Query 018790
Match_columns 350
No_of_seqs 169 out of 388
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 06:06:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cf7_A Protein (transcription 99.9 4E-27 1.4E-31 185.9 5.4 73 19-91 2-75 (76)
2 1cf7_B Protein (transcription 99.2 3E-12 1E-16 105.0 3.2 69 22-93 5-92 (95)
3 1cf7_A Protein (transcription 98.6 2.4E-08 8.1E-13 78.6 4.1 55 145-204 5-75 (76)
4 1qgp_A Protein (double strande 92.6 0.085 2.9E-06 40.5 3.4 54 34-87 17-71 (77)
5 1qbj_A Protein (double-strande 91.8 0.12 4.2E-06 40.4 3.4 56 33-88 12-68 (81)
6 2heo_A Z-DNA binding protein 1 91.1 0.14 4.9E-06 38.0 3.1 53 32-85 11-63 (67)
7 2xvc_A ESCRT-III, SSO0910; cel 90.6 0.19 6.5E-06 37.8 3.3 44 34-78 13-56 (59)
8 1oyi_A Double-stranded RNA-bin 90.3 0.3 1E-05 38.8 4.4 59 28-89 14-72 (82)
9 2htj_A P fimbrial regulatory p 88.1 0.58 2E-05 35.1 4.4 43 35-79 4-46 (81)
10 3pqk_A Biofilm growth-associat 83.5 2.7 9.3E-05 32.3 6.4 64 36-102 28-93 (102)
11 2y75_A HTH-type transcriptiona 83.2 1.2 4.1E-05 36.0 4.3 59 33-91 11-71 (129)
12 3r0a_A Putative transcriptiona 83.2 0.78 2.7E-05 37.3 3.2 46 35-80 30-75 (123)
13 2qko_A Possible transcriptiona 83.0 0.68 2.3E-05 38.8 2.8 54 13-66 14-67 (215)
14 2kgf_A Capsid protein P27; ret 82.1 0.18 6.3E-06 43.7 -1.0 52 283-346 33-84 (140)
15 2kko_A Possible transcriptiona 82.1 1.2 4.3E-05 35.1 3.9 56 46-101 37-94 (108)
16 1u2w_A CADC repressor, cadmium 80.8 1.8 6E-05 35.0 4.5 65 35-101 46-112 (122)
17 3jth_A Transcription activator 80.3 2 6.8E-05 32.8 4.4 55 46-100 35-91 (98)
18 1sfx_A Conserved hypothetical 79.6 0.89 3E-05 34.2 2.2 45 35-81 24-68 (109)
19 3cuo_A Uncharacterized HTH-typ 79.6 1.4 4.6E-05 33.2 3.2 47 36-84 29-75 (99)
20 2v4x_A JSRV capsid, capsid pro 79.5 0.3 1E-05 42.4 -0.6 52 283-346 28-79 (140)
21 1y0u_A Arsenical resistance op 79.3 0.96 3.3E-05 34.7 2.3 48 35-87 35-82 (96)
22 3eco_A MEPR; mutlidrug efflux 78.1 1.3 4.6E-05 35.0 2.9 46 35-80 35-80 (139)
23 3bro_A Transcriptional regulat 77.8 1.4 4.7E-05 34.9 2.9 45 36-80 39-83 (141)
24 3qph_A TRMB, A global transcri 77.7 0.6 2.1E-05 44.9 0.8 56 47-103 32-87 (342)
25 2d1h_A ST1889, 109AA long hypo 77.0 0.94 3.2E-05 34.2 1.6 36 46-81 35-70 (109)
26 3mq0_A Transcriptional repress 76.9 2.7 9.2E-05 38.7 5.0 54 35-90 34-87 (275)
27 2oqg_A Possible transcriptiona 76.7 1.6 5.4E-05 33.9 2.9 47 35-84 25-71 (114)
28 1r1u_A CZRA, repressor protein 76.3 1.7 5.7E-05 34.1 2.9 63 36-101 31-95 (106)
29 1ku9_A Hypothetical protein MJ 75.9 5.4 0.00018 31.4 5.9 55 35-90 30-87 (152)
30 2fu4_A Ferric uptake regulatio 74.1 1.4 4.9E-05 32.7 1.9 47 35-81 21-72 (83)
31 2frh_A SARA, staphylococcal ac 74.0 2.3 7.8E-05 34.1 3.3 45 36-80 42-86 (127)
32 1r1t_A Transcriptional repress 73.3 3.1 0.0001 33.8 3.9 56 46-101 58-115 (122)
33 1sfu_A 34L protein; protein/Z- 72.8 4.4 0.00015 31.7 4.5 58 29-88 13-70 (75)
34 1j5y_A Transcriptional regulat 72.6 2.7 9.1E-05 36.4 3.6 56 34-91 24-80 (187)
35 3jw4_A Transcriptional regulat 71.6 2.1 7E-05 34.5 2.4 45 36-80 46-90 (148)
36 3oio_A Transcriptional regulat 70.3 3.5 0.00012 32.3 3.5 44 31-74 7-50 (113)
37 3oou_A LIN2118 protein; protei 70.3 2.7 9.2E-05 32.7 2.8 45 32-76 6-50 (108)
38 3dcf_A Transcriptional regulat 70.2 2.3 7.8E-05 35.0 2.5 44 22-65 26-69 (218)
39 1on2_A Transcriptional regulat 70.0 3.5 0.00012 33.2 3.5 36 47-82 22-57 (142)
40 3rkx_A Biotin-[acetyl-COA-carb 69.9 2.9 0.0001 39.8 3.5 57 34-90 6-63 (323)
41 2dk5_A DNA-directed RNA polyme 69.8 3 0.0001 33.0 3.0 56 25-80 14-69 (91)
42 2jt1_A PEFI protein; solution 69.2 3.4 0.00011 31.9 3.0 36 45-80 22-57 (77)
43 3tqn_A Transcriptional regulat 68.5 6 0.0002 31.6 4.6 52 32-83 14-69 (113)
44 2lkp_A Transcriptional regulat 67.8 5 0.00017 31.5 3.9 35 47-81 45-79 (119)
45 3mkl_A HTH-type transcriptiona 67.8 3.5 0.00012 32.7 3.1 39 32-70 8-46 (120)
46 3deu_A Transcriptional regulat 67.3 6 0.00021 32.9 4.5 35 47-81 68-102 (166)
47 1wi9_A Protein C20ORF116 homol 67.2 8 0.00027 30.1 4.8 58 32-91 8-67 (72)
48 2wte_A CSA3; antiviral protein 66.9 3.6 0.00012 37.8 3.3 57 31-89 152-208 (244)
49 2jsc_A Transcriptional regulat 66.7 2.3 7.8E-05 34.1 1.7 44 35-81 25-68 (118)
50 3mn2_A Probable ARAC family tr 66.7 3.6 0.00012 31.9 2.8 43 32-74 3-45 (108)
51 2xrn_A HTH-type transcriptiona 66.3 4.7 0.00016 36.2 3.9 54 35-90 10-64 (241)
52 3tgn_A ADC operon repressor AD 66.2 3.3 0.00011 32.9 2.6 45 34-81 41-85 (146)
53 2pg4_A Uncharacterized protein 65.6 3.6 0.00012 31.3 2.6 51 28-79 10-63 (95)
54 1ylf_A RRF2 family protein; st 65.5 4.6 0.00016 33.8 3.4 48 33-80 16-63 (149)
55 3g3z_A NMB1585, transcriptiona 65.0 3.1 0.00011 33.2 2.2 33 48-80 46-78 (145)
56 1r7j_A Conserved hypothetical 64.9 5.9 0.0002 31.2 3.8 56 27-87 4-59 (95)
57 3bja_A Transcriptional regulat 64.8 4.6 0.00016 31.6 3.2 43 36-80 38-80 (139)
58 1ub9_A Hypothetical protein PH 64.5 3.5 0.00012 30.8 2.3 44 36-81 21-64 (100)
59 3i53_A O-methyltransferase; CO 64.2 2.5 8.5E-05 38.9 1.7 50 36-88 30-79 (332)
60 3gwz_A MMCR; methyltransferase 64.0 3 0.0001 39.3 2.3 42 45-86 69-111 (369)
61 1mkm_A ICLR transcriptional re 63.7 6 0.00021 35.5 4.1 54 35-90 12-65 (249)
62 3u2r_A Regulatory protein MARR 63.6 3.2 0.00011 34.2 2.1 44 37-80 52-95 (168)
63 2cfx_A HTH-type transcriptiona 63.5 4.5 0.00015 33.2 2.9 46 32-79 6-51 (144)
64 2fbi_A Probable transcriptiona 63.3 3.5 0.00012 32.4 2.2 34 47-80 50-83 (142)
65 3k69_A Putative transcription 63.2 7.9 0.00027 33.2 4.6 49 32-80 13-61 (162)
66 2ip2_A Probable phenazine-spec 62.9 3.1 0.0001 38.1 2.0 42 46-87 40-81 (334)
67 3nrv_A Putative transcriptiona 62.7 4.4 0.00015 32.3 2.7 44 35-80 44-87 (148)
68 2qww_A Transcriptional regulat 62.7 4.6 0.00016 32.4 2.9 42 36-79 46-87 (154)
69 1i1g_A Transcriptional regulat 62.5 5.8 0.0002 31.9 3.4 45 34-80 7-51 (141)
70 1bl0_A Protein (multiple antib 62.5 4.6 0.00016 32.5 2.8 43 31-73 11-53 (129)
71 4b8x_A SCO5413, possible MARR- 62.5 3.7 0.00013 33.7 2.3 44 37-80 41-84 (147)
72 3lsg_A Two-component response 62.4 4.8 0.00016 30.9 2.8 44 32-75 3-47 (103)
73 2x4h_A Hypothetical protein SS 62.4 4.8 0.00017 32.2 2.9 37 45-81 29-65 (139)
74 2o0y_A Transcriptional regulat 61.7 3.3 0.00011 37.6 2.0 43 46-89 37-79 (260)
75 3r4k_A Transcriptional regulat 61.6 3.6 0.00012 37.4 2.2 55 36-91 11-65 (260)
76 3bru_A Regulatory protein, TET 61.5 4.8 0.00016 33.3 2.8 42 25-66 28-69 (222)
77 3lst_A CALO1 methyltransferase 61.3 3.1 0.0001 38.8 1.7 43 45-88 53-95 (348)
78 2nnn_A Probable transcriptiona 61.3 3.6 0.00012 32.2 1.9 34 47-80 52-85 (140)
79 3ech_A MEXR, multidrug resista 61.1 5.4 0.00018 31.7 3.0 43 36-80 42-84 (142)
80 2gxg_A 146AA long hypothetical 61.1 4.6 0.00016 32.0 2.5 36 45-80 48-83 (146)
81 2hzt_A Putative HTH-type trans 61.1 4.8 0.00016 31.6 2.6 36 46-81 26-62 (107)
82 1p7n_A GAG polyprotein capsid 60.9 2.1 7.3E-05 38.4 0.5 53 283-347 57-109 (176)
83 2k9s_A Arabinose operon regula 60.9 6.7 0.00023 30.3 3.4 43 32-74 4-47 (107)
84 1q1h_A TFE, transcription fact 60.8 4.6 0.00016 31.5 2.4 34 47-80 33-66 (110)
85 2bv6_A MGRA, HTH-type transcri 60.8 4.6 0.00016 32.0 2.5 35 47-81 51-85 (142)
86 2r3s_A Uncharacterized protein 60.6 3 0.0001 38.0 1.5 40 46-86 38-77 (335)
87 2p5v_A Transcriptional regulat 60.5 5 0.00017 33.5 2.8 49 29-79 8-56 (162)
88 2ek5_A Predicted transcription 60.2 8.9 0.0003 31.6 4.2 40 43-82 23-63 (129)
89 3nqo_A MARR-family transcripti 60.0 4.6 0.00016 34.5 2.5 45 36-80 46-90 (189)
90 1xn7_A Hypothetical protein YH 60.0 5.6 0.00019 30.7 2.7 45 34-80 5-49 (78)
91 3boq_A Transcriptional regulat 59.9 7.8 0.00027 31.3 3.8 35 46-80 61-95 (160)
92 2vn2_A DNAD, chromosome replic 59.5 4.8 0.00016 33.0 2.4 38 44-81 48-85 (128)
93 2cg4_A Regulatory protein ASNC 59.2 5.3 0.00018 32.9 2.7 48 30-79 7-54 (152)
94 2ia0_A Putative HTH-type trans 59.2 5.5 0.00019 34.1 2.8 52 26-79 12-63 (171)
95 3f3x_A Transcriptional regulat 59.1 4.5 0.00015 32.2 2.1 42 36-80 42-83 (144)
96 3pfi_A Holliday junction ATP-d 58.9 5.4 0.00018 36.4 2.9 55 29-83 261-316 (338)
97 3fm5_A Transcriptional regulat 58.8 4.5 0.00015 32.5 2.1 35 47-81 54-88 (150)
98 2dbb_A Putative HTH-type trans 58.8 5.1 0.00017 32.9 2.5 49 29-79 7-55 (151)
99 1v4r_A Transcriptional repress 58.6 8.9 0.0003 29.6 3.8 54 29-82 13-70 (102)
100 2cyy_A Putative HTH-type trans 58.1 6.4 0.00022 32.4 3.0 49 29-79 5-53 (151)
101 2k02_A Ferrous iron transport 58.1 5.9 0.0002 31.4 2.6 46 34-81 5-50 (87)
102 3oop_A LIN2960 protein; protei 57.9 4.5 0.00015 32.2 1.9 35 46-80 50-84 (143)
103 1qzz_A RDMB, aclacinomycin-10- 57.8 4.3 0.00015 37.6 2.1 42 46-87 48-91 (374)
104 2fbk_A Transcriptional regulat 57.7 7.4 0.00025 32.6 3.4 34 47-80 86-119 (181)
105 2w25_A Probable transcriptiona 57.4 6.7 0.00023 32.2 3.0 49 29-79 5-53 (150)
106 2y2z_A SIM16, SIMR, putative r 57.3 7.1 0.00024 35.3 3.4 47 20-66 20-66 (267)
107 3bpv_A Transcriptional regulat 57.2 5.9 0.0002 31.0 2.5 43 36-80 34-76 (138)
108 3f6o_A Probable transcriptiona 57.1 5.5 0.00019 31.7 2.4 50 35-87 22-71 (118)
109 2g7u_A Transcriptional regulat 57.0 5 0.00017 36.3 2.3 51 36-89 19-69 (257)
110 3by6_A Predicted transcription 57.0 12 0.00042 30.4 4.5 52 32-83 16-71 (126)
111 2ia2_A Putative transcriptiona 57.0 5.5 0.00019 36.3 2.6 49 36-86 26-74 (265)
112 3cjn_A Transcriptional regulat 57.0 6.6 0.00023 31.8 2.9 35 46-80 65-99 (162)
113 2eth_A Transcriptional regulat 57.0 4.9 0.00017 32.5 2.0 34 47-80 58-91 (154)
114 2pn6_A ST1022, 150AA long hypo 56.9 6.4 0.00022 32.2 2.8 44 34-79 6-49 (150)
115 2fa5_A Transcriptional regulat 56.5 6 0.00021 32.0 2.5 36 46-81 62-97 (162)
116 3bj6_A Transcriptional regulat 56.4 6.4 0.00022 31.4 2.6 34 47-80 54-87 (152)
117 2a61_A Transcriptional regulat 56.1 5.5 0.00019 31.4 2.2 34 47-80 47-80 (145)
118 3bdd_A Regulatory protein MARR 56.1 5.4 0.00018 31.3 2.1 35 47-81 45-79 (142)
119 1lj9_A Transcriptional regulat 55.7 6.7 0.00023 31.0 2.6 34 47-80 43-76 (144)
120 2fsw_A PG_0823 protein; alpha- 55.7 6.9 0.00024 30.5 2.7 37 45-81 36-73 (107)
121 2hr3_A Probable transcriptiona 55.5 5.7 0.0002 31.5 2.2 46 34-80 38-83 (147)
122 4hbl_A Transcriptional regulat 55.3 7.2 0.00025 31.4 2.8 35 46-80 54-88 (149)
123 3ihu_A Transcriptional regulat 54.6 16 0.00053 31.9 5.1 56 26-81 14-73 (222)
124 1s3j_A YUSO protein; structura 53.7 6.3 0.00022 31.5 2.2 34 47-80 51-84 (155)
125 1xmk_A Double-stranded RNA-spe 53.4 17 0.00058 28.2 4.5 56 31-88 11-67 (79)
126 1z7u_A Hypothetical protein EF 53.1 4.5 0.00016 32.0 1.2 35 47-81 35-70 (112)
127 3k0l_A Repressor protein; heli 52.9 8.8 0.0003 31.3 3.0 34 47-80 60-93 (162)
128 4ham_A LMO2241 protein; struct 52.9 15 0.00051 30.0 4.4 55 32-86 19-78 (134)
129 1p6r_A Penicillinase repressor 52.8 7.9 0.00027 28.6 2.5 50 30-81 8-61 (82)
130 1z91_A Organic hydroperoxide r 52.6 6.3 0.00022 31.2 2.0 35 47-81 54-88 (147)
131 2pex_A Transcriptional regulat 52.2 8.9 0.0003 30.7 2.9 36 46-81 60-95 (153)
132 3c7j_A Transcriptional regulat 52.1 6.3 0.00022 35.3 2.1 50 32-81 31-83 (237)
133 2fbh_A Transcriptional regulat 52.1 5.7 0.00019 31.3 1.6 36 46-81 51-86 (146)
134 3cdh_A Transcriptional regulat 51.8 10 0.00035 30.5 3.2 36 46-81 56-91 (155)
135 1jgs_A Multiple antibiotic res 51.8 6.8 0.00023 30.7 2.1 34 47-80 48-81 (138)
136 2h09_A Transcriptional regulat 51.4 13 0.00044 30.3 3.8 36 47-82 54-89 (155)
137 2hs5_A Putative transcriptiona 51.4 17 0.00057 32.4 4.8 40 43-82 47-86 (239)
138 3hsr_A HTH-type transcriptiona 50.9 6.8 0.00023 31.2 1.9 36 45-80 48-83 (140)
139 2rdp_A Putative transcriptiona 50.9 7 0.00024 31.1 2.0 34 47-80 56-89 (150)
140 1x19_A CRTF-related protein; m 50.7 6.3 0.00022 36.6 2.0 41 46-87 63-103 (359)
141 3t8r_A Staphylococcus aureus C 50.7 14 0.00048 30.8 3.9 49 32-80 12-61 (143)
142 2b0l_A GTP-sensing transcripti 50.6 6.9 0.00024 31.1 1.9 38 44-81 39-77 (102)
143 1tw3_A COMT, carminomycin 4-O- 50.3 6.2 0.00021 36.5 1.8 42 46-87 51-92 (360)
144 1tbx_A ORF F-93, hypothetical 50.2 8.2 0.00028 29.2 2.2 44 36-81 13-60 (99)
145 2nyx_A Probable transcriptiona 49.9 7.5 0.00026 32.1 2.1 34 47-80 59-92 (168)
146 3e6m_A MARR family transcripti 49.8 7.9 0.00027 31.6 2.2 36 46-81 66-101 (161)
147 3s2w_A Transcriptional regulat 49.6 9.3 0.00032 31.0 2.6 35 46-80 63-97 (159)
148 2rae_A Transcriptional regulat 49.4 10 0.00036 30.9 2.9 46 21-66 11-56 (207)
149 2e1c_A Putative HTH-type trans 49.0 11 0.00036 32.4 3.0 49 29-79 25-73 (171)
150 3neu_A LIN1836 protein; struct 49.0 19 0.00064 29.2 4.3 51 32-82 18-72 (125)
151 4e17_B Catenin alpha-1; four h 48.8 7.1 0.00024 27.2 1.5 12 322-333 25-36 (40)
152 3sxy_A Transcriptional regulat 47.3 10 0.00036 32.9 2.7 40 43-82 31-70 (218)
153 3k2z_A LEXA repressor; winged 47.2 8.2 0.00028 33.4 2.0 37 45-81 22-58 (196)
154 3f6v_A Possible transcriptiona 47.1 8.2 0.00028 32.6 2.0 54 34-90 61-114 (151)
155 3mcz_A O-methyltransferase; ad 46.0 8.5 0.00029 35.4 2.0 39 47-86 56-94 (352)
156 3qqa_A CMER; alpha-helical, he 45.9 5.8 0.0002 32.6 0.8 49 17-65 9-57 (216)
157 3dp7_A SAM-dependent methyltra 45.8 8.8 0.0003 36.0 2.1 40 46-86 49-88 (363)
158 1yyv_A Putative transcriptiona 45.5 9.8 0.00034 31.3 2.1 54 25-81 25-83 (131)
159 3bni_A Putative TETR-family tr 45.4 6.5 0.00022 33.4 1.0 40 27-66 43-82 (229)
160 2v79_A DNA replication protein 45.1 13 0.00045 31.1 2.9 43 38-80 42-84 (135)
161 1z4h_A TORI, TOR inhibition pr 44.9 8.8 0.0003 27.9 1.6 39 45-88 8-49 (66)
162 3gbg_A TCP pilus virulence reg 44.8 13 0.00044 32.9 3.0 38 32-69 170-207 (276)
163 3b73_A PHIH1 repressor-like pr 44.1 12 0.00039 30.7 2.3 53 29-83 11-65 (111)
164 2iu5_A DHAS, YCEG, HTH-type dh 43.6 17 0.00058 29.7 3.3 40 26-65 12-51 (195)
165 2qvo_A Uncharacterized protein 43.5 9.9 0.00034 28.9 1.7 35 44-78 27-61 (95)
166 3df8_A Possible HXLR family tr 43.3 12 0.00039 29.8 2.2 56 26-82 18-78 (111)
167 3kp7_A Transcriptional regulat 43.2 9.8 0.00033 30.5 1.7 34 46-79 50-83 (151)
168 2hxo_A Putative TETR-family tr 42.0 22 0.00075 31.1 4.0 46 21-66 10-55 (237)
169 2f2e_A PA1607; transcription f 42.0 9.1 0.00031 31.9 1.4 54 25-81 14-71 (146)
170 2qtq_A Transcriptional regulat 41.7 17 0.00059 29.5 3.0 44 23-66 12-55 (213)
171 1hsj_A Fusion protein consisti 41.7 13 0.00044 35.7 2.6 45 36-80 409-453 (487)
172 3him_A Probable transcriptiona 41.6 14 0.00047 29.9 2.4 42 24-65 13-54 (211)
173 4a5n_A Uncharacterized HTH-typ 41.5 15 0.0005 30.7 2.6 59 45-104 37-104 (131)
174 3ppb_A Putative TETR family tr 41.3 17 0.00059 28.9 3.0 42 24-65 6-47 (195)
175 2di3_A Bacterial regulatory pr 41.3 28 0.00097 30.5 4.6 37 43-79 23-60 (239)
176 2kfs_A Conserved hypothetical 40.7 10 0.00036 33.0 1.6 58 45-105 29-95 (148)
177 1hw1_A FADR, fatty acid metabo 40.7 22 0.00076 31.0 3.8 59 28-86 7-71 (239)
178 1tc3_C Protein (TC3 transposas 40.6 19 0.00064 22.8 2.5 35 35-73 13-47 (51)
179 1fp2_A Isoflavone O-methyltran 40.5 11 0.00037 35.0 1.8 42 46-87 50-96 (352)
180 3kkc_A TETR family transcripti 40.4 8 0.00028 30.8 0.8 42 24-65 9-50 (177)
181 2dg7_A Putative transcriptiona 40.0 20 0.00067 29.1 3.2 43 25-67 5-47 (195)
182 1p4x_A Staphylococcal accessor 39.9 17 0.00057 33.3 2.9 44 37-80 164-207 (250)
183 3kz9_A SMCR; transcriptional r 39.9 19 0.00064 29.0 3.0 42 25-66 15-56 (206)
184 3q0w_A HTH-type transcriptiona 39.1 12 0.00042 31.8 1.8 41 26-66 43-83 (236)
185 1bia_A BIRA bifunctional prote 39.0 18 0.00062 34.0 3.1 54 34-89 8-62 (321)
186 1sgm_A Putative HTH-type trans 38.7 19 0.00065 28.6 2.8 44 25-68 4-47 (191)
187 3ic7_A Putative transcriptiona 38.6 10 0.00035 30.9 1.2 51 32-82 16-70 (126)
188 1xd7_A YWNA; structural genomi 38.5 30 0.001 28.6 4.1 48 31-80 9-56 (145)
189 2np3_A Putative TETR-family re 38.4 7.2 0.00025 32.3 0.2 40 27-66 30-69 (212)
190 2wv0_A YVOA, HTH-type transcri 38.3 32 0.0011 30.8 4.5 55 32-86 15-74 (243)
191 1zk8_A Transcriptional regulat 38.2 17 0.00059 29.1 2.5 43 24-66 5-47 (183)
192 3edp_A LIN2111 protein; APC883 37.7 28 0.00096 31.1 4.1 56 31-86 13-73 (236)
193 1okr_A MECI, methicillin resis 37.7 14 0.00048 28.7 1.8 55 34-90 13-72 (123)
194 3on2_A Probable transcriptiona 37.7 29 0.00099 27.7 3.8 43 24-66 9-51 (199)
195 3aqt_A Bacterial regulatory pr 37.6 9 0.00031 33.0 0.7 41 26-66 45-85 (245)
196 2hku_A A putative transcriptio 36.8 15 0.00053 30.4 2.0 45 20-65 13-57 (215)
197 3fiw_A Putative TETR-family tr 36.5 18 0.00061 31.0 2.5 46 21-66 19-64 (211)
198 3qkx_A Uncharacterized HTH-typ 36.3 15 0.00051 29.2 1.8 40 26-65 7-46 (188)
199 2pjp_A Selenocysteine-specific 36.0 29 0.00099 27.9 3.5 55 29-85 64-118 (121)
200 2g7l_A TETR-family transcripti 35.9 21 0.00073 31.5 2.9 45 22-66 14-58 (243)
201 1y6u_A XIS, excisionase from t 35.0 15 0.00051 27.7 1.5 38 45-90 14-51 (70)
202 3lwf_A LIN1550 protein, putati 34.7 28 0.00095 29.8 3.4 49 32-80 28-77 (159)
203 3i4p_A Transcriptional regulat 34.2 22 0.00077 29.7 2.7 47 32-80 4-50 (162)
204 1jko_C HIN recombinase, DNA-in 34.1 14 0.00049 23.8 1.2 22 48-69 22-43 (52)
205 3col_A Putative transcription 33.9 18 0.00062 28.8 2.0 43 24-66 7-49 (196)
206 3o60_A LIN0861 protein; PSI, M 33.6 15 0.00052 30.7 1.5 45 21-65 13-58 (185)
207 3he0_A Transcriptional regulat 33.5 23 0.00079 28.4 2.5 42 24-65 8-49 (196)
208 2ou2_A Histone acetyltransfera 33.3 29 0.00099 33.1 3.5 51 27-80 181-242 (280)
209 4e18_B Catenin alpha-1; four h 33.2 17 0.00057 27.3 1.5 12 322-333 44-55 (59)
210 2fxa_A Protease production reg 33.0 19 0.00065 31.3 2.1 35 47-81 62-96 (207)
211 3cwr_A Transcriptional regulat 32.7 16 0.00054 29.5 1.4 41 26-66 16-56 (208)
212 3mvp_A TETR/ACRR transcription 32.5 16 0.00056 29.7 1.5 42 25-66 24-65 (217)
213 2hxi_A Putative transcriptiona 32.3 28 0.00095 30.6 3.1 44 22-65 24-67 (241)
214 2o03_A Probable zinc uptake re 32.3 30 0.001 28.1 3.0 45 36-81 16-65 (131)
215 4fx0_A Probable transcriptiona 32.3 24 0.00082 28.9 2.5 35 46-80 51-85 (148)
216 2g9w_A Conserved hypothetical 32.0 28 0.00097 28.1 2.9 47 34-81 12-62 (138)
217 3dkw_A DNR protein; CRP-FNR, H 32.0 33 0.0011 28.6 3.4 38 47-85 178-215 (227)
218 2yve_A Transcriptional regulat 31.9 32 0.0011 27.9 3.2 37 30-66 7-43 (185)
219 3on4_A Transcriptional regulat 31.9 25 0.00084 28.0 2.4 43 24-66 7-49 (191)
220 2iai_A Putative transcriptiona 31.8 18 0.00061 30.6 1.7 45 22-66 25-69 (230)
221 3g1o_A Transcriptional regulat 31.5 21 0.00073 30.6 2.1 40 27-66 43-82 (255)
222 2pjp_A Selenocysteine-specific 31.5 17 0.00057 29.3 1.3 53 32-87 8-60 (121)
223 1mzb_A Ferric uptake regulatio 31.1 30 0.001 28.2 2.9 46 36-81 23-73 (136)
224 1zg3_A Isoflavanone 4'-O-methy 31.1 16 0.00054 34.0 1.3 43 37-80 36-81 (358)
225 1uly_A Hypothetical protein PH 31.0 27 0.00092 30.6 2.7 44 34-80 23-66 (192)
226 1d5y_A ROB transcription facto 30.9 22 0.00075 31.6 2.1 42 32-73 4-45 (292)
227 1lva_A Selenocysteine-specific 30.8 37 0.0013 30.8 3.7 72 28-101 138-209 (258)
228 1fp1_D Isoliquiritigenin 2'-O- 30.8 16 0.00056 34.2 1.3 34 47-80 62-101 (372)
229 3vp5_A Transcriptional regulat 30.7 25 0.00085 28.8 2.3 40 26-65 11-50 (189)
230 3f8m_A GNTR-family protein tra 30.7 22 0.00074 32.1 2.1 44 43-86 31-75 (248)
231 3gzi_A Transcriptional regulat 30.0 25 0.00084 28.8 2.2 41 26-66 16-56 (218)
232 3e6c_C CPRK, cyclic nucleotide 29.9 29 0.001 29.9 2.7 50 47-101 177-226 (250)
233 2qib_A TETR-family transcripti 29.9 20 0.00068 30.4 1.6 41 25-65 11-51 (231)
234 2yu3_A DNA-directed RNA polyme 29.8 98 0.0034 24.7 5.6 55 26-80 32-86 (95)
235 3lwj_A Putative TETR-family tr 29.7 17 0.00057 29.5 1.1 43 24-66 9-51 (202)
236 3nrg_A TETR family transcripti 28.8 32 0.0011 28.0 2.7 42 25-66 11-52 (217)
237 2dg8_A Putative TETR-family tr 28.7 28 0.00096 28.3 2.3 40 26-65 8-47 (193)
238 3knw_A Putative transcriptiona 28.6 20 0.00069 29.1 1.4 44 23-66 10-53 (212)
239 3egq_A TETR family transcripti 28.5 29 0.00099 27.4 2.3 36 31-66 8-43 (170)
240 3c07_A Putative TETR-family tr 28.5 20 0.00068 31.9 1.4 45 22-66 36-80 (273)
241 2k4b_A Transcriptional regulat 28.3 22 0.00076 28.2 1.5 44 36-81 40-87 (99)
242 2guh_A Putative TETR-family tr 28.0 22 0.00077 30.0 1.6 44 25-68 37-80 (214)
243 3ccy_A Putative TETR-family tr 27.8 51 0.0017 26.8 3.8 43 24-66 11-53 (203)
244 2zkz_A Transcriptional repress 27.7 29 0.00098 26.7 2.1 33 47-80 41-73 (99)
245 2g7g_A RHA04620, putative tran 27.7 29 0.001 29.5 2.3 41 24-66 8-48 (213)
246 1p4x_A Staphylococcal accessor 27.7 42 0.0014 30.5 3.5 44 37-80 40-83 (250)
247 3p9c_A Caffeic acid O-methyltr 27.5 31 0.001 32.5 2.6 45 36-80 45-94 (364)
248 2q24_A Putative TETR family tr 27.5 32 0.0011 27.8 2.5 41 24-65 12-52 (194)
249 1ft9_A Carbon monoxide oxidati 27.0 51 0.0018 27.7 3.7 37 47-83 163-199 (222)
250 2ozu_A Histone acetyltransfera 26.9 42 0.0014 32.2 3.4 50 27-79 188-243 (284)
251 2qc0_A Uncharacterized protein 26.6 35 0.0012 32.8 2.9 47 36-84 302-348 (373)
252 3g7r_A Putative transcriptiona 26.5 30 0.001 28.9 2.2 45 22-66 30-74 (221)
253 3bwg_A Uncharacterized HTH-typ 26.3 52 0.0018 29.3 3.8 54 32-85 10-68 (239)
254 3rd3_A Probable transcriptiona 26.3 32 0.0011 27.4 2.2 43 24-66 7-49 (197)
255 3f1b_A TETR-like transcription 26.3 23 0.00078 28.5 1.3 39 28-66 15-53 (203)
256 3bqz_B HTH-type transcriptiona 26.3 29 0.001 27.7 1.9 36 31-66 6-41 (194)
257 4ev0_A Transcription regulator 26.3 50 0.0017 27.3 3.5 36 46-81 162-197 (216)
258 2pq8_A Probable histone acetyl 26.2 26 0.00087 33.5 1.8 50 27-80 183-238 (278)
259 4aik_A Transcriptional regulat 26.1 39 0.0013 27.7 2.7 34 47-80 46-79 (151)
260 3eet_A Putative GNTR-family tr 26.0 56 0.0019 29.9 4.0 55 31-85 33-92 (272)
261 4aci_A HTH-type transcriptiona 25.7 16 0.00055 29.3 0.3 45 22-66 9-53 (191)
262 2elh_A CG11849-PA, LD40883P; s 24.9 72 0.0025 23.9 3.9 43 34-80 29-71 (87)
263 3nxc_A HTH-type protein SLMA; 24.9 40 0.0014 27.2 2.6 43 24-66 21-64 (212)
264 1pb6_A Hypothetical transcript 24.5 23 0.0008 28.7 1.0 42 25-66 16-57 (212)
265 2g7s_A Transcriptional regulat 24.5 21 0.00072 28.3 0.8 39 28-66 9-47 (194)
266 3qbm_A TETR transcriptional re 24.4 20 0.00067 28.8 0.6 39 28-66 8-46 (199)
267 3s5r_A Transcriptional regulat 24.3 34 0.0011 27.8 2.0 43 24-66 7-49 (216)
268 2opt_A Actii protein; helical 24.3 41 0.0014 29.5 2.7 43 24-66 3-45 (234)
269 3hrs_A Metalloregulator SCAR; 23.9 43 0.0015 29.4 2.7 39 44-82 17-55 (214)
270 3b02_A Transcriptional regulat 23.5 37 0.0013 28.0 2.1 39 47-86 139-177 (195)
271 3dew_A Transcriptional regulat 23.4 36 0.0012 27.2 1.9 40 27-66 8-47 (206)
272 2zcx_A SCO7815, TETR-family tr 23.3 31 0.0011 29.6 1.6 43 24-66 20-62 (231)
273 3lhq_A Acrab operon repressor 23.3 25 0.00087 28.4 1.0 41 26-66 13-53 (220)
274 3gpv_A Transcriptional regulat 22.9 28 0.00097 29.2 1.3 54 47-104 16-73 (148)
275 3f0c_A TETR-molecule A, transc 22.9 44 0.0015 27.2 2.4 44 23-66 7-50 (216)
276 1sd4_A Penicillinase repressor 22.8 41 0.0014 26.1 2.1 46 34-81 13-62 (126)
277 3u1d_A Uncharacterized protein 22.7 53 0.0018 28.4 3.0 45 36-80 34-79 (151)
278 2id3_A Putative transcriptiona 22.4 17 0.00059 30.6 -0.2 42 25-66 38-79 (225)
279 2zcw_A TTHA1359, transcription 22.3 44 0.0015 27.6 2.4 39 47-86 146-184 (202)
280 3ni7_A Bacterial regulatory pr 22.3 44 0.0015 28.3 2.4 42 25-66 5-46 (213)
281 3mwm_A ZUR, putative metal upt 22.0 58 0.002 26.7 3.0 45 36-81 19-68 (139)
282 2v57_A TETR family transcripti 21.9 42 0.0014 26.8 2.1 41 24-66 11-51 (190)
283 2fe3_A Peroxide operon regulat 21.8 64 0.0022 26.6 3.2 46 36-82 27-77 (145)
284 3to7_A Histone acetyltransfera 21.8 97 0.0033 29.5 4.8 58 26-87 182-245 (276)
285 2p4w_A Transcriptional regulat 21.8 51 0.0017 29.1 2.8 44 35-81 19-62 (202)
286 3e97_A Transcriptional regulat 21.7 71 0.0024 26.8 3.6 35 47-81 175-209 (231)
287 3ryp_A Catabolite gene activat 21.6 92 0.0031 25.5 4.2 36 47-82 167-202 (210)
288 3kcc_A Catabolite gene activat 21.6 94 0.0032 27.1 4.5 36 47-82 217-252 (260)
289 2zb9_A Putative transcriptiona 21.4 25 0.00086 28.9 0.6 43 24-66 20-62 (214)
290 1z0x_A Transcriptional regulat 21.4 59 0.002 27.7 3.0 40 27-66 5-45 (220)
291 4a6d_A Hydroxyindole O-methylt 21.3 33 0.0011 32.1 1.5 42 38-80 35-76 (353)
292 2of7_A Putative TETR-family tr 21.3 19 0.00066 31.2 -0.1 39 28-66 49-87 (260)
293 3lsj_A DEST; transcriptional r 21.2 26 0.00088 28.9 0.7 42 25-66 9-51 (220)
294 3dv8_A Transcriptional regulat 20.9 59 0.002 26.9 2.9 39 47-86 169-207 (220)
295 4fe7_A Xylose operon regulator 20.5 36 0.0012 32.0 1.6 42 31-72 305-346 (412)
296 2gqq_A Leucine-responsive regu 20.5 22 0.00075 29.6 0.1 48 30-79 12-59 (163)
297 2oz6_A Virulence factor regula 20.3 37 0.0013 27.9 1.5 35 47-81 164-198 (207)
298 2v7f_A RPS19, RPS19E SSU ribos 20.2 50 0.0017 28.3 2.3 44 36-82 59-116 (150)
299 2bgc_A PRFA; bacterial infecti 20.2 38 0.0013 28.9 1.6 36 47-82 169-205 (238)
300 2ibd_A Possible transcriptiona 20.0 32 0.0011 28.2 1.0 37 29-65 16-52 (204)
No 1
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.93 E-value=4e-27 Score=185.86 Aligned_cols=73 Identities=42% Similarity=0.697 Sum_probs=65.5
Q ss_pred CCCCCCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCC-ceeeehhhHHHHhhhhhhhhcCCCceEEecCC
Q 018790 19 KQFYSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGV-ERRRIYDVVNILESIGVVARQAKNLYSWQGFD 91 (350)
Q Consensus 19 ~~~~sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV-~RRRIYDIvNVLEslGli~K~~KN~y~W~G~~ 91 (350)
+...+|+++||++||++||++|.+.+++.|+|+++|++|+| +|||||||+|||||||||+|.+||.|+|+|++
T Consensus 2 ~~~~~R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~K~~k~~~~W~G~~ 75 (76)
T 1cf7_A 2 PGTPSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIEKKSKNSIQWKGVG 75 (76)
T ss_dssp ----CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEEEEETTEEEEC---
T ss_pred CCCCCCccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhcceeecCCCcEEEeCCC
Confidence 35789999999999999999999999999999999999999 99999999999999999999999999999986
No 2
>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=99.23 E-value=3e-12 Score=105.03 Aligned_cols=69 Identities=23% Similarity=0.437 Sum_probs=47.4
Q ss_pred CCCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHh-------------------CCceeeehhhHHHHhhhhhhhhcCC
Q 018790 22 YSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRL-------------------GVERRRIYDVVNILESIGVVARQAK 82 (350)
Q Consensus 22 ~sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~L-------------------gV~RRRIYDIvNVLEslGli~K~~K 82 (350)
..++.+.|..+..+..+.+... ...+..++|.+| ...||||||++|||+++|||+| .+
T Consensus 5 ~~k~~~GLr~fS~kVcekVk~k--~~Tty~eVAdeLV~e~~~~~~~~~~~~~~d~~~~rRRvYD~~NVl~a~gii~K-~k 81 (95)
T 1cf7_B 5 GDKNGKGLRHFSMKVCEKVQRK--GTTSYNEVADELVSEFTNSNNHLAADSAYDQKNIRRRVYDALNVLMAMNIISK-EK 81 (95)
T ss_dssp ----CCHHHHHHHHHHHHHHHH--SEECHHHHHHHHHHHHHTCTTCCGGGSHHHHHHHHHHHHHHHHHHHHTTSBCC-CS
T ss_pred ccccCccHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhcccccCccchhcccccchhhHHHHHHHHHHhcceec-CC
Confidence 3444556666666666666553 234555555554 3479999999999999999999 79
Q ss_pred CceEEecCCCh
Q 018790 83 NLYSWQGFDAI 93 (350)
Q Consensus 83 N~y~W~G~~nI 93 (350)
+.|.|+|+++-
T Consensus 82 ~~i~W~g~~~~ 92 (95)
T 1cf7_B 82 KEIKWIGLPTN 92 (95)
T ss_dssp SCEEBCCCC--
T ss_pred CEEEEecCCcc
Confidence 99999998753
No 3
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=98.61 E-value=2.4e-08 Score=78.59 Aligned_cols=55 Identities=35% Similarity=0.431 Sum_probs=44.8
Q ss_pred cccccchHHHHHHHHHHHHhcCCCceecHHHHHHHHcCCCCCCccccc----------------CCCCceeeccCC
Q 018790 145 ESKREKSLWLLTQNFVKLFLCSDVDMITLDSAAMALLGDSNNSTAMRK----------------SRKPAFRWLGWK 204 (350)
Q Consensus 145 d~rkeKSL~~LSQkFVmLFL~s~~~~ISLdeAAkiL~gd~~~~~~~r~----------------~rKPaF~WlG~~ 204 (350)
.+|+++||+.||++||.||...+..+|+|++||..|... ..|| ..|+.|+|+|..
T Consensus 5 ~~R~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v~-----~kRRiYDI~NVLe~igli~K~~k~~~~W~G~~ 75 (76)
T 1cf7_A 5 PSRHEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAVR-----QKRRIYDITNVLEGIGLIEKKSKNSIQWKGVG 75 (76)
T ss_dssp -CTTTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTTC-----CTHHHHHHHHHHHHHTSEEEEETTEEEEC---
T ss_pred CCCccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCCc-----cceehhhHHHHHhHhcceeecCCCcEEEeCCC
Confidence 469999999999999999999999999999999999651 1233 679999999964
No 4
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=92.65 E-value=0.085 Score=40.54 Aligned_cols=54 Identities=22% Similarity=0.389 Sum_probs=46.2
Q ss_pred HHHHHHHhhCC-CceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEE
Q 018790 34 SKFLKLYNRDG-VESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSW 87 (350)
Q Consensus 34 ~kFl~l~~~~~-~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W 87 (350)
++.|.++...+ +..++..++|.+|||.++-|.-.+.-||.-|+|.+.+.+.=.|
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W 71 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLW 71 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCce
Confidence 66777777655 5679999999999999999999999999999999986555566
No 5
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=91.76 E-value=0.12 Score=40.39 Aligned_cols=56 Identities=20% Similarity=0.322 Sum_probs=46.4
Q ss_pred HHHHHHHHhhC-CCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEEe
Q 018790 33 CSKFLKLYNRD-GVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQ 88 (350)
Q Consensus 33 ~~kFl~l~~~~-~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W~ 88 (350)
-++.|+++... |+..++..++|.+|||.|+-|.-.+.-|+.-|+|.+.+.+.=.|.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~ 68 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 68 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeE
Confidence 45677777654 466799999999999999999999999999999998766556664
No 6
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=91.13 E-value=0.14 Score=38.00 Aligned_cols=53 Identities=15% Similarity=0.243 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCce
Q 018790 32 LCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLY 85 (350)
Q Consensus 32 L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y 85 (350)
.-.+.|+++... +..+++.++|+.||+.|--++-+++.|+.-|+|....+..|
T Consensus 11 ~~~~IL~~L~~~-~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~~~~G~y 63 (67)
T 2heo_A 11 LEQKILQVLSDD-GGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSSPSPKYW 63 (67)
T ss_dssp HHHHHHHHHHHH-CSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEEEETTEE
T ss_pred HHHHHHHHHHHc-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEecCCCceE
Confidence 345677887653 34599999999999999999999999999999987544443
No 7
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=90.64 E-value=0.19 Score=37.82 Aligned_cols=44 Identities=16% Similarity=0.366 Sum_probs=38.6
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhh
Q 018790 34 SKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVA 78 (350)
Q Consensus 34 ~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~ 78 (350)
+..++++..+ ++.+++..+|.++||+|--+||+.+=||.=|+|.
T Consensus 13 ~~lL~yIr~s-GGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 13 RELLDYIVNN-GGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHT-TSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHc-CCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 4567777775 6799999999999999999999999999999885
No 8
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=90.33 E-value=0.3 Score=38.76 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=50.5
Q ss_pred cHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEEec
Q 018790 28 SLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQG 89 (350)
Q Consensus 28 SLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W~G 89 (350)
.-..+.++.|.++...+ ++..++|.+||+.|.-++=.++-||.=|+|.+...+--.|.=
T Consensus 14 ~~~~~~~~IL~lL~~~g---~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP~W~~ 72 (82)
T 1oyi_A 14 SNAEIVCEAIKTIGIEG---ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPPRWFM 72 (82)
T ss_dssp CSHHHHHHHHHHHSSST---EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSCEEES
T ss_pred chHHHHHHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCccee
Confidence 34466788888888543 999999999999998888889999999999999888899963
No 9
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=88.06 E-value=0.58 Score=35.12 Aligned_cols=43 Identities=26% Similarity=0.324 Sum_probs=36.7
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhh
Q 018790 35 KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVAR 79 (350)
Q Consensus 35 kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K 79 (350)
+.+.++... +.+++.++|+.||+.+.-++-.++.|+.-|+|.+
T Consensus 4 ~Il~~L~~~--~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 4 EILEFLNRH--NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHS--CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 455666554 3489999999999999999999999999999984
No 10
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=83.54 E-value=2.7 Score=32.34 Aligned_cols=64 Identities=9% Similarity=0.229 Sum_probs=47.1
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC--CCceEEecCCChHHHHHHHHH
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA--KNLYSWQGFDAIPEALEVLKE 102 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~--KN~y~W~G~~nI~~tL~~Lke 102 (350)
.|.++.. +..++.++|+.+|+.+-.++--+..|+..|+|.+.. +..|.-.....+...+..|.+
T Consensus 28 Il~~L~~---~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~~~l~~ 93 (102)
T 3pqk_A 28 LVCTLVE---GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQLVNALYT 93 (102)
T ss_dssp HHHHHHT---CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHHHHHHHH
T ss_pred HHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHHHHHHHH
Confidence 4445533 348999999999999999999999999999997653 333444445566666666653
No 11
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=83.23 E-value=1.2 Score=36.03 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=42.5
Q ss_pred HHHHHHHHhhC-CCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc-CCCceEEecCC
Q 018790 33 CSKFLKLYNRD-GVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ-AKNLYSWQGFD 91 (350)
Q Consensus 33 ~~kFl~l~~~~-~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~-~KN~y~W~G~~ 91 (350)
+-+.+.++... ++..+++.++|+++|+.++-++.|++.|+..|+|... +++--...+..
T Consensus 11 al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~ 71 (129)
T 2y75_A 11 GLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSE 71 (129)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSC
T ss_pred HHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCC
Confidence 34445555443 3567999999999999999999999999999999876 33333334443
No 12
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=83.17 E-value=0.78 Score=37.34 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=38.6
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 35 KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 35 kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.++..+...+...++..++|..+++.+-.+|-.++.|+..|+|.|.
T Consensus 30 ~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 30 NVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 4555555554433999999999999999999999999999999885
No 13
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=83.02 E-value=0.68 Score=38.84 Aligned_cols=54 Identities=7% Similarity=0.127 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 13 EAEPDGKQFYSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 13 ~~~~~~~~~~sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
...+.+.....|++..-..|....++++...+-..++++++|++.||.|.-||-
T Consensus 14 ~~~~~~~~R~~r~~~~r~~Il~aa~~lf~~~G~~~~tv~~IA~~agvs~~t~Y~ 67 (215)
T 2qko_A 14 RENLYFQGHMAQNPERRAALVNAAIEVLAREGARGLTFRAVDVEANVPKGTASN 67 (215)
T ss_dssp -------------CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHSSSTTTCHHH
T ss_pred hhhhhhcccccccHHHHHHHHHHHHHHHHHhChhhccHHHHHHHcCCCcchHHH
Confidence 333333344455666777889999999999888889999999999999998884
No 14
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus}
Probab=82.07 E-value=0.18 Score=43.75 Aligned_cols=52 Identities=23% Similarity=0.391 Sum_probs=38.1
Q ss_pred ccccCCCCccccccCCCCCCcccccchhhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHhhcc
Q 018790 283 VYGPFTPASISGIHDSRSKNTKQVLDFASLASTFRPKYHNEAVNGLFGHYVEAWKSWYAEVGDK 346 (350)
Q Consensus 283 ~~gpf~p~~~~~~~~~~~~~~~~~~d~e~la~~~~pqy~n~~l~~lf~hy~eawkswy~e~~~~ 346 (350)
.|||-+|=...-.+.-.+ ..=--.||++||-. +|.. +||+. ||+||.|.++.
T Consensus 33 ~YGp~APyT~~lle~la~-~~LtP~DW~~lara--------~Ls~--gqyll-Wkse~~d~~q~ 84 (140)
T 2kgf_A 33 QYGATAPYTLAIVESVAD-NWLTPTDWNTLVRA--------VLSG--GDHLL-WKSEFFENCRD 84 (140)
T ss_dssp HTCTTSHHHHHHHHHHHT-SBCCHHHHHHHHHH--------HCCS--HHHHH-HHHHHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHh-CCCChHHHHHHHHH--------HcCc--chhHH-HHHHHHHHHHH
Confidence 689999987665555332 23346899999964 4554 89996 99999998764
No 15
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=82.07 E-value=1.2 Score=35.15 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=41.5
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEE--ecCCChHHHHHHHH
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSW--QGFDAIPEALEVLK 101 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W--~G~~nI~~tL~~Lk 101 (350)
+.+++.++|+.||+.+.-++-.++.|+..|+|.+...+...+ .....+...+..|.
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~l~ 94 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARLFALVQ 94 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHH
Confidence 458999999999999999999999999999998654443333 33334444444444
No 16
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=80.78 E-value=1.8 Score=34.99 Aligned_cols=65 Identities=23% Similarity=0.165 Sum_probs=45.7
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC--CCceEEecCCChHHHHHHHH
Q 018790 35 KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA--KNLYSWQGFDAIPEALEVLK 101 (350)
Q Consensus 35 kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~--KN~y~W~G~~nI~~tL~~Lk 101 (350)
+.|.++... +.+++.++|+.||+.+--++-.++.|+..|+|.+.. +..|.......+...+..+.
T Consensus 46 ~IL~~L~~~--~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~ 112 (122)
T 1u2w_A 46 KITYALCQD--EELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMIAL 112 (122)
T ss_dssp HHHHHHHHS--SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHC--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHHHHH
Confidence 345555433 358999999999999999999999999999997653 33344455545555555443
No 17
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=80.28 E-value=2 Score=32.80 Aligned_cols=55 Identities=11% Similarity=0.257 Sum_probs=40.7
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCc--eEEecCCChHHHHHHH
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNL--YSWQGFDAIPEALEVL 100 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~--y~W~G~~nI~~tL~~L 100 (350)
+.+++.++|+.||+.+.-++--++.|+..|+|.+...+. |.......+...+..|
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~l 91 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKLL 91 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHHH
Confidence 569999999999999999999999999999997764443 3334333333443333
No 18
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=79.57 E-value=0.89 Score=34.25 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=37.2
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 35 KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 35 kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
..+.++... +.++..++|+.+|+.+--+|.+++.|+.-|+|.+..
T Consensus 24 ~il~~l~~~--~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 24 RIYSLLLER--GGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHH--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHc--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 345555443 248999999999999999999999999999999863
No 19
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=79.57 E-value=1.4 Score=33.20 Aligned_cols=47 Identities=9% Similarity=0.116 Sum_probs=38.0
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCc
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNL 84 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~ 84 (350)
.+.++.. ...+++.++|+.||+.+--++-.++.|+..|+|.+...+.
T Consensus 29 il~~l~~--~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r 75 (99)
T 3cuo_A 29 ILCMLSG--SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQ 75 (99)
T ss_dssp HHHHHTT--CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred HHHHHHh--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 4444433 3468999999999999999999999999999998764443
No 20
>2v4x_A JSRV capsid, capsid protein P27; virion, zinc-finger, metal-binding, CAPS protein, structural protein, viral nucleoprotein; HET: MSE; 1.5A {Jaagsiekte sheep retrovirus}
Probab=79.46 E-value=0.3 Score=42.42 Aligned_cols=52 Identities=29% Similarity=0.515 Sum_probs=37.6
Q ss_pred ccccCCCCccccccCCCCCCcccccchhhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHhhcc
Q 018790 283 VYGPFTPASISGIHDSRSKNTKQVLDFASLASTFRPKYHNEAVNGLFGHYVEAWKSWYAEVGDK 346 (350)
Q Consensus 283 ~~gpf~p~~~~~~~~~~~~~~~~~~d~e~la~~~~pqy~n~~l~~lf~hy~eawkswy~e~~~~ 346 (350)
.|||=+|-...-.+.-.+.- =--.||++||-. +|.. ++|+. ||+||.|.++.
T Consensus 28 ~YGp~APyT~a~le~La~~~-LtP~DW~~lara--------~Ls~--gqyll-Wkse~~d~~q~ 79 (140)
T 2v4x_A 28 QYGPTAPFTIAMIENLGTQA-LPPNDWKQTARA--------CLSG--GDYLL-WKSEFFEQCAR 79 (140)
T ss_dssp HTCTTSHHHHHHHHHHHTSC-CCHHHHHHHHHH--------HSCH--HHHHH-HHHHHHHHHHH
T ss_pred HhCCCCchHHHHHHHHHhCC-CChHHHHHHHHH--------HcCc--chhHH-HHHHHHHHHHH
Confidence 68999998766655532222 345899999964 5554 88986 99999998763
No 21
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=79.31 E-value=0.96 Score=34.75 Aligned_cols=48 Identities=13% Similarity=0.233 Sum_probs=39.2
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEE
Q 018790 35 KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSW 87 (350)
Q Consensus 35 kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W 87 (350)
+.+.++ . +.+++.++|+.||+.+--++-.++.|+..|+|.+.. +.|.-
T Consensus 35 ~Il~~L-~---~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~-g~y~l 82 (96)
T 1y0u_A 35 KILRML-D---KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG-ERWVV 82 (96)
T ss_dssp HHHHHH-H---TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred HHHHHH-c---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC-CEEEE
Confidence 355555 3 348999999999999999999999999999999876 54443
No 22
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=78.07 E-value=1.3 Score=35.04 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=39.6
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 35 KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 35 kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
..|.++...+++.+++.++|+.+++.+=.+.-+++-||.-|+|.|.
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 3455555665567999999999999999999999999999999986
No 23
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=77.79 E-value=1.4 Score=34.86 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=38.4
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+|.++...++..+++.++|+.+++.+--+..+++-||.-|+|.+.
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 83 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRK 83 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEee
Confidence 445555555446999999999999999999999999999999986
No 24
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=77.69 E-value=0.6 Score=44.90 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=44.7
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEEecCCChHHHHHHHHHh
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQGFDAIPEALEVLKEE 103 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W~G~~nI~~tL~~Lkee 103 (350)
..+..++|+.+|+.|.++|++++.|+..|+|.+...+...|.-. .....|..|+++
T Consensus 32 ~~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~av-~p~~~l~~l~~~ 87 (342)
T 3qph_A 32 PSTAKEISTKSGIPYNRVYDTISSLKLRGFVTEIEGTPKVYAAY-SPRIAFFRFKKE 87 (342)
T ss_dssp HHHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEECCTTCEEEEC-CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCceeEEEEc-CHHHHHHHHHHH
Confidence 46778899999999999999999999999999886666667643 455566666633
No 25
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=76.97 E-value=0.94 Score=34.21 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=33.4
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
..+++.++|+.+|+.+--+|-+++.|+.-|+|.+..
T Consensus 35 ~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeec
Confidence 358999999999999999999999999999998863
No 26
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=76.93 E-value=2.7 Score=38.75 Aligned_cols=54 Identities=13% Similarity=0.234 Sum_probs=42.0
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEEecC
Q 018790 35 KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQGF 90 (350)
Q Consensus 35 kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W~G~ 90 (350)
..|+++...+ ..+++.++|+++|+.|=-+|-+++.|+..|++.+.....| ..|.
T Consensus 34 ~IL~~l~~~~-~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~~~~Y-~LG~ 87 (275)
T 3mq0_A 34 RILDLVAGSP-RDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSADGTL-RIGP 87 (275)
T ss_dssp HHHHHHHHCS-SCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECTTSEE-EECT
T ss_pred HHHHHHhhCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCcE-EehH
Confidence 4566666654 4699999999999999999999999999999999864444 4564
No 27
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=76.70 E-value=1.6 Score=33.88 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=37.8
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCc
Q 018790 35 KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNL 84 (350)
Q Consensus 35 kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~ 84 (350)
+.|.++.. +.+++.++|+.||+.+--++-.++.|+.-|+|.+...+.
T Consensus 25 ~IL~~L~~---~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr 71 (114)
T 2oqg_A 25 EILTELGR---ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGR 71 (114)
T ss_dssp HHHHHHHH---SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCC
Confidence 35555533 238999999999999999999999999999998754333
No 28
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=76.29 E-value=1.7 Score=34.07 Aligned_cols=63 Identities=10% Similarity=0.141 Sum_probs=44.4
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCc--eEEecCCChHHHHHHHH
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNL--YSWQGFDAIPEALEVLK 101 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~--y~W~G~~nI~~tL~~Lk 101 (350)
.+.++.. +.+++.++|+.||+.+--++-.++.|+..|+|.+...+. |.-.....+...+..+.
T Consensus 31 IL~~L~~---~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~ 95 (106)
T 1r1u_A 31 IMELLSV---SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAI 95 (106)
T ss_dssp HHHHHHH---CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHH
Confidence 4444443 347999999999999999999999999999998654333 33334334445555444
No 29
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=75.91 E-value=5.4 Score=31.37 Aligned_cols=55 Identities=11% Similarity=0.242 Sum_probs=41.6
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc---CCCceEEecC
Q 018790 35 KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ---AKNLYSWQGF 90 (350)
Q Consensus 35 kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~---~KN~y~W~G~ 90 (350)
+.+.++.... +.+++.++|+.+|+.+=-++.+++.|+.-|+|.+. ......+.+.
T Consensus 30 ~il~~L~~~~-~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~ 87 (152)
T 1ku9_A 30 AVYAILYLSD-KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAV 87 (152)
T ss_dssp HHHHHHHHCS-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEEC
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeec
Confidence 3444443222 45999999999999999999999999999999985 2334555555
No 30
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=74.05 E-value=1.4 Score=32.73 Aligned_cols=47 Identities=23% Similarity=0.460 Sum_probs=38.9
Q ss_pred HHHHHHhhCCCceecHHHHHHHh-----CCceeeehhhHHHHhhhhhhhhcC
Q 018790 35 KFLKLYNRDGVESIGLDDAASRL-----GVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 35 kFl~l~~~~~~~~I~L~~aA~~L-----gV~RRRIYDIvNVLEslGli~K~~ 81 (350)
..++++...++..+++.++++.| ++.+=-+|-.++.|+..|+|.+..
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEe
Confidence 35566655432569999999999 999999999999999999999864
No 31
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=73.97 E-value=2.3 Score=34.08 Aligned_cols=45 Identities=16% Similarity=0.238 Sum_probs=38.1
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+|.++...++..+++.++|+.|++.+=-+.-+++-||.-|+|.|.
T Consensus 42 vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 42 VLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 444444554467999999999999999999999999999999985
No 32
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=73.34 E-value=3.1 Score=33.84 Aligned_cols=56 Identities=14% Similarity=0.203 Sum_probs=42.6
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc--CCCceEEecCCChHHHHHHHH
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ--AKNLYSWQGFDAIPEALEVLK 101 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~--~KN~y~W~G~~nI~~tL~~Lk 101 (350)
+..++.++|+.||+.+--++-.++.|+..|+|.+. ++..|.......+...+..+.
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~l~~~~~~l~ 115 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALYQNAL 115 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHH
Confidence 45899999999999999999999999999999764 343444455445555555554
No 33
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=72.84 E-value=4.4 Score=31.67 Aligned_cols=58 Identities=17% Similarity=0.151 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEEe
Q 018790 29 LGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQ 88 (350)
Q Consensus 29 Lg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W~ 88 (350)
.-.+..++|..+. +++.+...++|.+||++|+-|=-++.-|+.=|.|.+...+--.|.
T Consensus 13 ~~~~v~~~i~~L~--~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~PP~W~ 70 (75)
T 1sfu_A 13 IFSLVKKEVLSLN--TNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPPKWF 70 (75)
T ss_dssp HHHHHHHHHHTSC--TTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSCEEE
T ss_pred HHHHHHHHHHhCC--CCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCCCCCcc
Confidence 3344455555443 345599999999999999999999999999999999988888884
No 34
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=72.63 E-value=2.7 Score=36.43 Aligned_cols=56 Identities=21% Similarity=0.328 Sum_probs=43.5
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhh-hhhcCCCceEEecCC
Q 018790 34 SKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGV-VARQAKNLYSWQGFD 91 (350)
Q Consensus 34 ~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGl-i~K~~KN~y~W~G~~ 91 (350)
.+.+.++...+ ..++..++|++|||.+|-||.=++.|+..|+ |.+. ..-|.+....
T Consensus 24 ~~Il~~L~~~~-~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~-~~Gy~l~~~~ 80 (187)
T 1j5y_A 24 KSIVRILERSK-EPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVAT-PRGYVLAGGK 80 (187)
T ss_dssp HHHHHHHHHCS-SCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEE-TTEEECCTTT
T ss_pred HHHHHHHHHcC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE-CCEEEECCcc
Confidence 44666666543 3599999999999999999999999999999 8764 3456666543
No 35
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=71.58 E-value=2.1 Score=34.50 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=31.8
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+|.++...+++.+++.++|+.+++.+=-+.-+++-||.-|+|.|.
T Consensus 46 vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 46 MIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp HHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEee
Confidence 344444444456899999999999999999999999999999987
No 36
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=70.34 E-value=3.5 Score=32.33 Aligned_cols=44 Identities=20% Similarity=0.229 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhh
Q 018790 31 LLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESI 74 (350)
Q Consensus 31 ~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEsl 74 (350)
.+..++++++..+....++|+++|+.+|+.+|.|.-++.-.-++
T Consensus 7 ~~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~ 50 (113)
T 3oio_A 7 PKLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGT 50 (113)
T ss_dssp HHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCc
Confidence 35678889999888788999999999999999998887755443
No 37
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=70.33 E-value=2.7 Score=32.70 Aligned_cols=45 Identities=7% Similarity=0.036 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhh
Q 018790 32 LCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGV 76 (350)
Q Consensus 32 L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGl 76 (350)
+..++++++..+....++|+++|..+|+.+|.|+-++.-.-++..
T Consensus 6 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~ 50 (108)
T 3oou_A 6 IIQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMGEHF 50 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCH
Confidence 456778888877777899999999999999999988876555443
No 38
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=70.16 E-value=2.3 Score=35.00 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=35.6
Q ss_pred CCCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeeh
Q 018790 22 YSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIY 65 (350)
Q Consensus 22 ~sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIY 65 (350)
..|++..-..|....++++...+-..+++.++|++.||.|.-||
T Consensus 26 ~~~~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 69 (218)
T 3dcf_A 26 GRTGNDRRTQIIKVATELFREKGYYATSLDDIADRIGFTKPAIY 69 (218)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHH
T ss_pred CCCccchHHHHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHH
Confidence 34445567778889999999988788999999999999999998
No 39
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=69.96 E-value=3.5 Score=33.20 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=33.5
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCC
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQAK 82 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~K 82 (350)
.+++.++|..|||.+--+.-+++.|+.-|+|.+...
T Consensus 22 ~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 57 (142)
T 1on2_A 22 YARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKY 57 (142)
T ss_dssp SCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeC
Confidence 489999999999999999999999999999998743
No 40
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=69.93 E-value=2.9 Score=39.80 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=46.6
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhh-hhhcCCCceEEecC
Q 018790 34 SKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGV-VARQAKNLYSWQGF 90 (350)
Q Consensus 34 ~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGl-i~K~~KN~y~W~G~ 90 (350)
++.|+++...++..++-.++|++|||.|+-|+.-++.|+..|+ |....+.-|...+.
T Consensus 6 ~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~~~~GY~L~~~ 63 (323)
T 3rkx_A 6 QDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNHKGHLLQQL 63 (323)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEETTTEEEEEEC
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEeCCCeEEEecC
Confidence 5677888665566899999999999999999999999999998 55444456887764
No 41
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=69.78 E-value=3 Score=32.96 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=43.3
Q ss_pred CCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 25 KEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 25 keKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+...|..-=..++.++......-|+..++|.++++...-+-=|+.-||.-|+|.+.
T Consensus 14 k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 14 KMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp CCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 33444433345666666654456999999999999999999999999999999854
No 42
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=69.17 E-value=3.4 Score=31.90 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=32.5
Q ss_pred CceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 45 VESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 45 ~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+..+++.++|+.|||..--+..=++.||.-|+|.|.
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 467999999999999877788889999999999886
No 43
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=68.51 E-value=6 Score=31.58 Aligned_cols=52 Identities=12% Similarity=0.085 Sum_probs=41.3
Q ss_pred HHHHHHHHHhh---CCCcee-cHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCC
Q 018790 32 LCSKFLKLYNR---DGVESI-GLDDAASRLGVERRRIYDVVNILESIGVVARQAKN 83 (350)
Q Consensus 32 L~~kFl~l~~~---~~~~~I-~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN 83 (350)
+...+...+.. .|+..+ +..++|++|||.|--+-..++.|+.-|+|.+....
T Consensus 14 i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~~ 69 (113)
T 3tqn_A 14 LRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRGL 69 (113)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 44444455443 456778 99999999999999999999999999999876443
No 44
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=67.82 E-value=5 Score=31.51 Aligned_cols=35 Identities=20% Similarity=0.466 Sum_probs=32.4
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
.+++.++|+.|++.+--++-.++.||..|+|.+..
T Consensus 45 ~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 45 PLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp CCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 58999999999999999999999999999997653
No 45
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=67.79 E-value=3.5 Score=32.70 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHH
Q 018790 32 LCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNI 70 (350)
Q Consensus 32 L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNV 70 (350)
+..++++++..+....++|+++|..+|+.+|.|.-++.-
T Consensus 8 ~~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 8 MRTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 567888999888888899999999999999988777654
No 46
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=67.27 E-value=6 Score=32.89 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=32.5
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
.+++.++|+.+++.+--+.-+++-||.-|+|.|..
T Consensus 68 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~ 102 (166)
T 3deu_A 68 DQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQT 102 (166)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeC
Confidence 48999999999999999999999999999999873
No 47
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=67.15 E-value=8 Score=30.05 Aligned_cols=58 Identities=12% Similarity=0.271 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc--CCCceEEecCC
Q 018790 32 LCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ--AKNLYSWQGFD 91 (350)
Q Consensus 32 L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~--~KN~y~W~G~~ 91 (350)
+.+.|++++..+ ..+.|+++|.+|++..--.-|=++-||.-|.++=. .+++|.++..+
T Consensus 8 ll~~Fi~yIk~~--Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~e 67 (72)
T 1wi9_A 8 FLTEFINYIKKS--KVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPS 67 (72)
T ss_dssp HHHHHHHHHHHC--SEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCS
T ss_pred HHHHHHHHHHHc--CeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHH
Confidence 448999999986 47999999999999766555666677777766543 45677776543
No 48
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=66.88 E-value=3.6 Score=37.76 Aligned_cols=57 Identities=14% Similarity=0.215 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEEec
Q 018790 31 LLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQG 89 (350)
Q Consensus 31 ~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W~G 89 (350)
....+.|..+...+ .+++.++|+.||+.+--++-+++.|+..|+|.+.........|
T Consensus 152 ~~~~~IL~~L~~~~--~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~~r~~~~~LT 208 (244)
T 2wte_A 152 REEMKLLNVLYETK--GTGITELAKMLDKSEKTLINKIAELKKFGILTQKGKDRKVELN 208 (244)
T ss_dssp HHHHHHHHHHHHHT--CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTTEEEEC
T ss_pred HHHHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCccEEEEC
Confidence 34456677665433 4899999999999999999999999999999997554444443
No 49
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=66.69 E-value=2.3 Score=34.12 Aligned_cols=44 Identities=18% Similarity=0.229 Sum_probs=36.1
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 35 KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 35 kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
+.|.++... ..++.++|+.||+.+--++-.++.|+..|+|.+..
T Consensus 25 ~IL~~L~~~---~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 25 RILVALLDG---VCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp HHHHHHHTT---CCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEE
T ss_pred HHHHHHHcC---CCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEE
Confidence 455555532 36889999999999999999999999999998653
No 50
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=66.66 E-value=3.6 Score=31.91 Aligned_cols=43 Identities=9% Similarity=0.189 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhh
Q 018790 32 LCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESI 74 (350)
Q Consensus 32 L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEsl 74 (350)
+..+.++++..+....++|+++|..+|+.+|.|.-++.-.-++
T Consensus 3 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~G~ 45 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRGY 45 (108)
T ss_dssp HHHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHhCc
Confidence 4567788888777777999999999999999999888755443
No 51
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=66.27 E-value=4.7 Score=36.20 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=42.8
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCC-CceEEecC
Q 018790 35 KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAK-NLYSWQGF 90 (350)
Q Consensus 35 kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~K-N~y~W~G~ 90 (350)
..|+++...+ ..+++.++|+.+|+.|=-+|-+++.|+..|+|.+... ..| ..|.
T Consensus 10 ~iL~~l~~~~-~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~~Y-~lg~ 64 (241)
T 2xrn_A 10 SIMRALGSHP-HGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALGPAGGF-RLGP 64 (241)
T ss_dssp HHHHHHHTCT-TCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECGGGCEE-EECS
T ss_pred HHHHHHHhCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCeE-EECH
Confidence 4556665543 3699999999999999999999999999999999754 344 4554
No 52
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=66.18 E-value=3.3 Score=32.86 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=36.9
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 34 SKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 34 ~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
...|.++...+ ++..++|+.+|+.+=-+.-+++.||.-|+|.+..
T Consensus 41 ~~iL~~l~~~~---~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~ 85 (146)
T 3tgn_A 41 EHILMLLSEES---LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSK 85 (146)
T ss_dssp HHHHHHHTTCC---CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred HHHHHHHHhCC---CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEecc
Confidence 34555555543 9999999999999999999999999999999863
No 53
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=65.56 E-value=3.6 Score=31.32 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=39.0
Q ss_pred cHHHHHHHH--HHHHhhCCCceecHHHHHHHhCCceee-ehhhHHHHhhhhhhhh
Q 018790 28 SLGLLCSKF--LKLYNRDGVESIGLDDAASRLGVERRR-IYDVVNILESIGVVAR 79 (350)
Q Consensus 28 SLg~L~~kF--l~l~~~~~~~~I~L~~aA~~LgV~RRR-IYDIvNVLEslGli~K 79 (350)
.++.+.+.+ |.++...+ ..+++.++|+.+++.+=- ++-+++-||.-|+|.+
T Consensus 10 ~~g~~~~~l~~L~~l~~~~-~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~~ 63 (95)
T 2pg4_A 10 QFGHLIRILPTLLEFEKKG-YEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVKE 63 (95)
T ss_dssp BHHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEEE
T ss_pred HhhhHHHHHHHHHHHHhcC-CCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCeec
Confidence 345555443 33344433 258999999999999999 9999999999999983
No 54
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=65.51 E-value=4.6 Score=33.78 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=38.9
Q ss_pred HHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 33 CSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 33 ~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+-+.+-++-..++..+++.++|+++++..+-+..|+..|...|+|...
T Consensus 16 Al~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~ 63 (149)
T 1ylf_A 16 AVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVN 63 (149)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEc
Confidence 334444444445568999999999999999999999999999999765
No 55
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=64.99 E-value=3.1 Score=33.20 Aligned_cols=33 Identities=12% Similarity=0.238 Sum_probs=32.0
Q ss_pred ecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 48 IGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 48 I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+++.++|+.+++.+--++-+++-||.-|+|.|.
T Consensus 46 ~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 78 (145)
T 3g3z_A 46 RTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQ 78 (145)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 999999999999999999999999999999985
No 56
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=64.94 E-value=5.9 Score=31.16 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=45.7
Q ss_pred CcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEE
Q 018790 27 KSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSW 87 (350)
Q Consensus 27 KSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W 87 (350)
.|-..+.-..|..+.. + +...++|..+|+..|++-.+++.|+.-|+|.+.. +.|.=
T Consensus 4 Rs~~eIi~~IL~~i~~---~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~-~~~~L 59 (95)
T 1r7j_A 4 KSKLEIIQAILEACKS---G-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEG-KQYML 59 (95)
T ss_dssp CCHHHHHHHHHHHHTT---C-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred CCHHHHHHHHHHHHHc---C-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEC-CeeEE
Confidence 4556677777777763 2 8999999999999999999999999999999984 34444
No 57
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=64.76 E-value=4.6 Score=31.55 Aligned_cols=43 Identities=9% Similarity=0.324 Sum_probs=36.3
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
++..+...+ .+++.++|+.+++.+--++-+++-|+.-|+|.+.
T Consensus 38 iL~~l~~~~--~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 38 VIQVLAKSG--KVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHHSC--SEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcC--CcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeec
Confidence 444444433 5999999999999999999999999999999985
No 58
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=64.52 E-value=3.5 Score=30.83 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=36.3
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
.|.++... +.+++.++|+.+|+.+--++-.++.||.-|+|.+..
T Consensus 21 iL~~L~~~--~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~ 64 (100)
T 1ub9_A 21 IMIFLLPR--RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYK 64 (100)
T ss_dssp HHHHHHHH--SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHhc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 44444332 358999999999999999999999999999998653
No 59
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=64.16 E-value=2.5 Score=38.88 Aligned_cols=50 Identities=14% Similarity=0.233 Sum_probs=41.7
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEEe
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQ 88 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W~ 88 (350)
+.+.+.. +.+++.++|.++|+..+.++-++..|.++|++.+..++.|.=.
T Consensus 30 lf~~l~~---g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~~~~~y~~t 79 (332)
T 3i53_A 30 VADHIAA---GHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLT 79 (332)
T ss_dssp HHHHHHT---TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEEC
T ss_pred hHHHHhc---CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEecCCCeEEcC
Confidence 4444543 4699999999999999999999999999999999877776653
No 60
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=64.02 E-value=3 Score=39.32 Aligned_cols=42 Identities=12% Similarity=0.243 Sum_probs=37.7
Q ss_pred CceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCc-eE
Q 018790 45 VESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNL-YS 86 (350)
Q Consensus 45 ~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~-y~ 86 (350)
.+.+++.++|.++|+..|.++-++.+|.++|++.+...+. |.
T Consensus 69 ~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~~~~~~y~ 111 (369)
T 3gwz_A 69 EGPRTATALAEATGAHEQTLRRLLRLLATVGVFDDLGHDDLFA 111 (369)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEECSSTTEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEeCCCceEe
Confidence 4579999999999999999999999999999999976666 54
No 61
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=63.66 E-value=6 Score=35.51 Aligned_cols=54 Identities=19% Similarity=0.428 Sum_probs=42.4
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEEecC
Q 018790 35 KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQGF 90 (350)
Q Consensus 35 kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W~G~ 90 (350)
+.|+++...+ ..+++.++|+++|+.|=-+|-+++.|+..|+|.+.....| ..|.
T Consensus 12 ~iL~~l~~~~-~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~~~~Y-~lg~ 65 (249)
T 1mkm_A 12 EILDFIVKNP-GDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRY-VPGY 65 (249)
T ss_dssp HHHHHHHHCS-SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCE-EECT
T ss_pred HHHHHHHhCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEECCCCcE-EECH
Confidence 4556665543 3589999999999999999999999999999999833344 4554
No 62
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=63.63 E-value=3.2 Score=34.23 Aligned_cols=44 Identities=25% Similarity=0.288 Sum_probs=33.7
Q ss_pred HHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 37 LKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 37 l~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
|.++...++..+++.++|..|++.+=-+.-+++-||.-|+|.|.
T Consensus 52 L~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 95 (168)
T 3u2r_A 52 LRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRT 95 (168)
T ss_dssp HHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeec
Confidence 33333433356999999999999999999999999999999986
No 63
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=63.48 E-value=4.5 Score=33.22 Aligned_cols=46 Identities=13% Similarity=0.356 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhh
Q 018790 32 LCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVAR 79 (350)
Q Consensus 32 L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K 79 (350)
+=.+.|.++... ..++..++|+++|+.+.-+...++-|+.-|+|.+
T Consensus 6 ~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 6 IDLNIIEELKKD--SRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHHC--SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 345677777765 4589999999999999999999999999999986
No 64
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=63.28 E-value=3.5 Score=32.42 Aligned_cols=34 Identities=24% Similarity=0.232 Sum_probs=32.5
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+++.++|+.+++.+--++-+++-||.-|+|.+.
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~ 83 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLARLERDGIVRRW 83 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 4899999999999999999999999999999986
No 65
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=63.22 E-value=7.9 Score=33.18 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 32 LCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 32 L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+-+.|.++-..++..+++.++|+++++.+.-+.-|+.-|..-|+|.-.
T Consensus 13 yAlr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 13 VAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 3444555555555678999999999999999999999999999999655
No 66
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=62.88 E-value=3.1 Score=38.14 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=37.3
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEE
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSW 87 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W 87 (350)
+.+++.++|+++|+..++++-++.+|.++|++.+...+.|.=
T Consensus 40 ~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~~~~y~~ 81 (334)
T 2ip2_A 40 GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYAN 81 (334)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecCCCeEec
Confidence 468999999999999999999999999999999876666554
No 67
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=62.68 E-value=4.4 Score=32.32 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=36.5
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 35 KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 35 kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+|..+...+ .+++.++|+.+++.+=-+.-+++-||.-|+|.+.
T Consensus 44 ~iL~~l~~~~--~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 44 RIISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp HHHHHHHHSS--SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHcCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 3444444443 6899999999999999999999999999999987
No 68
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=62.65 E-value=4.6 Score=32.40 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=35.6
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhh
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVAR 79 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K 79 (350)
+|..+...+ .+++.++|+.+++.+--+.-+++-||.-|+|.+
T Consensus 46 iL~~l~~~~--~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 46 MINVIYSTP--GISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHST--TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 344444443 499999999999999999999999999999998
No 69
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=62.53 E-value=5.8 Score=31.92 Aligned_cols=45 Identities=20% Similarity=0.405 Sum_probs=38.0
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 34 SKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 34 ~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+.|..+... +.++..++|+.+|+.+.-+...++-|+.-|+|.+.
T Consensus 7 ~~il~~L~~~--~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 7 KIILEILEKD--ARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 4566666654 34799999999999999999999999999999764
No 70
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=62.51 E-value=4.6 Score=32.53 Aligned_cols=43 Identities=9% Similarity=0.173 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhh
Q 018790 31 LLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILES 73 (350)
Q Consensus 31 ~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEs 73 (350)
.+..++++++..+....++|+++|+.+|+.+|.|.-++.-.-+
T Consensus 11 ~~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~~G 53 (129)
T 1bl0_A 11 ITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETG 53 (129)
T ss_dssp HHHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 4677888999888777899999999999999988887765433
No 71
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=62.49 E-value=3.7 Score=33.67 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=38.3
Q ss_pred HHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 37 LKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 37 l~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
|.++...+.+.++..++|..+++.+=.+--+++-||.-|+|.|.
T Consensus 41 L~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~ 84 (147)
T 4b8x_A 41 LVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKR 84 (147)
T ss_dssp HHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEe
Confidence 44444456678999999999999999999999999999999986
No 72
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=62.43 E-value=4.8 Score=30.88 Aligned_cols=44 Identities=7% Similarity=-0.013 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhCCCc-eecHHHHHHHhCCceeeehhhHHHHhhhh
Q 018790 32 LCSKFLKLYNRDGVE-SIGLDDAASRLGVERRRIYDVVNILESIG 75 (350)
Q Consensus 32 L~~kFl~l~~~~~~~-~I~L~~aA~~LgV~RRRIYDIvNVLEslG 75 (350)
+..++++++.++... .++++++|+.+|+.+|.|+-++.-.-++.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~g~s 47 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNFGIP 47 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHHHCcC
Confidence 456677777776554 79999999999999999988877655443
No 73
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=62.43 E-value=4.8 Score=32.15 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=34.5
Q ss_pred CceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 45 VESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 45 ~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
...+++.++|+.|++.+--+.-+++.||.-|+|.+..
T Consensus 29 ~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 29 GEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 4569999999999999999999999999999999876
No 74
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=61.66 E-value=3.3 Score=37.59 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=37.4
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEEec
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQG 89 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W~G 89 (350)
..+++.++|+++|+.|--+|-+++.|+..|+|.+...+.|. .|
T Consensus 37 ~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~~~~Y~-lg 79 (260)
T 2o0y_A 37 PTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRADGSYS-LG 79 (260)
T ss_dssp SSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTSCEE-EC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCeEE-ec
Confidence 46999999999999999999999999999999997655443 44
No 75
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=61.61 E-value=3.6 Score=37.45 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=42.7
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEEecCC
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQGFD 91 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W~G~~ 91 (350)
.|+++... ...+++.++|+++|+.|=-+|-+++.|+..|+|.+.....-...|..
T Consensus 11 IL~~l~~~-~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~ 65 (260)
T 3r4k_A 11 LLTYFNHG-RLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVEGARSYRLGPQ 65 (260)
T ss_dssp HHTTCBTT-BSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECSSSSEEEECTT
T ss_pred HHHHHhhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcCCCCcEEcCHH
Confidence 33444333 36799999999999999999999999999999999876333355653
No 76
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=61.50 E-value=4.8 Score=33.31 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=36.2
Q ss_pred CCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 25 KEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 25 keKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
++..-..|....++++...+-..++++++|.+.||.|.-||-
T Consensus 28 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~ 69 (222)
T 3bru_A 28 ASLAHQSLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYH 69 (222)
T ss_dssp GGGHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhh
Confidence 455677888999999999887889999999999999888874
No 77
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=61.27 E-value=3.1 Score=38.79 Aligned_cols=43 Identities=14% Similarity=0.181 Sum_probs=37.5
Q ss_pred CceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEEe
Q 018790 45 VESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQ 88 (350)
Q Consensus 45 ~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W~ 88 (350)
.+.+++.++|.++|+..|.++-++.+|.++|++++ ..+.|.=.
T Consensus 53 ~g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~-~~~~y~~t 95 (348)
T 3lst_A 53 DGPRTPAELAAATGTDADALRRVLRLLAVRDVVRE-SDGRFALT 95 (348)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEEC
T ss_pred CCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe-cCCEEecC
Confidence 35799999999999999999999999999999998 55655543
No 78
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=61.26 E-value=3.6 Score=32.24 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=32.4
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+++.++|+.+++.+--++-+++-||.-|+|.+.
T Consensus 52 ~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~ 85 (140)
T 2nnn_A 52 PCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRS 85 (140)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 5899999999999999999999999999999985
No 79
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=61.11 E-value=5.4 Score=31.74 Aligned_cols=43 Identities=23% Similarity=0.359 Sum_probs=32.7
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+|.++...+ .+++.++|+.+++.+=-+.-+++-||.-|+|.|.
T Consensus 42 vL~~l~~~~--~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 42 VLKLIDEQR--GLNLQDLGRQMCRDKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp HHHHHHHTT--TCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHhCC--CcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeec
Confidence 444444443 4899999999999999999999999999999986
No 80
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=61.08 E-value=4.6 Score=31.96 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=33.5
Q ss_pred CceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 45 VESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 45 ~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+.+++.++|+.+++.+--++-+++-||.-|+|.+.
T Consensus 48 ~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEee
Confidence 346899999999999999999999999999999986
No 81
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=61.07 E-value=4.8 Score=31.56 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=33.5
Q ss_pred ceecHHHHHHHh-CCceeeehhhHHHHhhhhhhhhcC
Q 018790 46 ESIGLDDAASRL-GVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 46 ~~I~L~~aA~~L-gV~RRRIYDIvNVLEslGli~K~~ 81 (350)
+.+++.++|+.+ |+.+..++..++.||.-|+|+|..
T Consensus 26 ~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~ 62 (107)
T 2hzt_A 26 GKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIV 62 (107)
T ss_dssp CCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEee
Confidence 458999999999 999999999999999999999863
No 82
>1p7n_A GAG polyprotein capsid protein P27; retrovirus, immature GAG, V protein; 2.60A {Rous sarcoma virus} SCOP: a.73.1.1
Probab=60.94 E-value=2.1 Score=38.41 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=38.4
Q ss_pred ccccCCCCccccccCCCCCCcccccchhhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHhhccc
Q 018790 283 VYGPFTPASISGIHDSRSKNTKQVLDFASLASTFRPKYHNEAVNGLFGHYVEAWKSWYAEVGDKE 347 (350)
Q Consensus 283 ~~gpf~p~~~~~~~~~~~~~~~~~~d~e~la~~~~pqy~n~~l~~lf~hy~eawkswy~e~~~~~ 347 (350)
.|||=+|-...-.+.-.+ ..=--+||++|+-. +|. =+||+. ||+||.|.++.-
T Consensus 57 ~yG~~aP~T~~~le~La~-~~LtP~Dw~~lara--------vLs--~gqyll-Wksew~~~~q~~ 109 (176)
T 1p7n_A 57 TKGLRSPITMAEVEALMS-SPLLPHDVTNLMRV--------ILG--PAPYAL-WMDAWGVQLQTV 109 (176)
T ss_dssp TTCSSCHHHHHHHHHHTS-SCCCHHHHHHHHHH--------HHC--HHHHHH-HHHHHHHHHHHH
T ss_pred HhCCCcchHHHHHHHHHh-CCCChHHHHHHHHH--------HhC--chhhHH-HHHHHHHHHHHH
Confidence 589999987666655332 23346899999864 454 489996 999999988753
No 83
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=60.90 E-value=6.7 Score=30.35 Aligned_cols=43 Identities=7% Similarity=0.064 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhCCC-ceecHHHHHHHhCCceeeehhhHHHHhhh
Q 018790 32 LCSKFLKLYNRDGV-ESIGLDDAASRLGVERRRIYDVVNILESI 74 (350)
Q Consensus 32 L~~kFl~l~~~~~~-~~I~L~~aA~~LgV~RRRIYDIvNVLEsl 74 (350)
...+.++++.++.. ..++|+++|+.+|+.+|.|.-++.-.-++
T Consensus 4 ~i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G~ 47 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGI 47 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHHHCc
Confidence 45677888888876 78999999999999999998887654443
No 84
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=60.82 E-value=4.6 Score=31.47 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=32.2
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.++..++|+.|||.+=-+...++.|+.-|+|.+.
T Consensus 33 ~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 33 EMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp CBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4899999999999999999999999999999876
No 85
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=60.76 E-value=4.6 Score=31.95 Aligned_cols=35 Identities=9% Similarity=0.373 Sum_probs=32.9
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
.+++.++|..+++.+--++-+++-||.-|+|.+..
T Consensus 51 ~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~ 85 (142)
T 2bv6_A 51 PVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRER 85 (142)
T ss_dssp EEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeec
Confidence 58999999999999999999999999999999864
No 86
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=60.60 E-value=3 Score=37.95 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=35.4
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceE
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYS 86 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~ 86 (350)
+.+++.++|+++|+..|+++-++.+|.++|++++. .+.|.
T Consensus 38 ~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~~-~~~y~ 77 (335)
T 2r3s_A 38 GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQ-AEGYR 77 (335)
T ss_dssp SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEec-CCEEe
Confidence 57999999999999999999999999999999874 45544
No 87
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=60.50 E-value=5 Score=33.51 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhh
Q 018790 29 LGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVAR 79 (350)
Q Consensus 29 Lg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K 79 (350)
|...-.+.|.++...+ .++..++|+.+|+.+.-+...++-|+.-|+|.+
T Consensus 8 ld~~~~~il~~L~~~~--~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENG--RLTNVELSERVALSPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCT--TCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEee
Confidence 4455567888887654 489999999999999999999999999999986
No 88
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=60.25 E-value=8.9 Score=31.57 Aligned_cols=40 Identities=8% Similarity=0.126 Sum_probs=35.8
Q ss_pred CCCcee-cHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCC
Q 018790 43 DGVESI-GLDDAASRLGVERRRIYDVVNILESIGVVARQAK 82 (350)
Q Consensus 43 ~~~~~I-~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~K 82 (350)
.|+..+ +..++|.+|||.|--+-..++.|+.-|+|.....
T Consensus 23 ~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g 63 (129)
T 2ek5_A 23 SIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRG 63 (129)
T ss_dssp CTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETT
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecC
Confidence 466777 9999999999999999999999999999987644
No 89
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=60.02 E-value=4.6 Score=34.46 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=38.9
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.|.++...+.+.+++.++|..+++.+=.+.-+++-|+.-|+|.|.
T Consensus 46 vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 90 (189)
T 3nqo_A 46 TILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVI 90 (189)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 445555555677999999999999999999999999999999985
No 90
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=59.96 E-value=5.6 Score=30.66 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=36.8
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 34 SKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 34 ~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+..++++... +.+++.++|+.|+|..=-|--.++.||.-|+|.|.
T Consensus 5 ~~Il~~L~~~--g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLALR--GRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHS--CSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4566777664 46999999999999866666678999999999987
No 91
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=59.94 E-value=7.8 Score=31.26 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=33.0
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+.+++.++|..|++.+--+.-+++-||.-|+|.|.
T Consensus 61 ~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 61 DGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp TCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred CCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 35999999999999999999999999999999986
No 92
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=59.54 E-value=4.8 Score=32.98 Aligned_cols=38 Identities=24% Similarity=0.247 Sum_probs=34.0
Q ss_pred CCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 44 GVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 44 ~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
+..-+++.++|+++|+..+-+..+++-|+.-|+|.+..
T Consensus 48 ~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 48 GVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp TCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 33348999999999999999999999999999999863
No 93
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=59.22 E-value=5.3 Score=32.90 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhh
Q 018790 30 GLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVAR 79 (350)
Q Consensus 30 g~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K 79 (350)
..+-.+.|.++... ..+++.++|+++|+.+.-+...++-|+.-|+|.+
T Consensus 7 d~~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 7 DNLDRGILEALMGN--ARTAYAELAKQFGVSPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp CHHHHHHHHHHHHC--TTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcce
Confidence 34445777877765 3589999999999999999999999999999986
No 94
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=59.22 E-value=5.5 Score=34.13 Aligned_cols=52 Identities=23% Similarity=0.331 Sum_probs=43.5
Q ss_pred CCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhh
Q 018790 26 EKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVAR 79 (350)
Q Consensus 26 eKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K 79 (350)
...|..+-.+.|.++...+ .+++.++|+++|+.+--+...++-|+.-|+|.+
T Consensus 12 ~~~ld~~d~~IL~~L~~~~--~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 12 EIHLDDLDRNILRLLKKDA--RLTISELSEQLKKPESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp --CCCHHHHHHHHHHHHCT--TCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCCHHHHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3345666678888887754 589999999999999999999999999999976
No 95
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=59.07 E-value=4.5 Score=32.20 Aligned_cols=42 Identities=29% Similarity=0.276 Sum_probs=35.8
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+|..+...++ ++.++|..+++.+=-+.-+++-||.-|+|.|.
T Consensus 42 iL~~l~~~~~---~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~ 83 (144)
T 3f3x_A 42 ILKATSEEPR---SMVYLANRYFVTQSAITAAVDKLEAKGLVRRI 83 (144)
T ss_dssp HHHHHHHSCE---EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHCCC---CHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 4444555443 99999999999999999999999999999987
No 96
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=58.85 E-value=5.4 Score=36.38 Aligned_cols=55 Identities=27% Similarity=0.414 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHH-HHhhhhhhhhcCCC
Q 018790 29 LGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVN-ILESIGVVARQAKN 83 (350)
Q Consensus 29 Lg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvN-VLEslGli~K~~KN 83 (350)
+..+-++++..+-...+..+++..+|+.||+.++.+|+.+. .|...|+|.+...+
T Consensus 261 l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g 316 (338)
T 3pfi_A 261 FDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKG 316 (338)
T ss_dssp CCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTE
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCc
Confidence 33444667766555466789999999999999999999999 99999999887654
No 97
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=58.79 E-value=4.5 Score=32.54 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=31.6
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
.+++.++|+.+++.+=-+.-+++-||.-|+|.|..
T Consensus 54 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~ 88 (150)
T 3fm5_A 54 GVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTL 88 (150)
T ss_dssp CCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeC
Confidence 48999999999999999999999999999999863
No 98
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=58.75 E-value=5.1 Score=32.89 Aligned_cols=49 Identities=18% Similarity=0.397 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhh
Q 018790 29 LGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVAR 79 (350)
Q Consensus 29 Lg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K 79 (350)
|..+-.+.|.++... ..++..++|+.+|+.+..+...++-|+.-|+|.+
T Consensus 7 ld~~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 7 LDRVDMQLVKILSEN--SRLTYRELADILNTTRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp CCHHHHHHHHHHHHC--TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 444556788888765 4599999999999999999999999999999986
No 99
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=58.65 E-value=8.9 Score=29.64 Aligned_cols=54 Identities=17% Similarity=0.358 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhh---CCCcee-cHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCC
Q 018790 29 LGLLCSKFLKLYNR---DGVESI-GLDDAASRLGVERRRIYDVVNILESIGVVARQAK 82 (350)
Q Consensus 29 Lg~L~~kFl~l~~~---~~~~~I-~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~K 82 (350)
...+...+...+.. .++..+ +..++|+.|||.|--+...++.|+.-|+|.+...
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~g 70 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGA 70 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETT
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 44555555555443 355667 9999999999999999999999999999988753
No 100
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=58.08 E-value=6.4 Score=32.43 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhh
Q 018790 29 LGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVAR 79 (350)
Q Consensus 29 Lg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K 79 (350)
|..+-.+.|.++...+ .++..++|++||+.+.-+...++-|+.-|+|.+
T Consensus 5 ld~~~~~il~~L~~~~--~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDG--KAPLREISKITGLAESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp CCHHHHHHHHHHHHCT--TCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCC
T ss_pred cCHHHHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 3344557788777653 599999999999999999999999999999976
No 101
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=58.06 E-value=5.9 Score=31.38 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=37.0
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 34 SKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 34 ~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
+..++++... +.+++.++|+.|+|..=-|--.++.||.-|+|.|..
T Consensus 5 ~~Il~~L~~~--g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLALQ--GRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHHS--CSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHc--CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4556677664 579999999999998666666789999999999873
No 102
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=57.93 E-value=4.5 Score=32.17 Aligned_cols=35 Identities=17% Similarity=0.267 Sum_probs=33.0
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+.+++.++|+.+++.+--+.-+++-||.-|+|.|.
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 84 (143)
T 3oop_A 50 EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVRE 84 (143)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeecc
Confidence 45899999999999999999999999999999986
No 103
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=57.81 E-value=4.3 Score=37.65 Aligned_cols=42 Identities=19% Similarity=0.168 Sum_probs=36.0
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCC--ceEE
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKN--LYSW 87 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN--~y~W 87 (350)
+.+++.++|.++|+..+.++-++.+|.++|++.+...+ .|.=
T Consensus 48 ~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~ 91 (374)
T 1qzz_A 48 GADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGGEKQGRPLRP 91 (374)
T ss_dssp TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECCCC-CCCCEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEeCCCCeEEEE
Confidence 45899999999999999999999999999999986555 5543
No 104
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=57.71 E-value=7.4 Score=32.56 Aligned_cols=34 Identities=9% Similarity=0.150 Sum_probs=32.6
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+++.++|+.|++.+--++-+++-||.-|+|.|.
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECC
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEec
Confidence 4899999999999999999999999999999986
No 105
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=57.36 E-value=6.7 Score=32.22 Aligned_cols=49 Identities=27% Similarity=0.287 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhh
Q 018790 29 LGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVAR 79 (350)
Q Consensus 29 Lg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K 79 (350)
|...-.+.|.++... +.++..++|+++|+.+.-+...++-|+.-|+|.+
T Consensus 5 ld~~~~~iL~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELAAD--GRATLSELATRAGLSVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp CCHHHHHHHHHHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred cCHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 334445677777654 3589999999999999999999999999999965
No 106
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=57.34 E-value=7.1 Score=35.32 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=39.4
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 20 QFYSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 20 ~~~sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
....++..+-..|..--++++....-..+++.++|+++||.+.-||=
T Consensus 20 ~r~~~~~~tr~~Il~AA~~L~~e~G~~~~Smr~IA~~aGVs~~tlY~ 66 (267)
T 2y2z_A 20 SARSHRTLSRDQIVRAAVKVADTEGVEAASMRRVAAELGAGTMSLYY 66 (267)
T ss_dssp CSSTTCEECHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHT
T ss_pred CCCCcccccHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHH
Confidence 33444467888999999999998877889999999999999988884
No 107
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=57.15 E-value=5.9 Score=30.96 Aligned_cols=43 Identities=26% Similarity=0.362 Sum_probs=36.2
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+..+... +.+++.++|+.+++.+--++-+++-||.-|+|.+.
T Consensus 34 iL~~l~~~--~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~ 76 (138)
T 3bpv_A 34 CLLRIHRE--PGIKQDELATFFHVDKGTIARTLRRLEESGFIERE 76 (138)
T ss_dssp HHHHHHHS--TTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHc--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 34444443 35899999999999999999999999999999985
No 108
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=57.10 E-value=5.5 Score=31.67 Aligned_cols=50 Identities=12% Similarity=0.151 Sum_probs=39.3
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEE
Q 018790 35 KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSW 87 (350)
Q Consensus 35 kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W 87 (350)
+.|.++.. +.+++.++|+.||+.+--+.-.+++|+..|+|.+...+...+
T Consensus 22 ~Il~~L~~---~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~ 71 (118)
T 3f6o_A 22 AVLGRLSR---GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRT 71 (118)
T ss_dssp HHHHHHHT---CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HHHHHHHh---CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEE
Confidence 34555553 457999999999999999999999999999997654444333
No 109
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=57.00 E-value=5 Score=36.29 Aligned_cols=51 Identities=20% Similarity=0.308 Sum_probs=40.1
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEEec
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQG 89 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W~G 89 (350)
.|+++... ...+++.++|+++|+.|=-+|-+++.|+..|+|.+.+ ..|. .|
T Consensus 19 iL~~l~~~-~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~~-~~Y~-Lg 69 (257)
T 2g7u_A 19 VLLAFDAQ-RPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGSG-GRWS-LT 69 (257)
T ss_dssp HHHTCSSS-CSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEE-EC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCC-CEEE-Ec
Confidence 34444333 3568999999999999999999999999999999974 4453 44
No 110
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=57.00 E-value=12 Score=30.44 Aligned_cols=52 Identities=10% Similarity=0.139 Sum_probs=41.0
Q ss_pred HHHHHHHHHhh---CCCcee-cHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCC
Q 018790 32 LCSKFLKLYNR---DGVESI-GLDDAASRLGVERRRIYDVVNILESIGVVARQAKN 83 (350)
Q Consensus 32 L~~kFl~l~~~---~~~~~I-~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN 83 (350)
+...+...+.. .|+..+ +..++|.+|||.|--+-..+..|+.-|+|.+....
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g~ 71 (126)
T 3by6_A 16 LVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGK 71 (126)
T ss_dssp HHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCC
Confidence 33444444433 466788 99999999999999999999999999999876443
No 111
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=56.99 E-value=5.5 Score=36.25 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=39.5
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceE
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYS 86 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~ 86 (350)
.|+++... ...+++.++|+++|+.|=-+|-+++.|+..|+|.+.+ ..|.
T Consensus 26 iL~~l~~~-~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~~-~~Y~ 74 (265)
T 2ia2_A 26 VIRCFDHR-NQRRTLSDVARATDLTRATARRFLLTLVELGYVATDG-SAFW 74 (265)
T ss_dssp HHHTCCSS-CSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEESS-SEEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CEEE
Confidence 34444333 3569999999999999999999999999999999974 5554
No 112
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=56.96 E-value=6.6 Score=31.84 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=32.8
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+.+++.++|+.|++.+--++-+++-||.-|+|.+.
T Consensus 65 ~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 65 DGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 35899999999999999999999999999999986
No 113
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=56.96 E-value=4.9 Score=32.54 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=32.4
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+++.++|+.|++.+--++-+++.||.-|+|.+.
T Consensus 58 ~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 91 (154)
T 2eth_A 58 PKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVRE 91 (154)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 5899999999999999999999999999999986
No 114
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=56.89 E-value=6.4 Score=32.17 Aligned_cols=44 Identities=20% Similarity=0.350 Sum_probs=38.2
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhh
Q 018790 34 SKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVAR 79 (350)
Q Consensus 34 ~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K 79 (350)
.+.|.++...+ .++..++|+.||+.+--+...++.|+.-|+|.+
T Consensus 6 ~~il~~L~~~~--~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 6 LRILKILQYNA--KYSLDEIAREIRIPKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHTTCT--TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 45667666543 599999999999999999999999999999987
No 115
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=56.47 E-value=6 Score=31.99 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=32.0
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
+.++..++|..|++.+--++-+++-||.-|+|.+..
T Consensus 62 ~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~ 97 (162)
T 2fa5_A 62 PGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRET 97 (162)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeec
Confidence 358999999999999999999999999999999863
No 116
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=56.39 E-value=6.4 Score=31.41 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=32.6
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.++..++|..+++.+--+.-+++-||.-|+|.+.
T Consensus 54 ~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 54 GATAPQLGAALQMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeec
Confidence 5899999999999999999999999999999986
No 117
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=56.09 E-value=5.5 Score=31.45 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=32.6
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+++.++|+.+++.+--++-+++-||.-|+|.+.
T Consensus 47 ~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~ 80 (145)
T 2a61_A 47 PKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRT 80 (145)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 5899999999999999999999999999999986
No 118
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=56.06 E-value=5.4 Score=31.27 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=32.9
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
.+++.++|+.+++.+--++.+++-||.-|+|.+..
T Consensus 45 ~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~ 79 (142)
T 3bdd_A 45 PLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKR 79 (142)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecC
Confidence 48999999999999999999999999999999873
No 119
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=55.72 E-value=6.7 Score=30.98 Aligned_cols=34 Identities=26% Similarity=0.319 Sum_probs=32.5
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+++.++|..|++.+--++-+++-||.-|+|.+.
T Consensus 43 ~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 43 GIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 5899999999999999999999999999999986
No 120
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=55.71 E-value=6.9 Score=30.54 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=33.5
Q ss_pred CceecHHHHHHHh-CCceeeehhhHHHHhhhhhhhhcC
Q 018790 45 VESIGLDDAASRL-GVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 45 ~~~I~L~~aA~~L-gV~RRRIYDIvNVLEslGli~K~~ 81 (350)
.+.+...++++.+ |+.+..++..++.||.-|+|+|..
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~ 73 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQ 73 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEee
Confidence 3468999999999 599999999999999999999863
No 121
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=55.48 E-value=5.7 Score=31.49 Aligned_cols=46 Identities=15% Similarity=0.156 Sum_probs=37.6
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 34 SKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 34 ~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
-..|..+... .+.+++.++|+.+|+.+--++-+++-||.-|+|.+.
T Consensus 38 ~~iL~~l~~~-~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 38 LVVLGAIDRL-GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeC
Confidence 3344455441 235899999999999999999999999999999986
No 122
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=55.26 E-value=7.2 Score=31.40 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=32.4
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+.++..++|..+++.+--+.-+++-||.-|+|.|.
T Consensus 54 ~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC-
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeC
Confidence 45899999999999999999999999999999987
No 123
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=54.56 E-value=16 Score=31.89 Aligned_cols=56 Identities=16% Similarity=0.139 Sum_probs=42.4
Q ss_pred CCcHHHHH-HHHHHHHhh---CCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 26 EKSLGLLC-SKFLKLYNR---DGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 26 eKSLg~L~-~kFl~l~~~---~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
..++.... ....+.+-. .|+..+...++|++|||.|--|=+.+..|+.-|+|+...
T Consensus 14 ~~~~~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~ 73 (222)
T 3ihu_A 14 DGSASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQR 73 (222)
T ss_dssp --CHHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred cCcHHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 34555544 333343332 678899999999999999999999999999999998653
No 124
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=53.67 E-value=6.3 Score=31.54 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=32.6
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+++.++|+.+++.+--++-+++-||.-|+|.+.
T Consensus 51 ~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 51 SLKVSEIAERMEVKPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp EEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 5899999999999999999999999999999986
No 125
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=53.38 E-value=17 Score=28.15 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHhCCcee-eehhhHHHHhhhhhhhhcCCCceEEe
Q 018790 31 LLCSKFLKLYNRDGVESIGLDDAASRLGVERR-RIYDVVNILESIGVVARQAKNLYSWQ 88 (350)
Q Consensus 31 ~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RR-RIYDIvNVLEslGli~K~~KN~y~W~ 88 (350)
..-.+.+.++.... ..+..++|+.||+.+= -+=-.+..||.=|+|.+.+.+.-.|.
T Consensus 11 ~~~~~IL~~Lk~~g--~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~~~gRP~w~ 67 (79)
T 1xmk_A 11 EIKEKICDYLFNVS--DSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQGTTPPIWH 67 (79)
T ss_dssp HHHHHHHHHHHHTC--CEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEECSSSCEEE
T ss_pred hHHHHHHHHHHHcC--CcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEecCCCCCCeE
Confidence 55678888888765 4789999999999874 66667888999999998776666774
No 126
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=53.09 E-value=4.5 Score=31.96 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=32.9
Q ss_pred eecHHHHHHHh-CCceeeehhhHHHHhhhhhhhhcC
Q 018790 47 SIGLDDAASRL-GVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 47 ~I~L~~aA~~L-gV~RRRIYDIvNVLEslGli~K~~ 81 (350)
.++..++|+.+ ++.+--++.+++.||.-|+|.|..
T Consensus 35 ~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~ 70 (112)
T 1z7u_A 35 TKRNGELMRALDGITQRVLTDRLREMEKDGLVHRES 70 (112)
T ss_dssp CBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEee
Confidence 48999999999 999999999999999999999873
No 127
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=52.93 E-value=8.8 Score=31.34 Aligned_cols=34 Identities=12% Similarity=0.139 Sum_probs=32.6
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+++.++|+.+++.+=-+.-+++-||.-|+|.|.
T Consensus 60 ~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 93 (162)
T 3k0l_A 60 NLSNAKLAERSFIKPQSANKILQDLLANGWIEKA 93 (162)
T ss_dssp TCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEec
Confidence 5899999999999999999999999999999986
No 128
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=52.90 E-value=15 Score=29.98 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=42.6
Q ss_pred HHHHHHHHHhh---CCCcee-cHHHHHHHhCCceeeehhhHHHHhhhhhhhhc-CCCceE
Q 018790 32 LCSKFLKLYNR---DGVESI-GLDDAASRLGVERRRIYDVVNILESIGVVARQ-AKNLYS 86 (350)
Q Consensus 32 L~~kFl~l~~~---~~~~~I-~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~-~KN~y~ 86 (350)
+...+...+.. .|+..+ +..++|.+|||.|=-+-..+..|+.-|+|... +++.|.
T Consensus 19 I~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g~G~~V 78 (134)
T 4ham_A 19 IVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKGKGTFI 78 (134)
T ss_dssp HHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred HHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCcEEEE
Confidence 44455544433 567778 89999999999999999999999999999754 455554
No 129
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=52.76 E-value=7.9 Score=28.57 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhhCCCceecHHHHHHHhC----CceeeehhhHHHHhhhhhhhhcC
Q 018790 30 GLLCSKFLKLYNRDGVESIGLDDAASRLG----VERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 30 g~L~~kFl~l~~~~~~~~I~L~~aA~~Lg----V~RRRIYDIvNVLEslGli~K~~ 81 (350)
...=..+|.++.. .+.++..++|+.|+ +.+--+|-+++.|+.-|+|.|..
T Consensus 8 t~~e~~vL~~L~~--~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 8 SDAELEVMKVIWK--HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp CHHHHHHHHHHHT--SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHc--CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence 3333456666655 34699999999997 56778999999999999999874
No 130
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=52.60 E-value=6.3 Score=31.24 Aligned_cols=35 Identities=11% Similarity=0.335 Sum_probs=32.8
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
.++..++|+.+++.+--++-+++-||.-|+|.+..
T Consensus 54 ~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~ 88 (147)
T 1z91_A 54 TLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKR 88 (147)
T ss_dssp EEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCB
T ss_pred CCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEecc
Confidence 68999999999999999999999999999999863
No 131
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=52.16 E-value=8.9 Score=30.75 Aligned_cols=36 Identities=17% Similarity=0.360 Sum_probs=33.0
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
+.+++.++|+.+++.+--+.-+++-||.-|+|.+..
T Consensus 60 ~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~ 95 (153)
T 2pex_A 60 DERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTR 95 (153)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecC
Confidence 358999999999999999999999999999999863
No 132
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=52.13 E-value=6.3 Score=35.31 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=40.8
Q ss_pred HHHHHHHHHhh---CCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 32 LCSKFLKLYNR---DGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 32 L~~kFl~l~~~---~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
+...+...+-. .|+..++..++|++|||.|=-|-+-+..|+.-|+|....
T Consensus 31 v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~ 83 (237)
T 3c7j_A 31 IEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVET 83 (237)
T ss_dssp HHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 34444444432 577888999999999999999999999999999999874
No 133
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=52.09 E-value=5.7 Score=31.30 Aligned_cols=36 Identities=33% Similarity=0.397 Sum_probs=33.4
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
+.+++.++|+.+++.+--++.+++-|+.-|+|.+..
T Consensus 51 ~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 51 DSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecC
Confidence 458999999999999999999999999999999863
No 134
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=51.81 E-value=10 Score=30.46 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=33.4
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
+.+++.++|+.+++.+--++-+++-||.-|+|.+..
T Consensus 56 ~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~ 91 (155)
T 3cdh_A 56 DAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVA 91 (155)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 458999999999999999999999999999999863
No 135
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=51.77 E-value=6.8 Score=30.69 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=32.1
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.++..++|..+++.+--++-+++-||.-|+|.+.
T Consensus 48 ~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 48 CITPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 4799999999999999999999999999999985
No 136
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=51.45 E-value=13 Score=30.34 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=32.9
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCC
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQAK 82 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~K 82 (350)
.++..++|..|||.+=-+-.+++.||.-|+|.+...
T Consensus 54 ~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 89 (155)
T 2h09_A 54 EARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPW 89 (155)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred CcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecC
Confidence 478999999999999999999999999999998743
No 137
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=51.43 E-value=17 Score=32.43 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=36.7
Q ss_pred CCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCC
Q 018790 43 DGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAK 82 (350)
Q Consensus 43 ~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~K 82 (350)
.|+..++-.++|++|||.|=-|=+-+..|+.-|+|+....
T Consensus 47 ~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~ 86 (239)
T 2hs5_A 47 RPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELN 86 (239)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred CCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 5788899999999999999999999999999999987643
No 138
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=50.91 E-value=6.8 Score=31.23 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=33.8
Q ss_pred CceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 45 VESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 45 ~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+.+++.++|+.+++.+--+.-+++-||.-|+|+|.
T Consensus 48 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 83 (140)
T 3hsr_A 48 DEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRT 83 (140)
T ss_dssp TCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEec
Confidence 357999999999999999999999999999999987
No 139
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=50.87 E-value=7 Score=31.10 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=32.3
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+++.++|+.|++.+--++-+++.||.-|+|.+.
T Consensus 56 ~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 56 DLTVGELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 5899999999999999999999999999999985
No 140
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=50.71 E-value=6.3 Score=36.63 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=36.2
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEE
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSW 87 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W 87 (350)
+.+++.++|+++|+..++++-++.+|.++|++++.. +.|.-
T Consensus 63 ~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~-~~y~~ 103 (359)
T 1x19_A 63 GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLED-GKWSL 103 (359)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEEE
T ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEeeC-CeEec
Confidence 569999999999999999999999999999999874 45543
No 141
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=50.69 E-value=14 Score=30.80 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhCC-CceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 32 LCSKFLKLYNRDG-VESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 32 L~~kFl~l~~~~~-~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+-+.+-++-..+ ...+++.++|+++++.++-+..|+.-|..-|+|.-.
T Consensus 12 yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~ 61 (143)
T 3t8r_A 12 YGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSV 61 (143)
T ss_dssp HHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEec
Confidence 3444555554443 357999999999999999999999999999999743
No 142
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=50.59 E-value=6.9 Score=31.15 Aligned_cols=38 Identities=32% Similarity=0.510 Sum_probs=34.2
Q ss_pred CCcee-cHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 44 GVESI-GLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 44 ~~~~I-~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
++..+ +..++|++|||.|=-+-..+..|+.-|+|.+..
T Consensus 39 ~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 39 GNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp TTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 45556 999999999999999999999999999998775
No 143
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=50.28 E-value=6.2 Score=36.46 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=36.8
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEE
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSW 87 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W 87 (350)
+.+++.++|+++|+..+.++-++.+|.+.|++.+...+.|.-
T Consensus 51 ~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~~g~y~~ 92 (360)
T 1tw3_A 51 GARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVP 92 (360)
T ss_dssp TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecCCCeEEe
Confidence 458999999999999999999999999999999865555554
No 144
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=50.20 E-value=8.2 Score=29.23 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=35.7
Q ss_pred HHHHHhhCCCceecHHHH----HHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 36 FLKLYNRDGVESIGLDDA----ASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~a----A~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
.|..+... +.++..++ |+.+++.+--++-+++-||.-|+|.|..
T Consensus 13 iL~~l~~~--~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~ 60 (99)
T 1tbx_A 13 VLAYLYDN--EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQ 60 (99)
T ss_dssp HHHHHTTC--TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHc--CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 34444333 35788899 9999999999999999999999999863
No 145
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=49.86 E-value=7.5 Score=32.14 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=32.3
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+++.++|+.+++.+--++-+++-||.-|+|.|.
T Consensus 59 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 59 PINLATLATLLGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp SEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 5899999999999999999999999999999985
No 146
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=49.80 E-value=7.9 Score=31.58 Aligned_cols=36 Identities=19% Similarity=0.176 Sum_probs=33.3
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
+.+++.++|+.+++.+=-+.-+++-||.-|+|.|..
T Consensus 66 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~ 101 (161)
T 3e6m_A 66 GELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSI 101 (161)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 368999999999999999999999999999999873
No 147
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=49.59 E-value=9.3 Score=31.00 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=32.9
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+.+++.++|+.+++.+=-+.-+++-||.-|+|.|.
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 97 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQ 97 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 35899999999999999999999999999999987
No 148
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=49.40 E-value=10 Score=30.94 Aligned_cols=46 Identities=17% Similarity=0.417 Sum_probs=38.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 21 FYSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 21 ~~sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
...|++..-..|..-.++++...+-..++++++|++.||.|.-||-
T Consensus 11 ~~~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 56 (207)
T 2rae_A 11 IGRRPSTTQDRISTVGIELFTEQGFDATSVDEVAEASGIARRTLFR 56 (207)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHHHCTTTSCHHHHHHHTTSCHHHHHH
T ss_pred cccchHhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcchHhh
Confidence 3455566777888999999988877789999999999999888873
No 149
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=49.02 E-value=11 Score=32.38 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhh
Q 018790 29 LGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVAR 79 (350)
Q Consensus 29 Lg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K 79 (350)
|..+-.+.|.++...+ .+++.++|+++|+...-+..-++-|+.-|+|.+
T Consensus 25 ld~~d~~IL~~L~~~~--~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~ 73 (171)
T 2e1c_A 25 LDEIDKKIIKILQNDG--KAPLREISKITGLAESTIHERIRKLRESGVIKK 73 (171)
T ss_dssp CCHHHHHHHHHHHHCT--TCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCC
T ss_pred CCHHHHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEe
Confidence 5556678888887753 699999999999999999999999999999976
No 150
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=49.00 E-value=19 Score=29.21 Aligned_cols=51 Identities=14% Similarity=0.216 Sum_probs=40.6
Q ss_pred HHHHHHHHHhh---CCCcee-cHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCC
Q 018790 32 LCSKFLKLYNR---DGVESI-GLDDAASRLGVERRRIYDVVNILESIGVVARQAK 82 (350)
Q Consensus 32 L~~kFl~l~~~---~~~~~I-~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~K 82 (350)
+...+...+.. .|+..+ +..++|.+|||.|--+-..+..|+.-|+|.+...
T Consensus 18 i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g 72 (125)
T 3neu_A 18 ISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG 72 (125)
T ss_dssp HHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecC
Confidence 44555555543 456677 6999999999999999999999999999988643
No 151
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=48.81 E-value=7.1 Score=27.25 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=11.1
Q ss_pred chHHHHHHHHHH
Q 018790 322 NEAVNGLFGHYV 333 (350)
Q Consensus 322 n~~l~~lf~hy~ 333 (350)
.|||.||++.||
T Consensus 25 rqALQdLlseY~ 36 (40)
T 4e17_B 25 RQALQDLLSEYM 36 (40)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 599999999998
No 152
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=47.28 E-value=10 Score=32.93 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=36.4
Q ss_pred CCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCC
Q 018790 43 DGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAK 82 (350)
Q Consensus 43 ~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~K 82 (350)
.|+..++-.++|++|||.|--|=+.+..|+.-|+|+....
T Consensus 31 ~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~ 70 (218)
T 3sxy_A 31 KLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPR 70 (218)
T ss_dssp CTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETT
T ss_pred CCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 5788899999999999999999999999999999986643
No 153
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=47.23 E-value=8.2 Score=33.39 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=32.9
Q ss_pred CceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 45 VESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 45 ~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
+...++.++|+.||+.+--++..++.||.-|+|.+..
T Consensus 22 g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~~ 58 (196)
T 3k2z_A 22 GYPPSVREIARRFRITPRGALLHLIALEKKGYIERKN 58 (196)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC-
T ss_pred CCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEecC
Confidence 4568999999999999889999999999999998864
No 154
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=47.11 E-value=8.2 Score=32.63 Aligned_cols=54 Identities=13% Similarity=0.318 Sum_probs=41.9
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEEecC
Q 018790 34 SKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQGF 90 (350)
Q Consensus 34 ~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W~G~ 90 (350)
.+.|.++.. +.+++.++|+.||+.+--+.--+.+|+..|+|.+...+...+.-.
T Consensus 61 ~~IL~~L~~---~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~l 114 (151)
T 3f6v_A 61 RRLVQLLTS---GEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRL 114 (151)
T ss_dssp HHHHHHGGG---CCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred HHHHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEE
Confidence 345555553 358999999999999999999999999999998765554444433
No 155
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=46.04 E-value=8.5 Score=35.42 Aligned_cols=39 Identities=10% Similarity=0.322 Sum_probs=35.5
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceE
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYS 86 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~ 86 (350)
.+++.++|.++|+..|.++-++.+|.++|++++.+ +.|.
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~-~~y~ 94 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALGLLTKEG-DAFR 94 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET-TEEE
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecC-Ceee
Confidence 79999999999999999999999999999999875 4544
No 156
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription regulation, transcription repressor, drug binding, transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB: 3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Probab=45.85 E-value=5.8 Score=32.56 Aligned_cols=49 Identities=16% Similarity=0.166 Sum_probs=39.2
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeeh
Q 018790 17 DGKQFYSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIY 65 (350)
Q Consensus 17 ~~~~~~sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIY 65 (350)
.+.....|++..-..|....++++...+-..++++++|++.||.+.-||
T Consensus 9 ~~~~~~~r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY 57 (216)
T 3qqa_A 9 SNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSGGSYSNIY 57 (216)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHTCTTTCCHHHHHHHHTTSCCSSS
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHcChhhCCHHHHHHHhCCCHHHHH
Confidence 3344555666677788888999999888888999999999999998888
No 157
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=45.81 E-value=8.8 Score=36.03 Aligned_cols=40 Identities=20% Similarity=0.330 Sum_probs=35.4
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceE
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYS 86 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~ 86 (350)
+.+++.++|.++|+..|.++-++.+|.++|++++. .+.|.
T Consensus 49 ~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~-~~~y~ 88 (363)
T 3dp7_A 49 EGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE-EDRYV 88 (363)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE-TTEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEec-CCEEe
Confidence 57999999999999999999999999999999875 45444
No 158
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=45.50 E-value=9.8 Score=31.27 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=41.5
Q ss_pred CCCcHHHHHHHH----HHHHhhCCCceecHHHHHHHh-CCceeeehhhHHHHhhhhhhhhcC
Q 018790 25 KEKSLGLLCSKF----LKLYNRDGVESIGLDDAASRL-GVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 25 keKSLg~L~~kF----l~l~~~~~~~~I~L~~aA~~L-gV~RRRIYDIvNVLEslGli~K~~ 81 (350)
-...|..+..+. |..+. .+.+...++++.+ |+.+.-+...++.||.-|+|+|..
T Consensus 25 ~~~~l~~l~~~w~l~IL~~L~---~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~ 83 (131)
T 1yyv_A 25 SREVLKHVTSRWGVLILVALR---DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVS 83 (131)
T ss_dssp HHHHHHHHHSHHHHHHHHHGG---GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHcCCcHHHHHHHHH---cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEe
Confidence 334566666443 33333 3468999999999 799999999999999999999863
No 159
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=45.44 E-value=6.5 Score=33.45 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 27 KSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 27 KSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
..-..|....++++...+-..++++++|++.||.|.-||-
T Consensus 43 ~~r~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~ 82 (229)
T 3bni_A 43 ERLTRILDACADLLDEVGYDALSTRAVALRADVPIGSVYR 82 (229)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHH
Confidence 3456788888899988877889999999999999988884
No 160
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=45.09 E-value=13 Score=31.09 Aligned_cols=43 Identities=7% Similarity=0.054 Sum_probs=36.2
Q ss_pred HHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 38 KLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 38 ~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
..+......-.++.++|.++|+..+-|+.+++-|+.=|+|.+.
T Consensus 42 ~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 42 KMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp HHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3334444456899999999999999999999999999999983
No 161
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=44.88 E-value=8.8 Score=27.89 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=30.0
Q ss_pred CceecHHHHHHHhCCceeeehhhHHHHhhhhhh---hhcCCCceEEe
Q 018790 45 VESIGLDDAASRLGVERRRIYDVVNILESIGVV---ARQAKNLYSWQ 88 (350)
Q Consensus 45 ~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli---~K~~KN~y~W~ 88 (350)
...+++.++|..|||.|..||..++- |-. -|.++.. .|.
T Consensus 8 ~~~l~~~eva~~lgvsrstiy~~~~~----g~fP~piklG~~~-~w~ 49 (66)
T 1z4h_A 8 DSLVDLKFIMADTGFGKTFIYDRIKS----GDLPKAKVIHGRA-RWL 49 (66)
T ss_dssp SSEECHHHHHHHHSSCHHHHHHHHHH----HHCCCSEESSSCE-EEE
T ss_pred ccccCHHHHHHHHCcCHHHHHHHHHC----CCCCCCEEeCCCe-EEe
Confidence 56899999999999999999998873 333 2455555 476
No 162
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=44.84 E-value=13 Score=32.91 Aligned_cols=38 Identities=16% Similarity=0.093 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHH
Q 018790 32 LCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVN 69 (350)
Q Consensus 32 L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvN 69 (350)
+..++++++.++....++|+++|+.+|+.+|.+..++-
T Consensus 170 ~~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk 207 (276)
T 3gbg_A 170 AMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE 207 (276)
T ss_dssp HHHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 56788899988888899999999999999999988774
No 163
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=44.09 E-value=12 Score=30.68 Aligned_cols=53 Identities=8% Similarity=0.154 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHh--CCceeeehhhHHHHhhhhhhhhcCCC
Q 018790 29 LGLLCSKFLKLYNRDGVESIGLDDAASRL--GVERRRIYDVVNILESIGVVARQAKN 83 (350)
Q Consensus 29 Lg~L~~kFl~l~~~~~~~~I~L~~aA~~L--gV~RRRIYDIvNVLEslGli~K~~KN 83 (350)
+...-.+.|+++... +.++..++|..+ ++.+-.+-.-+.+|+.-|+|++.+..
T Consensus 11 md~~d~~IL~~L~~~--g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~~rg 65 (111)
T 3b73_A 11 MTIWDDRILEIIHEE--GNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANG 65 (111)
T ss_dssp CCHHHHHHHHHHHHH--SCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTT
T ss_pred cCHHHHHHHHHHHHc--CCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEecCCc
Confidence 334457788888663 369999999999 99999999999999999999987554
No 164
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=43.57 E-value=17 Score=29.70 Aligned_cols=40 Identities=15% Similarity=0.315 Sum_probs=34.4
Q ss_pred CCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeeh
Q 018790 26 EKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIY 65 (350)
Q Consensus 26 eKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIY 65 (350)
+..=..|....++++.+.+-..++++++|++.||.|.-||
T Consensus 12 ~~~r~~Il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y 51 (195)
T 2iu5_A 12 IITQKIIAKAFKDLMQSNAYHQISVSDIMQTAKIRRQTFY 51 (195)
T ss_dssp SHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCGGGGG
T ss_pred HHHHHHHHHHHHHHHHhCCCCeeCHHHHHHHhCCCHHHHH
Confidence 3355678888999999887778999999999999999888
No 165
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=43.52 E-value=9.9 Score=28.92 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=32.0
Q ss_pred CCceecHHHHHHHhCCceeeehhhHHHHhhhhhhh
Q 018790 44 GVESIGLDDAASRLGVERRRIYDVVNILESIGVVA 78 (350)
Q Consensus 44 ~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~ 78 (350)
++..+++.++|..+++.+=-++-+++.||.-|+|.
T Consensus 27 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~ 61 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMVE 61 (95)
T ss_dssp TTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCcc
Confidence 34569999999999999999999999999999993
No 166
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=43.32 E-value=12 Score=29.78 Aligned_cols=56 Identities=23% Similarity=0.375 Sum_probs=40.7
Q ss_pred CCcHHHHHHH----HHHHHhhCCCceecHHHHHHHh-CCceeeehhhHHHHhhhhhhhhcCC
Q 018790 26 EKSLGLLCSK----FLKLYNRDGVESIGLDDAASRL-GVERRRIYDVVNILESIGVVARQAK 82 (350)
Q Consensus 26 eKSLg~L~~k----Fl~l~~~~~~~~I~L~~aA~~L-gV~RRRIYDIvNVLEslGli~K~~K 82 (350)
...|..|..+ .|..+. .....++..++++.+ |+.+.-+...+..||.-|+|+|...
T Consensus 18 ~~~l~~l~~~wrl~IL~~L~-~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 18 ESVLHLLGKKYTMLIISVLG-NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp SSTHHHHHSTTHHHHHHHHT-SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred HHHHHHHcCccHHHHHHHHh-cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 3455555533 233333 222235599999999 9999999999999999999999743
No 167
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=43.19 E-value=9.8 Score=30.51 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=32.4
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhh
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVAR 79 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K 79 (350)
+.+++.++|..+++.+=-+.-+++-||.-|+|.|
T Consensus 50 ~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r 83 (151)
T 3kp7_A 50 EALTVGQITEKQGVNKAAVSRRVKKLLNAELVKL 83 (151)
T ss_dssp SCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4599999999999999999999999999999998
No 168
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=42.03 E-value=22 Score=31.12 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=36.2
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 21 FYSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 21 ~~sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
...|...+-..|..--++++....-..+++.++|+++||.+--||-
T Consensus 10 r~~~~~~~r~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 55 (237)
T 2hxo_A 10 ERRQEPLSRERIVGAAVELLDTVGERGLTFRALAERLATGPGAIYW 55 (237)
T ss_dssp ------CCHHHHHHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGG
T ss_pred CCCCCccCHHHHHHHHHHHHHhcCcccCCHHHHHHHHCCChHHHHH
Confidence 3445566778899999999999888889999999999999998884
No 169
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=41.98 E-value=9.1 Score=31.87 Aligned_cols=54 Identities=11% Similarity=0.126 Sum_probs=41.6
Q ss_pred CCCcHHHHHHH----HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 25 KEKSLGLLCSK----FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 25 keKSLg~L~~k----Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
-...|..+..+ .|..+. .+.+.+.++++.||+.+--+...++.||.-|+|+|..
T Consensus 14 ~~~~l~~l~~~w~l~IL~~L~---~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~ 71 (146)
T 2f2e_A 14 VARPLDVIGDGWSMLIVRDAF---EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVP 71 (146)
T ss_dssp TTTTHHHHCSSSHHHHHHHHH---TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhCCchHHHHHHHHH---hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 34566666533 233332 2458999999999999999999999999999999874
No 170
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=41.65 E-value=17 Score=29.48 Aligned_cols=44 Identities=16% Similarity=0.161 Sum_probs=37.2
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 23 SRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 23 sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
.+++..-..|....++++...+-..++++++|++.||.|.-||-
T Consensus 12 ~~~~~~r~~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~ 55 (213)
T 2qtq_A 12 LETPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKY 55 (213)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhH
Confidence 45566677888999999988877889999999999999888873
No 171
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=41.65 E-value=13 Score=35.73 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=38.4
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+|..+...+++.+++.++|+++++.+=.|==+++-||.-|+|.|.
T Consensus 409 vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~ 453 (487)
T 1hsj_A 409 ILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKK 453 (487)
T ss_dssp HHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCE
T ss_pred HHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 444455555567999999999999999999999999999999996
No 172
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=41.58 E-value=14 Score=29.92 Aligned_cols=42 Identities=12% Similarity=0.257 Sum_probs=35.2
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeeh
Q 018790 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIY 65 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIY 65 (350)
|++..-..|..-.++++...+-..++++++|++.||.|.-||
T Consensus 13 ~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y 54 (211)
T 3him_A 13 GTSKAAARIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVY 54 (211)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSST
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhh
Confidence 445566678888999998877778999999999999998888
No 173
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=41.55 E-value=15 Score=30.72 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=44.1
Q ss_pred CceecHHHHHHHh-CCceeeehhhHHHHhhhhhhhhcCCC----ceEE----ecCCChHHHHHHHHHhc
Q 018790 45 VESIGLDDAASRL-GVERRRIYDVVNILESIGVVARQAKN----LYSW----QGFDAIPEALEVLKEEG 104 (350)
Q Consensus 45 ~~~I~L~~aA~~L-gV~RRRIYDIvNVLEslGli~K~~KN----~y~W----~G~~nI~~tL~~Lkeeg 104 (350)
.+.....++++.+ |+.++-+...+..||.-|+|+|..-. .+.+ .|. .+...|..|.+=|
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~-~l~~~l~~l~~W~ 104 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGR-TLEPIVLQMKEWG 104 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGG-GGHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHH-HHHHHHHHHHHHH
Confidence 4568999999999 99999999999999999999997422 2222 455 3455566666433
No 174
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=41.34 E-value=17 Score=28.91 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=35.2
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeeh
Q 018790 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIY 65 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIY 65 (350)
+++..-..|....++++...+-..++++++|++.||.|.-||
T Consensus 6 ~~~~~r~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 47 (195)
T 3ppb_A 6 SKRTKKQAILETALQLFVSQGFHGTSTATIAREAGVATGTLF 47 (195)
T ss_dssp --CCHHHHHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHH
Confidence 344556678889999999988788999999999999999888
No 175
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=41.27 E-value=28 Score=30.54 Aligned_cols=37 Identities=19% Similarity=0.402 Sum_probs=34.2
Q ss_pred CCCcee-cHHHHHHHhCCceeeehhhHHHHhhhhhhhh
Q 018790 43 DGVESI-GLDDAASRLGVERRRIYDVVNILESIGVVAR 79 (350)
Q Consensus 43 ~~~~~I-~L~~aA~~LgV~RRRIYDIvNVLEslGli~K 79 (350)
.|+..+ +-.++|++|||.|--+=+.+..|+.-|+|+.
T Consensus 23 ~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 23 KIGDHLPSERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp CTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred CCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 567788 6889999999999999999999999999987
No 176
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=40.73 E-value=10 Score=32.98 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=38.0
Q ss_pred CceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCce-----EEe--c--CCChHHHHHHHHHhch
Q 018790 45 VESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLY-----SWQ--G--FDAIPEALEVLKEEGL 105 (350)
Q Consensus 45 ~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y-----~W~--G--~~nI~~tL~~Lkeeg~ 105 (350)
...+++.++|+.|||.+.|+|+.+.==+=++ -|.+ +.+ ... | ...++.+|.-|...|.
T Consensus 29 ~~~LTv~EVAe~LgVs~srV~~LIr~G~L~A--Vr~G-r~~rVP~~f~~~~g~vv~~L~G~l~vL~D~G~ 95 (148)
T 2kfs_A 29 EPTYDLPRVAELLGVPVSKVAQQLREGHLVA--VRRA-GGVVIPQVFFTNSGQVVKSLPGLLTILHDGGY 95 (148)
T ss_dssp SCEEEHHHHHHHHTCCHHHHHHHHHTTSCCC--EEET-TEEEEEGGGBCTTSCBCTTHHHHHHHHHHTTC
T ss_pred CceEcHHHHHHHhCCCHHHHHHHHHCCCceE--EEEC-CEEEecHHHhccCCCccCCCccHHHHHhcCCC
Confidence 4689999999999999999999865322111 1222 221 112 3 3467888888887773
No 177
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=40.71 E-value=22 Score=30.97 Aligned_cols=59 Identities=15% Similarity=0.105 Sum_probs=44.0
Q ss_pred cHHHHH-HHHHHHHhh---CCCcee-cHHHHHHHhCCceeeehhhHHHHhhhhhhhhc-CCCceE
Q 018790 28 SLGLLC-SKFLKLYNR---DGVESI-GLDDAASRLGVERRRIYDVVNILESIGVVARQ-AKNLYS 86 (350)
Q Consensus 28 SLg~L~-~kFl~l~~~---~~~~~I-~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~-~KN~y~ 86 (350)
++.... ....+.+.. .|+..+ +-.++|++|||.|=-+-+-+..|+.-|+|.+. +++.|.
T Consensus 7 ~~~~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~g~G~~V 71 (239)
T 1hw1_A 7 SPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKV 71 (239)
T ss_dssp SHHHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEE
T ss_pred cHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEecCCCcEe
Confidence 444333 334444433 567888 89999999999999999999999999999876 444444
No 178
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=40.64 E-value=19 Score=22.76 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=25.7
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhh
Q 018790 35 KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILES 73 (350)
Q Consensus 35 kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEs 73 (350)
.++.++.. -++..++|..|||.+.-||.++.-++.
T Consensus 13 ~i~~~~~~----g~s~~~IA~~lgis~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 13 QLDVMKLL----NVSLHEMSRKISRSRHCIRVYLKDPVS 47 (51)
T ss_dssp HHHHHHHT----TCCHHHHHHHHTCCHHHHHHHHHCSTT
T ss_pred HHHHHHHc----CCCHHHHHHHHCcCHHHHHHHHhhHHh
Confidence 45555533 268999999999999999988765443
No 179
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=40.50 E-value=11 Score=34.99 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=35.5
Q ss_pred ceecHHHHHHHhCC---ceeeehhhHHHHhhhhhhhhc--CCCceEE
Q 018790 46 ESIGLDDAASRLGV---ERRRIYDVVNILESIGVVARQ--AKNLYSW 87 (350)
Q Consensus 46 ~~I~L~~aA~~LgV---~RRRIYDIvNVLEslGli~K~--~KN~y~W 87 (350)
+.+++.++|.++|+ ..++++-++.+|.++|++++. +.+.|.-
T Consensus 50 ~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~ 96 (352)
T 1fp2_A 50 KPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYAL 96 (352)
T ss_dssp SCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEE
T ss_pred CCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEecCCCCeEeC
Confidence 36999999999999 588999999999999999987 3455543
No 180
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=40.41 E-value=8 Score=30.78 Aligned_cols=42 Identities=19% Similarity=0.328 Sum_probs=35.1
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeeh
Q 018790 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIY 65 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIY 65 (350)
|.+..-..|..-.++++...+-..++++++|++.||.|.-||
T Consensus 9 r~~~tr~~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y 50 (177)
T 3kkc_A 9 QIQKTKVAIYNAFISLLQENDYSKITVQDVIGLANVGRSTFY 50 (177)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCTTTCCHHHHHHHHCCCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHhhHHHHHHHhCCcHhhHH
Confidence 344455677888899998888788999999999999988887
No 181
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=39.98 E-value=20 Score=29.11 Aligned_cols=43 Identities=26% Similarity=0.423 Sum_probs=35.2
Q ss_pred CCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhh
Q 018790 25 KEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDV 67 (350)
Q Consensus 25 keKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDI 67 (350)
++..=..|..-.++++...+-..++++++|++.||.|.-||-=
T Consensus 5 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~ 47 (195)
T 2dg7_A 5 DPGAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRY 47 (195)
T ss_dssp CTTHHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCccccCHHHHHHHhCCCHHHHHHH
Confidence 3444566788888999888778899999999999999888843
No 182
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=39.87 E-value=17 Score=33.26 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=37.0
Q ss_pred HHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 37 LKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 37 l~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
|..+...++..++..++|+.+++.+=.+--+++-||.-|+|.|.
T Consensus 164 L~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~ 207 (250)
T 1p4x_A 164 LAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKE 207 (250)
T ss_dssp HHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEE
T ss_pred HHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 33444444446999999999999999999999999999999996
No 183
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=39.85 E-value=19 Score=28.99 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=34.7
Q ss_pred CCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 25 KEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 25 keKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
.+..-..|....++++...+-..++++++|++.||.|.-||-
T Consensus 15 ~~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~ 56 (206)
T 3kz9_A 15 PLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFN 56 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHH
Confidence 333455678888889988888889999999999999888884
No 184
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=39.09 E-value=12 Score=31.77 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=34.2
Q ss_pred CCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 26 EKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 26 eKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
+..-..|....++++...+-..++++++|++.||.+.-||-
T Consensus 43 ~~~r~~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~ 83 (236)
T 3q0w_A 43 DDRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYF 83 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHHHH
Confidence 33455688888899988877889999999999999888884
No 185
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=39.02 E-value=18 Score=33.95 Aligned_cols=54 Identities=22% Similarity=0.208 Sum_probs=41.0
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhh-cCCCceEEec
Q 018790 34 SKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVAR-QAKNLYSWQG 89 (350)
Q Consensus 34 ~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K-~~KN~y~W~G 89 (350)
.+.+.++.. ...++..++|++|+|.++-|+--++.|+..|++.. ....-|...+
T Consensus 8 ~~Il~~L~~--~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~~~~g~GY~l~~ 62 (321)
T 1bia_A 8 LKLIALLAN--GEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPGKGYSLPE 62 (321)
T ss_dssp HHHHHHHTT--SSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETTTEEECSS
T ss_pred HHHHHHHHc--CCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEecCCCcEEee
Confidence 456666643 45799999999999999999999999999999853 2222455543
No 186
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=38.65 E-value=19 Score=28.64 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=35.1
Q ss_pred CCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhH
Q 018790 25 KEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVV 68 (350)
Q Consensus 25 keKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIv 68 (350)
++..-..|....++++...+-..+++.++|++.||.|.-||-=+
T Consensus 4 ~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F 47 (191)
T 1sgm_A 4 RGDSREKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFF 47 (191)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHST
T ss_pred ccchHHHHHHHHHHHHHHcCccccCHHHHHHHHCCCchhHHHHc
Confidence 34445567888889998887788999999999999998888443
No 187
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=38.60 E-value=10 Score=30.90 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=39.9
Q ss_pred HHHHHHHHHhh---CCCcee-cHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCC
Q 018790 32 LCSKFLKLYNR---DGVESI-GLDDAASRLGVERRRIYDVVNILESIGVVARQAK 82 (350)
Q Consensus 32 L~~kFl~l~~~---~~~~~I-~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~K 82 (350)
+...+...+.. .|+..+ +..++|.+|||.|--+-..+..|+.-|+|.+...
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~ 70 (126)
T 3ic7_A 16 IADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRG 70 (126)
T ss_dssp HHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETT
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcC
Confidence 44445555433 456778 8999999999999999999999999999987643
No 188
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=38.51 E-value=30 Score=28.59 Aligned_cols=48 Identities=10% Similarity=0.205 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 31 LLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 31 ~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
..+-+.+-++-..++ . ++.++|+++++..+-+..|+.-|..-|+|.-.
T Consensus 9 ~yAl~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~ 56 (145)
T 1xd7_A 9 AVAIHILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLKKADILTSR 56 (145)
T ss_dssp HHHHHHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEee
Confidence 344444445544444 3 99999999999999999999999999999755
No 189
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=38.40 E-value=7.2 Score=32.34 Aligned_cols=40 Identities=13% Similarity=0.225 Sum_probs=7.7
Q ss_pred CcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 27 KSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 27 KSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
..-..|..-.++++...+-..++++++|++.||.|.-||-
T Consensus 30 ~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 69 (212)
T 2np3_A 30 RTREAILTAARVCFAERGFDATSLRRIAETAGVDQSLVHH 69 (212)
T ss_dssp -----CHHHHHHHC--------------------------
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHH
Confidence 4556677888899988887889999999999999888873
No 190
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=38.26 E-value=32 Score=30.84 Aligned_cols=55 Identities=11% Similarity=0.224 Sum_probs=42.5
Q ss_pred HHHHHHHHHhh---CCCcee-cHHHHHHHhCCceeeehhhHHHHhhhhhhhhc-CCCceE
Q 018790 32 LCSKFLKLYNR---DGVESI-GLDDAASRLGVERRRIYDVVNILESIGVVARQ-AKNLYS 86 (350)
Q Consensus 32 L~~kFl~l~~~---~~~~~I-~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~-~KN~y~ 86 (350)
+...+.+.+.. .++..+ +..++|++|||.|=-+-..++.|+.-|+|.+. +++.|.
T Consensus 15 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V 74 (243)
T 2wv0_A 15 IMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFV 74 (243)
T ss_dssp HHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSCEEE
T ss_pred HHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeCCCeEEE
Confidence 44445555544 456777 89999999999999999999999999999875 455444
No 191
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=38.21 E-value=17 Score=29.06 Aligned_cols=43 Identities=23% Similarity=0.408 Sum_probs=35.5
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
|.+..-..|..-.++++...+-..++++++|++.||.|.-||-
T Consensus 5 r~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (183)
T 1zk8_A 5 RIGLTLQKIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYN 47 (183)
T ss_dssp -CCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHH
Confidence 4455667788889999988777789999999999999888873
No 192
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=37.71 E-value=28 Score=31.10 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhh---CCCcee-cHHHHHHHhCCceeeehhhHHHHhhhhhhhhc-CCCceE
Q 018790 31 LLCSKFLKLYNR---DGVESI-GLDDAASRLGVERRRIYDVVNILESIGVVARQ-AKNLYS 86 (350)
Q Consensus 31 ~L~~kFl~l~~~---~~~~~I-~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~-~KN~y~ 86 (350)
.+...+.+.+.. .++..+ +..++|++|||.|=-+-..++.|+.-|+|.+. +++.|.
T Consensus 13 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~V 73 (236)
T 3edp_A 13 VIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGVGLYV 73 (236)
T ss_dssp HHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEE
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECCceEEE
Confidence 355666666654 456778 89999999999999999999999999999885 455544
No 193
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=37.70 E-value=14 Score=28.70 Aligned_cols=55 Identities=7% Similarity=0.216 Sum_probs=40.9
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhC----CceeeehhhHHHHhhhhhhhhcC-CCceEEecC
Q 018790 34 SKFLKLYNRDGVESIGLDDAASRLG----VERRRIYDVVNILESIGVVARQA-KNLYSWQGF 90 (350)
Q Consensus 34 ~kFl~l~~~~~~~~I~L~~aA~~Lg----V~RRRIYDIvNVLEslGli~K~~-KN~y~W~G~ 90 (350)
...|.++... +.++..++|+.++ +.+=-+|-+++.|+.-|+|.|.. ...+.+.-.
T Consensus 13 ~~vL~~l~~~--~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~l 72 (123)
T 1okr_A 13 WEVMNIIWMK--KYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSL 72 (123)
T ss_dssp HHHHHHHHHH--SSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEES
T ss_pred HHHHHHHHhC--CCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEe
Confidence 3445555442 3589999999999 67999999999999999999874 234554443
No 194
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=37.67 E-value=29 Score=27.66 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=30.5
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
+++..-..|..-.++++...+-..++++++|++.||.+.-||-
T Consensus 9 ~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~ 51 (199)
T 3on2_A 9 HHGSLRRVLLARAESTLEKDGVDGLSLRQLAREAGVSHAAPSK 51 (199)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTC-----CCC
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHHHH
Confidence 3444556778888888888777789999999999999998883
No 195
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=37.65 E-value=9 Score=32.99 Aligned_cols=41 Identities=17% Similarity=0.367 Sum_probs=34.1
Q ss_pred CCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 26 EKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 26 eKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
+..-..|..-.++++...+-..++++++|++.||.|.-||-
T Consensus 45 ~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~aGvs~~t~Y~ 85 (245)
T 3aqt_A 45 EQTRARLITSARTLMAERGVDNVGIAEITEGANIGTGTFYN 85 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGG
T ss_pred HHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhCCChHHHHH
Confidence 33555677888899988777789999999999999988883
No 196
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=36.77 E-value=15 Score=30.35 Aligned_cols=45 Identities=11% Similarity=0.206 Sum_probs=34.1
Q ss_pred CCCCCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeeh
Q 018790 20 QFYSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIY 65 (350)
Q Consensus 20 ~~~sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIY 65 (350)
....|++..=..|....++++...+ ..++++++|++.||.+.-||
T Consensus 13 ~~~~~~~~~r~~Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY 57 (215)
T 2hku_A 13 ATRESGRQTRDALFTAATELFLEHG-EGVPITQICAAAGAHPNQVT 57 (215)
T ss_dssp -------CHHHHHHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHH
Confidence 3444555666778888899998888 89999999999999999888
No 197
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=36.50 E-value=18 Score=31.02 Aligned_cols=46 Identities=24% Similarity=0.380 Sum_probs=35.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 21 FYSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 21 ~~sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
...|...+-..|..-.++++...+-..++++++|+++||.+.-||-
T Consensus 19 ~~~r~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~ 64 (211)
T 3fiw_A 19 FQGMTKMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYW 64 (211)
T ss_dssp -----CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHT
T ss_pred cccccccCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHH
Confidence 3445556777888889999988777789999999999999988884
No 198
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=36.25 E-value=15 Score=29.18 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=34.1
Q ss_pred CCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeeh
Q 018790 26 EKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIY 65 (350)
Q Consensus 26 eKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIY 65 (350)
+..-..|....++++...+-..++++++|++.||.|.-||
T Consensus 7 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 46 (188)
T 3qkx_A 7 TDLAEQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIY 46 (188)
T ss_dssp HHHHHHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHH
Confidence 3344567888899999988788999999999999999998
No 199
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=35.98 E-value=29 Score=27.88 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCce
Q 018790 29 LGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLY 85 (350)
Q Consensus 29 Lg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y 85 (350)
+..+...+.+++..+ +.|++.++-+.||+.|+..-=|..-|..+|+..|.+-.++
T Consensus 64 ~~~~~~~l~~~~~~~--~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~TrR~gd~R~ 118 (121)
T 2pjp_A 64 IVEFANMIRDLDQEC--GSTCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDHL 118 (121)
T ss_dssp HHHHHHHHHHHHHHH--SSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEETTEEE
T ss_pred HHHHHHHHHHHHHHC--CCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeEeeCCEee
Confidence 444555566666664 5699999999999999999999999999999998865444
No 200
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=35.92 E-value=21 Score=31.45 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=37.3
Q ss_pred CCCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 22 YSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 22 ~sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
..|...+-..|..--++++....-..+++.++|+++||.+.-||=
T Consensus 14 ~~r~~~tr~~Il~AA~~l~~e~G~~~~S~~~IA~~aGvs~~tlY~ 58 (243)
T 2g7l_A 14 PAKPALSRRWIVDTAVALMRAEGLEKVTMRRLAQELDTGPASLYV 58 (243)
T ss_dssp --CCCCCHHHHHHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTT
T ss_pred CCCcccCHHHHHHHHHHHHHhcCchhcCHHHHHHHHCCChhHHHH
Confidence 344556778899999999988877889999999999999988884
No 201
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=34.97 E-value=15 Score=27.72 Aligned_cols=38 Identities=8% Similarity=0.191 Sum_probs=29.0
Q ss_pred CceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEEecC
Q 018790 45 VESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQGF 90 (350)
Q Consensus 45 ~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W~G~ 90 (350)
...+++.++|+-||+.+..+|.+++- ......+.|+|.
T Consensus 14 K~~LTi~EaAeylgIg~~~l~~L~~~--------~~~~~~~~~iG~ 51 (70)
T 1y6u_A 14 RYTLTIEEASKYFRIGENKLRRLAEE--------NKNANWLIMNGN 51 (70)
T ss_dssp SSEEEHHHHHHHTCSCHHHHHHHHHH--------CTTCSSEEEETT
T ss_pred cceeCHHHHHHHHCcCHHHHHHHHHc--------CCCCCcEEEeCC
Confidence 56899999999999999999998642 112345677775
No 202
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=34.65 E-value=28 Score=29.84 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhC-CCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 32 LCSKFLKLYNRD-GVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 32 L~~kFl~l~~~~-~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+-+.+-++-.. ++..+++.++|+++++.++-+..|+..|..-|+|.-.
T Consensus 28 yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~ 77 (159)
T 3lwf_A 28 YGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSI 77 (159)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 344444444333 3457999999999999999999999999999999754
No 203
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=34.23 E-value=22 Score=29.70 Aligned_cols=47 Identities=23% Similarity=0.485 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 32 LCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 32 L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+=++.|.++... ..++..++|++||+.+--+..-++-|+.-|+|.+.
T Consensus 4 ~d~~il~~L~~~--~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQED--STLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTC--SCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHC--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeec
Confidence 345677777764 45899999999999999999999999999999863
No 204
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=34.05 E-value=14 Score=23.84 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=19.6
Q ss_pred ecHHHHHHHhCCceeeehhhHH
Q 018790 48 IGLDDAASRLGVERRRIYDVVN 69 (350)
Q Consensus 48 I~L~~aA~~LgV~RRRIYDIvN 69 (350)
+++.++|..|||.+.-||.+++
T Consensus 22 ~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 22 HPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp CCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCHHHHHHHHCCCHHHHHHHHH
Confidence 7899999999999999987754
No 205
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=33.92 E-value=18 Score=28.79 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=34.1
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
|++..-..|....++++...+-..++++++|++.||.|.-||-
T Consensus 7 ~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 49 (196)
T 3col_A 7 KDMNKQVKIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYL 49 (196)
T ss_dssp ---CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHH
Confidence 3455566788888888888777789999999999999888873
No 206
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=33.64 E-value=15 Score=30.71 Aligned_cols=45 Identities=22% Similarity=0.300 Sum_probs=37.5
Q ss_pred CCCCCCCcHHHHHHHHHHH-HhhCCCceecHHHHHHHhCCceeeeh
Q 018790 21 FYSRKEKSLGLLCSKFLKL-YNRDGVESIGLDDAASRLGVERRRIY 65 (350)
Q Consensus 21 ~~sRkeKSLg~L~~kFl~l-~~~~~~~~I~L~~aA~~LgV~RRRIY 65 (350)
...|..+.-..|..-++++ +...+-..++++++|++-||.|.-||
T Consensus 13 ~~~r~~~tr~~I~~Aa~~lF~~~~g~~~~tv~~Ia~~Agvs~~t~Y 58 (185)
T 3o60_A 13 VDLRTQKTQTKLYTVLERFYVEDRTFESISIKDLCEQARVSRATFY 58 (185)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHhCCCHHHHH
Confidence 3455566777888899999 58888888999999999999988887
No 207
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=33.50 E-value=23 Score=28.36 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=34.5
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeeh
Q 018790 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIY 65 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIY 65 (350)
|++..=..|..-.++++...+-..++++++|++.||.|.-||
T Consensus 8 ~~~~~r~~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y 49 (196)
T 3he0_A 8 PAVDKRDQILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIY 49 (196)
T ss_dssp ---CCHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHH
Confidence 445566778888899998887778999999999999999998
No 208
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=33.27 E-value=29 Score=33.14 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=35.0
Q ss_pred CcHHHHHH------HHHHHHhhCCC-----ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 27 KSLGLLCS------KFLKLYNRDGV-----ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 27 KSLg~L~~------kFl~l~~~~~~-----~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.-||.+.- ..++++..... ..|+|++++...|+. .-||+..|+.+|++...
T Consensus 181 SdLG~~sYr~YW~~~i~~~L~~~~~~~~~~~~isi~~is~~T~i~---~~Dii~tL~~l~~l~~~ 242 (280)
T 2ou2_A 181 SDLGLLSYRSYWSQTILEILMGLKSESGERPQITINEISEITSIK---KEDVISTLQYLNLINYY 242 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-----------CCBHHHHHHHHCBC---HHHHHHHHHHTTCCCBC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcccccCCCCceeHHHHHHHhCCC---HHHHHHHHHHCCcEEEE
Confidence 34666652 24455544333 279999999999995 57999999999999654
No 209
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=33.18 E-value=17 Score=27.32 Aligned_cols=12 Identities=25% Similarity=0.645 Sum_probs=10.6
Q ss_pred chHHHHHHHHHH
Q 018790 322 NEAVNGLFGHYV 333 (350)
Q Consensus 322 n~~l~~lf~hy~ 333 (350)
+|||.||++.||
T Consensus 44 rqALQdLlsEY~ 55 (59)
T 4e18_B 44 RQALQDLLSEYM 55 (59)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 589999999998
No 210
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=33.01 E-value=19 Score=31.33 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=32.9
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
.+++.++|..+++.+=-+.-+++-||.-|+|.|..
T Consensus 62 ~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~ 96 (207)
T 2fxa_A 62 GASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSK 96 (207)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 58999999999999999999999999999999863
No 211
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=32.65 E-value=16 Score=29.49 Aligned_cols=41 Identities=15% Similarity=0.347 Sum_probs=34.7
Q ss_pred CCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 26 EKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 26 eKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
+..-..|....++++...+-..++++++|++.||.+.-||-
T Consensus 16 ~~~r~~Il~aa~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~ 56 (208)
T 3cwr_A 16 AVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAKKTLYR 56 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHhccHHHHHHHhCCCHHHHHH
Confidence 44566788888889988777789999999999999988884
No 212
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=32.52 E-value=16 Score=29.69 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=35.0
Q ss_pred CCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 25 KEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 25 keKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
.+..-..|....++++...+-..++++++|++.||.+.-||-
T Consensus 24 ~~~~r~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 65 (217)
T 3mvp_A 24 SIEKRNKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYA 65 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHH
Confidence 344566788888899988777789999999999999988885
No 213
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=32.26 E-value=28 Score=30.59 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=36.2
Q ss_pred CCCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeeh
Q 018790 22 YSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIY 65 (350)
Q Consensus 22 ~sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIY 65 (350)
..|...+-..|..--++++....-..+++.++|+++||.+--||
T Consensus 24 ~~~~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY 67 (241)
T 2hxi_A 24 AGRRRWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLY 67 (241)
T ss_dssp ----CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHH
Confidence 34555677889999999999888788999999999999999998
No 214
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=32.26 E-value=30 Score=28.08 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=38.4
Q ss_pred HHHHHhhCCCceecHHHHHHHh-----CCceeeehhhHHHHhhhhhhhhcC
Q 018790 36 FLKLYNRDGVESIGLDDAASRL-----GVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~L-----gV~RRRIYDIvNVLEslGli~K~~ 81 (350)
.++++... ...++.+++...| ++.+=-+|-.++.|+..|+|.+..
T Consensus 16 Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~ 65 (131)
T 2o03_A 16 ISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLH 65 (131)
T ss_dssp HHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEE
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEE
Confidence 56667654 4579999999999 889999999999999999999874
No 215
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=32.25 E-value=24 Score=28.86 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=29.2
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+.++..++|+.+++.+=-+--+++-||.-|+|.+.
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr~~ 85 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRDGLVRVM 85 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC--
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 56899999999999999999999999999999544
No 216
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=32.03 E-value=28 Score=28.12 Aligned_cols=47 Identities=11% Similarity=0.106 Sum_probs=38.0
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhC----CceeeehhhHHHHhhhhhhhhcC
Q 018790 34 SKFLKLYNRDGVESIGLDDAASRLG----VERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 34 ~kFl~l~~~~~~~~I~L~~aA~~Lg----V~RRRIYDIvNVLEslGli~K~~ 81 (350)
..+|.++... .+.++..++++.|+ +.+=-+|-+++-||.-|+|.|..
T Consensus 12 ~~vL~~L~~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 12 RAVMDHLWSR-TEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHTC-SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHhc-CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 3456666553 23599999999998 78889999999999999999874
No 217
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=31.98 E-value=33 Score=28.64 Aligned_cols=38 Identities=11% Similarity=0.196 Sum_probs=33.5
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCce
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLY 85 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y 85 (350)
.++..++|..||+.|..+.-+++-|+.-|+|.... +.+
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~-~~i 215 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLDG-REI 215 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEESS-SCE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEecC-CEE
Confidence 46789999999999999999999999999998864 444
No 218
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=31.86 E-value=32 Score=27.94 Aligned_cols=37 Identities=11% Similarity=0.237 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 30 GLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 30 g~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
..|....++++...+-..++++++|++.||.|.-||-
T Consensus 7 ~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 43 (185)
T 2yve_A 7 EMILRTAIDYIGEYSLETLSYDSLAEATGLSKSGLIY 43 (185)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcChhhccHHHHHHHhCCChHHHHH
Confidence 4577888899988887889999999999999988884
No 219
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=31.85 E-value=25 Score=27.96 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=35.8
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
+++..-..|....++++...+-..++++++|++.||.+.-||=
T Consensus 7 ~~~~~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 49 (191)
T 3on4_A 7 NISNTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHY 49 (191)
T ss_dssp CCCCHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhh
Confidence 4455666788888889888777789999999999999988883
No 220
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=31.76 E-value=18 Score=30.56 Aligned_cols=45 Identities=16% Similarity=0.321 Sum_probs=33.8
Q ss_pred CCCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 22 YSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 22 ~sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
..|++..-..|....++++.+.+-..++++++|++.||.|.-||-
T Consensus 25 ~~r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~ 69 (230)
T 2iai_A 25 AKRDTYTPETLLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIYH 69 (230)
T ss_dssp CC----CCSCHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHHHHcCccccCHHHHHHHHCCChhHHHH
Confidence 444455555677888888888777789999999999999888873
No 221
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=31.53 E-value=21 Score=30.61 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=34.0
Q ss_pred CcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 27 KSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 27 KSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
..-..|....++++...+-..+++.+||++.||.+.-||-
T Consensus 43 ~~r~~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~ 82 (255)
T 3g1o_A 43 DRELAILATAENLLEDRPLADISVDDLAKGAGISRPTFYF 82 (255)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCcHHHHHHHhCCCHHHHHH
Confidence 3455788889999988877889999999999999888874
No 222
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=31.51 E-value=17 Score=29.34 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEE
Q 018790 32 LCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSW 87 (350)
Q Consensus 32 L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W 87 (350)
+-++.+..|.. ...++.++|..|++.+..+-+++..|...|.+.+...+.|.=
T Consensus 8 l~~~i~~~~~~---~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~~~ 60 (121)
T 2pjp_A 8 IWQKAEPLFGD---EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYR 60 (121)
T ss_dssp HHHHHGGGCSS---SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEEEE
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCceEC
Confidence 44556666644 346899999999999999999999999999999998875553
No 223
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=31.14 E-value=30 Score=28.24 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=37.3
Q ss_pred HHHHHhhCCCceecHHHHHHHh-----CCceeeehhhHHHHhhhhhhhhcC
Q 018790 36 FLKLYNRDGVESIGLDDAASRL-----GVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~L-----gV~RRRIYDIvNVLEslGli~K~~ 81 (350)
.++++...+...++.+++.+.| ++.+=-+|-.++.|+..|+|.+..
T Consensus 23 Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 73 (136)
T 1mzb_A 23 ILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHN 73 (136)
T ss_dssp HHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEE
Confidence 5666665443578999999998 788889999999999999999874
No 224
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=31.08 E-value=16 Score=33.98 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=35.2
Q ss_pred HHHHhhCCCceecHHHHHHHhCC---ceeeehhhHHHHhhhhhhhhc
Q 018790 37 LKLYNRDGVESIGLDDAASRLGV---ERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 37 l~l~~~~~~~~I~L~~aA~~LgV---~RRRIYDIvNVLEslGli~K~ 80 (350)
++.+... ++.+++.++|.++|+ ..++++-++.+|.++|++.+.
T Consensus 36 f~~L~~~-~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 36 ADAIHNH-GKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp HHHHHHH-TSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred HhHHhhc-CCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 3444432 236999999999999 588999999999999999886
No 225
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=30.99 E-value=27 Score=30.58 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=38.0
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 34 SKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 34 ~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+.|.++. . +.++..++|+.+|+.+--++-.++.|+.-|+|.+.
T Consensus 23 ~~IL~~L~-~--~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 23 RKILKLLR-N--KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHHHT-T--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45666665 2 35999999999999999999999999999999886
No 226
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=30.85 E-value=22 Score=31.62 Aligned_cols=42 Identities=12% Similarity=0.228 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhh
Q 018790 32 LCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILES 73 (350)
Q Consensus 32 L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEs 73 (350)
+..++++++.++....++|.++|+.+|+.+|.|.-++.-.-+
T Consensus 4 ~~~~~~~~i~~~~~~~~~~~~la~~~~~s~~~l~r~f~~~~g 45 (292)
T 1d5y_A 4 IIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTG 45 (292)
T ss_dssp HHHHHHHHHHTTSSSSCCCHHHHTTTSSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 567888999998888999999999999999998888654433
No 227
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=30.84 E-value=37 Score=30.81 Aligned_cols=72 Identities=18% Similarity=0.292 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEEecCCChHHHHHHHH
Q 018790 28 SLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQGFDAIPEALEVLK 101 (350)
Q Consensus 28 SLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W~G~~nI~~tL~~Lk 101 (350)
.-..+..+.+..|...+-..-.+.+++..+++....+-+++..|...|.+.+...+.|.=. +.+....+.|.
T Consensus 138 ~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~~~~~~--~~~~~~~~~l~ 209 (258)
T 1lva_A 138 TQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYWHR--QALGEAREVIK 209 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEEEH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCCeEEcH--HHHHHHHHHHH
Confidence 4556777888888665544568999999999999999999999999999999998866543 23444444443
No 228
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=30.77 E-value=16 Score=34.16 Aligned_cols=34 Identities=21% Similarity=0.286 Sum_probs=31.8
Q ss_pred eecHHHHHHHhCC------ceeeehhhHHHHhhhhhhhhc
Q 018790 47 SIGLDDAASRLGV------ERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 47 ~I~L~~aA~~LgV------~RRRIYDIvNVLEslGli~K~ 80 (350)
.+++.++|.++|+ ..++++-++.+|.++|++++.
T Consensus 62 ~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 62 FMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp CBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 3899999999999 789999999999999999886
No 229
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=30.74 E-value=25 Score=28.85 Aligned_cols=40 Identities=10% Similarity=0.217 Sum_probs=34.0
Q ss_pred CCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeeh
Q 018790 26 EKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIY 65 (350)
Q Consensus 26 eKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIY 65 (350)
+..-..|....++++...+-..++++++|++.||.|.-||
T Consensus 11 ~~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y 50 (189)
T 3vp5_A 11 DEKRNRVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFY 50 (189)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHH
Confidence 3345567888999999888788999999999999998888
No 230
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=30.66 E-value=22 Score=32.12 Aligned_cols=44 Identities=16% Similarity=0.159 Sum_probs=37.8
Q ss_pred CCCcee-cHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceE
Q 018790 43 DGVESI-GLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYS 86 (350)
Q Consensus 43 ~~~~~I-~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~ 86 (350)
.++..+ +-.++|+++||.|=-+-..++.|+.-|+|.+.+++.|.
T Consensus 31 ~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~g~Gt~V 75 (248)
T 3f8m_A 31 RIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVERRGRTTVV 75 (248)
T ss_dssp CTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred CCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCEEEE
Confidence 445667 99999999999999999999999999999996666554
No 231
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=29.97 E-value=25 Score=28.81 Aligned_cols=41 Identities=15% Similarity=0.103 Sum_probs=34.3
Q ss_pred CCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 26 EKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 26 eKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
+..-..|...-++++...+-..++++++|++.||.+.-||-
T Consensus 16 ~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 56 (218)
T 3gzi_A 16 TQNRDKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRY 56 (218)
T ss_dssp HHHHHHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHH
Confidence 33556677888888988887889999999999999988884
No 232
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=29.92 E-value=29 Score=29.87 Aligned_cols=50 Identities=12% Similarity=0.112 Sum_probs=39.8
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEEecCCChHHHHHHHH
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSWQGFDAIPEALEVLK 101 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W~G~~nI~~tL~~Lk 101 (350)
.++..++|..||+.|..+.=+++-|+.-|+|++..+ .+.-. =+..|.++.
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~~~-~i~i~----d~~~L~~~a 226 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKN-KIIVY----NLGELKHLS 226 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSS-EEEES----CHHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeCCC-EEEEe----cHHHHHHHH
Confidence 568999999999999999999999999999998743 44443 244555555
No 233
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=29.86 E-value=20 Score=30.39 Aligned_cols=41 Identities=27% Similarity=0.455 Sum_probs=34.6
Q ss_pred CCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeeh
Q 018790 25 KEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIY 65 (350)
Q Consensus 25 keKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIY 65 (350)
++..-..|..-.++++.+.+-..++++++|++.||.|.-||
T Consensus 11 ~~~~r~~Il~AA~~l~~~~G~~~~tv~~IA~~agvs~~t~Y 51 (231)
T 2qib_A 11 VEERRQQLIGVALDLFSRRSPDEVSIDEIASAAGISRPLVY 51 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCHHHHH
Confidence 33345567888899999888788999999999999999888
No 234
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.78 E-value=98 Score=24.71 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=44.6
Q ss_pred CCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 26 EKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 26 eKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
-+.|..-=...+.++..+...-|+..+++.++++..+-|-=|+-.||.-|+|.+.
T Consensus 32 ~~~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK~V 86 (95)
T 2yu3_A 32 MKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 86 (95)
T ss_dssp CCSCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred hcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEe
Confidence 3455554444556677766677999999999999999999999999999999886
No 235
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=29.71 E-value=17 Score=29.46 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=34.9
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
|++..-..|....++++...+-..++++++|++.||.|.-||-
T Consensus 9 ~~~~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 51 (202)
T 3lwj_A 9 QNKERRQKILTCSLDLFIEKGYYNTSIRDIIALSEVGTGTFYN 51 (202)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHCSCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchhHHH
Confidence 3444556678888889988877789999999999999888873
No 236
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=28.84 E-value=32 Score=28.00 Aligned_cols=42 Identities=17% Similarity=0.404 Sum_probs=35.6
Q ss_pred CCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 25 KEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 25 keKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
++..-..|....++++...+-..++++++|++.||.+.-||-
T Consensus 11 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 52 (217)
T 3nrg_A 11 PEEKRSRLIDVLLDEFAQNDYDSVSINRITERAGIAKGSFYQ 52 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTCCTTGGGG
T ss_pred hHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHH
Confidence 444566788888899988887889999999999999999884
No 237
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=28.70 E-value=28 Score=28.30 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=34.3
Q ss_pred CCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeeh
Q 018790 26 EKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIY 65 (350)
Q Consensus 26 eKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIY 65 (350)
+..-..|....++++...+-..++++++|++.||.|.-||
T Consensus 8 ~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y 47 (193)
T 2dg8_A 8 PQRRERILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMT 47 (193)
T ss_dssp TTHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHH
T ss_pred hhHHHHHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhh
Confidence 3455678888999998887788999999999999998888
No 238
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=28.58 E-value=20 Score=29.12 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=35.1
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 23 SRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 23 sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
.|.+..-..|....++++...+-..++++++|++.||.|.-||-
T Consensus 10 ~~~~~~r~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~ 53 (212)
T 3knw_A 10 KKSEAKRQHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYH 53 (212)
T ss_dssp --CHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHH
Confidence 34445666788888888888777789999999999999988883
No 239
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=28.52 E-value=29 Score=27.42 Aligned_cols=36 Identities=17% Similarity=0.326 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 31 LLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 31 ~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
.|....++++...+-..++++++|++.||.|.-||-
T Consensus 8 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 43 (170)
T 3egq_A 8 RIIEAALRLYMKKPPHEVSIEEIAREAKVSKSLIFY 43 (170)
T ss_dssp HHHHHHHHHHTTSCGGGCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCcHHHHHHHhCCCchhHHH
Confidence 466778888888877789999999999999988884
No 240
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=28.51 E-value=20 Score=31.87 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=36.7
Q ss_pred CCCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 22 YSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 22 ~sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
..|.+..-..|....++++...+-..++++++|++.||.|.-||-
T Consensus 36 ~~r~~~tr~~Il~AA~~lf~e~G~~~~S~~~IA~~AGVs~~tlY~ 80 (273)
T 3c07_A 36 LSKSEQTRALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNAYY 80 (273)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhCCccccCHHHHHHHHCCCHHHHHH
Confidence 334445566788889999998887889999999999999999883
No 241
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=28.33 E-value=22 Score=28.19 Aligned_cols=44 Identities=7% Similarity=0.101 Sum_probs=34.6
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCc----eeeehhhHHHHhhhhhhhhcC
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVE----RRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~----RRRIYDIvNVLEslGli~K~~ 81 (350)
+|..+... +.++..++++.|+.. +=-+|-+++-||.-|+|.|..
T Consensus 40 VL~~L~~~--~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~ 87 (99)
T 2k4b_A 40 VMRVIWSL--GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK 87 (99)
T ss_dssp HHHHHHHH--SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred HHHHHHhC--CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence 44444442 258999999999864 567999999999999999864
No 242
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=27.99 E-value=22 Score=30.00 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=35.9
Q ss_pred CCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhH
Q 018790 25 KEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVV 68 (350)
Q Consensus 25 keKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIv 68 (350)
++..-..|....++++...+-..++++++|++.||.|.-||--+
T Consensus 37 ~~~~r~~Il~AA~~lf~e~G~~~~tv~~IA~~AGvs~~tlY~~F 80 (214)
T 2guh_A 37 AEQSRSLIVDAAGRAFATRPYREITLKDIAEDAGVSAPLIIKYF 80 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHcChhhcCHHHHHHHhCCCHHHHHHHc
Confidence 33345667788889998888788999999999999999888543
No 243
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=27.77 E-value=51 Score=26.85 Aligned_cols=43 Identities=16% Similarity=0.319 Sum_probs=35.0
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
+.+..-..|...-++++.+.+-..++++++|++.||.|.-||-
T Consensus 11 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~ 53 (203)
T 3ccy_A 11 DYENIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYH 53 (203)
T ss_dssp -CTTHHHHHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTT
T ss_pred hhhhHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeee
Confidence 3444556777888889988877889999999999999999883
No 244
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=27.69 E-value=29 Score=26.65 Aligned_cols=33 Identities=9% Similarity=0.186 Sum_probs=30.3
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
..++.++|+.||+.+=-++--+++|+.. +|.+.
T Consensus 41 ~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~ 73 (99)
T 2zkz_A 41 ALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRN 73 (99)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhhe
Confidence 4899999999999999999999999999 99744
No 245
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=27.69 E-value=29 Score=29.54 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=32.9
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
|...+-..|...-++++.... .+++.++|+++||.+--||=
T Consensus 8 ~~~~~r~~Il~aA~~l~~~~G--~~s~~~IA~~aGvs~~tlY~ 48 (213)
T 2g7g_A 8 VARLDRERIAEAALELVDRDG--DFRMPDLARHLNVQVSSIYH 48 (213)
T ss_dssp ---CCHHHHHHHHHHHHHHHS--SCCHHHHHHHTTSCHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHcC--CCCHHHHHHHhCCCHhHHHH
Confidence 445567778888889988776 89999999999999988884
No 246
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=27.66 E-value=42 Score=30.53 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=37.0
Q ss_pred HHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 37 LKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 37 l~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
|..+...+...++..++|+.|++.+--|--+++=||.-|+|.|.
T Consensus 40 L~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~ 83 (250)
T 1p4x_A 40 LTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKV 83 (250)
T ss_dssp HHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEE
T ss_pred HHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEec
Confidence 34444443457999999999999999999999999999999986
No 247
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=27.49 E-value=31 Score=32.48 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=36.5
Q ss_pred HHHHHhhCCCceecHHHHHHHhCC--cee---eehhhHHHHhhhhhhhhc
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGV--ERR---RIYDVVNILESIGVVARQ 80 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV--~RR---RIYDIvNVLEslGli~K~ 80 (350)
..+.+...++..+++.++|.++|+ ..| .++-|+.+|-++|+++..
T Consensus 45 ifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~ 94 (364)
T 3p9c_A 45 LLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCL 94 (364)
T ss_dssp HHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEe
Confidence 444455544457999999999998 666 899999999999999886
No 248
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=27.46 E-value=32 Score=27.84 Aligned_cols=41 Identities=15% Similarity=0.406 Sum_probs=31.4
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeeh
Q 018790 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIY 65 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIY 65 (350)
+.+..-..|...-++++...+-. ++++++|++.||.+.-||
T Consensus 12 ~~~~~r~~Il~aA~~lf~~~G~~-~s~~~IA~~agvs~~tlY 52 (194)
T 2q24_A 12 DAQRNRDKILAAAVRVFSEEGLD-AHLERIAREAGVGSGTLY 52 (194)
T ss_dssp ----CHHHHHHHHHHHHHHHCTT-CCHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcCcC-CCHHHHHHHhCCChHHHH
Confidence 33445567778888888777667 999999999999998888
No 249
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=26.99 E-value=51 Score=27.65 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=33.4
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCC
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKN 83 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN 83 (350)
.++..++|..||+.|..+.=+++-|+.-|+|+...+.
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~~~~ 199 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYISRQGRG 199 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEECSTT
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEcCCc
Confidence 3789999999999999999999999999999887543
No 250
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=26.87 E-value=42 Score=32.15 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=33.9
Q ss_pred CcHHHHHH------HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhh
Q 018790 27 KSLGLLCS------KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVAR 79 (350)
Q Consensus 27 KSLg~L~~------kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K 79 (350)
.-||.+.- ..++++.......|+|++++...|+. .-||+..|+.++++.-
T Consensus 188 SDLG~~sYrsYW~~~il~~L~~~~~~~isi~~is~~T~i~---~~DIi~tL~~l~~l~~ 243 (284)
T 2ozu_A 188 SDLGRLSYMAYWKSVILECLYHQNDKQISIKKLSKLTGIC---PQDITSTLHHLRMLDF 243 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHCBC---HHHHHHHHHHTTCC--
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcEeHHHHHHHhCCC---HHHHHHHHHHCCCEEe
Confidence 35776652 35555655556789999999999985 5799999999999964
No 251
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=26.60 E-value=35 Score=32.75 Aligned_cols=47 Identities=11% Similarity=0.078 Sum_probs=37.0
Q ss_pred HHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCc
Q 018790 36 FLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNL 84 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~ 84 (350)
.++++...| .+.+.+++..+||.++-+.-.++-|+..|++++.+.++
T Consensus 302 ll~~l~~~p--~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~gR 348 (373)
T 2qc0_A 302 LVQVIFEQP--YCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSGK 348 (373)
T ss_dssp HHHHHHHCS--EEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--CC
T ss_pred HHHHHHhCC--cccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEecCCC
Confidence 444444443 57899999999999999999999999999999876443
No 252
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=26.52 E-value=30 Score=28.92 Aligned_cols=45 Identities=18% Similarity=0.386 Sum_probs=34.6
Q ss_pred CCCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 22 YSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 22 ~sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
..|++..-..|..-.++++.+.+-..++++++|++.||.+.-||-
T Consensus 30 ~~~~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~AGvs~~tlY~ 74 (221)
T 3g7r_A 30 ARTPSEARARLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYR 74 (221)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHHHH
T ss_pred cCcchhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHH
Confidence 344455666788888888888777789999999999999888884
No 253
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=26.33 E-value=52 Score=29.28 Aligned_cols=54 Identities=11% Similarity=0.295 Sum_probs=41.1
Q ss_pred HHHHHHHHHhh---CCCcee-cHHHHHHHhCCceeeehhhHHHHhhhhhhhhc-CCCce
Q 018790 32 LCSKFLKLYNR---DGVESI-GLDDAASRLGVERRRIYDVVNILESIGVVARQ-AKNLY 85 (350)
Q Consensus 32 L~~kFl~l~~~---~~~~~I-~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~-~KN~y 85 (350)
+...+.+.+.. .++..+ +..++|+++||.|=-+-..++.|+.-|+|.+. +++.|
T Consensus 10 i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~g~G~~ 68 (239)
T 3bwg_A 10 IATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGSGIF 68 (239)
T ss_dssp HHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeCCceEE
Confidence 34444444433 456778 89999999999999999999999999999875 34443
No 254
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=26.33 E-value=32 Score=27.41 Aligned_cols=43 Identities=16% Similarity=0.324 Sum_probs=33.9
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
|++..-..|...-++++...+-..++++++|++.||.|.-||-
T Consensus 7 ~~~~~r~~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tlY~ 49 (197)
T 3rd3_A 7 SYDDTRQHLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYH 49 (197)
T ss_dssp ---CHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHTT
T ss_pred hhHhHHHHHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhHHH
Confidence 4555666777888888888777789999999999999888884
No 255
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=26.28 E-value=23 Score=28.45 Aligned_cols=39 Identities=10% Similarity=0.264 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 28 SLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 28 SLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
.-..|....++++...+-..+++.++|++.||.+.-||-
T Consensus 15 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 53 (203)
T 3f1b_A 15 REQQMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYL 53 (203)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHH
Confidence 445677888889988777789999999999999988884
No 256
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=26.27 E-value=29 Score=27.68 Aligned_cols=36 Identities=8% Similarity=0.155 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 31 LLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 31 ~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
.|....++++...+-..++++++|++.||.|.-||-
T Consensus 6 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 41 (194)
T 3bqz_B 6 KILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYY 41 (194)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHH
Confidence 466777888888777789999999999999988884
No 257
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=26.27 E-value=50 Score=27.27 Aligned_cols=36 Identities=25% Similarity=0.270 Sum_probs=32.9
Q ss_pred ceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 46 ESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 46 ~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
..++..++|..||+.|.-+.-+++-|+.-|+|....
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 197 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEGVVRLGP 197 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 457899999999999999999999999999998753
No 258
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=26.24 E-value=26 Score=33.49 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=32.8
Q ss_pred CcHHHHHH------HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 27 KSLGLLCS------KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 27 KSLg~L~~------kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.-||.+.- ..++++... .+.|+|++++...|+ +.-||+..|+.+|++...
T Consensus 183 SdLG~~sYr~YW~~~il~~L~~~-~~~isi~~is~~T~i---~~~Dii~tL~~l~~l~~~ 238 (278)
T 2pq8_A 183 SDLGKLSYRSYWSWVLLENLRDF-RGTLSIKDLSQMTSI---TQNDIISTLQSLNMVKYW 238 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC--------CHHHHHHHCB---CHHHHHHHHHHTTCEEC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc-CCCccHHHHHHHhCC---CHHHHHHHHHHCCCEEEe
Confidence 34776663 244555443 358999999999999 478999999999999653
No 259
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=26.11 E-value=39 Score=27.66 Aligned_cols=34 Identities=21% Similarity=0.380 Sum_probs=31.2
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
.+...++|..+++.+=.+--+++-||.-|+|.|.
T Consensus 46 ~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~ 79 (151)
T 4aik_A 46 EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRH 79 (151)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEee
Confidence 3567899999999999999999999999999876
No 260
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=26.02 E-value=56 Score=29.88 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhh---CCCcee-cHHHHHHHhCCceeeehhhHHHHhhhhhhhhc-CCCce
Q 018790 31 LLCSKFLKLYNR---DGVESI-GLDDAASRLGVERRRIYDVVNILESIGVVARQ-AKNLY 85 (350)
Q Consensus 31 ~L~~kFl~l~~~---~~~~~I-~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~-~KN~y 85 (350)
.+...+.+.+.. .++..+ +..++|++|||.|=-+-..++.|+.-|+|.+. +++.|
T Consensus 33 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~G~~ 92 (272)
T 3eet_A 33 RVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRSGSGTY 92 (272)
T ss_dssp HHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC--EE
T ss_pred HHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCceEE
Confidence 455556565544 456677 89999999999999999999999999999775 44444
No 261
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=25.73 E-value=16 Score=29.34 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=33.6
Q ss_pred CCCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 22 YSRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 22 ~sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
..|++..-..|....++++...+-..++++++|++.||.|.-||-
T Consensus 9 ~~~~~~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 53 (191)
T 4aci_A 9 GDKPTNSRQEILEGARRCFAEHGYEGATVRRLEEATGKSRGAIFH 53 (191)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHH
Confidence 345555666788888888887766679999999999999988884
No 262
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=24.90 E-value=72 Score=23.90 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=31.4
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 34 SKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 34 ~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
...+.++... .++.++|.+|||.+.-||-++.-.+......+.
T Consensus 29 ~~~v~~~~~g----~s~~~iA~~~gIs~sTl~rW~k~~~~~~~~~~~ 71 (87)
T 2elh_A 29 IHAIQRIHDG----ESKASVARDIGVPESTLRGWCKNEDKLRFMSRQ 71 (87)
T ss_dssp HHHHHHHHHT----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHCC----CCHHHHHHHHCcCHHHHHHHHHHHHhccccccC
Confidence 3555666421 689999999999999999998877665544443
No 263
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=24.86 E-value=40 Score=27.24 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=29.3
Q ss_pred CCCCcHHHHHHHHHHHH-hhCCCceecHHHHHHHhCCceeeehh
Q 018790 24 RKEKSLGLLCSKFLKLY-NRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~-~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
|++..-..|....++++ ...+-..++++++|++.||.|.-||-
T Consensus 21 ~~~~~r~~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~ 64 (212)
T 3nxc_A 21 AKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYR 64 (212)
T ss_dssp --CTTHHHHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHT
T ss_pred CchHHHHHHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHH
Confidence 55666777888888855 66566789999999999999888884
No 264
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=24.53 E-value=23 Score=28.72 Aligned_cols=42 Identities=17% Similarity=0.206 Sum_probs=34.1
Q ss_pred CCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 25 KEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 25 keKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
++..-..|....++++...+-..++++++|++.||.+.-||-
T Consensus 16 ~~~~r~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~ 57 (212)
T 1pb6_A 16 VSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLY 57 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHH
Confidence 333455677788888888777789999999999999988884
No 265
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=24.52 E-value=21 Score=28.35 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 28 SLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 28 SLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
.-..|....++++...+-..++++++|++.||.|.-||-
T Consensus 9 ~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 47 (194)
T 2g7s_A 9 KADDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHH 47 (194)
T ss_dssp HHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHH
Confidence 344677778888888777789999999999999888873
No 266
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=24.37 E-value=20 Score=28.76 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 28 SLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 28 SLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
.-..|....++++...+-..++++++|++.||.+.-||-
T Consensus 8 ~r~~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~ 46 (199)
T 3qbm_A 8 TRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYR 46 (199)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHHHH
Confidence 344567778888888777789999999999999988884
No 267
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=24.34 E-value=34 Score=27.84 Aligned_cols=43 Identities=19% Similarity=0.306 Sum_probs=35.1
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
|++..-..|..-.++++...+-..++++++|++.||.|.-||-
T Consensus 7 ~~~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 49 (216)
T 3s5r_A 7 TDKNTRELLLDAATTLFAEQGIAATTMAEIAASVGVNPAMIHY 49 (216)
T ss_dssp --CCHHHHHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHHHHH
Confidence 4555667788888899988777789999999999999998884
No 268
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=24.26 E-value=41 Score=29.50 Aligned_cols=43 Identities=12% Similarity=0.268 Sum_probs=36.4
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
|...+-..|..-.++++....-..+++.++|+++||.+--||-
T Consensus 3 r~~~tr~~Il~AA~~l~~~~G~~~~S~r~IA~~aGvs~~tlY~ 45 (234)
T 2opt_A 3 MAPLTQDRIVVTALGILDAEGLDALSMRRLAQELKTGHASLYA 45 (234)
T ss_dssp CCCCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCccccCHHHHHHHHCCChhHHHH
Confidence 4445667788889999988877789999999999999988884
No 269
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=23.88 E-value=43 Score=29.40 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=35.6
Q ss_pred CCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCC
Q 018790 44 GVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAK 82 (350)
Q Consensus 44 ~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~K 82 (350)
....+...++|+.|+|.+--+-.+++-||.-|+|.+...
T Consensus 17 ~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 55 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK 55 (214)
T ss_dssp SCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC
Confidence 356799999999999999999999999999999999853
No 270
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=23.47 E-value=37 Score=28.03 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=34.0
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceE
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYS 86 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~ 86 (350)
.++..++|..||+.|..+.=+++-|+.-|+|+... +.+.
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~~-~~i~ 177 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIATAY-RRVY 177 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEET-TEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC-CEEE
Confidence 47889999999999999999999999999998774 3343
No 271
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=23.42 E-value=36 Score=27.18 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=33.5
Q ss_pred CcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 27 KSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 27 KSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
..-..|....++++...+-..++++++|++.||.|.-||-
T Consensus 8 ~~r~~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~ 47 (206)
T 3dew_A 8 DCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISY 47 (206)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHH
Confidence 3445677888888888777789999999999999988884
No 272
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=23.32 E-value=31 Score=29.57 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=34.3
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
+++..-..|..-.++++...+-..++++++|++.||.|.-||-
T Consensus 20 ~~~~~r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~ 62 (231)
T 2zcx_A 20 AKQQREEAILDAARELGTERGIREITLTDIAATVGMHKSALLR 62 (231)
T ss_dssp TTHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHH
Confidence 3444555677778888888777789999999999999988884
No 273
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=23.30 E-value=25 Score=28.40 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=33.5
Q ss_pred CCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 26 EKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 26 eKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
+..-..|....++++...+-..++++++|++.||.+.-||-
T Consensus 13 ~~~r~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~ 53 (220)
T 3lhq_A 13 LETRQHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYW 53 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceeehh
Confidence 33455677888888888777789999999999999888884
No 274
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.95 E-value=28 Score=29.23 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=38.7
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhh--hcCCCceEEecCCChHH--HHHHHHHhc
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVA--RQAKNLYSWQGFDAIPE--ALEVLKEEG 104 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~--K~~KN~y~W~G~~nI~~--tL~~Lkeeg 104 (350)
.+++.++|..+||..+-|- -.|..|++. +...|-|...+...+.. .|..|++.|
T Consensus 16 ~~~I~evA~~~gvs~~tLR----~Ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G 73 (148)
T 3gpv_A 16 YYTIGQVAKMQHLTISQIR----YYDKQGLFPFLQRNEKGDRIFNEEALKYLEMILCLKNTG 73 (148)
T ss_dssp CBCHHHHHHHTTCCHHHHH----HHHHTTCCTTCEECTTCCEEBCHHHHHHHHHHHHHHTTT
T ss_pred ceeHHHHHHHHCcCHHHHH----HHHHCCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHcC
Confidence 5899999999999987432 337889985 44567888888766653 455565555
No 275
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=22.86 E-value=44 Score=27.22 Aligned_cols=44 Identities=18% Similarity=0.352 Sum_probs=34.7
Q ss_pred CCCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 23 SRKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 23 sRkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
.|++..-..|....++++...+-..++++++|++.||.|.-||-
T Consensus 7 ~~~~~~r~~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~ 50 (216)
T 3f0c_A 7 KNEDGKLELIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYY 50 (216)
T ss_dssp ---CCHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHHHH
Confidence 34455566788888888888777789999999999999888884
No 276
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=22.84 E-value=41 Score=26.11 Aligned_cols=46 Identities=9% Similarity=0.156 Sum_probs=37.1
Q ss_pred HHHHHHHhhCCCceecHHHHHHHhCC----ceeeehhhHHHHhhhhhhhhcC
Q 018790 34 SKFLKLYNRDGVESIGLDDAASRLGV----ERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 34 ~kFl~l~~~~~~~~I~L~~aA~~LgV----~RRRIYDIvNVLEslGli~K~~ 81 (350)
-.++..+...+ .++..++|+.|+. .+--++-+++-||.-|+|.|..
T Consensus 13 ~~vL~~L~~~~--~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 13 WDVMNIIWDKK--SVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHHHHSS--SEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhcC--CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 34566665543 4899999999985 6788999999999999999864
No 277
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=22.70 E-value=53 Score=28.40 Aligned_cols=45 Identities=13% Similarity=0.083 Sum_probs=38.9
Q ss_pred HHHHHhhCCCceecHHHHHHHhC-CceeeehhhHHHHhhhhhhhhc
Q 018790 36 FLKLYNRDGVESIGLDDAASRLG-VERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~Lg-V~RRRIYDIvNVLEslGli~K~ 80 (350)
.+.++..++....++.+++..++ +.+=-||--++.|+..|+|++.
T Consensus 34 IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~ 79 (151)
T 3u1d_A 34 VLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKI 79 (151)
T ss_dssp HHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEe
Confidence 44555667777899999999999 9999999999999999999865
No 278
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=22.40 E-value=17 Score=30.62 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=34.3
Q ss_pred CCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 25 KEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 25 keKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
.+..-..|....++++...+-..++++++|++.||.+.-||-
T Consensus 38 ~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~ 79 (225)
T 2id3_A 38 TARIREAVLLAAGDALAADGFDALDLGEIARRAGVGKTTVYR 79 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHH
Confidence 334555677888888888777789999999999999988884
No 279
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=22.33 E-value=44 Score=27.61 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=33.9
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceE
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYS 86 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~ 86 (350)
.++..++|..||+.|..+.-+++-|+.-|+|+.. ++.+.
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~ 184 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIRSG-YGKIQ 184 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC-CCEEE
Confidence 4788999999999999999999999999999875 44444
No 280
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=22.27 E-value=44 Score=28.34 Aligned_cols=42 Identities=21% Similarity=0.212 Sum_probs=34.4
Q ss_pred CCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 25 KEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 25 keKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
++..=..|..-.++++...+-..+++.++|++.||.+.-||-
T Consensus 5 ~~~~r~~Il~aA~~l~~~~G~~~~tv~~Ia~~agvs~~t~y~ 46 (213)
T 3ni7_A 5 NDPMRDAIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRL 46 (213)
T ss_dssp -CHHHHHHHHHHHHHHHHSCSTTCCHHHHHHHTTSCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHH
Confidence 344455677888899998887889999999999999998883
No 281
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.96 E-value=58 Score=26.75 Aligned_cols=45 Identities=16% Similarity=0.113 Sum_probs=37.4
Q ss_pred HHHHHhhCCCceecHHHHHHHh-----CCceeeehhhHHHHhhhhhhhhcC
Q 018790 36 FLKLYNRDGVESIGLDDAASRL-----GVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~L-----gV~RRRIYDIvNVLEslGli~K~~ 81 (350)
.|+++...+ ..++.+++...| ++.+=-+|-.++.|+..|+|.+..
T Consensus 19 Il~~L~~~~-~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~ 68 (139)
T 3mwm_A 19 VSAALQEVE-EFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLR 68 (139)
T ss_dssp HHHHHTTCS-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHhCC-CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 566676654 479999999988 688889999999999999999864
No 282
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=21.93 E-value=42 Score=26.82 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=32.3
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
|++..-..|....++++... ..++++++|++.||.+.-||-
T Consensus 11 ~~~~~r~~Il~aA~~lf~~~--~~~t~~~Ia~~agvs~~t~Y~ 51 (190)
T 2v57_A 11 ARERTRRAILDAAMLVLADH--PTAALGDIAAAAGVGRSTVHR 51 (190)
T ss_dssp --CHHHHHHHHHHHHHHTTC--TTCCHHHHHHHHTCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHc--CCCCHHHHHHHhCCCHHHHHH
Confidence 34445567788888888877 679999999999999888883
No 283
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.84 E-value=64 Score=26.59 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=37.2
Q ss_pred HHHHHhhCCCceecHHHHHHHh-----CCceeeehhhHHHHhhhhhhhhcCC
Q 018790 36 FLKLYNRDGVESIGLDDAASRL-----GVERRRIYDVVNILESIGVVARQAK 82 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~L-----gV~RRRIYDIvNVLEslGli~K~~K 82 (350)
.++++... ...++..++...| ++.+=-+|-.++.|+..|+|.+..-
T Consensus 27 Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~ 77 (145)
T 2fe3_A 27 ILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTY 77 (145)
T ss_dssp HHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEee
Confidence 55666554 3468999999998 7888899999999999999988743
No 284
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=21.83 E-value=97 Score=29.53 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=41.7
Q ss_pred CCcHHHHHH------HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceEE
Q 018790 26 EKSLGLLCS------KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYSW 87 (350)
Q Consensus 26 eKSLg~L~~------kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~W 87 (350)
=.-||.+.- ..++++... ...|+|++++...|+. .-||+..|+.+|++.......+.-
T Consensus 182 LSdLG~~sY~~YW~~~i~~~L~~~-~~~isi~~is~~Tgi~---~~Dii~tL~~l~~l~~~kg~~~i~ 245 (276)
T 3to7_A 182 LSDLGLLSYRAYWSDTLITLLVEH-QKEITIDEISSMTSMT---TTDILHTAKTLNILRYYKGQHIIF 245 (276)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHT-CSEEEHHHHHHHHCBC---HHHHHHHHHHTTCEEEETTEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhc-CCceeHHHHHHHhCCC---HHHHHHHHHHCCCEEEeCCcEEEE
Confidence 335776652 245555554 4689999999999996 489999999999997764444433
No 285
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=21.82 E-value=51 Score=29.13 Aligned_cols=44 Identities=20% Similarity=0.442 Sum_probs=36.8
Q ss_pred HHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 35 KFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 35 kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
+.|.++.. +.++..++|..||+.+--+|-.++.|+.-|+|.+..
T Consensus 19 ~IL~~L~~---~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~ 62 (202)
T 2p4w_A 19 RILFLLTK---RPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRV 62 (202)
T ss_dssp HHHHHHHH---SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEe
Confidence 34555543 358999999999999999999999999999998753
No 286
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=21.65 E-value=71 Score=26.79 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=32.5
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
.++..++|..||+.|..+.=+++-|+.-|+|+...
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~ 209 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVSP 209 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECS
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEecC
Confidence 47899999999999999999999999999998764
No 287
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=21.58 E-value=92 Score=25.49 Aligned_cols=36 Identities=17% Similarity=0.365 Sum_probs=32.7
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCC
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQAK 82 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~K 82 (350)
.++..++|..||+.|.-+.=+++-|+.-|+|+...+
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~~~ 202 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGK 202 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeCCC
Confidence 578899999999999999999999999999987643
No 288
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=21.56 E-value=94 Score=27.05 Aligned_cols=36 Identities=17% Similarity=0.365 Sum_probs=32.7
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCC
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQAK 82 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~K 82 (350)
.++..++|..||+.|..+.-+++-|+.-|+|+...+
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~~~ 252 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGK 252 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSS
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEcCC
Confidence 568899999999999999999999999999987643
No 289
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=21.43 E-value=25 Score=28.94 Aligned_cols=43 Identities=16% Similarity=0.256 Sum_probs=34.7
Q ss_pred CCCCcHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 24 RKEKSLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 24 RkeKSLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
|.+..-..|....++++...+-..++++++|++.||.+.-||-
T Consensus 20 r~~~~r~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~ 62 (214)
T 2zb9_A 20 PAEEVRAEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYK 62 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHH
Confidence 3344456677888888888777789999999999999988884
No 290
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=21.37 E-value=59 Score=27.67 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=33.5
Q ss_pred CcHHHHHHHHHHHHhhC-CCceecHHHHHHHhCCceeeehh
Q 018790 27 KSLGLLCSKFLKLYNRD-GVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 27 KSLg~L~~kFl~l~~~~-~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
.+-..|....++++... +-..+++.++|+++||.+.-||=
T Consensus 5 ~tr~~Il~aA~~l~~~~~G~~~~s~~~IA~~aGvs~~tlY~ 45 (220)
T 1z0x_A 5 LSKDTIIAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYW 45 (220)
T ss_dssp CSHHHHHHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHT
T ss_pred chHHHHHHHHHHHHHhcCCcccCCHHHHHHHcCCCHHHHHH
Confidence 34556778888999988 77789999999999999888873
No 291
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=21.30 E-value=33 Score=32.13 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=35.2
Q ss_pred HHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhhc
Q 018790 38 KLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVARQ 80 (350)
Q Consensus 38 ~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~ 80 (350)
+.+.+. .+.+++.++|.++|+..+.++-++.+|.++|++.+.
T Consensus 35 d~L~~~-~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~ 76 (353)
T 4a6d_A 35 DLLAEA-PGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVE 76 (353)
T ss_dssp HHHHHS-SSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhcC-CCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 334333 357999999999999999999999999999999764
No 292
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=21.30 E-value=19 Score=31.24 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehh
Q 018790 28 SLGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 28 SLg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
.-..|..-.++++...+-..+++++||++.||.+.-||-
T Consensus 49 tr~~Il~AA~~lf~e~G~~~~Ti~~IA~~AGvs~~t~Y~ 87 (260)
T 2of7_A 49 TREAIRAATYGLIRQQGYEATTVEQIAERAEVSPSTVLR 87 (260)
T ss_dssp HHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccHHHHHHHhCCChHHHHH
Confidence 455677888889988777789999999999998888773
No 293
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=21.19 E-value=26 Score=28.92 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=34.9
Q ss_pred CCCcHHHHHHHHHHHHh-hCCCceecHHHHHHHhCCceeeehh
Q 018790 25 KEKSLGLLCSKFLKLYN-RDGVESIGLDDAASRLGVERRRIYD 66 (350)
Q Consensus 25 keKSLg~L~~kFl~l~~-~~~~~~I~L~~aA~~LgV~RRRIYD 66 (350)
++..-..|..-.++++. ..+-..+++.++|++.||.|.-||-
T Consensus 9 ~~~~r~~Il~aa~~l~~~~~G~~~~ti~~Ia~~Agvs~~t~Y~ 51 (220)
T 3lsj_A 9 KQQTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYR 51 (220)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCGGGCCHHHHHHHHTSCGGGGTT
T ss_pred hHhHHHHHHHHHHHHHHhCCCcccCCHHHHHHHhCCChhHHHH
Confidence 34455567888889998 8777889999999999999998885
No 294
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=20.90 E-value=59 Score=26.92 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=34.0
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcCCCceE
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQAKNLYS 86 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~KN~y~ 86 (350)
.++..++|..||+.|..+.=+++-|+.-|+|+.. ++.+.
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~-~~~i~ 207 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLS-RGKIT 207 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC-CCEEE
Confidence 5788999999999999999999999999999865 44443
No 295
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=20.47 E-value=36 Score=31.98 Aligned_cols=42 Identities=10% Similarity=0.140 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHh
Q 018790 31 LLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILE 72 (350)
Q Consensus 31 ~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLE 72 (350)
....+++.++.++....++++++|+.+|+.+|.|.-.++-.-
T Consensus 305 ~~~~~~~~~i~~~~~~~~~~~~~a~~~~~s~~~l~r~f~~~~ 346 (412)
T 4fe7_A 305 PAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEEV 346 (412)
T ss_dssp HHHHHHHHHHHHHGGGTCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677777777767789999999999999999998877443
No 296
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=20.46 E-value=22 Score=29.64 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeehhhHHHHhhhhhhhh
Q 018790 30 GLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIYDVVNILESIGVVAR 79 (350)
Q Consensus 30 g~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K 79 (350)
..+-.+.+..+.. +..++..++|++|||.|--+...+..|+.-|+|.+
T Consensus 12 d~l~~~Il~~l~~--~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 12 DRIDRNILNELQK--DGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CSHHHHHHHHHHH--CSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred hHHHHHHHHHHHh--CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 3445566665544 34579999999999999999999999999999985
No 297
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=20.29 E-value=37 Score=27.85 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=32.3
Q ss_pred eecHHHHHHHhCCceeeehhhHHHHhhhhhhhhcC
Q 018790 47 SIGLDDAASRLGVERRRIYDVVNILESIGVVARQA 81 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RRRIYDIvNVLEslGli~K~~ 81 (350)
.++..++|..||+.|..+.=+++-|+.-|+|++..
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~~ 198 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKG 198 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEecC
Confidence 47889999999999999999999999999998764
No 298
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=20.20 E-value=50 Score=28.31 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=33.4
Q ss_pred HHHHHhhCCCceecHHHHHHHhC--------------CceeeehhhHHHHhhhhhhhhcCC
Q 018790 36 FLKLYNRDGVESIGLDDAASRLG--------------VERRRIYDVVNILESIGVVARQAK 82 (350)
Q Consensus 36 Fl~l~~~~~~~~I~L~~aA~~Lg--------------V~RRRIYDIvNVLEslGli~K~~K 82 (350)
+...+...+ ....++|..|| |.|=-|-.++..||..|+|++..+
T Consensus 59 lr~~i~~g~---~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~ 116 (150)
T 2v7f_A 59 LRRVYLDGP---VGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPG 116 (150)
T ss_dssp HHHHHHHCS---BCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHhCC---CCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCC
Confidence 334444443 34499999999 766669999999999999998643
No 299
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=20.18 E-value=38 Score=28.94 Aligned_cols=36 Identities=8% Similarity=0.253 Sum_probs=32.6
Q ss_pred eecHHHHHHHhCCcee-eehhhHHHHhhhhhhhhcCC
Q 018790 47 SIGLDDAASRLGVERR-RIYDVVNILESIGVVARQAK 82 (350)
Q Consensus 47 ~I~L~~aA~~LgV~RR-RIYDIvNVLEslGli~K~~K 82 (350)
.++..++|..||+.|| .+.=+++-|+.-|+|+...+
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~~~ 205 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNS 205 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEecCC
Confidence 4778999999999998 99999999999999988743
No 300
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=20.00 E-value=32 Score=28.19 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhhCCCceecHHHHHHHhCCceeeeh
Q 018790 29 LGLLCSKFLKLYNRDGVESIGLDDAASRLGVERRRIY 65 (350)
Q Consensus 29 Lg~L~~kFl~l~~~~~~~~I~L~~aA~~LgV~RRRIY 65 (350)
=..|...-++++...+-..++++++|++.||.|.-||
T Consensus 16 r~~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY 52 (204)
T 2ibd_A 16 RTELLDIAATLFAERGLRATTVRDIADAAGILSGSLY 52 (204)
T ss_dssp HHHHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHcCchhcCHHHHHHHhCCCchhHH
Confidence 3456677778887777778999999999999988888
Done!