Query 018789
Match_columns 350
No_of_seqs 194 out of 838
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 04:03:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.3 2.1E-12 4.5E-17 94.8 5.9 52 275-326 6-59 (60)
2 smart00353 HLH helix loop heli 99.3 4.4E-12 9.5E-17 91.7 6.3 50 278-327 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.3 4.2E-12 9E-17 93.2 5.6 48 276-323 4-55 (55)
4 KOG1318 Helix loop helix trans 99.2 3.8E-12 8.3E-17 127.9 3.8 57 272-328 232-291 (411)
5 KOG1319 bHLHZip transcription 99.0 1.3E-10 2.9E-15 107.1 2.2 75 276-350 65-149 (229)
6 KOG4304 Transcriptional repres 98.6 1.9E-08 4.2E-13 95.9 2.6 51 276-326 35-92 (250)
7 KOG3960 Myogenic helix-loop-he 98.4 5.1E-07 1.1E-11 86.6 6.8 72 262-333 104-179 (284)
8 KOG2588 Predicted DNA-binding 98.3 3.6E-07 7.7E-12 99.6 3.0 62 272-333 275-336 (953)
9 KOG3561 Aryl-hydrocarbon recep 98.2 1.1E-06 2.4E-11 95.1 5.4 52 274-325 21-75 (803)
10 KOG2483 Upstream transcription 97.9 3.9E-05 8.4E-10 72.9 7.6 59 275-333 61-121 (232)
11 KOG4029 Transcription factor H 97.5 6.8E-05 1.5E-09 69.8 3.0 57 277-333 113-172 (228)
12 PLN03217 transcription factor 97.4 0.00047 1E-08 57.1 6.3 54 285-338 19-77 (93)
13 KOG0561 bHLH transcription fac 97.4 9.9E-05 2.2E-09 72.9 2.5 51 278-329 65-117 (373)
14 KOG3910 Helix loop helix trans 95.3 0.014 2.9E-07 61.3 3.2 65 278-343 531-598 (632)
15 KOG4447 Transcription factor T 90.4 0.14 2.9E-06 46.9 1.5 48 276-324 81-130 (173)
16 KOG3558 Hypoxia-inducible fact 89.2 0.29 6.3E-06 53.4 3.0 42 280-321 53-97 (768)
17 KOG3560 Aryl-hydrocarbon recep 87.6 0.51 1.1E-05 50.6 3.5 40 281-321 33-76 (712)
18 KOG3559 Transcriptional regula 84.7 0.93 2E-05 47.3 3.6 44 279-322 7-53 (598)
19 KOG4395 Transcription factor A 70.8 5.8 0.00012 39.2 4.2 49 278-326 179-229 (285)
20 KOG3898 Transcription factor N 68.9 3.1 6.7E-05 40.2 2.0 46 278-324 77-125 (254)
21 COG3074 Uncharacterized protei 37.9 47 0.001 27.2 3.6 24 311-334 12-35 (79)
22 KOG3582 Mlx interactors and re 36.7 13 0.00028 41.3 0.4 56 275-333 789-848 (856)
23 PRK15422 septal ring assembly 34.6 56 0.0012 27.0 3.6 23 311-333 12-34 (79)
24 KOG4447 Transcription factor T 33.2 30 0.00064 32.1 2.0 45 280-324 29-74 (173)
25 PF06005 DUF904: Protein of un 28.9 86 0.0019 25.1 3.8 22 312-333 13-34 (72)
26 PF04508 Pox_A_type_inc: Viral 27.7 71 0.0015 20.8 2.5 19 319-337 3-21 (23)
27 TIGR00986 3a0801s05tom22 mitoc 25.6 46 0.00099 30.3 1.9 36 286-322 49-84 (145)
28 PF13334 DUF4094: Domain of un 23.0 1.3E+02 0.0028 25.2 4.0 26 311-336 67-92 (95)
29 PRK13702 replication protein; 21.3 1.7E+02 0.0036 24.6 4.2 43 275-317 22-76 (85)
30 PF14689 SPOB_a: Sensor_kinase 21.1 2E+02 0.0043 21.8 4.4 41 282-330 17-57 (62)
31 KOG3582 Mlx interactors and re 20.4 29 0.00063 38.7 -0.5 50 276-325 654-707 (856)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.33 E-value=2.1e-12 Score=94.76 Aligned_cols=52 Identities=38% Similarity=0.671 Sum_probs=48.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhcCCCC--CCCCCHHHHHHHHHHHHHHHHHHH
Q 018789 275 HPRSIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQF 326 (350)
Q Consensus 275 ~~HsiaERrRRerINeri~~Lr~LVP~~--~K~~dKAsIL~eAI~YIK~LQ~qv 326 (350)
..|+..||+||++||+.|..|+.|||.+ ..+++|+.||+.||+||+.|+.++
T Consensus 6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999 345899999999999999999876
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.31 E-value=4.4e-12 Score=91.67 Aligned_cols=50 Identities=38% Similarity=0.726 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCC--CCCCCHHHHHHHHHHHHHHHHHHHH
Q 018789 278 SIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFK 327 (350)
Q Consensus 278 siaERrRRerINeri~~Lr~LVP~~--~K~~dKAsIL~eAI~YIK~LQ~qv~ 327 (350)
+..||+||++||+.|..|+.|||.+ ..+++|++||++||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999999964 2348999999999999999999876
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.29 E-value=4.2e-12 Score=93.25 Aligned_cols=48 Identities=40% Similarity=0.652 Sum_probs=44.4
Q ss_pred CcchHHHHHHHHHHHHHHHHhhcCCCC----CCCCCHHHHHHHHHHHHHHHH
Q 018789 276 PRSIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 323 (350)
Q Consensus 276 ~HsiaERrRRerINeri~~Lr~LVP~~----~K~~dKAsIL~eAI~YIK~LQ 323 (350)
.|+..||+||++||+.|..|+.|||.+ ..+++|++||+.||+||+.||
T Consensus 4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 478999999999999999999999987 345899999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.24 E-value=3.8e-12 Score=127.95 Aligned_cols=57 Identities=28% Similarity=0.578 Sum_probs=50.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHhhcCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHH
Q 018789 272 CATHPRSIAERVRRTRISERMRKLQELVPNMDK---QTNTADMLDLAVDYIKDLQNQFKT 328 (350)
Q Consensus 272 ~at~~HsiaERrRRerINeri~~Lr~LVP~~~K---~~dKAsIL~eAI~YIK~LQ~qv~~ 328 (350)
+++..|+++|||||++||+||++|..|||.|.. +++|..||..+++||+.||+..++
T Consensus 232 ~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 232 RKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 344689999999999999999999999999943 368999999999999999886663
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.00 E-value=1.3e-10 Score=107.08 Aligned_cols=75 Identities=29% Similarity=0.367 Sum_probs=63.8
Q ss_pred CcchHHHHHHHHHHHHHHHHhhcCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhcccccccc
Q 018789 276 PRSIAERVRRTRISERMRKLQELVPNMDK------QTNTADMLDLAVDYIKDLQNQFKTLSDNR----AKCKCSKIQKPV 345 (350)
Q Consensus 276 ~HsiaERrRRerINeri~~Lr~LVP~~~K------~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~----~~~~c~~~~k~~ 345 (350)
.|.-+||+||+-|+..+..|++|||.|.. ++.||.||.++|+||.+|.+++.+.+++. +..+++.+.|..
T Consensus 65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~iIk~~ 144 (229)
T KOG1319|consen 65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIIKVN 144 (229)
T ss_pred HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999998754 26899999999999999998887777665 667888887777
Q ss_pred cccCC
Q 018789 346 ENQIV 350 (350)
Q Consensus 346 ~~qIv 350 (350)
++|+|
T Consensus 145 YEqM~ 149 (229)
T KOG1319|consen 145 YEQMV 149 (229)
T ss_pred HHHHH
Confidence 76653
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.60 E-value=1.9e-08 Score=95.85 Aligned_cols=51 Identities=31% Similarity=0.580 Sum_probs=44.9
Q ss_pred CcchHHHHHHHHHHHHHHHHhhcCCCCCC-------CCCHHHHHHHHHHHHHHHHHHH
Q 018789 276 PRSIAERVRRTRISERMRKLQELVPNMDK-------QTNTADMLDLAVDYIKDLQNQF 326 (350)
Q Consensus 276 ~HsiaERrRRerINeri~~Lr~LVP~~~K-------~~dKAsIL~eAI~YIK~LQ~qv 326 (350)
.|-+.|||||+|||+-|.+|++|||.+.| +++||+||+.||+|++.||.+.
T Consensus 35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~ 92 (250)
T KOG4304|consen 35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ 92 (250)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 45689999999999999999999996644 2789999999999999998654
No 7
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.41 E-value=5.1e-07 Score=86.63 Aligned_cols=72 Identities=21% Similarity=0.389 Sum_probs=60.2
Q ss_pred CcccccCcCCCCCCCcc---hHHHHHHHHHHHHHHHH-hhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018789 262 VPCKIRAKRGCATHPRS---IAERVRRTRISERMRKL-QELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNR 333 (350)
Q Consensus 262 v~~k~RakR~~at~~Hs---iaERrRRerINeri~~L-r~LVP~~~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~ 333 (350)
+.||..+|+.-.++.+. +-||||=.|+||.|.+| |.-+++.+..+.|+.||..||+||..||.-++++.+..
T Consensus 104 wackackrks~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~ 179 (284)
T KOG3960|consen 104 WACKACKRKSTSVDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE 179 (284)
T ss_pred HhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 35676666666555554 44999999999999999 67889999999999999999999999999888887654
No 8
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.29 E-value=3.6e-07 Score=99.58 Aligned_cols=62 Identities=29% Similarity=0.472 Sum_probs=56.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018789 272 CATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNR 333 (350)
Q Consensus 272 ~at~~HsiaERrRRerINeri~~Lr~LVP~~~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~ 333 (350)
.++..|+++|||.|..||+||.+|++|||+...++.|..+|..||+||++|+...+.|+.+.
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~ 336 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLEN 336 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhh
Confidence 44789999999999999999999999999988779999999999999999998777766555
No 9
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.23 E-value=1.1e-06 Score=95.06 Aligned_cols=52 Identities=27% Similarity=0.485 Sum_probs=48.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhcCCCCC---CCCCHHHHHHHHHHHHHHHHHH
Q 018789 274 THPRSIAERVRRTRISERMRKLQELVPNMD---KQTNTADMLDLAVDYIKDLQNQ 325 (350)
Q Consensus 274 t~~HsiaERrRRerINeri~~Lr~LVP~~~---K~~dKAsIL~eAI~YIK~LQ~q 325 (350)
+.+|+.+|||||+++|..|.+|.+|||.|. .++||-+||.+||++||.++++
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 467899999999999999999999999997 5699999999999999999875
No 10
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.87 E-value=3.9e-05 Score=72.94 Aligned_cols=59 Identities=24% Similarity=0.388 Sum_probs=47.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhcCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018789 275 HPRSIAERVRRTRISERMRKLQELVPNMDKQT--NTADMLDLAVDYIKDLQNQFKTLSDNR 333 (350)
Q Consensus 275 ~~HsiaERrRRerINeri~~Lr~LVP~~~K~~--dKAsIL~eAI~YIK~LQ~qv~~Le~~~ 333 (350)
..|+.-||+||..|.+.|..|+.+||.....+ ..+.||++|++||+.|+.+..+.....
T Consensus 61 ~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~ 121 (232)
T KOG2483|consen 61 AHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDI 121 (232)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHH
Confidence 35788899999999999999999999765432 258999999999999987655544433
No 11
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.49 E-value=6.8e-05 Score=69.83 Aligned_cols=57 Identities=26% Similarity=0.400 Sum_probs=50.3
Q ss_pred cchHHHHHHHHHHHHHHHHhhcCCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018789 277 RSIAERVRRTRISERMRKLQELVPN--M-DKQTNTADMLDLAVDYIKDLQNQFKTLSDNR 333 (350)
Q Consensus 277 HsiaERrRRerINeri~~Lr~LVP~--~-~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~ 333 (350)
++..||.|=.-+|..|..||.+||. . +|++.|..+|..||.||++|++.++.-+...
T Consensus 113 ~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 113 RNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 4566999999999999999999995 3 6679999999999999999999888777665
No 12
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.38 E-value=0.00047 Score=57.10 Aligned_cols=54 Identities=24% Similarity=0.479 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhcCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 018789 285 RTRISERMRKLQELVPNMDK-----QTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKC 338 (350)
Q Consensus 285 RerINeri~~Lr~LVP~~~K-----~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~~~c 338 (350)
-+.|+|-+.+||.|+|.... +...+-||+||+.||+.|+.+|..|.+.+..-..
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~ 77 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA 77 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999996422 2578899999999999999999999998855443
No 13
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.36 E-value=9.9e-05 Score=72.86 Aligned_cols=51 Identities=29% Similarity=0.478 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 018789 278 SIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFKTL 329 (350)
Q Consensus 278 siaERrRRerINeri~~Lr~LVP~~--~K~~dKAsIL~eAI~YIK~LQ~qv~~L 329 (350)
+-.||||=..||-.|..||.|+|.. .| +.||.||+.+.+||.+|+.+.-+|
T Consensus 65 NsNERRRMQSINAGFqsLr~LlPr~eGEK-LSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 65 NSNERRRMQSINAGFQSLRALLPRKEGEK-LSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred cchHHHHHHhhhHHHHHHHHhcCcccchh-hHHHHHHHHHHHHHHHHHhccccc
Confidence 3459999999999999999999964 45 899999999999999998654443
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=95.25 E-value=0.014 Score=61.33 Aligned_cols=65 Identities=25% Similarity=0.363 Sum_probs=48.6
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccc
Q 018789 278 SIAERVRRTRISERMRKLQELVPN---MDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCKCSKIQK 343 (350)
Q Consensus 278 siaERrRRerINeri~~Lr~LVP~---~~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~~~c~~~~k 343 (350)
+..||.|=.-|||.|++|..+.-- .+|--.|-.||-.||.-|-.|++||.+- ..+-|..|+.+-+
T Consensus 531 NARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER-NLNPKaaclkRRe 598 (632)
T KOG3910|consen 531 NARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER-NLNPKAACLKRRE 598 (632)
T ss_pred hhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc-cCChhhhhhhccc
Confidence 344777778899999999988753 3443468899999999999999999753 2335667776543
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=90.42 E-value=0.14 Score=46.91 Aligned_cols=48 Identities=29% Similarity=0.464 Sum_probs=42.5
Q ss_pred CcchHHHHHHHHHHHHHHHHhhcCCC--CCCCCCHHHHHHHHHHHHHHHHH
Q 018789 276 PRSIAERVRRTRISERMRKLQELVPN--MDKQTNTADMLDLAVDYIKDLQN 324 (350)
Q Consensus 276 ~HsiaERrRRerINeri~~Lr~LVP~--~~K~~dKAsIL~eAI~YIK~LQ~ 324 (350)
-|++-||+|-..+|+.|.+||.++|. .+| +.|.--|..|-.||-+|=.
T Consensus 81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdk-lSkiqtLklA~ryidfl~~ 130 (173)
T KOG4447|consen 81 MANVRERQRTQSLNEAFAALRKIIPTLPSDK-LSKIQTLKLAARYIDFLYQ 130 (173)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhcCCCCccc-cccccchhhcccCCchhhh
Confidence 36788999999999999999999996 455 7888999999999999954
No 16
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=89.17 E-value=0.29 Score=53.37 Aligned_cols=42 Identities=26% Similarity=0.509 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC---CCCCCHHHHHHHHHHHHHH
Q 018789 280 AERVRRTRISERMRKLQELVPNM---DKQTNTADMLDLAVDYIKD 321 (350)
Q Consensus 280 aERrRRerINeri~~Lr~LVP~~---~K~~dKAsIL~eAI~YIK~ 321 (350)
|-|.||.|=|+-|.+|..++|-. .-++|||+|+..||-|+|-
T Consensus 53 AARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 53 AARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 67999999999999999999943 3358999999999999873
No 17
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=87.61 E-value=0.51 Score=50.57 Aligned_cols=40 Identities=25% Similarity=0.531 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCC----CCCCCCHHHHHHHHHHHHHH
Q 018789 281 ERVRRTRISERMRKLQELVPN----MDKQTNTADMLDLAVDYIKD 321 (350)
Q Consensus 281 ERrRRerINeri~~Lr~LVP~----~~K~~dKAsIL~eAI~YIK~ 321 (350)
-+|-|+|+|--+..|..|+|- +.| +||-+||..+|-|++.
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisK-LDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISK-LDKLSVLRLSVSYLRV 76 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhh-hhhhhhhhhhHHHHHH
Confidence 477899999999999999994 456 8999999999999864
No 18
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=84.72 E-value=0.93 Score=47.31 Aligned_cols=44 Identities=27% Similarity=0.405 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCC---CCCCCHHHHHHHHHHHHHHH
Q 018789 279 IAERVRRTRISERMRKLQELVPNM---DKQTNTADMLDLAVDYIKDL 322 (350)
Q Consensus 279 iaERrRRerINeri~~Lr~LVP~~---~K~~dKAsIL~eAI~YIK~L 322 (350)
-+-|.||++=|..|.+|.+|+|-. +.|.||++|+..|-.|||--
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 357899999999999999999954 44689999999999999853
No 19
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=70.83 E-value=5.8 Score=39.15 Aligned_cols=49 Identities=27% Similarity=0.399 Sum_probs=42.2
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCC--CCCCCHHHHHHHHHHHHHHHHHHH
Q 018789 278 SIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQF 326 (350)
Q Consensus 278 siaERrRRerINeri~~Lr~LVP~~--~K~~dKAsIL~eAI~YIK~LQ~qv 326 (350)
+.-||+|=..+|..|..|+..||.. ++++.|=.-|.-|-.||-.|-...
T Consensus 179 narErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 179 NARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred chHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 4559999999999999999999964 456889999999999999886654
No 20
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=68.92 E-value=3.1 Score=40.19 Aligned_cols=46 Identities=28% Similarity=0.512 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCC---CCCCCCHHHHHHHHHHHHHHHHH
Q 018789 278 SIAERVRRTRISERMRKLQELVPN---MDKQTNTADMLDLAVDYIKDLQN 324 (350)
Q Consensus 278 siaERrRRerINeri~~Lr~LVP~---~~K~~dKAsIL~eAI~YIK~LQ~ 324 (350)
+.-||+|=-.+|+-|..||++||. ..| +.|...|..|-.||..|++
T Consensus 77 NaRER~RMH~LNdAld~LReviP~~~~~~k-lskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 77 NARERTRMHDLNDALDALREVIPHGLHPPK-LSKIETLRLAANYIAALSE 125 (254)
T ss_pred cchhhccccchhHHHHHhHhhccCcCCCCC-CCcchhHHhhhcchhhhcc
Confidence 334898889999999999999994 333 7899999999999999975
No 21
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.94 E-value=47 Score=27.17 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 018789 311 MLDLAVDYIKDLQNQFKTLSDNRA 334 (350)
Q Consensus 311 IL~eAI~YIK~LQ~qv~~Le~~~~ 334 (350)
-+.-||+.|.-||.+|++|++++.
T Consensus 12 KiqqAvdTI~LLQmEieELKEknn 35 (79)
T COG3074 12 KVQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357799999999999999998774
No 22
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=36.70 E-value=13 Score=41.31 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=45.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhcCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018789 275 HPRSIAERVRRTRISERMRKLQELVPNMD----KQTNTADMLDLAVDYIKDLQNQFKTLSDNR 333 (350)
Q Consensus 275 ~~HsiaERrRRerINeri~~Lr~LVP~~~----K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~ 333 (350)
..|..+|||||..+-+++..|-+|.|... +.+.+++||. +.|+.+++.-+.+.+..
T Consensus 789 a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~ 848 (856)
T KOG3582|consen 789 AGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKI 848 (856)
T ss_pred cchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhh
Confidence 34566799999999999999999999653 3478899999 88999988877776644
No 23
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=34.58 E-value=56 Score=27.04 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 018789 311 MLDLAVDYIKDLQNQFKTLSDNR 333 (350)
Q Consensus 311 IL~eAI~YIK~LQ~qv~~Le~~~ 333 (350)
-+..|||-|.-||++|++|++++
T Consensus 12 KIqqAvdtI~LLqmEieELKekn 34 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKN 34 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999876
No 24
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=33.24 E-value=30 Score=32.09 Aligned_cols=45 Identities=27% Similarity=0.394 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCC-CCHHHHHHHHHHHHHHHHH
Q 018789 280 AERVRRTRISERMRKLQELVPNMDKQ-TNTADMLDLAVDYIKDLQN 324 (350)
Q Consensus 280 aERrRRerINeri~~Lr~LVP~~~K~-~dKAsIL~eAI~YIK~LQ~ 324 (350)
.||.|..++++.+.-|+.|+|++... +.+---|..+-+||.+|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 48889999999999999999987531 1111225556666666543
No 25
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=28.88 E-value=86 Score=25.10 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 018789 312 LDLAVDYIKDLQNQFKTLSDNR 333 (350)
Q Consensus 312 L~eAI~YIK~LQ~qv~~Le~~~ 333 (350)
+..||+-|..||.++++|+.++
T Consensus 13 i~~aveti~~Lq~e~eeLke~n 34 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKN 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999874
No 26
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=27.74 E-value=71 Score=20.78 Aligned_cols=19 Identities=21% Similarity=0.594 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q 018789 319 IKDLQNQFKTLSDNRAKCK 337 (350)
Q Consensus 319 IK~LQ~qv~~Le~~~~~~~ 337 (350)
|..|+.+|..|+.+++.|.
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5678889999999888875
No 27
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=25.62 E-value=46 Score=30.30 Aligned_cols=36 Identities=14% Similarity=0.346 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHH
Q 018789 286 TRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDL 322 (350)
Q Consensus 286 erINeri~~Lr~LVP~~~K~~dKAsIL~eAI~YIK~L 322 (350)
+-|-|||.+|+++||.... .--......+..++|.+
T Consensus 49 ETl~ERi~ALkDm~Pp~~R-~~i~~~~s~t~s~~ks~ 84 (145)
T TIGR00986 49 ETFTDRIYALKDIVPPTTR-GWIYHKYSTTTNFVKST 84 (145)
T ss_pred CcHHHHHHHHHhhCCHHHH-HHHHHHHHHHHHHHHHH
Confidence 4577889999999997654 23334444444444443
No 28
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=22.99 E-value=1.3e+02 Score=25.22 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018789 311 MLDLAVDYIKDLQNQFKTLSDNRAKC 336 (350)
Q Consensus 311 IL~eAI~YIK~LQ~qv~~Le~~~~~~ 336 (350)
=+.++-+-|+.|.+.|..||.+++..
T Consensus 67 eV~kTh~aIq~LdKtIS~LEMELAaA 92 (95)
T PF13334_consen 67 EVSKTHEAIQSLDKTISSLEMELAAA 92 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777889999999999998643
No 29
>PRK13702 replication protein; Provisional
Probab=21.27 E-value=1.7e+02 Score=24.64 Aligned_cols=43 Identities=23% Similarity=0.381 Sum_probs=29.7
Q ss_pred CCcchHHHHHHH--HHHHHHHHHhhcCCCCCC----------CCCHHHHHHHHHH
Q 018789 275 HPRSIAERVRRT--RISERMRKLQELVPNMDK----------QTNTADMLDLAVD 317 (350)
Q Consensus 275 ~~HsiaERrRRe--rINeri~~Lr~LVP~~~K----------~~dKAsIL~eAI~ 317 (350)
.|.+.+||.|.- |..+.-++|.-+||+.-| .+..|.||+..|+
T Consensus 22 ~Pls~aErQr~svaRKr~THkei~vfi~n~lK~~L~elc~~~glTQAe~IE~LIe 76 (85)
T PRK13702 22 NPLSAAEKQRASVARKRATHKEIKVFIQNPLKDKLMELCEEEGLTQAEMIERLIE 76 (85)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhheeecHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 788999998864 556777889999987654 1345555555554
No 30
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=21.06 E-value=2e+02 Score=21.83 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018789 282 RVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLS 330 (350)
Q Consensus 282 RrRRerINeri~~Lr~LVP~~~K~~dKAsIL~eAI~YIK~LQ~qv~~Le 330 (350)
|+-|=-....+..+..|+--.. .++|.+||+.+-++++.+.
T Consensus 17 R~~RHD~~NhLqvI~gllqlg~--------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQLGK--------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHH
Confidence 5556666777888877774332 4789999999998888774
No 31
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=20.36 E-value=29 Score=38.72 Aligned_cols=50 Identities=28% Similarity=0.326 Sum_probs=40.8
Q ss_pred CcchHHHHHHHHHHHHHHHHhhcCCCCCCC----CCHHHHHHHHHHHHHHHHHH
Q 018789 276 PRSIAERVRRTRISERMRKLQELVPNMDKQ----TNTADMLDLAVDYIKDLQNQ 325 (350)
Q Consensus 276 ~HsiaERrRRerINeri~~Lr~LVP~~~K~----~dKAsIL~eAI~YIK~LQ~q 325 (350)
.|.-+|.+||..|.-.+..|-.++-+..+. +.++.-+..++.||--++.+
T Consensus 654 t~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e 707 (856)
T KOG3582|consen 654 THISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQE 707 (856)
T ss_pred cCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchh
Confidence 467789999999999999999999876653 45566699999999877543
Done!