Query 018789
Match_columns 350
No_of_seqs 194 out of 838
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 06:05:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018789.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018789hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.7 4E-17 1.4E-21 137.7 7.5 81 260-340 14-97 (118)
2 1am9_A Srebp-1A, protein (ster 99.6 8.7E-17 3E-21 127.6 4.5 64 274-337 7-70 (82)
3 4h10_B Circadian locomoter out 99.5 2.8E-15 9.5E-20 117.2 4.0 57 274-330 9-65 (71)
4 1a0a_A BHLH, protein (phosphat 99.5 2.4E-15 8.1E-20 114.5 2.8 54 274-327 3-62 (63)
5 1an4_A Protein (upstream stimu 99.5 4.2E-15 1.4E-19 112.5 2.6 54 273-326 5-63 (65)
6 4h10_A ARYL hydrocarbon recept 99.5 4.4E-15 1.5E-19 116.3 0.8 54 271-324 7-63 (73)
7 1hlo_A Protein (transcription 99.5 7E-14 2.4E-18 109.9 6.7 63 275-337 14-77 (80)
8 1nkp_B MAX protein, MYC proto- 99.5 9.1E-14 3.1E-18 109.7 7.0 60 275-335 4-65 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 2.5E-13 8.7E-18 109.2 7.0 60 275-334 8-69 (88)
10 3u5v_A Protein MAX, transcript 99.4 4.5E-13 1.5E-17 105.6 4.7 57 275-331 7-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 5.5E-12 1.9E-16 100.0 7.6 60 276-335 4-65 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.1 2.3E-11 7.9E-16 94.0 2.6 64 263-326 2-66 (68)
13 4f3l_A Mclock, circadian locom 99.0 3.1E-10 1.1E-14 108.0 6.5 54 273-326 12-65 (361)
14 2ql2_B Neurod1, neurogenic dif 98.9 1.2E-09 4.2E-14 82.4 6.0 51 277-327 6-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 7.3E-10 2.5E-14 107.0 3.1 54 271-325 11-68 (387)
16 4ath_A MITF, microphthalmia-as 98.7 2.3E-08 7.9E-13 80.4 6.9 51 284-334 3-56 (83)
17 2lfh_A DNA-binding protein inh 98.5 3E-08 1E-12 77.1 3.0 47 278-324 19-67 (68)
18 4aya_A DNA-binding protein inh 98.0 1.1E-05 3.7E-10 66.6 6.9 51 281-331 33-85 (97)
19 3muj_A Transcription factor CO 57.9 14 0.00047 32.1 5.0 36 287-322 95-133 (138)
20 2wt7_A Proto-oncogene protein 49.2 40 0.0014 24.7 5.8 39 281-333 1-39 (63)
21 2jee_A YIIU; FTSZ, septum, coi 45.3 21 0.0007 28.4 3.8 27 311-337 14-40 (81)
22 1p3q_Q VPS9P, vacuolar protein 36.7 41 0.0014 24.7 4.0 26 279-304 3-28 (54)
23 2y78_A Peptidyl-prolyl CIS-tra 32.4 13 0.00046 30.6 0.9 23 1-26 1-23 (133)
24 1m2x_A Class B carbapenemase B 31.7 19 0.00065 30.6 1.8 32 296-328 190-221 (223)
25 1a7t_A Metallo-beta-lactamase; 26.2 37 0.0013 29.0 2.7 32 296-328 200-231 (232)
26 1f1f_A Cytochrome C6; heme, pr 23.9 1.6E+02 0.0055 20.8 5.5 40 285-325 48-87 (89)
27 1zme_C Proline utilization tra 23.3 58 0.002 23.2 2.9 18 317-334 44-61 (70)
28 2er8_A Regulatory protein Leu3 21.6 63 0.0021 23.2 2.8 19 317-335 49-67 (72)
29 2ke4_A CDC42-interacting prote 20.1 1.6E+02 0.0054 23.7 5.1 31 306-336 58-88 (98)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.68 E-value=4e-17 Score=137.66 Aligned_cols=81 Identities=26% Similarity=0.399 Sum_probs=53.3
Q ss_pred CCCcccccCcCCCCCCCcchHHHHHHHHHHHHHHHHhhcCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018789 260 DSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDK---QTNTADMLDLAVDYIKDLQNQFKTLSDNRAKC 336 (350)
Q Consensus 260 d~v~~k~RakR~~at~~HsiaERrRRerINeri~~Lr~LVP~~~K---~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~~ 336 (350)
...+.+..+++.+++.+|+++||+||++||++|.+|++|||.+.+ +++|++||+.||+||++||.+++.|+++....
T Consensus 14 t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~~ 93 (118)
T 4ati_A 14 TESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQ 93 (118)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred CcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567778888889999999999999999999999999999853 47899999999999999999999999876544
Q ss_pred hccc
Q 018789 337 KCSK 340 (350)
Q Consensus 337 ~c~~ 340 (350)
..+.
T Consensus 94 ~~l~ 97 (118)
T 4ati_A 94 KKLE 97 (118)
T ss_dssp ----
T ss_pred HHHH
Confidence 4333
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.64 E-value=8.7e-17 Score=127.57 Aligned_cols=64 Identities=23% Similarity=0.402 Sum_probs=58.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018789 274 THPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCK 337 (350)
Q Consensus 274 t~~HsiaERrRRerINeri~~Lr~LVP~~~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~~~ 337 (350)
+..|+++||+||++||++|.+|++|||+++.+++|++||++||+||++||.+++.|+.+.+.-.
T Consensus 7 r~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 7 RTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999965599999999999999999999999999885544
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.54 E-value=2.8e-15 Score=117.18 Aligned_cols=57 Identities=16% Similarity=0.375 Sum_probs=51.7
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 018789 274 THPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLS 330 (350)
Q Consensus 274 t~~HsiaERrRRerINeri~~Lr~LVP~~~K~~dKAsIL~eAI~YIK~LQ~qv~~Le 330 (350)
..+|+++||+||++||++|.+|++|||.+..++||++||+.||+||+.||.++.=|+
T Consensus 9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 347899999999999999999999999876559999999999999999999987664
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.53 E-value=2.4e-15 Score=114.52 Aligned_cols=54 Identities=28% Similarity=0.419 Sum_probs=47.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHhhcCCCCCC------CCCHHHHHHHHHHHHHHHHHHHH
Q 018789 274 THPRSIAERVRRTRISERMRKLQELVPNMDK------QTNTADMLDLAVDYIKDLQNQFK 327 (350)
Q Consensus 274 t~~HsiaERrRRerINeri~~Lr~LVP~~~K------~~dKAsIL~eAI~YIK~LQ~qv~ 327 (350)
..+|+++||+||++||..|.+|+.|||.+.+ +++||+||+.||+||+.||++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 4679999999999999999999999997632 36799999999999999998763
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.50 E-value=4.2e-15 Score=112.45 Aligned_cols=54 Identities=24% Similarity=0.442 Sum_probs=49.0
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhhcCCCCCC-----CCCHHHHHHHHHHHHHHHHHHH
Q 018789 273 ATHPRSIAERVRRTRISERMRKLQELVPNMDK-----QTNTADMLDLAVDYIKDLQNQF 326 (350)
Q Consensus 273 at~~HsiaERrRRerINeri~~Lr~LVP~~~K-----~~dKAsIL~eAI~YIK~LQ~qv 326 (350)
....|+++||+||++||+.|.+|++|||.+.. +++|++||+.||+||+.||+++
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 44679999999999999999999999999873 3799999999999999999865
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.48 E-value=4.4e-15 Score=116.34 Aligned_cols=54 Identities=26% Similarity=0.429 Sum_probs=47.5
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHhhcCCCCC---CCCCHHHHHHHHHHHHHHHHH
Q 018789 271 GCATHPRSIAERVRRTRISERMRKLQELVPNMD---KQTNTADMLDLAVDYIKDLQN 324 (350)
Q Consensus 271 ~~at~~HsiaERrRRerINeri~~Lr~LVP~~~---K~~dKAsIL~eAI~YIK~LQ~ 324 (350)
.+++..|+++||+||++||+.|.+|+.|||.|. .++|||+||+.||+||+.|+.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 334457999999999999999999999999873 338999999999999999974
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=7e-14 Score=109.90 Aligned_cols=63 Identities=25% Similarity=0.444 Sum_probs=56.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhcCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018789 275 HPRSIAERVRRTRISERMRKLQELVPNMD-KQTNTADMLDLAVDYIKDLQNQFKTLSDNRAKCK 337 (350)
Q Consensus 275 ~~HsiaERrRRerINeri~~Lr~LVP~~~-K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~~~ 337 (350)
..|+..||+||..||+.|..|+.|||.+. .+++|++||..||+||+.|++++++|+.+++...
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999873 2389999999999999999999999999886543
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.46 E-value=9.1e-14 Score=109.65 Aligned_cols=60 Identities=27% Similarity=0.470 Sum_probs=54.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhcCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018789 275 HPRSIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFKTLSDNRAK 335 (350)
Q Consensus 275 ~~HsiaERrRRerINeri~~Lr~LVP~~--~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~ 335 (350)
..|+..||+||++||+.|..|+++||.+ .| ++|++||..||+||+.|+.+++.|+.+++.
T Consensus 4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~ 65 (83)
T 1nkp_B 4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDD 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999985 55 899999999999999999999999877744
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.41 E-value=2.5e-13 Score=109.22 Aligned_cols=60 Identities=20% Similarity=0.391 Sum_probs=53.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhcCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018789 275 HPRSIAERVRRTRISERMRKLQELVPNMD--KQTNTADMLDLAVDYIKDLQNQFKTLSDNRA 334 (350)
Q Consensus 275 ~~HsiaERrRRerINeri~~Lr~LVP~~~--K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~ 334 (350)
..|++.||+||+.||++|..|+++||.+. .+++|++||.+||+||++|+.+.+.|..+.+
T Consensus 8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~ 69 (88)
T 1nkp_A 8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEED 69 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999863 3489999999999999999999988876653
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.35 E-value=4.5e-13 Score=105.58 Aligned_cols=57 Identities=28% Similarity=0.317 Sum_probs=49.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHhhcCCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 018789 275 HPRSIAERVRRTRISERMRKLQELVPN---MDKQTNTADMLDLAVDYIKDLQNQFKTLSD 331 (350)
Q Consensus 275 ~~HsiaERrRRerINeri~~Lr~LVP~---~~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~ 331 (350)
..|+..||+||..||++|.+|+++||. .+|..+|+.||..||+||+.||+++++++.
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999995 455347999999999999999999998763
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.29 E-value=5.5e-12 Score=99.99 Aligned_cols=60 Identities=23% Similarity=0.257 Sum_probs=53.3
Q ss_pred CcchHHHHHHHHHHHHHHHHhhcCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 018789 276 PRSIAERVRRTRISERMRKLQELVPNMD--KQTNTADMLDLAVDYIKDLQNQFKTLSDNRAK 335 (350)
Q Consensus 276 ~HsiaERrRRerINeri~~Lr~LVP~~~--K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~ 335 (350)
.|+..||+||..||+.|..|+++||.+. .+++|++||..||+||+.|+.+.+.|..+.+.
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~ 65 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQ 65 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999652 23789999999999999999999998877643
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.10 E-value=2.3e-11 Score=94.05 Aligned_cols=64 Identities=19% Similarity=0.324 Sum_probs=51.2
Q ss_pred cccccCcCCCCCCCcchHHHHHHHHHHHHHHHHhhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHH
Q 018789 263 PCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNM-DKQTNTADMLDLAVDYIKDLQNQF 326 (350)
Q Consensus 263 ~~k~RakR~~at~~HsiaERrRRerINeri~~Lr~LVP~~-~K~~dKAsIL~eAI~YIK~LQ~qv 326 (350)
.||++.........|+..||+|+..||+.|..|+++||.. +++++|..||..||+||..|++.+
T Consensus 2 ~ckr~~~~~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 2 ELKRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcCCCchhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4554332222334578889999999999999999999964 345899999999999999999865
No 13
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.00 E-value=3.1e-10 Score=108.03 Aligned_cols=54 Identities=15% Similarity=0.403 Sum_probs=42.6
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 018789 273 ATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQF 326 (350)
Q Consensus 273 at~~HsiaERrRRerINeri~~Lr~LVP~~~K~~dKAsIL~eAI~YIK~LQ~qv 326 (350)
++.+|+++||+||++||+.|.+|++|||....++||++||+.||+|||.|+...
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 345789999999999999999999999955445999999999999999998653
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.93 E-value=1.2e-09 Score=82.38 Aligned_cols=51 Identities=24% Similarity=0.401 Sum_probs=46.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhcCCCC--CCCCCHHHHHHHHHHHHHHHHHHHH
Q 018789 277 RSIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFK 327 (350)
Q Consensus 277 HsiaERrRRerINeri~~Lr~LVP~~--~K~~dKAsIL~eAI~YIK~LQ~qv~ 327 (350)
|+.-||+|+..||+.|..|+.+||.. +++++|..+|..||+||+.|++.++
T Consensus 6 ~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 6 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 57789999999999999999999975 4569999999999999999998763
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.86 E-value=7.3e-10 Score=106.97 Aligned_cols=54 Identities=28% Similarity=0.403 Sum_probs=47.3
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHhhcCCC----CCCCCCHHHHHHHHHHHHHHHHHH
Q 018789 271 GCATHPRSIAERVRRTRISERMRKLQELVPN----MDKQTNTADMLDLAVDYIKDLQNQ 325 (350)
Q Consensus 271 ~~at~~HsiaERrRRerINeri~~Lr~LVP~----~~K~~dKAsIL~eAI~YIK~LQ~q 325 (350)
+.++.+|+.+||+||++||+.|.+|+.|||. ..| +||++||+.||+|||.|+..
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k-~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSC-CCHHHHHHHHHHHHHHHHCC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccc-cCHHHHHHHHHHHHHHhhcc
Confidence 3345689999999999999999999999994 455 99999999999999999843
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.71 E-value=2.3e-08 Score=80.36 Aligned_cols=51 Identities=29% Similarity=0.524 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhcCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 018789 284 RRTRISERMRKLQELVPNMDK---QTNTADMLDLAVDYIKDLQNQFKTLSDNRA 334 (350)
Q Consensus 284 RRerINeri~~Lr~LVP~~~K---~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~ 334 (350)
-|..||++|.+|.+|||.+.. +++|++||..||+||+.||++++.+.++..
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~ 56 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 56 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 388999999999999997632 379999999999999999998887776653
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.55 E-value=3e-08 Score=77.06 Aligned_cols=47 Identities=28% Similarity=0.408 Sum_probs=41.9
Q ss_pred chHHHHHHHHHHHHHHHHhhcCCCC--CCCCCHHHHHHHHHHHHHHHHH
Q 018789 278 SIAERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQN 324 (350)
Q Consensus 278 siaERrRRerINeri~~Lr~LVP~~--~K~~dKAsIL~eAI~YIK~LQ~ 324 (350)
+.-||+|...||+.|..||++||.. +++++|..+|..||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3459999999999999999999975 4468999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.01 E-value=1.1e-05 Score=66.56 Aligned_cols=51 Identities=27% Similarity=0.438 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 018789 281 ERVRRTRISERMRKLQELVPNM--DKQTNTADMLDLAVDYIKDLQNQFKTLSD 331 (350)
Q Consensus 281 ERrRRerINeri~~Lr~LVP~~--~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~ 331 (350)
||.|=..||+.|..||.+||.. +|++.|..+|..||+||+.|++.++.-..
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~ 85 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLK 85 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5778888999999999999965 55699999999999999999988765443
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=57.88 E-value=14 Score=32.11 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhcCCCC---CCCCCHHHHHHHHHHHHHHH
Q 018789 287 RISERMRKLQELVPNM---DKQTNTADMLDLAVDYIKDL 322 (350)
Q Consensus 287 rINeri~~Lr~LVP~~---~K~~dKAsIL~eAI~YIK~L 322 (350)
-|...|..|+++||.. ..++.|..||..|.|+++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 5889999999999953 23488999999999999877
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=49.20 E-value=40 Score=24.75 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 018789 281 ERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQFKTLSDNR 333 (350)
Q Consensus 281 ERrRRerINeri~~Lr~LVP~~~K~~dKAsIL~eAI~YIK~LQ~qv~~Le~~~ 333 (350)
||++|-+...++.+.+. . ..-.+|+..|+.+|+.|+.++
T Consensus 1 Ekr~rrrerNR~AA~rc-----R---------~rKk~~~~~Le~~v~~L~~~n 39 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC-----R---------NRRRELTDTLQAETDQLEDEK 39 (63)
T ss_dssp CHHHHHHHHHHHHHHHH-----H---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH-----H---------HHHHHHHHHHHHHHHHHHHHH
Confidence 55666666677776654 1 223345555555555555444
No 21
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=45.32 E-value=21 Score=28.42 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 018789 311 MLDLAVDYIKDLQNQFKTLSDNRAKCK 337 (350)
Q Consensus 311 IL~eAI~YIK~LQ~qv~~Le~~~~~~~ 337 (350)
=++.||+-|.-||+++++|+.++..+.
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999998875543
No 22
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=36.70 E-value=41 Score=24.75 Aligned_cols=26 Identities=19% Similarity=0.549 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCC
Q 018789 279 IAERVRRTRISERMRKLQELVPNMDK 304 (350)
Q Consensus 279 iaERrRRerINeri~~Lr~LVP~~~K 304 (350)
.++|-+|..-++-+..|+.+.|+.++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 57888999999999999999999887
No 23
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=32.45 E-value=13 Score=30.56 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCCCCCccccccCchh
Q 018789 1 MDSSTNHNYHQQSNPGLSRFNSAPTA 26 (350)
Q Consensus 1 md~~~~~~~~~~~~sGL~Ry~SAPss 26 (350)
|-++.+| ++++|||.+++.+|..
T Consensus 1 ~~~~~~~---~~~~~~~~~~~~~~~~ 23 (133)
T 2y78_A 1 MGSSHHH---HHHSSGLVPRGSHMTV 23 (133)
T ss_dssp --------------CCSGGGTTTTCC
T ss_pred CCccccc---ccccccceecccCCCc
Confidence 4455443 3689999999999853
No 24
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=31.74 E-value=19 Score=30.59 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=23.9
Q ss_pred hhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018789 296 QELVPNMDKQTNTADMLDLAVDYIKDLQNQFKT 328 (350)
Q Consensus 296 r~LVP~~~K~~dKAsIL~eAI~YIK~LQ~qv~~ 328 (350)
..++|+..... ....|+.+++|++.+++++++
T Consensus 190 ~~i~pgHg~~~-~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 190 QYVVAGHDDWK-DQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp SEEEESBSCCC-STTHHHHHHHHHHHHHHTC--
T ss_pred CEEEeCCCCcC-CHHHHHHHHHHHHHHHHHHhc
Confidence 35778777645 467899999999999988754
No 25
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=26.16 E-value=37 Score=29.02 Aligned_cols=32 Identities=6% Similarity=0.210 Sum_probs=24.2
Q ss_pred hhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 018789 296 QELVPNMDKQTNTADMLDLAVDYIKDLQNQFKT 328 (350)
Q Consensus 296 r~LVP~~~K~~dKAsIL~eAI~YIK~LQ~qv~~ 328 (350)
..++|+.....+ ..+++.+++||+.|++++.+
T Consensus 200 ~~v~pgHg~~~~-~~~~~~~~~~l~~~~~~~~~ 231 (232)
T 1a7t_A 200 RYVVPGHGNYGG-TELIEHTKQIVNQYIESTSK 231 (232)
T ss_dssp SEEEESSSCCBC-THHHHHHHHHHHHHHHHHC-
T ss_pred CEEECCCCCccc-HHHHHHHHHHHHHHHHHhcC
Confidence 457788777444 56889999999999887653
No 26
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=23.94 E-value=1.6e+02 Score=20.82 Aligned_cols=40 Identities=8% Similarity=0.244 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 018789 285 RTRISERMRKLQELVPNMDKQTNTADMLDLAVDYIKDLQNQ 325 (350)
Q Consensus 285 RerINeri~~Lr~LVP~~~K~~dKAsIL~eAI~YIK~LQ~q 325 (350)
++.|.+.+..-...||...+.++... +...+.||+.|..+
T Consensus 48 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~~ 87 (89)
T 1f1f_A 48 VAAVAYQVTNGKNAMPGFNGRLSPLQ-IEDVAAYVVDQAEK 87 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccccCCCHHH-HHHHHHHHHHHhhc
Confidence 45555666655678887765466555 47788999998753
No 27
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=23.35 E-value=58 Score=23.15 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 018789 317 DYIKDLQNQFKTLSDNRA 334 (350)
Q Consensus 317 ~YIK~LQ~qv~~Le~~~~ 334 (350)
.||..|+.+++.|+..++
T Consensus 44 ~~~~~L~~ri~~Le~~l~ 61 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENN 61 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666666554
No 28
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=21.63 E-value=63 Score=23.23 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 018789 317 DYIKDLQNQFKTLSDNRAK 335 (350)
Q Consensus 317 ~YIK~LQ~qv~~Le~~~~~ 335 (350)
.||..|+.+|+.|+..++.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~ 67 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTN 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8999999999999987754
No 29
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.11 E-value=1.6e+02 Score=23.69 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 018789 306 TNTADMLDLAVDYIKDLQNQFKTLSDNRAKC 336 (350)
Q Consensus 306 ~dKAsIL~eAI~YIK~LQ~qv~~Le~~~~~~ 336 (350)
..-..-|.++..-|..|+..+.+++.-++..
T Consensus 58 ~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 58 ASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888888999999998888776544
Done!