BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018789
         (350 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4ATI|A Chain A, Mitf:m-Box Complex
 pdb|4ATI|B Chain B, Mitf:m-Box Complex
 pdb|4ATK|A Chain A, Mitf:e-Box Complex
 pdb|4ATK|B Chain B, Mitf:e-Box Complex
          Length = 118

 Score = 33.1 bits (74), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)

Query: 278 SIAERVRRTRISERMRKLQELVP---NMDKQTNTADMLDLAVDYIKDLQNQFKTLSD--N 332
           ++ ER RR  I++R+++L  L+P   + D + N   +L  +VDYI+ LQ + +   D  N
Sbjct: 32  NLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91

Query: 333 RAK 335
           R K
Sbjct: 92  RQK 94


>pdb|4ATH|A Chain A, Mitf Apo Structure
 pdb|4ATH|B Chain B, Mitf Apo Structure
          Length = 83

 Score = 29.6 bits (65), Expect = 2.7,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 285 RTRISERMRKLQELVP---NMDKQTNTADMLDLAVDYIKDLQNQFKTLSD--NRAK 335
           R  I++R+++L  L+P   + D + N   +L  +VDYI+ LQ + +   D  NR K
Sbjct: 4   RFNINDRIKELGTLIPKSNDPDXRWNKGTILKASVDYIRKLQREQQRAKDLENRQK 59


>pdb|1UKL|C Chain C, Crystal Structure Of Importin-Beta And Srebp-2 Complex
 pdb|1UKL|D Chain D, Crystal Structure Of Importin-Beta And Srebp-2 Complex
 pdb|1UKL|E Chain E, Crystal Structure Of Importin-Beta And Srebp-2 Complex
 pdb|1UKL|F Chain F, Crystal Structure Of Importin-Beta And Srebp-2 Complex
          Length = 61

 Score = 29.3 bits (64), Expect = 3.1,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 27/39 (69%)

Query: 285 RTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQ 323
           R+ I++++ +L++LV   D + + + +L  A+DYIK LQ
Sbjct: 1   RSSINDKIIELKDLVXGTDAKXHKSGVLRKAIDYIKYLQ 39


>pdb|4AYA|A Chain A, Crystal Structure Of Id2 Hlh Homodimer At 2.1a Resolution
 pdb|4AYA|B Chain B, Crystal Structure Of Id2 Hlh Homodimer At 2.1a Resolution
          Length = 97

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)

Query: 294 KLQELVPNM--DKQTNTADMLDLAVDYIKDLQ 323
           KL+ELVP++  +K+ +  ++L   +DYI DLQ
Sbjct: 46  KLKELVPSIPQNKKVSKMEILQHVIDYILDLQ 77


>pdb|1AM9|A Chain A, Human Srebp-1a Bound To Ldl Receptor Promoter
 pdb|1AM9|B Chain B, Human Srebp-1a Bound To Ldl Receptor Promoter
 pdb|1AM9|C Chain C, Human Srebp-1a Bound To Ldl Receptor Promoter
 pdb|1AM9|D Chain D, Human Srebp-1a Bound To Ldl Receptor Promoter
          Length = 82

 Score = 28.9 bits (63), Expect = 4.5,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 35/60 (58%)

Query: 270 RGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTL 329
           RG      +  E+  R+ I++++ +L++LV   + + N + +L  A+DYI+ LQ+  + L
Sbjct: 3   RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKL 62


>pdb|1R05|A Chain A, Solution Structure Of Max B-Hlh-Lz
 pdb|1R05|B Chain B, Solution Structure Of Max B-Hlh-Lz
          Length = 87

 Score = 28.1 bits (61), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 281 ERVRRTRISERMRKLQELVPNMD-KQTNTADMLDLAVDYIKDLQNQFKTL 329
           ER RR  I +    L++ VP++  ++ + A +LD A +YI+ ++ +  TL
Sbjct: 12  ERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKVHTL 61


>pdb|1DOV|A Chain A, Crystal Structure Of The Alpha-Catenin Dimerization Domain
          Length = 181

 Score = 28.1 bits (61), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 233 KREQGNGELGNSTSAEMAAVEKFLQFQDSVPCKIRAKRGCATHPRSIAERVRRTRISERM 292
           KR+Q   ++GN    +MAA    LQ   +VP    A + C  HP   A +  R  I +++
Sbjct: 112 KRQQELKDVGNRD--QMAAARGILQ--KNVPILYTASQACLQHPDVAAYKANRDLIYKQL 167

Query: 293 RK 294
           ++
Sbjct: 168 QQ 169


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.126    0.354 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,768,537
Number of Sequences: 62578
Number of extensions: 299227
Number of successful extensions: 416
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 10
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)