5554333332 235
Q ss_pred CeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecC--C--CCceeEecCCCCcEEEEecCCCeEEEEEc----ccC
Q 018784 189 PVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMP--C--NTESASLEPKLGNIFIAGGEDMWVHVFDF----HTG 260 (350)
Q Consensus 189 ~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~l~sg~~d~~i~v~d~----~~~ 260 (350)
.+..+.|++++.+|+..-...|.+|-..++....++... . ....+.+++.....|...+.++.+..+++ ..+
T Consensus 306 ~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s 385 (928)
T PF04762_consen 306 KVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRS 385 (928)
T ss_pred eeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEec
Confidence 789999999999998876667999999888755444332 2 22346777776777777777666655443 211
Q ss_pred e--------eEEe----------e-------------cCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784 261 E--------QIGC----------N-------------KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP 302 (350)
Q Consensus 261 ~--------~~~~----------~-------------~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~ 302 (350)
. .+.. + -....+|.+++|++++..+|.-..||.|.+|.....
T Consensus 386 ~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 386 PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 1 0111 0 112467999999999888999999999999985443
No 278
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.91 E-value=3.7e-09 Score=62.72 Aligned_cols=39 Identities=41% Similarity=0.848 Sum_probs=36.3
Q ss_pred CeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784 260 GEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 260 ~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~ 298 (350)
|+++..+.+|..+|++|+|+|++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 356778899999999999999999999999999999997
No 279
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.91 E-value=2.8e-05 Score=67.35 Aligned_cols=260 Identities=15% Similarity=0.207 Sum_probs=160.3
Q ss_pred ccCCceeEEEecccCCCccEEEEEeCC---CCeeE--eeCCCCceee----eccCccCCeEEEEECCCCcEEEEeeCC-C
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSASKD---SSPML--RNGETGDWIG----TFEGHKGAVWSCCLDANALFSASGSAD-F 83 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasgs~d---~~v~i--w~~~~~~~~~----~l~gH~~~V~~v~~~~~~~~l~s~s~D-g 83 (350)
.+.+.++=++++| +.+.|.++-.+ +.+-- ||..+|++.. .+.|+.. .-+++++++++++++.-. |
T Consensus 37 ~~~~nptyl~~~~---~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p--~yvsvd~~g~~vf~AnY~~g 111 (346)
T COG2706 37 AELGNPTYLAVNP---DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP--CYVSVDEDGRFVFVANYHSG 111 (346)
T ss_pred cccCCCceEEECC---CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC--eEEEECCCCCEEEEEEccCc
Confidence 3455566666665 88888777655 44444 4444465532 2333322 568999999999887654 8
Q ss_pred eEEEeeCCC-CCee---eeeecccc----------EeEEEEcCCCCeEEEeeC-CCeEEEEECCCCCCCCee--ecCCCC
Q 018784 84 TAKLWDALT-GDEK---HSFEHKHI----------VRACAFSEDTHLLLTGGF-EKILRIFDLNRPDAPPRE--VGNSSG 146 (350)
Q Consensus 84 ~v~vWd~~~-~~~~---~~~~h~~~----------V~~~~~~~~~~~l~sg~~-d~~v~vwd~~~~~~~~~~--~~~~~~ 146 (350)
.|.+..+.. +... ..+.|.+. +.+..|.|++++|++..- -..|.+|++..+...... ......
T Consensus 112 ~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~ 191 (346)
T COG2706 112 SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA 191 (346)
T ss_pred eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence 899998754 3322 23345544 888999999999988753 346899999865443221 113344
Q ss_pred cEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC-ceeEeec----------CCCCeEEEEEecCCcEEEEEcCC--cEEEE
Q 018784 147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLE----------TKSPVTSAEVSRDGRYITTADGS--SVKFW 213 (350)
Q Consensus 147 ~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~~--~i~vw 213 (350)
..+.+.|.|..+...+.+--+++|.+|..... ..+..++ .......+.+++||++|.+++.+ .|-+|
T Consensus 192 GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f 271 (346)
T COG2706 192 GPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVF 271 (346)
T ss_pred CcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEE
Confidence 56788888777766777888899999998763 2222222 23567788999999999988754 57776
Q ss_pred ECCCc--ce--eeeeecCCC-CceeEecCCCCcEEEEecCCC-eEEEEEcc--cCeeEEeec-CCCcCEEEEEEc
Q 018784 214 DANHF--GL--VKGYNMPCN-TESASLEPKLGNIFIAGGEDM-WVHVFDFH--TGEQIGCNK-GHHGPVHCVRFS 279 (350)
Q Consensus 214 d~~~~--~~--~~~~~~~~~-~~~~~~~~~~~~~l~sg~~d~-~i~v~d~~--~~~~~~~~~-~h~~~v~~l~~s 279 (350)
.+... .+ +........ +....+.+ .+++|++..+++ .|.+|..+ +|++-.... .......||.|.
T Consensus 272 ~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 272 SVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred EEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 55432 21 111222222 33444554 467777776654 58888654 555533332 233345666664
No 280
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=5.8e-08 Score=85.63 Aligned_cols=276 Identities=16% Similarity=0.154 Sum_probs=179.4
Q ss_pred cCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCC---CceeeeccCccCCeEEEEECCCCcEEEEeeC-CCeEEEeeC
Q 018784 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGET---GDWIGTFEGHKGAVWSCCLDANALFSASGSA-DFTAKLWDA 90 (350)
Q Consensus 15 H~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~---~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~-Dg~v~vWd~ 90 (350)
|.+.|+.+... -.+++.++|-||.++.|-... -+.+..+..|-..|.+++.+-++.++.|.+. |..+|++|+
T Consensus 8 hrd~i~hv~~t----ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 8 HRDVITHVFPT----KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred ccceeeeEeee----hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 77778877654 356999999999999998543 3566677889999999999999999999887 999999998
Q ss_pred CCCCeeeeee---ccccEeEEEEcCC-CC-eE-EEeeCCCeEEEEECCCCC-CCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784 91 LTGDEKHSFE---HKHIVRACAFSED-TH-LL-LTGGFEKILRIFDLNRPD-APPREVGNSSGSIRTVAWLHSDQTILSS 163 (350)
Q Consensus 91 ~~~~~~~~~~---h~~~V~~~~~~~~-~~-~l-~sg~~d~~v~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~s 163 (350)
+.-....-+. -++.+.++ .++. .. .+ ++.-.++.+.++|-.... ......+-|..+|..+.+.+.. ..++|
T Consensus 84 En~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~-Ds~vS 161 (558)
T KOG0882|consen 84 ENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAG-DSAVS 161 (558)
T ss_pred eccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccc-cceee
Confidence 7665432222 22222221 2222 11 23 333457889999875444 3334456678888888877544 45666
Q ss_pred EeCCCeEEEEECCC------CceeEeec----------CCCCeEEEEEecCCcEEEE-EcCCcEEEEECCCcceeeeeec
Q 018784 164 CTDSGGVRLWDARS------GKIVQTLE----------TKSPVTSAEVSRDGRYITT-ADGSSVKFWDANHFGLVKGYNM 226 (350)
Q Consensus 164 ~~~dg~i~iwd~~~------~~~~~~~~----------~~~~v~~~~~~~~~~~l~~-~~~~~i~vwd~~~~~~~~~~~~ 226 (350)
....|.|..|.... .+....++ ......++.|+|++..+.+ +.|..||+++.++++.++.+.-
T Consensus 162 iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 162 IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred ccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 66679999998762 12222222 2345678999999988865 4688999999988776543320
Q ss_pred ---------------------------------CCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC-----
Q 018784 227 ---------------------------------PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG----- 268 (350)
Q Consensus 227 ---------------------------------~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~----- 268 (350)
.............+++|+.|+-=| |++.++.+++.++.+.-
T Consensus 242 ~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~e~ir 320 (558)
T KOG0882|consen 242 VLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKDEAIR 320 (558)
T ss_pred cchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccchhhh
Confidence 000111122233578888877654 78888888876654311
Q ss_pred -------------CCcCE-------EEEEEcCCCCEEEEecCCCcEEEe
Q 018784 269 -------------HHGPV-------HCVRFSPGGESYASGSEDGTIRIW 297 (350)
Q Consensus 269 -------------h~~~v-------~~l~~sp~~~~lasgs~Dg~v~vw 297 (350)
+.... ..+.+.+|..+++++=...+++++
T Consensus 321 ~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 321 FTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred hhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 11100 113356666667777777888888
No 281
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.91 E-value=2.2e-06 Score=74.04 Aligned_cols=220 Identities=14% Similarity=0.168 Sum_probs=138.6
Q ss_pred CCeEEEeeCCCCCe----eeeeeccccEeEEEEcCCCCeEEEeeC---CCeEEEEECCCC--CCCCeeecCC-CCcEEEE
Q 018784 82 DFTAKLWDALTGDE----KHSFEHKHIVRACAFSEDTHLLLTGGF---EKILRIFDLNRP--DAPPREVGNS-SGSIRTV 151 (350)
Q Consensus 82 Dg~v~vWd~~~~~~----~~~~~h~~~V~~~~~~~~~~~l~sg~~---d~~v~vwd~~~~--~~~~~~~~~~-~~~v~~~ 151 (350)
++-|.+|++.+... .........++-++|+|+.+.|+++-. ++.|..|.++.. .......... ....+-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 67889998874332 223356677899999999999998754 577888887642 2211111111 1222566
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEECCC-Cce---eEeecCCCC----------eEEEEEecCCcEEEEEcC--CcEEEEEC
Q 018784 152 AWLHSDQTILSSCTDSGGVRLWDARS-GKI---VQTLETKSP----------VTSAEVSRDGRYITTADG--SSVKFWDA 215 (350)
Q Consensus 152 ~~~~~~~~~~~s~~~dg~i~iwd~~~-~~~---~~~~~~~~~----------v~~~~~~~~~~~l~~~~~--~~i~vwd~ 215 (350)
+..++++.++++...-|.|.++-++. |.+ +..+.+..+ +....++|+++++++.+= ..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 66666656666666668999999865 432 233333332 777889999999887653 46999998
Q ss_pred CCcceeeeee--c--CCCCceeEecCCCCcEEEEecCCCeEEEEEcccC-eeEEeecCC---------CcCEEEEEEcCC
Q 018784 216 NHFGLVKGYN--M--PCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTG-EQIGCNKGH---------HGPVHCVRFSPG 281 (350)
Q Consensus 216 ~~~~~~~~~~--~--~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~-~~~~~~~~h---------~~~v~~l~~sp~ 281 (350)
..+++..... . ...+.-+.|+|...-..++.-.+++|-+|..... ..+..++.+ ..+.-++..+||
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 8655432211 1 1234456677653333556667999999998763 233332221 235678899999
Q ss_pred CCEEEEecC-CCcEEEecCCC
Q 018784 282 GESYASGSE-DGTIRIWQTNP 301 (350)
Q Consensus 282 ~~~lasgs~-Dg~v~vw~~~~ 301 (350)
|++|..+-. ...|.++.+++
T Consensus 255 GrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcC
Confidence 999876442 34777777654
No 282
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.90 E-value=4e-07 Score=75.42 Aligned_cols=218 Identities=13% Similarity=0.085 Sum_probs=132.4
Q ss_pred CCeEEEeeCCCCC--eeeeeeccccEeEEEEcC-----CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEe
Q 018784 82 DFTAKLWDALTGD--EKHSFEHKHIVRACAFSE-----DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWL 154 (350)
Q Consensus 82 Dg~v~vWd~~~~~--~~~~~~h~~~V~~~~~~~-----~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 154 (350)
-..|.+|+..+.. .+.. -..+.|.| ...+||.||.-|...+|.+.+.+........+...|.-+.-.
T Consensus 51 t~sv~i~~~y~N~~~iv~~------y~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~ 124 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEF------YTGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY 124 (344)
T ss_pred eeeeEeccccCCchhhEEe------eecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh
Confidence 4456778775543 1111 13445544 345789999999999999886555444444444333222111
Q ss_pred CCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCcc--eeeeeecCC--
Q 018784 155 HSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG--LVKGYNMPC-- 228 (350)
Q Consensus 155 ~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~--~~~~~~~~~-- 228 (350)
-....-+.-++.|.++++.++.-+.....+..+ -..+++.++++++++++- +...|.+|.+.... .++.+..+.
T Consensus 125 cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D 204 (344)
T KOG4532|consen 125 CDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSD 204 (344)
T ss_pred cccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCC
Confidence 111222445678889999888654332222222 237889999999998765 44678888775432 333222221
Q ss_pred CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeE-E----eecCCCcCEEEEEEcCCCC--EEEEecCCCcEEEecCCC
Q 018784 229 NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI-G----CNKGHHGPVHCVRFSPGGE--SYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 229 ~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~-~----~~~~h~~~v~~l~~sp~~~--~lasgs~Dg~v~vw~~~~ 301 (350)
.....++.. ....+|++.+||++.|||++.-... . +-..|.+++..+.|+|.|. +|.-.-.-+.+.+-|++.
T Consensus 205 ~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~ 283 (344)
T KOG4532|consen 205 HGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN 283 (344)
T ss_pred Cceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence 122334443 4678999999999999999864322 1 1235889999999998764 344444556788888876
Q ss_pred CCccc
Q 018784 302 PNHEE 306 (350)
Q Consensus 302 ~~~~~ 306 (350)
....+
T Consensus 284 ~~~~q 288 (344)
T KOG4532|consen 284 YVNHQ 288 (344)
T ss_pred Cceee
Confidence 55443
No 283
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.89 E-value=4.5e-08 Score=80.50 Aligned_cols=143 Identities=13% Similarity=0.049 Sum_probs=94.6
Q ss_pred CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEE-----EEECCCCcEEEEeeCCCeE------EEeeCCCCCeeee
Q 018784 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWS-----CCLDANALFSASGSADFTA------KLWDALTGDEKHS 98 (350)
Q Consensus 30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~-----v~~~~~~~~l~s~s~Dg~v------~vWd~~~~~~~~~ 98 (350)
.+.-++++..|+.+-+.+.+. ...+. |+-++.. .+.-..+.++.+ +.=|++ +.|++...+....
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~---~~~~~-~~i~~~~~~~as~~~~~~~~~i~s-~~~g~~n~~d~~~a~~~~p~~t~~~ 174 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDK---DLALM-SRIPSIHSGSASRKICRHGNSILS-GGCGNWNAQDNFYANTLDPIKTLIP 174 (319)
T ss_pred cCCceEecCCCceEEEEechH---HHhhh-hhcccccccccccceeecccEEec-CCcceEeeccceeeecccccccccc
Confidence 356789999999999988665 21222 1111111 112223444333 233333 3444322111111
Q ss_pred -eeccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECC
Q 018784 99 -FEHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176 (350)
Q Consensus 99 -~~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~ 176 (350)
...-..|.+++-+|. .+++++|+.||.+.+||++....+......|+..++.+.|.|.++..+.+|++||.+..||..
T Consensus 175 ~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 175 SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 011234888888984 566778899999999999988888888889999999999999888889999999999999965
Q ss_pred C
Q 018784 177 S 177 (350)
Q Consensus 177 ~ 177 (350)
+
T Consensus 255 ~ 255 (319)
T KOG4714|consen 255 T 255 (319)
T ss_pred C
Confidence 3
No 284
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.88 E-value=6.3e-06 Score=69.26 Aligned_cols=218 Identities=16% Similarity=0.136 Sum_probs=119.5
Q ss_pred EEECCCCcEEEEeeCCCeEEEeeCCCC----Ceeeee--eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCC---
Q 018784 67 CCLDANALFSASGSADFTAKLWDALTG----DEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP--- 137 (350)
Q Consensus 67 v~~~~~~~~l~s~s~Dg~v~vWd~~~~----~~~~~~--~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~--- 137 (350)
++.+.+|++||.- .|..|.|=..... ..+..+ .....=+-++|+||+.+||.+...|+|++||+.....-
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~ 81 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP 81 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC
Confidence 4556677766642 4555544322111 011111 11223467999999999999999999999998642211
Q ss_pred --CeeecCCCCcEEEEEEeCCC-----CcEEEEEeCCCeEEEEECCC-----CceeEeec----CCCCeEEEEEecCCcE
Q 018784 138 --PREVGNSSGSIRTVAWLHSD-----QTILSSCTDSGGVRLWDARS-----GKIVQTLE----TKSPVTSAEVSRDGRY 201 (350)
Q Consensus 138 --~~~~~~~~~~v~~~~~~~~~-----~~~~~s~~~dg~i~iwd~~~-----~~~~~~~~----~~~~v~~~~~~~~~~~ 201 (350)
....+.....|..+.|.+.. ...++.-..+|.++-+=+.. .+..+.+. ....|.++.++|..++
T Consensus 82 p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~L 161 (282)
T PF15492_consen 82 PAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRL 161 (282)
T ss_pred cccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCE
Confidence 01112233456666666432 12333344567777665422 23334433 2467999999999877
Q ss_pred EEEEc-C-C----------cEEEEECCCcceeeeeecCCCCceeEecCCCCcEE-EEecCCCe------EEEEEcccCee
Q 018784 202 ITTAD-G-S----------SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIF-IAGGEDMW------VHVFDFHTGEQ 262 (350)
Q Consensus 202 l~~~~-~-~----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~sg~~d~~------i~v~d~~~~~~ 262 (350)
|..+. . . .+..|-+-.. .+.+. +....|+. ..+|.+-+.+.
T Consensus 162 LlVgG~~~~~~~~s~a~~~GLtaWRiL~~--------------------~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~ 221 (282)
T PF15492_consen 162 LLVGGCEQNQDGMSKASSCGLTAWRILSD--------------------SPYYKQVTSSEDDITASSKRRGLLRIPSFKF 221 (282)
T ss_pred EEEeccCCCCCccccccccCceEEEEcCC--------------------CCcEEEccccCccccccccccceeeccceee
Confidence 65442 1 1 1222322111 11111 11121211 12333332222
Q ss_pred EEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784 263 IGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305 (350)
Q Consensus 263 ~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~ 305 (350)
..........|..|..||||.+||+...+|.|.+|+++.-...
T Consensus 222 fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 222 FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 2222234677999999999999999999999999998654443
No 285
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.5e-07 Score=88.73 Aligned_cols=182 Identities=18% Similarity=0.272 Sum_probs=133.0
Q ss_pred CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe
Q 018784 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDE 95 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~ 95 (350)
.+.+++++++ +++++-|+.+|.+.+.+.. +.. ++.-.|+.+ ..+|.+++|+|.||+|.|-.+.+.+.
T Consensus 39 ~D~is~~av~-----~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~ 105 (846)
T KOG2066|consen 39 NDAISCCAVH-----DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE 105 (846)
T ss_pred hhHHHHHHhh-----cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc
Confidence 3456666664 5689999999999998853 333 444556655 67899999999999999999999988
Q ss_pred eeeeeccccEeEEEEcCC-----CCeEEEeeCCCeEEEEECCC-CCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe
Q 018784 96 KHSFEHKHIVRACAFSED-----THLLLTGGFEKILRIFDLNR-PDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG 169 (350)
Q Consensus 96 ~~~~~h~~~V~~~~~~~~-----~~~l~sg~~d~~v~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~ 169 (350)
.+++.-..++.+++++|+ .+.+++||.-| +-++.-.- +...........|.|.++.|. +.+++-+.++ .
T Consensus 106 ~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~-G 180 (846)
T KOG2066|consen 106 ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDD-G 180 (846)
T ss_pred ceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCC-C
Confidence 888888889999999998 56889999888 66664211 111122345567899999985 5567666665 5
Q ss_pred EEEEECCCCceeEeecCCCC-------eEEEEEecCCcEEEEEcCCcEEEEECC
Q 018784 170 VRLWDARSGKIVQTLETKSP-------VTSAEVSRDGRYITTADGSSVKFWDAN 216 (350)
Q Consensus 170 i~iwd~~~~~~~~~~~~~~~-------v~~~~~~~~~~~l~~~~~~~i~vwd~~ 216 (350)
|+++|+.+++.+..++.+.+ -..+.|.++.+ |+.|-+.+|++..++
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 99999999988887765321 23456666544 455677788888776
No 286
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.85 E-value=2.1e-06 Score=73.29 Aligned_cols=213 Identities=18% Similarity=0.097 Sum_probs=127.2
Q ss_pred CCeEEEeeCCCCCeeeeeeccccEeEEE--EcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCc
Q 018784 82 DFTAKLWDALTGDEKHSFEHKHIVRACA--FSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQT 159 (350)
Q Consensus 82 Dg~v~vWd~~~~~~~~~~~h~~~V~~~~--~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 159 (350)
+|+|..||..+++.+............. ..+++..+++++.++.+..||..+++.............. . .. .++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~-~~-~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-P-VV-DGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-E-EE-ETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-e-ee-cccc
Confidence 6889999999999888775422122111 2335667778889999999999776544332221110111 1 11 2344
Q ss_pred EEEEEeCCCeEEEEECCCCceeEee-cCC----CCeEEEEEec-CCcEEEEEcCCcEEEEECCCcceeeeeecCCCCc--
Q 018784 160 ILSSCTDSGGVRLWDARSGKIVQTL-ETK----SPVTSAEVSR-DGRYITTADGSSVKFWDANHFGLVKGYNMPCNTE-- 231 (350)
Q Consensus 160 ~~~s~~~dg~i~iwd~~~~~~~~~~-~~~----~~v~~~~~~~-~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~-- 231 (350)
+++ +..++.|..+|+++|+.+... ... .......... ++.+++...++.|..+|+++++.+..+.......
T Consensus 79 v~v-~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~ 157 (238)
T PF13360_consen 79 VYV-GTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSS 157 (238)
T ss_dssp EEE-EETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS-
T ss_pred ccc-ccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCc
Confidence 443 446779999999999998884 322 1111222222 3345555568999999999999887776643221
Q ss_pred --------eeEecCCCCcEEEEecCCCe-EEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784 232 --------SASLEPKLGNIFIAGGEDMW-VHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP 302 (350)
Q Consensus 232 --------~~~~~~~~~~~l~sg~~d~~-i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~ 302 (350)
........+ .+..++.++. +.+ |+.+++.+-... ...+..+ ..+.+..|+.++.++.|..||+.+.
T Consensus 158 ~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 158 PISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp -EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTT
T ss_pred ceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCC
Confidence 111112234 5555555554 556 999998653222 2223321 3456777777779999999998765
Q ss_pred C
Q 018784 303 N 303 (350)
Q Consensus 303 ~ 303 (350)
+
T Consensus 233 ~ 233 (238)
T PF13360_consen 233 K 233 (238)
T ss_dssp E
T ss_pred C
Confidence 3
No 287
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.84 E-value=3e-08 Score=83.58 Aligned_cols=233 Identities=17% Similarity=0.198 Sum_probs=137.9
Q ss_pred cCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC-eee-----------------eeeccccEeEEEEcCCC--CeEEEe
Q 018784 61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKH-----------------SFEHKHIVRACAFSEDT--HLLLTG 120 (350)
Q Consensus 61 ~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~-~~~-----------------~~~h~~~V~~~~~~~~~--~~l~sg 120 (350)
...|++|.|...|.++++|...|.|.++.-+... +.. .+.-...|..+.|-.++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 3568899999999999999888999999854332 111 11123457777775433 456667
Q ss_pred eCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC--------ceeEeecCCCCeEE
Q 018784 121 GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG--------KIVQTLETKSPVTS 192 (350)
Q Consensus 121 ~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~v~~ 192 (350)
+.|++|++|.+................+ .+|-++.+... ..+++=.+... +.+..-.+.--+++
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~----~~~~~g~~~s~----~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNS 177 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSF----HSPMGGPLTST----KELLLPRLSEHDEIIAAKPCRVYANAHPYHINS 177 (460)
T ss_pred cCCceeeeeeeecccchhhhcccccccc----ccccCCCcCCH----HHhhcccccccceEEEeccceeccccceeEeee
Confidence 8899999999864432221111100000 01111111000 01111111110 11111113345889
Q ss_pred EEEecCCcEEEEEcCCcEEEEECCCcc-ee-----eeeecC---CCCceeEecCCCCcEEEEecCCCeEEEEEcccCee-
Q 018784 193 AEVSRDGRYITTADGSSVKFWDANHFG-LV-----KGYNMP---CNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ- 262 (350)
Q Consensus 193 ~~~~~~~~~l~~~~~~~i~vwd~~~~~-~~-----~~~~~~---~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~- 262 (350)
+.++.|...+.++++-.|.+|.+.-.. .. +...+. ....+..|+|..-.++...+.-|.|++-|++...+
T Consensus 178 iS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 178 ISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred eeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 999999999999999999999875422 11 111111 11234556666667888999999999999973221
Q ss_pred -----EEe----------ecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784 263 -----IGC----------NKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPP 302 (350)
Q Consensus 263 -----~~~----------~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~ 302 (350)
+.. +.+-...|..+.|+++|+++++-+. -+|+|||++-.
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 111 1223457889999999999987655 48999998643
No 288
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.84 E-value=9e-07 Score=73.34 Aligned_cols=199 Identities=13% Similarity=0.047 Sum_probs=128.9
Q ss_pred EEEecccCCC--ccEEEEEeCCCCeeEeeCCCCce-eeeccCccCCeEEE---EECCCCcEEEEeeCCCeEEEeeCCCCC
Q 018784 21 DLFYSPITPD--GFFLVSASKDSSPMLRNGETGDW-IGTFEGHKGAVWSC---CLDANALFSASGSADFTAKLWDALTGD 94 (350)
Q Consensus 21 ~~~~~~~s~d--g~~lasgs~d~~v~iw~~~~~~~-~~~l~gH~~~V~~v---~~~~~~~~l~s~s~Dg~v~vWd~~~~~ 94 (350)
.+.|-|.+-- -.+||.|+.-|...+|...+.+. +....-|...|.-+ |-... -+.-++.|.++++.++.-+.
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~--~~~i~sndht~k~~~~~~~s 149 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKF--PLNIASNDHTGKTMVVSGDS 149 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccccc--ceeeccCCcceeEEEEecCc
Confidence 4455553321 24889999999999999875443 33444455544322 22222 23345788898888876443
Q ss_pred eeeeeeccc--cEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC-e-eecCCCCcEEEEEEeCCCCcEEEEEeCCCeE
Q 018784 95 EKHSFEHKH--IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP-R-EVGNSSGSIRTVAWLHSDQTILSSCTDSGGV 170 (350)
Q Consensus 95 ~~~~~~h~~--~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-~-~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i 170 (350)
.... .|.. .+.++++++++.++++.+....|-.|.++...... . ........-.+..|+. ....++++..||++
T Consensus 150 ~~~~-~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~ 227 (344)
T KOG4532|consen 150 NKFA-VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTC 227 (344)
T ss_pred ccce-eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcE
Confidence 3222 2322 38899999999999999999999999886543222 1 2333344445566664 45567888999999
Q ss_pred EEEECCCCc-eeEee-----cCCCCeEEEEEecCCc--EEEEE-cCCcEEEEECCCcceeee
Q 018784 171 RLWDARSGK-IVQTL-----ETKSPVTSAEVSRDGR--YITTA-DGSSVKFWDANHFGLVKG 223 (350)
Q Consensus 171 ~iwd~~~~~-~~~~~-----~~~~~v~~~~~~~~~~--~l~~~-~~~~i~vwd~~~~~~~~~ 223 (350)
.|||+|.-. ++.+. .+.+.+..+.|++.|. +|.-+ .-+.+.+-|+|++...+.
T Consensus 228 ~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 228 AIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred EEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 999998753 32222 2456799999998663 33333 446899999998765443
No 289
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.84 E-value=4.1e-06 Score=75.32 Aligned_cols=275 Identities=17% Similarity=0.149 Sum_probs=167.6
Q ss_pred CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCe-----------
Q 018784 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFT----------- 84 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~----------- 84 (350)
.-|+..+.+|| -|++|++... .-|.+|....+..+..+. | ..|.-+.|+|.+.+|.|-+.-+.
T Consensus 32 ~~p~~~~~~SP---~G~~l~~~~~-~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 32 NWPVAYVSESP---LGTYLFSEHA-AGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred CcchhheeecC---cchheehhhc-cceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcc
Confidence 34566666665 8999987655 557999987766555554 2 66888999999999998765544
Q ss_pred ----EEEeeCCCCCeeeeeecccc---Ee-EEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecC-CCCcEEEEEEeC
Q 018784 85 ----AKLWDALTGDEKHSFEHKHI---VR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN-SSGSIRTVAWLH 155 (350)
Q Consensus 85 ----v~vWd~~~~~~~~~~~h~~~---V~-~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~ 155 (350)
+.+||+.++..+..+..... .+ -+.|+-+.+++|=- -...+.|+++. .......... ....+....++|
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t-~n~~~~p~~~lr~~gi~dFsisP 183 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEIT-DNIEEHPFKNLRPVGILDFSISP 183 (561)
T ss_pred ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecC-CccccCchhhccccceeeEEecC
Confidence 89999999987777653221 23 57888888776544 33468899862 2221111111 124566777776
Q ss_pred CCC-cEEE-----EEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEE------c------CCcEEEEECC
Q 018784 156 SDQ-TILS-----SCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTA------D------GSSVKFWDAN 216 (350)
Q Consensus 156 ~~~-~~~~-----s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~------~------~~~i~vwd~~ 216 (350)
.++ ..++ ..+.+.++++|.+..++.+.+-.. ...-..+.|.+.|+++..- + ...+.+++++
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 532 2222 235667899998876665444321 1222357788888765431 1 2356777776
Q ss_pred CcceeeeeecCCCCceeEecCCCCcE-EEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCC---C
Q 018784 217 HFGLVKGYNMPCNTESASLEPKLGNI-FIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSED---G 292 (350)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~-l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~D---g 292 (350)
.....-............+.|...+. +++|..+..+.++|++.. .. +...+.+=..+.|+|.+++++.++-| |
T Consensus 264 e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~g 340 (561)
T COG5354 264 ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR--FYFPEQKRNTIFFSPHERYILFAGFDNLQG 340 (561)
T ss_pred ccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eE--EecCCcccccccccCcccEEEEecCCcccc
Confidence 43322111222233345555544333 456678889999998765 32 22333444567788888888776655 5
Q ss_pred cEEEecCCC
Q 018784 293 TIRIWQTNP 301 (350)
Q Consensus 293 ~v~vw~~~~ 301 (350)
.|-+|+...
T Consensus 341 ni~i~~~~~ 349 (561)
T COG5354 341 NIEIFDPAG 349 (561)
T ss_pred ceEEeccCC
Confidence 677887543
No 290
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=1.3e-06 Score=79.26 Aligned_cols=232 Identities=14% Similarity=0.131 Sum_probs=143.9
Q ss_pred EEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeC-----------CCeEEEEECCC
Q 018784 65 WSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF-----------EKILRIFDLNR 133 (350)
Q Consensus 65 ~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~-----------d~~v~vwd~~~ 133 (350)
+-+.|||.|.+|+|- .-..|.+|--..-.....+.|++ |.-+.|||+.++|+|-+. ...++|||+.+
T Consensus 214 tyv~wSP~GTYL~t~-Hk~GI~lWGG~~f~r~~RF~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTF-HKQGIALWGGESFDRIQRFYHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eeEEecCCceEEEEE-eccceeeecCccHHHHHhccCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 347899999999985 45668999887777777788875 899999999999999653 26799999998
Q ss_pred CCCCCeeec--CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec-CCCCeEEEEEecCCcEEEEE----c
Q 018784 134 PDAPPREVG--NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE-TKSPVTSAEVSRDGRYITTA----D 206 (350)
Q Consensus 134 ~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~----~ 206 (350)
+........ .......-+.|++++..++-- .. .+|.|++..+..++-.-. ....|....|+|.+.+|+-= +
T Consensus 292 G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm-~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~ 369 (698)
T KOG2314|consen 292 GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARM-TG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN 369 (698)
T ss_pred cchhcceeccCCCccccceEEeccCCceeEEe-cc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence 765433221 222223345788766544322 22 589999987644332211 13567888899988877632 1
Q ss_pred C--CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEE----------ecCCCeEEEEEcccCeeEEeecCCCcCEE
Q 018784 207 G--SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA----------GGEDMWVHVFDFHTGEQIGCNKGHHGPVH 274 (350)
Q Consensus 207 ~--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s----------g~~d~~i~v~d~~~~~~~~~~~~h~~~v~ 274 (350)
+ ..+.+..+.+.+.+++.++.....+...-...|.+|+. .+.-..+.|+.++..+...........|.
T Consensus 370 ~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi 449 (698)
T KOG2314|consen 370 NIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVI 449 (698)
T ss_pred CCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchhee
Confidence 1 24666666666666655443221111122234555554 22223355566555443333334567889
Q ss_pred EEEEcCCCCEEEEec-C--CCcEEEecCC
Q 018784 275 CVRFSPGGESYASGS-E--DGTIRIWQTN 300 (350)
Q Consensus 275 ~l~~sp~~~~lasgs-~--Dg~v~vw~~~ 300 (350)
..+|-|.|..++.-+ . ..++.+|...
T Consensus 450 ~FaWEP~gdkF~vi~g~~~k~tvsfY~~e 478 (698)
T KOG2314|consen 450 AFAWEPHGDKFAVISGNTVKNTVSFYAVE 478 (698)
T ss_pred eeeeccCCCeEEEEEccccccceeEEEee
Confidence 999999998776433 2 3467777654
No 291
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.79 E-value=1.3e-07 Score=82.40 Aligned_cols=158 Identities=16% Similarity=0.241 Sum_probs=98.6
Q ss_pred EEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee--ecCCCCcEEEEEEeCCCCc--EEEEEeCCCeEEEEECCCCceeE
Q 018784 107 ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE--VGNSSGSIRTVAWLHSDQT--ILSSCTDSGGVRLWDARSGKIVQ 182 (350)
Q Consensus 107 ~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~--~~~s~~~dg~i~iwd~~~~~~~~ 182 (350)
.+..++.++++|.+..+....+++........+. .........++.+...+.. ++...++...+.+|....+.+..
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~ 146 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEP 146 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcch
Confidence 3445677788887777777666666432211111 1111222333444433333 33345566777788777677766
Q ss_pred eecCCCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCC--CceeEecCCCCcEEEEecCCCeEEEEEccc
Q 018784 183 TLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCN--TESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (350)
Q Consensus 183 ~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~ 259 (350)
.+.+-+-++.++++||++++.+++ |..||+-.....-.+.++-+... ...+++. .+..|++||.|+++++||+.+
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--~~~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--DNYLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec--cCceeeecCCCCcEEEEeccc
Confidence 676777889999999999988775 77898866544434444433211 1222332 356789999999999999999
Q ss_pred CeeEEee
Q 018784 260 GEQIGCN 266 (350)
Q Consensus 260 ~~~~~~~ 266 (350)
|+++.++
T Consensus 225 gk~L~t~ 231 (390)
T KOG3914|consen 225 GKLLDTC 231 (390)
T ss_pred CCccccc
Confidence 9877543
No 292
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.79 E-value=4.9e-06 Score=76.79 Aligned_cols=263 Identities=11% Similarity=-0.003 Sum_probs=154.2
Q ss_pred ccEEEEEeCCCCeeEeeCCCCceeeeccCcc--C--------CeE-EEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee
Q 018784 31 GFFLVSASKDSSPMLRNGETGDWIGTFEGHK--G--------AVW-SCCLDANALFSASGSADFTAKLWDALTGDEKHSF 99 (350)
Q Consensus 31 g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~--~--------~V~-~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~ 99 (350)
+..|..++.++.+.-+|.++|+.+...+-.. . .+. .+.. ++..++.++.+|.+..+|..+++.+...
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 3456667788899989999998776543211 0 000 0111 2334455678999999999999988876
Q ss_pred eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCC----cEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784 100 EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSG----SIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (350)
Q Consensus 100 ~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~s~~~dg~i~iwd~ 175 (350)
.-...+.+--.- .+..++.+..++.+..+|..+++........... ...+.... ++. ++.+..++.+...|.
T Consensus 147 ~~~~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~-v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 147 KVAGEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGG-AIVGGDNGRVSAVLM 222 (394)
T ss_pred cCCCceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCE-EEEEcCCCEEEEEEc
Confidence 544433321111 2345667778899999998877654333211100 00011111 233 444567789999999
Q ss_pred CCCceeEeecCCCC--------eEEEEEe---cCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEE
Q 018784 176 RSGKIVQTLETKSP--------VTSAEVS---RDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFI 244 (350)
Q Consensus 176 ~~~~~~~~~~~~~~--------v~~~~~~---~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (350)
.+|+.+.......+ ...+..+ .++.+++++.++.+..+|..+++.+......... ... ..+..+.
T Consensus 223 ~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~---~~~~~vy 298 (394)
T PRK11138 223 EQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGSVN-DFA---VDGGRIY 298 (394)
T ss_pred cCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCCcc-CcE---EECCEEE
Confidence 99987665432111 0011111 2566666777889999999988776554432211 111 1245666
Q ss_pred EecCCCeEEEEEcccCeeEEeecCCC-cCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784 245 AGGEDMWVHVFDFHTGEQIGCNKGHH-GPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHE 305 (350)
Q Consensus 245 sg~~d~~i~v~d~~~~~~~~~~~~h~-~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~ 305 (350)
.++.++.++.+|..+|+.+=....-. ....+... .+..++.++.||.|.+.|..+.+..
T Consensus 299 ~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 299 LVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred EEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 77889999999999987653221111 11111122 2456778899999999988766544
No 293
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=3.6e-09 Score=100.16 Aligned_cols=197 Identities=20% Similarity=0.271 Sum_probs=136.1
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee--CCCeEEEee
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS--ADFTAKLWD 89 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s--~Dg~v~vWd 89 (350)
++.|+..-+|++|+. +-+.|+.|+..|.|+|+++.+|.......+|..+|+-+.-+.+|.++.+.+ ......+|+
T Consensus 1097 frd~~~~fTc~afs~---~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSG---GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hhccccceeeEEeec---CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 478899999999986 667999999999999999999999999999999999998888887655433 334688999
Q ss_pred CC-CCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecC---CCCcEEEEEEeCCCCcEEEEEe
Q 018784 90 AL-TGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN---SSGSIRTVAWLHSDQTILSSCT 165 (350)
Q Consensus 90 ~~-~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~s~~ 165 (350)
.. ++..++++.. -.++.|+...+.-+.|.......+||+.+.......+.. ..-.-....|+|.+..++
T Consensus 1174 ~~s~~~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDE---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---- 1246 (1516)
T ss_pred cccccCccccccc---cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe----
Confidence 74 4455666544 356678776554455555567889999765433222211 111223455666555443
Q ss_pred CCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeee
Q 018784 166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY 224 (350)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 224 (350)
+|| .+||+|..+.++.+..-+--..-.|+|.|.-++..+ .|||+|++++++..
T Consensus 1247 ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS----EIwD~RTF~lLh~V 1299 (1516)
T KOG1832|consen 1247 NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS----EIWDMRTFKLLHSV 1299 (1516)
T ss_pred eCc--eeeeeccHHHHhhhhhheecccccccCCCceEEeec----hhhhhHHHHHHhcC
Confidence 454 479999887776665433223345889887665433 58999998876543
No 294
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.3e-06 Score=76.30 Aligned_cols=253 Identities=15% Similarity=0.134 Sum_probs=150.3
Q ss_pred eeEeeCCCCceeeeccCccCCeEEEEECCCCc-EEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCC-CCeEEEe
Q 018784 43 PMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSED-THLLLTG 120 (350)
Q Consensus 43 v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~-~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~-~~~l~sg 120 (350)
++..+..+.+.+.-+.+|...|+.++|+|... ++..++.+..|+|.|+++......+...+.+++|+|.-+ .++++.|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEe
Confidence 44444444444556678888999999999877 788899999999999999988887776688999999764 5788899
Q ss_pred eCCCeEEEEECCCCCCCCeeecC--CCCcEEEEEEeCCC-----CcEEEEEeCCCeEEEEECCCC----ceeEeecCCCC
Q 018784 121 GFEKILRIFDLNRPDAPPREVGN--SSGSIRTVAWLHSD-----QTILSSCTDSGGVRLWDARSG----KIVQTLETKSP 189 (350)
Q Consensus 121 ~~d~~v~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~-----~~~~~s~~~dg~i~iwd~~~~----~~~~~~~~~~~ 189 (350)
-..|.|.+||+..++.+...... ...+|..++..++. +.+++.... .+..|++.-. -++..+..++.
T Consensus 255 l~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~ 332 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGI 332 (463)
T ss_pred ccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcc
Confidence 99999999999877655433322 23455565554432 223333332 3556665321 23334444556
Q ss_pred eEEEEEecCCc-EEEEEcC----CcEEE----EECCCcceee----ee----ecCCCCceeEecCCCCcE-EEEecCCCe
Q 018784 190 VTSAEVSRDGR-YITTADG----SSVKF----WDANHFGLVK----GY----NMPCNTESASLEPKLGNI-FIAGGEDMW 251 (350)
Q Consensus 190 v~~~~~~~~~~-~l~~~~~----~~i~v----wd~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~-l~sg~~d~~ 251 (350)
+.++...+-.+ ++++..- -.++. -|.+.+-.+- ++ ..+.......+.+.+.++ +..|..-+.
T Consensus 333 cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~ 412 (463)
T KOG1645|consen 333 CISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNE 412 (463)
T ss_pred eeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcce
Confidence 66666655333 3333221 01111 1111111111 11 001111222333333344 445666678
Q ss_pred EEEEEcccCeeEEeecCCCcCEEEEEEcC-CC-CEEEEecCCCcEEEecC
Q 018784 252 VHVFDFHTGEQIGCNKGHHGPVHCVRFSP-GG-ESYASGSEDGTIRIWQT 299 (350)
Q Consensus 252 i~v~d~~~~~~~~~~~~h~~~v~~l~~sp-~~-~~lasgs~Dg~v~vw~~ 299 (350)
+.+||..+++.+.++.-. .+|..++... ++ .+|+. =.|..+.|+..
T Consensus 413 lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~-LTd~~v~Iyk~ 460 (463)
T KOG1645|consen 413 LILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLAL-LTDDRVHIYKN 460 (463)
T ss_pred eEEeccchhheeeecccC-cceeecceeecCCcchhhh-eecceEEEEec
Confidence 999999999888777533 6788777653 23 34543 34557777754
No 295
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.1e-06 Score=76.66 Aligned_cols=241 Identities=17% Similarity=0.166 Sum_probs=139.6
Q ss_pred eeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEEeeC
Q 018784 12 CHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDA 90 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd~ 90 (350)
+.+|...|.+++|+|... .++..+|-+.+|+|.|+++..++.++..| ..+++++|+-+ ..++..|-..|.|-|+|+
T Consensus 189 lp~~g~~IrdlafSp~~~--GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNE--GLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred ccccchhhhhhccCcccc--ceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 478999999999998432 37889999999999999999999999988 89999999865 467889999999999998
Q ss_pred CCCCe-eeeee---ccccEeEEEE------cCCCCeEEEeeCCCeEEEEECCC--CCCCCeeecCCCCcEEEEEEeCCCC
Q 018784 91 LTGDE-KHSFE---HKHIVRACAF------SEDTHLLLTGGFEKILRIFDLNR--PDAPPREVGNSSGSIRTVAWLHSDQ 158 (350)
Q Consensus 91 ~~~~~-~~~~~---h~~~V~~~~~------~~~~~~l~sg~~d~~v~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~ 158 (350)
...+. +..+. ...+|..++. .+.+.+|+..+.+ +..|...- ...+........+...++.+.+..+
T Consensus 266 R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~sn 343 (463)
T KOG1645|consen 266 RQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSN 343 (463)
T ss_pred cCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccc
Confidence 54432 11111 1123333332 3345555544443 34554421 1222223233345566666665556
Q ss_pred cEEEEEeCCC------eEEE-EECCCCceeEeecC---CCC------eEEEEEecCCcEEEEEc--CCcEEEEECCCcce
Q 018784 159 TILSSCTDSG------GVRL-WDARSGKIVQTLET---KSP------VTSAEVSRDGRYITTAD--GSSVKFWDANHFGL 220 (350)
Q Consensus 159 ~~~~s~~~dg------~i~i-wd~~~~~~~~~~~~---~~~------v~~~~~~~~~~~l~~~~--~~~i~vwd~~~~~~ 220 (350)
.++++.-.+. .|.. -|-+.|-++..... .++ -..+.-.++..+++.-. .+.+.+||..++..
T Consensus 344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev 423 (463)
T KOG1645|consen 344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV 423 (463)
T ss_pred eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence 6666543210 1111 12223322221111 010 01111234456665443 36799999999998
Q ss_pred eeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEc
Q 018784 221 VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDF 257 (350)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~ 257 (350)
++++........+.....++.-++..=.|..+++|..
T Consensus 424 vQ~l~~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~ 460 (463)
T KOG1645|consen 424 VQTLALSEPVLDICPNDTNGSSYLALLTDDRVHIYKN 460 (463)
T ss_pred eeecccCcceeecceeecCCcchhhheecceEEEEec
Confidence 8887765433333322223333444445667777754
No 296
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.71 E-value=8.4e-05 Score=63.86 Aligned_cols=215 Identities=16% Similarity=0.138 Sum_probs=132.6
Q ss_pred EEEECC-CCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEc-CCCCeEEEeeCCCeEEEEECCCCCCCCeeec-
Q 018784 66 SCCLDA-NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFS-EDTHLLLTGGFEKILRIFDLNRPDAPPREVG- 142 (350)
Q Consensus 66 ~v~~~~-~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~-~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~- 142 (350)
+.+|.+ ++.++++--..+.|..|+..++.... +.... ...+++. +++.+ +.+...+ +.++|+.+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~g~l-~v~~~~~-~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPDGRL-YVADSGG-IAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTTSEE-EEEETTC-EEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccCCEE-EEEEcCc-eEEEecCCCcEEEEeecc
Confidence 456776 77888887788999999987765433 33333 6777787 66554 4445444 45558776532221111
Q ss_pred --C-CCCcEEEEEEeCCCCcEEEEEeCC--------CeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE--cCCc
Q 018784 143 --N-SSGSIRTVAWLHSDQTILSSCTDS--------GGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA--DGSS 209 (350)
Q Consensus 143 --~-~~~~v~~~~~~~~~~~~~~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~~~ 209 (350)
. .......+++.++ +.+.++.... |.|..++.. ++.......-...+.++|+|+++.|..+ ..+.
T Consensus 80 ~~~~~~~~~ND~~vd~~-G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~ 157 (246)
T PF08450_consen 80 DGGVPFNRPNDVAVDPD-GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR 157 (246)
T ss_dssp TTCSCTEEEEEEEE-TT-S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred CCCcccCCCceEEEcCC-CCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence 1 3455677887654 5566665433 557778877 5544444444557889999999876543 3567
Q ss_pred EEEEECCCcce----eeee-ecCCC---CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEc-C
Q 018784 210 VKFWDANHFGL----VKGY-NMPCN---TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFS-P 280 (350)
Q Consensus 210 i~vwd~~~~~~----~~~~-~~~~~---~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~s-p 280 (350)
|..+++..... .+.+ ..+.. +..+.+.. +++++++....+.|.++|.. |+.+..+......+++++|. |
T Consensus 158 i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~ 235 (246)
T PF08450_consen 158 IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP 235 (246)
T ss_dssp EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence 88888753221 1111 22222 23444544 58899988889999999987 88877776555589999994 5
Q ss_pred CCC-EEEEe
Q 018784 281 GGE-SYASG 288 (350)
Q Consensus 281 ~~~-~lasg 288 (350)
+.. +++|.
T Consensus 236 ~~~~L~vTt 244 (246)
T PF08450_consen 236 DGKTLYVTT 244 (246)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 644 44443
No 297
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.69 E-value=1.8e-07 Score=87.33 Aligned_cols=146 Identities=18% Similarity=0.254 Sum_probs=104.4
Q ss_pred cceeEeeccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCC-ceeeeccCccCCeEEEEECC-CCcEEEEeeCCCe
Q 018784 7 AVPLVCHGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETG-DWIGTFEGHKGAVWSCCLDA-NALFSASGSADFT 84 (350)
Q Consensus 7 ~~~~~~~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~-~~~~~l~gH~~~V~~v~~~~-~~~~l~s~s~Dg~ 84 (350)
++-++++||+..|+++.|+|..|| .||+.+-|-.+..||..+. .++..+..-......|.|+- ++..+| .+....
T Consensus 105 aIef~lhghsraitd~n~~~q~pd--Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla-sshg~~ 181 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQHPD--VLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA-SSHGND 181 (1081)
T ss_pred ceEEEEecCccceeccccCCCCCc--ceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh-hccCCc
Confidence 445678999999999999999998 9999999999999998654 44444443334445678874 455555 477889
Q ss_pred EEEeeCCCCC-eeeee-eccccEeEEEEcCC-CCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeC
Q 018784 85 AKLWDALTGD-EKHSF-EHKHIVRACAFSED-THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLH 155 (350)
Q Consensus 85 v~vWd~~~~~-~~~~~-~h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 155 (350)
|++||...+. ++..+ .|...|+.++|..- -..+.+.+.|++|+.||.++.....+......-.++--.+.|
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~P 255 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLP 255 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccc
Confidence 9999987664 45544 47778888888652 345788999999999998765444443333444454444444
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.68 E-value=9.7e-07 Score=72.83 Aligned_cols=183 Identities=15% Similarity=0.158 Sum_probs=108.1
Q ss_pred ccEEEEEeCCCCeeEeeCCCCc------------eeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee
Q 018784 31 GFFLVSASKDSSPMLRNGETGD------------WIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS 98 (350)
Q Consensus 31 g~~lasgs~d~~v~iw~~~~~~------------~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~ 98 (350)
...|+++-.++.+......++. ..+.+..|+++-.+-+.+.-+.-++++..||.+.+.+... ...
T Consensus 47 ~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~---~~~ 123 (319)
T KOG4714|consen 47 EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDK---DLA 123 (319)
T ss_pred hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechH---HHh
Confidence 4466666666655443333222 2334445555444444444567788999999999998654 111
Q ss_pred eeccccEe-----EEEEcCCCCeEEEee-----CCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784 99 FEHKHIVR-----ACAFSEDTHLLLTGG-----FEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168 (350)
Q Consensus 99 ~~h~~~V~-----~~~~~~~~~~l~sg~-----~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg 168 (350)
+.|+-.+. +..+-..++.+.++. .-+..+.|++...+........ ...|.+++-.|.++.+++.|++||
T Consensus 124 ~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~-~~~v~~l~~hp~qq~~v~cgt~dg 202 (319)
T KOG4714|consen 124 LMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA-LDAVTALCSHPAQQHLVCCGTDDG 202 (319)
T ss_pred hhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc-cccchhhhCCcccccEEEEecCCC
Confidence 11221111 112222344444432 1234556666432222112122 223777776677888999999999
Q ss_pred eEEEEECCCCceeEee-c-CCCCeEEEEEecC--CcEEEEEcCCcEEEEECCC
Q 018784 169 GVRLWDARSGKIVQTL-E-TKSPVTSAEVSRD--GRYITTADGSSVKFWDANH 217 (350)
Q Consensus 169 ~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~--~~~l~~~~~~~i~vwd~~~ 217 (350)
.+-+||.|+......+ . +..++..+.|+|. .++++++.||.+-.||..+
T Consensus 203 ~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 203 IVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred eEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999999987433322 2 4578889999985 3678888999999999864
No 299
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=7.6e-06 Score=74.40 Aligned_cols=266 Identities=19% Similarity=0.243 Sum_probs=150.5
Q ss_pred cCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC-----------CeEEEeeCCCCCe
Q 018784 27 ITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD-----------FTAKLWDALTGDE 95 (350)
Q Consensus 27 ~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D-----------g~v~vWd~~~~~~ 95 (350)
+||-|.||+|=-.-| |.+|-.++...+..|- | ..|.-+.|||..++|+|-|.- ..++|||+.+|..
T Consensus 218 wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l 294 (698)
T KOG2314|consen 218 WSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL 294 (698)
T ss_pred ecCCceEEEEEeccc-eeeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccch
Confidence 445899999876644 6899887766655554 4 456788999999999987543 6789999999987
Q ss_pred eeeeec---cccEe-EEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe------
Q 018784 96 KHSFEH---KHIVR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT------ 165 (350)
Q Consensus 96 ~~~~~h---~~~V~-~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~------ 165 (350)
...+.- ...+. -..||.|++++|.-.. .+|.||+..+..+.-.... .-..|....|+|.+..++.-.-
T Consensus 295 krsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl-ki~gIr~FswsP~~~llAYwtpe~~~~p 372 (698)
T KOG2314|consen 295 KRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL-KISGIRDFSWSPTSNLLAYWTPETNNIP 372 (698)
T ss_pred hcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc-CCccccCcccCCCcceEEEEcccccCCc
Confidence 776643 22233 3578999999986555 5788888654221110000 0111333333332211110000
Q ss_pred ---------CC---C--------------------------------------eEEEEECCCCc-eeEeecCCCCeEEEE
Q 018784 166 ---------DS---G--------------------------------------GVRLWDARSGK-IVQTLETKSPVTSAE 194 (350)
Q Consensus 166 ---------~d---g--------------------------------------~i~iwd~~~~~-~~~~~~~~~~v~~~~ 194 (350)
.- + .+.|+.++... ++..+.....+...+
T Consensus 373 arvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~Fa 452 (698)
T KOG2314|consen 373 ARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFA 452 (698)
T ss_pred ceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeee
Confidence 00 0 11112211110 111112233456667
Q ss_pred EecCCcEEEEE--c--CCcEEEEECCC----cceeeeeecCCCCceeEecCCCCcEEEEec---CCCeEEEEEcccCeeE
Q 018784 195 VSRDGRYITTA--D--GSSVKFWDANH----FGLVKGYNMPCNTESASLEPKLGNIFIAGG---EDMWVHVFDFHTGEQI 263 (350)
Q Consensus 195 ~~~~~~~l~~~--~--~~~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~---~d~~i~v~d~~~~~~~ 263 (350)
|-|.|.-++.- . ..++++|...+ ..+++.+.- .....+.+.|. |+.++++. ..+.+..+|+...+..
T Consensus 453 WEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk-~~~N~vfwsPk-G~fvvva~l~s~~g~l~F~D~~~a~~k 530 (698)
T KOG2314|consen 453 WEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK-KFANTVFWSPK-GRFVVVAALVSRRGDLEFYDTDYADLK 530 (698)
T ss_pred eccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-cccceEEEcCC-CcEEEEEEecccccceEEEecchhhhh
Confidence 88888765443 2 24688888763 223333322 22334555664 66555543 4788999998753333
Q ss_pred EeecCCCcCEEEEEEcCCCCEEEEecC------CCcEEEecC
Q 018784 264 GCNKGHHGPVHCVRFSPGGESYASGSE------DGTIRIWQT 299 (350)
Q Consensus 264 ~~~~~h~~~v~~l~~sp~~~~lasgs~------Dg~v~vw~~ 299 (350)
.+-..-....+.+.|-|.|+|+++++. |.--+||+.
T Consensus 531 ~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 531 DTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred hccCccccccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence 222222334678999999999999886 334456654
No 300
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.67 E-value=1e-07 Score=81.47 Aligned_cols=153 Identities=17% Similarity=0.199 Sum_probs=110.3
Q ss_pred EEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC-----CeeeeeeccccEeEEE
Q 018784 35 VSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG-----DEKHSFEHKHIVRACA 109 (350)
Q Consensus 35 asgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~-----~~~~~~~h~~~V~~~~ 109 (350)
++.+-+-.+-|-|.++|-.- .|. -++.|.++.|...+.++.-|...|.|.+.|+..+ .+.+.+-|...|+++.
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq 305 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQ 305 (425)
T ss_pred ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhh
Confidence 44555566677777665332 233 4466888888888889999999999999998654 3566778999999998
Q ss_pred EcC-CCCeEEEeeCCCeEEEEECCCCCC---CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec
Q 018784 110 FSE-DTHLLLTGGFEKILRIFDLNRPDA---PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE 185 (350)
Q Consensus 110 ~~~-~~~~l~sg~~d~~v~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~ 185 (350)
.-. ++++|++.+.+|+|++||+...+. .....++....-.-.+..++.+..++++++|-..|||.++.|..+.++.
T Consensus 306 ~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 306 ILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 776 788999999999999999875433 2222222222222222334566778889999999999999999998887
Q ss_pred CCCC
Q 018784 186 TKSP 189 (350)
Q Consensus 186 ~~~~ 189 (350)
....
T Consensus 386 f~~s 389 (425)
T KOG2695|consen 386 FPYS 389 (425)
T ss_pred CCCc
Confidence 6543
No 301
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.66 E-value=1.9e-05 Score=73.14 Aligned_cols=191 Identities=11% Similarity=0.106 Sum_probs=112.1
Q ss_pred ccEeEEEEcCCCCe-EEEeeC---CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC--CeEEEEECC
Q 018784 103 HIVRACAFSEDTHL-LLTGGF---EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS--GGVRLWDAR 176 (350)
Q Consensus 103 ~~V~~~~~~~~~~~-l~sg~~---d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d--g~i~iwd~~ 176 (350)
+....-.|+|+|+. ++..+. +..|.++|+.+++. ..+....+......|+|++..++++.+.+ ..|.++|+.
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 36678899999984 554333 35688888875433 22333455566778988777777665544 468888988
Q ss_pred CCceeEeecCCCCeEEEEEecCCcEEEEEcC--C--cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCC---
Q 018784 177 SGKIVQTLETKSPVTSAEVSRDGRYITTADG--S--SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED--- 249 (350)
Q Consensus 177 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d--- 249 (350)
+++...............|+|||+.++-.++ + .|.++|+.++...+-.. .... ...++|+ ++.++..+..
T Consensus 266 ~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~-~~~~SPD-G~~Ia~~~~~~~~ 342 (419)
T PRK04043 266 TKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN-NSSVSTY-KNYIVYSSRETNN 342 (419)
T ss_pred CCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc-CceECCC-CCEEEEEEcCCCc
Confidence 7764332222222345679999986654332 2 68888887765433221 1111 2356654 5555444332
Q ss_pred ------CeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecC-CCc--EEEecCC
Q 018784 250 ------MWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSE-DGT--IRIWQTN 300 (350)
Q Consensus 250 ------~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~-Dg~--v~vw~~~ 300 (350)
..|.+.|+.+++.. .+... .......|+|||+.++-.+. .+. +.+.+++
T Consensus 343 ~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 343 EFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred ccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 36888898877643 33322 22345889999998764443 333 4455543
No 302
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=2.8e-05 Score=70.83 Aligned_cols=233 Identities=16% Similarity=0.172 Sum_probs=138.9
Q ss_pred cCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEe-----eCC-----CeEEEEE
Q 018784 61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG-----GFE-----KILRIFD 130 (350)
Q Consensus 61 ~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg-----~~d-----~~v~vwd 130 (350)
...++..+++++|+++|- +.+..++|++..+...+.+.... .++.+.|+|-+++|.|- ..+ -.+++|+
T Consensus 34 ~~~~~v~~~S~~G~lfA~-~~~~~v~i~~~~~~~~~lt~~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAY-SDNQVVKVFEIATLKVVLCVELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CCcceeEEEcCCCcEEEE-EcCCeEEEEEccCCcEEEEeccc-eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 344667788999998775 67889999999888655555444 78999999999998762 222 3467999
Q ss_pred CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCC--cEEEEE---
Q 018784 131 LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDG--RYITTA--- 205 (350)
Q Consensus 131 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~--- 205 (350)
+++. .....+......-++..|+.++...+- --.+.+.+|++.+.+....--+...++...++|.+ ..+++-
T Consensus 112 vet~-~~~s~~q~k~Q~~W~~qfs~dEsl~ar--lv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe 188 (566)
T KOG2315|consen 112 VETG-VQRSQIQKKMQNGWVPQFSIDESLAAR--LVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPE 188 (566)
T ss_pred eccc-eehhheehhhhcCcccccccchhhhhh--hhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccC
Confidence 8873 322222211111146667654432211 12257999999876554444445678888888753 344432
Q ss_pred cC---CcEEEEECCCccee-----eeeecCCCCceeEecCCCCcEEEEecC-----------CCeEEEEEcccCeeEEee
Q 018784 206 DG---SSVKFWDANHFGLV-----KGYNMPCNTESASLEPKLGNIFIAGGE-----------DMWVHVFDFHTGEQIGCN 266 (350)
Q Consensus 206 ~~---~~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~sg~~-----------d~~i~v~d~~~~~~~~~~ 266 (350)
.+ ..||+|-..-...- +++ +........++.....+|+..+. +.+++++++. |+....-
T Consensus 189 ~kGaPa~vri~~~~~~~~~~~~a~ksF-Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~ 266 (566)
T KOG2315|consen 189 KKGAPASVRIYKYPEEGQHQPVANKSF-FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVP 266 (566)
T ss_pred CCCCCcEEEEeccccccccchhhhccc-cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEe
Confidence 23 36899876411110 111 11122223333332334443332 3468888877 4333332
Q ss_pred cCCCcCEEEEEEcCCCCEEEE--ecCCCcEEEecCC
Q 018784 267 KGHHGPVHCVRFSPGGESYAS--GSEDGTIRIWQTN 300 (350)
Q Consensus 267 ~~h~~~v~~l~~sp~~~~las--gs~Dg~v~vw~~~ 300 (350)
-.-.++|+++.|+|+++-++. |=--..+-|+|++
T Consensus 267 L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr 302 (566)
T KOG2315|consen 267 LLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR 302 (566)
T ss_pred cCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC
Confidence 234789999999999976543 4456678888875
No 303
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.63 E-value=6.2e-05 Score=69.72 Aligned_cols=190 Identities=13% Similarity=0.060 Sum_probs=111.5
Q ss_pred CeEEEEECCCCcE-EEEeeC---CCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEE-eeC--CCeEEEEECCCCC
Q 018784 63 AVWSCCLDANALF-SASGSA---DFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLT-GGF--EKILRIFDLNRPD 135 (350)
Q Consensus 63 ~V~~v~~~~~~~~-l~s~s~---Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~s-g~~--d~~v~vwd~~~~~ 135 (350)
.+....|+|+++. ++-.+. +..|.++|+.+++........+......|+|||+.++- .+. +..|.++|+..+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 6677899999973 543333 45688889988876555555566667889999987654 333 3557777876543
Q ss_pred CCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC--eEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE-cC-----
Q 018784 136 APPREVGNSSGSIRTVAWLHSDQTILSSCTDSG--GVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA-DG----- 207 (350)
Q Consensus 136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg--~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~----- 207 (350)
. ..+..+.+......|+|++..++.+....+ .|.+.|+.+++.......... ...|+|+|++++.. ..
T Consensus 269 ~--~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 269 L--TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--NSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred E--EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--CceECCCCCEEEEEEcCCCccc
Confidence 2 222223333345578888777777765444 577888887765332222111 24899999987543 21
Q ss_pred ----CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecC-CC--eEEEEEcc
Q 018784 208 ----SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGE-DM--WVHVFDFH 258 (350)
Q Consensus 208 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-d~--~i~v~d~~ 258 (350)
..|.+.|+.+.... .++.........+.|+ ++.++..+. .+ .+.+.++.
T Consensus 345 ~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPD-G~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSD-GGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCC-CCEEEEEEccCCcEEEEEEecC
Confidence 25777887765432 2222222234556654 554444332 22 24445553
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.60 E-value=5e-05 Score=63.96 Aligned_cols=197 Identities=14% Similarity=0.197 Sum_probs=122.2
Q ss_pred CCccEEEEEeCCCCeeEeeCCCC--ceeeec---cCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee---
Q 018784 29 PDGFFLVSASKDSSPMLRNGETG--DWIGTF---EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--- 100 (350)
Q Consensus 29 ~dg~~lasgs~d~~v~iw~~~~~--~~~~~l---~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~--- 100 (350)
.+|++||. -.|..|.|....+. ..+... +.-...=+-++|+||+.+||-+...|+|+++|+.. .....+.
T Consensus 7 ~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~ 84 (282)
T PF15492_consen 7 SDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAM 84 (282)
T ss_pred CCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCccc
Confidence 48988875 67788888876542 122222 22223347889999999999999999999999864 3333332
Q ss_pred -----ccccEeEEEEcCC------CCeEEEeeCCCeEEEEECCCCCCC----C--e-eecCCCCcEEEEEEeCCCCcEEE
Q 018784 101 -----HKHIVRACAFSED------THLLLTGGFEKILRIFDLNRPDAP----P--R-EVGNSSGSIRTVAWLHSDQTILS 162 (350)
Q Consensus 101 -----h~~~V~~~~~~~~------~~~l~sg~~d~~v~vwd~~~~~~~----~--~-~~~~~~~~v~~~~~~~~~~~~~~ 162 (350)
-...|..+.|-+. ...|++-..+|.++-|-+..++.. . . ........|.++.|.+..+.+++
T Consensus 85 ~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlV 164 (282)
T PF15492_consen 85 SFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLV 164 (282)
T ss_pred ccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEE
Confidence 2345667767432 235667778888888865321111 1 1 11223556888887765555555
Q ss_pred EEeCCC----------eEEEEECCCCceeEe------------------------------ecCCCCeEEEEEecCCcEE
Q 018784 163 SCTDSG----------GVRLWDARSGKIVQT------------------------------LETKSPVTSAEVSRDGRYI 202 (350)
Q Consensus 163 s~~~dg----------~i~iwd~~~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~l 202 (350)
+|.... -+..|.+-++.+-.. .+....|..+.++|||++|
T Consensus 165 gG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~L 244 (282)
T PF15492_consen 165 GGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLL 244 (282)
T ss_pred eccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEE
Confidence 543322 355665433221000 0123468889999999998
Q ss_pred EEE-cCCcEEEEECCCcceeeeeecC
Q 018784 203 TTA-DGSSVKFWDANHFGLVKGYNMP 227 (350)
Q Consensus 203 ~~~-~~~~i~vwd~~~~~~~~~~~~~ 227 (350)
++. ..|.|.+|++...++.+.....
T Consensus 245 a~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 245 ACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EEEEcCCeEEEEecCcchhhcccchh
Confidence 765 5899999999887766655443
No 305
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.60 E-value=2.1e-07 Score=79.55 Aligned_cols=150 Identities=21% Similarity=0.262 Sum_probs=106.3
Q ss_pred EEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCC---CCCeeecCCCCcEEEEEE
Q 018784 77 ASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD---APPREVGNSSGSIRTVAW 153 (350)
Q Consensus 77 ~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~---~~~~~~~~~~~~v~~~~~ 153 (350)
++.|.+..|-+-|++++-.. .+.-++.|.++.|+..++++..|..+|.|.++|+.... .......-|...|+++..
T Consensus 228 fs~G~sqqv~L~nvetg~~q-sf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQ-SFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeeccccc-ccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence 66777888888888877543 33466779999999999999999999999999997542 122233446777888876
Q ss_pred eCCCCcEEEEEeCCCeEEEEECCCCce---eEeecCCC---CeEEEEEec-CCcEEEEEcCCcEEEEECCCcceeeeeec
Q 018784 154 LHSDQTILSSCTDSGGVRLWDARSGKI---VQTLETKS---PVTSAEVSR-DGRYITTADGSSVKFWDANHFGLVKGYNM 226 (350)
Q Consensus 154 ~~~~~~~~~s~~~dg~i~iwd~~~~~~---~~~~~~~~---~v~~~~~~~-~~~~l~~~~~~~i~vwd~~~~~~~~~~~~ 226 (350)
...++..+.+.+.+|+|++||.|.-++ +.+...|. .-.-+.+.+ +|.++++++|...|+|.++.+.+..+..+
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence 663444555567889999999998776 66665542 111122344 44556677888999999998887776655
Q ss_pred C
Q 018784 227 P 227 (350)
Q Consensus 227 ~ 227 (350)
+
T Consensus 387 ~ 387 (425)
T KOG2695|consen 387 P 387 (425)
T ss_pred C
Confidence 4
No 306
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.56 E-value=3.7e-06 Score=80.58 Aligned_cols=181 Identities=17% Similarity=0.264 Sum_probs=131.0
Q ss_pred CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEE
Q 018784 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTS 192 (350)
Q Consensus 113 ~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~ 192 (350)
++..++.|+-...+..+|+.+.......-.. .+.+.-+. ..++++..|...|+|.+-|.++.+.++++..++...
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~-a~~v~imR---~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si- 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS-ASGVTIMR---YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI- 220 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeecc-CCceEEEE---ecCcEEEeecccceEEeecCCcCceeeeeeccccce-
Confidence 3456777888888888898764433222111 21244443 356778888888999999999999999999775432
Q ss_pred EEEecCCcEEEE-E---------cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEc---cc
Q 018784 193 AEVSRDGRYITT-A---------DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDF---HT 259 (350)
Q Consensus 193 ~~~~~~~~~l~~-~---------~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~---~~ 259 (350)
.+|+-.|++|++ + -|.-|+|||+|..+.+..+.++..+..+.+.|.....+++.++-|...+-|. .+
T Consensus 221 SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN 300 (1118)
T KOG1275|consen 221 SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN 300 (1118)
T ss_pred eeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCC
Confidence 245555665544 3 1456899999998888777777777778888888888999999999999994 33
Q ss_pred Ce-eEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784 260 GE-QIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 260 ~~-~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~ 298 (350)
.. ...........+..+++|++++.||-|-.+|.|.+|.
T Consensus 301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 21 1222223344589999999999999999999999997
No 307
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1e-06 Score=77.95 Aligned_cols=216 Identities=18% Similarity=0.181 Sum_probs=139.8
Q ss_pred ccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee----eeeccccEeEEEEcCCCCeEEEeeC-CCeEEEEECCCC
Q 018784 60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH----SFEHKHIVRACAFSEDTHLLLTGGF-EKILRIFDLNRP 134 (350)
Q Consensus 60 H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~----~~~h~~~V~~~~~~~~~~~l~sg~~-d~~v~vwd~~~~ 134 (350)
|.+.|+.+.. ....++.+++.||.++.|....-.... ...|...+.+++.+.++.++.|++. |..+|++|+++.
T Consensus 8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 7777766554 346788999999999999865423222 2347778889999999999999888 999999999765
Q ss_pred CCCCeeecCCCCcEEEEEEeCCCC----cEEEEEeCCCeEEEEECCCCce-eE-e-ecCCCCeEEEEEecCCcEEEEEc-
Q 018784 135 DAPPREVGNSSGSIRTVAWLHSDQ----TILSSCTDSGGVRLWDARSGKI-VQ-T-LETKSPVTSAEVSRDGRYITTAD- 206 (350)
Q Consensus 135 ~~~~~~~~~~~~~v~~~~~~~~~~----~~~~s~~~dg~i~iwd~~~~~~-~~-~-~~~~~~v~~~~~~~~~~~l~~~~- 206 (350)
........ ..-...+.|....+ .+.++.-+++.+.++|-+..-+ .. . -.+-++|..+.+.+-+..+++.+
T Consensus 87 DminmiKL--~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~ 164 (558)
T KOG0882|consen 87 DMINMIKL--VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI 164 (558)
T ss_pred chhhhccc--ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence 54321111 01111233333333 5667777889999999765432 11 1 12457888888888887776665
Q ss_pred CCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEE
Q 018784 207 GSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYA 286 (350)
Q Consensus 207 ~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~la 286 (350)
.|-|..|.... .+..+... . .|.+....-+..+.--.....++.|+|++..++
T Consensus 165 ~gmVEyWs~e~-----~~qfPr~~--l--------------------~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qis 217 (558)
T KOG0882|consen 165 SGMVEYWSAEG-----PFQFPRTN--L--------------------NFELKHETDLYGFPKAKTEPTSFEFSPDGAQIS 217 (558)
T ss_pred cceeEeecCCC-----cccCcccc--c--------------------cccccccchhhcccccccCccceEEccccCccc
Confidence 67899998652 11111100 0 122221111111222344568899999999999
Q ss_pred EecCCCcEEEecCCCCCcc
Q 018784 287 SGSEDGTIRIWQTNPPNHE 305 (350)
Q Consensus 287 sgs~Dg~v~vw~~~~~~~~ 305 (350)
+-+.|..|++++....+..
T Consensus 218 tl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 218 TLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred ccCcccEEEEEEeccchhh
Confidence 9999999999998765544
No 308
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=3e-06 Score=79.13 Aligned_cols=228 Identities=13% Similarity=0.136 Sum_probs=144.3
Q ss_pred CCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCe---------eee------e-eccccEeEEEEcCCCCeEEEeeCCCe
Q 018784 62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDE---------KHS------F-EHKHIVRACAFSEDTHLLLTGGFEKI 125 (350)
Q Consensus 62 ~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~---------~~~------~-~h~~~V~~~~~~~~~~~l~sg~~d~~ 125 (350)
....++.|.....++|.||.||.++|..+.+... ... + .|+..|.-+.|+.+.+.|-|...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 3457899999999999999999999998754321 011 1 38999999999999999999999999
Q ss_pred EEEEECCCCCCCCeee-cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEE-
Q 018784 126 LRIFDLNRPDAPPREV-GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT- 203 (350)
Q Consensus 126 v~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~- 203 (350)
|.+|-+-++....... ...+..|.+++|..++.++.+ ...||.|.+=.+...+....--.......+.|++|.+.+.
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcI-vYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf 173 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICI-VYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALF 173 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEE-EEccCCEEEEeeccceecchhcchheccceeecccHHHHHh
Confidence 9999987654322211 123456889999876655544 4677877765554332211111112234677899877653
Q ss_pred EEcCCcEEEEECCCc-c------e-eeee----ecCCCCceeE-------ecCCCCcEEEEecCCCeEEEEEcc-cCeeE
Q 018784 204 TADGSSVKFWDANHF-G------L-VKGY----NMPCNTESAS-------LEPKLGNIFIAGGEDMWVHVFDFH-TGEQI 263 (350)
Q Consensus 204 ~~~~~~i~vwd~~~~-~------~-~~~~----~~~~~~~~~~-------~~~~~~~~l~sg~~d~~i~v~d~~-~~~~~ 263 (350)
.-.++.+.+||.... . + +... +.+.....+. ..+++...|+++...|.+.+-.-. +..++
T Consensus 174 ~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv 253 (1189)
T KOG2041|consen 174 KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV 253 (1189)
T ss_pred hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe
Confidence 345678899986431 1 0 1100 0011111111 123456678888888887765432 22333
Q ss_pred EeecCCCcCEEEEEEcCCCCEEEEecCCC
Q 018784 264 GCNKGHHGPVHCVRFSPGGESYASGSEDG 292 (350)
Q Consensus 264 ~~~~~h~~~v~~l~~sp~~~~lasgs~Dg 292 (350)
..-.+ -.|..+.|+++|.+||.++.|.
T Consensus 254 v~dtg--m~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 254 VVDTG--MKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred EEecc--cEeecceecCCCcEEEEccCcc
Confidence 22222 3578899999999999988763
No 309
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.53 E-value=2.9e-05 Score=73.42 Aligned_cols=204 Identities=15% Similarity=0.181 Sum_probs=130.6
Q ss_pred eccCCceeEEEecc-------cCCC--ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECC---CC-cEEEEe
Q 018784 13 HGHSRPVVDLFYSP-------ITPD--GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDA---NA-LFSASG 79 (350)
Q Consensus 13 ~gH~~~v~~~~~~~-------~s~d--g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~---~~-~~l~s~ 79 (350)
--|...|..|.|.| .+|. --++|++.-.|.|.+||...+.....|+.|.++|.-++|-+ +. .+|+.-
T Consensus 52 e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaI 131 (1062)
T KOG1912|consen 52 ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAI 131 (1062)
T ss_pred ccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEe
Confidence 45888999999866 2322 23667888889999999998888888999999999888843 34 456666
Q ss_pred eCCCeEEEeeCCCCCeeeeeecc-ccEeEEEEcC-CCCeEEEeeCCCeEEEEECCC---CCCCCee--e-cCCCC-----
Q 018784 80 SADFTAKLWDALTGDEKHSFEHK-HIVRACAFSE-DTHLLLTGGFEKILRIFDLNR---PDAPPRE--V-GNSSG----- 146 (350)
Q Consensus 80 s~Dg~v~vWd~~~~~~~~~~~h~-~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~---~~~~~~~--~-~~~~~----- 146 (350)
..-.++.+|+..+|.....+.-. ....|+.+.| +...+..-+..|.+.+-+.-. +..+.+. + ..|..
T Consensus 132 h~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~le 211 (1062)
T KOG1912|consen 132 HGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLE 211 (1062)
T ss_pred cCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhh
Confidence 66789999999999887766433 3345578887 445555555566666665421 1111111 1 11110
Q ss_pred -------c-------------EEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC-CCCeEEEEEecCCc--EE-
Q 018784 147 -------S-------------IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGR--YI- 202 (350)
Q Consensus 147 -------~-------------v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~--~l- 202 (350)
. ...++|+|.-.+++... ..+.+.++|++-..++....- .+.+.-+.+-|+++ .|
T Consensus 212 re~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lf 290 (1062)
T KOG1912|consen 212 RETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALF 290 (1062)
T ss_pred hhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEE
Confidence 0 01124455444444433 346899999988777766654 34556677777654 34
Q ss_pred EEEcCCcEEEEECCC
Q 018784 203 TTADGSSVKFWDANH 217 (350)
Q Consensus 203 ~~~~~~~i~vwd~~~ 217 (350)
+.-.+|.+.+|--+.
T Consensus 291 clH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 291 CLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEecCCeEEEEEeec
Confidence 445688888886544
No 310
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.50 E-value=0.00013 Score=73.91 Aligned_cols=276 Identities=15% Similarity=0.148 Sum_probs=152.6
Q ss_pred ceeEEEecccCCCccEEEEEeCCC--CeeEeeCCCC---ceeeecc-----CccCCeEEEEECCCCcEEEEeeCCCeEEE
Q 018784 18 PVVDLFYSPITPDGFFLVSASKDS--SPMLRNGETG---DWIGTFE-----GHKGAVWSCCLDANALFSASGSADFTAKL 87 (350)
Q Consensus 18 ~v~~~~~~~~s~dg~~lasgs~d~--~v~iw~~~~~---~~~~~l~-----gH~~~V~~v~~~~~~~~l~s~s~Dg~v~v 87 (350)
.+...+|.+. .|.-+++.++... .+.+...... +.+..+. ...+.|.++.+-++...++-+..+|.|.+
T Consensus 23 ~~~~~~~d~~-sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~ 101 (928)
T PF04762_consen 23 PITATAFDSD-SDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL 101 (928)
T ss_pred ccceEEEecC-CCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence 5666777652 2445566665555 2344332221 2333443 23467888888888888888889999999
Q ss_pred e----eCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee----ecCCCCcEEEEEEeCCCCc
Q 018784 88 W----DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE----VGNSSGSIRTVAWLHSDQT 159 (350)
Q Consensus 88 W----d~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~ 159 (350)
. +..+......-.-...|.+++||||..+|+....++++-+..-. .+..... .........++.|-.....
T Consensus 102 ~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQ 180 (928)
T PF04762_consen 102 VREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQ 180 (928)
T ss_pred EEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCc
Confidence 9 65554433333456789999999999999999888888776421 1111100 0011122334444322111
Q ss_pred EEEEEeCCCeEEEEECCCC-ceeEeecCCCCeEEEEEecCCcEEEEEc-----C--CcEEEEECCCcceeeeeecC--CC
Q 018784 160 ILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITTAD-----G--SSVKFWDANHFGLVKGYNMP--CN 229 (350)
Q Consensus 160 ~~~s~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~--~~i~vwd~~~~~~~~~~~~~--~~ 229 (350)
+=-+++.--.=.+=|.... .....+.....-..++|-.||.|++++. + +.+|||+-. +. +....-+ ..
T Consensus 181 F~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~-L~stSE~v~gL 258 (928)
T PF04762_consen 181 FHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE-LQSTSEPVDGL 258 (928)
T ss_pred cCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce-EEeccccCCCc
Confidence 1000000000000010000 0001111223456789999999987652 3 579999865 22 2221112 22
Q ss_pred CceeEecCCCCcEEEEecC---CCeEEEEEcccCeeEEee--c--CCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 230 TESASLEPKLGNIFIAGGE---DMWVHVFDFHTGEQIGCN--K--GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 230 ~~~~~~~~~~~~~l~sg~~---d~~i~v~d~~~~~~~~~~--~--~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
...+++.| .|+++++... ...|.+|. ++|-....+ . .....|..|.|++++..||.--.|. |.+|...
T Consensus 259 e~~l~WrP-sG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~ 333 (928)
T PF04762_consen 259 EGALSWRP-SGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRS 333 (928)
T ss_pred cCCccCCC-CCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEee
Confidence 34556666 4777776554 23455554 344433322 2 3456799999999999999877665 9999754
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.46 E-value=0.00046 Score=59.80 Aligned_cols=222 Identities=18% Similarity=0.133 Sum_probs=133.6
Q ss_pred EEEECC-CCcEEEEeeCCCe-EEEeeCCCCCeeeeeeccc---cEeEEEEcCCCCeEEEee-----CCCeEEEEECCCCC
Q 018784 66 SCCLDA-NALFSASGSADFT-AKLWDALTGDEKHSFEHKH---IVRACAFSEDTHLLLTGG-----FEKILRIFDLNRPD 135 (350)
Q Consensus 66 ~v~~~~-~~~~l~s~s~Dg~-v~vWd~~~~~~~~~~~h~~---~V~~~~~~~~~~~l~sg~-----~d~~v~vwd~~~~~ 135 (350)
.++.+| ++..++-+-.-|+ ..+||..+++....+.-.. .--.-.|+++|++|++.- ..|.|-|||.....
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 456666 5566666766665 5678988888766553211 122457999999999863 45889999998443
Q ss_pred CCCeeecCCCCcEEEEEEeCCCCcEEEEE-----------------eCCCeEEEEECCCCceeEeec-----CCCCeEEE
Q 018784 136 APPREVGNSSGSIRTVAWLHSDQTILSSC-----------------TDSGGVRLWDARSGKIVQTLE-----TKSPVTSA 193 (350)
Q Consensus 136 ~~~~~~~~~~~~v~~~~~~~~~~~~~~s~-----------------~~dg~i~iwd~~~~~~~~~~~-----~~~~v~~~ 193 (350)
....+...+.--...+.+.+++..+++.. ..+-.+-+-|.++|+.+.+.. ++.++..+
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeE
Confidence 33333333333334555665554554442 234467777888888776643 23578999
Q ss_pred EEecCCcEEEEEcC-C-------cEEEEECCCcceeeeeecC--------CCCceeEecCCCCcEEEEecCCCeEEEEEc
Q 018784 194 EVSRDGRYITTADG-S-------SVKFWDANHFGLVKGYNMP--------CNTESASLEPKLGNIFIAGGEDMWVHVFDF 257 (350)
Q Consensus 194 ~~~~~~~~l~~~~~-~-------~i~vwd~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~ 257 (350)
++.++|..+.+... + -+-+++... .+..+..+ ...-++.+....+.+.+++-..+.+.+||.
T Consensus 169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~ 246 (305)
T PF07433_consen 169 AVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDA 246 (305)
T ss_pred EecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEEC
Confidence 99999987766421 1 133443322 12222221 223345555443345566667889999999
Q ss_pred ccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCC
Q 018784 258 HTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292 (350)
Q Consensus 258 ~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg 292 (350)
.+++.+....-. -+..++-.+++ +++|.+.-.
T Consensus 247 ~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 247 ATGRLLGSVPLP--DACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred CCCCEeeccccC--ceeeeeecCCc-eEEeCCCcc
Confidence 999987544322 25667776666 777766544
No 312
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.44 E-value=0.00081 Score=57.73 Aligned_cols=207 Identities=13% Similarity=0.117 Sum_probs=129.8
Q ss_pred CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEEC-CCCcEEEEeeCCCeEEEeeCCCCCeeeeee------cc
Q 018784 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLD-ANALFSASGSADFTAKLWDALTGDEKHSFE------HK 102 (350)
Q Consensus 30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~-~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~------h~ 102 (350)
++.++.+--..+.|..|+..+++... +.... ...+++. +++.++++. . +.+.++|..+++...... ..
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~-~-~~~~~~d~~~g~~~~~~~~~~~~~~~ 85 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVAD-S-GGIAVVDPDTGKVTVLADLPDGGVPF 85 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEE-T-TCEEEEETTTTEEEEEEEEETTCSCT
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEE-c-CceEEEecCCCcEEEEeeccCCCccc
Confidence 67888888888999999988876643 22211 5566776 677776654 3 444555988875444332 23
Q ss_pred ccEeEEEEcCCCCeEEEeeCC--------CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEE
Q 018784 103 HIVRACAFSEDTHLLLTGGFE--------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWD 174 (350)
Q Consensus 103 ~~V~~~~~~~~~~~l~sg~~d--------~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd 174 (350)
...+.+++.|+|.+.++.... +.|..++.. .+ .......-.....++|++++..++++-+..+.|..++
T Consensus 86 ~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~ 162 (246)
T PF08450_consen 86 NRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFD 162 (246)
T ss_dssp EEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEE
T ss_pred CCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce--EEEEecCcccccceEECCcchheeecccccceeEEEe
Confidence 457899999999977765543 446666654 22 2222223445678999987777888888888999998
Q ss_pred CCCC-c------eeEeecCC-CCeEEEEEecCCcEEEEE-cCCcEEEEECCCcceeeeeecC-CCCceeEecC-CCCcEE
Q 018784 175 ARSG-K------IVQTLETK-SPVTSAEVSRDGRYITTA-DGSSVKFWDANHFGLVKGYNMP-CNTESASLEP-KLGNIF 243 (350)
Q Consensus 175 ~~~~-~------~~~~~~~~-~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l 243 (350)
+... . .+..+... .....+++..+|++.++. ..+.|.++|.. ++.+..+..+ ..+..+.|-. ....++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 163 LDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp EETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred ccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence 8532 2 12222222 236789999999887765 56789999988 7777777777 3344455532 223444
Q ss_pred EE
Q 018784 244 IA 245 (350)
Q Consensus 244 ~s 245 (350)
++
T Consensus 242 vT 243 (246)
T PF08450_consen 242 VT 243 (246)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 313
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=3.1e-07 Score=87.44 Aligned_cols=198 Identities=18% Similarity=0.202 Sum_probs=131.8
Q ss_pred CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeC-CC-eEE
Q 018784 51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGF-EK-ILR 127 (350)
Q Consensus 51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~-d~-~v~ 127 (350)
.+..++|..|...-+|++|+.+..+|+.|+.-|.|+++++.+|.....+ .|...|+-+.-+.+|..+++.+. .. -..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence 3445678889999999999999999999999999999999999866655 59999999998889987766543 33 467
Q ss_pred EEECCCCCCCCeeecCCCCcEEEEEEeCCCC-cEEEEEeCCCeEEEEECCCCceeEeecC-----CCCeEEEEEecCCcE
Q 018784 128 IFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ-TILSSCTDSGGVRLWDARSGKIVQTLET-----KSPVTSAEVSRDGRY 201 (350)
Q Consensus 128 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~s~~~dg~i~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~ 201 (350)
+|++.....+. +.-..-.++.|+...+ +.+-++. ....+||+.++..+.++-. ...-+...|+|+.++
T Consensus 1171 LW~~~s~~~~~----Hsf~ed~~vkFsn~~q~r~~gt~~--d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1171 LWDASSTGGPR----HSFDEDKAVKFSNSLQFRALGTEA--DDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HhccccccCcc----ccccccceeehhhhHHHHHhcccc--cceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 99986532221 1122234566664433 3333433 3689999999877666322 122355678998877
Q ss_pred EEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE
Q 018784 202 ITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG 264 (350)
Q Consensus 202 l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~ 264 (350)
+. .|| .+||.|...-++.+..-.....-.|+|. |..++..+ .|||+++.++++
T Consensus 1245 Il--ndG--vLWDvR~~~aIh~FD~ft~~~~G~FHP~-g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1245 IL--NDG--VLWDVRIPEAIHRFDQFTDYGGGGFHPS-GNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred Ee--eCc--eeeeeccHHHHhhhhhheecccccccCC-CceEEeec-----hhhhhHHHHHHh
Confidence 64 233 5799988766655433222233345553 44444443 489998877654
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00016 Score=69.43 Aligned_cols=194 Identities=15% Similarity=0.138 Sum_probs=126.6
Q ss_pred CCccEEEEEeCCCCeeEeeCCCCceeeeccCccCC-eEEEEECCCCcEEEEeeCCC-----eEEEeeCCCC---C---ee
Q 018784 29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGA-VWSCCLDANALFSASGSADF-----TAKLWDALTG---D---EK 96 (350)
Q Consensus 29 ~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~-V~~v~~~~~~~~l~s~s~Dg-----~v~vWd~~~~---~---~~ 96 (350)
+.+..+|-|+.||.|.+.+ ...+.++.+..|..+ |..+-...+-.+|++-+.|+ .++||+++.. . +.
T Consensus 33 s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~ 111 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCL 111 (933)
T ss_pred CCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCccee
Confidence 4677899999999998876 344555788888877 44333334446888877774 5999998533 1 22
Q ss_pred ---eeeec-----cccEeEEEEcCCCCeEEEeeCCCeEEEEECC---CCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe
Q 018784 97 ---HSFEH-----KHIVRACAFSEDTHLLLTGGFEKILRIFDLN---RPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (350)
Q Consensus 97 ---~~~~h-----~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 165 (350)
..+.+ +.++.+++.+.+-+.+|+|-.+|.|..+.-+ ..............+|+.+++..+....+..+.
T Consensus 112 ~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T 191 (933)
T KOG2114|consen 112 YEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT 191 (933)
T ss_pred eeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe
Confidence 11222 3457889999999999999999999998532 112223344456788999998876666333333
Q ss_pred CCCeEEEEECCCCcee-EeecCC-CCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeee
Q 018784 166 DSGGVRLWDARSGKIV-QTLETK-SPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY 224 (350)
Q Consensus 166 ~dg~i~iwd~~~~~~~-~~~~~~-~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 224 (350)
. ..|.+|.+....+. ..+..+ .+.++..+++....+.++.+.-+.+||....++-..+
T Consensus 192 t-~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 192 T-EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred c-ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCcceeeee
Confidence 3 47999998733322 224433 4566666666555466666678999998755544333
No 315
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.31 E-value=0.00045 Score=65.57 Aligned_cols=231 Identities=14% Similarity=0.098 Sum_probs=132.9
Q ss_pred cEEEEEeCCCCeeEeeCCCCceeeeccCccCC-----eE-EEEECCCCcEEEEe--------eCCCeEEEeeCCCCCeee
Q 018784 32 FFLVSASKDSSPMLRNGETGDWIGTFEGHKGA-----VW-SCCLDANALFSASG--------SADFTAKLWDALTGDEKH 97 (350)
Q Consensus 32 ~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~-----V~-~v~~~~~~~~l~s~--------s~Dg~v~vWd~~~~~~~~ 97 (350)
..+..++.|+.+.-+|.++|+.+..++..... +. +..+. ++.+++.. +.+|.+...|..+++.+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 56777888999999999999988765432210 11 11111 23443322 246889999999999887
Q ss_pred eeecc-c--------------------cE-eEEEEcCCCCeEEEeeCCC------------------eEEEEECCCCCCC
Q 018784 98 SFEHK-H--------------------IV-RACAFSEDTHLLLTGGFEK------------------ILRIFDLNRPDAP 137 (350)
Q Consensus 98 ~~~h~-~--------------------~V-~~~~~~~~~~~l~sg~~d~------------------~v~vwd~~~~~~~ 137 (350)
.+... . .| .+.++.+.+..++.++.++ .+.-+|+.+++..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 76421 1 01 1233444556677776554 6777787776654
Q ss_pred Ceeec-CCCCc---E-EEEEEe---CCCC---cEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEE--
Q 018784 138 PREVG-NSSGS---I-RTVAWL---HSDQ---TILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITT-- 204 (350)
Q Consensus 138 ~~~~~-~~~~~---v-~~~~~~---~~~~---~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-- 204 (350)
..... .+... . ...... .-++ .+++.++.+|.+...|.++|+.+....... ..+..+| +.+++.
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~-~~vyv~~~ 346 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP-GLVYLGAF 346 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC-ceEEEccc
Confidence 43221 11100 0 000000 0111 256677788999999999999887654320 1122233 222221
Q ss_pred ----------------EcCCcEEEEECCCcceeeeeecCCC---------CceeEecCCCCcEEEEecCCCeEEEEEccc
Q 018784 205 ----------------ADGSSVKFWDANHFGLVKGYNMPCN---------TESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (350)
Q Consensus 205 ----------------~~~~~i~vwd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~ 259 (350)
..++.+.-.|+.+++.+-.+..... ....... ..+.++.+++.|+.|+.+|..+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~-~~g~~v~~g~~dG~l~ald~~t 425 (488)
T cd00216 347 HIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA-TAGNLVFAGAADGYFRAFDATT 425 (488)
T ss_pred cccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE-ecCCeEEEECCCCeEEEEECCC
Confidence 1245677788888777666554311 0000111 1357888889999999999999
Q ss_pred CeeEEeec
Q 018784 260 GEQIGCNK 267 (350)
Q Consensus 260 ~~~~~~~~ 267 (350)
|+.+-...
T Consensus 426 G~~lW~~~ 433 (488)
T cd00216 426 GKELWKFR 433 (488)
T ss_pred CceeeEEE
Confidence 99876554
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.30 E-value=0.00029 Score=70.09 Aligned_cols=231 Identities=18% Similarity=0.168 Sum_probs=136.1
Q ss_pred CCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCC----CC
Q 018784 62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD----AP 137 (350)
Q Consensus 62 ~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~----~~ 137 (350)
..|.++.|..+...++-+..+|.|.+-|.++......-.-.+.|.+++|+||.+.++.....+++.+-+- +.. .+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhccc
Confidence 6788999988888888888999999999887765544456678999999999999998888888766432 111 01
Q ss_pred CeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC-ceeEeecCCCCeEEEEEecCCcEEEEE-----cC-CcE
Q 018784 138 PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG-KIVQTLETKSPVTSAEVSRDGRYITTA-----DG-SSV 210 (350)
Q Consensus 138 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-~~i 210 (350)
........+....+.|-.....+=.++ |....-+.... +..........-++++|.-||++++++ .+ +.|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~---gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSE---GRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred cccccccccccceecccccceeeecch---hhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 111111122333444432211111111 11211111110 111111223344578999999998874 45 789
Q ss_pred EEEECCCcceeeeeecC--CCCceeEecCCCCcEEEEec---CCCeEEEEEcccCeeEE----eecCCCcCEEEEEEcCC
Q 018784 211 KFWDANHFGLVKGYNMP--CNTESASLEPKLGNIFIAGG---EDMWVHVFDFHTGEQIG----CNKGHHGPVHCVRFSPG 281 (350)
Q Consensus 211 ~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~sg~---~d~~i~v~d~~~~~~~~----~~~~h~~~v~~l~~sp~ 281 (350)
++||-. +. .+...-+ ......++.| .|.++++-. +|+.|.+|.- +|-... ........|..++|+.+
T Consensus 225 rV~drE-g~-Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 225 RVYDRE-GA-LNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred EEeccc-ch-hhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCC
Confidence 999976 22 2211111 2234556666 466666543 4567888863 232221 22223445899999999
Q ss_pred CCEEEE---ecCCCcEEEecCC
Q 018784 282 GESYAS---GSEDGTIRIWQTN 300 (350)
Q Consensus 282 ~~~las---gs~Dg~v~vw~~~ 300 (350)
+..||. ......|++|.+.
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred CCceeeeecccccceEEEEEec
Confidence 999886 5556669999764
No 317
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.29 E-value=0.00031 Score=63.12 Aligned_cols=116 Identities=10% Similarity=0.103 Sum_probs=90.9
Q ss_pred ccCCceeEEEecccCCCccEEEEEeCCC-CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCC
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSASKDS-SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALT 92 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasgs~d~-~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~ 92 (350)
||...|.-..+ +.++.-++.|..|| .+-|+|..+++.. .+++.-+.|.++..+++|++++.+-....+.+.|+.+
T Consensus 357 ~~~~~VrY~r~---~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn 432 (668)
T COG4946 357 GKKGGVRYRRI---QVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN 432 (668)
T ss_pred CCCCceEEEEE---ccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC
Confidence 67777655544 44777788999999 7999998888764 5666678899999999999999888888888889998
Q ss_pred CCeeeee-eccccEeEEEEcCCCCeEEEee----CCCeEEEEECCC
Q 018784 93 GDEKHSF-EHKHIVRACAFSEDTHLLLTGG----FEKILRIFDLNR 133 (350)
Q Consensus 93 ~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~----~d~~v~vwd~~~ 133 (350)
+.....- ...+-+...+|||++.++|-+- .-+.|+++|+..
T Consensus 433 gnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 433 GNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred CCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence 8765432 3446789999999999998654 346688998864
No 318
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.29 E-value=0.00047 Score=59.74 Aligned_cols=180 Identities=17% Similarity=0.230 Sum_probs=112.4
Q ss_pred CCccEEEEEe-----CCCCeeEeeCC-CCceeeeccCccCCeEEEEECCCCcEEEEe------------------eCCCe
Q 018784 29 PDGFFLVSAS-----KDSSPMLRNGE-TGDWIGTFEGHKGAVWSCCLDANALFSASG------------------SADFT 84 (350)
Q Consensus 29 ~dg~~lasgs-----~d~~v~iw~~~-~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~------------------s~Dg~ 84 (350)
+||++|.+.= ..|.|-|||.. +.+.+.++..|-=.=.-+.+.+|+..|+.+ ..+-+
T Consensus 60 ~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~ps 139 (305)
T PF07433_consen 60 PDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPS 139 (305)
T ss_pred CCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCc
Confidence 4999888753 35668999998 667777776654322345678888655544 22333
Q ss_pred EEEeeCCCCCeeee--e---eccccEeEEEEcCCCCeEEEeeCCCe-------EEEEECCCCC----CCCeeecCCCCcE
Q 018784 85 AKLWDALTGDEKHS--F---EHKHIVRACAFSEDTHLLLTGGFEKI-------LRIFDLNRPD----APPREVGNSSGSI 148 (350)
Q Consensus 85 v~vWd~~~~~~~~~--~---~h~~~V~~~~~~~~~~~l~sg~~d~~-------v~vwd~~~~~----~~~~~~~~~~~~v 148 (350)
+.+-|..+++.+.. + .|...++.+++.++|..++..-+.+- +-+++....- .+......-.+.+
T Consensus 140 L~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 140 LVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYI 219 (305)
T ss_pred eEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCce
Confidence 44445566664443 3 26678999999999876655433322 3344332210 0011112345678
Q ss_pred EEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcE
Q 018784 149 RTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSV 210 (350)
Q Consensus 149 ~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i 210 (350)
-+|++...+..+++|+-.-+.+.+||..+++.+...... .+..++..+++ +++++..|.+
T Consensus 220 gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-D~cGva~~~~~-f~~ssG~G~~ 279 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-DACGVAPTDDG-FLVSSGQGQL 279 (305)
T ss_pred EEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-ceeeeeecCCc-eEEeCCCccE
Confidence 899998877788899888899999999999887665443 23445555555 5555544443
No 319
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.28 E-value=0.00081 Score=63.86 Aligned_cols=266 Identities=15% Similarity=0.169 Sum_probs=146.1
Q ss_pred EEEEEeCCCCeeEeeCCCCceeeeccCccC------CeE--EEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeecccc
Q 018784 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKG------AVW--SCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHI 104 (350)
Q Consensus 33 ~lasgs~d~~v~iw~~~~~~~~~~l~gH~~------~V~--~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~ 104 (350)
.+..++.|+.+.-.|..+|+.+..++-... .+. .+.+. ++..++.++.|+.|.-+|..+++.+..+.-...
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~ 141 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQ 141 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCCC
Confidence 455677789999999999988766543222 110 11111 224556677899999999999998877643222
Q ss_pred E---eEEEEcC--CCCeEEEee---------CCCeEEEEECCCCCCCCeeecCCC-------------------CcEE-E
Q 018784 105 V---RACAFSE--DTHLLLTGG---------FEKILRIFDLNRPDAPPREVGNSS-------------------GSIR-T 150 (350)
Q Consensus 105 V---~~~~~~~--~~~~l~sg~---------~d~~v~vwd~~~~~~~~~~~~~~~-------------------~~v~-~ 150 (350)
+ ..+.-+| .+..++.++ .++.+..+|..+++.......... +.+. +
T Consensus 142 ~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~ 221 (488)
T cd00216 142 VPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWAS 221 (488)
T ss_pred cCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCC
Confidence 1 0011111 123444443 357788888876654433221100 1111 1
Q ss_pred EEEeCCCCcEEEEEeCCC------------------eEEEEECCCCceeEeecCCC-Ce------EEEEEe----cCCc-
Q 018784 151 VAWLHSDQTILSSCTDSG------------------GVRLWDARSGKIVQTLETKS-PV------TSAEVS----RDGR- 200 (350)
Q Consensus 151 ~~~~~~~~~~~~s~~~dg------------------~i~iwd~~~~~~~~~~~~~~-~v------~~~~~~----~~~~- 200 (350)
.+..+.++.+++ ++.++ .|.-.|+.+|+.+...+... .. ....+. -++.
T Consensus 222 pa~d~~~g~V~v-g~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~ 300 (488)
T cd00216 222 PTYDPKTNLVYV-GTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP 300 (488)
T ss_pred eeEeCCCCEEEE-ECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence 222222344444 44333 79999999999888765321 10 001111 1232
Q ss_pred ---EEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEE-----------------ecCCCeEEEEEcccC
Q 018784 201 ---YITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIA-----------------GGEDMWVHVFDFHTG 260 (350)
Q Consensus 201 ---~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-----------------g~~d~~i~v~d~~~~ 260 (350)
.++...++.+...|.++++.+..+...... ....+ +.+++. ...++.+.-+|+.+|
T Consensus 301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~--~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVEQP--MAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred eEEEEEECCCceEEEEECCCCcEeeEeEeeccc--cccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 334445788999999998887765432110 11111 222221 124678888899888
Q ss_pred eeEEeecCC--C------cCE--EEEEEcCCCCEEEEecCCCcEEEecCCCCCccc
Q 018784 261 EQIGCNKGH--H------GPV--HCVRFSPGGESYASGSEDGTIRIWQTNPPNHEE 306 (350)
Q Consensus 261 ~~~~~~~~h--~------~~v--~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~ 306 (350)
+.+=..... . .+. ..+.. .+..++.|+.||.|+.+|..+.+..-
T Consensus 377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 377 KVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred cEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceee
Confidence 765322211 0 111 11222 45678888999999999987776553
No 320
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.28 E-value=6.1e-05 Score=71.34 Aligned_cols=264 Identities=15% Similarity=0.062 Sum_probs=155.4
Q ss_pred eeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC------------CcEEEEeeCCCeEE
Q 018784 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN------------ALFSASGSADFTAK 86 (350)
Q Consensus 19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~------------~~~l~s~s~Dg~v~ 86 (350)
-.++.++| +.++|-||. ..|.+-|.-+.+.+.+++-|+..|+.+.|.|. ..++|++...|.|.
T Consensus 18 ~~A~Dw~~----~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 18 RNAADWSP----SGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred ccccccCc----cceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 44555553 457787776 56778888888999999999999999998642 24678888889999
Q ss_pred EeeCCCCCeeeeee-ccccEeEEEEcC---CC-CeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEE
Q 018784 87 LWDALTGDEKHSFE-HKHIVRACAFSE---DT-HLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTIL 161 (350)
Q Consensus 87 vWd~~~~~~~~~~~-h~~~V~~~~~~~---~~-~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 161 (350)
+||...+..+..+. |...+..+.|-+ +. ..|++-..-.++-+|+..+++...+..-. .....++.+.|-+.+.+
T Consensus 93 l~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys-~~iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS-HEILSCFRVDPFDSRHF 171 (1062)
T ss_pred EEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccC-CcceeeeeeCCCCcceE
Confidence 99998877666665 456777777754 33 56777777789999999887765544322 23344566666665555
Q ss_pred EEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCc-----EEEEEcCCcEEEEECCCcceeeeeecCCCCceeEec
Q 018784 162 SSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGR-----YITTADGSSVKFWDANHFGLVKGYNMPCNTESASLE 236 (350)
Q Consensus 162 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~-----~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 236 (350)
..-+..|.+.+-+.-.-++ ...+...+.+..+.. -..++.+. ..+... ....+........+.
T Consensus 172 ~~l~s~g~vl~~~~l~~se-----p~~pgk~~qI~sd~Sdl~~lere~at~n------s~ts~~-~sa~fity~a~faf~ 239 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSE-----PDVPGKEFQITSDHSDLAHLERETATGN------STTSTP-ASAYFITYCAQFAFS 239 (1062)
T ss_pred EEEccCceEEEEeccCCCC-----CCCCceeEEEecCccchhhhhhhhhccc------cccCCC-cchhHHHHHHhhhcC
Confidence 4444557777765421110 111111122211100 00000000 000000 000000000112233
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCC--CEEEEecCCCcEEEecCCC
Q 018784 237 PKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGG--ESYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 237 ~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~--~~lasgs~Dg~v~vw~~~~ 301 (350)
|...+++.. .-...+.++|+.-...+...--..+.+.-+.+-|++ ..|.+.=.||.+.+|....
T Consensus 240 p~~rn~lfi-~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 240 PHWRNILFI-TFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred hhhhceEEE-EeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 333333322 235678999998777776655455555566777765 5689999999999997643
No 321
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=7.6e-05 Score=71.39 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=78.1
Q ss_pred CCccEEEEEe----CCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee-eeeccc
Q 018784 29 PDGFFLVSAS----KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH-SFEHKH 103 (350)
Q Consensus 29 ~dg~~lasgs----~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~-~~~h~~ 103 (350)
|.--++|.++ ..|+|.|+ +++|++-+..+.. =.+.++||+|..-.|+.|-.-|.+-+|...+.+... ...|+.
T Consensus 25 PsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P-~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a 102 (1416)
T KOG3617|consen 25 PSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYP-VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPA 102 (1416)
T ss_pred CCCceeEEEEecCCCCceEEEE-ecCCCCCcccccc-eehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCC
Confidence 3444777776 46778887 4677765543321 113458999999999999999999999987654333 236999
Q ss_pred cEeEEEEcCCCCeEEEeeCCCeEEEEECC
Q 018784 104 IVRACAFSEDTHLLLTGGFEKILRIFDLN 132 (350)
Q Consensus 104 ~V~~~~~~~~~~~l~sg~~d~~v~vwd~~ 132 (350)
.+..+.|+++|+.++|+..=|.+.+|...
T Consensus 103 ~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 103 PIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred CceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 99999999999999999999999999765
No 322
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.20 E-value=0.00063 Score=64.06 Aligned_cols=158 Identities=18% Similarity=0.178 Sum_probs=108.0
Q ss_pred cCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceee-eccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCC
Q 018784 15 HSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTG 93 (350)
Q Consensus 15 H~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~-~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~ 93 (350)
|...|.--+++. .+++++.|+.-|.+.+++-..++... ..++-.+.+..++++++..++|.|+..|.|.++-+...
T Consensus 32 ~~~~v~lTc~ds---t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 32 FPARVKLTCVDA---TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred CcceEEEEEeec---CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc
Confidence 444454444553 67899999999999999977766543 34444455667778999999999999999999977653
Q ss_pred Cee--eee-----eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCC---CCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784 94 DEK--HSF-----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP---DAPPREVGNSSGSIRTVAWLHSDQTILSS 163 (350)
Q Consensus 94 ~~~--~~~-----~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~s 163 (350)
.+. ..+ .|+..|+++.|++++..+++|...|+|..-.++.. ......+......|..+.+. +..++++
T Consensus 109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~--q~~LLVS 186 (726)
T KOG3621|consen 109 LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL--QSYLLVS 186 (726)
T ss_pred CCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc--cceehHh
Confidence 321 111 36888999999999999999999999998887651 11122333445677777765 4444444
Q ss_pred EeCCCeEEEEECCCCc
Q 018784 164 CTDSGGVRLWDARSGK 179 (350)
Q Consensus 164 ~~~dg~i~iwd~~~~~ 179 (350)
... ...+++++.+.
T Consensus 187 tl~--r~~Lc~tE~et 200 (726)
T KOG3621|consen 187 TLT--RCILCQTEAET 200 (726)
T ss_pred hhh--hhheeecchhH
Confidence 322 34556665443
No 323
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.20 E-value=0.0023 Score=58.18 Aligned_cols=256 Identities=17% Similarity=0.200 Sum_probs=134.3
Q ss_pred CCCccEEEEEe---------CCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeee
Q 018784 28 TPDGFFLVSAS---------KDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHS 98 (350)
Q Consensus 28 s~dg~~lasgs---------~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~ 98 (350)
|||+++++... ..+...|+|+++++....... ...+....|+|+|..+|-. .++.|.+++..++....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~- 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQ- 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEE-
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEE-
Confidence 46887777643 245577899998766543333 5677788999999987754 57899999887663322
Q ss_pred eecc-------------------ccEeEEEEcCCCCeEEEeeCC-CeEEE------------------------------
Q 018784 99 FEHK-------------------HIVRACAFSEDTHLLLTGGFE-KILRI------------------------------ 128 (350)
Q Consensus 99 ~~h~-------------------~~V~~~~~~~~~~~l~sg~~d-~~v~v------------------------------ 128 (350)
+.+. +.-.++.|+|++++|+..-.| ..|+.
T Consensus 78 lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~ 157 (353)
T PF00930_consen 78 LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPR 157 (353)
T ss_dssp SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---E
T ss_pred eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCc
Confidence 2111 123567899999888765432 22332
Q ss_pred -----EECCCCCCCCeee----cCCCCcEEEEEEeCCCCcE-EEEEeCCC---eEEEEECCCCceeEeec--CCC---Ce
Q 018784 129 -----FDLNRPDAPPREV----GNSSGSIRTVAWLHSDQTI-LSSCTDSG---GVRLWDARSGKIVQTLE--TKS---PV 190 (350)
Q Consensus 129 -----wd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~-~~s~~~dg---~i~iwd~~~~~~~~~~~--~~~---~v 190 (350)
+|+.+++...... .....-+..+.|.+++..+ +.....+. .+.++|..+++...... ... ..
T Consensus 158 v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~ 237 (353)
T PF00930_consen 158 VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY 237 (353)
T ss_dssp EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS
T ss_pred eEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee
Confidence 3333222110000 1223346667787665523 33333332 36667777765432222 111 11
Q ss_pred EEEEEe-cCC-cEEEEE-cCC--cEEEEECCCcceeeeeecCCCCc--eeEecCCCCcEEEEecCCC----eEEEEEccc
Q 018784 191 TSAEVS-RDG-RYITTA-DGS--SVKFWDANHFGLVKGYNMPCNTE--SASLEPKLGNIFIAGGEDM----WVHVFDFHT 259 (350)
Q Consensus 191 ~~~~~~-~~~-~~l~~~-~~~--~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~sg~~d~----~i~v~d~~~ 259 (350)
....+. +++ .++..+ .+| +|.+++....... .++...... ...+....+.++.++..+. .|+.-++..
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~ 316 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDS 316 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTE
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCC
Confidence 234444 554 344333 444 5677777665432 222211111 2344555556666666533 455556663
Q ss_pred CeeEEeecCCCcCEEEEEEcCCCCEEEE
Q 018784 260 GEQIGCNKGHHGPVHCVRFSPGGESYAS 287 (350)
Q Consensus 260 ~~~~~~~~~h~~~v~~l~~sp~~~~las 287 (350)
+..+..+......-..+.|||++++++-
T Consensus 317 ~~~~~~LT~~~~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 317 GGEPKCLTCEDGDHYSASFSPDGKYYVD 344 (353)
T ss_dssp TTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred CCCeEeccCCCCCceEEEECCCCCEEEE
Confidence 4444555543333379999999998763
No 324
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.17 E-value=0.0029 Score=52.91 Aligned_cols=280 Identities=15% Similarity=0.085 Sum_probs=137.0
Q ss_pred eccCCceeEEEecccCCC------------------ccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeE-EEEECCCC
Q 018784 13 HGHSRPVVDLFYSPITPD------------------GFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVW-SCCLDANA 73 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~d------------------g~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~-~v~~~~~~ 73 (350)
.-|.+.+.++.+-. .. |.+++.|...+.+...+.++|+....+..- +.|. .....+++
T Consensus 29 gSHs~~~~avd~~s--G~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-~~vk~~a~~d~~~ 105 (354)
T KOG4649|consen 29 GSHSGIVIAVDPQS--GNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-ETVKVRAQCDFDG 105 (354)
T ss_pred ecCCceEEEecCCC--CcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeeh-hhhccceEEcCCC
Confidence 45888888776521 11 668899999999999999999766655432 2221 22457889
Q ss_pred cEEEEeeCCCeEEEeeCCCCCeeeeeeccccEe-EEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEE-
Q 018784 74 LFSASGSADFTAKLWDALTGDEKHSFEHKHIVR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV- 151 (350)
Q Consensus 74 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~-~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~- 151 (350)
.++.-|+.|++....|..+..++....-.+.+. +-+..|-...|+.+...|.+.--................+++.+-
T Consensus 106 glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~sp 185 (354)
T KOG4649|consen 106 GLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASP 185 (354)
T ss_pred ceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCc
Confidence 999999999999999998888777654333322 223445222333333333333222221100000000001111000
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCe-----------EEEEEecCCcEEEEEcCCcEEEEECCCcce
Q 018784 152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPV-----------TSAEVSRDGRYITTADGSSVKFWDANHFGL 220 (350)
Q Consensus 152 ~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v-----------~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~ 220 (350)
.+. .+....+ .-||.+.-+| ..|+.+.......+| ..+.+..++-+.+.-.-...-+|..+++..
T Consensus 186 lcv--~~sv~i~-~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g~t 261 (354)
T KOG4649|consen 186 LCV--GSSVIIT-TVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSGTT 261 (354)
T ss_pred eec--cceEEEE-EeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCCcE
Confidence 000 1111111 1234444444 333333333322221 233333333333332223345566555433
Q ss_pred eeeeecCCCC-ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcC---EEEEEE-----c-CC--CCEEEEe
Q 018784 221 VKGYNMPCNT-ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGP---VHCVRF-----S-PG--GESYASG 288 (350)
Q Consensus 221 ~~~~~~~~~~-~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~---v~~l~~-----s-p~--~~~lasg 288 (350)
.+.+-.+... ..-.......+++..++.||++.+.-.+ ..+.....|.+. ++.+.+ + |- +..|..|
T Consensus 262 ~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~--~sl~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~ig 339 (354)
T KOG4649|consen 262 LHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTS--KSLAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIG 339 (354)
T ss_pred EEEEeCcccceeccCCCCcchhhhhhhcCCCcEEEEEec--ccccccccCCCccceEEEeecCcccccCCeEEccEEEEE
Confidence 3332222110 0000111124677788899998887432 222222233322 333322 2 21 2457789
Q ss_pred cCCCcEEEecCCC
Q 018784 289 SEDGTIRIWQTNP 301 (350)
Q Consensus 289 s~Dg~v~vw~~~~ 301 (350)
+.|..|+.||+..
T Consensus 340 cRDdYv~cldl~~ 352 (354)
T KOG4649|consen 340 CRDDYVRCLDLDT 352 (354)
T ss_pred EccCeEEEEeccc
Confidence 9999999999864
No 325
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.00046 Score=65.82 Aligned_cols=180 Identities=17% Similarity=0.176 Sum_probs=117.9
Q ss_pred eEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecC
Q 018784 64 VWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGN 143 (350)
Q Consensus 64 V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~ 143 (350)
+.|+++ .+++++=|..+|.|.+.+..... ...+.|... .-+|.+++||+.||+|.|..+.+.+..... .
T Consensus 42 is~~av--~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~--d 110 (846)
T KOG2066|consen 42 ISCCAV--HDKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY--D 110 (846)
T ss_pred HHHHHh--hcceeeeccccceEEEEecCCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE--e
Confidence 344444 46788899999999999875443 444555443 557999999999999999988765543322 2
Q ss_pred CCCcEEEEEEeCC----CCcEEEEEeCCCeEEEEECC---CCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECC
Q 018784 144 SSGSIRTVAWLHS----DQTILSSCTDSGGVRLWDAR---SGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDAN 216 (350)
Q Consensus 144 ~~~~v~~~~~~~~----~~~~~~s~~~dg~i~iwd~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~ 216 (350)
....+.++++.|. ..+.+++|+.-| +.++.-+ ....+..-...++|.++.|. |.+++=++|-.|++||..
T Consensus 111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~vyd~~ 187 (846)
T KOG2066|consen 111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKVYDTP 187 (846)
T ss_pred cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEEEecc
Confidence 3456777877654 346788888877 7776532 11222222346788888887 568888888899999998
Q ss_pred CcceeeeeecCCCCce-----eEecCCCCcEEEEecCCCeEEEEEcc
Q 018784 217 HFGLVKGYNMPCNTES-----ASLEPKLGNIFIAGGEDMWVHVFDFH 258 (350)
Q Consensus 217 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~sg~~d~~i~v~d~~ 258 (350)
..+.+.....+..... ..+...+...|+.|..| +|++..++
T Consensus 188 ~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 188 TRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIK 233 (846)
T ss_pred ccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEe
Confidence 8776655444332211 12222345667777655 57888776
No 326
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.16 E-value=0.00069 Score=64.21 Aligned_cols=176 Identities=11% Similarity=0.062 Sum_probs=112.1
Q ss_pred ECCCCcEEE-EeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCC----eEEEEECCCCCCCCeeecC
Q 018784 69 LDANALFSA-SGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEK----ILRIFDLNRPDAPPREVGN 143 (350)
Q Consensus 69 ~~~~~~~l~-s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~----~v~vwd~~~~~~~~~~~~~ 143 (350)
+++||+.+. +.-..+.+-+.|..+.+....+.-.+....++++|+++++++.+.+. ++..-+...
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e---------- 269 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE---------- 269 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeecccc----------
Confidence 456775443 33444677778888777666665555667889999999998876432 222222211
Q ss_pred CCCcEEEE------EEeCCCCcEEEEEeCCCeEEEEECCC-----CceeEeecCCCCeEEEEEecCCcEEEEEc--CCcE
Q 018784 144 SSGSIRTV------AWLHSDQTILSSCTDSGGVRLWDARS-----GKIVQTLETKSPVTSAEVSRDGRYITTAD--GSSV 210 (350)
Q Consensus 144 ~~~~v~~~------~~~~~~~~~~~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~~~i 210 (350)
...+..+ ++.. +++.... .+++|.+.|.++ .+.+..+........+.++|||+++.++. +.+|
T Consensus 270 -~d~~vvfni~~iea~vk-dGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tV 345 (635)
T PRK02888 270 -RDWVVVFNIARIEEAVK-AGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTV 345 (635)
T ss_pred -CceEEEEchHHHHHhhh-CCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcE
Confidence 1111111 1122 2333332 257899999998 46677777777778899999999988765 5789
Q ss_pred EEEECCCcce------------eeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEccc
Q 018784 211 KFWDANHFGL------------VKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT 259 (350)
Q Consensus 211 ~vwd~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~ 259 (350)
.|+|+.+.+. +........+.-..|.. .++.+.+--.|..|..||+..
T Consensus 346 SVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 346 TVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 9999987553 22222222333344544 367788888899999999876
No 327
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.14 E-value=2.1e-06 Score=79.22 Aligned_cols=197 Identities=17% Similarity=0.228 Sum_probs=122.3
Q ss_pred cccEeEEEEcC--CCCeEEEeeCCCeEEEEECCCCCCC-CeeecCCCCcEEEEEEeCCCCcEEEEEe----CCCeEEEEE
Q 018784 102 KHIVRACAFSE--DTHLLLTGGFEKILRIFDLNRPDAP-PREVGNSSGSIRTVAWLHSDQTILSSCT----DSGGVRLWD 174 (350)
Q Consensus 102 ~~~V~~~~~~~--~~~~l~sg~~d~~v~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~s~~----~dg~i~iwd 174 (350)
...+.|++... +.-+++.|..+|.|-+-.+..+.-. .+....+....++.+|.+-|..+++.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34566666543 3357788999999999877654332 3444556667888999887777776653 345799999
Q ss_pred CCCC--ceeEeec----CCCCeEEEEEecCCcEEEEE-cCCcEEEEECCCcc-eeeeeecCCCCceeEecCCCCcEEEEe
Q 018784 175 ARSG--KIVQTLE----TKSPVTSAEVSRDGRYITTA-DGSSVKFWDANHFG-LVKGYNMPCNTESASLEPKLGNIFIAG 246 (350)
Q Consensus 175 ~~~~--~~~~~~~----~~~~v~~~~~~~~~~~l~~~-~~~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~sg 246 (350)
+.++ .+..... ......+++|..+.+++.++ ..+.+.++|+|... ....+.. .......+.|..++++++-
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT-k~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT-KYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh-hhcccceecCCCCCceecc
Confidence 9876 2222221 12345678888887776555 56689999998422 1111100 0122344555567787776
Q ss_pred cCCCeEEEEE-cccCee-EEeecCCC----cCEEEEEEcCCCC-EEEEecC-CCcEEEecCC
Q 018784 247 GEDMWVHVFD-FHTGEQ-IGCNKGHH----GPVHCVRFSPGGE-SYASGSE-DGTIRIWQTN 300 (350)
Q Consensus 247 ~~d~~i~v~d-~~~~~~-~~~~~~h~----~~v~~l~~sp~~~-~lasgs~-Dg~v~vw~~~ 300 (350)
. |+.|.+|| .+.-+. +..+.-.+ ..+..++|+|-.+ .+++.+. .++|++++..
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 6 99999999 443332 22222122 2489999999754 3555554 4788999864
No 328
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.13 E-value=0.0042 Score=62.20 Aligned_cols=199 Identities=12% Similarity=0.155 Sum_probs=123.9
Q ss_pred CceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccC-ccCCeEEEEECCCCcEEEEeeCCCeEEEeeC----C
Q 018784 17 RPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEG-HKGAVWSCCLDANALFSASGSADFTAKLWDA----L 91 (350)
Q Consensus 17 ~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~----~ 91 (350)
+.|.++.|.. +..-+..+..+|.|.+-|.++.... +.| =.+.|.+++|+||..+++-...++++-+-.- -
T Consensus 69 ~~i~s~~fl~---d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLA---DTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI 143 (1265)
T ss_pred cceEEEEEec---ccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence 5788888875 6777788888999999888776542 222 3477999999999999888878888766431 1
Q ss_pred CCCee-------------------eeee-------------cc---------ccEeEEEEcCCCCeEEEe-----eCCCe
Q 018784 92 TGDEK-------------------HSFE-------------HK---------HIVRACAFSEDTHLLLTG-----GFEKI 125 (350)
Q Consensus 92 ~~~~~-------------------~~~~-------------h~---------~~V~~~~~~~~~~~l~sg-----~~d~~ 125 (350)
.-+.+ ..+. +. +.=.++.|--||+++++. ..-+.
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 00000 0010 00 011348899999999873 23389
Q ss_pred EEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE--eCCCeEEEEECCCCceeEe----ecCC-CCeEEEEEecC
Q 018784 126 LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC--TDSGGVRLWDARSGKIVQT----LETK-SPVTSAEVSRD 198 (350)
Q Consensus 126 v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~--~~dg~i~iwd~~~~~~~~~----~~~~-~~v~~~~~~~~ 198 (350)
|++||-+ +.. ........+.-.+++|-|.+..+.+.. +.|+.|.++. ++|-.... +..+ .++..++|+.+
T Consensus 224 irV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 224 IRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred EEEeccc-chh-hcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecCC
Confidence 9999976 221 111112233344677877544433322 3456799987 44433222 2222 34899999999
Q ss_pred CcEEEE---Ec-CCcEEEEECCCcceeee
Q 018784 199 GRYITT---AD-GSSVKFWDANHFGLVKG 223 (350)
Q Consensus 199 ~~~l~~---~~-~~~i~vwd~~~~~~~~~ 223 (350)
+.+|+. .. ...|++|-..++.....
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~NyhWYLK 329 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNYHWYLK 329 (1265)
T ss_pred CCceeeeecccccceEEEEEecCeEEEEE
Confidence 998876 22 34599999988765433
No 329
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.09 E-value=3.2e-05 Score=74.40 Aligned_cols=143 Identities=18% Similarity=0.207 Sum_probs=105.5
Q ss_pred CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeC---------CCeEEEeeCCCCCeeeeee
Q 018784 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSA---------DFTAKLWDALTGDEKHSFE 100 (350)
Q Consensus 30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~---------Dg~v~vWd~~~~~~~~~~~ 100 (350)
+++++.+|...|+|.+.|..+.+.++++.+|++.|. +|+-.|.+|+|+|. |.-|+|||+.+-+.+.-+.
T Consensus 186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~ 263 (1118)
T KOG1275|consen 186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ 263 (1118)
T ss_pred cCcEEEeecccceEEeecCCcCceeeeeecccccee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcc
Confidence 468999999999999999999999999999999985 56678889998865 4568999998766555444
Q ss_pred ccccEeEEEEcCC-CCeEEEeeCCCeEEEEE---CCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784 101 HKHIVRACAFSED-THLLLTGGFEKILRIFD---LNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (350)
Q Consensus 101 h~~~V~~~~~~~~-~~~l~sg~~d~~v~vwd---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~ 175 (350)
-.....-+.|+|. ...+++++..|...+-| +..+.......-.....+..+.+++.++ .++-+..+|.|.+|--
T Consensus 264 ~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 264 FPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWAD 341 (1118)
T ss_pred cccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecC
Confidence 3333466778884 46778888899999888 4333222222233334477888776554 5556777899999973
No 330
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.06 E-value=0.00044 Score=50.29 Aligned_cols=103 Identities=20% Similarity=0.161 Sum_probs=71.8
Q ss_pred eeEEEecccCCCc-cEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee
Q 018784 19 VVDLFYSPITPDG-FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH 97 (350)
Q Consensus 19 v~~~~~~~~s~dg-~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~ 97 (350)
|+++++..+..|| .-|+.||.|..||+|+.+ +.+.++..+ +.|.+++-... ..++-+-..|+|-+++-. ..+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceee
Confidence 7888888888776 688999999999999844 666666654 45556655444 556788899999999853 3344
Q ss_pred eeeccccEeEEEEcC-C--C-CeEEEeeCCCeEE
Q 018784 98 SFEHKHIVRACAFSE-D--T-HLLLTGGFEKILR 127 (350)
Q Consensus 98 ~~~h~~~V~~~~~~~-~--~-~~l~sg~~d~~v~ 127 (350)
....+..+.++++.. + | ..|++|-.+|.|-
T Consensus 76 RiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 444455566665543 2 2 3577887787764
No 331
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.04 E-value=5.2e-05 Score=69.95 Aligned_cols=74 Identities=19% Similarity=0.221 Sum_probs=62.5
Q ss_pred CccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC
Q 018784 59 GHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR 133 (350)
Q Consensus 59 gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~ 133 (350)
.+...|.+++++|+...++.|..||+|.+||...+..... ...-.+..++|||+|.++++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 3667889999999999999999999999999876643322 3444578899999999999999999999999863
No 332
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.04 E-value=0.002 Score=61.22 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=96.4
Q ss_pred EEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEE------------------------------------
Q 018784 162 SSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTA------------------------------------ 205 (350)
Q Consensus 162 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------------------------ 205 (350)
...-..+.+.+.|..+.+...++........+.++++|+++.+.
T Consensus 209 ~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdG 288 (635)
T PRK02888 209 DPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAG 288 (635)
T ss_pred cccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCC
Confidence 33444467888898887777776655555566677777665433
Q ss_pred -----cCCcEEEEECCC-----cceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCee------------E
Q 018784 206 -----DGSSVKFWDANH-----FGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ------------I 263 (350)
Q Consensus 206 -----~~~~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~------------~ 263 (350)
.++.|.+.|.++ ...+..+..+..+..+.++|+...+++++..+.++-|+|+.+.+. +
T Consensus 289 K~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv 368 (635)
T PRK02888 289 KFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV 368 (635)
T ss_pred CEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE
Confidence 124588888887 456666666667777888876445666777799999999987553 2
Q ss_pred EeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784 264 GCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 264 ~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~ 301 (350)
....- .-.....+|.++|..+.|--.|..|..|++..
T Consensus 369 aevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 369 AEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred Eeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22221 22245688999998888888999999999865
No 333
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.94 E-value=0.0043 Score=57.67 Aligned_cols=74 Identities=18% Similarity=0.324 Sum_probs=57.0
Q ss_pred eecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 224 YNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
+..+....++..++ ....|+.|+.||.|.+||...+... .....-.++.++|+|+|.+++.|+..|.+.+||..
T Consensus 256 ipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 256 IPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 34445555666655 4688999999999999998766433 22344557899999999999999999999999974
No 334
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.93 E-value=0.011 Score=52.07 Aligned_cols=238 Identities=13% Similarity=0.067 Sum_probs=130.4
Q ss_pred CCCccEEEEEe----------CCCCeeEeeCCCCceeeecc--C-ccCCe----EEEEECCCCcEEEE--eeCCCeEEEe
Q 018784 28 TPDGFFLVSAS----------KDSSPMLRNGETGDWIGTFE--G-HKGAV----WSCCLDANALFSAS--GSADFTAKLW 88 (350)
Q Consensus 28 s~dg~~lasgs----------~d~~v~iw~~~~~~~~~~l~--g-H~~~V----~~v~~~~~~~~l~s--~s~Dg~v~vW 88 (350)
+|||+.+.+++ ....|.+||..+-.+...+. . |...+ +..+++.+++++.. .+--.+|-|-
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVV 123 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVV 123 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEE
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEE
Confidence 45888887765 24457899999887776443 2 22221 23456667765543 2333556666
Q ss_pred eCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee----cCCCC-cEEEEEEeCCCCcEEEE
Q 018784 89 DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV----GNSSG-SIRTVAWLHSDQTILSS 163 (350)
Q Consensus 89 d~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~----~~~~~-~v~~~~~~~~~~~~~~s 163 (350)
|+..++....+.-+++..-.-..+ .-+.+-+.||.+....+.......... ..... ....-++...++.++..
T Consensus 124 Dl~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~ 201 (342)
T PF06433_consen 124 DLAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFV 201 (342)
T ss_dssp ETTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEE
T ss_pred ECCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEE
Confidence 766666655555555433222222 347788899999988887433221110 00011 11111222233333332
Q ss_pred EeCCCeEEEEECCCCce--eEeecC-----------CCCeEEEEEecC-CcEEEEEc----------CCcEEEEECCCcc
Q 018784 164 CTDSGGVRLWDARSGKI--VQTLET-----------KSPVTSAEVSRD-GRYITTAD----------GSSVKFWDANHFG 219 (350)
Q Consensus 164 ~~~dg~i~iwd~~~~~~--~~~~~~-----------~~~v~~~~~~~~-~~~l~~~~----------~~~i~vwd~~~~~ 219 (350)
+.+|.|+--|+..... ...+.. ++...-+++++. +++.+... +..|-++|+.+.+
T Consensus 202 -Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k 280 (342)
T PF06433_consen 202 -SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK 280 (342)
T ss_dssp -BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE
T ss_pred -ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe
Confidence 4667888877765432 112211 123445677754 44444321 1258889999999
Q ss_pred eeeeeecCCCCceeEecCCCCcEE-EEecCCCeEEEEEcccCeeEEeecC
Q 018784 220 LVKGYNMPCNTESASLEPKLGNIF-IAGGEDMWVHVFDFHTGEQIGCNKG 268 (350)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~l-~sg~~d~~i~v~d~~~~~~~~~~~~ 268 (350)
.+..+.++....++.+......+| +....++.+.+||..+|+.++.+.+
T Consensus 281 rv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 281 RVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred EEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 998888765555666665554455 4456789999999999999887753
No 335
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.91 E-value=0.013 Score=51.13 Aligned_cols=225 Identities=14% Similarity=0.081 Sum_probs=123.2
Q ss_pred CccEEEEEeCCCCeeEeeC-CCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee-----------
Q 018784 30 DGFFLVSASKDSSPMLRNG-ETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH----------- 97 (350)
Q Consensus 30 dg~~lasgs~d~~v~iw~~-~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~----------- 97 (350)
.+..|+.|+.+| +.+++. ....+....+ ..+|..+..-++-..++.- .|+.+.++++..-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEE-cCCccEEEEchhhccccccccccccccc
Confidence 567889999988 888887 3334433333 2338888877765544433 36999999976443222
Q ss_pred ----eeeccccEeEEE--EcCCCCeEEEeeCCCeEEEEECCCCCCC---CeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784 98 ----SFEHKHIVRACA--FSEDTHLLLTGGFEKILRIFDLNRPDAP---PREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168 (350)
Q Consensus 98 ----~~~h~~~V~~~~--~~~~~~~l~sg~~d~~v~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg 168 (350)
.+.....+...+ -.+.+...+.....+.|.+|........ ....-.....+..++|. ++. ++.|.. +
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~-i~v~~~-~ 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNK-ICVGTS-K 157 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCE-EEEEeC-C
Confidence 222333344444 1234444455555669999987653211 11122334678888888 333 444444 4
Q ss_pred eEEEEECCCCceeEeecCC-------------CCeEEEEEecCCcEEEEEcCCcEEEEECCCcce-eeeeecCCCCceeE
Q 018784 169 GVRLWDARSGKIVQTLETK-------------SPVTSAEVSRDGRYITTADGSSVKFWDANHFGL-VKGYNMPCNTESAS 234 (350)
Q Consensus 169 ~i~iwd~~~~~~~~~~~~~-------------~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~-~~~~~~~~~~~~~~ 234 (350)
...+.|+.++.....+... .++. +.--+++.+|.+.++ .-.+.|...... ...+.++..+....
T Consensus 158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~Ll~~~~-~g~fv~~~G~~~r~~~i~W~~~p~~~~ 235 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLG-IFQLSDNEFLLCYDN-IGVFVNKNGEPSRKSTIQWSSAPQSVA 235 (275)
T ss_pred ceEEEecCCCCceEEeCccCCcchhhhcccCCCceE-EEEeCCceEEEEecc-eEEEEcCCCCcCcccEEEcCCchhEEE
Confidence 6888999877543332211 1222 222344566665443 223333322111 12344444444444
Q ss_pred ecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC
Q 018784 235 LEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG 268 (350)
Q Consensus 235 ~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~ 268 (350)
+.. .++++-.. +.|.||++.+++.+.++..
T Consensus 236 ~~~---pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 236 YSS---PYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEC---CEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 432 35555444 5599999999988776654
No 336
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.90 E-value=5.2e-06 Score=76.74 Aligned_cols=162 Identities=15% Similarity=0.190 Sum_probs=111.1
Q ss_pred eccCCceeEEEecccCCCccEEEEEe----CCCCeeEeeCCCC--cee--eeccC-ccCCeEEEEECCCCcEEEEeeCCC
Q 018784 13 HGHSRPVVDLFYSPITPDGFFLVSAS----KDSSPMLRNGETG--DWI--GTFEG-HKGAVWSCCLDANALFSASGSADF 83 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~dg~~lasgs----~d~~v~iw~~~~~--~~~--~~l~g-H~~~V~~v~~~~~~~~l~s~s~Dg 83 (350)
.+|..+.++++|++. |...||.|= .|..+.|||..++ .+. ..|.+ --..+.++||..+.+++.+|....
T Consensus 99 p~~ar~Ct~lAwneL--Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr 176 (783)
T KOG1008|consen 99 PGYARPCTSLAWNEL--DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR 176 (783)
T ss_pred ccccccccccccccc--cHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccc
Confidence 577888899999885 556777662 4667899998765 111 12222 233455788888888899999999
Q ss_pred eEEEeeCCCCCeeeeeeccccEeEEEEcC-CCCeEEEeeCCCeEEEEE-CCCCCCCCeeecCCCC----cEEEEEEeCCC
Q 018784 84 TAKLWDALTGDEKHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFD-LNRPDAPPREVGNSSG----SIRTVAWLHSD 157 (350)
Q Consensus 84 ~v~vWd~~~~~~~~~~~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd-~~~~~~~~~~~~~~~~----~v~~~~~~~~~ 157 (350)
.+.++|+.........-.+..|..+...| .+.++++-. |+.|.+|| ..+-+.+.....+... .+..++|.|..
T Consensus 177 ~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 177 SVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 99999975332222222455678888888 777776655 99999999 3333333333332222 48899999887
Q ss_pred CcEEEEEeCC-CeEEEEECCC
Q 018784 158 QTILSSCTDS-GGVRLWDARS 177 (350)
Q Consensus 158 ~~~~~s~~~d-g~i~iwd~~~ 177 (350)
..+++++..| ++|+++|+..
T Consensus 256 tglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 256 TGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cchhhhhccCcceEEEecccc
Confidence 7778888777 6899999863
No 337
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.89 E-value=3.7e-05 Score=44.05 Aligned_cols=39 Identities=41% Similarity=0.675 Sum_probs=34.9
Q ss_pred CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEee
Q 018784 51 GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWD 89 (350)
Q Consensus 51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd 89 (350)
+++...+.+|...|.++.+.+.+.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 356677888999999999999999999999999999996
No 338
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.89 E-value=4.7e-05 Score=43.58 Aligned_cols=38 Identities=53% Similarity=0.939 Sum_probs=33.1
Q ss_pred eeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784 261 EQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 261 ~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~ 298 (350)
+....+..|...|.+++|+|.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34455667888999999999999999999999999996
No 339
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.89 E-value=0.0098 Score=52.43 Aligned_cols=257 Identities=16% Similarity=0.213 Sum_probs=141.9
Q ss_pred CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEe----------eCCCeEEEeeCCCCCeeeeeeccc--------
Q 018784 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASG----------SADFTAKLWDALTGDEKHSFEHKH-------- 103 (350)
Q Consensus 42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~----------s~Dg~v~vWd~~~~~~~~~~~h~~-------- 103 (350)
.+.+.|..+++.+..+.+ +-.-.+.++|+++.+.++ -..-.|.+||..+-.....+.-+.
T Consensus 18 rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~ 95 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP 95 (342)
T ss_dssp EEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred eEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence 588999999998887764 222335678999988764 334569999998876655442111
Q ss_pred cEeEEEEcCCCCeEEEeeC--CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECC-CCce
Q 018784 104 IVRACAFSEDTHLLLTGGF--EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR-SGKI 180 (350)
Q Consensus 104 ~V~~~~~~~~~~~l~sg~~--d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~-~~~~ 180 (350)
.....+++.++++++..-. -..|.|-|+...+-.. ... -.++ ....|..+.-+.+-..||++.-..+. .|+.
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~-ei~-~PGC---~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVG-EID-TPGC---WLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEE-EEE-GTSE---EEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred cccceEEccCCcEEEEEccCCCCeEEEEECCCCceee-eec-CCCE---EEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 1234577888887766433 4567788876433221 111 1121 11123332334444467888888876 5555
Q ss_pred eEeec----C-CCCe-EEEEEe-cCCcEEEEEcCCcEEEEECCCccee--eeeec-----------CCCCceeEecCCCC
Q 018784 181 VQTLE----T-KSPV-TSAEVS-RDGRYITTADGSSVKFWDANHFGLV--KGYNM-----------PCNTESASLEPKLG 240 (350)
Q Consensus 181 ~~~~~----~-~~~v-~~~~~~-~~~~~l~~~~~~~i~vwd~~~~~~~--~~~~~-----------~~~~~~~~~~~~~~ 240 (350)
..... . ..++ ..-.+. ..+.++..+-.|.|+--|+...... ..... |.......+++..+
T Consensus 171 ~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~ 250 (342)
T PF06433_consen 171 AQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG 250 (342)
T ss_dssp EEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred eEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence 42221 1 1121 222233 2345666666677776666543321 11111 22233455555555
Q ss_pred cEEEEec-------CCC--eEEEEEcccCeeEEeecCCCcCEEEEEEcCCC-CEEEE-ecCCCcEEEecCCCCCccc
Q 018784 241 NIFIAGG-------EDM--WVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGG-ESYAS-GSEDGTIRIWQTNPPNHEE 306 (350)
Q Consensus 241 ~~l~sg~-------~d~--~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~-~~las-gs~Dg~v~vw~~~~~~~~~ 306 (350)
++++.-- .|+ .|-+||+.+++.+..+.. ..++.+|..+.+. ++|.+ ...++.|.+||..+.+...
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 5544311 122 577889999999887763 2347789999765 46654 4568999999987765543
No 340
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.89 E-value=0.012 Score=50.19 Aligned_cols=192 Identities=15% Similarity=0.157 Sum_probs=114.1
Q ss_pred eeccCCceeEEEecccCCC-ccEEEEEeCCCCeeEeeCCCCceeeec--cCccCCeEEEEECCCCcEEEEeeCCCeEEEe
Q 018784 12 CHGHSRPVVDLFYSPITPD-GFFLVSASKDSSPMLRNGETGDWIGTF--EGHKGAVWSCCLDANALFSASGSADFTAKLW 88 (350)
Q Consensus 12 ~~gH~~~v~~~~~~~~s~d-g~~lasgs~d~~v~iw~~~~~~~~~~l--~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vW 88 (350)
+.|=...+++++|+| + ++++++....+.|...+. +|+.++.+ .| .+-.-.+++-.++.++++.-.++.+.+.
T Consensus 17 l~g~~~e~SGLTy~p---d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 17 LPGILDELSGLTYNP---DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp -TT--S-EEEEEEET---TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred CCCccCCccccEEcC---CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 356666799999997 5 556777777777777775 57777755 44 2455678888888888887779999999
Q ss_pred eCCCCC---ee---e--ee----eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC--CCCCCee--------ecCCCC
Q 018784 89 DALTGD---EK---H--SF----EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR--PDAPPRE--------VGNSSG 146 (350)
Q Consensus 89 d~~~~~---~~---~--~~----~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~--~~~~~~~--------~~~~~~ 146 (350)
++.... .. . .+ .++..+-.++|.|.++.|+.+-.....++|.+.. ....... ......
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceec
Confidence 873221 11 1 11 1455689999999888888777776677776643 1111100 112234
Q ss_pred cEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC----------CCeEEEEEecCCcEEEEEcCCc
Q 018784 147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK----------SPVTSAEVSRDGRYITTADGSS 209 (350)
Q Consensus 147 ~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~~~ 209 (350)
.+.++++.+..+.+++-....+.|..+| .+|+.+..+... .....+++.++|++.+++.-+.
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNl 243 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNL 243 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCce
Confidence 5678888888777777777888999999 678776665432 2467899999998888776443
No 341
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.004 Score=60.18 Aligned_cols=200 Identities=16% Similarity=0.193 Sum_probs=113.9
Q ss_pred EECCCCcEEEEeeCCCeEEEeeCCCCCeeeee-ecccc-EeEEEEcCCCCeEEEeeCCC-----eEEEEECCCCCCC--C
Q 018784 68 CLDANALFSASGSADFTAKLWDALTGDEKHSF-EHKHI-VRACAFSEDTHLLLTGGFEK-----ILRIFDLNRPDAP--P 138 (350)
Q Consensus 68 ~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~-~h~~~-V~~~~~~~~~~~l~sg~~d~-----~v~vwd~~~~~~~--~ 138 (350)
++++.+..+|-|+.||.|.+.+-.-. ..+.+ .+... |..+....+..+|++.+.|. .+++|++++.+.. +
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~~-~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSFQ-LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccce-eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 56778888899999999988874321 21222 33333 55555555556788776654 5999998754211 1
Q ss_pred eee-----cC-----CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEE--C-CC--CceeEeecCCCCeEEEEEecCCcE-E
Q 018784 139 REV-----GN-----SSGSIRTVAWLHSDQTILSSCTDSGGVRLWD--A-RS--GKIVQTLETKSPVTSAEVSRDGRY-I 202 (350)
Q Consensus 139 ~~~-----~~-----~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd--~-~~--~~~~~~~~~~~~v~~~~~~~~~~~-l 202 (350)
... .. ...++.+++.+ .+-..++.|-.+|.|.++. + |. -+.........+|+.+.+..+++. +
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs-~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVS-EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEE-ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 111 11 12334445544 4566788888899999884 2 11 122223345679999999988865 4
Q ss_pred EEEcCCcEEEEECCCcceeee-eecCCC-CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec-CCCc
Q 018784 203 TTADGSSVKFWDANHFGLVKG-YNMPCN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK-GHHG 271 (350)
Q Consensus 203 ~~~~~~~i~vwd~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~-~h~~ 271 (350)
.++.-..|.+|.+....+... ..-.+. ..+.++++..++ +++++ ...+.+|+......-..+. ||.-
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~q-fIca~-~e~l~fY~sd~~~~cfaf~~g~kk 257 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQ-FICAG-SEFLYFYDSDGRGPCFAFEVGEKK 257 (933)
T ss_pred EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCcc-EEEec-CceEEEEcCCCcceeeeecCCCeE
Confidence 455556788888874431111 221111 223344443333 44443 3468899877544444444 5553
No 342
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.86 E-value=0.016 Score=50.59 Aligned_cols=224 Identities=12% Similarity=0.072 Sum_probs=121.8
Q ss_pred CCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee----------
Q 018784 71 ANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE---------- 140 (350)
Q Consensus 71 ~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~---------- 140 (350)
..+..++-|..+| +.+++...........+...|..+..-|+-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 4566777787777 8888883333334444445599999988777766654 499999998643322210
Q ss_pred ---ecCCCCcEEEEE--EeCCCCcEEEEEeCCCeEEEEECCC----C-ceeEeecCCCCeEEEEEecCCcEEEEEcCCcE
Q 018784 141 ---VGNSSGSIRTVA--WLHSDQTILSSCTDSGGVRLWDARS----G-KIVQTLETKSPVTSAEVSRDGRYITTADGSSV 210 (350)
Q Consensus 141 ---~~~~~~~v~~~~--~~~~~~~~~~s~~~dg~i~iwd~~~----~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i 210 (350)
.......+..++ -...+...++.+.. ++|.+|.... . +....+.....+..++|. +..++.+.....
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-k~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~~f 159 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-KKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSKGF 159 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEEC-CEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCCce
Confidence 111122233333 11233444544444 5888877654 2 566777788889999999 345555545567
Q ss_pred EEEECCCcceeeeeecCCCC-----------ceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE-eecCCCcCEEEEEE
Q 018784 211 KFWDANHFGLVKGYNMPCNT-----------ESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG-CNKGHHGPVHCVRF 278 (350)
Q Consensus 211 ~vwd~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~-~~~~h~~~v~~l~~ 278 (350)
.+.|+.+.....-+...... ....+...++++|++- |..-.+.|. .|+..+ ........+.++++
T Consensus 160 ~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W~~~p~~~~~ 236 (275)
T PF00780_consen 160 YLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNK-NGEPSRKSTIQWSSAPQSVAY 236 (275)
T ss_pred EEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcC-CCCcCcccEEEcCCchhEEEE
Confidence 88888765433222111100 1111222223444432 222222232 343322 11122334556666
Q ss_pred cCCCCEEEEecCCCcEEEecCCCCCcc
Q 018784 279 SPGGESYASGSEDGTIRIWQTNPPNHE 305 (350)
Q Consensus 279 sp~~~~lasgs~Dg~v~vw~~~~~~~~ 305 (350)
. .++|+.-..+ .|-||++.+.+..
T Consensus 237 ~--~pyli~~~~~-~iEV~~~~~~~lv 260 (275)
T PF00780_consen 237 S--SPYLIAFSSN-SIEVRSLETGELV 260 (275)
T ss_pred E--CCEEEEECCC-EEEEEECcCCcEE
Confidence 3 4577766665 4999998776543
No 343
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.79 E-value=0.0037 Score=60.25 Aligned_cols=216 Identities=15% Similarity=0.148 Sum_probs=112.0
Q ss_pred CccEEEEEeCCC------CeeEeeCCCCceee--eccCccCCeEEEEECCCCcEEEEeeCC------CeEEEeeCCCCCe
Q 018784 30 DGFFLVSASKDS------SPMLRNGETGDWIG--TFEGHKGAVWSCCLDANALFSASGSAD------FTAKLWDALTGDE 95 (350)
Q Consensus 30 dg~~lasgs~d~------~v~iw~~~~~~~~~--~l~gH~~~V~~v~~~~~~~~l~s~s~D------g~v~vWd~~~~~~ 95 (350)
.+.+++.|+.++ ++..+|..++++.. .+..... -.++++ .++.+.++||.| .++..+|..+++-
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEE-ECCEEEEEccccCCCcccceEEEecCCCCce
Confidence 456778888774 57789988887654 2332222 223333 356777889888 3566777766541
Q ss_pred ee--eeeccccEeEEEEcCCCCeEEEeeCCCe-----EEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784 96 KH--SFEHKHIVRACAFSEDTHLLLTGGFEKI-----LRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSG 168 (350)
Q Consensus 96 ~~--~~~h~~~V~~~~~~~~~~~l~sg~~d~~-----v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg 168 (350)
.. .+.....-.+++ .-+|.+.+.||.||. +..||..+.... ............+...-++.+.+.||.++
T Consensus 362 ~~~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~--~va~m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWT--PVAPMLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eccCCccCccccceeE-EECCEEEEEeccccccccccEEEecCCCCccc--ccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence 11 111111101111 225777788888855 667776543322 11211112223332334677777777554
Q ss_pred ------eEEEEECCCCce--eEeecCCCCeEEEEEecCCcEEEEEcCC-----cEEEEECCCcceeeeeecCCCCceeEe
Q 018784 169 ------GVRLWDARSGKI--VQTLETKSPVTSAEVSRDGRYITTADGS-----SVKFWDANHFGLVKGYNMPCNTESASL 235 (350)
Q Consensus 169 ------~i~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~~-----~i~vwd~~~~~~~~~~~~~~~~~~~~~ 235 (350)
++..||..+.+= +..+.....-..++...+.-|++++.++ .|..||..+.+....-.+........+
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~ 518 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGV 518 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccE
Confidence 577888877642 2222222222223333333344444333 378898877554333222222222222
Q ss_pred cCCCCcEEEEecCCC
Q 018784 236 EPKLGNIFIAGGEDM 250 (350)
Q Consensus 236 ~~~~~~~l~sg~~d~ 250 (350)
..-.+.++++|+.|+
T Consensus 519 ~~~~~~ly~vGG~~~ 533 (571)
T KOG4441|consen 519 VVLGGKLYAVGGFDG 533 (571)
T ss_pred EEECCEEEEEecccC
Confidence 333578889998776
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.78 E-value=0.0063 Score=56.33 Aligned_cols=165 Identities=19% Similarity=0.184 Sum_probs=97.0
Q ss_pred CceeeeccCccCCeEEEEECCCCcEEEEe---eCC-CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE-EeeCCCe
Q 018784 51 GDWIGTFEGHKGAVWSCCLDANALFSASG---SAD-FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKI 125 (350)
Q Consensus 51 ~~~~~~l~gH~~~V~~v~~~~~~~~l~s~---s~D-g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-sg~~d~~ 125 (350)
+.....+..-...+..-.|++++..++-- ... ..+.++++.+++....+.-...-..-+|+|+|+.|+ +...|+.
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence 33333443333445556788887654322 222 468899999888766666555556678999998776 4556776
Q ss_pred EEEE--ECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe--EEEEECCCCceeEeec--CCCCeEEEEEecCC
Q 018784 126 LRIF--DLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDARSGKIVQTLE--TKSPVTSAEVSRDG 199 (350)
Q Consensus 126 v~vw--d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~--i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~ 199 (350)
..|| |+.....+ + +-...+.-..-.|+|++..++.+....|. |.+.|...+.. ..+. ..... .-.++|||
T Consensus 262 ~~iy~~dl~~~~~~-~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~-~p~~SpdG 337 (425)
T COG0823 262 PDIYLMDLDGKNLP-R-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS-NPVWSPDG 337 (425)
T ss_pred ccEEEEcCCCCcce-e-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc-CccCCCCC
Confidence 5555 66544422 2 22233333356678888888877766665 55556555443 2222 22222 56689999
Q ss_pred cEEEEEc--CCc--EEEEECCCcc
Q 018784 200 RYITTAD--GSS--VKFWDANHFG 219 (350)
Q Consensus 200 ~~l~~~~--~~~--i~vwd~~~~~ 219 (350)
++++... ++. |.+.|+.+..
T Consensus 338 ~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 338 DKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CEEEEEeccCCceeeEEeccCCCC
Confidence 9886543 444 5556655444
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.71 E-value=0.026 Score=52.55 Aligned_cols=217 Identities=14% Similarity=0.126 Sum_probs=107.1
Q ss_pred CeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeec
Q 018784 63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG 142 (350)
Q Consensus 63 ~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~ 142 (350)
....+..+|++++++. ..||.-.|+.....+... .+.-....|.+.+. +|+-...++|+++.--+.........
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~ 107 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKL 107 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcC
Confidence 3567889999999877 667777777633222221 23345677888554 66666688999973221111111111
Q ss_pred CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCc----
Q 018784 143 NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHF---- 218 (350)
Q Consensus 143 ~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~---- 218 (350)
...+..+- . +.++...+. +.|.+||..+++.+..+.... +..+.|++++.+++......+.+++-...
T Consensus 108 --~~~~~~If-~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~ 179 (443)
T PF04053_consen 108 --PFSVEKIF-G---GNLLGVKSS-DFICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKDSIYILKYNLEAVAA 179 (443)
T ss_dssp --SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHH
T ss_pred --CcccceEE-c---CcEEEEECC-CCEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCCeEEEEEecchhccc
Confidence 11233342 1 444544444 489999999999999998764 89999999999998887778888764332
Q ss_pred --------ceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecC
Q 018784 219 --------GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSE 290 (350)
Q Consensus 219 --------~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~ 290 (350)
.............+..+. +..|+..+.. .|+. +-.|+. ..+..-..+++=+.+.|....+.....
T Consensus 180 ~~~~g~e~~f~~~~E~~~~IkSg~W~---~d~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~~~ly~~Dr 252 (443)
T PF04053_consen 180 IPEEGVEDAFELIHEISERIKSGCWV---EDCFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLLGYLPKENRLYLIDR 252 (443)
T ss_dssp BTTTB-GGGEEEEEEE-S--SEEEEE---TTEEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEEEEETTTTEEEEE-T
T ss_pred ccccCchhceEEEEEecceeEEEEEE---cCEEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEEEEEccCCEEEEEEC
Confidence 111111112223333333 2244444433 4444 223322 112222345666777776667777778
Q ss_pred CCcEEEecCC
Q 018784 291 DGTIRIWQTN 300 (350)
Q Consensus 291 Dg~v~vw~~~ 300 (350)
|+.|..+.++
T Consensus 253 ~~~v~~~~ld 262 (443)
T PF04053_consen 253 DGNVISYELD 262 (443)
T ss_dssp T--EEEEE--
T ss_pred CCCEEEEEEC
Confidence 8888887664
No 346
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.69 E-value=0.0021 Score=46.85 Aligned_cols=102 Identities=16% Similarity=0.155 Sum_probs=68.2
Q ss_pred EEEEEEeC---CCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeee
Q 018784 148 IRTVAWLH---SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY 224 (350)
Q Consensus 148 v~~~~~~~---~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 224 (350)
|.++++++ ++..-|+.|++|..||+|+- .+.+..+.....+++++-...+++..+-.+|+|-+|+.... +...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~R--lWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRSQR--LWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCcce--eeee
Confidence 44555443 34467888999999999973 47788888889999999888888888888999988875332 1111
Q ss_pred ecCCCCceeEecCC---CCcEEEEecCCCeEE
Q 018784 225 NMPCNTESASLEPK---LGNIFIAGGEDMWVH 253 (350)
Q Consensus 225 ~~~~~~~~~~~~~~---~~~~l~sg~~d~~i~ 253 (350)
.......+..+... .-.-|++|..+|.|-
T Consensus 78 KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 78 KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 11222233322221 124688888888764
No 347
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.00074 Score=61.70 Aligned_cols=143 Identities=14% Similarity=0.185 Sum_probs=98.7
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcE--------EEEEcCCcEEEEECCCcce-----ee
Q 018784 156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRY--------ITTADGSSVKFWDANHFGL-----VK 222 (350)
Q Consensus 156 ~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~--------l~~~~~~~i~vwd~~~~~~-----~~ 222 (350)
....++.++.....++--|++.|+.+..+..+..|+-+.+.|+.+. +++-++..|.=||+|-... .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 3445566777767899999999999999998887888888887643 3444677888899884332 11
Q ss_pred eeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeE-EeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 223 GYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQI-GCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~-~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
...........++......++++||.+|.|++||- .+... ..+.+...+|..+..+.+|++++..+ +..+.|-++.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 11122222222333334578999999999999997 44433 34568889999999999999876544 4466666553
No 348
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.65 E-value=0.0015 Score=64.23 Aligned_cols=143 Identities=13% Similarity=0.191 Sum_probs=93.4
Q ss_pred CCCcEEEE-EeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCC--------cEEEEEcCCcEEEEECCCcc--eeee-
Q 018784 156 SDQTILSS-CTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDG--------RYITTADGSSVKFWDANHFG--LVKG- 223 (350)
Q Consensus 156 ~~~~~~~s-~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~~~~i~vwd~~~~~--~~~~- 223 (350)
.+..+++. ..+...|+-.|++.|+.+..+..+..+.-..+.|+. ..+++-++..+..||+|-.. ++..
T Consensus 491 ~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~ 570 (794)
T PF08553_consen 491 QDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQ 570 (794)
T ss_pred cccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecc
Confidence 34455444 345578999999999999999876544334444432 34566678889999998643 3321
Q ss_pred -eecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEE-eecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 224 -YNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIG-CNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 224 -~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~-~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
..........++......++|+|+.+|.||+||- .|.... .+.+-..+|..|..+.||++++..+. ..|.|+++.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t~ 647 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDTL 647 (794)
T ss_pred ccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEEe
Confidence 1111222222223334578999999999999994 343332 34577899999999999999775554 467777653
No 349
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.64 E-value=0.028 Score=47.24 Aligned_cols=136 Identities=13% Similarity=0.059 Sum_probs=87.3
Q ss_pred CCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEE
Q 018784 72 NALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTV 151 (350)
Q Consensus 72 ~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~ 151 (350)
...+++-||..+.++--|..+++......-...+.+-+.- -|.+++.|...+.+.+-+..++.+........ .|..-
T Consensus 22 skT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~--~vk~~ 98 (354)
T KOG4649|consen 22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE--TVKVR 98 (354)
T ss_pred CceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh--hhccc
Confidence 3556677788888888888877766544333333332222 46678999999999999988775543332211 22222
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCe-EEEEEec-CCcEEEEEcCCcE
Q 018784 152 AWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPV-TSAEVSR-DGRYITTADGSSV 210 (350)
Q Consensus 152 ~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v-~~~~~~~-~~~~l~~~~~~~i 210 (350)
+-...+..++..++.|++....|.++..++...+....+ .+-++.| ++.+.++...|.+
T Consensus 99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 223456678888999999999999999998887765443 2334555 5666555554443
No 350
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.60 E-value=0.011 Score=52.86 Aligned_cols=131 Identities=20% Similarity=0.299 Sum_probs=86.1
Q ss_pred CeEEEEECCCC-------ceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcc-eeeeeecCCCCceeEecCCC
Q 018784 168 GGVRLWDARSG-------KIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFG-LVKGYNMPCNTESASLEPKL 239 (350)
Q Consensus 168 g~i~iwd~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~ 239 (350)
|.|.++++... +.+.......+|++++-. +++ ++++.++.|.+|++.... ..+.-.........++.. .
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~-~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV-F 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-E
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEec-c
Confidence 78999999874 233444557888888766 445 666777899999987776 444433333333333333 2
Q ss_pred CcEEEEecCCCeEEEEEccc-CeeEEee--cCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784 240 GNIFIAGGEDMWVHVFDFHT-GEQIGCN--KGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 240 ~~~l~sg~~d~~i~v~d~~~-~~~~~~~--~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~ 301 (350)
++++++|..-+.+.++.++. ...+..+ .....+++++.|-+++..++.+..+|.|.++..++
T Consensus 139 ~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 139 KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 56888998888888876554 2322222 23456789999987767899999999999998864
No 351
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.00036 Score=67.02 Aligned_cols=140 Identities=16% Similarity=0.233 Sum_probs=97.2
Q ss_pred EEEecCCcEEEEE-----cCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec
Q 018784 193 AEVSRDGRYITTA-----DGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK 267 (350)
Q Consensus 193 ~~~~~~~~~l~~~-----~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~ 267 (350)
..|+|..-+++.+ .+|.|.||- .++.+-+..+.|.+..+.+++|. .-+|+.|..-|.+.+|...+.+......
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe-~~vLa~gwe~g~~~v~~~~~~e~htv~~ 98 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPE-EFVLAQGWEMGVSDVQKTNTTETHTVVE 98 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChH-HHHHhhccccceeEEEecCCceeeeecc
Confidence 4466665555433 467888884 33445455555666666777763 4678888899999999988777776777
Q ss_pred CCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccchhHhhh
Q 018784 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGKAEEKQ 345 (350)
Q Consensus 268 ~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~ 345 (350)
.|..+|.-+.|||+|..|+|+..=|.|.+|.++....... +.-+.-...++.. ..+|.+++| .||.+
T Consensus 99 th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~--------~~~~~hel~~~lt-l~cfRL~~~--~Ee~~ 165 (1416)
T KOG3617|consen 99 THPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQT--------SNIMQHELNDQLT-LWCFRLSYD--REEKF 165 (1416)
T ss_pred CCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccccc--------chhhhhHhhceee-EEEEecCCC--hHHhh
Confidence 8999999999999999999999999999999874322111 1122222344444 478888888 45555
No 352
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.58 E-value=0.035 Score=50.93 Aligned_cols=236 Identities=17% Similarity=0.163 Sum_probs=124.0
Q ss_pred CeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee-------------------------ee------------------e
Q 018784 63 AVWSCCLDANALFSASGSADFTAKLWDALTGDEK-------------------------HS------------------F 99 (350)
Q Consensus 63 ~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~-------------------------~~------------------~ 99 (350)
.|..+.|.++..-|+.|-..|.|.||.....+.. .. +
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 3667777777666677777888888753221100 00 0
Q ss_pred -eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee-------ecCCCCcEEEEEEe----CCCC---cEEEEE
Q 018784 100 -EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE-------VGNSSGSIRTVAWL----HSDQ---TILSSC 164 (350)
Q Consensus 100 -~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~-------~~~~~~~v~~~~~~----~~~~---~~~~s~ 164 (350)
...+.|.+++.+.- .+++.|..+|.+.|.|++.+...... .......++++.|. ..|. .++..|
T Consensus 83 ~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 03467899998744 48899999999999999765433221 11234456777665 3333 567788
Q ss_pred eCCCeEEEEECC--C-Cc----eeEee-cCCCCeEEEE-EecC-----------------C----cEEEEEcCCcEEEEE
Q 018784 165 TDSGGVRLWDAR--S-GK----IVQTL-ETKSPVTSAE-VSRD-----------------G----RYITTADGSSVKFWD 214 (350)
Q Consensus 165 ~~dg~i~iwd~~--~-~~----~~~~~-~~~~~v~~~~-~~~~-----------------~----~~l~~~~~~~i~vwd 214 (350)
.+.|.+.+|.+- . +. ..... ....++..+. ++.+ + -+++..+...+|++.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~ 241 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFK 241 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEe
Confidence 888999999764 2 21 11111 2345555544 2211 1 255666778899999
Q ss_pred CCCcceeeeeecC-CCCceeEec----CCCCcEEEEecCCCeEEEEEcccCeeEEeecCCC----cCEEEEEEcCCCCEE
Q 018784 215 ANHFGLVKGYNMP-CNTESASLE----PKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHH----GPVHCVRFSPGGESY 285 (350)
Q Consensus 215 ~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~----~~v~~l~~sp~~~~l 285 (350)
..+.+......-. .....+.+. ...+..|++=..+|.|++|.+-..+++....... ..+....++++|..+
T Consensus 242 ~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 242 PPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred CCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence 8876655433311 111122221 1235667777889999999998888876665432 234556778888877
Q ss_pred EEecCC--CcEEEecC
Q 018784 286 ASGSED--GTIRIWQT 299 (350)
Q Consensus 286 asgs~D--g~v~vw~~ 299 (350)
+-.|.. ..+.+|..
T Consensus 322 ~~~gpsE~~l~sv~~~ 337 (395)
T PF08596_consen 322 YWTGPSEIQLFSVWGE 337 (395)
T ss_dssp EE-SSSEEEEEEEES-
T ss_pred EEeCcccEEEEEEEcc
Confidence 654433 23455543
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.57 E-value=0.0059 Score=56.75 Aligned_cols=148 Identities=21% Similarity=0.284 Sum_probs=81.2
Q ss_pred eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCc
Q 018784 139 REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHF 218 (350)
Q Consensus 139 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~ 218 (350)
+..+...-.+..+.++|.+. +++.++ ||.-.++.....+.... +.....+|.+.+++++......|.++.--+.
T Consensus 26 k~lg~~~~~p~~ls~npngr-~v~V~g-~geY~iyt~~~~r~k~~----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGR-FVLVCG-DGEYEIYTALAWRNKAF----GSGLSFVWSSRNRYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSS-EEEEEE-TTEEEEEETTTTEEEEE----EE-SEEEE-TSSEEEEE-TTS-EEEEETTEE
T ss_pred ccCCCCCcCCeeEEECCCCC-EEEEEc-CCEEEEEEccCCccccc----CceeEEEEecCccEEEEECCCeEEEEEcCcc
Confidence 34445555577888876555 444454 47777777443333222 3345677888888887777788999733222
Q ss_pred ceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784 219 GLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~ 298 (350)
...+.+..+.. .-.+.. |.+|...+.+ .|.+||+.+++.++.+... +|..+.|++++.++|-.+.+ .+.|++
T Consensus 100 ~~~k~i~~~~~--~~~If~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 100 EVVKSIKLPFS--VEKIFG--GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp -TT-----SS---EEEEE---SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred ccceEEcCCcc--cceEEc--CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 22223333321 111222 6777776655 8999999999999887643 38999999999999888766 788877
Q ss_pred CC
Q 018784 299 TN 300 (350)
Q Consensus 299 ~~ 300 (350)
.+
T Consensus 172 ~~ 173 (443)
T PF04053_consen 172 YN 173 (443)
T ss_dssp E-
T ss_pred ec
Confidence 54
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.076 Score=48.79 Aligned_cols=214 Identities=13% Similarity=0.116 Sum_probs=139.1
Q ss_pred EEEECCCCc-EEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeC---CCeEEEEECCCCCCCCeee
Q 018784 66 SCCLDANAL-FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGF---EKILRIFDLNRPDAPPREV 141 (350)
Q Consensus 66 ~v~~~~~~~-~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~---d~~v~vwd~~~~~~~~~~~ 141 (350)
.+++++.+. ..+....+..|.+.|..+........-......++++|+++.++.+.. ++++.+.|..+...... .
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~-~ 156 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT-I 156 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE-E
Confidence 556777666 666667789999999877777776655557889999999988877655 68888888765443333 2
Q ss_pred cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeE-e----ecCCCCeEEEEEecCCcEEEEEcC----CcEEE
Q 018784 142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ-T----LETKSPVTSAEVSRDGRYITTADG----SSVKF 212 (350)
Q Consensus 142 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~-~----~~~~~~v~~~~~~~~~~~l~~~~~----~~i~v 212 (350)
..... ...+++.+.+..++++-..++.|.+.|........ . ......-..+.++++|..+....+ +.+..
T Consensus 157 ~vG~~-P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~ 235 (381)
T COG3391 157 PVGNT-PTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK 235 (381)
T ss_pred ecCCC-cceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence 21112 26778887777777777788999999977665553 1 222233456789999986655432 47888
Q ss_pred EECCCcceeee-eecCC-CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCC---CcCEEEEEEcCC
Q 018784 213 WDANHFGLVKG-YNMPC-NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGH---HGPVHCVRFSPG 281 (350)
Q Consensus 213 wd~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h---~~~v~~l~~sp~ 281 (350)
.|..+...... ..... ........|......+.-...+.+.+.|..+.......... ...+..+++.+.
T Consensus 236 id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 236 IDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred EeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 88887665543 22222 23445555643344444455688999998887766554322 234566666654
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.08 Score=48.63 Aligned_cols=255 Identities=15% Similarity=0.162 Sum_probs=150.4
Q ss_pred eeEeeCCCCceeeeccCccCCeEEEEECCCCc-E-EEEeeCCCeEEEeeCCCCCeeeeeecc-ccEeEEEEcCCCCeEE-
Q 018784 43 PMLRNGETGDWIGTFEGHKGAVWSCCLDANAL-F-SASGSADFTAKLWDALTGDEKHSFEHK-HIVRACAFSEDTHLLL- 118 (350)
Q Consensus 43 v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~-~-l~s~s~Dg~v~vWd~~~~~~~~~~~h~-~~V~~~~~~~~~~~l~- 118 (350)
+.+++..+.+....+.-+. ....+...+++. . .+....+ .+..-+...........-. .....++.++.+..++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~-~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSN-DVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCc-eeeecccccceeeeeccCCCccccceeeCCCCCeEEE
Confidence 4444444444433333222 223456666663 2 2333333 5555554422111111111 3356778888887554
Q ss_pred EeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe--CCCeEEEEECCCCceeEeecCC-CCeEEEEE
Q 018784 119 TGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT--DSGGVRLWDARSGKIVQTLETK-SPVTSAEV 195 (350)
Q Consensus 119 sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~--~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~ 195 (350)
....+..|.+.|............ ......+++.+.++.+.++-. .++++.+.|..+.+........ .+ ..+++
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~v--G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~ 167 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPV--GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAV 167 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeee--ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEE
Confidence 445568999999654332221111 125567788887777777766 4689999999999888775543 34 78999
Q ss_pred ecCCcEEEEEc--CCcEEEEECCCcceee-----eeecCCCCceeEecCCCCcEEEEecCC--CeEEEEEcccCeeEEee
Q 018784 196 SRDGRYITTAD--GSSVKFWDANHFGLVK-----GYNMPCNTESASLEPKLGNIFIAGGED--MWVHVFDFHTGEQIGCN 266 (350)
Q Consensus 196 ~~~~~~l~~~~--~~~i~vwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~sg~~d--~~i~v~d~~~~~~~~~~ 266 (350)
+|+|..+...+ ++.|.+.|.......+ .......+....+.+.....+++.... +.+...|..++......
T Consensus 168 ~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~ 247 (381)
T COG3391 168 DPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATD 247 (381)
T ss_pred CCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEec
Confidence 99998665544 7889999977655443 112222334455555433344444443 68888888887766542
Q ss_pred c--CCCcCEEEEEEcCCCCEEEEe-cCCCcEEEecCCCCC
Q 018784 267 K--GHHGPVHCVRFSPGGESYASG-SEDGTIRIWQTNPPN 303 (350)
Q Consensus 267 ~--~h~~~v~~l~~sp~~~~lasg-s~Dg~v~vw~~~~~~ 303 (350)
. +-. ....+.++|+|..+... +..+.+.+-|.....
T Consensus 248 ~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 248 LPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred cccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 1 222 45678999999887665 445788888876543
No 356
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.49 E-value=0.023 Score=54.87 Aligned_cols=218 Identities=19% Similarity=0.216 Sum_probs=113.9
Q ss_pred CCCcEEEEeeCC------CeEEEeeCCCCCeee--eeeccccEeEEEEcCCCCeEEEeeCC------CeEEEEECCCCCC
Q 018784 71 ANALFSASGSAD------FTAKLWDALTGDEKH--SFEHKHIVRACAFSEDTHLLLTGGFE------KILRIFDLNRPDA 136 (350)
Q Consensus 71 ~~~~~l~s~s~D------g~v~vWd~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~sg~~d------~~v~vwd~~~~~~ 136 (350)
..+.+++.||.+ .++..+|..++.-.. .+..+....+++.. ++.+.++||.| .++..||....+.
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 345566777777 467788877663222 22233333344444 44677888888 3467778765442
Q ss_pred CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCC-----eEEEEECCCCceeEeecCCCCeEEEE-EecCCcEEEE-EcC--
Q 018784 137 PPREVGNSSGSIRTVAWLHSDQTILSSCTDSG-----GVRLWDARSGKIVQTLETKSPVTSAE-VSRDGRYITT-ADG-- 207 (350)
Q Consensus 137 ~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~-~~~-- 207 (350)
...........-..++ .-++.+.+.||.|| ++..||.++.+=-............. ..-+|++.+. +.+
T Consensus 362 ~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred eccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCC
Confidence 2111111111111122 22677888888885 47788887654211111111222222 2235555444 322
Q ss_pred ----CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCC-----eEEEEEcccCe--eEEeecCCCcCEEEE
Q 018784 208 ----SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDM-----WVHVFDFHTGE--QIGCNKGHHGPVHCV 276 (350)
Q Consensus 208 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~-----~i~v~d~~~~~--~~~~~~~h~~~v~~l 276 (350)
..+..||..+......-.+............++.+++.|+.|+ +|..||..+.+ .+.........+..+
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~ 519 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVV 519 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEE
Confidence 3588899887655443333333222223333578999999876 36778876533 332222223333333
Q ss_pred EEcCCCCEEEEecCCCc
Q 018784 277 RFSPGGESYASGSEDGT 293 (350)
Q Consensus 277 ~~sp~~~~lasgs~Dg~ 293 (350)
.. ++..++.|+.||.
T Consensus 520 ~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 520 VL--GGKLYAVGGFDGN 534 (571)
T ss_pred EE--CCEEEEEecccCc
Confidence 33 5677889998874
No 357
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.47 E-value=0.053 Score=48.55 Aligned_cols=207 Identities=18% Similarity=0.267 Sum_probs=112.0
Q ss_pred eEEEeeCCCCCeeeee--eccccEeE---EEEcCC----CCeEEEeeC----------CCeEEEEECCCC-----CCCCe
Q 018784 84 TAKLWDALTGDEKHSF--EHKHIVRA---CAFSED----THLLLTGGF----------EKILRIFDLNRP-----DAPPR 139 (350)
Q Consensus 84 ~v~vWd~~~~~~~~~~--~h~~~V~~---~~~~~~----~~~l~sg~~----------d~~v~vwd~~~~-----~~~~~ 139 (350)
.|++.|..+.+.+..+ ...+.+.+ +.|..+ ..+|+.|.. .|.|.++++.+. .....
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 5788888777765544 33344444 444443 466776642 288999999763 11111
Q ss_pred eecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc-eeEeec--CCCCeEEEEEecCCcEEEEEc-CCcEEEE--
Q 018784 140 EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-IVQTLE--TKSPVTSAEVSRDGRYITTAD-GSSVKFW-- 213 (350)
Q Consensus 140 ~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~-~~~~~~--~~~~v~~~~~~~~~~~l~~~~-~~~i~vw-- 213 (350)
......+.|++++-. ++.++++.+ +.|.+|++...+ ...... .+..+.++.... .+++.++ -..+.++
T Consensus 83 ~~~~~~g~V~ai~~~--~~~lv~~~g--~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~--~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF--NGRLVVAVG--NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFK--NYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEESS-EEEEEEE--TTEEEEEET--TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEET--TEEEEEESSSSEEEEEE
T ss_pred EEEeecCcceEhhhh--CCEEEEeec--CEEEEEEccCcccchhhheecceEEEEEEeccc--cEEEEEEcccCEEEEEE
Confidence 223457889999876 445555443 689999998776 443333 344566665553 3555554 4555554
Q ss_pred ECCCcceee--eeecCCCCceeEecCCCCcEEEEecCCCeEEEEEccc-------Ce--eEEeecCC-CcCEEEE---EE
Q 018784 214 DANHFGLVK--GYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT-------GE--QIGCNKGH-HGPVHCV---RF 278 (350)
Q Consensus 214 d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~-------~~--~~~~~~~h-~~~v~~l---~~ 278 (350)
+........ .-..+.....+.+-... +.++.+..+|.+.++.... +. ......-| ...|+++ ++
T Consensus 157 ~~~~~~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 157 DEENNKLILVARDYQPRWVTAAEFLVDE-DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp ETTTE-EEEEEEESS-BEEEEEEEE-SS-SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred EccCCEEEEEEecCCCccEEEEEEecCC-cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 553322221 11112222333343233 5899999999999998752 22 22222222 4567777 55
Q ss_pred cC--CC------CEEEEecCCCcEEEe
Q 018784 279 SP--GG------ESYASGSEDGTIRIW 297 (350)
Q Consensus 279 sp--~~------~~lasgs~Dg~v~vw 297 (350)
.| .+ ..++-++.+|.|.+.
T Consensus 236 ~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp S--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eecCCCCcccccceEEEEecCCEEEEE
Confidence 55 22 247778889988843
No 358
>PHA02713 hypothetical protein; Provisional
Probab=97.46 E-value=0.012 Score=56.90 Aligned_cols=214 Identities=11% Similarity=0.006 Sum_probs=101.6
Q ss_pred CeeEeeCCCCceee--eccCccCCeEEEEECCCCcEEEEeeCC------CeEEEeeCCCCCeee--eeeccccEeEEEEc
Q 018784 42 SPMLRNGETGDWIG--TFEGHKGAVWSCCLDANALFSASGSAD------FTAKLWDALTGDEKH--SFEHKHIVRACAFS 111 (350)
Q Consensus 42 ~v~iw~~~~~~~~~--~l~gH~~~V~~v~~~~~~~~l~s~s~D------g~v~vWd~~~~~~~~--~~~h~~~V~~~~~~ 111 (350)
.+..||..+.++.. .+...... .+++. .++.+.+.||.+ ..+..+|..+..-.. .+.....-.++ ..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~-~~ 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSL-AV 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeE-EE
Confidence 46778888877653 22211111 12222 356666777754 346677766553211 11111111112 22
Q ss_pred CCCCeEEEeeCCC-----eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC-------------------
Q 018784 112 EDTHLLLTGGFEK-----ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS------------------- 167 (350)
Q Consensus 112 ~~~~~l~sg~~d~-----~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d------------------- 167 (350)
-++++.+.||.++ ++..||..+..............-.+++. -++.+.+.|+.+
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~ 427 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED 427 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence 3566777787653 47889876532211000001000011111 246666666654
Q ss_pred ----CeEEEEECCCCc--eeEeecCCCCeEEEEEecCCcEEEE-EcC------CcEEEEECCC-cceeeeeecCCCCcee
Q 018784 168 ----GGVRLWDARSGK--IVQTLETKSPVTSAEVSRDGRYITT-ADG------SSVKFWDANH-FGLVKGYNMPCNTESA 233 (350)
Q Consensus 168 ----g~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~-~~~------~~i~vwd~~~-~~~~~~~~~~~~~~~~ 233 (350)
.++..||+++.+ .+..+.... .......-++++.+. +.+ ..+..||..+ .+-...-.++......
T Consensus 428 ~~~~~~ve~YDP~td~W~~v~~m~~~r-~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~ 506 (557)
T PHA02713 428 THSSNKVIRYDTVNNIWETLPNFWTGT-IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL 506 (557)
T ss_pred ccccceEEEECCCCCeEeecCCCCccc-ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc
Confidence 247778877653 122221111 111122334554443 322 2467899886 3433323333333223
Q ss_pred EecCCCCcEEEEecCCC--eEEEEEcccCe
Q 018784 234 SLEPKLGNIFIAGGEDM--WVHVFDFHTGE 261 (350)
Q Consensus 234 ~~~~~~~~~l~sg~~d~--~i~v~d~~~~~ 261 (350)
....-++.+++.|+.++ .+..||..+.+
T Consensus 507 ~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 507 HTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eeEEECCEEEEEeeecceeehhhcCccccc
Confidence 22233578999999888 67777766543
No 359
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.0061 Score=57.72 Aligned_cols=120 Identities=21% Similarity=0.225 Sum_probs=88.4
Q ss_pred ccC-ccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee--ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCC
Q 018784 57 FEG-HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE--HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNR 133 (350)
Q Consensus 57 l~g-H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~--h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~ 133 (350)
+.+ |...|.=-+++..+.+++-|+.-|.+.+++-..+..+..-+ ....+..+..+++..++|.|+..+.|.++.+..
T Consensus 28 ~~~~~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 28 QPGFFPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred ccccCcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence 444 44555555678889999999999999999987766444332 334556677899999999999999999998876
Q ss_pred CCCCCe-----eecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC
Q 018784 134 PDAPPR-----EVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177 (350)
Q Consensus 134 ~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~ 177 (350)
...+.. ....|+..|++++|++ +...+.+|..-|+|.+-.+.+
T Consensus 108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 108 ELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEech
Confidence 322211 1234688999999986 455677888889999887776
No 360
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.44 E-value=0.099 Score=48.61 Aligned_cols=233 Identities=15% Similarity=0.142 Sum_probs=115.9
Q ss_pred ccCCCccEEEEE-eCCCC----eeEeeCCCCceeee-ccCccCCeEEEEECCCCcEEEEeeCC-----------CeEEEe
Q 018784 26 PITPDGFFLVSA-SKDSS----PMLRNGETGDWIGT-FEGHKGAVWSCCLDANALFSASGSAD-----------FTAKLW 88 (350)
Q Consensus 26 ~~s~dg~~lasg-s~d~~----v~iw~~~~~~~~~~-l~gH~~~V~~v~~~~~~~~l~s~s~D-----------g~v~vW 88 (350)
.++|||++||-+ +..|. +++.|+++++.+.. +..- . -..+.|.+++..|+-...| ..|+.|
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~ 207 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-K-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH 207 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-E-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-c-cceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence 355699888744 44444 89999999977653 2221 1 1238999997765444333 337888
Q ss_pred eCCCCCee--eeeec--ccc-EeEEEEcCCCCeEEEee---CC-CeEEEEECCCC---CCCCeeec-CCCCcEEEEEEeC
Q 018784 89 DALTGDEK--HSFEH--KHI-VRACAFSEDTHLLLTGG---FE-KILRIFDLNRP---DAPPREVG-NSSGSIRTVAWLH 155 (350)
Q Consensus 89 d~~~~~~~--~~~~h--~~~-V~~~~~~~~~~~l~sg~---~d-~~v~vwd~~~~---~~~~~~~~-~~~~~v~~~~~~~ 155 (350)
.+.+.... ..+.. ... ...+..++++++|+..+ .+ ..+.+.++... ......+. ...+....+...
T Consensus 208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~- 286 (414)
T PF02897_consen 208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH- 286 (414)
T ss_dssp ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-
T ss_pred ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-
Confidence 88776533 33432 223 56788899999876432 22 44677787653 22233332 233444444433
Q ss_pred CCCcEE-EEE--eCCCeEEEEECCCCce---eEeecC-CC--CeEEEEEecCCcEEEEEcCC--cEEEEECCCcceeeee
Q 018784 156 SDQTIL-SSC--TDSGGVRLWDARSGKI---VQTLET-KS--PVTSAEVSRDGRYITTADGS--SVKFWDANHFGLVKGY 224 (350)
Q Consensus 156 ~~~~~~-~s~--~~dg~i~iwd~~~~~~---~~~~~~-~~--~v~~~~~~~~~~~l~~~~~~--~i~vwd~~~~~~~~~~ 224 (350)
++.++ .+. ...+.|.-.++.+... ...+.. .. .+..+....+..++..-.++ .|+++|+.........
T Consensus 287 -~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~ 365 (414)
T PF02897_consen 287 -GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREI 365 (414)
T ss_dssp -TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEE
T ss_pred -CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeee
Confidence 34333 332 1225666677766542 212222 22 24444443332222223343 6899999833444444
Q ss_pred ecCCCCceeEe--cCCCCcEEEEecC---CCeEEEEEcccCee
Q 018784 225 NMPCNTESASL--EPKLGNIFIAGGE---DMWVHVFDFHTGEQ 262 (350)
Q Consensus 225 ~~~~~~~~~~~--~~~~~~~l~sg~~---d~~i~v~d~~~~~~ 262 (350)
..+........ ......+++.-+. -..++.||+.+++.
T Consensus 366 ~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 366 PLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp ESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred cCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 44433321222 2222333333222 34667777776654
No 361
>PHA02713 hypothetical protein; Provisional
Probab=97.31 E-value=0.03 Score=54.11 Aligned_cols=211 Identities=11% Similarity=0.081 Sum_probs=99.5
Q ss_pred eEEEeeCCCCCeee--eeeccccEeEEEEcCCCCeEEEeeCC------CeEEEEECCCCCCCCeeecCCCCcEEEEEEeC
Q 018784 84 TAKLWDALTGDEKH--SFEHKHIVRACAFSEDTHLLLTGGFE------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLH 155 (350)
Q Consensus 84 ~v~vWd~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~sg~~d------~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 155 (350)
.+..||..+++-.. .+.....-.+++. -++.+.+.||.+ ..+..||+.+............-.-.+++.
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-- 349 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-- 349 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--
Confidence 56777876654221 1111111112222 356667777754 346778876432211000000000112222
Q ss_pred CCCcEEEEEeCCC-----eEEEEECCCCc--eeEeecCCCCeEEEEEecCCcEEEEE-cC--------------------
Q 018784 156 SDQTILSSCTDSG-----GVRLWDARSGK--IVQTLETKSPVTSAEVSRDGRYITTA-DG-------------------- 207 (350)
Q Consensus 156 ~~~~~~~s~~~dg-----~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~~-------------------- 207 (350)
-++.+.+.||.++ ++..||+++.+ .+..+.....-..+ ..-++++.+.+ .+
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~-~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGM-CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccE-EEECCEEEEEeCCCcccccccccccccccccccc
Confidence 2566767676653 48889987653 11111111111112 22345554433 22
Q ss_pred ---CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCC------CeEEEEEccc---CeeEEeecCCCcCEEE
Q 018784 208 ---SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED------MWVHVFDFHT---GEQIGCNKGHHGPVHC 275 (350)
Q Consensus 208 ---~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d------~~i~v~d~~~---~~~~~~~~~h~~~v~~ 275 (350)
..+..||..+..-...-.++..........-.+++++.|+.+ ..+..||..+ ...+..+.........
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~ 508 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT 508 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence 247778877654332222222211112222247888888864 2467898775 3344433332222333
Q ss_pred EEEcCCCCEEEEecCCC--cEEEecCC
Q 018784 276 VRFSPGGESYASGSEDG--TIRIWQTN 300 (350)
Q Consensus 276 l~~sp~~~~lasgs~Dg--~v~vw~~~ 300 (350)
+.+ ++++++.|+.|+ .+-.||..
T Consensus 509 ~~~--~~~iyv~Gg~~~~~~~e~yd~~ 533 (557)
T PHA02713 509 ILH--DNTIMMLHCYESYMLQDTFNVY 533 (557)
T ss_pred EEE--CCEEEEEeeecceeehhhcCcc
Confidence 334 678899999998 55555543
No 362
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.29 E-value=0.078 Score=45.30 Aligned_cols=191 Identities=14% Similarity=0.182 Sum_probs=104.1
Q ss_pred ccEeEEEEcCCCC-eEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc--
Q 018784 103 HIVRACAFSEDTH-LLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK-- 179 (350)
Q Consensus 103 ~~V~~~~~~~~~~-~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~-- 179 (350)
..+..++|.|+.. ++++....+.|...++. ++...+......+-.-.+++.. ++.++++--.++.+.+.++....
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----TT
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccccc
Confidence 3489999999755 55566667777777764 3332222223345577788764 45666666668899998883321
Q ss_pred ----eeEeec------CCCCeEEEEEecCCc-EEEEEcCCcEEEEECCC---cceeeee-----e----cCCCCceeEec
Q 018784 180 ----IVQTLE------TKSPVTSAEVSRDGR-YITTADGSSVKFWDANH---FGLVKGY-----N----MPCNTESASLE 236 (350)
Q Consensus 180 ----~~~~~~------~~~~v~~~~~~~~~~-~l~~~~~~~i~vwd~~~---~~~~~~~-----~----~~~~~~~~~~~ 236 (350)
....+. .+..+..+++++.+. ++++-...-.++|..+. ....... . .-.....+.+.
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence 112222 234688999999754 44444444555655443 1111000 0 11234556778
Q ss_pred CCCCcEEEEecCCCeEEEEEcccCeeEEeec---CCC------cCEEEEEEcCCCCEEEEecCCCcEEEe
Q 018784 237 PKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK---GHH------GPVHCVRFSPGGESYASGSEDGTIRIW 297 (350)
Q Consensus 237 ~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~---~h~------~~v~~l~~sp~~~~lasgs~Dg~v~vw 297 (350)
+..+++++.....+.|..+| .+|+.+..+. +.. .....|+|.++|+++++ |+-+..+++
T Consensus 180 p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 180 PRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp TTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred CCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 88899999999999999999 6677655432 211 24788999999976654 455555544
No 363
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.28 E-value=0.093 Score=44.80 Aligned_cols=190 Identities=17% Similarity=0.210 Sum_probs=111.5
Q ss_pred eeeeeccc--cEeEEEEcCCCCeEEEeeCCC--eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEE
Q 018784 96 KHSFEHKH--IVRACAFSEDTHLLLTGGFEK--ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVR 171 (350)
Q Consensus 96 ~~~~~h~~--~V~~~~~~~~~~~l~sg~~d~--~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~ 171 (350)
+.++.|.. ....+.|..++.++-+.|.-| .|+.+|+.+++..........---..++.. ++.+..---.+++..
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEE
T ss_pred EEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEE
Confidence 44556653 457888877888888877655 689999987653322221111111223322 233433346778999
Q ss_pred EEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc-CCcEEEEECCCcceeeeeecCCCCcee----EecCCCCcEEEEe
Q 018784 172 LWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GSSVKFWDANHFGLVKGYNMPCNTESA----SLEPKLGNIFIAG 246 (350)
Q Consensus 172 iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~sg 246 (350)
+||..+.+.+.++.....=..++ .+++.|..++ ...+.++|..+++..+..........+ -+.--+|.++|=-
T Consensus 114 ~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANV 191 (264)
T PF05096_consen 114 VYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANV 191 (264)
T ss_dssp EEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEE
T ss_pred EEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEe
Confidence 99999999888887766555555 4455555554 468999999998887776654322111 1111246777777
Q ss_pred cCCCeEEEEEcccCeeEEeec------------CC---CcCEEEEEEcCCC-CEEEEec
Q 018784 247 GEDMWVHVFDFHTGEQIGCNK------------GH---HGPVHCVRFSPGG-ESYASGS 289 (350)
Q Consensus 247 ~~d~~i~v~d~~~~~~~~~~~------------~h---~~~v~~l~~sp~~-~~lasgs 289 (350)
.....|...|..+|+.+..+. .+ ..-.+.+++.|.. ++++||-
T Consensus 192 W~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 192 WQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp TTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 778888889999988765431 01 2346899998765 4566764
No 364
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.25 E-value=0.17 Score=47.11 Aligned_cols=239 Identities=14% Similarity=0.087 Sum_probs=116.8
Q ss_pred eEEEEECCCCcEEE-EeeCC----CeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeC-----------CCeE
Q 018784 64 VWSCCLDANALFSA-SGSAD----FTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGF-----------EKIL 126 (350)
Q Consensus 64 V~~v~~~~~~~~l~-s~s~D----g~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~-----------d~~v 126 (350)
+....++|+++++| +-+.. ..+++.|+.+++.+... .... ...+.|.++++.|+-... ...|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 34567899999776 33333 45999999998654432 2221 223899999877654432 2347
Q ss_pred EEEECCCCCCCCee-e-cCCCCc-EEEEEEeCCCCcEEEEEeCC---CeEEEEECCCC-----ceeEeecCCCCeEEEEE
Q 018784 127 RIFDLNRPDAPPRE-V-GNSSGS-IRTVAWLHSDQTILSSCTDS---GGVRLWDARSG-----KIVQTLETKSPVTSAEV 195 (350)
Q Consensus 127 ~vwd~~~~~~~~~~-~-~~~~~~-v~~~~~~~~~~~~~~s~~~d---g~i~iwd~~~~-----~~~~~~~~~~~v~~~~~ 195 (350)
..|.+.++...-.. . ...... ...+..++++..+++..... ..+.+.|+..+ ...........+....-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 78888755332111 1 222222 56677776666666544433 34888888764 22222222223332222
Q ss_pred ecCCcEEEEEc----CCcEEEEECCCcce--eeeeecCCCC--ceeEecCCCCcEEEEecCCC--eEEEEEcccCeeEEe
Q 018784 196 SRDGRYITTAD----GSSVKFWDANHFGL--VKGYNMPCNT--ESASLEPKLGNIFIAGGEDM--WVHVFDFHTGEQIGC 265 (350)
Q Consensus 196 ~~~~~~l~~~~----~~~i~vwd~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~l~sg~~d~--~i~v~d~~~~~~~~~ 265 (350)
..++.+++.++ .+.|.-.++..... -...-.+... ....+....+.+++.--.++ .|+++++..+.....
T Consensus 285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~ 364 (414)
T PF02897_consen 285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESRE 364 (414)
T ss_dssp EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEE
T ss_pred ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEee
Confidence 23444544433 24565566665542 1111111111 12222222345555555555 588889883333333
Q ss_pred ec-CCCcCEEEEEEcCCCCE-EEE-ecC--CCcEEEecCCCCC
Q 018784 266 NK-GHHGPVHCVRFSPGGES-YAS-GSE--DGTIRIWQTNPPN 303 (350)
Q Consensus 266 ~~-~h~~~v~~l~~sp~~~~-las-gs~--Dg~v~vw~~~~~~ 303 (350)
+. .-.+.|..+...++... +++ .|. -.+++.||+...+
T Consensus 365 ~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 365 IPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred ecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 32 22334566655555443 222 332 3456666665443
No 365
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.061 Score=49.86 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=27.2
Q ss_pred CcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 270 HGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 270 ~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
.+++..|+.||+++++|.-..+|.+.+...+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 3579999999999999999999999888754
No 366
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.18 E-value=0.00099 Score=54.60 Aligned_cols=139 Identities=12% Similarity=0.094 Sum_probs=85.3
Q ss_pred EeCCCeEEEEECCCCceeEee-cCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeee-eecCCCCceeE-ecCCCC
Q 018784 164 CTDSGGVRLWDARSGKIVQTL-ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKG-YNMPCNTESAS-LEPKLG 240 (350)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~-~~~~~~~~~~~-~~~~~~ 240 (350)
-+.|+.|+-++++..+.-..- .....- .....-+.++++.+.++.|.+|....+..... +........+. ..-..+
T Consensus 36 ~sa~~~v~~~~~~k~k~s~rse~~~~e~-~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~ 114 (238)
T KOG2444|consen 36 TSADGLVRERKVRKHKESCRSERFIDEG-QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDS 114 (238)
T ss_pred ccCCcccccchhhhhhhhhhhhhhhhcc-eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccccccc
Confidence 355677777776643321110 011111 11122234566777889999888764322111 11111111122 222345
Q ss_pred cEEEEecCCCeEEEEEcccCeeEEeecCCC-cCEEEEEEcCCCCEEEEe--cCCCcEEEecCCCCC
Q 018784 241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHH-GPVHCVRFSPGGESYASG--SEDGTIRIWQTNPPN 303 (350)
Q Consensus 241 ~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~-~~v~~l~~sp~~~~lasg--s~Dg~v~vw~~~~~~ 303 (350)
.+..++++|+.||.|+....+.+.....|. .++..+..+..+.++++. |.|..++.|++.+..
T Consensus 115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 115 SLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred ceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 689999999999999999888887777787 677777777788889988 999999999986443
No 367
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.13 E-value=0.068 Score=49.60 Aligned_cols=179 Identities=17% Similarity=0.176 Sum_probs=100.6
Q ss_pred ccEeEEEEcCCCCeEEEee---CC-CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCe--EEEEECC
Q 018784 103 HIVRACAFSEDTHLLLTGG---FE-KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGG--VRLWDAR 176 (350)
Q Consensus 103 ~~V~~~~~~~~~~~l~sg~---~d-~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~--i~iwd~~ 176 (350)
..+..-+|+|+++.++-.. .. ..+.++++..+.... .....+.-....|+|++.+++.+...|+. |.+.|+.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV--ILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce--eeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 4466678899887765432 12 358888887654432 22344445566788888888888888876 5555776
Q ss_pred CCceeEeecCCC-CeEEEEEecCCcEEEEEc--CC--cEEEEECCCcceeeeeecCCCCc-eeEecCCCCcEEEEec-CC
Q 018784 177 SGKIVQTLETKS-PVTSAEVSRDGRYITTAD--GS--SVKFWDANHFGLVKGYNMPCNTE-SASLEPKLGNIFIAGG-ED 249 (350)
Q Consensus 177 ~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~--~~--~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~sg~-~d 249 (350)
++.. ..+.... .-..-.|+|||+.++-.+ +| .|.+++...... ..++...... ...+++ ++++++..+ .+
T Consensus 271 ~~~~-~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~Sp-dG~~i~~~~~~~ 347 (425)
T COG0823 271 GKNL-PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSP-DGDKIVFESSSG 347 (425)
T ss_pred CCcc-eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCC-CCCEEEEEeccC
Confidence 6653 3344322 223556899999876443 33 477777765543 2333322222 333344 465555444 34
Q ss_pred Ce--EEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEE
Q 018784 250 MW--VHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYAS 287 (350)
Q Consensus 250 ~~--i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~las 287 (350)
+. |.+.|+.++..+..+. +......-+|.|++..+..
T Consensus 348 g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 348 GQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMF 386 (425)
T ss_pred CceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEE
Confidence 44 6666766655332222 2222334456677666543
No 368
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.12 E-value=0.016 Score=57.21 Aligned_cols=137 Identities=16% Similarity=0.203 Sum_probs=87.8
Q ss_pred EEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCC-------CCeEEEeeCCCeEEEEECCCCCCCCeeec----CC
Q 018784 76 SASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSED-------THLLLTGGFEKILRIFDLNRPDAPPREVG----NS 144 (350)
Q Consensus 76 l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~-------~~~l~sg~~d~~v~vwd~~~~~~~~~~~~----~~ 144 (350)
|........|.--|+++|+.+..+.-...+.-..|.|+ ....+.|-.+..+..||++-......... ..
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~ 576 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSS 576 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccccc
Confidence 33444567788889999998877753332223334443 23456677888899999874331111101 12
Q ss_pred CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCcee-EeecC-CCCeEEEEEecCCcEEEEEcCCcEEEEEC
Q 018784 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIV-QTLET-KSPVTSAEVSRDGRYITTADGSSVKFWDA 215 (350)
Q Consensus 145 ~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~-~~~~~-~~~v~~~~~~~~~~~l~~~~~~~i~vwd~ 215 (350)
.....+++-. ..-.++.|+.+|.||+|| +.|+.. ..+.. ..||..+.++.||+++++.....+-+++.
T Consensus 577 ~~~Fs~~aTt--~~G~iavgs~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 577 KNNFSCFATT--EDGYIAVGSNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred CCCceEEEec--CCceEEEEeCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 3344555433 333566788999999999 444332 23333 57999999999999999988888888885
No 369
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0033 Score=58.70 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=69.4
Q ss_pred eeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeE-EEEECCCCcEEEEeeCCCeEEEeeCCCCCeee
Q 018784 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVW-SCCLDANALFSASGSADFTAKLWDALTGDEKH 97 (350)
Q Consensus 19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~-~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~ 97 (350)
+.-+.++| .-.++|.+..+|.+-|.... .+.+.++.-|...++ +++|.|||+++|.|=.||+|++.|++++..+.
T Consensus 23 i~~~ewnP---~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 23 IKRIEWNP---KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred eEEEEEcC---ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 44455665 55699999999999988876 667778887777776 99999999999999999999999999887665
Q ss_pred e--eeccccEeEEEEc
Q 018784 98 S--FEHKHIVRACAFS 111 (350)
Q Consensus 98 ~--~~h~~~V~~~~~~ 111 (350)
. +.....|.++-|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 5 3333445555554
No 370
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0034 Score=58.62 Aligned_cols=75 Identities=11% Similarity=0.031 Sum_probs=61.4
Q ss_pred CCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee-ccccEe-EEEEcCCCCeEEEeeCCCeEEEEECCCCCCC
Q 018784 62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVR-ACAFSEDTHLLLTGGFEKILRIFDLNRPDAP 137 (350)
Q Consensus 62 ~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-h~~~V~-~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~ 137 (350)
-.|..+.|+|...++|.+-.+|.|-+..+. -+.+.++. +...|+ +++|.|||+.|+.|-.||+|++-|++++...
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 345677899999999999999988888776 45556665 555565 9999999999999999999999999876544
No 371
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.06 E-value=0.39 Score=47.85 Aligned_cols=275 Identities=13% Similarity=0.161 Sum_probs=141.5
Q ss_pred EEEecccCCCccEEEEEeCCCCeeEeeC--CCCceeeeccCc--cCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee
Q 018784 21 DLFYSPITPDGFFLVSASKDSSPMLRNG--ETGDWIGTFEGH--KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK 96 (350)
Q Consensus 21 ~~~~~~~s~dg~~lasgs~d~~v~iw~~--~~~~~~~~l~gH--~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~ 96 (350)
++-+..+..|+.+|.++..||.+..+.+ .+|...-.-+-| +.++.--.|+..+..-+=+..|+-..++-....-..
T Consensus 585 SIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~ 664 (1096)
T KOG1897|consen 585 SILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVY 664 (1096)
T ss_pred heeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEE
Confidence 4444555557889999999999876554 344332111111 233332334433332222334444444432211111
Q ss_pred eeeeccccEeEEEEcCC--CCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEE-------e--
Q 018784 97 HSFEHKHIVRACAFSED--THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSC-------T-- 165 (350)
Q Consensus 97 ~~~~h~~~V~~~~~~~~--~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~-------~-- 165 (350)
..++-+..-..+.|+.+ ...|+++. .+.+++..++.-+........-....+.+++-+....+.+.+ .
T Consensus 665 spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~ 743 (1096)
T KOG1897|consen 665 SPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYY 743 (1096)
T ss_pred eccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhc
Confidence 11221211223344332 23444443 446677766543222222222333344444432111111111 1
Q ss_pred -CC---CeEEEEECCCCceeEeecCC--C---CeEEEEEecC-CcEEEEEc-----------CCcEEEEECCCc---cee
Q 018784 166 -DS---GGVRLWDARSGKIVQTLETK--S---PVTSAEVSRD-GRYITTAD-----------GSSVKFWDANHF---GLV 221 (350)
Q Consensus 166 -~d---g~i~iwd~~~~~~~~~~~~~--~---~v~~~~~~~~-~~~l~~~~-----------~~~i~vwd~~~~---~~~ 221 (350)
.. ..++++|-++.+.+...+.. . .+.++.|..| +.+++.+. .|.|.++..... +.+
T Consensus 744 ~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v 823 (1096)
T KOG1897|consen 744 GEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELV 823 (1096)
T ss_pred CCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeee
Confidence 11 24778888777766554432 2 3455557765 55655442 355666655442 222
Q ss_pred eeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 222 KGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
..... .....++...+++++|. -...|++|++.+.+.++.-..|..++..+...-.+..++.|..=+.+.+-.++
T Consensus 824 ~e~~v--~Gav~aL~~fngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 824 AETVV--KGAVYALVEFNGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred eeeee--ccceeehhhhCCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEe
Confidence 22222 22233333344666654 45789999999998888778899999999999999999999887777665544
No 372
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.87 E-value=0.33 Score=43.85 Aligned_cols=271 Identities=18% Similarity=0.213 Sum_probs=121.2
Q ss_pred cccCCCcc-EEEEEeCCCC--eeEeeCCCCceeeeccCcc-CCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee
Q 018784 25 SPITPDGF-FLVSASKDSS--PMLRNGETGDWIGTFEGHK-GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE 100 (350)
Q Consensus 25 ~~~s~dg~-~lasgs~d~~--v~iw~~~~~~~~~~l~gH~-~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~ 100 (350)
+++++||+ +|..+..|+. +.+.|+++++.. .|..+. .......++++...++=-.....|+--|+.+.+....+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~-QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEIT-QLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE-E---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEE-ECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEE
Confidence 34667884 5555555666 455677888765 343332 222234566776665434455688888999988766655
Q ss_pred cc-ccEeEEEE--cCCCCeEEEee---CC-------------------CeEEEEECCCCCCCCeeecCCCCcEEEEEEeC
Q 018784 101 HK-HIVRACAF--SEDTHLLLTGG---FE-------------------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLH 155 (350)
Q Consensus 101 h~-~~V~~~~~--~~~~~~l~sg~---~d-------------------~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 155 (350)
-+ ..+-...| +.++..++-.- .| ..|.-.|+.+++. +.+......+.-+.|+|
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~--~~v~~~~~wlgH~~fsP 197 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGER--KVVFEDTDWLGHVQFSP 197 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--E--EEEEEESS-EEEEEEET
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCce--eEEEecCccccCcccCC
Confidence 33 33333444 34555543221 11 1122234443321 22222344566778888
Q ss_pred CCCcEEEEEeC---CC-eEEEEECCC-CceeEeecCCC---CeEEEEEecCCcEEE--EE-cC---CcEEEEECCCccee
Q 018784 156 SDQTILSSCTD---SG-GVRLWDARS-GKIVQTLETKS---PVTSAEVSRDGRYIT--TA-DG---SSVKFWDANHFGLV 221 (350)
Q Consensus 156 ~~~~~~~s~~~---dg-~i~iwd~~~-~~~~~~~~~~~---~v~~~~~~~~~~~l~--~~-~~---~~i~vwd~~~~~~~ 221 (350)
.+..+++=|-+ +. .-|||-+++ +.....+..+. .+..=-|.|||..+. .. .+ ..|.-+|+.+....
T Consensus 198 ~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 198 TDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp TEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred CCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 88887776643 22 247776543 33334443322 234445789987553 21 22 24666778776554
Q ss_pred eeeecCCCCceeEecCCCCcEEEEecCC----------------CeEEEEEcccCeeEE--e-------ecCCCc-CEEE
Q 018784 222 KGYNMPCNTESASLEPKLGNIFIAGGED----------------MWVHVFDFHTGEQIG--C-------NKGHHG-PVHC 275 (350)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~sg~~d----------------~~i~v~d~~~~~~~~--~-------~~~h~~-~v~~ 275 (350)
....++ ...-.....++.+++-=+.| ..|+++++..++... . +.++.. .=-.
T Consensus 278 ~~~~~p--~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPh 355 (386)
T PF14583_consen 278 RLMEMP--WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPH 355 (386)
T ss_dssp EEEEE---SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT---
T ss_pred EEEeCC--ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCC
Confidence 333332 11112223345665543332 267788887765431 1 111111 1145
Q ss_pred EEEcCCCCEE-EEecCCCcEEEecCC
Q 018784 276 VRFSPGGESY-ASGSEDGTIRIWQTN 300 (350)
Q Consensus 276 l~~sp~~~~l-asgs~Dg~v~vw~~~ 300 (350)
..|+||++.+ .++...|...||-+.
T Consensus 356 p~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 356 PSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp -EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred CccCCCCCEEEEECCCCCCccEEEEe
Confidence 7899999885 466678887777543
No 373
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.80 E-value=0.37 Score=44.36 Aligned_cols=193 Identities=15% Similarity=0.150 Sum_probs=101.6
Q ss_pred eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeee--ccC------ccCCeEEEEEC-----CCC---cEE
Q 018784 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGT--FEG------HKGAVWSCCLD-----ANA---LFS 76 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~--l~g------H~~~V~~v~~~-----~~~---~~l 76 (350)
+-..++|++++.| |-.++|.|..+|.+.|.|......+.. +.. ....|.++.|. .|+ ..+
T Consensus 83 ~~~~g~vtal~~S----~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKNS----DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE-----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEecC----CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 4558899999887 566899999999999999855555432 222 22346677664 344 467
Q ss_pred EEeeCCCeEEEeeCCC-CCeeee------e-eccccEeEEE-EcCC-C-------------------CeEEEeeCCCeEE
Q 018784 77 ASGSADFTAKLWDALT-GDEKHS------F-EHKHIVRACA-FSED-T-------------------HLLLTGGFEKILR 127 (350)
Q Consensus 77 ~s~s~Dg~v~vWd~~~-~~~~~~------~-~h~~~V~~~~-~~~~-~-------------------~~l~sg~~d~~v~ 127 (350)
..|-..|.+.+|.+.- ...... . .+.+.|..+. |+.+ | .-++....+..+|
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 7788889999998641 111111 1 2445555443 3211 1 2244445577899
Q ss_pred EEECCCCCCCCeeecCCCCcEEEEEEe----CCCCcEEEEEeCCCeEEEEECCCCceeEeecCCC-----CeEEEEEecC
Q 018784 128 IFDLNRPDAPPREVGNSSGSIRTVAWL----HSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-----PVTSAEVSRD 198 (350)
Q Consensus 128 vwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~v~~~~~~~~ 198 (350)
++.+.+.+...+.. ...-....+.+. ......|+.-..+|.|+++.+..-+.+..++... .+....++++
T Consensus 239 v~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~ 317 (395)
T PF08596_consen 239 VFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRN 317 (395)
T ss_dssp EE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TT
T ss_pred EEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCC
Confidence 99887654433333 111122223332 2245567777789999999999888877766532 2344567888
Q ss_pred CcEEEEEcCCcE
Q 018784 199 GRYITTADGSSV 210 (350)
Q Consensus 199 ~~~l~~~~~~~i 210 (350)
|.++.-.+...+
T Consensus 318 Gdi~~~~gpsE~ 329 (395)
T PF08596_consen 318 GDIFYWTGPSEI 329 (395)
T ss_dssp S-EEEE-SSSEE
T ss_pred CCEEEEeCcccE
Confidence 887765544443
No 374
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.38 Score=42.61 Aligned_cols=200 Identities=15% Similarity=0.142 Sum_probs=110.7
Q ss_pred EEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEE-EECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee------ccccE
Q 018784 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSC-CLDANALFSASGSADFTAKLWDALTGDEKHSFE------HKHIV 105 (350)
Q Consensus 33 ~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v-~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~------h~~~V 105 (350)
++.+--..+.+.-|+..+++.. .+.-. +.+.++ .+...+.++++ +..+.+++..++..+..+. .....
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~-~~~~p-~~~~~~~~~d~~g~Lv~~---~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ 113 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKR-VFPSP-GGFSSGALIDAGGRLIAC---EHGVRLLDPDTGGKITLLAEPEDGLPLNRP 113 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceE-EEECC-CCcccceeecCCCeEEEE---ccccEEEeccCCceeEEeccccCCCCcCCC
Confidence 5566666677788887766442 23222 222333 34444555443 5556667765554422221 12345
Q ss_pred eEEEEcCCCCeEEEeeC------C---CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECC
Q 018784 106 RACAFSEDTHLLLTGGF------E---KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176 (350)
Q Consensus 106 ~~~~~~~~~~~l~sg~~------d---~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~ 176 (350)
+.+...|+|.+-++... . ..=.+|-+.......+....+-.....++|++++..++++=+..+.|.-++..
T Consensus 114 ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 114 NDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred CceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 67778888876665333 0 11134444321222223233333456789998877777776666778877764
Q ss_pred C--C----ce-eEeec-CCCCeEEEEEecCCcEEEEEc-C-CcEEEEECCCcceeeeeecC-CCCceeEecCC
Q 018784 177 S--G----KI-VQTLE-TKSPVTSAEVSRDGRYITTAD-G-SSVKFWDANHFGLVKGYNMP-CNTESASLEPK 238 (350)
Q Consensus 177 ~--~----~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~-~-~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~ 238 (350)
. + +. ..... .....-.+++..+|.+.+++. + +.|.+|+.. ++.+..+.+| ....++.|-..
T Consensus 194 ~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 194 PATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGP 265 (307)
T ss_pred cccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCC
Confidence 2 1 11 11111 234455677788888875443 3 389999988 8888888888 44445555443
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.043 Score=50.66 Aligned_cols=141 Identities=15% Similarity=0.176 Sum_probs=93.8
Q ss_pred CcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCC-------eEEEeeCCCeEEEEECCCCCC-CCeeecCC
Q 018784 73 ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTH-------LLLTGGFEKILRIFDLNRPDA-PPREVGNS 144 (350)
Q Consensus 73 ~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~-------~l~sg~~d~~v~vwd~~~~~~-~~~~~~~~ 144 (350)
..++.++..-..+.--|++.|+.+..+.....|.-+.+.|+.+ .-+.|-.|..|.-||++-... .......+
T Consensus 346 nlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred ceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 3456677777788888999999888876555578888888653 223466788889999863222 11111111
Q ss_pred ----CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee-c-CCCCeEEEEEecCCcEEEEEcCCcEEEEECC
Q 018784 145 ----SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL-E-TKSPVTSAEVSRDGRYITTADGSSVKFWDAN 216 (350)
Q Consensus 145 ----~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~ 216 (350)
.....|.+- ...-.++.|+.+|.||+||- .++...+. . ...+|..+..+.+|+++.+..+.++-+.|+.
T Consensus 426 qy~~k~nFsc~aT--T~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 426 QYSTKNNFSCFAT--TESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred ccccccccceeee--cCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 122333332 23345677889999999995 55443333 2 2578999999999999999888888888753
No 376
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.52 E-value=0.7 Score=44.96 Aligned_cols=168 Identities=14% Similarity=0.129 Sum_probs=89.8
Q ss_pred CCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee------CCCeEEEeeCCCCCeeeeeeccccEeEEEEcCC
Q 018784 40 DSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS------ADFTAKLWDALTGDEKHSFEHKHIVRACAFSED 113 (350)
Q Consensus 40 d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s------~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~ 113 (350)
||.+.-.+...-.++.-.-+....+...++++++..+|-.- .|..-.+|=...+.....+........-.|+|+
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspD 407 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLD 407 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCC
Confidence 56655443322223222223334567888999998766443 354444553222222122222223677789999
Q ss_pred CCeEEEeeCC------------CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEE---EECCCC
Q 018784 114 THLLLTGGFE------------KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRL---WDARSG 178 (350)
Q Consensus 114 ~~~l~sg~~d------------~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~i---wd~~~~ 178 (350)
|..|++.... +.+.+.+++.+.... ...+.|..+.|++++.++++.. ++.|.+ -....|
T Consensus 408 G~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G 481 (591)
T PRK13616 408 ADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDG 481 (591)
T ss_pred CCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCC
Confidence 8877776432 222222343222111 3355799999998887777655 367777 343444
Q ss_pred c-ee---EeecC--CCCeEEEEEecCCcEEEEEcCCcEEEE
Q 018784 179 K-IV---QTLET--KSPVTSAEVSRDGRYITTADGSSVKFW 213 (350)
Q Consensus 179 ~-~~---~~~~~--~~~v~~~~~~~~~~~l~~~~~~~i~vw 213 (350)
. .+ ..+.. ...+.++.|..++.+++...+....+|
T Consensus 482 ~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~ 522 (591)
T PRK13616 482 QYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVW 522 (591)
T ss_pred ceeecccEEeecccCCccccceEecCCEEEEEecCCCCceE
Confidence 3 11 11211 223578899999998766554433344
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.51 E-value=0.38 Score=46.72 Aligned_cols=148 Identities=13% Similarity=0.081 Sum_probs=76.4
Q ss_pred ceeEEEecccCCCccEEEEEe------CCCCeeEeeCC-CCceeeeccCccCCeEEEEECCCCcEEEEeeCC-CeEEEe-
Q 018784 18 PVVDLFYSPITPDGFFLVSAS------KDSSPMLRNGE-TGDWIGTFEGHKGAVWSCCLDANALFSASGSAD-FTAKLW- 88 (350)
Q Consensus 18 ~v~~~~~~~~s~dg~~lasgs------~d~~v~iw~~~-~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D-g~v~vW- 88 (350)
.+...+.+ |||..+|..- .|..-.||-.. .+.....+.+. ....-.|+++|..+++.+.. ..+++.
T Consensus 351 ~vsspaiS---pdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 351 NITSAALS---RSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred CcccceEC---CCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 45555555 4887766554 35444555432 22222223332 25667899998766665422 223333
Q ss_pred ----------eCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEE---ECCCCCCCC---eeecC-CCCcEEEE
Q 018784 89 ----------DALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIF---DLNRPDAPP---REVGN-SSGSIRTV 151 (350)
Q Consensus 89 ----------d~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vw---d~~~~~~~~---~~~~~-~~~~v~~~ 151 (350)
++..+.... .....|..+.|+|||..++... ++.|.+= ....+.... ..... ....+.++
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l 502 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL 502 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence 332222111 2355799999999999887655 4666663 322222111 11222 23345788
Q ss_pred EEeCCCCcEEEEEeCCCeEEEEEC
Q 018784 152 AWLHSDQTILSSCTDSGGVRLWDA 175 (350)
Q Consensus 152 ~~~~~~~~~~~s~~~dg~i~iwd~ 175 (350)
.|...+. +++ +..++.-.+|.+
T Consensus 503 ~W~~~~~-L~V-~~~~~~~~v~~v 524 (591)
T PRK13616 503 DWRTGDS-LVV-GRSDPEHPVWYV 524 (591)
T ss_pred eEecCCE-EEE-EecCCCCceEEE
Confidence 8986655 333 333333444543
No 378
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.51 E-value=0.0065 Score=49.95 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=66.4
Q ss_pred EeeCCCeEEEeeCCCCCeeeeeeccccEeEE-EEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCC
Q 018784 78 SGSADFTAKLWDALTGDEKHSFEHKHIVRAC-AFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHS 156 (350)
Q Consensus 78 s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~-~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 156 (350)
..|.||.|+=.++...+.. ......+.+. ..---+..+++|+.++.|.+|..................+.++--.-.
T Consensus 35 ~~sa~~~v~~~~~~k~k~s--~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~ 112 (238)
T KOG2444|consen 35 ATSADGLVRERKVRKHKES--CRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGR 112 (238)
T ss_pred cccCCcccccchhhhhhhh--hhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccccc
Confidence 3477888877775432211 1100111111 001123568889999999999876322222221112222323221122
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEEC
Q 018784 157 DQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDA 215 (350)
Q Consensus 157 ~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~ 215 (350)
+..+..++..|+.|+.|.+.-++.+....++. +.|...+++.++++.|.+|++
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~------~~~~e~~ivv~sd~~i~~a~~ 165 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN------FESGEELIVVGSDEFLKIADT 165 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeecccc------CCCcceeEEecCCceEEeecc
Confidence 34477888899999999998777655443332 122233344444555555543
No 379
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.50 E-value=0.37 Score=42.44 Aligned_cols=150 Identities=12% Similarity=0.141 Sum_probs=75.0
Q ss_pred CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCC-CCC
Q 018784 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDAL-TGD 94 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~-~~~ 94 (350)
.+.+..+..++ ||++||+++.-....-|+.-...+...-..-+..|.++.|.+++.+.+.+ ..|.|+.=+.. ..+
T Consensus 144 ~gs~~~~~r~~---dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 144 SGSINDITRSS---DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp ---EEEEEE-T---TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cceeEeEEECC---CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 34566666554 99999988765555667754333433333345789999999998876654 78888876621 111
Q ss_pred eeee--ee---ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee--cCCCCcEEEEEEeCCCCcEEEEEeCC
Q 018784 95 EKHS--FE---HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV--GNSSGSIRTVAWLHSDQTILSSCTDS 167 (350)
Q Consensus 95 ~~~~--~~---h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~s~~~d 167 (350)
.-.. .. ..-.+..++|.+++...++|+....++--| .++.-.+.. .......+.+.|.+++.-+++ +.+
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~D--gGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l--G~~ 295 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTD--GGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL--GQD 295 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEEESS--TTSS-EE-GGGTTSSS---EEEEEETTEEEEE---ST
T ss_pred ccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEEeCC--CCccceECccccCCCCceEEEEEcCCCceEEE--CCC
Confidence 1110 11 122378999999988877776654433322 222211111 133456788888876554443 567
Q ss_pred CeEEEE
Q 018784 168 GGVRLW 173 (350)
Q Consensus 168 g~i~iw 173 (350)
|.|.-|
T Consensus 296 G~ll~~ 301 (302)
T PF14870_consen 296 GVLLRY 301 (302)
T ss_dssp TEEEEE
T ss_pred cEEEEe
Confidence 877654
No 380
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.47 E-value=0.01 Score=36.24 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=27.9
Q ss_pred CcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784 270 HGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (350)
Q Consensus 270 ~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~ 299 (350)
...|.+++|+|...++|.|..||.|.++++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 456999999999999999999999999988
No 381
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.31 E-value=0.82 Score=43.27 Aligned_cols=174 Identities=17% Similarity=0.235 Sum_probs=98.6
Q ss_pred ceeEEEecccCCCccEEEEEeCCCCeeEeeCC----CCceeeeccCccCCeEEEEECCC----CcEEEEeeCCCeEEEee
Q 018784 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGE----TGDWIGTFEGHKGAVWSCCLDAN----ALFSASGSADFTAKLWD 89 (350)
Q Consensus 18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~----~~~~~~~l~gH~~~V~~v~~~~~----~~~l~s~s~Dg~v~vWd 89 (350)
||..++|- ||+.++-.. +.+-+.+ +...+ |.-..|..++|.|- ...+...-....|-||.
T Consensus 21 PvhGlaWT----DGkqVvLT~----L~l~~gE~kfGds~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWq 88 (671)
T PF15390_consen 21 PVHGLAWT----DGKQVVLTD----LQLHNGEPKFGDSKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQ 88 (671)
T ss_pred cccceEec----CCCEEEEEe----eeeeCCccccCCccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEE
Confidence 88899886 786554332 3333222 11223 33345888999764 32344456789999998
Q ss_pred CCC-----CCeeee--eeccc----cEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCC
Q 018784 90 ALT-----GDEKHS--FEHKH----IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158 (350)
Q Consensus 90 ~~~-----~~~~~~--~~h~~----~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 158 (350)
+.- ++.... .+..+ -...|-|||....|+.=.....--++++.......+..-...+.|.+.+|..+++
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~ 168 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQ 168 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCC
Confidence 742 222211 11211 2357889999888766444433344555433333343345678899999999888
Q ss_pred cEEEEEeCCCeEEEEECCCCce-----eEeecCCCCeEEEEEecCCcEEE
Q 018784 159 TILSSCTDSGGVRLWDARSGKI-----VQTLETKSPVTSAEVSRDGRYIT 203 (350)
Q Consensus 159 ~~~~s~~~dg~i~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~ 203 (350)
+++++-+..=.-++||-..... -..+...+.|.++.-.-|.+..+
T Consensus 169 RLVVAvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~dsqVAv 218 (671)
T PF15390_consen 169 RLVVAVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDSQVAV 218 (671)
T ss_pred EEEEEeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccceEEE
Confidence 8877766545578898543321 11223344555555444444433
No 382
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.29 E-value=1.1 Score=43.00 Aligned_cols=235 Identities=15% Similarity=0.109 Sum_probs=125.8
Q ss_pred EEEEEeCCCCeeEeeCCCCceeeecc--CccC--CeEEEEECCCCcEEEEee-----CCCeEEEeeCCCCCeeeeeec--
Q 018784 33 FLVSASKDSSPMLRNGETGDWIGTFE--GHKG--AVWSCCLDANALFSASGS-----ADFTAKLWDALTGDEKHSFEH-- 101 (350)
Q Consensus 33 ~lasgs~d~~v~iw~~~~~~~~~~l~--gH~~--~V~~v~~~~~~~~l~s~s-----~Dg~v~vWd~~~~~~~~~~~h-- 101 (350)
.+..++.|+.+.-.|.++|+.+.... .+.. .+.+.-.-.++.+++..+ .+|.|..+|..+++.+..+.-
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p 201 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVP 201 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcC
Confidence 46667888999999999999886654 2221 111111111445544322 378999999999987765421
Q ss_pred -c-----------------------------ccEe-EEEEcCCCCeEEEeeCC-----C-----------eEEEEECCCC
Q 018784 102 -K-----------------------------HIVR-ACAFSEDTHLLLTGGFE-----K-----------ILRIFDLNRP 134 (350)
Q Consensus 102 -~-----------------------------~~V~-~~~~~~~~~~l~sg~~d-----~-----------~v~vwd~~~~ 134 (350)
. ..+. ...+.|...+++.+..+ + .|.--|++++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG 281 (527)
T TIGR03075 202 GDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTG 281 (527)
T ss_pred CCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccC
Confidence 0 0111 23455555555544322 2 3444455555
Q ss_pred CCCCee-ecCCCCc-------EEEEEEeCCCC--cEEEEEeCCCeEEEEECCCCceeEeecC------------CC--Ce
Q 018784 135 DAPPRE-VGNSSGS-------IRTVAWLHSDQ--TILSSCTDSGGVRLWDARSGKIVQTLET------------KS--PV 190 (350)
Q Consensus 135 ~~~~~~-~~~~~~~-------v~~~~~~~~~~--~~~~s~~~dg~i~iwd~~~~~~~~~~~~------------~~--~v 190 (350)
+..... ..+|... ..-+..-.+++ .+++.+..+|.+.+.|-++|+.+...+. .. ++
T Consensus 282 ~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~ 361 (527)
T TIGR03075 282 KIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPI 361 (527)
T ss_pred CEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCc
Confidence 443322 1222111 11111111222 4777889999999999999987522100 00 00
Q ss_pred ----------------------------EEEEEecCCcEEEEE--c--------------------------------CC
Q 018784 191 ----------------------------TSAEVSRDGRYITTA--D--------------------------------GS 208 (350)
Q Consensus 191 ----------------------------~~~~~~~~~~~l~~~--~--------------------------------~~ 208 (350)
...+++|+..++... + .+
T Consensus 362 ~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g 441 (527)
T TIGR03075 362 EVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMG 441 (527)
T ss_pred cChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCce
Confidence 113444544333211 0 13
Q ss_pred cEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecC
Q 018784 209 SVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKG 268 (350)
Q Consensus 209 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~ 268 (350)
.+.-+|+.+++..-.+..........+. ..+.+++.++.++.++.+|.++|+.+-....
T Consensus 442 ~l~AiD~~tGk~~W~~~~~~p~~~~~l~-t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 442 SLIAWDPITGKIVWEHKEDFPLWGGVLA-TAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eEEEEeCCCCceeeEecCCCCCCCcceE-ECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 4666777777666554433221111111 1356777788899999999999998866543
No 383
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.28 E-value=0.74 Score=40.79 Aligned_cols=209 Identities=16% Similarity=0.119 Sum_probs=105.3
Q ss_pred EEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee----cCCCCcEEE
Q 018784 75 FSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV----GNSSGSIRT 150 (350)
Q Consensus 75 ~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~----~~~~~~v~~ 150 (350)
++.+--..+.|.-|+..++.. ..+.++..+.++..-..+..|+++.. .+.+++++......... .........
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND 115 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDGLPLNRPND 115 (307)
T ss_pred EEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCCCCcCCCCc
Confidence 455555667778888765543 33444444555444333434444332 23445543222211110 111122223
Q ss_pred EEEeCCCCcEEEEEeC-----------CCeEEEEECCCCceeEeecC-CCCeEEEEEecCCcEEEEEcC--CcEEEEECC
Q 018784 151 VAWLHSDQTILSSCTD-----------SGGVRLWDARSGKIVQTLET-KSPVTSAEVSRDGRYITTADG--SSVKFWDAN 216 (350)
Q Consensus 151 ~~~~~~~~~~~~s~~~-----------dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~--~~i~vwd~~ 216 (350)
....+ ++.+.++-.. -|.|+..|. .+..+..+.. -...+.++|+||++.|..++- +.|.-|+..
T Consensus 116 ~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 116 GVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred eeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 33332 3444433222 123444443 3444444433 344578999999987766543 566666554
Q ss_pred C--cc---eeeeeec---CCCCceeEecCCCCcEEEEecCCC-eEEEEEcccCeeEEeecCCCcCEEEEEEc-CCCCE-E
Q 018784 217 H--FG---LVKGYNM---PCNTESASLEPKLGNIFIAGGEDM-WVHVFDFHTGEQIGCNKGHHGPVHCVRFS-PGGES-Y 285 (350)
Q Consensus 217 ~--~~---~~~~~~~---~~~~~~~~~~~~~~~~l~sg~~d~-~i~v~d~~~~~~~~~~~~h~~~v~~l~~s-p~~~~-l 285 (350)
. .. ....+.. +..+....... ++++.+++-.++ .|.+|+.. |+++.........+++++|- |+.+. +
T Consensus 194 ~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~ 271 (307)
T COG3386 194 PATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLY 271 (307)
T ss_pred cccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEE
Confidence 1 11 1001111 12233333333 467776555554 89999988 99888887776788899996 44443 4
Q ss_pred EEecC
Q 018784 286 ASGSE 290 (350)
Q Consensus 286 asgs~ 290 (350)
+++..
T Consensus 272 iTs~~ 276 (307)
T COG3386 272 ITSAR 276 (307)
T ss_pred EEecC
Confidence 44443
No 384
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.16 E-value=1.3 Score=42.54 Aligned_cols=186 Identities=15% Similarity=0.120 Sum_probs=100.1
Q ss_pred EEEEEeCCCCeeEeeCCCCceeeeccCcc-CCeE----------EEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeec
Q 018784 33 FLVSASKDSSPMLRNGETGDWIGTFEGHK-GAVW----------SCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH 101 (350)
Q Consensus 33 ~lasgs~d~~v~iw~~~~~~~~~~l~gH~-~~V~----------~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h 101 (350)
.|..++.++.|.-.|..+|+.+..+.--. ..+. .+++. +..++.++.|+.+.-.|..+++.+.....
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 55566778888889999998887654211 1111 11221 23445567899999999999998776532
Q ss_pred ccc--EeEEEEcC---CCCeEEEee------CCCeEEEEECCCCCCCCeeec----------------------------
Q 018784 102 KHI--VRACAFSE---DTHLLLTGG------FEKILRIFDLNRPDAPPREVG---------------------------- 142 (350)
Q Consensus 102 ~~~--V~~~~~~~---~~~~l~sg~------~d~~v~vwd~~~~~~~~~~~~---------------------------- 142 (350)
... -..+.-+| ++ .++.+. .++.|..+|+++++.......
T Consensus 149 ~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~ 227 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDA 227 (527)
T ss_pred ccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCc
Confidence 110 00111112 33 344443 267888888776543321100
Q ss_pred --CCCCcEE-EEEEeCCCCcEEEEEeC----CC-----------eEEEEECCCCceeEeecCC----------CCeEEEE
Q 018784 143 --NSSGSIR-TVAWLHSDQTILSSCTD----SG-----------GVRLWDARSGKIVQTLETK----------SPVTSAE 194 (350)
Q Consensus 143 --~~~~~v~-~~~~~~~~~~~~~s~~~----dg-----------~i~iwd~~~~~~~~~~~~~----------~~v~~~~ 194 (350)
...+.++ .+++-+..+.+++.-+. ++ .|.--|+++|+....++.. .+..-+.
T Consensus 228 ~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d 307 (527)
T TIGR03075 228 WKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFD 307 (527)
T ss_pred cccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEE
Confidence 0111222 12333333333332221 11 6777899999988777641 1122222
Q ss_pred EecCCc---EEE-EEcCCcEEEEECCCccee
Q 018784 195 VSRDGR---YIT-TADGSSVKFWDANHFGLV 221 (350)
Q Consensus 195 ~~~~~~---~l~-~~~~~~i~vwd~~~~~~~ 221 (350)
+..+|+ .++ ...+|.+.+.|-++++.+
T Consensus 308 ~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 308 LKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred eccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 334665 443 345788899998887765
No 385
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.06 E-value=0.83 Score=39.28 Aligned_cols=265 Identities=15% Similarity=0.169 Sum_probs=129.3
Q ss_pred CceeEEEecccCCCc-cEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCC-CcEEEEeeCCCe-EEEeeCCCC
Q 018784 17 RPVVDLFYSPITPDG-FFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFT-AKLWDALTG 93 (350)
Q Consensus 17 ~~v~~~~~~~~s~dg-~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~-v~vWd~~~~ 93 (350)
.++..-+|.. .|| ..+++.+.+|++.--- ..--.+| .++++|. ...++-+-.-|+ ..++|....
T Consensus 35 qavfasaf~~--~dgs~g~a~~~eaGk~v~~~------~lpaR~H-----gi~~~p~~~ravafARrPGtf~~vfD~~~~ 101 (366)
T COG3490 35 QAVFASAFDA--RDGSFGAATLSEAGKIVFAT------ALPARGH-----GIAFHPALPRAVAFARRPGTFAMVFDPNGA 101 (366)
T ss_pred cchheeeeec--cCCceeEEEEccCCceeeee------ecccccC-----CeecCCCCcceEEEEecCCceEEEECCCCC
Confidence 3454445543 455 3556666666643210 0011233 2344443 223333334444 245777666
Q ss_pred Ceeeeee---ccccEeEEEEcCCCCeEEEeeCC-----CeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEe
Q 018784 94 DEKHSFE---HKHIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCT 165 (350)
Q Consensus 94 ~~~~~~~---h~~~V~~~~~~~~~~~l~sg~~d-----~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~ 165 (350)
+...++. .....-.=.|||+|.+|+..-.| |.|-|||.........+...+.-....+.+.+++..+++..+
T Consensus 102 ~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 102 QEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred cCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 5444332 11111122589999999876443 779999987554444444444444556777766555555433
Q ss_pred C-----------------CCeEEEEECCCCceeEeec-----CCCCeEEEEEecCCcEEEEEc------CCcEEEEECCC
Q 018784 166 D-----------------SGGVRLWDARSGKIVQTLE-----TKSPVTSAEVSRDGRYITTAD------GSSVKFWDANH 217 (350)
Q Consensus 166 ~-----------------dg~i~iwd~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~------~~~i~vwd~~~ 217 (350)
. .-.+.+.|..+|..+.... .+..+..++..+||..+.... |----+=-.+.
T Consensus 182 GIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~ 261 (366)
T COG3490 182 GIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRK 261 (366)
T ss_pred ceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccC
Confidence 0 1123333434444332221 123567777777777665431 10000000111
Q ss_pred cceeeeeecCC--------CCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEec
Q 018784 218 FGLVKGYNMPC--------NTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGS 289 (350)
Q Consensus 218 ~~~~~~~~~~~--------~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs 289 (350)
++.++-+.++. ...++..+..++-+.++.-..+...+||..+|..+....- .-+.-.-+...-++..|
T Consensus 262 g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l----~daaGva~~~~gf~vss 337 (366)
T COG3490 262 GEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL----PDAAGVAAAKGGFAVSS 337 (366)
T ss_pred CCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc----cccccceeccCceEEec
Confidence 22222222221 1223444444556666766777888999999987643211 11111223334456667
Q ss_pred CCCcEEEec
Q 018784 290 EDGTIRIWQ 298 (350)
Q Consensus 290 ~Dg~v~vw~ 298 (350)
.+|.+.++.
T Consensus 338 g~G~~~~~s 346 (366)
T COG3490 338 GQGRIIFYS 346 (366)
T ss_pred CCceEEecc
Confidence 778888773
No 386
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.03 E-value=1.9 Score=43.25 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=70.3
Q ss_pred cccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCC--------eEEEEEC----------------CCCcEEEEee
Q 018784 25 SPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGA--------VWSCCLD----------------ANALFSASGS 80 (350)
Q Consensus 25 ~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~--------V~~v~~~----------------~~~~~l~s~s 80 (350)
.|+--++ .|..++.++.+.-.|..+|+.+..++-.... .+.+++- ..+..++.++
T Consensus 189 TPlvvgg-~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T 267 (764)
T TIGR03074 189 TPLKVGD-TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPT 267 (764)
T ss_pred CCEEECC-EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEec
Confidence 3433334 5566677888888899999887766432211 1222221 1234666778
Q ss_pred CCCeEEEeeCCCCCeeeeeeccccEe-------------EEEEcC--CCCeEEEeeC----------CCeEEEEECCCCC
Q 018784 81 ADFTAKLWDALTGDEKHSFEHKHIVR-------------ACAFSE--DTHLLLTGGF----------EKILRIFDLNRPD 135 (350)
Q Consensus 81 ~Dg~v~vWd~~~~~~~~~~~h~~~V~-------------~~~~~~--~~~~l~sg~~----------d~~v~vwd~~~~~ 135 (350)
.|+.+.-.|..+++....+..++.|. ...-.| .+..++.|+. +|.|+-+|+.+++
T Consensus 268 ~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk 347 (764)
T TIGR03074 268 SDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA 347 (764)
T ss_pred CCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence 89999999999999887765433321 111122 2345666643 6889999998877
Q ss_pred CCCee
Q 018784 136 APPRE 140 (350)
Q Consensus 136 ~~~~~ 140 (350)
.....
T Consensus 348 l~W~~ 352 (764)
T TIGR03074 348 LVWAW 352 (764)
T ss_pred EeeEE
Confidence 65443
No 387
>PHA02790 Kelch-like protein; Provisional
Probab=95.99 E-value=0.75 Score=43.74 Aligned_cols=183 Identities=10% Similarity=0.009 Sum_probs=83.0
Q ss_pred CCcEEEEeeCCC-----eEEEeeCCCCCeee--eeeccccEeEEEEcCCCCeEEEeeCC--CeEEEEECCCCCCCCeeec
Q 018784 72 NALFSASGSADF-----TAKLWDALTGDEKH--SFEHKHIVRACAFSEDTHLLLTGGFE--KILRIFDLNRPDAPPREVG 142 (350)
Q Consensus 72 ~~~~l~s~s~Dg-----~v~vWd~~~~~~~~--~~~h~~~V~~~~~~~~~~~l~sg~~d--~~v~vwd~~~~~~~~~~~~ 142 (350)
++.+++.||.++ ++..||..++.-.. .+..+..-.+++ .-++.+.+.||.+ ..+..||..+.........
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 456667777653 46667776543211 111111111121 2356667777754 3577788653321110000
Q ss_pred CCCCcEEEEEEeCCCCcEEEEEeCC---CeEEEEECCCCceeEeecCCCCe-EEEEEecCCcEEEEEcCCcEEEEECCCc
Q 018784 143 NSSGSIRTVAWLHSDQTILSSCTDS---GGVRLWDARSGKIVQTLETKSPV-TSAEVSRDGRYITTADGSSVKFWDANHF 218 (350)
Q Consensus 143 ~~~~~v~~~~~~~~~~~~~~s~~~d---g~i~iwd~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~~~i~vwd~~~~ 218 (350)
...-.-.+++. -++.+.+.||.+ .++..||+++.+=...-....+. ......-++++.+.+ |.+.+||..+.
T Consensus 350 ~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp~~~ 425 (480)
T PHA02790 350 LKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCESSN 425 (480)
T ss_pred CCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecCCCC
Confidence 10000111221 256666666654 34778888765311111111111 112223456655554 45678888765
Q ss_pred ceeeeeecCCCCceeEecCCCCcEEEEecCC-----CeEEEEEccc
Q 018784 219 GLVKGYNMPCNTESASLEPKLGNIFIAGGED-----MWVHVFDFHT 259 (350)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----~~i~v~d~~~ 259 (350)
.-...-.++..........-++++++.|+.+ ..+..||..+
T Consensus 426 ~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 426 TWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred cEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCC
Confidence 4332222222222222222346888888864 2355555543
No 388
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.93 E-value=2.2 Score=42.95 Aligned_cols=281 Identities=12% Similarity=0.099 Sum_probs=147.0
Q ss_pred CCceeEEEecccC--CC-ccEEEEEeCCCCeeEee-CCCCceee--eccCc--cCCeEEEEECCCCcEEEEeeCCCeEEE
Q 018784 16 SRPVVDLFYSPIT--PD-GFFLVSASKDSSPMLRN-GETGDWIG--TFEGH--KGAVWSCCLDANALFSASGSADFTAKL 87 (350)
Q Consensus 16 ~~~v~~~~~~~~s--~d-g~~lasgs~d~~v~iw~-~~~~~~~~--~l~gH--~~~V~~v~~~~~~~~l~s~s~Dg~v~v 87 (350)
+..|.|+.++|.- +. ++++|.|.++..+.+-- ..+...+. .+.+- ..+|....+-.|..+|..+..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 3467788888752 21 35899999988866532 23333222 12222 134555667777889999999999998
Q ss_pred eeCCCCCeeee-----eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEE-EEEeCC-CCcE
Q 018784 88 WDALTGDEKHS-----FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRT-VAWLHS-DQTI 160 (350)
Q Consensus 88 Wd~~~~~~~~~-----~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~-~~~~~~-~~~~ 160 (350)
+.+.....+.. .-...++.--.|+..++.-+-+..|+-..+|--.. .. ....-.-..+.. +.|..+ ..-.
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kL--v~spls~kev~~~c~f~s~a~~d~ 686 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KL--VYSPLSLKEVNHMCPFNSDAYPDS 686 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cE--EEeccchHHhhhhcccccccCCce
Confidence 86543322111 11223333334544333333344455555554321 10 000000001111 112221 2223
Q ss_pred EEEEeCCCeEEEEECCCC--ceeEeecCCCCeEEEEEecCCcEEEEE--------c----C---CcEEEEECCCcceeee
Q 018784 161 LSSCTDSGGVRLWDARSG--KIVQTLETKSPVTSAEVSRDGRYITTA--------D----G---SSVKFWDANHFGLVKG 223 (350)
Q Consensus 161 ~~s~~~dg~i~iwd~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~--------~----~---~~i~vwd~~~~~~~~~ 223 (350)
++++.. +.+++--+..= -.++++..+.....+++.+...++... . . ..++++|.+++.....
T Consensus 687 l~~~~~-~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~ 765 (1096)
T KOG1897|consen 687 LASANG-GALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSS 765 (1096)
T ss_pred EEEecC-CceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEee
Confidence 455444 46777655431 223445555556666666643333221 1 1 1378899888877766
Q ss_pred eecCCCC-----ceeEecCCCCcEEEEecC----------CCeEEEEEcccCeeEEeecC--CCcCEEEEEEcCCCCEEE
Q 018784 224 YNMPCNT-----ESASLEPKLGNIFIAGGE----------DMWVHVFDFHTGEQIGCNKG--HHGPVHCVRFSPGGESYA 286 (350)
Q Consensus 224 ~~~~~~~-----~~~~~~~~~~~~l~sg~~----------d~~i~v~d~~~~~~~~~~~~--h~~~v~~l~~sp~~~~la 286 (350)
+.+.... .++.+..+.+.++++|.. .|+|.+|....+..+..... -.+.+.++.-- +|+++|
T Consensus 766 hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA 844 (1096)
T KOG1897|consen 766 HEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLA 844 (1096)
T ss_pred ccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEE
Confidence 5554332 223344444678888873 57888888877444433322 24566666543 677776
Q ss_pred EecCCCcEEEecCCCCC
Q 018784 287 SGSEDGTIRIWQTNPPN 303 (350)
Q Consensus 287 sgs~Dg~v~vw~~~~~~ 303 (350)
. -...|+++++...+
T Consensus 845 ~--In~~vrLye~t~~~ 859 (1096)
T KOG1897|consen 845 G--INQSVRLYEWTTER 859 (1096)
T ss_pred e--cCcEEEEEEccccc
Confidence 4 44578888876553
No 389
>PHA03098 kelch-like protein; Provisional
Probab=95.80 E-value=0.71 Score=44.53 Aligned_cols=185 Identities=13% Similarity=0.065 Sum_probs=80.2
Q ss_pred CCCcEEEEeeCCC------eEEEeeCCCCCeeee--eeccccEeEEEEcCCCCeEEEeeCC-----CeEEEEECCCCCCC
Q 018784 71 ANALFSASGSADF------TAKLWDALTGDEKHS--FEHKHIVRACAFSEDTHLLLTGGFE-----KILRIFDLNRPDAP 137 (350)
Q Consensus 71 ~~~~~l~s~s~Dg------~v~vWd~~~~~~~~~--~~h~~~V~~~~~~~~~~~l~sg~~d-----~~v~vwd~~~~~~~ 137 (350)
.++.+++.||.++ .+..+|..+.+-... +..+..-.+++ .-++.+.+.||.+ ..+..||..+....
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 3455666666543 466777765542211 11111111111 2356677777765 34667877643321
Q ss_pred CeeecCCCCcEEEEEEeCCCCcEEEEEeCC------CeEEEEECCCCceeE--eecCCCCeEEEEEecCCcEEEEE-cC-
Q 018784 138 PREVGNSSGSIRTVAWLHSDQTILSSCTDS------GGVRLWDARSGKIVQ--TLETKSPVTSAEVSRDGRYITTA-DG- 207 (350)
Q Consensus 138 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d------g~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~-~~- 207 (350)
..........-.+++. -++.+++.||.+ +.+..||+.+.+=.. .+.......+ +...++++++.+ ..
T Consensus 372 ~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~ 448 (534)
T PHA03098 372 EEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGC-AIYHDGKIYVIGGISY 448 (534)
T ss_pred eCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCce-EEEECCEEEEECCccC
Confidence 1100011111111221 245566666522 358889987653211 1111111111 223345554433 21
Q ss_pred -------CcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCC-----CeEEEEEccc
Q 018784 208 -------SSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGED-----MWVHVFDFHT 259 (350)
Q Consensus 208 -------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----~~i~v~d~~~ 259 (350)
..+.+||..+.+....-.++...........++.+++.|+.+ +.+.+||..+
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 137888887654332211111111111111246777777754 3566666543
No 390
>PHA03098 kelch-like protein; Provisional
Probab=95.69 E-value=0.87 Score=43.93 Aligned_cols=141 Identities=14% Similarity=0.168 Sum_probs=66.1
Q ss_pred CCcEEEEEeCC-----CeEEEEECCCCceeE--eecCCCCeEEEEEecCCcEEEE-Ec--C----CcEEEEECCCcceee
Q 018784 157 DQTILSSCTDS-----GGVRLWDARSGKIVQ--TLETKSPVTSAEVSRDGRYITT-AD--G----SSVKFWDANHFGLVK 222 (350)
Q Consensus 157 ~~~~~~s~~~d-----g~i~iwd~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~-~~--~----~~i~vwd~~~~~~~~ 222 (350)
++.+++.||.+ ..+..||+.+.+=.. .+.....-.+++ .-++++.+. +. + ..+..||+.+..-..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~ 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence 45566666654 357788887654211 111111111222 234555443 31 1 357888987654332
Q ss_pred eeecCCCCceeEecCCCCcEEEEecCCC--------eEEEEEcccCe--eEEeecCCCcCEEEEEEcCCCCEEEEecCC-
Q 018784 223 GYNMPCNTESASLEPKLGNIFIAGGEDM--------WVHVFDFHTGE--QIGCNKGHHGPVHCVRFSPGGESYASGSED- 291 (350)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~l~sg~~d~--------~i~v~d~~~~~--~~~~~~~h~~~v~~l~~sp~~~~lasgs~D- 291 (350)
.-.++............+.+++.|+.+. .+.+||..+.+ .+..+.........+.+ ++.+++.|+.+
T Consensus 421 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~ 498 (534)
T PHA03098 421 GSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKY 498 (534)
T ss_pred cCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcC
Confidence 2222222111111222467888887532 37888876543 22222111111112222 66777778765
Q ss_pred ----CcEEEecCC
Q 018784 292 ----GTIRIWQTN 300 (350)
Q Consensus 292 ----g~v~vw~~~ 300 (350)
..|.++|..
T Consensus 499 ~~~~~~v~~yd~~ 511 (534)
T PHA03098 499 EYYINEIEVYDDK 511 (534)
T ss_pred CcccceeEEEeCC
Confidence 356666543
No 391
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.63 E-value=1.7 Score=39.51 Aligned_cols=217 Identities=13% Similarity=0.102 Sum_probs=108.8
Q ss_pred CCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCC----------------
Q 018784 81 ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS---------------- 144 (350)
Q Consensus 81 ~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~---------------- 144 (350)
..+.+.|+|+.+++..........+....|+|+|+.++-.. ++.|.++++...........+.
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv 99 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV 99 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred cceeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence 34678889998875544433356788999999999887665 5678888765432110000000
Q ss_pred CCcEEEEEEeCCCCcEEEEEeCCCe-----------------------------------EEEEECCCCceeE-ee----
Q 018784 145 SGSIRTVAWLHSDQTILSSCTDSGG-----------------------------------VRLWDARSGKIVQ-TL---- 184 (350)
Q Consensus 145 ~~~v~~~~~~~~~~~~~~s~~~dg~-----------------------------------i~iwd~~~~~~~~-~~---- 184 (350)
-+.-..+-|+|++..++..--++.. +.++|+.+++... ..
T Consensus 100 ~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~ 179 (353)
T PF00930_consen 100 FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSL 179 (353)
T ss_dssp SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHH
T ss_pred cccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecccc
Confidence 1122345666665555544333332 3334554443311 10
Q ss_pred -cCCCCeEEEEEecCCc-EEEEE--cCC---cEEEEECCCccee--eeeecCCC---CceeEec-CCCCcEEEEecCCCe
Q 018784 185 -ETKSPVTSAEVSRDGR-YITTA--DGS---SVKFWDANHFGLV--KGYNMPCN---TESASLE-PKLGNIFIAGGEDMW 251 (350)
Q Consensus 185 -~~~~~v~~~~~~~~~~-~l~~~--~~~---~i~vwd~~~~~~~--~~~~~~~~---~~~~~~~-~~~~~~l~sg~~d~~ 251 (350)
.....+..+.|.++++ +++.- .+. .+.+.|..+.... .....+.- .....+. +....++.....||.
T Consensus 180 ~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~ 259 (353)
T PF00930_consen 180 NPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGY 259 (353)
T ss_dssp HTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSS
T ss_pred CCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCC
Confidence 1123467788888888 44332 222 3566677654332 11111111 1122222 445566666668886
Q ss_pred EEEE--EcccCeeEEeecCCCcCEEE-EEEcCCCCEE-EEecCC--CcEEEecC
Q 018784 252 VHVF--DFHTGEQIGCNKGHHGPVHC-VRFSPGGESY-ASGSED--GTIRIWQT 299 (350)
Q Consensus 252 i~v~--d~~~~~~~~~~~~h~~~v~~-l~~sp~~~~l-asgs~D--g~v~vw~~ 299 (350)
-+|| +...+. ...+....-.|.. +.+.+++..+ .++..+ ..-.||.+
T Consensus 260 ~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 260 RHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp EEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred cEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence 5555 544444 3345444455644 6777776654 455553 24444443
No 392
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.50 E-value=1.3 Score=38.12 Aligned_cols=184 Identities=16% Similarity=0.234 Sum_probs=99.7
Q ss_pred cCCCccEEEEEeC-----CCCeeEeeCCC-CceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEe------------
Q 018784 27 ITPDGFFLVSASK-----DSSPMLRNGET-GDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLW------------ 88 (350)
Q Consensus 27 ~s~dg~~lasgs~-----d~~v~iw~~~~-~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vW------------ 88 (350)
++|||.+|...=+ -|.|-|||... .+.+.++.+|--.=.-+.+.+||++++.+ .|-|+.-
T Consensus 121 fs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvva--nGGIethpdfgR~~lNlds 198 (366)
T COG3490 121 FSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVA--NGGIETHPDFGRTELNLDS 198 (366)
T ss_pred cCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEe--CCceecccccCccccchhh
Confidence 4458988764433 34577899753 34566777776555667888999998865 4555544
Q ss_pred --------eCCCCCe--eeeee---ccccEeEEEEcCCCCeEEEeeCCCeEE----EEECCCCCCCCee-------ecCC
Q 018784 89 --------DALTGDE--KHSFE---HKHIVRACAFSEDTHLLLTGGFEKILR----IFDLNRPDAPPRE-------VGNS 144 (350)
Q Consensus 89 --------d~~~~~~--~~~~~---h~~~V~~~~~~~~~~~l~sg~~d~~v~----vwd~~~~~~~~~~-------~~~~ 144 (350)
|..+++. ++++. +...++.++.-++|+..+.+-..|.-. +--...+..+.+. ....
T Consensus 199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~ 278 (366)
T COG3490 199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAF 278 (366)
T ss_pred cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHH
Confidence 2222221 11221 334577788778877655443222100 0000001111111 1112
Q ss_pred CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEE
Q 018784 145 SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWD 214 (350)
Q Consensus 145 ~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd 214 (350)
...+-+++....++.+.++.-.-+...+||..+|..+....... +..+.... +-+.+++.+|.|.++.
T Consensus 279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d-aaGva~~~-~gf~vssg~G~~~~~s 346 (366)
T COG3490 279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD-AAGVAAAK-GGFAVSSGQGRIIFYS 346 (366)
T ss_pred HhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-cccceecc-CceEEecCCceEEecc
Confidence 23466677666677777877776778899999998765443221 11122222 3355555666776663
No 393
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.46 E-value=1.7 Score=38.39 Aligned_cols=157 Identities=14% Similarity=0.168 Sum_probs=80.8
Q ss_pred ceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC-eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEE
Q 018784 52 DWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD 130 (350)
Q Consensus 52 ~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd 130 (350)
.+.....+-.+.+..+..++++.+++.++.-...+-||..... ..+...-...|.++.|.|++.+.+. ...+.|+.=+
T Consensus 135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~-~~Gg~~~~s~ 213 (302)
T PF14870_consen 135 TWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWML-ARGGQIQFSD 213 (302)
T ss_dssp SEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEE-ETTTEEEEEE
T ss_pred CeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEE-eCCcEEEEcc
Confidence 3444445555778888889999998887776777789864322 3333345678999999999876554 4788888776
Q ss_pred C-CCCCC---CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC----CCCeEEEEEecCCcEE
Q 018784 131 L-NRPDA---PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET----KSPVTSAEVSRDGRYI 202 (350)
Q Consensus 131 ~-~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~----~~~v~~~~~~~~~~~l 202 (350)
. ...+. +........-.+..++|.++. .+.++|+. |++ +.....|+.-..... ...+..+.|.++.+-+
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf 290 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF 290 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCC-CEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceE
Confidence 2 11110 000011112237888987654 45555544 444 334455655444432 4457888888878888
Q ss_pred EEEcCCcEEE
Q 018784 203 TTADGSSVKF 212 (350)
Q Consensus 203 ~~~~~~~i~v 212 (350)
+.+.+|.+--
T Consensus 291 ~lG~~G~ll~ 300 (302)
T PF14870_consen 291 VLGQDGVLLR 300 (302)
T ss_dssp EE-STTEEEE
T ss_pred EECCCcEEEE
Confidence 8888876543
No 394
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.43 E-value=1.6 Score=37.84 Aligned_cols=160 Identities=15% Similarity=0.172 Sum_probs=100.9
Q ss_pred eccCCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeec--cCccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784 13 HGHSRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTF--EGHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (350)
Q Consensus 13 ~gH~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l--~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~ 90 (350)
.|-+..|+++.|+| +.+.|.+-.+...-.+|=...|+.++++ .+-.++ -++.+-..+++.++-=.++.+.+..+
T Consensus 82 ~g~~~nvS~LTynp---~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~Dp-E~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNP---DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDP-ETIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCC---CcceEEEecCCCceEEEEecCCceEEEecccccCCh-hHeEEecCCEEEEEehhcceEEEEEE
Confidence 46566699999997 7778888777777777766788888765 342222 34566677888887777788877765
Q ss_pred CCCCe-------eeee---ec-cccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCe--eecCC-------CCcEEE
Q 018784 91 LTGDE-------KHSF---EH-KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPR--EVGNS-------SGSIRT 150 (350)
Q Consensus 91 ~~~~~-------~~~~---~h-~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~--~~~~~-------~~~v~~ 150 (350)
..... ...+ .+ +.....++|.|..+.|..+-.-.-++||.+........ ....+ -..+..
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg 237 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG 237 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence 43321 1122 23 45678999999999898888888888887653221111 00111 112444
Q ss_pred EEEeCCCCcEEEEEeCCCeEEEEECC
Q 018784 151 VAWLHSDQTILSSCTDSGGVRLWDAR 176 (350)
Q Consensus 151 ~~~~~~~~~~~~s~~~dg~i~iwd~~ 176 (350)
+.|.+..+.+++-+.+++.+.-.|..
T Consensus 238 l~~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 238 LEFNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ceecCCCCcEEEEecCCceEEEEecC
Confidence 55555556666665666666666643
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.34 E-value=1.4 Score=36.80 Aligned_cols=53 Identities=19% Similarity=0.130 Sum_probs=42.5
Q ss_pred CCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCC-CC-EEEEecCC
Q 018784 239 LGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPG-GE-SYASGSED 291 (350)
Q Consensus 239 ~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~-~~-~lasgs~D 291 (350)
.|+++++.-..++|...|..+|+.+..+.-....|++++|--. -. +++|+..+
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehhc
Confidence 5889999999999999999999999988888889999999732 22 34555543
No 396
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.32 E-value=0.36 Score=44.72 Aligned_cols=143 Identities=12% Similarity=0.083 Sum_probs=91.0
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCC--------cEEEEEcCCcEEEEECCCcce-ee---e
Q 018784 156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDG--------RYITTADGSSVKFWDANHFGL-VK---G 223 (350)
Q Consensus 156 ~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~~~~i~vwd~~~~~~-~~---~ 223 (350)
+...++..++....+.--|++.|+.+-.+..+..+ -+.+.|.. ..|++-++..|.-.|.|-... +. .
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 33445666777778888899999999988887766 56677654 335555666666667664331 11 1
Q ss_pred eecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecCC
Q 018784 224 YNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
..........+.......++++++..|.|++||--.-+.-..+.+....|..+..+.+|.++++.+.. .+.+-|++
T Consensus 557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 11111111111111235789999999999999954333333456777889999999999987665543 56666654
No 397
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.19 E-value=1.8 Score=37.14 Aligned_cols=163 Identities=14% Similarity=0.076 Sum_probs=98.1
Q ss_pred ccCCceeEEEecccCCCccEEEEEeCCC--CeeEeeCCCCceeeeccCc-cCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784 14 GHSRPVVDLFYSPITPDGFFLVSASKDS--SPMLRNGETGDWIGTFEGH-KGAVWSCCLDANALFSASGSADFTAKLWDA 90 (350)
Q Consensus 14 gH~~~v~~~~~~~~s~dg~~lasgs~d~--~v~iw~~~~~~~~~~l~gH-~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~ 90 (350)
-.+.....+.|.. +|.++-|.+.-| .++.+|+++++.+....-. .----.+++..+..+. -.-..+...+||.
T Consensus 42 d~~aFTQGL~~~~---~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~q-LTWk~~~~f~yd~ 117 (264)
T PF05096_consen 42 DPTAFTQGLEFLD---DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQ-LTWKEGTGFVYDP 117 (264)
T ss_dssp -TT-EEEEEEEEE---TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEE-EESSSSEEEEEET
T ss_pred CCcccCccEEecC---CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEE-EEecCCeEEEEcc
Confidence 3445667888853 788888888766 4788999999876543211 1112234444443343 4468899999999
Q ss_pred CCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee----cCCCCcEEEEEEeCCCCcEEEEEeC
Q 018784 91 LTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV----GNSSGSIRTVAWLHSDQTILSSCTD 166 (350)
Q Consensus 91 ~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~s~~~ 166 (350)
.+.+.+.++...+.-+.++ .+++.|+.......+..+|..+.+...... +..-..+..+.|. ++.+.+-.-.
T Consensus 118 ~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~ 193 (264)
T PF05096_consen 118 NTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQ 193 (264)
T ss_dssp TTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETT
T ss_pred ccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCC
Confidence 9888888777666666666 566777777777789999976543322111 1112234556665 4666666666
Q ss_pred CCeEEEEECCCCceeEee
Q 018784 167 SGGVRLWDARSGKIVQTL 184 (350)
Q Consensus 167 dg~i~iwd~~~~~~~~~~ 184 (350)
...|...|+.+|+++..+
T Consensus 194 td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 194 TDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp SSEEEEEETTT-BEEEEE
T ss_pred CCeEEEEeCCCCeEEEEE
Confidence 667888899988877655
No 398
>PHA02790 Kelch-like protein; Provisional
Probab=95.14 E-value=1.7 Score=41.35 Aligned_cols=142 Identities=10% Similarity=0.038 Sum_probs=68.9
Q ss_pred CccEEEEEeCCC-----CeeEeeCCCCceee--eccCccCCeEEEEECCCCcEEEEeeCC--CeEEEeeCCCCCeee--e
Q 018784 30 DGFFLVSASKDS-----SPMLRNGETGDWIG--TFEGHKGAVWSCCLDANALFSASGSAD--FTAKLWDALTGDEKH--S 98 (350)
Q Consensus 30 dg~~lasgs~d~-----~v~iw~~~~~~~~~--~l~gH~~~V~~v~~~~~~~~l~s~s~D--g~v~vWd~~~~~~~~--~ 98 (350)
++.+.+.|+.++ ++..||..+.++.. .+....... ++ ...++.+.+.||.+ .++..||..++.-.. .
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~-v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SG-VPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eE-EEECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 456667787653 45678887776653 222111111 11 22467777777764 457788875543211 1
Q ss_pred eeccccEeEEEEcCCCCeEEEeeCCC---eEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784 99 FEHKHIVRACAFSEDTHLLLTGGFEK---ILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (350)
Q Consensus 99 ~~h~~~V~~~~~~~~~~~l~sg~~d~---~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~ 175 (350)
+..... ......-++++.+.||.++ .+..||..+..............-.+++. -++.+.+.| |.+.++|.
T Consensus 349 l~~~r~-~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~--~~~~IYv~G---G~~e~ydp 422 (480)
T PHA02790 349 LLKPRC-NPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALV--FGRRLFLVG---RNAEFYCE 422 (480)
T ss_pred CCCCCc-ccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEE--ECCEEEEEC---CceEEecC
Confidence 121111 1111233567777777553 46778876432211000000000011211 245666665 35778888
Q ss_pred CCCc
Q 018784 176 RSGK 179 (350)
Q Consensus 176 ~~~~ 179 (350)
++.+
T Consensus 423 ~~~~ 426 (480)
T PHA02790 423 SSNT 426 (480)
T ss_pred CCCc
Confidence 7653
No 399
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.04 E-value=2.9 Score=38.80 Aligned_cols=167 Identities=15% Similarity=0.197 Sum_probs=82.6
Q ss_pred CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee---cccc-----EeEEEEcCC
Q 018784 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE---HKHI-----VRACAFSED 113 (350)
Q Consensus 42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~---h~~~-----V~~~~~~~~ 113 (350)
.|+||+. .|+.+.++.--.+.|.++.|+.+..++ .-..||.++++|... +....+. .... +....+..+
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G-~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLFG-EFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCCC-ceeechhhhccccCcccccccccccCCC
Confidence 4888874 566766654333889999998765554 456899999999852 2222221 1111 222233445
Q ss_pred CCeEEEeeCCCeEEEEECCCCCC-------CCeeecCC-CCcEEE-EEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee
Q 018784 114 THLLLTGGFEKILRIFDLNRPDA-------PPREVGNS-SGSIRT-VAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL 184 (350)
Q Consensus 114 ~~~l~sg~~d~~v~vwd~~~~~~-------~~~~~~~~-~~~v~~-~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~ 184 (350)
|-.+++... ..+.+=+...+.. +......+ ...... ..+. .+....+....++.+.+.+-...+ .+
T Consensus 139 GivvLt~~~-~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~-~~~~~~i~~~~g~~i~~i~~~~~~---~i 213 (410)
T PF04841_consen 139 GIVVLTGNN-RFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS-SDRVVEILLANGETIYIIDENSFK---QI 213 (410)
T ss_pred CEEEECCCC-eEEEEeCccccchhhccccCCCcccccccccccccceEee-cCcceEEEEecCCEEEEEEccccc---cc
Confidence 544444322 2222222221100 00000000 001111 1112 122222333344556644432221 13
Q ss_pred cCCCCeEEEEEecCCcEEEEEc-CCcEEEEECC
Q 018784 185 ETKSPVTSAEVSRDGRYITTAD-GSSVKFWDAN 216 (350)
Q Consensus 185 ~~~~~v~~~~~~~~~~~l~~~~-~~~i~vwd~~ 216 (350)
....++..++++|++++++.-. ++.+.+....
T Consensus 214 ~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 214 DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred cCCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 3456899999999999987654 5777777643
No 400
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.94 E-value=1.8 Score=35.80 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=63.7
Q ss_pred CCcEEEEeeCCCeEEEeeCCCC--CeeeeeeccccEeEEEEcCCCCeEEEeeC------CCeEEEE-ECCCC---CCCCe
Q 018784 72 NALFSASGSADFTAKLWDALTG--DEKHSFEHKHIVRACAFSEDTHLLLTGGF------EKILRIF-DLNRP---DAPPR 139 (350)
Q Consensus 72 ~~~~l~s~s~Dg~v~vWd~~~~--~~~~~~~h~~~V~~~~~~~~~~~l~sg~~------d~~v~vw-d~~~~---~~~~~ 139 (350)
|-.++| -..+.|.+|++.+. +.+..+.--+.|..+.++..|.+|+|-=. ...+|+| +.+.. ..+..
T Consensus 29 d~Lfva--~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~ 106 (215)
T PF14761_consen 29 DALFVA--ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR 106 (215)
T ss_pred ceEEEE--cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE
Confidence 434444 34567999998733 34555666678999999999999998422 2267776 22211 11110
Q ss_pred -ee---------------------cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC
Q 018784 140 -EV---------------------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG 178 (350)
Q Consensus 140 -~~---------------------~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~ 178 (350)
.. .+....+.+++..+-.+.+++++ ++++.+|.+...
T Consensus 107 vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~ 165 (215)
T PF14761_consen 107 VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQ 165 (215)
T ss_pred EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEE
Confidence 11 11233566777777778888765 358999987543
No 401
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.83 E-value=0.11 Score=31.58 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=28.3
Q ss_pred cccEeEEEEcCCCCeEEEeeCCCeEEEEECC
Q 018784 102 KHIVRACAFSEDTHLLLTGGFEKILRIFDLN 132 (350)
Q Consensus 102 ~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~ 132 (350)
...|.++.|+|...+||.+..+|.|.++.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4568999999999999999999999999984
No 402
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.64 E-value=0.18 Score=50.53 Aligned_cols=99 Identities=21% Similarity=0.372 Sum_probs=66.0
Q ss_pred CCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-C---
Q 018784 113 DTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-S--- 188 (350)
Q Consensus 113 ~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~--- 188 (350)
.+..++.|+.-|.+..+|+...-.+...-....++|.+++|. .++.+++.|-.+|.|.+||+..+++++.+... .
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn-~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFN-QDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEec-CCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence 455678888888888888764211122334456789999986 57778888899999999999999888877642 2
Q ss_pred CeEEEEEecCCcEEEEEc-CCcEEEEE
Q 018784 189 PVTSAEVSRDGRYITTAD-GSSVKFWD 214 (350)
Q Consensus 189 ~v~~~~~~~~~~~l~~~~-~~~i~vwd 214 (350)
.+..+.+..++..+.+++ +|. +|.
T Consensus 177 ~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 177 GVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred eEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 344444555555444443 443 554
No 403
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.50 E-value=0.12 Score=51.73 Aligned_cols=71 Identities=13% Similarity=0.216 Sum_probs=56.8
Q ss_pred CCceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEE---ECCCCcEEEEeeCCCeEEEeeCC
Q 018784 16 SRPVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC---LDANALFSASGSADFTAKLWDAL 91 (350)
Q Consensus 16 ~~~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~---~~~~~~~l~s~s~Dg~v~vWd~~ 91 (350)
.+||.+++|+. ||++++.|=.+|-|.+||.+.++.++.+.-|..++..+- +..++..+.++..-|. +|.+.
T Consensus 130 ~~~Vtsvafn~---dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 130 QGPVTSVAFNQ---DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CCcceeeEecC---CCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 46999999986 999999999999999999999999998887777665543 4455667777766665 77754
No 404
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=1.8 Score=35.58 Aligned_cols=171 Identities=14% Similarity=0.151 Sum_probs=90.9
Q ss_pred CCCeEEEeeC--CCeEEEEECCCCCCCCeeecCC----CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecC
Q 018784 113 DTHLLLTGGF--EKILRIFDLNRPDAPPREVGNS----SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLET 186 (350)
Q Consensus 113 ~~~~l~sg~~--d~~v~vwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~ 186 (350)
++.++.+.+. ...|++||+..++......-.. ...++. -+..+..-...+|.-..+|.++.+++..+..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~-----~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITK-----LGDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceee-----ccceEEEEEeccceeEEEChHHhhhhccccc
Confidence 3466666554 3569999998654322221110 001111 1222333335668888899988888777766
Q ss_pred CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCcee----EecCCCCcEEEEecCCCeEEEEEcccCee
Q 018784 187 KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESA----SLEPKLGNIFIAGGEDMWVHVFDFHTGEQ 262 (350)
Q Consensus 187 ~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~sg~~d~~i~v~d~~~~~~ 262 (350)
+..-..++-... +++.+.....+++-|..++....+.........+ .+.--+|.+++--..+..|...|..+|+.
T Consensus 130 ~GeGWgLt~d~~-~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~VdG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 130 EGEGWGLTSDDK-NLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWVDGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred CCcceeeecCCc-ceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeeeccEEEEeeeeecceEEEcCCCCcE
Confidence 555444433222 2333333346777787776655544332111110 11112456666666666666777777776
Q ss_pred EEee------------cCCCcCEEEEEEcCCC-CEEEEec
Q 018784 263 IGCN------------KGHHGPVHCVRFSPGG-ESYASGS 289 (350)
Q Consensus 263 ~~~~------------~~h~~~v~~l~~sp~~-~~lasgs 289 (350)
+..+ ..|....+.+++-|++ +++++|-
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 5432 2244456789999886 5666663
No 405
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.16 E-value=4.6 Score=37.22 Aligned_cols=150 Identities=19% Similarity=0.285 Sum_probs=73.6
Q ss_pred CCccEEEEE--eCCCC----eeEeeCCCCceeeeccCccCC---eEEEEECCCCcEEEEee-------------------
Q 018784 29 PDGFFLVSA--SKDSS----PMLRNGETGDWIGTFEGHKGA---VWSCCLDANALFSASGS------------------- 80 (350)
Q Consensus 29 ~dg~~lasg--s~d~~----v~iw~~~~~~~~~~l~gH~~~---V~~v~~~~~~~~l~s~s------------------- 80 (350)
|+|.+++|+ ..+|. +.+.|.++.+.....+...+. -+-.-+.|....++|..
T Consensus 139 p~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 139 PDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred CCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcc
Confidence 377777664 33333 667888888777766553332 23444567777777763
Q ss_pred -CCCeEEEeeCCCCCeeeeeecc---ccEeEEEEc--CCCCeEEEe-eCCCeE-EEEECCCCCCCCe---ee--------
Q 018784 81 -ADFTAKLWDALTGDEKHSFEHK---HIVRACAFS--EDTHLLLTG-GFEKIL-RIFDLNRPDAPPR---EV-------- 141 (350)
Q Consensus 81 -~Dg~v~vWd~~~~~~~~~~~h~---~~V~~~~~~--~~~~~l~sg-~~d~~v-~vwd~~~~~~~~~---~~-------- 141 (350)
--.++.+||..+.+.+.++... ..+..+.|. |+..+=.+| .-..+| ++|.-+.+....+ .+
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence 2368999999999888877643 246677775 334333332 223333 3333222211000 00
Q ss_pred ---------cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC
Q 018784 142 ---------GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG 178 (350)
Q Consensus 142 ---------~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~ 178 (350)
+...+-++.+..+-++..+.+++-.+|.|+-||+...
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 0113457888888889999999999999999999753
No 406
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.12 E-value=0.41 Score=40.19 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=43.3
Q ss_pred CCcEEEEEeCCCeEEEEECCCCceeEee---------------cCCCCeEEEEEecCCcEEEEEcCCcEEEEECC
Q 018784 157 DQTILSSCTDSGGVRLWDARSGKIVQTL---------------ETKSPVTSAEVSRDGRYITTADGSSVKFWDAN 216 (350)
Q Consensus 157 ~~~~~~s~~~dg~i~iwd~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~ 216 (350)
.+.+++.-+.+|.+++||+.+++.+..- .....|..+.++.+|.-+++-+++....|+..
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 4555666778899999999998765433 12345777888888887777677777888754
No 407
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.06 E-value=2.4 Score=35.49 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=75.4
Q ss_pred eEEEEECCCCcEEEEeeCC---------CeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEE-EeeCCCeEEEEE--C
Q 018784 64 VWSCCLDANALFSASGSAD---------FTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLL-TGGFEKILRIFD--L 131 (350)
Q Consensus 64 V~~v~~~~~~~~l~s~s~D---------g~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~-sg~~d~~v~vwd--~ 131 (350)
.+--..+|+|++++..-.| |.++.|-+.. +....++.-..-+.++|..+.+.++ .-+.+-+|..|| .
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~ 189 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-QVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDC 189 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccEEEEeccCC-CceeeehhccCCccccccccCcEEEEEccCceEEeeeecCC
Confidence 3344568999997655444 3344443321 1111112222335678887776654 556788888888 3
Q ss_pred CCCCCCCee-----ec--CCCCc-EEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC-CCeEEEEEec
Q 018784 132 NRPDAPPRE-----VG--NSSGS-IRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK-SPVTSAEVSR 197 (350)
Q Consensus 132 ~~~~~~~~~-----~~--~~~~~-v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~ 197 (350)
.++...... .. ..... .-.++ ...++.+.+++..-++|...|+.+|+.+.++..+ ..+++++|--
T Consensus 190 ~tG~~snr~~i~dlrk~~~~e~~~PDGm~-ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 190 PTGDLSNRKVIFDLRKSQPFESLEPDGMT-IDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CcccccCcceeEEeccCCCcCCCCCCcce-EccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 333221110 00 00000 00111 1346778888888899999999999999998865 5688888864
No 408
>PRK13684 Ycf48-like protein; Provisional
Probab=94.03 E-value=4.4 Score=36.49 Aligned_cols=148 Identities=11% Similarity=0.054 Sum_probs=76.3
Q ss_pred ceeEEEecccCCCccEEEEEeCCCCee-EeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee
Q 018784 18 PVVDLFYSPITPDGFFLVSASKDSSPM-LRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK 96 (350)
Q Consensus 18 ~v~~~~~~~~s~dg~~lasgs~d~~v~-iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~ 96 (350)
.+.++.+.| ++.+++++.. |.+. .++.....+...-.+-...++++.+.+++.+++.+ ..|.+++=....+..-
T Consensus 174 ~~~~i~~~~---~g~~v~~g~~-G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 174 VVRNLRRSP---DGKYVAVSSR-GNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred eEEEEEECC---CCeEEEEeCC-ceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 466776664 7777766554 5433 22222122333222334568888998888876654 5676653222222221
Q ss_pred eeee-----ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee---cCCCCcEEEEEEeCCCCcEEEEEeCCC
Q 018784 97 HSFE-----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV---GNSSGSIRTVAWLHSDQTILSSCTDSG 168 (350)
Q Consensus 97 ~~~~-----h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~s~~~dg 168 (350)
.... ....+.++.+.|++..++ ++.+|.+.. ..+.+.. .... .......+.+.+.+++ ..++. +..|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~~-~~~~~-G~~G 323 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKT-WEKDPVGEEVPSNFYKIVFLDPE-KGFVL-GQRG 323 (334)
T ss_pred ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCC-CeECCcCCCCCcceEEEEEeCCC-ceEEE-CCCc
Confidence 1111 113477889999877555 445665443 2222221 1111 1122356677776544 44444 4568
Q ss_pred eEEEEEC
Q 018784 169 GVRLWDA 175 (350)
Q Consensus 169 ~i~iwd~ 175 (350)
.|.-|+-
T Consensus 324 ~il~~~~ 330 (334)
T PRK13684 324 VLLRYVG 330 (334)
T ss_pred eEEEecC
Confidence 8887763
No 409
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.86 E-value=3.9 Score=35.22 Aligned_cols=150 Identities=15% Similarity=0.119 Sum_probs=86.3
Q ss_pred ceeEEEecccCCCccEEEEEe-CCCCeeEeeCCCCceee-eccCccCCeEEEEECCCCcEEEEeeCCCeEEEee-CCCCC
Q 018784 18 PVVDLFYSPITPDGFFLVSAS-KDSSPMLRNGETGDWIG-TFEGHKGAVWSCCLDANALFSASGSADFTAKLWD-ALTGD 94 (350)
Q Consensus 18 ~v~~~~~~~~s~dg~~lasgs-~d~~v~iw~~~~~~~~~-~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd-~~~~~ 94 (350)
.+...+.++ ||..+|... .++.-.+|-...+.... .+.+. .+..-.|++++.+.+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~---dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSP---DGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECC---CCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 455666554 887665544 33444554443333322 23443 566778899988887777777777774 33333
Q ss_pred ee-eeee--cc-ccEeEEEEcCCCCeEEEee---CCCeEEEEECCCCCCC--C------eeecCCCCcEEEEEEeCCCCc
Q 018784 95 EK-HSFE--HK-HIVRACAFSEDTHLLLTGG---FEKILRIFDLNRPDAP--P------REVGNSSGSIRTVAWLHSDQT 159 (350)
Q Consensus 95 ~~-~~~~--h~-~~V~~~~~~~~~~~l~sg~---~d~~v~vwd~~~~~~~--~------~~~~~~~~~v~~~~~~~~~~~ 159 (350)
.. ..+. .. ..|..++++|||..++... .++.|.+--+.....- . .........+..+.|.+++..
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 22 2222 11 2799999999999887654 3566666654321111 1 111123457889999977665
Q ss_pred EEEEEeCCCeEEE
Q 018784 160 ILSSCTDSGGVRL 172 (350)
Q Consensus 160 ~~~s~~~dg~i~i 172 (350)
++++...++.+..
T Consensus 180 ~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 180 VVLGRSAGGPVVR 192 (253)
T ss_pred EEEeCCCCCceeE
Confidence 5555555544443
No 410
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.63 E-value=2.5 Score=41.18 Aligned_cols=108 Identities=18% Similarity=0.223 Sum_probs=66.4
Q ss_pred eEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeC--CCCcEEEEEeCCCeEEEEECC-----C-
Q 018784 106 RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLH--SDQTILSSCTDSGGVRLWDAR-----S- 177 (350)
Q Consensus 106 ~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~s~~~dg~i~iwd~~-----~- 177 (350)
.-+.-+.-++..++-+....+.|||...........-...+.|..+.|.. +++.+++.| ..+.|.++--. .
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG-f~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG-FPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE-cCcEEEEEEccchhhhcC
Confidence 33444455555555555677999999866533333334578899999873 445555555 55788887431 1
Q ss_pred ---CceeEeec----CCCCeEEEEEecCCcEEEEEcCCcEEEEEC
Q 018784 178 ---GKIVQTLE----TKSPVTSAEVSRDGRYITTADGSSVKFWDA 215 (350)
Q Consensus 178 ---~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~ 215 (350)
-..+..+. ...+|.+..|.++|.+++++ ++.+.++|-
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK 155 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence 12333332 23578888999999877654 557777764
No 411
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.60 E-value=6.1 Score=36.65 Aligned_cols=143 Identities=10% Similarity=0.147 Sum_probs=86.3
Q ss_pred CCcEEEEEeCCCeEEEEECCCCc-----eeEeecCCCCeEEEEEec-----CCcEEEEEcCCcEEEEECCC---------
Q 018784 157 DQTILSSCTDSGGVRLWDARSGK-----IVQTLETKSPVTSAEVSR-----DGRYITTADGSSVKFWDANH--------- 217 (350)
Q Consensus 157 ~~~~~~s~~~dg~i~iwd~~~~~-----~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~~i~vwd~~~--------- 217 (350)
+...++.|+..|.++|++..... .+.+.+...||..+..-+ +...|+.-.=+.+.+|.+..
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 44567788999999999986543 445555667887776432 23455555555666776521
Q ss_pred -c--ceeeeeecCCCCceeE---ecC-CCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecC
Q 018784 218 -F--GLVKGYNMPCNTESAS---LEP-KLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSE 290 (350)
Q Consensus 218 -~--~~~~~~~~~~~~~~~~---~~~-~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~ 290 (350)
. ..+..+.++....... |-. .....+.+-+.||.+.+|+-+..-..+.+.+ .--...+.|.|....|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 1 1122222222111111 111 1247888999999999998554332333332 222345778888889999999
Q ss_pred CCcEEEecCC
Q 018784 291 DGTIRIWQTN 300 (350)
Q Consensus 291 Dg~v~vw~~~ 300 (350)
+..|..|.+.
T Consensus 195 s~~l~~Yky~ 204 (418)
T PF14727_consen 195 SWTLECYKYQ 204 (418)
T ss_pred ceeEEEecHH
Confidence 9999998763
No 412
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.02 E-value=8.7 Score=36.74 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=82.8
Q ss_pred CCeEEEEECCCCcEEEEee--CCCeEEEeeCCCCCeeeeeeccccEeEEEEcCC----CCeEEEeeCCCeEEEEECCCCC
Q 018784 62 GAVWSCCLDANALFSASGS--ADFTAKLWDALTGDEKHSFEHKHIVRACAFSED----THLLLTGGFEKILRIFDLNRPD 135 (350)
Q Consensus 62 ~~V~~v~~~~~~~~l~s~s--~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~----~~~l~sg~~d~~v~vwd~~~~~ 135 (350)
.+|..++|..-.+.+.|.= ..|.+++=| ...+..++| |..+.|.|- ...|++......|.||.+....
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGd---s~viGqFEh---V~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGD---SKVIGQFEH---VHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCC---ccEeeccce---eeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 4677888864444444431 223322222 123334445 889999875 3356677788899999975211
Q ss_pred -CCCeeecCCCC--------cEEEEEEeCCCCcEEEEEeCCCeEEEEECC--CCceeEeecCCCCeEEEEEecCCcEEEE
Q 018784 136 -APPREVGNSSG--------SIRTVAWLHSDQTILSSCTDSGGVRLWDAR--SGKIVQTLETKSPVTSAEVSRDGRYITT 204 (350)
Q Consensus 136 -~~~~~~~~~~~--------~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 204 (350)
...+....... -...+.|.|....+.+-...| .-.+.+++ +.+....++..+-|.+.+|.+||+.|+.
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~d-vSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARD-VSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCc-eeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEE
Confidence 11111111111 123355665444443333343 33445554 3455566778888999999999988877
Q ss_pred EcCC--cEEEEECC
Q 018784 205 ADGS--SVKFWDAN 216 (350)
Q Consensus 205 ~~~~--~i~vwd~~ 216 (350)
+-+. +-.+||-.
T Consensus 173 AvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 173 AVGSSLHSYIWDSA 186 (671)
T ss_pred EeCCeEEEEEecCc
Confidence 6554 45788854
No 413
>PRK10115 protease 2; Provisional
Probab=92.74 E-value=12 Score=37.50 Aligned_cols=191 Identities=11% Similarity=0.019 Sum_probs=95.6
Q ss_pred cEeEEEEcCCCCeEEEe-----eCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCC-----CeEEEE
Q 018784 104 IVRACAFSEDTHLLLTG-----GFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDS-----GGVRLW 173 (350)
Q Consensus 104 ~V~~~~~~~~~~~l~sg-----~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~d-----g~i~iw 173 (350)
.+..+.++|++++|+-+ +....|++-|+.++......+... -..++|.++++.++.+..++ ..|..+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 35677889999988754 233458888887654322222221 14588987777777765433 368888
Q ss_pred ECCCC--ceeEeecC-CCCeE-EEEEecCCcEEEEE----cCCcEEEEECCC--cceeeeeecCCCCceeEecCCCCcEE
Q 018784 174 DARSG--KIVQTLET-KSPVT-SAEVSRDGRYITTA----DGSSVKFWDANH--FGLVKGYNMPCNTESASLEPKLGNIF 243 (350)
Q Consensus 174 d~~~~--~~~~~~~~-~~~v~-~~~~~~~~~~l~~~----~~~~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (350)
++.++ +....+.. ..... ....+.++++++.. .++.+.+++... .........+... ........+.++
T Consensus 205 ~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ly 283 (686)
T PRK10115 205 TIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDH-EYSLDHYQHRFY 283 (686)
T ss_pred ECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCC-EEEEEeCCCEEE
Confidence 88877 32222222 22222 33334477765432 245788888432 2211111111111 111111122333
Q ss_pred EEecCC---CeEEEEEcccCeeEEeecCC-C-cCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784 244 IAGGED---MWVHVFDFHTGEQIGCNKGH-H-GPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (350)
Q Consensus 244 ~sg~~d---~~i~v~d~~~~~~~~~~~~h-~-~~v~~l~~sp~~~~lasgs~Dg~v~vw~~ 299 (350)
+....+ ..|...++........+..+ . ..|..+.+. .+.++++...++.-+++-+
T Consensus 284 ~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 284 LRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred EEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 332222 23333344421222333344 2 357777776 3356667777777666544
No 414
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.70 E-value=3.5 Score=40.14 Aligned_cols=105 Identities=19% Similarity=0.335 Sum_probs=65.7
Q ss_pred EECCCCcEEEEeeCCCeEEEeeCCCCCeee--eeeccccEeEEEE--cCCCCeEEEeeCCCeEEEEECCCCC-------C
Q 018784 68 CLDANALFSASGSADFTAKLWDALTGDEKH--SFEHKHIVRACAF--SEDTHLLLTGGFEKILRIFDLNRPD-------A 136 (350)
Q Consensus 68 ~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~--~~~h~~~V~~~~~--~~~~~~l~sg~~d~~v~vwd~~~~~-------~ 136 (350)
.-+.-++..+.-+.-..+.|||...+.... .+...+.|..++| .|+++.+++.|..+.|.++.-.... .
T Consensus 36 ~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w 115 (631)
T PF12234_consen 36 SGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSW 115 (631)
T ss_pred eecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccc
Confidence 333445554445556789999997776333 2345778999988 5799999999999999999642111 0
Q ss_pred -CCee--ecC-CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEEC
Q 018784 137 -PPRE--VGN-SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDA 175 (350)
Q Consensus 137 -~~~~--~~~-~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~ 175 (350)
+.+. ... ...+|.+..|..+ +.++++++ +.+.|+|-
T Consensus 116 ~~i~~i~i~~~T~h~Igds~Wl~~-G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 116 APIRKIDISSHTPHPIGDSIWLKD-GTLVVGSG--NQLFVFDK 155 (631)
T ss_pred ceeEEEEeecCCCCCccceeEecC-CeEEEEeC--CEEEEECC
Confidence 1111 111 2245777888754 44444433 57888874
No 415
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.38 E-value=0.045 Score=53.63 Aligned_cols=158 Identities=17% Similarity=0.186 Sum_probs=88.4
Q ss_pred ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEE-----------EECCCCcEEEEeeCCCeEE
Q 018784 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSC-----------CLDANALFSASGSADFTAK 86 (350)
Q Consensus 18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v-----------~~~~~~~~l~s~s~Dg~v~ 86 (350)
++.-|.++|+-+...++-.+-.++++++....+-.. ..+.+|...+.-+ .++|||..+|.++.||.++
T Consensus 182 ~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~ 260 (1283)
T KOG1916|consen 182 DPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVG 260 (1283)
T ss_pred CcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccc
Confidence 345667778777777777777888888755333222 4556677665433 3689999999999999999
Q ss_pred EeeCC-CCC----eeeee-eccc--cEeEEEEcCCC---------CeEEEe-eCCCeEEEEECCCCCCCCe-------ee
Q 018784 87 LWDAL-TGD----EKHSF-EHKH--IVRACAFSEDT---------HLLLTG-GFEKILRIFDLNRPDAPPR-------EV 141 (350)
Q Consensus 87 vWd~~-~~~----~~~~~-~h~~--~V~~~~~~~~~---------~~l~sg-~~d~~v~vwd~~~~~~~~~-------~~ 141 (350)
.|.+. +++ +++.+ .|.+ .|+.+ |+.+. .+++++ ..++.+++|.....++... ..
T Consensus 261 f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll~~~~d~v~iV 339 (1283)
T KOG1916|consen 261 FYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLLDKLIDGVQIV 339 (1283)
T ss_pred eeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhhhhhcccceEee
Confidence 99864 333 22222 2442 24444 44332 234444 4467789998654443311 11
Q ss_pred cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC
Q 018784 142 GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177 (350)
Q Consensus 142 ~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~ 177 (350)
+.|.+.++......---..+++-.-|++|++|.-+.
T Consensus 340 ~p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 340 GPHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred cCCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 233333322110000001133445678888887554
No 416
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.08 E-value=1.9 Score=44.09 Aligned_cols=112 Identities=16% Similarity=0.112 Sum_probs=72.1
Q ss_pred CCeEEEEEecCCcEEEE---EcCCcEEEEECCCcceeeeee------------cCCCCceeEecCCCCcEEEEecCCCeE
Q 018784 188 SPVTSAEVSRDGRYITT---ADGSSVKFWDANHFGLVKGYN------------MPCNTESASLEPKLGNIFIAGGEDMWV 252 (350)
Q Consensus 188 ~~v~~~~~~~~~~~l~~---~~~~~i~vwd~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~sg~~d~~i 252 (350)
.++..+.+.+|+...++ .++-.|.+||++++....... .........+.|......++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 34555666677655432 334468899998754332111 112233344555555667888889999
Q ss_pred EEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCCcEEEecC
Q 018784 253 HVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQT 299 (350)
Q Consensus 253 ~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~ 299 (350)
++..+........--......++++|+|.|+.++.|-..|++..|.-
T Consensus 181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P 227 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEP 227 (1405)
T ss_pred hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeec
Confidence 98877543332222233456899999999999999999999999853
No 417
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.03 E-value=0.73 Score=27.32 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=24.9
Q ss_pred CcEEEEEEeCCCC--cEEEEEeCCCeEEEEECCC
Q 018784 146 GSIRTVAWLHSDQ--TILSSCTDSGGVRLWDARS 177 (350)
Q Consensus 146 ~~v~~~~~~~~~~--~~~~s~~~dg~i~iwd~~~ 177 (350)
+.++++.|+|... .+++-...-+.|.++|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999997554 5666666778999999995
No 418
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.93 E-value=5 Score=40.03 Aligned_cols=35 Identities=20% Similarity=0.367 Sum_probs=27.9
Q ss_pred CCcCEEEEEEcCC---CCEEEEecCCCcEEEecCCCCC
Q 018784 269 HHGPVHCVRFSPG---GESYASGSEDGTIRIWQTNPPN 303 (350)
Q Consensus 269 h~~~v~~l~~sp~---~~~lasgs~Dg~v~vw~~~~~~ 303 (350)
+...|..+.|+|. +..|+.=..|+++|+||+..+.
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 4456889999987 4778888899999999986444
No 419
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.81 E-value=16 Score=36.94 Aligned_cols=147 Identities=18% Similarity=0.247 Sum_probs=82.8
Q ss_pred EEEEEeCCCeEEEEECCCCceeEeecCCCCeE----------------EEEEecCCcEEEEEc----------CCcEEEE
Q 018784 160 ILSSCTDSGGVRLWDARSGKIVQTLETKSPVT----------------SAEVSRDGRYITTAD----------GSSVKFW 213 (350)
Q Consensus 160 ~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~----------------~~~~~~~~~~l~~~~----------~~~i~vw 213 (350)
.++.++.|+.+.-.|.++|+.+..+..+..+. +--.--++..++.+. ++.|+-+
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 45556778999999999999887765433221 100111455555432 4679999
Q ss_pred ECCCcceeeeeecCC------------------CC-ceeEecCCCCcEEEE-e----------------cCCCeEEEEEc
Q 018784 214 DANHFGLVKGYNMPC------------------NT-ESASLEPKLGNIFIA-G----------------GEDMWVHVFDF 257 (350)
Q Consensus 214 d~~~~~~~~~~~~~~------------------~~-~~~~~~~~~~~~l~s-g----------------~~d~~i~v~d~ 257 (350)
|.++++.+-.+.... +. ...++.+..+.+++- | -..+.|.-.|.
T Consensus 342 Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~ 421 (764)
T TIGR03074 342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDA 421 (764)
T ss_pred ECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeC
Confidence 999988876654310 00 112222222222221 1 11345666777
Q ss_pred ccCeeEEeecC-CCc--------CEEEEEEcC-CC---CEEEEecCCCcEEEecCCCCCccc
Q 018784 258 HTGEQIGCNKG-HHG--------PVHCVRFSP-GG---ESYASGSEDGTIRIWQTNPPNHEE 306 (350)
Q Consensus 258 ~~~~~~~~~~~-h~~--------~v~~l~~sp-~~---~~lasgs~Dg~v~vw~~~~~~~~~ 306 (350)
++|+..=.++. |++ ...-+.+.. +| +.++.++.+|.+++.|..+.+.+-
T Consensus 422 ~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 422 TTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred CCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 88876544432 221 111122322 55 378899999999999988766553
No 420
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.66 E-value=5 Score=39.38 Aligned_cols=68 Identities=9% Similarity=0.006 Sum_probs=45.3
Q ss_pred CCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEEC
Q 018784 62 GAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDL 131 (350)
Q Consensus 62 ~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~ 131 (350)
..+.++.-+|.++.++++..||+|++++..............+-..+.|...| |++...|+.+..|.-
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWKE 82 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheeec
Confidence 34566777899999999999999999997654432222222233445565555 666667777777753
No 421
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=91.16 E-value=11 Score=33.88 Aligned_cols=57 Identities=25% Similarity=0.350 Sum_probs=40.5
Q ss_pred CCcEEEEecCCCeEEEEEcccCeeEE---e-ecCCCcCEEEEEEcCCCCEEEEecCCCcEE
Q 018784 239 LGNIFIAGGEDMWVHVFDFHTGEQIG---C-NKGHHGPVHCVRFSPGGESYASGSEDGTIR 295 (350)
Q Consensus 239 ~~~~l~sg~~d~~i~v~d~~~~~~~~---~-~~~h~~~v~~l~~sp~~~~lasgs~Dg~v~ 295 (350)
.+.+|++.-..+.|....+.++..+. . +......+..+++.|||.++++-..+|.|+
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 35677777777889888887554322 2 234555899999999999998888888875
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.12 E-value=2 Score=43.94 Aligned_cols=133 Identities=14% Similarity=0.078 Sum_probs=80.0
Q ss_pred CccE--EEEEeCCCCeeEeeCCCCce-----eeeccCcc----CC--eEEEEECCCC-cEEEEeeCCCeEEEeeCCCCC-
Q 018784 30 DGFF--LVSASKDSSPMLRNGETGDW-----IGTFEGHK----GA--VWSCCLDANA-LFSASGSADFTAKLWDALTGD- 94 (350)
Q Consensus 30 dg~~--lasgs~d~~v~iw~~~~~~~-----~~~l~gH~----~~--V~~v~~~~~~-~~l~s~s~Dg~v~vWd~~~~~- 94 (350)
|+.+ ++..+++..|..+|+.+... ..-|..|. .. ..++.|.|.- ...+....|+.|++.-+....
T Consensus 111 D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~ 190 (1405)
T KOG3630|consen 111 DATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ 190 (1405)
T ss_pred CCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhh
Confidence 6543 34445545677788754321 12223332 22 2345566543 345667889999998764332
Q ss_pred eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCC--CCeeecCCCCcEEEEEEeCCCCcEEE
Q 018784 95 EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSGSIRTVAWLHSDQTILS 162 (350)
Q Consensus 95 ~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~ 162 (350)
....+.....+++++|+|-|+.++.|-..|++.-|...-... ...........|.++.|......+++
T Consensus 191 ~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 191 NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 233345667889999999999999999999999986542210 00111112467999999876554433
No 423
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.03 E-value=1.3 Score=25.75 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=26.8
Q ss_pred CCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEE
Q 018784 156 SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSA 193 (350)
Q Consensus 156 ~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~ 193 (350)
+++.++++...+++|.++|..+++.+..+........+
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i 39 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGV 39 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceE
Confidence 35567777777889999999888877776654333333
No 424
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=90.67 E-value=10 Score=32.62 Aligned_cols=142 Identities=15% Similarity=0.059 Sum_probs=82.5
Q ss_pred CeEEEEECCCCcEEEEee---CCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEE-CCCCCCCC
Q 018784 63 AVWSCCLDANALFSASGS---ADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFD-LNRPDAPP 138 (350)
Q Consensus 63 ~V~~v~~~~~~~~l~s~s---~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd-~~~~~~~~ 138 (350)
.+...++++++..+|... ....+.++.. +.....+.-...+..-.|.+++...+....+...+++. ...+....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 577889999998665443 3344555543 33222222223567778899977666666666777773 22222222
Q ss_pred eeecCC--CCcEEEEEEeCCCCcEEEEE--eCCCeEEEEECC---CCce------eEeec-CCCCeEEEEEecCCcEEEE
Q 018784 139 REVGNS--SGSIRTVAWLHSDQTILSSC--TDSGGVRLWDAR---SGKI------VQTLE-TKSPVTSAEVSRDGRYITT 204 (350)
Q Consensus 139 ~~~~~~--~~~v~~~~~~~~~~~~~~s~--~~dg~i~iwd~~---~~~~------~~~~~-~~~~v~~~~~~~~~~~l~~ 204 (350)
...... .+.|..+.+++++.++++.. ..++.|.+=-+. .+.. +.... ....+..+.|.+++.+++.
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~ 182 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVL 182 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEE
Confidence 222111 12799999998887776654 334667766542 2211 11111 1357889999999988876
Q ss_pred Ec
Q 018784 205 AD 206 (350)
Q Consensus 205 ~~ 206 (350)
..
T Consensus 183 ~~ 184 (253)
T PF10647_consen 183 GR 184 (253)
T ss_pred eC
Confidence 54
No 425
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.66 E-value=0.91 Score=26.92 Aligned_cols=31 Identities=32% Similarity=0.611 Sum_probs=25.5
Q ss_pred cCEEEEEEcCCC---CEEEEecCCCcEEEecCCC
Q 018784 271 GPVHCVRFSPGG---ESYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 271 ~~v~~l~~sp~~---~~lasgs~Dg~v~vw~~~~ 301 (350)
+.|.++.|||.. .+|+-.-.-+.|.|+|++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999854 4888888889999999873
No 426
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=90.47 E-value=14 Score=33.81 Aligned_cols=139 Identities=17% Similarity=0.205 Sum_probs=71.5
Q ss_pred EEEEECCCCcEEEEee-----------CCC-eEEEeeCCCC--C--eeeee-eccccEeEEEEcCCCCeEEEeeCCCeEE
Q 018784 65 WSCCLDANALFSASGS-----------ADF-TAKLWDALTG--D--EKHSF-EHKHIVRACAFSEDTHLLLTGGFEKILR 127 (350)
Q Consensus 65 ~~v~~~~~~~~l~s~s-----------~Dg-~v~vWd~~~~--~--~~~~~-~h~~~V~~~~~~~~~~~l~sg~~d~~v~ 127 (350)
..++|.++|.++++-. ..+ .|.+++-..+ + ....+ ..-.....+++.+++ + +.+.....++
T Consensus 17 ~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-l-yV~~~~~i~~ 94 (367)
T TIGR02604 17 IAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-V-YVATPPDILF 94 (367)
T ss_pred ceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-E-EEeCCCeEEE
Confidence 4678888888777642 223 6777764432 2 12222 223456889999988 4 4445554444
Q ss_pred EEECCCCC-C--CCe-e---ecC----CCCcEEEEEEeCCCCcEEEEEeCC-------------------CeEEEEECCC
Q 018784 128 IFDLNRPD-A--PPR-E---VGN----SSGSIRTVAWLHSDQTILSSCTDS-------------------GGVRLWDARS 177 (350)
Q Consensus 128 vwd~~~~~-~--~~~-~---~~~----~~~~v~~~~~~~~~~~~~~s~~~d-------------------g~i~iwd~~~ 177 (350)
+.|..... . ..+ . ... +......+.|.+ ++.+.++-+.. +.|.-+|...
T Consensus 95 ~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 95 LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 54543211 0 111 1 111 122355677765 44555543311 3455555554
Q ss_pred CceeEeecCCCCeEEEEEecCCcEEEEEc
Q 018784 178 GKIVQTLETKSPVTSAEVSRDGRYITTAD 206 (350)
Q Consensus 178 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 206 (350)
++.............++|+++|+++++..
T Consensus 174 ~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 174 GKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 44322222223345788999998887654
No 427
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.38 E-value=8.7 Score=36.09 Aligned_cols=138 Identities=13% Similarity=0.175 Sum_probs=82.2
Q ss_pred EEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCC--------cEEEEeeCCCeEEEeeCC-CCCeeeeeeccc
Q 018784 33 FLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANA--------LFSASGSADFTAKLWDAL-TGDEKHSFEHKH 103 (350)
Q Consensus 33 ~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~--------~~l~s~s~Dg~v~vWd~~-~~~~~~~~~h~~ 103 (350)
++..|..-.++.=.|++.|+.+-+..-|...| |.+.|.. +.|+. -+|..|.--|.. .+..+.....+.
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvG-lS~~svFrIDPR~~gNKi~v~esKd 558 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVG-LSDYSVFRIDPRARGNKIKVVESKD 558 (776)
T ss_pred EEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEe-ecccceEEecccccCCceeeeeehh
Confidence 34555566666667888899988888887664 5666532 34443 344444444432 232222222222
Q ss_pred cEeEEEE----cCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECC
Q 018784 104 IVRACAF----SEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176 (350)
Q Consensus 104 ~V~~~~~----~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~ 176 (350)
.+.--.| .-...++|.+|..|-||+||--..... ..+......|..+....++..++++|- .++.+-|++
T Consensus 559 Y~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAK-talP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~ 632 (776)
T COG5167 559 YKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAK-TALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVP 632 (776)
T ss_pred ccccccccccccccCceEEEecCCCceeeehhhcchhh-hcCcccccceeeeEeecCCcEEEEeec--ceEEEEecc
Confidence 2222223 234458999999999999996432211 222334556777777777888888885 478888875
No 428
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.37 E-value=3.6 Score=41.05 Aligned_cols=33 Identities=15% Similarity=0.301 Sum_probs=21.8
Q ss_pred ccEeEEEEcCC---CCeEEEeeCCCeEEEEECCCCC
Q 018784 103 HIVRACAFSED---THLLLTGGFEKILRIFDLNRPD 135 (350)
Q Consensus 103 ~~V~~~~~~~~---~~~l~sg~~d~~v~vwd~~~~~ 135 (350)
-.|..+.|||. +..|+.=..|+++|+||+..+.
T Consensus 147 ~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 147 LEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred ceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 34667777765 3566666777777777776544
No 429
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.74 E-value=17 Score=33.72 Aligned_cols=187 Identities=12% Similarity=0.072 Sum_probs=79.7
Q ss_pred CcEEEE-eeCCCeEEEeeCCCCCe---e-eeee----cc----ccEeEEEEcCCCCeEEEe--eCC----CeEEEEECCC
Q 018784 73 ALFSAS-GSADFTAKLWDALTGDE---K-HSFE----HK----HIVRACAFSEDTHLLLTG--GFE----KILRIFDLNR 133 (350)
Q Consensus 73 ~~~l~s-~s~Dg~v~vWd~~~~~~---~-~~~~----h~----~~V~~~~~~~~~~~l~sg--~~d----~~v~vwd~~~ 133 (350)
-++|+. |=....|.|.|+.+... + .+++ +. .....+..-|+|.+++|+ ..+ |.+.+.|-++
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t 166 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET 166 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc
Confidence 344444 44778999999874321 1 1222 11 122334446788888874 222 4466666553
Q ss_pred CCCCCeeecC--CCCcEEEEEEeCCCCcEEEEEe--------------------CCCeEEEEECCCCceeEeecCCC---
Q 018784 134 PDAPPREVGN--SSGSIRTVAWLHSDQTILSSCT--------------------DSGGVRLWDARSGKIVQTLETKS--- 188 (350)
Q Consensus 134 ~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~s~~--------------------~dg~i~iwd~~~~~~~~~~~~~~--- 188 (350)
.+........ ...--+.+-|.+ ...+++|.. .-+++.+||.++.+.++++....
T Consensus 167 f~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 167 FEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp --EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred ccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 3222111111 112233343433 344444432 23589999999999999988642
Q ss_pred CeEEEEEe--cCCcEE--EEEcCCcEEEE-ECCCc--ceeeeeec--------------------CCCCceeEecCCCCc
Q 018784 189 PVTSAEVS--RDGRYI--TTADGSSVKFW-DANHF--GLVKGYNM--------------------PCNTESASLEPKLGN 241 (350)
Q Consensus 189 ~v~~~~~~--~~~~~l--~~~~~~~i~vw-d~~~~--~~~~~~~~--------------------~~~~~~~~~~~~~~~ 241 (350)
-...+.|. |+..+- .++-..+|..| ..... ...+.... +.....+.++.++.-
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrf 325 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRF 325 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-E
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCE
Confidence 24456665 334332 22333344333 21221 11111111 222344556666677
Q ss_pred EEEEecCCCeEEEEEcccC
Q 018784 242 IFIAGGEDMWVHVFDFHTG 260 (350)
Q Consensus 242 ~l~sg~~d~~i~v~d~~~~ 260 (350)
+++++..+|.|+.||+.+.
T Consensus 326 LYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 326 LYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEETTTTEEEEEE-SST
T ss_pred EEEEcccCCcEEEEecCCC
Confidence 8888999999999999764
No 430
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.70 E-value=6.3 Score=36.48 Aligned_cols=34 Identities=12% Similarity=-0.024 Sum_probs=27.6
Q ss_pred cEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCC
Q 018784 104 IVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP 137 (350)
Q Consensus 104 ~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~ 137 (350)
.+.++..+|++++.++...=|.|.++|+......
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv 342 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV 342 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh
Confidence 4678899999998888777799999999765433
No 431
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.47 E-value=20 Score=32.87 Aligned_cols=11 Identities=36% Similarity=0.821 Sum_probs=8.0
Q ss_pred CCcEEEEecCC
Q 018784 239 LGNIFIAGGED 249 (350)
Q Consensus 239 ~~~~l~sg~~d 249 (350)
.+++++.|+.+
T Consensus 279 ~~~iyv~GG~~ 289 (376)
T PRK14131 279 NGVLLVAGGAN 289 (376)
T ss_pred CCEEEEeeccC
Confidence 46788888854
No 432
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.84 E-value=4.2 Score=37.48 Aligned_cols=163 Identities=10% Similarity=0.051 Sum_probs=92.6
Q ss_pred eeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCee-eee-ec-cc----cEe-EEEEcCCCCeEEEeeCCCeE
Q 018784 55 GTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEK-HSF-EH-KH----IVR-ACAFSEDTHLLLTGGFEKIL 126 (350)
Q Consensus 55 ~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~-~~~-~h-~~----~V~-~~~~~~~~~~l~sg~~d~~v 126 (350)
+.+..-...|..+-+.||++.+..-+. ..+.|+++...... ..+ .. ++ .|. ++..-..|.-++.++.||.|
T Consensus 214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v 292 (733)
T COG4590 214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV 292 (733)
T ss_pred hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence 334444455666778899987765433 66777776544311 111 11 11 122 22223345668888999999
Q ss_pred EEE-ECCCCCCCCe-eecCC---CCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcE
Q 018784 127 RIF-DLNRPDAPPR-EVGNS---SGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRY 201 (350)
Q Consensus 127 ~vw-d~~~~~~~~~-~~~~~---~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 201 (350)
.-| |+.+...+.. ..... ...+..+. -....+-+++-+..|++.++-..+.+.+..-........+.++|++.+
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~-pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~ 371 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLL-PETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAY 371 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeec-cccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccch
Confidence 888 5544332211 11000 11121111 112344566777778888876655554433333345667889999999
Q ss_pred EEEEcCCcEEEEECCCcc
Q 018784 202 ITTADGSSVKFWDANHFG 219 (350)
Q Consensus 202 l~~~~~~~i~vwd~~~~~ 219 (350)
+..-+.+.++++.+.+..
T Consensus 372 Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 372 LLSEDQGKIRLAQLENRN 389 (733)
T ss_pred heeecCCceEEEEecCCC
Confidence 999889999999876543
No 433
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=87.82 E-value=23 Score=32.88 Aligned_cols=89 Identities=22% Similarity=0.329 Sum_probs=53.5
Q ss_pred EEEEcCCCCeEEEeeCCCeEEE---EECCCCC-CCC-e---eec----CCCCcEEEEEEeC----------CCCcEEEEE
Q 018784 107 ACAFSEDTHLLLTGGFEKILRI---FDLNRPD-APP-R---EVG----NSSGSIRTVAWLH----------SDQTILSSC 164 (350)
Q Consensus 107 ~~~~~~~~~~l~sg~~d~~v~v---wd~~~~~-~~~-~---~~~----~~~~~v~~~~~~~----------~~~~~~~s~ 164 (350)
.++.+|++..|+.+..++.+-+ |+..... ... . ..+ .....|+++.|.| ++..+++.|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4577899999988877777665 5432111 111 0 011 1114678877654 245788999
Q ss_pred eCCCeEEEEECCCCce-eEeecCCCCeEEEEEe
Q 018784 165 TDSGGVRLWDARSGKI-VQTLETKSPVTSAEVS 196 (350)
Q Consensus 165 ~~dg~i~iwd~~~~~~-~~~~~~~~~v~~~~~~ 196 (350)
..+|.|++|.. +|.. +.+.-++.+|..+.+.
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 99999999985 4443 2333345666666553
No 434
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=87.56 E-value=3.7 Score=39.76 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=27.9
Q ss_pred CeEEEEECC----CCcEEEEeeCCCeEEEeeCCCCCeeeee
Q 018784 63 AVWSCCLDA----NALFSASGSADFTAKLWDALTGDEKHSF 99 (350)
Q Consensus 63 ~V~~v~~~~----~~~~l~s~s~Dg~v~vWd~~~~~~~~~~ 99 (350)
.+..++++. +..++++-+.|+++|+||+.+++++.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 345556665 6789999999999999999999885544
No 435
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.53 E-value=6.8 Score=32.89 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=38.7
Q ss_pred CccEEEEEeCCCCeeEeeCCCCceeee-------cc-------CccCCeEEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784 30 DGFFLVSASKDSSPMLRNGETGDWIGT-------FE-------GHKGAVWSCCLDANALFSASGSADFTAKLWDA 90 (350)
Q Consensus 30 dg~~lasgs~d~~v~iw~~~~~~~~~~-------l~-------gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~ 90 (350)
.+.+|+.-+.+|.+++||+.+++.+.. +. .....|..+.++.+|.-+++-+ +|....|+.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 577899999999999999998876432 11 2334555566666665555433 345555554
No 436
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=87.08 E-value=5.9 Score=31.82 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=25.4
Q ss_pred cCEEEEEEcCCC------CEEEEecCCCcEEEecCC
Q 018784 271 GPVHCVRFSPGG------ESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 271 ~~v~~l~~sp~~------~~lasgs~Dg~v~vw~~~ 300 (350)
..|.+++|||-| .+||.-..++.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 378999999954 578999999999999754
No 437
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.01 E-value=31 Score=36.12 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=21.6
Q ss_pred CCCcEEEEecCCCeEEEEEcccCee
Q 018784 238 KLGNIFIAGGEDMWVHVFDFHTGEQ 262 (350)
Q Consensus 238 ~~~~~l~sg~~d~~i~v~d~~~~~~ 262 (350)
..+..++++..|+.+..||...+..
T Consensus 244 ~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 244 RDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred cCCceEEEEEecCCEEeeecCCCce
Confidence 4578999999999999999988754
No 438
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.92 E-value=26 Score=32.46 Aligned_cols=144 Identities=12% Similarity=0.023 Sum_probs=78.8
Q ss_pred EEEEECCCCcEEEEeeCCCeEEEeeCCCCC-eeeeeeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCC----CCe
Q 018784 65 WSCCLDANALFSASGSADFTAKLWDALTGD-EKHSFEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA----PPR 139 (350)
Q Consensus 65 ~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~-~~~~~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~----~~~ 139 (350)
..+...+++.+++.+..-..++-||..... ..........+.++.+.+++.+++++ .+|.+..= ...+.. ...
T Consensus 242 ~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~ 319 (398)
T PLN00033 242 STVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFE 319 (398)
T ss_pred eeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCccccccee
Confidence 344556777776655444444445532211 22223344568899999999877765 44554332 222210 111
Q ss_pred eecC--CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec----CCCCeEEEEEecCCcEEEEEcCCcEEEE
Q 018784 140 EVGN--SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE----TKSPVTSAEVSRDGRYITTADGSSVKFW 213 (350)
Q Consensus 140 ~~~~--~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~i~vw 213 (350)
.... ....+..+.+.+ ++.++++| ..|.+.... ..|+...... .......+.|.++++.++.+.+|.|--|
T Consensus 320 ~~~~~~~~~~l~~v~~~~-d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 320 EADIKSRGFGILDVGYRS-KKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ecccCCCCcceEEEEEcC-CCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 1111 122477787764 44455554 557666553 4455433332 1346778888888899999988876544
No 439
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=86.91 E-value=0.16 Score=46.64 Aligned_cols=139 Identities=12% Similarity=0.176 Sum_probs=86.8
Q ss_pred EEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEE--EEcCCcEEEEECCCcceeeeeecC
Q 018784 150 TVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYIT--TADGSSVKFWDANHFGLVKGYNMP 227 (350)
Q Consensus 150 ~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~~~~i~vwd~~~~~~~~~~~~~ 227 (350)
...|.+.+..++++|.. -.+..|| +.++....+........++|..++..++ +...+.+.+||+.+...- .+...
T Consensus 39 ~~~w~~e~~nlavaca~-tiv~~YD-~agq~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~g 115 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACAN-TIVIYYD-KAGQVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLESG 115 (615)
T ss_pred eeeEecCCCceehhhhh-hHHHhhh-hhcceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhcc
Confidence 44567777776666654 5788888 4455555555666677788887776543 334678999998753211 11111
Q ss_pred CC-CceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEEEcCCCCEEEEecCCC
Q 018784 228 CN-TESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVRFSPGGESYASGSEDG 292 (350)
Q Consensus 228 ~~-~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~~sp~~~~lasgs~Dg 292 (350)
.. ..+.....+....++.|-..+.+.+|+..+.+.+.....|...+.++++.+.+. .+.++.|.
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~ 180 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDN 180 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHH
Confidence 11 111111223345567777888999999888777655555999999999998764 44445443
No 440
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=86.88 E-value=26 Score=32.56 Aligned_cols=268 Identities=11% Similarity=0.056 Sum_probs=125.6
Q ss_pred CccEEEEEeCCCCeeEeeCCCCcee--e-ecc-CccCCeEEEEECC-----CCcEEEEeeCCCeEEEeeCCCC--C----
Q 018784 30 DGFFLVSASKDSSPMLRNGETGDWI--G-TFE-GHKGAVWSCCLDA-----NALFSASGSADFTAKLWDALTG--D---- 94 (350)
Q Consensus 30 dg~~lasgs~d~~v~iw~~~~~~~~--~-~l~-gH~~~V~~v~~~~-----~~~~l~s~s~Dg~v~vWd~~~~--~---- 94 (350)
+...++.||..|.++||++...... . -|+ .-..+|..+.... +...||. =.-..+.|+.+... .
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 4568999999999999998553311 1 112 1236676665431 2223332 45566666665211 1
Q ss_pred -e---eeeeecc--ccEeEEEEc----CC-CCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEE
Q 018784 95 -E---KHSFEHK--HIVRACAFS----ED-THLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSS 163 (350)
Q Consensus 95 -~---~~~~~h~--~~V~~~~~~----~~-~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s 163 (350)
. ...+.|. ..-..+..- .. ..+++.=+-||.+.+|+-+... .....+.---...+.|.+.... +++
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~~llPgPl~Y~~~tDs-fvt 191 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPDFLLPGPLCYCPRTDS-FVT 191 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCCCCCCcCeEEeecCCE-EEE
Confidence 1 1112332 112222221 12 3677888999999999865321 1111111111223445544443 344
Q ss_pred EeCCCeEEEEECCC--------------------Cc---eeEeecCCCCeEEEEEec---C-CcEEEEEcCCcEEEEECC
Q 018784 164 CTDSGGVRLWDARS--------------------GK---IVQTLETKSPVTSAEVSR---D-GRYITTADGSSVKFWDAN 216 (350)
Q Consensus 164 ~~~dg~i~iwd~~~--------------------~~---~~~~~~~~~~v~~~~~~~---~-~~~l~~~~~~~i~vwd~~ 216 (350)
++.+.++..|.... ++ +-.++....++..+.... . ..+++.+ .+++.+.+..
T Consensus 192 ~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~ 270 (418)
T PF14727_consen 192 ASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDN 270 (418)
T ss_pred ecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCC
Confidence 45556777775321 00 111122223344444322 1 1233322 2344444332
Q ss_pred CcceeeeeecCCCCceeEe-c------CCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCE--EEEEEcCCCCEEEE
Q 018784 217 HFGLVKGYNMPCNTESASL-E------PKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPV--HCVRFSPGGESYAS 287 (350)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~-~------~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v--~~l~~sp~~~~las 287 (350)
+.......+...+.+... . +.....++.++.++.+.||.=.+ ++=..+....+| .-..|..-...+++
T Consensus 271 -G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~l~~~PVal~v~~~~~~~G~IV~ 347 (418)
T PF14727_consen 271 -GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQLPHVPVALSVANFNGLKGLIVS 347 (418)
T ss_pred -CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecCCCCCCEEEEecccCCCCceEEE
Confidence 222222222222222211 1 11123589999999999985321 111111122232 22223334567889
Q ss_pred ecCCCcEEEecCCCCCcc
Q 018784 288 GSEDGTIRIWQTNPPNHE 305 (350)
Q Consensus 288 gs~Dg~v~vw~~~~~~~~ 305 (350)
=+.+|.+.+--+.+....
T Consensus 348 Ls~~G~L~v~YLGTdPs~ 365 (418)
T PF14727_consen 348 LSDEGQLSVSYLGTDPSL 365 (418)
T ss_pred EcCCCcEEEEEeCCCCcc
Confidence 999999999877554433
No 441
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=86.62 E-value=22 Score=31.33 Aligned_cols=197 Identities=13% Similarity=0.166 Sum_probs=106.6
Q ss_pred eeEEEecccCCCccEEEEEeCCCCeeEeeCC------CC-ceeeeccC-----ccCCeEEEEECCCC------------c
Q 018784 19 VVDLFYSPITPDGFFLVSASKDSSPMLRNGE------TG-DWIGTFEG-----HKGAVWSCCLDANA------------L 74 (350)
Q Consensus 19 v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~------~~-~~~~~l~g-----H~~~V~~v~~~~~~------------~ 74 (350)
-+.|+|+| .+.+-++...-++..+||.. .. .++-++.+ -....+.+.|+... .
T Consensus 25 ~WGia~~p---~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 25 AWGLSYRP---GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred cceeEecC---CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 46888887 55577777777889999986 12 22334332 11233444444222 2
Q ss_pred EEEEeeCCCeEEEeeCCCCCe-----eeeeec--cccE-eEEEEcC--CCCeEEEe-eCCCeEEEEECCCCCCCCeeecC
Q 018784 75 FSASGSADFTAKLWDALTGDE-----KHSFEH--KHIV-RACAFSE--DTHLLLTG-GFEKILRIFDLNRPDAPPREVGN 143 (350)
Q Consensus 75 ~l~s~s~Dg~v~vWd~~~~~~-----~~~~~h--~~~V-~~~~~~~--~~~~l~sg-~~d~~v~vwd~~~~~~~~~~~~~ 143 (350)
.++-++.||+|--|...-... ...+.. ...| ..+++.. .+.+|+.+ -..++|.|||-.= ... ...+.
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f-~~~-~~~g~ 179 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF-RPP-PLPGS 179 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc-ccc-cCCCC
Confidence 356678999999998543322 122222 2334 4566653 35667655 4579999998531 100 00000
Q ss_pred C----------CCcE------EEEEEeC--CCCcEEEEEeCCCeEEEEECCCCceeEeecCCCC---eEEEEEec-----
Q 018784 144 S----------SGSI------RTVAWLH--SDQTILSSCTDSGGVRLWDARSGKIVQTLETKSP---VTSAEVSR----- 197 (350)
Q Consensus 144 ~----------~~~v------~~~~~~~--~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~~---v~~~~~~~----- 197 (350)
. .--| .-+.|.. .+.+--+.+..-|.|-++|+. |+.++.+..... -..++..|
T Consensus 180 F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~ 258 (336)
T TIGR03118 180 FIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGS 258 (336)
T ss_pred ccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCC
Confidence 0 0001 1122221 122222334445789999964 777777754332 23455544
Q ss_pred -CCcEEEEE-cCCcEEEEECCCccee
Q 018784 198 -DGRYITTA-DGSSVKFWDANHFGLV 221 (350)
Q Consensus 198 -~~~~l~~~-~~~~i~vwd~~~~~~~ 221 (350)
.+.+|+.- .|++|..||..+++.+
T Consensus 259 ~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 259 LSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred CCCCeEEeecCCceeEEecCCCCcee
Confidence 45677664 4789999998776544
No 442
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=86.28 E-value=20 Score=35.61 Aligned_cols=112 Identities=11% Similarity=0.014 Sum_probs=73.0
Q ss_pred eEEEEEC--CCCcEEEEeeCCCeEEEeeCCC-------C-------------CeeeeeeccccEeEEEEc--CCCCeEEE
Q 018784 64 VWSCCLD--ANALFSASGSADFTAKLWDALT-------G-------------DEKHSFEHKHIVRACAFS--EDTHLLLT 119 (350)
Q Consensus 64 V~~v~~~--~~~~~l~s~s~Dg~v~vWd~~~-------~-------------~~~~~~~h~~~V~~~~~~--~~~~~l~s 119 (350)
|+.+.+. .....|+.+..||.|.+|...+ . ++...+.....+++++++ ...++||+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 4444433 3456788899999999996421 1 012233445678999999 88889999
Q ss_pred eeCCCeEEEEECCCC--CCCCeeecCCCCcEEEEEEeCCC----C-cEEEEEeCCCeEEEEEC
Q 018784 120 GGFEKILRIFDLNRP--DAPPREVGNSSGSIRTVAWLHSD----Q-TILSSCTDSGGVRLWDA 175 (350)
Q Consensus 120 g~~d~~v~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~-~~~~s~~~dg~i~iwd~ 175 (350)
++....|.||-.... .........+...|-++.|.+.+ + ..+++++-.|.+.+|++
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 988888998865432 11111112344567888888654 2 26677778898888877
No 443
>PRK10115 protease 2; Provisional
Probab=86.14 E-value=39 Score=33.84 Aligned_cols=230 Identities=13% Similarity=0.079 Sum_probs=106.1
Q ss_pred cCCCccEEEEEeC-CC----CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCC------CeEEEeeCCCCC-
Q 018784 27 ITPDGFFLVSASK-DS----SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSAD------FTAKLWDALTGD- 94 (350)
Q Consensus 27 ~s~dg~~lasgs~-d~----~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~D------g~v~vWd~~~~~- 94 (350)
++|||++||-+.. +| ++++.|+.+|+.+...-.... ..++|.+|+..|+-...+ ..|..|++.++.
T Consensus 134 ~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~ 211 (686)
T PRK10115 134 ITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS 211 (686)
T ss_pred ECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh
Confidence 4579987765532 23 377888888864322211222 458999888654433222 467778888773
Q ss_pred -eeeeeec-cccEe-EEEEcCCCCeEEEee---CCCeEEEEECCCCCCC-CeeecCCCCcEEEEEEeCCCCcEEEEEeC-
Q 018784 95 -EKHSFEH-KHIVR-ACAFSEDTHLLLTGG---FEKILRIFDLNRPDAP-PREVGNSSGSIRTVAWLHSDQTILSSCTD- 166 (350)
Q Consensus 95 -~~~~~~h-~~~V~-~~~~~~~~~~l~sg~---~d~~v~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~s~~~- 166 (350)
....+.. .+... ....+.++++++..+ .++.+.+++....... ........+....+. +.+..+++....
T Consensus 212 ~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ly~~tn~~ 289 (686)
T PRK10115 212 QDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--HYQHRFYLRSNRH 289 (686)
T ss_pred HCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--eCCCEEEEEEcCC
Confidence 3333332 22222 333454777665433 3456888885432211 122222223333332 223333333222
Q ss_pred --CCeEEEEECCC-CceeEeecC--CCCeEEEEEecCCcEEEEEcCC--cEEEEECCCcceeeeeecCCCCce--eEec-
Q 018784 167 --SGGVRLWDARS-GKIVQTLET--KSPVTSAEVSRDGRYITTADGS--SVKFWDANHFGLVKGYNMPCNTES--ASLE- 236 (350)
Q Consensus 167 --dg~i~iwd~~~-~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~--~i~vwd~~~~~~~~~~~~~~~~~~--~~~~- 236 (350)
...|...++.. ++....+.. ...+..+.+..+.-++....++ .+.++|..+. .+..+.++..... ....
T Consensus 290 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~ 368 (686)
T PRK10115 290 GKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRKTR-EVIGIAFDDPAYVTWIAYNP 368 (686)
T ss_pred CCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCCCC-ceEEecCCCCceEeeecccC
Confidence 12344445442 221122222 2356777777442223333444 3566665432 2333332111111 1122
Q ss_pred -CCCCcEEEEecC---CCeEEEEEcccCe
Q 018784 237 -PKLGNIFIAGGE---DMWVHVFDFHTGE 261 (350)
Q Consensus 237 -~~~~~~l~sg~~---d~~i~v~d~~~~~ 261 (350)
+..+.++++-++ -..+..+|+.+++
T Consensus 369 ~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 369 EPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred CCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 222344444333 4578888887654
No 444
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.10 E-value=23 Score=31.04 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=60.0
Q ss_pred CeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEee------CCCeEEEeeCCCCCeeeeee-----ccccEeEEEE
Q 018784 42 SPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGS------ADFTAKLWDALTGDEKHSFE-----HKHIVRACAF 110 (350)
Q Consensus 42 ~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s------~Dg~v~vWd~~~~~~~~~~~-----h~~~V~~~~~ 110 (350)
.+.+||..+.+|..--.+=++.|..+.|..+.++++.|. ....+..||..+..-...-. -+++|..+.+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~ 96 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTF 96 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEe
Confidence 388999999999876667778899999987778887774 56778889987654211111 2366777776
Q ss_pred cC-CCC-eEEEee---CCCeEEEEECC
Q 018784 111 SE-DTH-LLLTGG---FEKILRIFDLN 132 (350)
Q Consensus 111 ~~-~~~-~l~sg~---~d~~v~vwd~~ 132 (350)
.. ++. +.+.|. .+..|..||-.
T Consensus 97 ~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 97 ISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred eccCCceEEEeceecCCCceEEEEcCC
Confidence 43 333 333332 23457777643
No 445
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=86.06 E-value=26 Score=31.60 Aligned_cols=11 Identities=18% Similarity=0.169 Sum_probs=7.7
Q ss_pred CeEEEEECCCC
Q 018784 124 KILRIFDLNRP 134 (350)
Q Consensus 124 ~~v~vwd~~~~ 134 (350)
..+.+||..+.
T Consensus 168 ~~v~~YDp~t~ 178 (346)
T TIGR03547 168 KNVLSYDPSTN 178 (346)
T ss_pred ceEEEEECCCC
Confidence 46788887653
No 446
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=85.64 E-value=24 Score=30.89 Aligned_cols=142 Identities=15% Similarity=0.162 Sum_probs=83.6
Q ss_pred CCcEEEEeeCCCeEEEeeCCCCCeeee---eeccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCee--ecCCCC
Q 018784 72 NALFSASGSADFTAKLWDALTGDEKHS---FEHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPRE--VGNSSG 146 (350)
Q Consensus 72 ~~~~l~s~s~Dg~v~vWd~~~~~~~~~---~~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~--~~~~~~ 146 (350)
.+++..-+..+.-++|.|+.+...... ++-.+.-+++.. .|++...+..|..+.+.|+.+++.+... .....+
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~ 172 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGG 172 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCC
Confidence 345555667788899999877654333 233343444444 5888888888888899999877655321 111222
Q ss_pred cEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCc---eeEeecCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCcc
Q 018784 147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARSGK---IVQTLETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFG 219 (350)
Q Consensus 147 ~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~ 219 (350)
....++.+ +.....+..|+-+.+-|+.... .+........+.++..+++--+++..+. .+.+-|..+..
T Consensus 173 d~~~v~IS---Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e-gvlivd~s~~s 244 (370)
T COG5276 173 DTHDVAIS---GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE-GVLIVDVSGPS 244 (370)
T ss_pred CceeEEEe---cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc-ceEEEecCCCC
Confidence 22344433 3344455577889999986653 3333333446777777777666654433 34555554443
No 447
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.73 E-value=28 Score=30.98 Aligned_cols=103 Identities=14% Similarity=0.071 Sum_probs=47.9
Q ss_pred CccEEEEEeCCC-----CeeEeeCCCCcee---eec---cCccCCeEEEEECCCCcEEEEeeCC-----CeEEEeeCCCC
Q 018784 30 DGFFLVSASKDS-----SPMLRNGETGDWI---GTF---EGHKGAVWSCCLDANALFSASGSAD-----FTAKLWDALTG 93 (350)
Q Consensus 30 dg~~lasgs~d~-----~v~iw~~~~~~~~---~~l---~gH~~~V~~v~~~~~~~~l~s~s~D-----g~v~vWd~~~~ 93 (350)
++.+.+.|+.++ .+..+|..+.++. ..+ ...... .+++. .++.+.+.||.. ..+..+|+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~-~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFEN-GSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccC-ceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 355666676543 3455666655541 122 111111 12222 245555666542 35777787665
Q ss_pred Ceee--eeeccccEeEEEEcCCCCeEEEeeCCCe----EEEEECCCC
Q 018784 94 DEKH--SFEHKHIVRACAFSEDTHLLLTGGFEKI----LRIFDLNRP 134 (350)
Q Consensus 94 ~~~~--~~~h~~~V~~~~~~~~~~~l~sg~~d~~----v~vwd~~~~ 134 (350)
+-.. .+.............++++.+.|+.++. +.+||+.+.
T Consensus 150 ~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 150 EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 4211 1111111122222345667777776543 457787653
No 448
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.32 E-value=35 Score=31.62 Aligned_cols=138 Identities=11% Similarity=0.035 Sum_probs=71.6
Q ss_pred CCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCC-----eeeeeecc-
Q 018784 29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGD-----EKHSFEHK- 102 (350)
Q Consensus 29 ~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~-----~~~~~~h~- 102 (350)
+||.+++.|..-.-.+-|+.-...+...-..-...+.++.+.+++.+++.+ .+|.+. |....++ ........
T Consensus 248 ~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~ 325 (398)
T PLN00033 248 PDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKS 325 (398)
T ss_pred CCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCC
Confidence 477777766553333334422111222222224567888888888887655 555543 3333332 12222222
Q ss_pred --ccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee---cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEE
Q 018784 103 --HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV---GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLW 173 (350)
Q Consensus 103 --~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iw 173 (350)
..+..+.|.++++.+++ +..|.+....- .++ ..... ..-....+.+.|.+++. .+++ +++|.|.-|
T Consensus 326 ~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~D-~G~-tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~-G~~G~il~~ 396 (398)
T PLN00033 326 RGFGILDVGYRSKKEAWAA-GGSGILLRSTD-GGK-SWKRDKGADNIAANLYSVKFFDDKK-GFVL-GNDGVLLRY 396 (398)
T ss_pred CCcceEEEEEcCCCcEEEE-ECCCcEEEeCC-CCc-ceeEccccCCCCcceeEEEEcCCCc-eEEE-eCCcEEEEe
Confidence 34888999988776554 55666655432 221 11111 12235677888765443 4444 456776554
No 449
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.07 E-value=5.9 Score=22.79 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=21.8
Q ss_pred CcEEEEecCCCeEEEEEcccCeeEEeecC
Q 018784 240 GNIFIAGGEDMWVHVFDFHTGEQIGCNKG 268 (350)
Q Consensus 240 ~~~l~sg~~d~~i~v~d~~~~~~~~~~~~ 268 (350)
..++++...++.|.++|..+++.+..+..
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 34666677788999999988887766553
No 450
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=84.05 E-value=20 Score=30.55 Aligned_cols=137 Identities=21% Similarity=0.206 Sum_probs=67.9
Q ss_pred EEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEeeC---CCeEEEEECCCC--CCCCeeec---CCCCcEEEEEEeCC
Q 018784 86 KLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGGF---EKILRIFDLNRP--DAPPREVG---NSSGSIRTVAWLHS 156 (350)
Q Consensus 86 ~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~~---d~~v~vwd~~~~--~~~~~~~~---~~~~~v~~~~~~~~ 156 (350)
.+||+.+++.+... ...-...+=.+-++|++|.+|+. ...+++++.... ........ ....+=-+..-.+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~- 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP- 127 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC-
Confidence 56888877643321 12222333457789999999875 245888876431 11111110 0111111122233
Q ss_pred CCcEEEEEe-CCCeEEEEECCCC--ceeE--eecC------CCCeEEEEEecCCcEEEEEcCCcEEEEECCCcceeeee
Q 018784 157 DQTILSSCT-DSGGVRLWDARSG--KIVQ--TLET------KSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLVKGY 224 (350)
Q Consensus 157 ~~~~~~s~~-~dg~i~iwd~~~~--~~~~--~~~~------~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~ 224 (350)
++++++.|+ ...+..+|..+.. .... .+.. ..---.+...|+|+++..+..+. .+||..+...++.+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s-~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS-IIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc-EEEeCCCCeEEeeC
Confidence 445554444 4446677765321 1111 1111 01112355679999988776543 56687776554443
No 451
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=83.96 E-value=29 Score=30.54 Aligned_cols=213 Identities=13% Similarity=0.126 Sum_probs=115.9
Q ss_pred EEEEECCCCcEEEEeeCCCeEEEeeCC------CCCe-eeeee------ccccEeEEEEcCCCCe------------EEE
Q 018784 65 WSCCLDANALFSASGSADFTAKLWDAL------TGDE-KHSFE------HKHIVRACAFSEDTHL------------LLT 119 (350)
Q Consensus 65 ~~v~~~~~~~~l~s~s~Dg~v~vWd~~------~~~~-~~~~~------h~~~V~~~~~~~~~~~------------l~s 119 (350)
|.++++|.+.+-++...-+...++|.. ..+. +.++. ....++.+.|+....+ ++-
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 788999999998988888999999975 1221 22222 1235677777644333 566
Q ss_pred eeCCCeEEEEECCCCCC---CC-eeec-CCCCcEEE-EEEe--CCCCcEEEEEeCCCeEEEEECCCCceeEe--ecC---
Q 018784 120 GGFEKILRIFDLNRPDA---PP-REVG-NSSGSIRT-VAWL--HSDQTILSSCTDSGGVRLWDARSGKIVQT--LET--- 186 (350)
Q Consensus 120 g~~d~~v~vwd~~~~~~---~~-~~~~-~~~~~v~~-~~~~--~~~~~~~~s~~~dg~i~iwd~~~~~~~~~--~~~--- 186 (350)
++.||+|.-|...-... .. .... ...+.++. ++.. .....+.++--..++|.++|-.=.+.... +..
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i 185 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL 185 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence 78899999998532111 11 1111 11233433 2222 22445566666678899888432221100 000
Q ss_pred ---CCCeEEEEEecCCcEEEE--------------EcCCcEEEEECCCcceeeeeecCC---CCceeEe-----cCCCCc
Q 018784 187 ---KSPVTSAEVSRDGRYITT--------------ADGSSVKFWDANHFGLVKGYNMPC---NTESASL-----EPKLGN 241 (350)
Q Consensus 187 ---~~~v~~~~~~~~~~~l~~--------------~~~~~i~vwd~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~ 241 (350)
..+.. +.-. .++++++ ..-+.|.+||+.. ..++.+.... .+.-+.. -...+.
T Consensus 186 PagyAPFn-Iqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G-~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 186 PAGYAPFN-VQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG-QLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCcc-eEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCCC-cEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 01111 1000 1222222 1225789998753 4444443221 1222222 223466
Q ss_pred EEEEecCCCeEEEEEcccCeeEEeecCCC------cCEEEEEEcC
Q 018784 242 IFIAGGEDMWVHVFDFHTGEQIGCNKGHH------GPVHCVRFSP 280 (350)
Q Consensus 242 ~l~sg~~d~~i~v~d~~~~~~~~~~~~h~------~~v~~l~~sp 280 (350)
+|+--=-||+|..||..+|+.+..+.... .-.|.|.|..
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 77766679999999999998877765432 2468888875
No 452
>PRK13684 Ycf48-like protein; Provisional
Probab=83.83 E-value=33 Score=30.93 Aligned_cols=148 Identities=10% Similarity=0.065 Sum_probs=80.7
Q ss_pred cCCeEEEEECCCCcEEEEeeCCCeEE-EeeCCCCCeeeee--eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCC
Q 018784 61 KGAVWSCCLDANALFSASGSADFTAK-LWDALTGDEKHSF--EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP 137 (350)
Q Consensus 61 ~~~V~~v~~~~~~~~l~s~s~Dg~v~-vWd~~~~~~~~~~--~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~ 137 (350)
...+..+.+.+++.+++.+ ..|.+. .++-. ++.-..+ .-...++++.+.+++..++.+ ..|.+++=..+.+..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 4567888888888776654 445443 23321 1211111 223568899999998876654 4566543222222111
Q ss_pred CeeecC---CCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeec----CCCCeEEEEEecCCcEEEEEcCCcE
Q 018784 138 PREVGN---SSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLE----TKSPVTSAEVSRDGRYITTADGSSV 210 (350)
Q Consensus 138 ~~~~~~---~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~i 210 (350)
.....+ ....+..+.+.++ +.+++. +.+|.+. .-...|+...... .......+.+..+++.++++..|.|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~~-~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRTP-GEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred ccccCCccccccceeeEEEcCC-CCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 111111 1234667777654 445544 4556554 3444455443332 1235777778877888888888877
Q ss_pred EEEE
Q 018784 211 KFWD 214 (350)
Q Consensus 211 ~vwd 214 (350)
--|+
T Consensus 326 l~~~ 329 (334)
T PRK13684 326 LRYV 329 (334)
T ss_pred EEec
Confidence 6665
No 453
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=83.54 E-value=22 Score=35.27 Aligned_cols=101 Identities=19% Similarity=0.198 Sum_probs=63.4
Q ss_pred CCcEEEEEeCCCeEEEEECCC-------C-------------ceeEeecCCCCeEEEEEe--cCCcEEEEEcCC-cEEEE
Q 018784 157 DQTILSSCTDSGGVRLWDARS-------G-------------KIVQTLETKSPVTSAEVS--RDGRYITTADGS-SVKFW 213 (350)
Q Consensus 157 ~~~~~~s~~~dg~i~iwd~~~-------~-------------~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~~-~i~vw 213 (350)
+..+|+.|.+||.|.+|.+++ . ++...+.....+..+++. ...+++|+++++ .|.||
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 456788899999999996521 1 122333345678888988 777888887654 45555
Q ss_pred --ECCCcc--eeeeeecCCCCceeEecCCC----Cc-EEEEecCCCeEEEEEc
Q 018784 214 --DANHFG--LVKGYNMPCNTESASLEPKL----GN-IFIAGGEDMWVHVFDF 257 (350)
Q Consensus 214 --d~~~~~--~~~~~~~~~~~~~~~~~~~~----~~-~l~sg~~d~~i~v~d~ 257 (350)
.+...+ .........+...++|.+.. |. .+++++-.|.+-+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 442211 11122334456666665433 22 7788888999888887
No 454
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=83.47 E-value=17 Score=33.21 Aligned_cols=60 Identities=3% Similarity=-0.095 Sum_probs=34.1
Q ss_pred cCCeEEEEECCCCcEEEEeeCC-------------------CeEEEeeCCCCCeeeeee-ccccEeEEEEcCCCCeEEEe
Q 018784 61 KGAVWSCCLDANALFSASGSAD-------------------FTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTG 120 (350)
Q Consensus 61 ~~~V~~v~~~~~~~~l~s~s~D-------------------g~v~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg 120 (350)
......+.+.+||.+.++-+.. |.|.-++..+++. ..+. .-.....++|+|+|+++++-
T Consensus 123 ~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 123 HHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred cccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEc
Confidence 3446788999998876654421 3344444443332 2222 11234678888888877653
Q ss_pred e
Q 018784 121 G 121 (350)
Q Consensus 121 ~ 121 (350)
.
T Consensus 202 n 202 (367)
T TIGR02604 202 N 202 (367)
T ss_pred c
Confidence 3
No 455
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=83.42 E-value=36 Score=31.15 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=7.9
Q ss_pred CCCCeEEEeeCC
Q 018784 112 EDTHLLLTGGFE 123 (350)
Q Consensus 112 ~~~~~l~sg~~d 123 (350)
.++++.+.|+.+
T Consensus 138 ~~~~IYv~GG~~ 149 (376)
T PRK14131 138 HNGKAYITGGVN 149 (376)
T ss_pred eCCEEEEECCCC
Confidence 467777777754
No 456
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.23 E-value=12 Score=35.28 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=55.5
Q ss_pred ceeEEEecccCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee
Q 018784 18 PVVDLFYSPITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH 97 (350)
Q Consensus 18 ~v~~~~~~~~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~ 97 (350)
.|.-|..+ +.|..+|-++.+|.+.++=....-.-..++.-...|.|-.++-+.+++.+ +.
T Consensus 105 eV~~vl~s---~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~fts-s~---------------- 164 (741)
T KOG4460|consen 105 EVYQVLLS---PTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTS-ST---------------- 164 (741)
T ss_pred EEEEEEec---CCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeecc-CC----------------
Confidence 34444334 47888888888887766543333333345544444555445444333322 11
Q ss_pred eeeccccEeEEEEcCCC---CeEEEeeCCCeEEEEECCCCC
Q 018784 98 SFEHKHIVRACAFSEDT---HLLLTGGFEKILRIFDLNRPD 135 (350)
Q Consensus 98 ~~~h~~~V~~~~~~~~~---~~l~sg~~d~~v~vwd~~~~~ 135 (350)
.=.+..++|||+. ..|..-..|.++|+||+.+.+
T Consensus 165 ----~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 165 ----SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred ----ceeeeeccccCCccCCceEEEEecCcEEEEEecCCcc
Confidence 1135677888864 567777889999999987644
No 457
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.65 E-value=7.8 Score=37.56 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=42.3
Q ss_pred CCCCeEEEeeCCCeEEEEECCCC---CCCCee--ec--------------------CCCCcEEEEEEeC---CCCcEEEE
Q 018784 112 EDTHLLLTGGFEKILRIFDLNRP---DAPPRE--VG--------------------NSSGSIRTVAWLH---SDQTILSS 163 (350)
Q Consensus 112 ~~~~~l~sg~~d~~v~vwd~~~~---~~~~~~--~~--------------------~~~~~v~~~~~~~---~~~~~~~s 163 (350)
++...++.+..||.+........ ...... .. .........+... .+..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 46777888889999888876541 110000 00 0112233333332 25678888
Q ss_pred EeCCCeEEEEECCCCceeEee
Q 018784 164 CTDSGGVRLWDARSGKIVQTL 184 (350)
Q Consensus 164 ~~~dg~i~iwd~~~~~~~~~~ 184 (350)
-+.|+++|+||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 899999999999999986654
No 458
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=82.64 E-value=35 Score=30.41 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=42.4
Q ss_pred CCcEEEEEeC-----CCeEEEEECCCCc--eeEeecCCCCeEEEEEecCCcEEE-EEcCC----cEEEEECCCcceeeee
Q 018784 157 DQTILSSCTD-----SGGVRLWDARSGK--IVQTLETKSPVTSAEVSRDGRYIT-TADGS----SVKFWDANHFGLVKGY 224 (350)
Q Consensus 157 ~~~~~~s~~~-----dg~i~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~-~~~~~----~i~vwd~~~~~~~~~~ 224 (350)
++.+++.|+. ...+..||+.+.+ .+..+.........+...++++.+ ++.++ .+.+||+.+..-...-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~ 202 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVA 202 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECC
Confidence 4556555553 2368888887653 222121111122222334455544 33332 3567888765432211
Q ss_pred ec-----CCCC-ceeEecCCCCcEEEEecCC
Q 018784 225 NM-----PCNT-ESASLEPKLGNIFIAGGED 249 (350)
Q Consensus 225 ~~-----~~~~-~~~~~~~~~~~~l~sg~~d 249 (350)
.+ +... ....+....+.+++.|+.+
T Consensus 203 ~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 203 DPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 11 1000 1112222346889999876
No 459
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.38 E-value=55 Score=32.52 Aligned_cols=174 Identities=14% Similarity=0.199 Sum_probs=83.1
Q ss_pred CCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEe--e---cCCCCeEEEEEec
Q 018784 123 EKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT--L---ETKSPVTSAEVSR 197 (350)
Q Consensus 123 d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~--~---~~~~~v~~~~~~~ 197 (350)
-..|+||+... .. .....-.++.+..+.|+.....+++ ..+|+++++++-... +.. . ...+.|..+.+..
T Consensus 63 ~~~I~If~~sG-~l-L~~~~w~~~~lI~mgWs~~eeLI~v--~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 63 RPYIRIFNISG-QL-LGRILWKHGELIGMGWSDDEELICV--QKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFH 137 (829)
T ss_pred ceeEEEEeccc-cc-hHHHHhcCCCeeeecccCCceEEEE--eccceEEEeecchhh-hcccccccccccCceeEEEEec
Confidence 34588888753 22 2222223347889999865554433 588999999975322 111 1 1123466666666
Q ss_pred CCcEEEEEcCCcEEEEECCCcceeeeeecCCC---CceeEecCCC-C-cEEE-EecCCCeEEEEEcccCee-EEeecCCC
Q 018784 198 DGRYITTADGSSVKFWDANHFGLVKGYNMPCN---TESASLEPKL-G-NIFI-AGGEDMWVHVFDFHTGEQ-IGCNKGHH 270 (350)
Q Consensus 198 ~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~-~-~~l~-sg~~d~~i~v~d~~~~~~-~~~~~~h~ 270 (350)
+|-.+.+.++..+.+-+.......+-...|.+ ..+.....+. . ..++ ..-..+ .+++...++.. ...+.-..
T Consensus 138 ~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~ 216 (829)
T KOG2280|consen 138 NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPN 216 (829)
T ss_pred CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCC
Confidence 77666555554444444332211111111111 1122222211 1 1111 110000 11222222111 11111112
Q ss_pred cCEEEEEEcCCCCEEEEecCCCcEEEecCCCC
Q 018784 271 GPVHCVRFSPGGESYASGSEDGTIRIWQTNPP 302 (350)
Q Consensus 271 ~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~~ 302 (350)
+.+..+..||+.++||-=...|.|.+-..+..
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchh
Confidence 45777888898888888888888887766533
No 460
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.35 E-value=43 Score=31.25 Aligned_cols=117 Identities=12% Similarity=0.135 Sum_probs=72.7
Q ss_pred ccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeec-----cccEeEEEEcCCCCeEEEeeCCCeEEEEECCCC
Q 018784 60 HKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEH-----KHIVRACAFSEDTHLLLTGGFEKILRIFDLNRP 134 (350)
Q Consensus 60 H~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h-----~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~ 134 (350)
-.++|.++.|++|.+.+|.--.|.+|.+.+....+.+..+.| +..+....|+.+.. +|-.. +..+.+|.+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A~i~-~~G~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IAFIT-DQGIEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EEEEe-cCCeEEEEEchh
Confidence 457999999999999999999999999998743333333322 23467777776643 33322 344677766543
Q ss_pred CCCCeeecCCCCcEEEEEEeCCCCcEEEEEe-CCCeEEEEECCCC
Q 018784 135 DAPPREVGNSSGSIRTVAWLHSDQTILSSCT-DSGGVRLWDARSG 178 (350)
Q Consensus 135 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~-~dg~i~iwd~~~~ 178 (350)
....+....++..|.-..|.+.....+++.+ ..+++.=+-++++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 3334455666667777778776555544433 3344443444443
No 461
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=81.63 E-value=0.58 Score=46.34 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=43.0
Q ss_pred cEEEEecCCCeEEEEEcccCeeEEeecCCCcCEEEEE-----------EcCCCCEEEEecCCCcEEEecCC
Q 018784 241 NIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVHCVR-----------FSPGGESYASGSEDGTIRIWQTN 300 (350)
Q Consensus 241 ~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~~l~-----------~sp~~~~lasgs~Dg~v~vw~~~ 300 (350)
-++..+-.++.|++..+.+... ..+.+|..++..++ .||||+.+|..+.||.++.|...
T Consensus 196 ~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 196 VYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 4555666678888877654332 33456877766654 58999999999999999999864
No 462
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.54 E-value=22 Score=37.35 Aligned_cols=137 Identities=15% Similarity=0.226 Sum_probs=83.8
Q ss_pred EeCCCCeeEeeCCCCceeeeccCccCCeEEEEE-CCCC-------cEEEEeeCCCeEEEeeCCCCC---ee------eee
Q 018784 37 ASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCL-DANA-------LFSASGSADFTAKLWDALTGD---EK------HSF 99 (350)
Q Consensus 37 gs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~-~~~~-------~~l~s~s~Dg~v~vWd~~~~~---~~------~~~ 99 (350)
.+.|+.+.||+.+++.-...+.+-+..|..|.+ .|.. +++..-.+--.|.++-+.-.+ .. ..+
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 467899999999997777888888888877764 3322 232223344455555432111 01 111
Q ss_pred e-ccccEeEEEEcCCCCeEEEeeCCCeEEEEEC----CCC---C-C----------------CCeeecCCCCcEEEEEEe
Q 018784 100 E-HKHIVRACAFSEDTHLLLTGGFEKILRIFDL----NRP---D-A----------------PPREVGNSSGSIRTVAWL 154 (350)
Q Consensus 100 ~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~----~~~---~-~----------------~~~~~~~~~~~v~~~~~~ 154 (350)
. ..-.|.++....+|+.+.+|-.| .+|.+ ..+ . + .....+.+...|..+...
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID 251 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID 251 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence 1 24468999989999988876655 45543 110 0 0 001112445677777753
Q ss_pred CCCCcEEEEEeCCCeEEEEECCC
Q 018784 155 HSDQTILSSCTDSGGVRLWDARS 177 (350)
Q Consensus 155 ~~~~~~~~s~~~dg~i~iwd~~~ 177 (350)
+...++.+-++.++|.+||+..
T Consensus 252 -~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 252 -NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred -cccceeeeeccCceEEEEEccC
Confidence 4556777788889999999976
No 463
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=81.05 E-value=34 Score=29.21 Aligned_cols=138 Identities=12% Similarity=0.229 Sum_probs=71.2
Q ss_pred eEeeCCCCceeeeccCccCCeEEE--EECCCCcEEEEeeCC---CeEEEeeCCCCC--eee-----eeeccccEeEEEEc
Q 018784 44 MLRNGETGDWIGTFEGHKGAVWSC--CLDANALFSASGSAD---FTAKLWDALTGD--EKH-----SFEHKHIVRACAFS 111 (350)
Q Consensus 44 ~iw~~~~~~~~~~l~gH~~~V~~v--~~~~~~~~l~s~s~D---g~v~vWd~~~~~--~~~-----~~~h~~~V~~~~~~ 111 (350)
.+||+.+.+.. .+.-.+ .+.|. .+-++|+++.+||.- ..+|+++..... +.. .+.....-.+...-
T Consensus 49 ~~yD~~tn~~r-pl~v~t-d~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 49 VEYDPNTNTFR-PLTVQT-DTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEecCCCcEE-eccCCC-CCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 46888777653 232211 12222 355899999887652 458888865411 111 12222333344556
Q ss_pred CCCCeEEEeeCCC-eEEEEECCCCCCCCee---ec----CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEe
Q 018784 112 EDTHLLLTGGFEK-ILRIFDLNRPDAPPRE---VG----NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQT 183 (350)
Q Consensus 112 ~~~~~l~sg~~d~-~v~vwd~~~~~~~~~~---~~----~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~ 183 (350)
|||+.|+.||.+. +...|.-......... .. ......+-..|.-+++++++.+..+ -.|||..+.+.+..
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRT 204 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEee
Confidence 8999998888763 3455543211110100 00 1112233344555677777776653 45568777766555
Q ss_pred ec
Q 018784 184 LE 185 (350)
Q Consensus 184 ~~ 185 (350)
+.
T Consensus 205 lP 206 (243)
T PF07250_consen 205 LP 206 (243)
T ss_pred CC
Confidence 43
No 464
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=80.83 E-value=45 Score=30.52 Aligned_cols=225 Identities=15% Similarity=0.094 Sum_probs=96.9
Q ss_pred CccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEE--ECCCCcEEEEee---CC-------------------CeE
Q 018784 30 DGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCC--LDANALFSASGS---AD-------------------FTA 85 (350)
Q Consensus 30 dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~--~~~~~~~l~s~s---~D-------------------g~v 85 (350)
+++.+.--.....++--|+.+.+....++-...-+-... .+.++..++..- .| ..|
T Consensus 91 ~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i 170 (386)
T PF14583_consen 91 DDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRI 170 (386)
T ss_dssp TSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEE
T ss_pred CCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceE
Confidence 444544344445666667777765444444444332222 244566554321 11 122
Q ss_pred EEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEe----eCCCe-EEEEECCCCCCCCeeec-CCCCcEEEE-EEeCCCC
Q 018784 86 KLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG----GFEKI-LRIFDLNRPDAPPREVG-NSSGSIRTV-AWLHSDQ 158 (350)
Q Consensus 86 ~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg----~~d~~-v~vwd~~~~~~~~~~~~-~~~~~v~~~-~~~~~~~ 158 (350)
.--|+.+++....+.-+..+..+.|+|....+++= -.+.. -|||-+.........+. .....+..= -|.+++.
T Consensus 171 ~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 171 FTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGS 250 (386)
T ss_dssp EEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS
T ss_pred EEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCC
Confidence 23345555555555556667888999977666654 34443 47775543222122111 112222222 3445555
Q ss_pred cEEEEE----eCCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc-CC----------------cEEEEECCC
Q 018784 159 TILSSC----TDSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD-GS----------------SVKFWDANH 217 (350)
Q Consensus 159 ~~~~s~----~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~~----------------~i~vwd~~~ 217 (350)
.+..-+ +.+..|.-.|+.+++.......+ .......++||+++++.. |. -|.++++..
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~ 329 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEA 329 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEEEEETTT
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecccc
Confidence 544422 23345777788887654433333 455666779999987632 11 355677765
Q ss_pred cceeeeeec-------C----CCCceeEecCCCCcEEEEecCCCeEEEE
Q 018784 218 FGLVKGYNM-------P----CNTESASLEPKLGNIFIAGGEDMWVHVF 255 (350)
Q Consensus 218 ~~~~~~~~~-------~----~~~~~~~~~~~~~~~l~sg~~d~~i~v~ 255 (350)
......... . ..-.-..|.|+...+|..+..+|...||
T Consensus 330 ~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 330 GRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp TEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 443211110 0 0112345666544455555566665555
No 465
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.63 E-value=50 Score=30.86 Aligned_cols=100 Identities=14% Similarity=0.214 Sum_probs=61.9
Q ss_pred ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCC---eeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCC
Q 018784 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPP---REVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177 (350)
Q Consensus 101 h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~ 177 (350)
.++.+.++.|++|.+.||+--.|.+|..++....+... ...+.....|....|.+....-+++ +..+.+|.+..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~---~~G~e~y~v~p 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFIT---DQGIEFYQVLP 141 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEe---cCCeEEEEEch
Confidence 56789999999999999999999999999873222211 1223334457788888764433332 23466665543
Q ss_pred Cc-eeEeec-CCCCeEEEEEecCCcEEE
Q 018784 178 GK-IVQTLE-TKSPVTSAEVSRDGRYIT 203 (350)
Q Consensus 178 ~~-~~~~~~-~~~~v~~~~~~~~~~~l~ 203 (350)
.+ .++..+ ....|+--.++++.+.+.
T Consensus 142 ekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 142 EKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred hhhhhhhhhhcccCccEEEEccccceEe
Confidence 32 222222 234577777888876543
No 466
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=80.23 E-value=55 Score=31.15 Aligned_cols=154 Identities=20% Similarity=0.190 Sum_probs=73.5
Q ss_pred CccEEEEE---eCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccccE-
Q 018784 30 DGFFLVSA---SKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKHIV- 105 (350)
Q Consensus 30 dg~~lasg---s~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V- 105 (350)
+|-+++++ .......+.|. .|.....+..-......+..-++|.+++..+ ..++..|.. |+....+...+..
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~ 189 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYY 189 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred CcEEEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCccc
Confidence 45566666 22333455553 4444443322111111144568888887655 788888874 4444444333221
Q ss_pred ---eEEEEcCCCCeEEEee--------------CC---------CeEEEEECCCCCCCCee-------------ecCCC-
Q 018784 106 ---RACAFSEDTHLLLTGG--------------FE---------KILRIFDLNRPDAPPRE-------------VGNSS- 145 (350)
Q Consensus 106 ---~~~~~~~~~~~l~sg~--------------~d---------~~v~vwd~~~~~~~~~~-------------~~~~~- 145 (350)
..+..-|+|++|+.+. .| ..+..||+.+--.+... .....
T Consensus 190 ~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~D 269 (477)
T PF05935_consen 190 DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRD 269 (477)
T ss_dssp -B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSB
T ss_pred ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCC
Confidence 3455678888877666 12 23456665321101110 00001
Q ss_pred -CcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCC
Q 018784 146 -GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETK 187 (350)
Q Consensus 146 -~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~ 187 (350)
-++.++.+.+.++.+++|.=.-..|...|.++++....+..+
T Consensus 270 W~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 270 WLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp S--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred ccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 247888888878888888765568999998899887777643
No 467
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=80.08 E-value=45 Score=30.01 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=8.6
Q ss_pred CeEEEEECCCCc
Q 018784 168 GGVRLWDARSGK 179 (350)
Q Consensus 168 g~i~iwd~~~~~ 179 (350)
..+.+||+.+.+
T Consensus 168 ~~v~~YDp~t~~ 179 (346)
T TIGR03547 168 KNVLSYDPSTNQ 179 (346)
T ss_pred ceEEEEECCCCc
Confidence 468888987653
No 468
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=79.97 E-value=8.8 Score=21.79 Aligned_cols=30 Identities=20% Similarity=0.414 Sum_probs=18.8
Q ss_pred CCCcCEEEEEEcCCCCEEE-EecCC--CcEEEe
Q 018784 268 GHHGPVHCVRFSPGGESYA-SGSED--GTIRIW 297 (350)
Q Consensus 268 ~h~~~v~~l~~sp~~~~la-sgs~D--g~v~vw 297 (350)
.....-....|||||+.|+ +...+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445668889999998876 44444 555555
No 469
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=79.48 E-value=44 Score=29.58 Aligned_cols=234 Identities=14% Similarity=0.028 Sum_probs=107.8
Q ss_pred cccCCCccEEEEEeCCCCeeEeeCCC--CceeeeccCccCCeEEEEECCCCcEEEE-eeCCCeEEEeeCCCCCe------
Q 018784 25 SPITPDGFFLVSASKDSSPMLRNGET--GDWIGTFEGHKGAVWSCCLDANALFSAS-GSADFTAKLWDALTGDE------ 95 (350)
Q Consensus 25 ~~~s~dg~~lasgs~d~~v~iw~~~~--~~~~~~l~gH~~~V~~v~~~~~~~~l~s-~s~Dg~v~vWd~~~~~~------ 95 (350)
+|++-+++.|+-|+.+|-..+. ... .++.+.+ +...|..+.+.+.-..|++ ++....++++++..-..
T Consensus 7 ~~~~~~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~ 83 (302)
T smart00036 7 HPITCDGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALG 83 (302)
T ss_pred cccccCCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccC
Confidence 4555566688989998875554 433 3444433 4568888887766554443 44445599998732221
Q ss_pred ----------eeeeeccccEeEEEEcC-CCCeEEEeeCCCeEEEEECCCCCCCCeeec-------CCCCcEEEEEEeCC-
Q 018784 96 ----------KHSFEHKHIVRACAFSE-DTHLLLTGGFEKILRIFDLNRPDAPPREVG-------NSSGSIRTVAWLHS- 156 (350)
Q Consensus 96 ----------~~~~~h~~~V~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~- 156 (350)
...+.+......+.... ....+++++...+|.++...++........ .....+..+..+..
T Consensus 84 ~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~ 163 (302)
T smart00036 84 SARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSF 163 (302)
T ss_pred CccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccc
Confidence 12334444332222222 122344555667777775543321111111 11122222222221
Q ss_pred -CCcEEEEEeCCCeEEEEECCC--Cce----eEe-ecCCC-CeEEEEEecCCcEEEEEcCCcEEEEECCCcce--eeeee
Q 018784 157 -DQTILSSCTDSGGVRLWDARS--GKI----VQT-LETKS-PVTSAEVSRDGRYITTADGSSVKFWDANHFGL--VKGYN 225 (350)
Q Consensus 157 -~~~~~~s~~~dg~i~iwd~~~--~~~----~~~-~~~~~-~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~--~~~~~ 225 (350)
...+.+.+.. +...+.++.. ... +.. ..... ....+..-+++.+|.+-++. ..+.|...... ...+.
T Consensus 164 ~~~~lcvG~~~-~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~~~~-~v~Vn~~G~~~~r~~~l~ 241 (302)
T smart00036 164 ERPGICIGSDK-GGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCYDEF-GVFVNLYGKRRSRNPILH 241 (302)
T ss_pred cceEEEEEEcC-CCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEECcE-EEEEeCCCCccccceEEE
Confidence 2234444332 2333444322 110 000 00111 22233334556676665543 33344332111 11233
Q ss_pred cCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeec
Q 018784 226 MPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNK 267 (350)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~ 267 (350)
....+....+. ..++++- .++.|.++++.+++.+.++.
T Consensus 242 w~~~p~~~~~~---~pyll~~-~~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 242 WEFMPESFAYH---SPYLLAF-HDNGIEIRSIKTGELLQELA 279 (302)
T ss_pred cCCcccEEEEE---CCEEEEE-cCCcEEEEECCCCceEEEEe
Confidence 33333344433 2344433 35669999999988776654
No 470
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.99 E-value=44 Score=29.28 Aligned_cols=119 Identities=9% Similarity=0.137 Sum_probs=77.9
Q ss_pred ccCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeecc--ccEeEEEEcCCCCeEEEeeCCCeEEEEECCCC
Q 018784 57 FEGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHK--HIVRACAFSEDTHLLLTGGFEKILRIFDLNRP 134 (350)
Q Consensus 57 l~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~--~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~ 134 (350)
+.|-...|.++.|+|+.+.|++......-.||=..+|+.+.++.-. .....+.+..++++.++--.++.+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 3444455899999999999888888888888877778877766422 23456777778888887778888888877543
Q ss_pred CCC---------CeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECC
Q 018784 135 DAP---------PREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDAR 176 (350)
Q Consensus 135 ~~~---------~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~ 176 (350)
... .............++|.+.++.++++= +-.-+.|+.+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK-Er~P~~I~~~~ 210 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK-ERNPIGIFEVT 210 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE-ccCCcEEEEEe
Confidence 211 111111133456788888777776654 33455555544
No 471
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=78.77 E-value=37 Score=28.26 Aligned_cols=134 Identities=16% Similarity=0.170 Sum_probs=76.2
Q ss_pred cEEEEEeCCCeEEEEECCC--CceeEeecCCCCeEEEEEecCCcEEEEEc----CC---cEEEE---ECC--Ccceee--
Q 018784 159 TILSSCTDSGGVRLWDARS--GKIVQTLETKSPVTSAEVSRDGRYITTAD----GS---SVKFW---DAN--HFGLVK-- 222 (350)
Q Consensus 159 ~~~~s~~~dg~i~iwd~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~~---~i~vw---d~~--~~~~~~-- 222 (350)
.+++++ ...+|.+|++.+ .+.+..+..-+.+..+..+..|.++++-. .. .+|+| ... ...+++
T Consensus 30 ~Lfva~-~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 30 ALFVAA-SGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred eEEEEc-CCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 344433 336899999883 45677787888999999999999998853 22 56664 221 011111
Q ss_pred --e-------------------eecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCee-EE---------eecCCCc
Q 018784 223 --G-------------------YNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQ-IG---------CNKGHHG 271 (350)
Q Consensus 223 --~-------------------~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~-~~---------~~~~h~~ 271 (350)
+ +.....+..++..+..|++++.. ++++.+|.+..... .. .+..|..
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~ 186 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHID 186 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecccccEEechhhhhheec
Confidence 1 11122344555666667776654 57788998765433 11 1111221
Q ss_pred --CEEEEEEcCCCCEEEEecCCCcEEEec
Q 018784 272 --PVHCVRFSPGGESYASGSEDGTIRIWQ 298 (350)
Q Consensus 272 --~v~~l~~sp~~~~lasgs~Dg~v~vw~ 298 (350)
.+..++|. +.|+|.-+.. .+++..
T Consensus 187 ~~~p~~v~ic--~~yiA~~s~~-ev~Vlk 212 (215)
T PF14761_consen 187 NFKPTQVAIC--EGYIAVMSDL-EVLVLK 212 (215)
T ss_pred CceEEEEEEE--eeEEEEecCC-EEEEEE
Confidence 24556664 4577765543 455554
No 472
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=77.49 E-value=30 Score=26.45 Aligned_cols=97 Identities=15% Similarity=0.235 Sum_probs=57.6
Q ss_pred EEEEEeCCCeEEEEECCC--------CceeEeecCCCCeEEEEEec-----CCcEEEEEcCCcEEEEECCCcceeeeeec
Q 018784 160 ILSSCTDSGGVRLWDARS--------GKIVQTLETKSPVTSAEVSR-----DGRYITTADGSSVKFWDANHFGLVKGYNM 226 (350)
Q Consensus 160 ~~~s~~~dg~i~iwd~~~--------~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~~~i~vwd~~~~~~~~~~~~ 226 (350)
.|+.++.-|+|.|.+... ...+..+.....|++++--+ +...|..++...+..||......+....+
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke~ 91 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKEV 91 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhhC
Confidence 455556668899998763 33556677777788876543 23567778888999999987665544444
Q ss_pred CCCCceeEe---cCCCCcEEEEecCCCeEEEEEc
Q 018784 227 PCNTESASL---EPKLGNIFIAGGEDMWVHVFDF 257 (350)
Q Consensus 227 ~~~~~~~~~---~~~~~~~l~sg~~d~~i~v~d~ 257 (350)
+.....+.+ ......++++|+ +-.|.-||.
T Consensus 92 ~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~ 124 (136)
T PF14781_consen 92 PDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDY 124 (136)
T ss_pred ccceeEEEEEecCCCCCcEEEECc-eEEEEEeCC
Confidence 433322222 122234555554 344555554
No 473
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=77.07 E-value=80 Score=31.23 Aligned_cols=158 Identities=8% Similarity=0.069 Sum_probs=83.0
Q ss_pred cCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeee--ee--eccc-cEeE-----EEEcCCCCeEEEeeC----CCeE
Q 018784 61 KGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKH--SF--EHKH-IVRA-----CAFSEDTHLLLTGGF----EKIL 126 (350)
Q Consensus 61 ~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~--~~--~h~~-~V~~-----~~~~~~~~~l~sg~~----d~~v 126 (350)
.+.|..+.+..++..++..-..|.|++||...+.... .+ .+.. .+++ ........++++.+. .-..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 4667788888899999999999999999983222111 11 1222 1222 111122344444433 2347
Q ss_pred EEEECCCCCCCCeeec---CCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEeecCCC-------CeEEEEEe
Q 018784 127 RIFDLNRPDAPPREVG---NSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTLETKS-------PVTSAEVS 196 (350)
Q Consensus 127 ~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~v~~~~~~ 196 (350)
|++.+........... .+........|....+.+.-= .+++|.+|.+.+.+...++.-.. .+.++. .
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~-~ 285 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK-P 285 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee-c
Confidence 7777722222222211 111112223333334544322 56799999998887776665431 222322 2
Q ss_pred cCCcEEEEEcCCcEEEEECCCccee
Q 018784 197 RDGRYITTADGSSVKFWDANHFGLV 221 (350)
Q Consensus 197 ~~~~~l~~~~~~~i~vwd~~~~~~~ 221 (350)
|....+..+.+..|.+.|+.-...+
T Consensus 286 ~s~nRvLLs~~nkIyLld~~~~siL 310 (670)
T PF10395_consen 286 PSPNRVLLSVNNKIYLLDLKFESIL 310 (670)
T ss_pred CCCCeEEEEcCCEEEEEeehhhhhh
Confidence 3334444556678999997654433
No 474
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=75.69 E-value=12 Score=26.34 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=32.1
Q ss_pred eeCCCeEEEeeCCCCCeeeeeeccccEeEEEEcCCCCeEEEe--eCCCeEEEE
Q 018784 79 GSADFTAKLWDALTGDEKHSFEHKHIVRACAFSEDTHLLLTG--GFEKILRIF 129 (350)
Q Consensus 79 ~s~Dg~v~vWd~~~~~~~~~~~h~~~V~~~~~~~~~~~l~sg--~~d~~v~vw 129 (350)
+..+|.+..||..+++....+..=...+.+++++++.+++.+ ..-+..|.|
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 344667777888887655555544567899999999977765 334445555
No 475
>PLN02193 nitrile-specifier protein
Probab=75.67 E-value=75 Score=30.19 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=27.9
Q ss_pred CCcEEEEecCC----CeEEEEEcccCe--eEEeec--CCCcCEEEEEEcCCCCEEEEecCC
Q 018784 239 LGNIFIAGGED----MWVHVFDFHTGE--QIGCNK--GHHGPVHCVRFSPGGESYASGSED 291 (350)
Q Consensus 239 ~~~~l~sg~~d----~~i~v~d~~~~~--~~~~~~--~h~~~v~~l~~sp~~~~lasgs~D 291 (350)
.+++++.|+.+ ..+.+||+.+.+ .+.... .......+++. -++++++.|+.+
T Consensus 328 ~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~~~~iyv~GG~~ 387 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-VGKHIVIFGGEI 387 (470)
T ss_pred CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-ECCEEEEECCcc
Confidence 36777777755 458899987653 222211 01111222222 256778888853
No 476
>PLN02153 epithiospecifier protein
Probab=75.55 E-value=61 Score=29.12 Aligned_cols=23 Identities=4% Similarity=0.021 Sum_probs=14.0
Q ss_pred CCcEEEEEeCC-----CeEEEEECCCCc
Q 018784 157 DQTILSSCTDS-----GGVRLWDARSGK 179 (350)
Q Consensus 157 ~~~~~~s~~~d-----g~i~iwd~~~~~ 179 (350)
++.+++-|+.+ ..+.++|+++.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 45566555543 257788987653
No 477
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=74.21 E-value=66 Score=28.89 Aligned_cols=104 Identities=17% Similarity=0.205 Sum_probs=54.1
Q ss_pred eEEEEEecCCcEEEEEcCCcEEEEECCCcc--eeeeee-c----CCCCceeEecCC---CCcEEEEecCC--------Ce
Q 018784 190 VTSAEVSRDGRYITTADGSSVKFWDANHFG--LVKGYN-M----PCNTESASLEPK---LGNIFIAGGED--------MW 251 (350)
Q Consensus 190 v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~--~~~~~~-~----~~~~~~~~~~~~---~~~~l~sg~~d--------~~ 251 (350)
..+++|.|+|+++++-..+.|++++..... .+.... . ......+.+.+. ++.++++.+.. ..
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~ 83 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNR 83 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCccee
Confidence 467999999999998888999999933222 122221 1 011223455552 34555555422 24
Q ss_pred EEEEEcccC-------eeE-EeecC---CCcCEEEEEEcCCCCEEEEecCCCc
Q 018784 252 VHVFDFHTG-------EQI-GCNKG---HHGPVHCVRFSPGGESYASGSEDGT 293 (350)
Q Consensus 252 i~v~d~~~~-------~~~-~~~~~---h~~~v~~l~~sp~~~~lasgs~Dg~ 293 (350)
|.-|.+..+ +.+ ..+.. ....-..|.|.|||.++++.+..+.
T Consensus 84 v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 84 VVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred eEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 444555433 111 11111 2223567999999988777665443
No 478
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=73.87 E-value=21 Score=35.38 Aligned_cols=106 Identities=10% Similarity=0.150 Sum_probs=59.5
Q ss_pred ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCC--CCeeecCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCC
Q 018784 101 HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDA--PPREVGNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSG 178 (350)
Q Consensus 101 h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~ 178 (350)
....+.++.-+|.++-++.+..||.|++|+...... ...... +...+.|.. .+ ++++..|+.+.-|. +.|
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~----p~~nlv~tn-hg--l~~~tsdrr~la~~-~dg 84 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAK----PKENLVFTN-HG--LVTATSDRRALAWK-EDG 84 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcC----Cccceeeec-cc--eEEEeccchhheee-ccC
Confidence 345678888899999999999999999999754322 111111 112223321 22 44556677777775 445
Q ss_pred ceeEeecC----CCCeEEEEEecCCcEEEEEcCCcEEEEE
Q 018784 179 KIVQTLET----KSPVTSAEVSRDGRYITTADGSSVKFWD 214 (350)
Q Consensus 179 ~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~~~i~vwd 214 (350)
...+++.. .....++.+.|..+-+++.--|.|.-+|
T Consensus 85 vvqqqfdyndqsekefss~~cdptaqnvvgtlcggv~q~d 124 (1636)
T KOG3616|consen 85 VVQQQFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFD 124 (1636)
T ss_pred cchhhccccchhhhhccceecCchhhhhhhhhccceeeeh
Confidence 44344432 2235556666655444433333444444
No 479
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=72.43 E-value=19 Score=35.97 Aligned_cols=143 Identities=15% Similarity=0.189 Sum_probs=84.6
Q ss_pred EEEEeeCCCeEEEeeCCCCCeeeeee-----ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCC----CCCeeecCCC
Q 018784 75 FSASGSADFTAKLWDALTGDEKHSFE-----HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPD----APPREVGNSS 145 (350)
Q Consensus 75 ~l~s~s~Dg~v~vWd~~~~~~~~~~~-----h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~----~~~~~~~~~~ 145 (350)
....|+.++.+-++............ ....+.++.+++.. +..|.-||++-++--.... .+........
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~S--lgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~ 626 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSGS--LGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGS 626 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccccc--cccCccCCccccccCCCCCCCCCCCccccccCC
Confidence 45667888888888765332222221 23456676666543 4556666666554221000 0111222234
Q ss_pred CcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeEee----cCCCCeEEEEEecCCcEEEEEcCCcEEEEECCCccee
Q 018784 146 GSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQTL----ETKSPVTSAEVSRDGRYITTADGSSVKFWDANHFGLV 221 (350)
Q Consensus 146 ~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~~~i~vwd~~~~~~~ 221 (350)
.++.+.++.. . ++-++.+|.|.++...+......+ .+...|+.+....++-+++-+++..+++++..+....
T Consensus 627 lPvrsla~~e--d--~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl~hl 702 (925)
T KOG3522|consen 627 LPVRSLAFQE--D--FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETLWHL 702 (925)
T ss_pred ccccchhhhh--c--eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEecccccCCc
Confidence 4566665532 1 344567799999988765444433 3456789999999999998888889999887765544
Q ss_pred ee
Q 018784 222 KG 223 (350)
Q Consensus 222 ~~ 223 (350)
+.
T Consensus 703 qd 704 (925)
T KOG3522|consen 703 QD 704 (925)
T ss_pred cc
Confidence 43
No 480
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=71.98 E-value=1.5e+02 Score=31.92 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=33.4
Q ss_pred EEEEEcCCCCEEEEecC------------CCcEEEecCCCCCcccCCCCCCCccccccccccccceeeeeeEEEcccch
Q 018784 274 HCVRFSPGGESYASGSE------------DGTIRIWQTNPPNHEENHSGTGNAQTGKLKASTDEVTRKIEGFHINKEGK 340 (350)
Q Consensus 274 ~~l~~sp~~~~lasgs~------------Dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~ 340 (350)
.+++++++|.++++-+. ||+|.+.-=........-.+.++.-.+.-...++.....+..+.++|||-
T Consensus 596 r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~ 674 (1899)
T KOG4659|consen 596 RDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGD 674 (1899)
T ss_pred hceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCc
Confidence 56889998877766543 44444442211111111112222233333333444445567778888873
No 481
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=71.07 E-value=11 Score=26.45 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=29.2
Q ss_pred CCCeEEEEECCCCceeEeecCCCCeEEEEEecCCcEEEEEc
Q 018784 166 DSGGVRLWDARSGKIVQTLETKSPVTSAEVSRDGRYITTAD 206 (350)
Q Consensus 166 ~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 206 (350)
.+|.+.-||+.+++....+..-.-.+.+++++|+.++..+.
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 45788889999987655555545668899999999877665
No 482
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=69.41 E-value=1.2e+02 Score=29.99 Aligned_cols=160 Identities=13% Similarity=0.205 Sum_probs=88.2
Q ss_pred eccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCC--CeeecCCCC-cEEEEEEeC-----C-CCcEEEEEe--CC-
Q 018784 100 EHKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAP--PREVGNSSG-SIRTVAWLH-----S-DQTILSSCT--DS- 167 (350)
Q Consensus 100 ~h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~--~~~~~~~~~-~v~~~~~~~-----~-~~~~~~s~~--~d- 167 (350)
.-...|..+.|.++++.+++.-.+|.|.+||....... ......+.. .+.+ .|.+ . +..+++.+. .+
T Consensus 127 kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k 205 (670)
T PF10395_consen 127 KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSK 205 (670)
T ss_pred EcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCc
Confidence 34667899999999999999999999999998322111 111111111 1222 2221 1 223333333 22
Q ss_pred CeEEEEECC-CCceeEeec----CCCCeEEEEEe-cCCcEEEEEcCCcEEEEECCCcceeeeeecCCCC-----ceeEec
Q 018784 168 GGVRLWDAR-SGKIVQTLE----TKSPVTSAEVS-RDGRYITTADGSSVKFWDANHFGLVKGYNMPCNT-----ESASLE 236 (350)
Q Consensus 168 g~i~iwd~~-~~~~~~~~~----~~~~v~~~~~~-~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~-----~~~~~~ 236 (350)
-..+++.+. ....+..+. .........|+ .+|++..- .++.|.+|++.+.+..++...+... ...++.
T Consensus 206 ~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 206 LSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 246777771 122222222 12223333343 34554433 6779999999999888888776322 233444
Q ss_pred CCC-CcEEEEecCCCeEEEEEcccCeeE
Q 018784 237 PKL-GNIFIAGGEDMWVHVFDFHTGEQI 263 (350)
Q Consensus 237 ~~~-~~~l~sg~~d~~i~v~d~~~~~~~ 263 (350)
+.. .++|++ .+++|++.|+.-...+
T Consensus 285 ~~s~nRvLLs--~~nkIyLld~~~~siL 310 (670)
T PF10395_consen 285 PPSPNRVLLS--VNNKIYLLDLKFESIL 310 (670)
T ss_pred cCCCCeEEEE--cCCEEEEEeehhhhhh
Confidence 443 455554 3678999998644443
No 483
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=68.96 E-value=67 Score=26.76 Aligned_cols=172 Identities=16% Similarity=0.138 Sum_probs=88.3
Q ss_pred CccEEEEEeCCC--CeeEeeCCCCceeeeccCccCCeEEEEECCC-CcEEEEeeCCCeEEEeeCCCCCeeeeeeccccEe
Q 018784 30 DGFFLVSASKDS--SPMLRNGETGDWIGTFEGHKGAVWSCCLDAN-ALFSASGSADFTAKLWDALTGDEKHSFEHKHIVR 106 (350)
Q Consensus 30 dg~~lasgs~d~--~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~-~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~~V~ 106 (350)
+|+++.+.+.-| .|+.||+.+|+.+.+-.=-...+..=-+..- ..+-+-.-.||...++|..+.++...+.-.+.-+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 578888877544 4788999988876543211112211111111 1122233567777888887777666554444444
Q ss_pred EEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeee----cCCCCcEEEEEEeCCCCcEEEEEeCCCeEEEEECCCCceeE
Q 018784 107 ACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREV----GNSSGSIRTVAWLHSDQTILSSCTDSGGVRLWDARSGKIVQ 182 (350)
Q Consensus 107 ~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~~~~~~ 182 (350)
.+ ..+++.|.++....++..-|.++........ +..-.....+.|. ++.+++---.+..|...|..+|+.+.
T Consensus 135 gL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 135 GL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred ee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 44 3456667776666666665654332211111 1111122333443 34444433344456667788888776
Q ss_pred eecCC-------------CCeEEEEEecCC-cEEEEE
Q 018784 183 TLETK-------------SPVTSAEVSRDG-RYITTA 205 (350)
Q Consensus 183 ~~~~~-------------~~v~~~~~~~~~-~~l~~~ 205 (350)
.+... .-.+.+++.|+. +++.++
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 65421 134556666654 455544
No 484
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=68.58 E-value=77 Score=29.52 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=21.3
Q ss_pred cEEEEEEeCCCCcEEEEEeCCCeEEEEECCC
Q 018784 147 SIRTVAWLHSDQTILSSCTDSGGVRLWDARS 177 (350)
Q Consensus 147 ~v~~~~~~~~~~~~~~s~~~dg~i~iwd~~~ 177 (350)
.+.++...+. ..++++...++.|.+|++..
T Consensus 191 ~I~~v~~d~~-r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPS-RRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETT-TTEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCC-cCEEEEEeCCCcEEEEEEeC
Confidence 3777776544 46788888999999999974
No 485
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=66.92 E-value=11 Score=20.34 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=19.9
Q ss_pred EEEEEeCCCCeeEeeCCCCceeeec
Q 018784 33 FLVSASKDSSPMLRNGETGDWIGTF 57 (350)
Q Consensus 33 ~lasgs~d~~v~iw~~~~~~~~~~l 57 (350)
.+..++.++.+...|.++|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5677888999999999888876543
No 486
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=65.11 E-value=96 Score=27.17 Aligned_cols=94 Identities=12% Similarity=0.138 Sum_probs=52.8
Q ss_pred CeEEEeeCCCCCeeeee-eccccEeEEEEcCCCCeEEEee------CCCeEEEEECCCCCCCCeee---cCCCCcEEEEE
Q 018784 83 FTAKLWDALTGDEKHSF-EHKHIVRACAFSEDTHLLLTGG------FEKILRIFDLNRPDAPPREV---GNSSGSIRTVA 152 (350)
Q Consensus 83 g~v~vWd~~~~~~~~~~-~h~~~V~~~~~~~~~~~l~sg~------~d~~v~vwd~~~~~~~~~~~---~~~~~~v~~~~ 152 (350)
..|.+||..+.+-...- .-.+.|.++.|..+.+++++|. ....+..||+.+........ ..-.+.+..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 35788887554321111 2456799999997777777764 45678899987654311111 11246677777
Q ss_pred EeCCCC-cEEEEEe-CC--CeEEEEECC
Q 018784 153 WLHSDQ-TILSSCT-DS--GGVRLWDAR 176 (350)
Q Consensus 153 ~~~~~~-~~~~s~~-~d--g~i~iwd~~ 176 (350)
+...+. .+.++|. .+ ..|..||=.
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs 123 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDGS 123 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcCC
Confidence 654443 3443332 22 346667633
No 487
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=63.95 E-value=24 Score=20.00 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEeCCCeEEEEECCCCceeEeecCC
Q 018784 163 SCTDSGGVRLWDARSGKIVQTLETK 187 (350)
Q Consensus 163 s~~~dg~i~iwd~~~~~~~~~~~~~ 187 (350)
.+..||.|.-.|.++|+.+...+..
T Consensus 5 ~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 5 VGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EETTTSEEEEEETTTTSEEEEEESS
T ss_pred EeCCCCEEEEEECCCCCEEEeeeCC
Confidence 4478899999999999988877654
No 488
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=63.79 E-value=34 Score=30.29 Aligned_cols=62 Identities=24% Similarity=0.294 Sum_probs=46.6
Q ss_pred CCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCe-----EEEEECCCCcEEEEeeCCCeEEEeeC
Q 018784 29 PDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAV-----WSCCLDANALFSASGSADFTAKLWDA 90 (350)
Q Consensus 29 ~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V-----~~v~~~~~~~~l~s~s~Dg~v~vWd~ 90 (350)
++|.+|+|.-.-.+|.+.+..+|+.+..|.|-.+.= ...++-.+.+++-.+..+++|.|+|-
T Consensus 153 ~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 153 DDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred CCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 488999999988899999999999999998762211 11344456667666678889999985
No 489
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=63.29 E-value=1.1e+02 Score=29.35 Aligned_cols=95 Identities=16% Similarity=0.121 Sum_probs=48.5
Q ss_pred eEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeee-ccccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeec
Q 018784 64 VWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFE-HKHIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVG 142 (350)
Q Consensus 64 V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-h~~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~ 142 (350)
|..+..++.|..++-.|.||.+.+.=...--.-..+. .+..|.|-.+.-+.+ +++.+.
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~-~ftss~-------------------- 164 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER-FFTSST-------------------- 164 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce-eeccCC--------------------
Confidence 3455677888888888888887664322111111222 233344444433332 222221
Q ss_pred CCCCcEEEEEEeCCC--CcEEEEEeCCCeEEEEECCCCcee
Q 018784 143 NSSGSIRTVAWLHSD--QTILSSCTDSGGVRLWDARSGKIV 181 (350)
Q Consensus 143 ~~~~~v~~~~~~~~~--~~~~~s~~~dg~i~iwd~~~~~~~ 181 (350)
.-.+..++|.|.. ...+..-..|++||+||+..-+.+
T Consensus 165 --~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 165 --SLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred --ceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 1123344555432 233344457789999998765443
No 490
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=63.24 E-value=66 Score=24.61 Aligned_cols=110 Identities=10% Similarity=0.086 Sum_probs=60.5
Q ss_pred EECCCCcEEEEeeCCCeEEEeeCCCC--------CeeeeeeccccEeEEEEcC-----CCCeEEEeeCCCeEEEEECCCC
Q 018784 68 CLDANALFSASGSADFTAKLWDALTG--------DEKHSFEHKHIVRACAFSE-----DTHLLLTGGFEKILRIFDLNRP 134 (350)
Q Consensus 68 ~~~~~~~~l~s~s~Dg~v~vWd~~~~--------~~~~~~~h~~~V~~~~~~~-----~~~~l~sg~~d~~v~vwd~~~~ 134 (350)
.|.....-|+.+..-|.|.|.+.... ..+..++-+..|++++-.+ ....|+.|+ ...+..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 34444445666667788888876532 2445666777788875433 234555555 557899999764
Q ss_pred CCCCeeecCCCCcEEEEEEe---CCCCcEEEEEeCCCeEEEEECCCCcee
Q 018784 135 DAPPREVGNSSGSIRTVAWL---HSDQTILSSCTDSGGVRLWDARSGKIV 181 (350)
Q Consensus 135 ~~~~~~~~~~~~~v~~~~~~---~~~~~~~~s~~~dg~i~iwd~~~~~~~ 181 (350)
...... .-...+.++.+- .....+++.|+. -.|.=+|..-.+..
T Consensus 84 ~d~Fyk--e~~DGvn~i~~g~~~~~~~~l~ivGGn-csi~Gfd~~G~e~f 130 (136)
T PF14781_consen 84 SDLFYK--EVPDGVNAIVIGKLGDIPSPLVIVGGN-CSIQGFDYEGNEIF 130 (136)
T ss_pred chhhhh--hCccceeEEEEEecCCCCCcEEEECce-EEEEEeCCCCcEEE
Confidence 433221 222345555442 223445555543 45665665433433
No 491
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=62.93 E-value=1.2e+02 Score=27.57 Aligned_cols=193 Identities=18% Similarity=0.096 Sum_probs=92.3
Q ss_pred CccEEEEEeCCCCeeEeeCCCCceeeec--cCccCCeEEEEECCCCcEEEEeeCCCeEEEeeCCCCCeeeeeeccc--cE
Q 018784 30 DGFFLVSASKDSSPMLRNGETGDWIGTF--EGHKGAVWSCCLDANALFSASGSADFTAKLWDALTGDEKHSFEHKH--IV 105 (350)
Q Consensus 30 dg~~lasgs~d~~v~iw~~~~~~~~~~l--~gH~~~V~~v~~~~~~~~l~s~s~Dg~v~vWd~~~~~~~~~~~h~~--~V 105 (350)
||++ ..++.|+.+.-.|.++++.+... .+....+..-.+..+|+ +..++.+|.+...|..+++.+....-.. .+
T Consensus 68 dg~v-~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DGTV-YVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYY 145 (370)
T ss_pred CCeE-EEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEE
Confidence 4444 44578888888888888755322 22111222222223666 4556788888888888888877765444 11
Q ss_pred eEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCC--CCcEEEEEEeCCCCcEEEEEeC--CCeEEEEECCCCcee
Q 018784 106 RACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNS--SGSIRTVAWLHSDQTILSSCTD--SGGVRLWDARSGKIV 181 (350)
Q Consensus 106 ~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~s~~~--dg~i~iwd~~~~~~~ 181 (350)
..-..-.++ .+..++.++.+...|..+++......... ...+..--. ..++.+++. .. ++.+.-.|+++|...
T Consensus 146 ~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~vy~~-~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 146 ASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGTVYVG-SDGYDGILYALNAEDGTLK 222 (370)
T ss_pred ecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce-eecceEEEe-cCCCcceEEEEEccCCcEe
Confidence 111111222 22222244555544444333221110000 000000000 122333333 23 456666788888776
Q ss_pred EeecCCCCeEE-----EE------EecCCcEEEEEcCCcEEEEECCCcceeeeeecC
Q 018784 182 QTLETKSPVTS-----AE------VSRDGRYITTADGSSVKFWDANHFGLVKGYNMP 227 (350)
Q Consensus 182 ~~~~~~~~v~~-----~~------~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~ 227 (350)
........+.. .. +.-++.....+.++.+...|..++..+..+..+
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 66432111110 11 111223334445566788888888877766654
No 492
>PLN02193 nitrile-specifier protein
Probab=62.16 E-value=1.5e+02 Score=28.24 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=29.4
Q ss_pred CcEEEEECCCcceeeeeec---CCCCceeEecCCCCcEEEEecCC--------------CeEEEEEcccCe
Q 018784 208 SSVKFWDANHFGLVKGYNM---PCNTESASLEPKLGNIFIAGGED--------------MWVHVFDFHTGE 261 (350)
Q Consensus 208 ~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~sg~~d--------------~~i~v~d~~~~~ 261 (350)
..+.+||+.+....+.... +............+++++.|+.. +.+.+||+.+.+
T Consensus 343 ~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 343 DDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred CceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCE
Confidence 4588999887554332211 22222222222346888888863 247788876543
No 493
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=62.00 E-value=23 Score=20.25 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=13.8
Q ss_pred cCCcEEEEEcCCcEEEEECC
Q 018784 197 RDGRYITTADGSSVKFWDAN 216 (350)
Q Consensus 197 ~~~~~l~~~~~~~i~vwd~~ 216 (350)
.++.+++.+.++.+..+|.+
T Consensus 20 ~~g~vyv~~~dg~l~ald~~ 39 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAA 39 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT
T ss_pred ECCEEEEEcCCCEEEEEeCC
Confidence 35666677778888888865
No 494
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=61.98 E-value=1.4 Score=40.84 Aligned_cols=127 Identities=16% Similarity=0.165 Sum_probs=80.9
Q ss_pred cCCCccEEEEEeCCCCeeEeeCCCCceeeeccCccCCeEEEEECCCCcE-EEEeeCCCeEEEeeCCCCCeee-ee--ecc
Q 018784 27 ITPDGFFLVSASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDANALF-SASGSADFTAKLWDALTGDEKH-SF--EHK 102 (350)
Q Consensus 27 ~s~dg~~lasgs~d~~v~iw~~~~~~~~~~l~gH~~~V~~v~~~~~~~~-l~s~s~Dg~v~vWd~~~~~~~~-~~--~h~ 102 (350)
+.+.+.-|+.++.+..+..||-. ++....+. .++....++|+.++.. ++-+-..+.+.+||+.+..... .. .+.
T Consensus 42 w~~e~~nlavaca~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg~~s 119 (615)
T KOG2247|consen 42 WRPEGHNLAVACANTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSS 119 (615)
T ss_pred EecCCCceehhhhhhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccCcch
Confidence 34566668889998888888843 33332222 2344456778777654 3445677899999986543211 11 233
Q ss_pred ccEeEEEEcCCCCeEEEeeCCCeEEEEECCCCCCCCeeecCCCCcEEEEEEeCCCC
Q 018784 103 HIVRACAFSEDTHLLLTGGFEKILRIFDLNRPDAPPREVGNSSGSIRTVAWLHSDQ 158 (350)
Q Consensus 103 ~~V~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 158 (350)
... +.|++....++.+-..+.+.|++........ ..+.|..++.++++...+.
T Consensus 120 ~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~ii-v~Gkh~RRgtq~av~lEd~ 172 (615)
T KOG2247|consen 120 KSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRII-VMGKHQRRGTQIAVTLEDY 172 (615)
T ss_pred HHH--HhhccCCccccccccccceEEEeccchhhhh-hhcccccceeEEEecccce
Confidence 222 5788888888888888999999875433222 2345777888888876554
No 495
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=57.40 E-value=98 Score=24.71 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=24.0
Q ss_pred CcEEEEEEeCCC-----CcEEEEEeCCCeEEEEECC
Q 018784 146 GSIRTVAWLHSD-----QTILSSCTDSGGVRLWDAR 176 (350)
Q Consensus 146 ~~v~~~~~~~~~-----~~~~~s~~~dg~i~iwd~~ 176 (350)
..+..++|+|.+ +-+|+..+.++.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 478999999853 3467788888999999754
No 496
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=53.73 E-value=32 Score=17.98 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=16.3
Q ss_pred EeEEEEcCCCCeEEEeeCCCeEEEE
Q 018784 105 VRACAFSEDTHLLLTGGFEKILRIF 129 (350)
Q Consensus 105 V~~~~~~~~~~~l~sg~~d~~v~vw 129 (350)
...++..++|+++++=.....|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4566777777777666666666554
No 497
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.61 E-value=1.2e+02 Score=32.24 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=30.0
Q ss_pred CCCcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784 268 GHHGPVHCVRFSPGGESYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 268 ~h~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~ 301 (350)
.+.++|..+..-.....+.+=++.|+|.+|++..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 5678999999988888899999999999999865
No 498
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=53.25 E-value=2.9e+02 Score=28.99 Aligned_cols=108 Identities=13% Similarity=0.146 Sum_probs=64.6
Q ss_pred EEEecCCcEEEEEcCCcEEEEECCCcceeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEccc-CeeEEeec--CC
Q 018784 193 AEVSRDGRYITTADGSSVKFWDANHFGLVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHT-GEQIGCNK--GH 269 (350)
Q Consensus 193 ~~~~~~~~~l~~~~~~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~-~~~~~~~~--~h 269 (350)
.++.|...++.++-+..+++||+.+.++.+.......+..++-....+..+++|...-.++++-.+. ++.+..+- .-
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~ 1018 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESVHFVRYRREDNQLIVFADDPV 1018 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceEEEEEEecCCCeEEEEeCCCc
Confidence 4566766677788888999999988777665544332222222222456677777666666655543 23333332 34
Q ss_pred CcCEEEEEEcCCCCEEEEecCCCcEEEecCCC
Q 018784 270 HGPVHCVRFSPGGESYASGSEDGTIRIWQTNP 301 (350)
Q Consensus 270 ~~~v~~l~~sp~~~~lasgs~Dg~v~vw~~~~ 301 (350)
+.+|+++.+-..+ .+|-+..=|.+.+-.+.+
T Consensus 1019 pR~Vt~~~~lD~~-tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1019 PRHVTALELLDYD-TVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred cceeeEEEEecCC-ceeeccccCcEEEEECCC
Confidence 5678888776544 455555556666665543
No 499
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=51.96 E-value=45 Score=21.04 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCEEEEecC-----CCcEEEecCC
Q 018784 272 PVHCVRFSPGGESYASGSE-----DGTIRIWQTN 300 (350)
Q Consensus 272 ~v~~l~~sp~~~~lasgs~-----Dg~v~vw~~~ 300 (350)
.+++++..|||++|+.|.. +....|+++.
T Consensus 2 ~~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln 35 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYVDNSSGNNDFVLARLN 35 (55)
T ss_pred ceEEEEECCCCcEEEEEEeecCCCcccEEEEEEC
Confidence 3678899999999998853 3455566654
No 500
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=51.34 E-value=1.4e+02 Score=28.03 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=58.5
Q ss_pred EEEEEcCCcEEEE-ECCCcc-----eeeeeecCCCCceeEecCCCCcEEEEecCCCeEEEEEcccCeeEEeecCCCcCEE
Q 018784 201 YITTADGSSVKFW-DANHFG-----LVKGYNMPCNTESASLEPKLGNIFIAGGEDMWVHVFDFHTGEQIGCNKGHHGPVH 274 (350)
Q Consensus 201 ~l~~~~~~~i~vw-d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d~~i~v~d~~~~~~~~~~~~h~~~v~ 274 (350)
+++...||.|.-| |.+... .++.+................+-+++=+..|++.++.....+.+..... -..+.
T Consensus 283 LLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~-~~~~~ 361 (733)
T COG4590 283 LLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA-YQAPQ 361 (733)
T ss_pred EEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhh-hcCcc
Confidence 4555566666555 554322 2333333222222222233456677777888888776544333322111 22566
Q ss_pred EEEEcCCCCEEEEecCCCcEEEecCCCCCccc
Q 018784 275 CVRFSPGGESYASGSEDGTIRIWQTNPPNHEE 306 (350)
Q Consensus 275 ~l~~sp~~~~lasgs~Dg~v~vw~~~~~~~~~ 306 (350)
.+++||.+.++++- ..|.++++.++++..+-
T Consensus 362 ~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pei 392 (733)
T COG4590 362 LVAMSPNQAYLLSE-DQGKIRLAQLENRNPEI 392 (733)
T ss_pred eeeeCcccchheee-cCCceEEEEecCCCCCc
Confidence 78999999988763 34679999887666543
Done!