Query 018792
Match_columns 350
No_of_seqs 362 out of 2727
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 04:04:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02113 putative hydrolase; P 100.0 2.4E-42 5.1E-47 312.9 27.9 251 68-348 1-252 (252)
2 PRK05184 pyrroloquinoline quin 100.0 3.9E-40 8.4E-45 304.5 24.5 259 68-348 1-302 (302)
3 TIGR02108 PQQ_syn_pqqB coenzym 100.0 7.5E-39 1.6E-43 294.8 23.9 256 69-348 1-302 (302)
4 PRK11244 phnP carbon-phosphoru 100.0 3.2E-38 7E-43 285.4 24.5 240 68-348 1-250 (250)
5 TIGR02649 true_RNase_BN ribonu 100.0 9.5E-36 2.1E-40 276.5 24.1 241 70-348 1-303 (303)
6 TIGR02651 RNase_Z ribonuclease 100.0 3E-35 6.6E-40 272.9 23.0 236 69-348 1-299 (299)
7 TIGR03307 PhnP phosphonate met 100.0 5.1E-33 1.1E-37 249.6 22.3 229 79-346 2-238 (238)
8 COG1234 ElaC Metal-dependent h 100.0 1.3E-32 2.8E-37 252.5 23.2 249 67-348 1-291 (292)
9 PRK00055 ribonuclease Z; Revie 100.0 6.6E-32 1.4E-36 246.8 19.0 246 67-349 1-267 (270)
10 KOG2121 Predicted metal-depend 100.0 2.8E-32 6E-37 264.4 5.9 246 66-348 441-715 (746)
11 PRK02126 ribonuclease Z; Provi 99.9 6.7E-26 1.5E-30 211.5 22.4 199 112-320 17-320 (334)
12 PRK00685 metal-dependent hydro 99.9 7.8E-24 1.7E-28 188.8 19.7 204 112-348 9-228 (228)
13 PRK04286 hypothetical protein; 99.9 1.9E-23 4.2E-28 192.9 16.2 245 68-347 1-283 (298)
14 TIGR02650 RNase_Z_T_toga ribon 99.9 5.8E-23 1.3E-27 183.7 15.4 199 124-334 18-265 (277)
15 COG1235 PhnP Metal-dependent h 99.9 1.5E-22 3.3E-27 184.7 17.8 228 66-324 2-246 (269)
16 PF12706 Lactamase_B_2: Beta-l 99.9 4.1E-22 8.9E-27 172.8 16.6 174 125-313 1-194 (194)
17 TIGR00649 MG423 conserved hypo 99.8 9.2E-19 2E-23 169.9 20.1 208 109-339 12-249 (422)
18 PRK11709 putative L-ascorbate 99.8 4.4E-18 9.4E-23 159.8 22.0 155 147-317 106-287 (355)
19 TIGR03675 arCOG00543 arCOG0054 99.8 5.1E-18 1.1E-22 170.3 22.5 177 111-296 188-387 (630)
20 smart00849 Lactamase_B Metallo 99.7 1.4E-16 3.1E-21 136.1 15.0 142 108-264 3-148 (183)
21 COG1782 Predicted metal-depend 99.7 6.8E-16 1.5E-20 144.7 17.0 229 110-348 193-451 (637)
22 COG1236 YSH1 Predicted exonucl 99.6 1.6E-14 3.4E-19 139.6 18.9 175 111-299 14-204 (427)
23 COG0595 mRNA degradation ribon 99.6 3.3E-14 7.2E-19 139.4 16.6 207 109-339 20-257 (555)
24 PRK11921 metallo-beta-lactamas 99.5 5.9E-14 1.3E-18 135.0 13.9 126 110-259 32-163 (394)
25 TIGR03413 GSH_gloB hydroxyacyl 99.5 1.6E-13 3.6E-18 123.7 14.9 119 110-262 9-130 (248)
26 TIGR00361 ComEC_Rec2 DNA inter 99.5 4.5E-13 9.7E-18 136.8 19.9 199 66-337 438-655 (662)
27 PRK11539 ComEC family competen 99.5 4.6E-13 1E-17 138.5 18.8 205 64-344 497-721 (755)
28 PF02112 PDEase_II: cAMP phosp 99.5 1.2E-12 2.5E-17 121.3 19.4 233 109-343 15-335 (335)
29 COG2220 Predicted Zn-dependent 99.5 2.4E-12 5.3E-17 116.9 20.3 212 112-347 15-249 (258)
30 KOG1136 Predicted cleavage and 99.5 9.7E-13 2.1E-17 118.0 16.6 179 66-285 2-209 (501)
31 COG2333 ComEC Predicted hydrol 99.5 3.1E-12 6.7E-17 116.5 19.3 194 112-336 55-262 (293)
32 PF13483 Lactamase_B_3: Beta-l 99.5 8E-13 1.7E-17 111.6 14.1 146 111-312 7-163 (163)
33 PRK05452 anaerobic nitric oxid 99.5 4.5E-13 9.8E-18 131.4 13.7 126 110-259 34-167 (479)
34 PF00753 Lactamase_B: Metallo- 99.5 7.2E-14 1.6E-18 119.5 7.1 184 109-312 4-194 (194)
35 PRK10241 hydroxyacylglutathion 99.5 8.7E-13 1.9E-17 119.1 13.7 119 111-262 12-131 (251)
36 PLN02398 hydroxyacylglutathion 99.5 6.5E-13 1.4E-17 123.2 12.3 121 111-262 87-210 (329)
37 COG1237 Metal-dependent hydrol 99.4 1.3E-11 2.9E-16 108.3 18.4 75 109-191 20-96 (259)
38 PLN02469 hydroxyacylglutathion 99.4 3.5E-12 7.7E-17 115.4 12.9 118 111-261 12-138 (258)
39 COG0426 FpaA Uncharacterized f 99.4 6.4E-11 1.4E-15 110.6 18.7 127 110-260 35-167 (388)
40 PLN02962 hydroxyacylglutathion 99.3 2E-11 4.3E-16 109.8 14.4 122 111-261 23-153 (251)
41 COG0491 GloB Zn-dependent hydr 99.3 9.8E-12 2.1E-16 111.3 11.7 138 111-262 25-171 (252)
42 KOG1137 mRNA cleavage and poly 99.3 2.5E-11 5.4E-16 115.3 10.9 187 65-290 11-217 (668)
43 COG2248 Predicted hydrolase (m 99.2 4.9E-10 1.1E-14 97.3 12.1 220 112-342 16-277 (304)
44 KOG0813 Glyoxylase [General fu 99.1 8.1E-10 1.8E-14 98.1 10.8 121 110-260 12-141 (265)
45 COG5212 PDE1 Low-affinity cAMP 99.0 1.1E-08 2.5E-13 89.7 13.4 195 149-345 111-353 (356)
46 KOG1361 Predicted hydrolase in 98.7 2.3E-07 5E-12 88.9 12.0 188 124-339 89-291 (481)
47 KOG1135 mRNA cleavage and poly 98.6 6E-07 1.3E-11 88.0 12.4 162 111-282 15-200 (764)
48 KOG3798 Predicted Zn-dependent 98.6 1E-06 2.3E-11 76.8 12.6 204 110-335 87-325 (343)
49 KOG0814 Glyoxylase [General fu 98.6 3E-07 6.6E-12 75.7 8.8 117 111-259 21-141 (237)
50 PF14597 Lactamase_B_5: Metall 98.4 6.9E-06 1.5E-10 68.5 12.4 167 112-330 24-196 (199)
51 COG2015 Alkyl sulfatase and re 98.0 3.3E-05 7.2E-10 73.4 9.9 77 112-192 127-206 (655)
52 PF13691 Lactamase_B_4: tRNase 97.6 0.00023 5E-09 49.4 5.8 49 112-166 13-63 (63)
53 KOG4736 Uncharacterized conser 95.9 0.015 3.2E-07 52.5 5.4 45 122-171 102-146 (302)
54 KOG3592 Microtubule-associated 89.8 0.22 4.9E-06 50.2 2.5 52 112-172 49-103 (934)
55 PF07521 RMMBL: RNA-metabolisi 88.6 0.46 9.9E-06 30.2 2.5 28 287-314 14-41 (43)
56 KOG1137 mRNA cleavage and poly 83.7 24 0.00051 35.2 12.3 80 112-196 165-255 (668)
57 TIGR00649 MG423 conserved hypo 80.8 3.1 6.7E-05 40.5 5.5 58 287-349 358-418 (422)
58 TIGR03675 arCOG00543 arCOG0054 66.5 15 0.00031 37.9 6.3 57 287-348 570-629 (630)
59 KOG1138 Predicted cleavage and 64.7 17 0.00036 35.8 5.9 147 124-280 73-266 (653)
60 KOG2121 Predicted metal-depend 55.2 10 0.00022 38.9 2.8 72 123-196 72-145 (746)
61 COG0595 mRNA degradation ribon 39.7 71 0.0015 32.4 6.1 93 252-349 329-428 (555)
62 PF08915 tRNA-Thr_ED: Archaea- 32.1 1.7E+02 0.0036 23.8 5.9 48 293-340 60-114 (138)
63 cd07186 CofD_like LPPG:FO 2-ph 31.1 61 0.0013 30.1 3.7 62 250-312 160-223 (303)
64 PF02593 dTMP_synthase: Thymid 30.6 2.2E+02 0.0048 25.1 6.9 68 263-341 42-110 (217)
65 KOG1136 Predicted cleavage and 27.7 2E+02 0.0042 27.2 6.3 56 288-348 389-445 (501)
66 PF09587 PGA_cap: Bacterial ca 26.2 3E+02 0.0065 24.4 7.4 59 252-310 1-81 (250)
67 PF07522 DRMBL: DNA repair met 24.5 75 0.0016 24.4 2.7 24 288-311 82-105 (110)
68 TIGR01826 CofD_related conserv 23.7 1.2E+02 0.0026 28.2 4.3 64 250-314 150-214 (310)
69 COG1911 RPL30 Ribosomal protei 21.4 3.2E+02 0.0069 20.7 5.3 53 291-348 22-74 (100)
70 TIGR03682 arCOG04112 arCOG0411 21.3 4.3E+02 0.0094 24.5 7.5 42 296-340 88-129 (308)
71 cd07187 YvcK_like family of mo 21.3 1.3E+02 0.0028 28.0 4.0 66 249-315 152-218 (308)
72 PF01120 Alpha_L_fucos: Alpha- 20.5 2E+02 0.0043 27.2 5.2 55 288-342 88-159 (346)
73 PF14572 Pribosyl_synth: Phosp 20.1 72 0.0016 27.3 1.9 40 112-162 85-124 (184)
No 1
>PRK02113 putative hydrolase; Provisional
Probab=100.00 E-value=2.4e-42 Score=312.86 Aligned_cols=251 Identities=38% Similarity=0.652 Sum_probs=202.6
Q ss_pred eEEEEEeccCCCCcCccCccCCCCCCCCCCccccCCCCCCccccceEEEEecCCCCCceEEEecCcchHHHHHhhCCcCC
Q 018792 68 SEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYG 147 (350)
Q Consensus 68 ~~i~~LGtG~~~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~ 147 (350)
|+++|||||++.|+|.++| .|++|..++ +++.|+++|++|+. ++..||||||++...++.+ .+
T Consensus 1 m~~~~lGtg~~~g~P~~~c------~c~~C~~~~---~~~~R~~~s~li~~----~~~~iLiD~G~g~~~~l~~----~~ 63 (252)
T PRK02113 1 MKIRILGSGTSTGVPEIGC------TCPVCTSKD---PRDNRLRTSALVET----EGARILIDCGPDFREQMLR----LP 63 (252)
T ss_pred CEEEEEEeCCCCCeecCCC------CCccCCCCC---CCCcceeeEEEEEE----CCeEEEEECCchHHHHHHh----cC
Confidence 7999999999999999999 999999974 56889999999995 6789999999998777655 25
Q ss_pred CCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhHHHHHHhccccccccCCCCCCcccceeeEEec-CcceE
Q 018792 148 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFT 226 (350)
Q Consensus 148 ~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~ 226 (350)
+.+||+|||||.|.||++|++.+..+. ...+++||+++.+.+.+.....+.+... .+++ ....+++.++ ++.++
T Consensus 64 ~~~id~I~lTH~H~DH~~gl~~l~~~~--~~~~~~i~~~~~~~~~l~~~~~~~~~~~-~~~~--~~~~~~~~~~~g~~~~ 138 (252)
T PRK02113 64 FGKIDAVLITHEHYDHVGGLDDLRPFC--RFGEVPIYAEQYVAERLRSRMPYCFVEH-SYPG--VPNIPLREIEPDRPFL 138 (252)
T ss_pred ccccCEEEECCCChhhhCCHHHHHHhc--cCCCceEEECHHHHHHHHhhCCeeeccC-CCCC--CcceeeEEcCCCCCEE
Confidence 679999999999999999999886542 2347899999999888876543322111 1111 1234566665 47899
Q ss_pred eCCEEEEEEEcccCCCccEEEEEECcEEEeCCCCCCCcchhcccCCCCEEEEcccCCCCCCCCCCCHHHHHHHHHHhCCC
Q 018792 227 VQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPK 306 (350)
Q Consensus 227 ~~~~~v~~~~~~H~~g~~s~g~~i~~i~ysGDt~~~~~~~~~~~~~~dlLi~e~~~~~~~~~~H~~~~~~~~~~~~~~~~ 306 (350)
+++++|+++++.|+.. +++||++++++|+||+.+.++...+.++++|+||+|++.. ....+|++++++++++++++++
T Consensus 139 ~~~~~i~~~~~~H~~~-~~~gy~i~~i~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~-~~~~~H~t~~~a~~~~~~~~~k 216 (252)
T PRK02113 139 VNHTEVTPLRVMHGKL-PILGYRIGKMAYITDMLTMPEEEYEQLQGIDVLVMNALRI-APHPTHQSLEEALENIKRIGAK 216 (252)
T ss_pred ECCeEEEEEEecCCCc-cEEEEEeCCEEEccCCCCCCHHHHHHhcCCCEEEEhhhcC-CCCCCcCCHHHHHHHHHHhCCC
Confidence 9999999999999753 7899999999999999988777888899999999999873 4567899999999999999999
Q ss_pred eEEEEEeecCCChhhHHHHHHHhhhhCCCcEEEcccCeEEEe
Q 018792 307 RTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 348 (350)
Q Consensus 307 ~~vltH~~~~~~~~~~~~~l~~~~~~~~~~v~ia~DGm~i~l 348 (350)
+++++|+++.+.. .+ ++.+....++.+|+|||++++
T Consensus 217 ~l~l~H~s~~~~~---~~---~~~~~~~~~~~~A~Dg~~~~~ 252 (252)
T PRK02113 217 ETYLIHMSHHIGL---HA---DVEKELPPHVHFAYDGLEIIF 252 (252)
T ss_pred EEEEEcccccchh---HH---HHHHhCCCCceeccCceEEeC
Confidence 9999999987642 12 223334446899999999975
No 2
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=100.00 E-value=3.9e-40 Score=304.51 Aligned_cols=259 Identities=19% Similarity=0.320 Sum_probs=194.2
Q ss_pred eEEEEEeccCCCCcCccCccCCCCCCCCCCccccCCCC-CCccccceEEEEecCCCCCceEEEecCcchHHHHHhh--C-
Q 018792 68 SEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGN-KNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRW--F- 143 (350)
Q Consensus 68 ~~i~~LGtG~~~g~P~~~~~~~~~~~c~~c~~~~~~~~-~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~--l- 143 (350)
|||+|||||++.|+|.++| +|++|..|+..+. .+.|.++|++|+. .++..||||||+++..++.+. +
T Consensus 1 m~lt~LGtg~~~g~P~~~C------~C~~C~~ar~~~~~~~~R~~ss~li~~---~g~~~iLiD~G~g~~~ql~~~~~~~ 71 (302)
T PRK05184 1 MRIIVLGSAAGGGFPQWNC------NCPNCRGARAGTIRAKPRTQSSIAVSA---DGEDWVLLNASPDIRQQIQATPALQ 71 (302)
T ss_pred CEEEEEEecCCCCCCcCCC------CchhchhhhcCCCcCCcccccEEEEEc---CCCEEEEEECChhHHHHHHhchhcC
Confidence 8999999999999999999 9999999997543 5889999999984 233569999999999888774 1
Q ss_pred --CcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhHHHHHHhccccccccCCCCCCcccceeeEEec
Q 018792 144 --PAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID 221 (350)
Q Consensus 144 --~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 221 (350)
.+..+.+||+|||||.|+||+.|++.|.. ..+++||+++.+.+.+.+.+++ +... . ....++++.+.
T Consensus 72 ~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~-----~~~l~Vyg~~~~~~~l~~~~~~-f~~~----~-~~~~~~~~~i~ 140 (302)
T PRK05184 72 PARGLRDTPIAAVVLTDGQIDHTTGLLTLRE-----GQPFPVYATPAVLEDLSTGFPI-FNVL----D-HYGGVQRRPIA 140 (302)
T ss_pred ccccCCcccccEEEEeCCchhhhhChHhhcc-----CCCeEEEeCHHHHHHHHhcCCc-cccc----c-cccceeeEEec
Confidence 12345689999999999999999988743 3579999999999888764332 1110 0 01234555665
Q ss_pred -CcceEeC---CEEEEEEEcccCC-----------CccEEEEEEC------cEEEeCCCCCCCcchhcccCCCCEEEEcc
Q 018792 222 -EEPFTVQ---DLKITPLPVWHGA-----------GYRSLGFRFG------NICYISDVSEIPEETYPFLQDCEILIMDA 280 (350)
Q Consensus 222 -~~~~~~~---~~~v~~~~~~H~~-----------g~~s~g~~i~------~i~ysGDt~~~~~~~~~~~~~~dlLi~e~ 280 (350)
++.++++ +++|+++++.|.. ...++||+|+ +++|++|+...+++++++++++|+||+||
T Consensus 141 ~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~~~~~~~~~~~~~gaDlli~da 220 (302)
T PRK05184 141 LDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGLAEVTDALRARLAGADCVLFDG 220 (302)
T ss_pred CCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEECCCCCCCHHHHHHHhcCCEEEEeC
Confidence 4678886 8999999998751 1269999993 79999888666788999999999999999
Q ss_pred cCCCC-------------CCCCCCCHH---HHHHHHHHhCCCeEEEEEeecCCChhhHHHHHHHhhhhCCCcEEEcccCe
Q 018792 281 LRPDR-------------SSSTHFGLP---RALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGL 344 (350)
Q Consensus 281 ~~~~~-------------~~~~H~~~~---~~~~~~~~~~~~~~vltH~~~~~~~~~~~~~l~~~~~~~~~~v~ia~DGm 344 (350)
++... ...+|++.+ ++++.+++.++++++++|++|..+.........+..+.. ++.+|||||
T Consensus 221 ~~~~~~~~~~~g~~~~~~~~~~H~~~~~~~~~l~~~~~~~~k~l~ltHl~h~~~~~~~~~~~~~~~~~~--~~~~A~DGm 298 (302)
T PRK05184 221 TLWTDDEMIRAGVGTKTGRRMGHLPQSGPGGMIAALARLPIARKILIHINNTNPILDEDSPERAELEAA--GIEVAHDGM 298 (302)
T ss_pred CCCcCHHHHhcccCccccccCCCCCCCChHHHHHHhhcCCCCcEEEEEcCCCChhhccCCHHHHHHHhC--CCEEccCCc
Confidence 85221 235788754 578888888899999999998653211000112222223 589999999
Q ss_pred EEEe
Q 018792 345 RVPV 348 (350)
Q Consensus 345 ~i~l 348 (350)
+|++
T Consensus 299 ~i~l 302 (302)
T PRK05184 299 EIEL 302 (302)
T ss_pred EEeC
Confidence 9975
No 3
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=100.00 E-value=7.5e-39 Score=294.80 Aligned_cols=256 Identities=19% Similarity=0.328 Sum_probs=190.1
Q ss_pred EEEEEeccCCCCcCccCccCCCCCCCCCCccccCCC-CCCccccceEEEEecCCCCCceEEEecCcchHHHHHhhCC---
Q 018792 69 EIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPG-NKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFP--- 144 (350)
Q Consensus 69 ~i~~LGtG~~~g~P~~~~~~~~~~~c~~c~~~~~~~-~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~--- 144 (350)
+|+|||||++.|+|+++| +|++|..++..+ ..+.|.++|++|+. +++.+||||||++++.++.+.-+
T Consensus 1 ~~~~LGtg~s~G~P~~~C------~C~~C~~a~~~~~~~~~R~rss~ll~~---~g~~~iLID~Gpd~r~ql~~~~~~~~ 71 (302)
T TIGR02108 1 HIVVLGSAAGGGFPQWNC------NCPNCRGARAGTIGAKARTQSSIAVSA---DGERWVLLNASPDIRQQIQATPALHP 71 (302)
T ss_pred CEEEEEecCCCCCCcCCC------CChhhHHHhcCCCCCccccccEEEEEe---CCCEEEEEECCHHHHHHHHhCccccc
Confidence 489999999999999999 999999998643 45689999999974 35679999999999988876411
Q ss_pred --cCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhHHHHHHhccccccccCCCCCCcccceeeEEec-
Q 018792 145 --AYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID- 221 (350)
Q Consensus 145 --~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~- 221 (350)
+..+.+||+|||||.|.||+.||..|+. +.+++||+++.+++.+++ ++ .+... + ...++++.+.
T Consensus 72 ~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~-----~~~lpVya~~~t~~~L~~-~~-~~~~~---~---~~~~~~~~i~~ 138 (302)
T TIGR02108 72 QRGLRHTPIAGVVLTDGEIDHTTGLLTLRE-----GQPFTLYATEMVLQDLSD-NP-IFNVL---D---HWNVRRQPIAL 138 (302)
T ss_pred ccCCCcccCCEEEEeCCCcchhhCHHHHcC-----CCCceEEECHHHHHHHHh-CC-Ccccc---c---hhhccceEecC
Confidence 2446899999999999999999998853 347999999999999875 32 11110 0 0112333333
Q ss_pred CcceEe-----CCEEEEEEEcccC----------CC--ccEEEEEEC------cEEEeCCCCCCCcchhcccCCCCEEEE
Q 018792 222 EEPFTV-----QDLKITPLPVWHG----------AG--YRSLGFRFG------NICYISDVSEIPEETYPFLQDCEILIM 278 (350)
Q Consensus 222 ~~~~~~-----~~~~v~~~~~~H~----------~g--~~s~g~~i~------~i~ysGDt~~~~~~~~~~~~~~dlLi~ 278 (350)
++.+.+ ++++|+++++.|+ .. .+++||+|+ +++|++|++..+++++++++++|+||+
T Consensus 139 ~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~g~~~~y~tD~g~~~~~~~~~l~~~d~lii 218 (302)
T TIGR02108 139 NEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTTGKRLFYIPGCAEITDDLKARMAGADLVFF 218 (302)
T ss_pred CCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCCCCcEEEEECCCCCCCHHHHHHHhCCCEEEE
Confidence 345554 3599999999943 11 278999996 499999999888899999999999999
Q ss_pred cccC-CC------------CCCCCCCCHH---HHHHHHHHhCCCeEEEEEeecCCChhhHHHHHHHhhhhCCCcEEEccc
Q 018792 279 DALR-PD------------RSSSTHFGLP---RALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYD 342 (350)
Q Consensus 279 e~~~-~~------------~~~~~H~~~~---~~~~~~~~~~~~~~vltH~~~~~~~~~~~~~l~~~~~~~~~~v~ia~D 342 (350)
|+++ .+ ....+|++.. ++++.+.+.++++++++|++|......-.....+..... ++.+|||
T Consensus 219 da~~~~d~e~l~~g~ypri~~~~gHls~~~~~~al~~~~~~~~~~~~l~Hl~h~~~~~~~~~~~~~~~~~~--~~~~ayD 296 (302)
T TIGR02108 219 DGTLWRDDEMIRAGVGTKTGRRMGHVSMSGEGGSLAVLADLEIARKVLIHINNTNPILDEDSPERAEVEAA--GWEVAYD 296 (302)
T ss_pred eCCCCCcHHHHhcCCCCCcCCCCCCCCccchHHHHHHhhcCCCCcEEEEecCCCCcCCCCCCHHHHHHHHc--CCEEecC
Confidence 9984 32 1345677665 677777778899999999999763100000111222222 5899999
Q ss_pred CeEEEe
Q 018792 343 GLRVPV 348 (350)
Q Consensus 343 Gm~i~l 348 (350)
||+|++
T Consensus 297 G~~~~l 302 (302)
T TIGR02108 297 GMEIVL 302 (302)
T ss_pred CcEEeC
Confidence 999975
No 4
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=100.00 E-value=3.2e-38 Score=285.38 Aligned_cols=240 Identities=28% Similarity=0.533 Sum_probs=184.9
Q ss_pred eEEEEEeccCCCCcCccCccCCCCCCCCCCccccCCCCCCccccceEEEEecCCCCCceEEEecCcchHHHHHhhCCcCC
Q 018792 68 SEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYG 147 (350)
Q Consensus 68 ~~i~~LGtG~~~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~ 147 (350)
|||||||||++.|+|.++| +|+.|+.|++.. .+.|+.+|++|+. ++..||||||.+. +.+ ...
T Consensus 1 m~~~~lGs~~~~~~p~~~c------~c~~c~~~~~~p-~~~r~~~s~li~~----~~~~iLiD~G~~~---~~~---~~~ 63 (250)
T PRK11244 1 MRLTLLGTGGAQGVPVFGC------ECAACARARRDP-AYRRRPCSALIEF----NGARTLIDAGLPD---LAE---RFP 63 (250)
T ss_pred CEEEEEeccCCCCccCCCc------cchhhhhhhcCC-CCCcceeEEEEEE----CCCEEEEECCChH---Hhh---cCC
Confidence 8999999999999999999 999999998733 5688999999995 6789999999653 222 244
Q ss_pred CCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhHHHHHHhccccccccCCCCCCcccceee-EEe-cCcce
Q 018792 148 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQF-NII-DEEPF 225 (350)
Q Consensus 148 ~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~i-~~~~~ 225 (350)
+.+||+|||||.|.||++|+..+... ..++++||+++..... .....+ ++ ..++ ..+ +++.+
T Consensus 64 ~~~i~~i~iTH~H~DHi~gl~~l~~~---~~~~i~i~~~~~~~~~-~~~~~~--------~~----~~~~~~~l~~~~~~ 127 (250)
T PRK11244 64 PGSLQQILLTHYHMDHVQGLFPLRWG---VGDPIPVYGPPDPEGC-DDLFKH--------PG----ILDFSHPLEPFEPF 127 (250)
T ss_pred cccCCEEEEccCchhhhccHHHHHhh---cCCceeEEeCCchhhH-HHHhcC--------cc----ccccccccCCCCCe
Confidence 67999999999999999999776431 2356899998865322 111110 00 0111 123 34788
Q ss_pred EeCCEEEEEEEcccCCCccEEEEEEC----cEEEeCCCCCCCcchhccc--CCCCEEEEcccCCCC--CCCCCCCHHHHH
Q 018792 226 TVQDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFL--QDCEILIMDALRPDR--SSSTHFGLPRAL 297 (350)
Q Consensus 226 ~~~~~~v~~~~~~H~~g~~s~g~~i~----~i~ysGDt~~~~~~~~~~~--~~~dlLi~e~~~~~~--~~~~H~~~~~~~ 297 (350)
.+++++|+++++.|+. +++||+++ +++|+|||.+.++.+.+++ .++|+|++|+++.+. ...+|+++++++
T Consensus 128 ~~~~~~I~~~~~~H~~--~s~g~~i~~~~~~i~ysgDt~~~~~~~~~~~~~~~~Dlli~e~~~~~~~~~~~~H~~~~~a~ 205 (250)
T PRK11244 128 DLGGLQVTPLPLNHSK--LTFGYLLETAHSRVAYLTDTVGLPEDTLKFLRNNQPDLLVLDCSHPPQEDAPRNHNDLTTAL 205 (250)
T ss_pred eECCEEEEEEeeCCCc--ceeEEEEecCCeEEEEEcCCCCCCHHHHHHHhcCCCCEEEEeCcCCCCCCCCCCCCCHHHHH
Confidence 9999999999999987 68999996 8999999998776666654 579999999998654 357899999999
Q ss_pred HHHHHhCCCeEEEEEeecCCChhhHHHHHHHhhhhCCCcEEEcccCeEEEe
Q 018792 298 EEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 348 (350)
Q Consensus 298 ~~~~~~~~~~~vltH~~~~~~~~~~~~~l~~~~~~~~~~v~ia~DGm~i~l 348 (350)
++++++++++++++|+++..+. + +.+. +.+..++.+|+|||+++|
T Consensus 206 ~~a~~~~~k~lvltH~~~~~~~--~---~~~~-~~~~~~~~~a~DG~~i~~ 250 (250)
T PRK11244 206 AIIEVLRPPRVILTHISHQLDA--W---LMEN-AALPSGVEVAYDGMEIGL 250 (250)
T ss_pred HHHHhcCCceEEEEcccCCcch--h---hhhh-hhcCCceEEecCccEeeC
Confidence 9999999999999999876531 1 1222 333347999999999975
No 5
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=100.00 E-value=9.5e-36 Score=276.54 Aligned_cols=241 Identities=19% Similarity=0.223 Sum_probs=184.1
Q ss_pred EEEEeccCCCCcCccCccCCCCCCCCCCccccCCCCCCccccceEEEEecCCCCCceEEEecCcchHHHHHhhCCcCCCC
Q 018792 70 IVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIR 149 (350)
Q Consensus 70 i~~LGtG~~~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~ 149 (350)
|+|||||++ +|. ..|+.+|++|+..++.++..+|||||+++..++.+. ++.+.
T Consensus 1 ~~~LGt~~~--~p~-----------------------~~r~~s~~lv~~~~~~~~~~iLiD~G~g~~~~l~~~--~i~~~ 53 (303)
T TIGR02649 1 LIFLGTSAG--VPT-----------------------RTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHT--AFNPG 53 (303)
T ss_pred CEEEecCCC--CCC-----------------------CCCCccEEEEEccCCCCCCEEEEECCccHHHHHHHh--CCCHH
Confidence 589999987 565 357889999995211124789999999998877664 45668
Q ss_pred CccEEEecCCcccccCChhHHHHh--hccCCccccEEechhhHHHHHHhccccccccCCCCCCcccceeeEEec-CcceE
Q 018792 150 TIDAVIITHSHADAIGGLDDLRDW--TNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFT 226 (350)
Q Consensus 150 ~Id~V~iTH~H~DH~~Gl~~l~~~--~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~ 226 (350)
+||+|||||.|+||++|++.+... ......+++||+|+.+.+.+......... . .....++..+. ++.+.
T Consensus 54 ~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~~~~~l~~~~~~~~~----~---~~~~~~~~~i~~~~~~~ 126 (303)
T TIGR02649 54 KLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRISGS----W---TDYPLEIVEIGAGEILD 126 (303)
T ss_pred HCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechhHHHHHHHHHHhccc----c---cCCceEEEEcCCCceEe
Confidence 999999999999999999987643 22234568999999988877654321100 0 01123455554 35667
Q ss_pred eCCEEEEEEEcccCCCccEEEEEEC------------------------------------------------------c
Q 018792 227 VQDLKITPLPVWHGAGYRSLGFRFG------------------------------------------------------N 252 (350)
Q Consensus 227 ~~~~~v~~~~~~H~~g~~s~g~~i~------------------------------------------------------~ 252 (350)
.++++|+++++.|.. +++||+++ +
T Consensus 127 ~~~~~v~~~~~~H~~--~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~ 204 (303)
T TIGR02649 127 DGLRKVTAYPLEHPL--ECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKA 204 (303)
T ss_pred cCCeEEEEEEccCcc--ceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcE
Confidence 788999999999986 89999983 4
Q ss_pred EEEeCCCCCCCcchhcccCCCCEEEEcccCCCC-----CCCCCCCHHHHHHHHHHhCCCeEEEEEeecCCChhhHHHHHH
Q 018792 253 ICYISDVSEIPEETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELL 327 (350)
Q Consensus 253 i~ysGDt~~~~~~~~~~~~~~dlLi~e~~~~~~-----~~~~H~~~~~~~~~~~~~~~~~~vltH~~~~~~~~~~~~~l~ 327 (350)
++|+|||.++ +++.++++++|+||+||++.+. ..++|++++++.++++++++++++|+|++++|+.....+.+.
T Consensus 205 i~y~gDt~~~-~~~~~~~~~adlLi~Eat~~~~~~~~a~~~~H~t~~~a~~~a~~~~~k~lvL~H~s~~y~~~~~~~~~~ 283 (303)
T TIGR02649 205 LAIFGDTGPC-DAALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLR 283 (303)
T ss_pred EEEecCCCCh-HHHHHHhcCCCEEEEeccCChhhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEEeccccCCccHHHHHH
Confidence 8999999996 5688999999999999999653 247899999999999999999999999999987543334444
Q ss_pred HhhhhCCCcEEEcccCeEEEe
Q 018792 328 KLMETEGLDVQLSYDGLRVPV 348 (350)
Q Consensus 328 ~~~~~~~~~v~ia~DGm~i~l 348 (350)
+..+.+. ++.+|+|||++.+
T Consensus 284 ~~~~~~~-~~~~a~d~~~~~~ 303 (303)
T TIGR02649 284 ECRSIFP-ATELANDFTVFNV 303 (303)
T ss_pred HHHHHCC-CCEecccccEEeC
Confidence 4444554 6899999999875
No 6
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=100.00 E-value=3e-35 Score=272.92 Aligned_cols=236 Identities=25% Similarity=0.317 Sum_probs=182.0
Q ss_pred EEEEEeccCCCCcCccCccCCCCCCCCCCccccCCCCCCccccceEEEEecCCCCCceEEEecCcchHHHHHhhCCcCCC
Q 018792 69 EIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGI 148 (350)
Q Consensus 69 ~i~~LGtG~~~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~ 148 (350)
||+|||||++ .|. ..|+++|++|+. ++..+|||||++...++.+. +..+
T Consensus 1 ~~~~lGtg~~--~p~-----------------------~~r~~~~~~v~~----~~~~iLiD~G~g~~~~l~~~--~~~~ 49 (299)
T TIGR02651 1 EITFLGTGGG--VPT-----------------------KERNLPSIALKL----NGELWLFDCGEGTQRQMLRS--GISP 49 (299)
T ss_pred CEEEEeCCCC--CCC-----------------------CCCCCceEEEEE----CCeEEEEECCHHHHHHHHHc--CCCH
Confidence 5899999986 554 247789999995 67899999999988777663 4456
Q ss_pred CCccEEEecCCcccccCChhHHHHhh--ccCCccccEEechhhHHHHHHhccccccccCCCCCCcccceeeEEecC-c-c
Q 018792 149 RTIDAVIITHSHADAIGGLDDLRDWT--NNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-E-P 224 (350)
Q Consensus 149 ~~Id~V~iTH~H~DH~~Gl~~l~~~~--~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~-~ 224 (350)
.+|++|||||.|.||++|++.++... .....+++||+|+.+.+.++....+.... ....+++..+.. + .
T Consensus 50 ~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 122 (299)
T TIGR02651 50 MKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEFIETSLRVSYTY-------LNYPIKIHEIEEGGLV 122 (299)
T ss_pred HHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHHHHHHHHHHcccC-------CCceEEEEEccCCCce
Confidence 78999999999999999999887542 22334689999999888776543221110 111234555553 3 5
Q ss_pred eEeCCEEEEEEEcccCCCccEEEEEEC-----------------------------------------------------
Q 018792 225 FTVQDLKITPLPVWHGAGYRSLGFRFG----------------------------------------------------- 251 (350)
Q Consensus 225 ~~~~~~~v~~~~~~H~~g~~s~g~~i~----------------------------------------------------- 251 (350)
+..++++|+++++.|.. +++||+++
T Consensus 123 ~~~~~~~v~~~~~~H~~--~~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g 200 (299)
T TIGR02651 123 FEDDGFKVEAFPLDHSI--PSLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKG 200 (299)
T ss_pred EecCCEEEEEEEcCCCC--ceEEEEEEECCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCC
Confidence 88899999999999976 79999974
Q ss_pred -cEEEeCCCCCCCcchhcccCCCCEEEEcccCCCC-----CCCCCCCHHHHHHHHHHhCCCeEEEEEeecCCChhhHHHH
Q 018792 252 -NICYISDVSEIPEETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEE 325 (350)
Q Consensus 252 -~i~ysGDt~~~~~~~~~~~~~~dlLi~e~~~~~~-----~~~~H~~~~~~~~~~~~~~~~~~vltH~~~~~~~~~~~~~ 325 (350)
+++|+|||.+++ ++.+.++++|+||+||++.+. ...+|+++++++++++++++++++++|+++++... .+.
T Consensus 201 ~~i~y~gDt~~~~-~~~~~~~~~dlLi~E~~~~~~~~~~~~~~~H~t~~~a~~~~~~~~~k~lvltH~s~~~~~~--~~~ 277 (299)
T TIGR02651 201 RKIAYTGDTRPCE-EVIEFAKNADLLIHEATFLDEDKKLAKEYGHSTAAQAAEIAKEANVKRLILTHISPRYSDE--EEL 277 (299)
T ss_pred cEEEEecCCCChH-HHHHHHcCCCEEEEECCCCchhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEecccccCCh--HHH
Confidence 599999999974 688899999999999998764 24789999999999999999999999999987541 222
Q ss_pred HHHhhhhCCCcEEEcccCeEEEe
Q 018792 326 LLKLMETEGLDVQLSYDGLRVPV 348 (350)
Q Consensus 326 l~~~~~~~~~~v~ia~DGm~i~l 348 (350)
+.+..+.+ .++.+|+|||++++
T Consensus 278 ~~~~~~~~-~~~~~a~dg~~~~~ 299 (299)
T TIGR02651 278 LEEAKKIF-PNTYIAEDFMEIEI 299 (299)
T ss_pred HHHHHHhC-CCcEEccCccEeeC
Confidence 33333334 37999999999975
No 7
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=100.00 E-value=5.1e-33 Score=249.60 Aligned_cols=229 Identities=28% Similarity=0.500 Sum_probs=170.9
Q ss_pred CCcCccCccCCCCCCCCCCccccCCCCCCccccceEEEEecCCCCCceEEEecCcchHHHHHhhCCcCCCCCccEEEecC
Q 018792 79 EGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITH 158 (350)
Q Consensus 79 ~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH 158 (350)
.|+|+++| +|++|..|++. +.+.|.++|++|+. ++..||||||... +.+ .....+||+|||||
T Consensus 2 ~~~p~~~c------~c~~c~~a~~~-~~~~r~~~s~~i~~----~~~~iliD~G~~~---~~~---~~~~~~id~i~iTH 64 (238)
T TIGR03307 2 QQVPVYGC------DCVACQRARRN-PDYRRQPCSAVIEF----NGARTLIDAGLTD---LAE---RFPPGSLQAILLTH 64 (238)
T ss_pred CCCCcCCc------cchhhHhhhhC-ccccCcceEEEEEE----CCcEEEEECCChh---Hhh---ccCccCCCEEEEec
Confidence 57999999 99999999876 55689999999995 6789999999653 222 23457899999999
Q ss_pred CcccccCChhHHHHhhccCCccccEEechhhHHHHHHhccccccccCCCCCCcccceeeEEecCcceEeCCEEEEEEEcc
Q 018792 159 SHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW 238 (350)
Q Consensus 159 ~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~~~~~~ 238 (350)
.|.||++|+..+... ..++++||+++.+... ...... ++ ...+......++.+.+++++|+++|+.
T Consensus 65 ~H~DHi~gl~~l~~~---~~~~~~v~~~~~~~~~-~~~~~~--------~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~ 130 (238)
T TIGR03307 65 YHMDHVQGLFPLRWG---VGEPIPVYGPPDEEGC-DDLFKH--------PG--ILDFSKPLEAFEPFDLGGLRVTPLPLV 130 (238)
T ss_pred CchhhhcchHHHHHh---cCCceeEEeCchHhhH-HHHhcC--------cc--cccccccccCCceEEECCEEEEEEecC
Confidence 999999999776432 1346899999876432 111110 00 000111112346788999999999999
Q ss_pred cCCCccEEEEEEC----cEEEeCCCCCCCcchhcccC--CCCEEEEcccCCCC--CCCCCCCHHHHHHHHHHhCCCeEEE
Q 018792 239 HGAGYRSLGFRFG----NICYISDVSEIPEETYPFLQ--DCEILIMDALRPDR--SSSTHFGLPRALEEVRKIQPKRTLF 310 (350)
Q Consensus 239 H~~g~~s~g~~i~----~i~ysGDt~~~~~~~~~~~~--~~dlLi~e~~~~~~--~~~~H~~~~~~~~~~~~~~~~~~vl 310 (350)
|.. +++||+++ +++|+||+.+.++.+.+.++ ++|+||+|+++... ...+|++++++++++++++++++++
T Consensus 131 H~~--~~~g~~i~~~~~~i~y~gDt~~~~~~~~~~~~~~~~D~li~e~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~lil 208 (238)
T TIGR03307 131 HSK--LTFGYLLETDGQRVAYLTDTAGLPPDTEAFLKNHPLDVLILDCSHPPQSDAPRNHNDLTRALAINEQLRPKQVIL 208 (238)
T ss_pred CCC--cceEEEEecCCcEEEEEecCCCCCHHHHHHHhcCCCCEEEEeCCcCccccCCCCcCCHHHHHHHHHHcCCCEEEE
Confidence 986 68999996 89999999987776666665 79999999998543 2468999999999999999999999
Q ss_pred EEeecCCChhhHHHHHHHhhhhCCCcEEEcccCeEE
Q 018792 311 IGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRV 346 (350)
Q Consensus 311 tH~~~~~~~~~~~~~l~~~~~~~~~~v~ia~DGm~i 346 (350)
+|+++..+. . +.+... ...++.+|+|||+|
T Consensus 209 ~H~~~~~~~--~---~~~~~~-~~~~~~~a~DG~~~ 238 (238)
T TIGR03307 209 THISHQLDA--W---LMENPD-LPSGVAVGYDGQTL 238 (238)
T ss_pred Eecccccch--H---HHhhhh-cCCceEEecccccC
Confidence 999887542 1 111111 22368999999985
No 8
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=252.45 Aligned_cols=249 Identities=25% Similarity=0.274 Sum_probs=173.8
Q ss_pred ceEEEEEeccCCCCcCccCccCCCCCCCCCCccccCCCCCCccccceEEEEecCCCCCceEEEecCcchHHHHHhhCCcC
Q 018792 67 QSEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAY 146 (350)
Q Consensus 67 ~~~i~~LGtG~~~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~ 146 (350)
.|+|+|||||++ +|. ..|+.++++|+. ++..+|||||+++..++.+. ..
T Consensus 1 ~m~i~fLGtg~~--~Pt-----------------------~~r~~~s~ll~~----~~~~~L~DcGeGt~~~l~~~--~~ 49 (292)
T COG1234 1 MMEITFLGTGGA--VPT-----------------------KDRNVSSILLRL----EGEKFLFDCGEGTQHQLLRA--GL 49 (292)
T ss_pred CcEEEEEecCCC--CCc-----------------------CccccceeEEEe----CCeeEEEECCHhHHHHHHHh--cC
Confidence 489999999987 675 368899999995 77899999999998888774 56
Q ss_pred CCCCccEEEecCCcccccCChhHHHHhh--ccCCccccEEechhhHHHHHHhccccc-cccCCCCCCcc--cceeeEE--
Q 018792 147 GIRTIDAVIITHSHADAIGGLDDLRDWT--NNVQRHIPIYVAMRDFEVMKKTHYYLV-DTSGIIPGAAV--SELQFNI-- 219 (350)
Q Consensus 147 ~~~~Id~V~iTH~H~DH~~Gl~~l~~~~--~~~~~~~~v~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~--~~~~~~~-- 219 (350)
.+.+|++|||||.|.||+.||+.+.... .....++.||+|+...+.+........ ........... ..+.+..
T Consensus 50 ~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~v~~~~ 129 (292)
T COG1234 50 PPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEFVETSLRLSYSKLTYEIIGHEIEEDAFEVEALE 129 (292)
T ss_pred ChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchhhhhhhhhhhcccccceEEEEEEeccCceEEEEEe
Confidence 6679999999999999999999876543 333446899999887766554321000 00000000000 0001100
Q ss_pred ecC----------cceEeC------------CEEEEEEEcccCCC--ccEEEEEEC------cEEEeCCCCCCCcchhcc
Q 018792 220 IDE----------EPFTVQ------------DLKITPLPVWHGAG--YRSLGFRFG------NICYISDVSEIPEETYPF 269 (350)
Q Consensus 220 i~~----------~~~~~~------------~~~v~~~~~~H~~g--~~s~g~~i~------~i~ysGDt~~~~~~~~~~ 269 (350)
++. +....+ +..++.++..|+.- ..+.+++++ +|+|+|||.+++ ++.+.
T Consensus 130 ~~h~~~~~~y~~~e~~~~~~~~~~~~~~~~~g~~~~~l~~~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p~~-~~~~~ 208 (292)
T COG1234 130 LDHGVPALGYRIEEPDRPGRFDAEKLKGLPPGPLITALKAGHPVEERVITPADRIGEPRKGKSVVYSGDTRPCD-ELIDL 208 (292)
T ss_pred cCCCccccceeeecCCCcCcCCHHHhcCCCCchHHHHHhCCCceeeeecCHHHhccccCCCcEEEEECCCCCCH-HHHHH
Confidence 000 011111 45666677777631 023334443 899999999994 68999
Q ss_pred cCCCCEEEEcccCCCCC-----CCCCCCHHHHHHHHHHhCCCeEEEEEeecCCChhhHHHHHHHhhhhCCCcEEEcccCe
Q 018792 270 LQDCEILIMDALRPDRS-----SSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGL 344 (350)
Q Consensus 270 ~~~~dlLi~e~~~~~~~-----~~~H~~~~~~~~~~~~~~~~~~vltH~~~~~~~~~~~~~l~~~~~~~~~~v~ia~DGm 344 (350)
++++|+|||||++.+.. ..+|++.+||.++++++++|+++|||++++|. ....+.+.+..+.+..++.+++|+|
T Consensus 209 a~~aDlLiHEat~~~~~~~~a~~~~HsT~~eAa~iA~~A~vk~LiLtH~s~ry~-~~~~~~~~ea~~~f~~~~~~a~D~~ 287 (292)
T COG1234 209 AKGADLLIHEATFEDDLEDLANEGGHSTAEEAAEIAKEAGVKKLILTHFSPRYP-KDDEELLKEARAIFPGETIVARDGL 287 (292)
T ss_pred hcCCCEEEEeccCCchhhhHHhhcCCCCHHHHHHHHHHcCCCeEEEEeeccccc-chHHHHHHHHHHhCCCceEEeccce
Confidence 99999999999997642 23499999999999999999999999999996 2223334555556665799999999
Q ss_pred EEEe
Q 018792 345 RVPV 348 (350)
Q Consensus 345 ~i~l 348 (350)
++++
T Consensus 288 ~~~v 291 (292)
T COG1234 288 VFEV 291 (292)
T ss_pred EEec
Confidence 9986
No 9
>PRK00055 ribonuclease Z; Reviewed
Probab=100.00 E-value=6.6e-32 Score=246.76 Aligned_cols=246 Identities=21% Similarity=0.184 Sum_probs=165.0
Q ss_pred ceEEEEEeccCCCCcCccCccCCCCCCCCCCccccCCCCCCccccceEEEEecCCCCCceEEEecCcchHHHHHhhCCcC
Q 018792 67 QSEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAY 146 (350)
Q Consensus 67 ~~~i~~LGtG~~~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~ 146 (350)
.|+|+|||||++ +|. ..|+++|++|+. ++..+|||||++...++.+. +.
T Consensus 1 ~m~i~~LGsg~~--~~~-----------------------~~r~~~~~li~~----~~~~iLiD~G~g~~~~l~~~--~~ 49 (270)
T PRK00055 1 MMELTFLGTGSG--VPT-----------------------PTRNVSSILLRL----GGELFLFDCGEGTQRQLLKT--GI 49 (270)
T ss_pred CeEEEEEecCCC--CCc-----------------------CCCCCCEEEEEE----CCcEEEEECCHHHHHHHHHc--CC
Confidence 389999999987 454 347789999995 67899999999987777653 45
Q ss_pred CCCCccEEEecCCcccccCChhHHHHhh--ccCCccccEEechhhHHHHHHhccc--cccccCCCCCCcccceee-----
Q 018792 147 GIRTIDAVIITHSHADAIGGLDDLRDWT--NNVQRHIPIYVAMRDFEVMKKTHYY--LVDTSGIIPGAAVSELQF----- 217 (350)
Q Consensus 147 ~~~~Id~V~iTH~H~DH~~Gl~~l~~~~--~~~~~~~~v~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~----- 217 (350)
.+.+|++|||||.|+||++|++.+.... .....+++||+|+.+.+.+...... ........+.. ...+..
T Consensus 50 ~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 128 (270)
T PRK00055 50 KPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVETLLRASGSLGYRIAEKDK-PGKLDAEKLKA 128 (270)
T ss_pred CHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHHHHHHHHHHhhceeEEEEEcCC-CCCCCHHHHHH
Confidence 6689999999999999999999887532 2234578899998887766542110 00000000000 000000
Q ss_pred EEec-Ccce-Ee-CCEEEEEEEcccCCCccEEEEEEC----cEEEeCCCCCCCcchhcccCCCCEEEEcccCCCCC----
Q 018792 218 NIID-EEPF-TV-QDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFLQDCEILIMDALRPDRS---- 286 (350)
Q Consensus 218 ~~i~-~~~~-~~-~~~~v~~~~~~H~~g~~s~g~~i~----~i~ysGDt~~~~~~~~~~~~~~dlLi~e~~~~~~~---- 286 (350)
..+. +..+ .+ .+.++.. ..|..-.++++|+++ +++|+|||++++ ++.+.++++|+||+||++.+..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~--~~~~~i~~~~~~~~~~~g~~~~y~~Dt~~~~-~~~~~~~~~d~li~E~~~~~~~~~~~ 205 (270)
T PRK00055 129 LGVPPGPLFGKLKRGEDVTL--EDGRIINPADVLGPPRKGRKVAYCGDTRPCE-ALVELAKGADLLVHEATFGDEDEELA 205 (270)
T ss_pred CCCCCCchHHHhhCCCeEEe--CCCcEEeHHHeeccCCCCcEEEEeCCCCCcH-HHHHHhCCCCEEEEeccCCcchhhHH
Confidence 0000 0000 00 1222221 112210146788885 899999999984 5888899999999999997642
Q ss_pred -CCCCCCHHHHHHHHHHhCCCeEEEEEeecCCChhhHHHHHHHhhhhCCCcEEEcccCeEEEee
Q 018792 287 -SSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVM 349 (350)
Q Consensus 287 -~~~H~~~~~~~~~~~~~~~~~~vltH~~~~~~~~~~~~~l~~~~~~~~~~v~ia~DGm~i~l~ 349 (350)
..+|+++++++++++++++++++++|+++.+.. ...+...+..+.+ .++.+|+|||+++|.
T Consensus 206 ~~~~H~~~~~a~~~~~~~~~~~~vl~H~~~~~~~-~~~~~~~~~~~~~-~~v~~a~Dg~~i~l~ 267 (270)
T PRK00055 206 KEYGHSTARQAAEIAKEAGVKRLILTHFSPRYTG-DPEELLKEAREIF-PNTELAEDLMRVEVP 267 (270)
T ss_pred hhcCCCCHHHHHHHHHHcCCCEEEEEeeccccCC-CHHHHHHHHHHHc-CCcEEccCCcEEEec
Confidence 478999999999999999999999999988752 1112222222334 389999999999874
No 10
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=99.97 E-value=2.8e-32 Score=264.35 Aligned_cols=246 Identities=23% Similarity=0.315 Sum_probs=181.5
Q ss_pred CceEEEEEeccCCCCcCccCccCCCCCCCCCCccccCCCCCCccccceEEEEecCCCCCceEEEecCcchHHHHHhhCCc
Q 018792 66 QQSEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPA 145 (350)
Q Consensus 66 ~~~~i~~LGtG~~~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~ 145 (350)
++++|.|||||++ +|. +.|+.++++|+. ..+..||+|||+++..|+.+.+.-
T Consensus 441 ~~~eIi~LGTGSa--iPs-----------------------kyRNVSS~lv~i---~~~~~IlLDCGEgTlgql~R~YG~ 492 (746)
T KOG2121|consen 441 KDPEIIFLGTGSA--IPS-----------------------KYRNVSSILVRI---DSDDSILLDCGEGTLGQLVRHYGV 492 (746)
T ss_pred CCcEEEEecCCcc--CCC-----------------------cccceEEEEEec---cCCccEEeecCCchHHHHHHHhhh
Confidence 7899999999988 665 579999999997 355679999999999999887652
Q ss_pred CC----CCCccEEEecCCcccccCChhHHHHhhcc-----CCccccEEechhhHHHHHHhccc--ccc-ccC-C-CCCCc
Q 018792 146 YG----IRTIDAVIITHSHADAIGGLDDLRDWTNN-----VQRHIPIYVAMRDFEVMKKTHYY--LVD-TSG-I-IPGAA 211 (350)
Q Consensus 146 ~~----~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~-----~~~~~~v~~~~~~~~~l~~~~~~--~~~-~~~-~-~~~~~ 211 (350)
.+ ++++.+|+|||.|+||..|+..+++.... ...++-|.+|....+|+..++.- ... ... . .++..
T Consensus 493 ~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~l 572 (746)
T KOG2121|consen 493 ENVDTALRKLRAIFISHLHADHHLGLISVLQARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGAL 572 (746)
T ss_pred cchHHHHHhHHHHHHHhhcccccccHHHHHHHHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcCchhh
Confidence 11 47899999999999999999987764321 22345567788999999877511 000 000 0 01211
Q ss_pred ccceee-EEec---Ccc-eEeCCEEEEEEEcccCCCccEEEEEEC-----cEEEeCCCCCCCcchhcccCCCCEEEEccc
Q 018792 212 VSELQF-NIID---EEP-FTVQDLKITPLPVWHGAGYRSLGFRFG-----NICYISDVSEIPEETYPFLQDCEILIMDAL 281 (350)
Q Consensus 212 ~~~~~~-~~i~---~~~-~~~~~~~v~~~~~~H~~g~~s~g~~i~-----~i~ysGDt~~~~~~~~~~~~~~dlLi~e~~ 281 (350)
...... -..+ ... -+.+...|..+|+.|++ .++|..+. +++|+|||+|+ +.+.+..+++|+||||||
T Consensus 573 f~~~s~~s~~~~~~~~~l~~~~l~~i~tc~viHCp--~syg~~i~~~~~~Ki~YSGDTrP~-~~~v~~g~datlLIHEAT 649 (746)
T KOG2121|consen 573 FAQKSPDSVPERLLSYLLRELGLESIQTCPVIHCP--QSYGCSITHGSGWKIVYSGDTRPC-EDLVKAGKDATLLIHEAT 649 (746)
T ss_pred hhccCccccchhhhhHHHHhcCceeEEecCcEecC--hhhceeEecccceEEEEcCCCCCc-hhHhhhccCCceEEeehh
Confidence 110000 0000 111 23466789999999999 78998885 99999999998 469999999999999999
Q ss_pred CCCC-----CCCCCCCHHHHHHHHHHhCCCeEEEEEeecCCChhhHHHHHHHhhhhCCCcEEEcccCeEEEe
Q 018792 282 RPDR-----SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 348 (350)
Q Consensus 282 ~~~~-----~~~~H~~~~~~~~~~~~~~~~~~vltH~~~~~~~~~~~~~l~~~~~~~~~~v~ia~DGm~i~l 348 (350)
+.+. ...+|+|..||++.++++++++++||||+++|.+-.+.. ...-.++-+|+|+|.|.+
T Consensus 650 ~ED~l~EeAv~k~HST~sEAi~V~~~m~ar~liLTHFSQRY~K~pl~~------d~~~~~~~~afd~m~v~~ 715 (746)
T KOG2121|consen 650 LEDDLEEEAVEKGHSTTSEAISVAKKMNAKRLILTHFSQRYPKVPLPS------DGEMDPVCVAFDKMAVSV 715 (746)
T ss_pred hchhHHHHHHHhCCCCHHHHHHHHHhccchhhhhhhhhcccCCCCCCC------ccccchHHHhhhcceeec
Confidence 9875 468999999999999999999999999999997532111 011124678999998875
No 11
>PRK02126 ribonuclease Z; Provisional
Probab=99.95 E-value=6.7e-26 Score=211.55 Aligned_cols=199 Identities=18% Similarity=0.248 Sum_probs=147.4
Q ss_pred ceEEEEecCCCCCceEEEecCcchHHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhHH
Q 018792 112 TSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFE 191 (350)
Q Consensus 112 ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~ 191 (350)
+|++|... .++..+|||||. ..++.+ .++.+|++||+||.|.||++|++.|+.+...+.++++||+++.+.+
T Consensus 17 n~~~l~~~--~~~~~iLiD~G~--~~~l~~----~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~~ 88 (334)
T PRK02126 17 PGLYVDFL--FERRALLFDLGD--LHHLPP----RELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFAD 88 (334)
T ss_pred cEEEEEEC--CCCeEEEEcCCC--HHHHhh----cCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHHH
Confidence 56777742 257889999999 334433 4667999999999999999999999876544456789999999999
Q ss_pred HHHHhcc-cccccc-CCCCCCccccee----------e-------------EEe-cCcceEeCCEEEEEEEcccCCCccE
Q 018792 192 VMKKTHY-YLVDTS-GIIPGAAVSELQ----------F-------------NII-DEEPFTVQDLKITPLPVWHGAGYRS 245 (350)
Q Consensus 192 ~l~~~~~-~~~~~~-~~~~~~~~~~~~----------~-------------~~i-~~~~~~~~~~~v~~~~~~H~~g~~s 245 (350)
.+...+. +.+... ...+........ + ..+ ++..+..++++|+++++.|+. ++
T Consensus 89 ~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~~H~v--p~ 166 (334)
T PRK02126 89 QVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFLDHGI--PC 166 (334)
T ss_pred HHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEccCCC--ce
Confidence 8877653 211100 000000000000 0 000 122356789999999999987 89
Q ss_pred EEEEEC-----------------------------------------------------------------------cEE
Q 018792 246 LGFRFG-----------------------------------------------------------------------NIC 254 (350)
Q Consensus 246 ~g~~i~-----------------------------------------------------------------------~i~ 254 (350)
+||+|+ +++
T Consensus 167 ~gy~~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~v~ 246 (334)
T PRK02126 167 LAFALEEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPLGELKERVLRIEPGQKIG 246 (334)
T ss_pred eEEEEEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecHHHHHHHhccCCCCCEEE
Confidence 999884 499
Q ss_pred EeCCCCCCCc---chhcccCCCCEEEEcccCCCC-----CCCCCCCHHHHHHHHHHhCCCeEEEEEeecCCChh
Q 018792 255 YISDVSEIPE---ETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHE 320 (350)
Q Consensus 255 ysGDt~~~~~---~~~~~~~~~dlLi~e~~~~~~-----~~~~H~~~~~~~~~~~~~~~~~~vltH~~~~~~~~ 320 (350)
|+|||+++++ .+.++++++|+||+||++.+. ...+|++++++.+++++.++++++++|+++++...
T Consensus 247 y~gDT~~~~~~~~~l~~~a~~aDlLI~Eat~~~~~~~~a~~~gH~t~~~a~~lA~~a~vk~LvLtH~sp~~~~~ 320 (334)
T PRK02126 247 YVTDIGYTEENLARIVELAAGVDLLFIEAVFLDEDAEKARRKNHLTARQAGRLAREAGVKRLLPFHFSPRYQGR 320 (334)
T ss_pred EECCCCCCcccHHHHHHHHcCCCEEEEEcccChHHhhhcccCCCCCHHHHHHHHHHcCCCEEEEEecCcccCCc
Confidence 9999999874 477888999999999999753 34789999999999999999999999999988543
No 12
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.92 E-value=7.8e-24 Score=188.77 Aligned_cols=204 Identities=17% Similarity=0.212 Sum_probs=144.4
Q ss_pred ceEEEEecCCCCCceEEEecCcchHHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhHH
Q 018792 112 TSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFE 191 (350)
Q Consensus 112 ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~ 191 (350)
+|++|+. ++.+|||||+...... ..+..... ++|+|++||.|.||++++..+.. ++.+++|++....+
T Consensus 9 s~~li~~----~~~~iLiDP~~~~~~~--~~~~~~~~-~id~vliTH~H~DH~~~~~~~~~-----~~~~~v~~~~~~~~ 76 (228)
T PRK00685 9 SAFLIET----GGKKILIDPFITGNPL--ADLKPEDV-KVDYILLTHGHGDHLGDTVEIAK-----RTGATVIANAELAN 76 (228)
T ss_pred eEEEEEE----CCEEEEECCCCCCCCC--CCCChhcC-cccEEEeCCCCccccccHHHHHH-----hCCCEEEEeHHHHH
Confidence 4889995 7899999985421000 01111123 89999999999999999876643 23578999988777
Q ss_pred HHHHhccccccccCCCCCCcccceeeEEec-CcceEeCCEEEEEEEcccCCCcc----------EEEEEEC----cEEEe
Q 018792 192 VMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGAGYR----------SLGFRFG----NICYI 256 (350)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~v~~~~~~H~~g~~----------s~g~~i~----~i~ys 256 (350)
.+.... .. ++..++ ++.+++++++|+++|+.|+.... ++||+++ +++|+
T Consensus 77 ~~~~~~--------------~~--~~~~~~~~~~~~~~~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~~~~i~~~ 140 (228)
T PRK00685 77 YLSEKG--------------VE--KTHPMNIGGTVEFDGGKVKLTPALHSSSFIDEDGITYLGNPTGFVITFEGKTIYHA 140 (228)
T ss_pred HHHhcC--------------CC--ceeeccCCCcEEECCEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEECCeEEEEe
Confidence 665320 00 233343 46788999999999999976421 5899996 99999
Q ss_pred CCCCCCCc-chhcccCCCCEEEEcccCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEEeecCCChhhHHHHHHHhhhhCCC
Q 018792 257 SDVSEIPE-ETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGL 335 (350)
Q Consensus 257 GDt~~~~~-~~~~~~~~~dlLi~e~~~~~~~~~~H~~~~~~~~~~~~~~~~~~vltH~~~~~~~~~~~~~l~~~~~~~~~ 335 (350)
||++++++ ..+....++|++++.... ..|+++++++++++++++|+++++|+..........+++.+.+++.+.
T Consensus 141 GDt~~~~~~~~~~~~~~~D~~~~~~~~-----~~h~~~~ea~~~~~~~~~k~~v~~H~~~~~~~~~~~~~~~~~~~~~~~ 215 (228)
T PRK00685 141 GDTGLFSDMKLIGELHKPDVALLPIGD-----NFTMGPEDAALAVELIKPKIVIPMHYNTFPLIEQDPEKFKALVEGLGT 215 (228)
T ss_pred cCccchhHHHHHHHhhCCCEEEEecCC-----ccccCHHHHHHHHHhhCCCEEEEeccCCCcCCcCCHHHHHHHHHhcCC
Confidence 99998764 122223478999986532 469999999999999999999999986432111112444444555677
Q ss_pred cEEEcccCeEEEe
Q 018792 336 DVQLSYDGLRVPV 348 (350)
Q Consensus 336 ~v~ia~DGm~i~l 348 (350)
++.++.+|++++|
T Consensus 216 ~~~~~~~G~~~~~ 228 (228)
T PRK00685 216 KVVILKPGESIEL 228 (228)
T ss_pred cEEECCCCCEeeC
Confidence 8999999999875
No 13
>PRK04286 hypothetical protein; Provisional
Probab=99.91 E-value=1.9e-23 Score=192.89 Aligned_cols=245 Identities=16% Similarity=0.152 Sum_probs=154.3
Q ss_pred eEEEEEeccCCCCcCccCccCCCCCCCCCCccccCCCCCCccccceEEEEecCCCCCceEEEecCcch------------
Q 018792 68 SEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFF------------ 135 (350)
Q Consensus 68 ~~i~~LGtG~~~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~------------ 135 (350)
|++.+||+|+.. +.++|++|+. ++..||||+|...
T Consensus 1 m~~~~l~s~s~g-----------------------------~~~~~~~I~~----~~~~iLID~G~~~~~~~~~~~~~~~ 47 (298)
T PRK04286 1 MKIIPLASESLG-----------------------------VRSMATFVET----KDVRILIDPGVSLAPRRYGLPPHPI 47 (298)
T ss_pred CEEEEEEeCCCC-----------------------------ceeeEEEEEE----CCeEEEEcCCCCcCccccCCCCcch
Confidence 789999997642 2357899995 7899999999542
Q ss_pred -HHHHHhhCCc--CCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhHHH-HHHhccc--cccccCCCCC
Q 018792 136 -YHSALRWFPA--YGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEV-MKKTHYY--LVDTSGIIPG 209 (350)
Q Consensus 136 -~~~l~~~l~~--~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~-l~~~~~~--~~~~~~~~~~ 209 (350)
...+.+.+.. ..+.+||+||+||.|+||+.|+..++.....++.++++|....+... ....... ..... ....
T Consensus 48 ~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 126 (298)
T PRK04286 48 ELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPYELSDEEIPKEIYKGKIVLIKDPTENINWSQRRRAP-RFLK 126 (298)
T ss_pred hHHHHHHHHHHhhcccccCCEEEecCCccccCCCccccccccccccchHHHhcCceecccCHHHHcCHHHHhhHH-hHHH
Confidence 0122222212 22578999999999999999886652111111223566665444311 0000000 00000 0000
Q ss_pred C-cccceeeEEecCcceEeCCEEEEEE-EcccCCCccEEEEEE----C----cEEEeCCCC-CCCcchhcccC--CCCEE
Q 018792 210 A-AVSELQFNIIDEEPFTVQDLKITPL-PVWHGAGYRSLGFRF----G----NICYISDVS-EIPEETYPFLQ--DCEIL 276 (350)
Q Consensus 210 ~-~~~~~~~~~i~~~~~~~~~~~v~~~-~~~H~~g~~s~g~~i----~----~i~ysGDt~-~~~~~~~~~~~--~~dlL 276 (350)
. ..........+++.+.+++++|++. ++.|+....++||.+ + +++|+||++ ..++++.+.++ ++|+|
T Consensus 127 ~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~~~~~~~Gy~i~~ri~~gg~~~~~~gDt~~~~~~~~~~~l~~~d~dlL 206 (298)
T PRK04286 127 AVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHGADGSKLGYVIMVRISDGDESFVFASDVQGPLNDEAVEFILEKKPDVV 206 (298)
T ss_pred HHHhcCCceEECCCCEEEECCEEEEEeccCCCCCCCCccceEEEEEEEeCCEEEEEECCCCCCCCHHHHHHHhcCCCCEE
Confidence 0 0000122233457789999999966 788965213556544 3 899999999 55667777776 89999
Q ss_pred EEccc--CCCCC----CCCCCCHHHHHHHHHHhCCCeEEEE-EeecCCChhhHHHHHHHhhhhCCCcEEEcccCeEEE
Q 018792 277 IMDAL--RPDRS----SSTHFGLPRALEEVRKIQPKRTLFI-GMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVP 347 (350)
Q Consensus 277 i~e~~--~~~~~----~~~H~~~~~~~~~~~~~~~~~~vlt-H~~~~~~~~~~~~~l~~~~~~~~~~v~ia~DGm~i~ 347 (350)
++++. +.+.. ..+|++.+.+.+++.. ++|+++|+ |+++..+++++...+.+.++..++.+..|-|.|-.+
T Consensus 207 i~~~~p~~lk~~ri~~~~~h~s~~~~~~l~~~-~~k~liLtHHls~~~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 283 (298)
T PRK04286 207 IIGGPPTYLLGRRLSEEDLEKGIENLEEIVKN-TPETLILDHHLLRDKNYREKLKELYERAEDRGVRVLTAAEFLGLE 283 (298)
T ss_pred EeCCcchhhhhhhhccccHHHHHHHHHHHHhc-CCCEEEEeccccccCCcHHHHHHHHHHHhhcCceEEeHHHHcCCC
Confidence 99983 33212 2445555555555555 99999999 899988888887888888888999999888876543
No 14
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.90 E-value=5.8e-23 Score=183.74 Aligned_cols=199 Identities=14% Similarity=0.129 Sum_probs=139.8
Q ss_pred CceEEEe-cCcchHHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHH-h--hccCCccccEEechhhHHHHHHhccc
Q 018792 124 RRNILID-AGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRD-W--TNNVQRHIPIYVAMRDFEVMKKTHYY 199 (350)
Q Consensus 124 ~~~iLID-~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~-~--~~~~~~~~~v~~~~~~~~~l~~~~~~ 199 (350)
...||+| +|.+....+.. .+..+++|||||.|.||++|+..+.. . ...+.++..||+|+...+.+......
T Consensus 18 ~~~ilfD~ag~g~~~~l~~-----k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve~~~~~ 92 (277)
T TIGR02650 18 PEEIIFDAAEEGSSTLGGK-----KVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEEETSEF 92 (277)
T ss_pred chhheehhhcccchhHHhh-----hHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHHHHHHHH
Confidence 5789999 99987655533 24689999999999999999976543 2 22345567899999877665532221
Q ss_pred cccccCCCCCCcccceeeEEecC-cceEeC----CEEEEEEEcccC-CCccEEEEEEC----------------------
Q 018792 200 LVDTSGIIPGAAVSELQFNIIDE-EPFTVQ----DLKITPLPVWHG-AGYRSLGFRFG---------------------- 251 (350)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~----~~~v~~~~~~H~-~g~~s~g~~i~---------------------- 251 (350)
+.... ........+..+++ +.+... ...|+++++.|. .+.+|+||.+.
T Consensus 93 ~~~~~----~~~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E~~~l~~~eI~~l~ 168 (277)
T TIGR02650 93 IKAAN----EDLFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEEFGGDDKKEARLLK 168 (277)
T ss_pred HHHhh----hhhccCcccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEeecchHhHcCCCHHHHHHHH
Confidence 11111 00111223333443 333333 378999999998 34568999881
Q ss_pred --------------cEEEeCCCCCCCcchhcccCCCCEEEEcccCCCC---CCCCCCCHHHHHHHHHHhCCCeEEEEEee
Q 018792 252 --------------NICYISDVSEIPEETYPFLQDCEILIMDALRPDR---SSSTHFGLPRALEEVRKIQPKRTLFIGMM 314 (350)
Q Consensus 252 --------------~i~ysGDt~~~~~~~~~~~~~~dlLi~e~~~~~~---~~~~H~~~~~~~~~~~~~~~~~~vltH~~ 314 (350)
+++|+|||.+++. +.++++|+||||||+.+. ...+|++..|+++.+++.++++++++|++
T Consensus 169 ~~gg~~~t~e~~~~~vvysGDT~~~~~---~~a~~adlLIhEaTf~d~~~~~~~gH~t~~eaa~~A~~a~vk~LiLtH~S 245 (277)
T TIGR02650 169 EEGGDDFTREEHHKILLIIGDDLAADD---EEEEGGEELIHECCFFDDADDRRKKHAAADDEMEESKKAAGKKKIILHHI 245 (277)
T ss_pred HhCCccccccccCcEEEEeCCCCCCCh---HHhcCCCEEEEecccccccccccCCCCCHHHHHHHHHHcCCCEEEEEeec
Confidence 7999999999853 677899999999999765 24589999999999999999999999999
Q ss_pred cCCChhhHHHHHHHhhhhCC
Q 018792 315 HLMDHEKVNEELLKLMETEG 334 (350)
Q Consensus 315 ~~~~~~~~~~~l~~~~~~~~ 334 (350)
.+|....+.+.+.++.++..
T Consensus 246 sry~~~~~~~~~~~~~~~~~ 265 (277)
T TIGR02650 246 SRRIIRILKSIIKKREEEMD 265 (277)
T ss_pred ccccHHHHHHHHHHHHhhcC
Confidence 99865443444444434433
No 15
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=99.90 E-value=1.5e-22 Score=184.74 Aligned_cols=228 Identities=28% Similarity=0.482 Sum_probs=142.7
Q ss_pred CceEEEEEeccCCCCcCccCccCCCCCCCCCCccccCCCCCCccccceEEEEecCCCCCceEEEecCcchHHHHHhhCCc
Q 018792 66 QQSEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPA 145 (350)
Q Consensus 66 ~~~~i~~LGtG~~~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~ 145 (350)
..|++++||||++.|+|.++| .|..|. +.|......+. .++++||+|++.+.+..+
T Consensus 2 ~~~~f~~lgsG~~gg~p~~~~------~~~~c~--------~~~~~v~~~~~------~~~~lid~g~~~~~~~~~---- 57 (269)
T COG1235 2 GGMRFTVLGSGSSGGVPVIGC------DCRACG--------GNRLRVDCGVG------VKTLLIDAGPDLRDQGLR---- 57 (269)
T ss_pred CceEEEEEEEcCCCCceecCC------CccccC--------CceEEEEEEec------ceeEEEecChhHHhhhhc----
Confidence 468999999999999999999 999997 12223333443 248999999998766554
Q ss_pred CCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhHHH-----HHHhccccccccCCCCCC--cccceeeE
Q 018792 146 YGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEV-----MKKTHYYLVDTSGIIPGA--AVSELQFN 218 (350)
Q Consensus 146 ~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~-----l~~~~~~~~~~~~~~~~~--~~~~~~~~ 218 (350)
..+..+|+||+||.|+||+.|++.|+.++. .+++........ +...+.+....... +.. .....++.
T Consensus 58 ~~~~~idai~~TH~H~DHi~Gl~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 131 (269)
T COG1235 58 LGVSDLDAILLTHEHSDHIQGLDDLRRAYT-----LPIYVNPGTLRASTSDRLLGGFPYLFRHPFP-PFSLPAIGGLEVT 131 (269)
T ss_pred ccccccCeEEEecccHHhhcChHHHHHHhc-----CCcccccceecccchhhhhccchhhhcCCCC-ccccccccceeee
Confidence 334689999999999999999999988653 233333222221 12222211111000 000 00111111
Q ss_pred E--ecCcceEeCCEEEEEEEcccCCCccEEEEE----ECcEEEeCCCCCCCcchhc---ccCCCCEEEEcccCCCC-CCC
Q 018792 219 I--IDEEPFTVQDLKITPLPVWHGAGYRSLGFR----FGNICYISDVSEIPEETYP---FLQDCEILIMDALRPDR-SSS 288 (350)
Q Consensus 219 ~--i~~~~~~~~~~~v~~~~~~H~~g~~s~g~~----i~~i~ysGDt~~~~~~~~~---~~~~~dlLi~e~~~~~~-~~~ 288 (350)
. ++.+.+...+..+......+..+ ...||. .+++.|.+|+...+++... .....++.+.+.++++. ...
T Consensus 132 ~~~~~hd~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~vay~~Dt~~~~~~~d~~l~~~~~~~~~~~~~~~~~~gh~~ 210 (269)
T COG1235 132 PFPVPHDAIEPVGFVIIRTGRKLHGG-TDIGYGLEWRIGDVAYLTDTELFPSNHDVELLDNGLYPLDIKDRILPDPGHLS 210 (269)
T ss_pred cCCCCCccccCCCcccccCccccccc-ccceeeeeeeeccEEEccccccCcchhHHHHhcCCccceeeeeccccccCCCC
Confidence 1 11123333222222222222221 344444 3488899999988765443 33456777777777653 467
Q ss_pred CCCCHHHHHHHHHHhCCCeEEEEEeecCCChhhHHH
Q 018792 289 THFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNE 324 (350)
Q Consensus 289 ~H~~~~~~~~~~~~~~~~~~vltH~~~~~~~~~~~~ 324 (350)
+|.+++++.+++++.++++++++|+++.+++.+..+
T Consensus 211 ~h~~~~~a~~~~~~~~~~rivLtHls~~~~~~~~~~ 246 (269)
T COG1235 211 NHLSAEEALELIEKLKPKRLVLTHLSHKNDDEELPE 246 (269)
T ss_pred CchhHHHHHHHHHhCCcceEEEEecCCCCCHHHHhh
Confidence 899999999999999999999999999998654433
No 16
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.89 E-value=4.1e-22 Score=172.83 Aligned_cols=174 Identities=30% Similarity=0.436 Sum_probs=126.4
Q ss_pred ceEEEecCcchHHHH--H-hhCCc-CCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhHHHHHHh-ccc
Q 018792 125 RNILIDAGKFFYHSA--L-RWFPA-YGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKT-HYY 199 (350)
Q Consensus 125 ~~iLID~G~~~~~~l--~-~~l~~-~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~-~~~ 199 (350)
++||||||.+.. ++ . +.... ..+.+||+|||||.|.||+.|+..+........ . +||+++.+.+.+... ...
T Consensus 1 ~~iLiD~g~~~~-~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~-~-~i~~~~~~~~~l~~~~~~~ 77 (194)
T PF12706_consen 1 HRILIDCGPGTR-SLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHP-K-PIYGPPETKEFLREYKFGI 77 (194)
T ss_dssp SEEEESE-TTHH-HHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCT-T-EEEECHHHHHHHHHHHHTH
T ss_pred CEEEEeCCCCcc-cccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhccc-c-eEEecHHHHHHHHhhhccc
Confidence 479999999865 32 1 11111 122489999999999999999988876543222 2 899999999988842 110
Q ss_pred cccccCCCCCCcccceeeEEec-CcceEeCCEEEEEEEcccCCCccEEE----EEEC----cEEEeCCCCCCCcchhccc
Q 018792 200 LVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGAGYRSLG----FRFG----NICYISDVSEIPEETYPFL 270 (350)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~v~~~~~~H~~g~~s~g----~~i~----~i~ysGDt~~~~~~~~~~~ 270 (350)
... .+ .....++..+. ++.+++++++|+++|+.|..+ ..+ |+++ +++|+||+.+ + ++.+
T Consensus 78 ~~~----~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~H~~~--~~~~~~g~~i~~~~~~i~~~gD~~~--~--~~~~ 145 (194)
T PF12706_consen 78 LDL----YP--EEDNFDIIEISPGDEFEIGDFRITPFPANHGPP--SYGGNKGFVIEPDGKKIFYSGDTNY--D--FEEL 145 (194)
T ss_dssp HTT----CC--TTSGEEEEEECTTEEEEETTEEEEEEEEESSSC--CEEECCEEEEEETTEEEEEETSSSS--C--HHHH
T ss_pred ccc----cc--cccceeEEEeccCceEEeceEEEEEEecccccc--ccccCceEEEecCCcceEEeeccch--h--hhhh
Confidence 000 00 11233455554 467899999999999999985 333 8886 9999999998 2 3445
Q ss_pred CCCCEEEEcccCCC------CCCCCCCCHHHHHHHHHHhCCCeEEEEEe
Q 018792 271 QDCEILIMDALRPD------RSSSTHFGLPRALEEVRKIQPKRTLFIGM 313 (350)
Q Consensus 271 ~~~dlLi~e~~~~~------~~~~~H~~~~~~~~~~~~~~~~~~vltH~ 313 (350)
+++|++++||++.. .....|+++++++++++++++++++++|+
T Consensus 146 ~~~D~li~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~il~H~ 194 (194)
T PF12706_consen 146 KNIDLLILECGYIDEEEEPPARGPGHMTLEEALELAKELKAKKVILIHF 194 (194)
T ss_dssp TTBSEEEEEBCBSSGGHHCHHCCTTSBBHHHHHHHHHHHTTSEEEEESB
T ss_pred ccCCEEEEeCCCcchhhcccccCCCCCCHHHHHHHHHHcCCCEEEEECC
Confidence 89999999999873 35589999999999999999999999996
No 17
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.82 E-value=9.2e-19 Score=169.85 Aligned_cols=208 Identities=18% Similarity=0.252 Sum_probs=137.9
Q ss_pred cccceEEEEecCCCCCceEEEecCcchHHH-HH---------hhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCC
Q 018792 109 RLNTSILIRYPGPSGRRNILIDAGKFFYHS-AL---------RWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQ 178 (350)
Q Consensus 109 r~~ss~lI~~~~~~~~~~iLID~G~~~~~~-l~---------~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~ 178 (350)
.+.+|++|+. ++..+|||||...... +. +++. ....+|++|||||.|.||++|++.+....
T Consensus 12 iG~n~~ll~~----~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~-~~~~~i~~I~iTH~H~DHiggl~~l~~~~---- 82 (422)
T TIGR00649 12 IGKNMYVVEI----DDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQ-ENQDKVKGIFITHGHEDHIGAVPYLFHTV---- 82 (422)
T ss_pred cCCeEEEEEE----CCeEEEEeCCCCCCcccccCCccccCCHHHHH-hccccCCEEEECCCChHHhCcHHHHHHhC----
Confidence 4568999995 7789999999864211 10 1111 12468999999999999999999987643
Q ss_pred ccccEEechhhHHHHHHhccccccccCCCCCCcccceeeEEec-CcceEeC-CEEEEEEEcccCCCccEEEEEEC----c
Q 018792 179 RHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQ-DLKITPLPVWHGAGYRSLGFRFG----N 252 (350)
Q Consensus 179 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~-~~~v~~~~~~H~~g~~s~g~~i~----~ 252 (350)
+..+||+++.+.+.+...... . +... ...+..++ ++.++++ +++|+++++.|... .++||+++ +
T Consensus 83 ~~~~Vy~~~~t~~~l~~~~~~---~-----~~~~-~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p-~s~g~~i~~~~~~ 152 (422)
T TIGR00649 83 GFPPIYGTPLTIALIKSKIKE---N-----KLNV-RTDLLEIHEGEPIETGENHTIEFIRITHSIP-DSVGFALHTPLGY 152 (422)
T ss_pred CCCeEEeCHHHHHHHHHHHHh---c-----CCCC-CCceEEeCCCCEEEeCCceEEEEEECCCCCc-ceEEEEEEeCCcE
Confidence 236899999988877654220 0 0000 11234444 4778996 59999999999631 58999984 8
Q ss_pred EEEeCCCCCCC-------cc---hhccc-CCCCEEEEcccCCCC---CCCCCCCHHHHHHHHHHhCCCeEEEEEeecCCC
Q 018792 253 ICYISDVSEIP-------EE---TYPFL-QDCEILIMDALRPDR---SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMD 318 (350)
Q Consensus 253 i~ysGDt~~~~-------~~---~~~~~-~~~dlLi~e~~~~~~---~~~~H~~~~~~~~~~~~~~~~~~vltH~~~~~~ 318 (350)
++|+||+.... .+ +.+.. +++|+|++|+|+... ....|...+++.+.+++.+ .+++++|++....
T Consensus 153 ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~~~~~e~~~~~~i~~~~~~~~-~~viv~~fa~~~~ 231 (422)
T TIGR00649 153 IVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENPGFTPSEAKVLEQLNDIFKNAK-GRVIVATFASNIH 231 (422)
T ss_pred EEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHhCC-CEEEEEEccccHH
Confidence 99999996421 11 22222 468999999998642 2234556666677776655 5699999885432
Q ss_pred hhhHHHHHHHhhhhCCCcEEE
Q 018792 319 HEKVNEELLKLMETEGLDVQL 339 (350)
Q Consensus 319 ~~~~~~~l~~~~~~~~~~v~i 339 (350)
+ .+++.+.+++++.+|.+
T Consensus 232 --R-~~~i~~~a~~~~r~v~v 249 (422)
T TIGR00649 232 --R-VQQLIQIARKQGRKFAV 249 (422)
T ss_pred --H-HHHHHHHHHHhCCEEEE
Confidence 2 24455666677766544
No 18
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.81 E-value=4.4e-18 Score=159.82 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=109.2
Q ss_pred CCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhHHHHHHhccccccccCCCCCCcccceeeEEec-Ccce
Q 018792 147 GIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPF 225 (350)
Q Consensus 147 ~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~ 225 (350)
++.+||+|++||.|.||+. ...+........+.++++++....+.+... ..+..++..++ ++.+
T Consensus 106 ~i~~IDaVLiTH~H~DHlD-~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~--------------Gvp~~rv~~v~~Ge~i 170 (355)
T PRK11709 106 AIREIDAVLATHDHSDHID-VNVAAAVLQNCADHVKFIGPQACVDLWIGW--------------GVPKERCIVVKPGDVV 170 (355)
T ss_pred HCCCCCEEEECCCcccccC-hHHHHHHHhhcCCCcEEEEcHHHHHHHHhc--------------CCCcceEEEecCCCcE
Confidence 3578999999999999984 444333221112357789988887765442 11122455555 5789
Q ss_pred EeCCEEEEEEEcccCC-----------C---------ccEEEEEEC----cEEEeCCCCCCCcchhcccC--CCCEEEEc
Q 018792 226 TVQDLKITPLPVWHGA-----------G---------YRSLGFRFG----NICYISDVSEIPEETYPFLQ--DCEILIMD 279 (350)
Q Consensus 226 ~~~~~~v~~~~~~H~~-----------g---------~~s~g~~i~----~i~ysGDt~~~~~~~~~~~~--~~dlLi~e 279 (350)
.+++++|+++|+.|.. . ..++||+++ +++|+|||++++. +.+..+ ++|++++.
T Consensus 171 ~ig~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~~-~~~i~~~~~iDvall~ 249 (355)
T PRK11709 171 KVKDIKIHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSNY-FAKHGNDHQIDVALGS 249 (355)
T ss_pred EECCEEEEEEeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccHH-HHHHHhcCCCCEEEec
Confidence 9999999999996531 1 146899995 9999999998752 333222 58999986
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEEeecCC
Q 018792 280 ALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLM 317 (350)
Q Consensus 280 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~~vltH~~~~~ 317 (350)
..........|+++++++++++.+++++++++|+....
T Consensus 250 iG~~p~~~~~hm~p~ea~~~a~~l~ak~vIpiH~dtf~ 287 (355)
T PRK11709 250 YGENPRGITDKMTSIDILRMAESLNAKVVIPVHHDIWS 287 (355)
T ss_pred CCCCCCCCcCCCCHHHHHHHHHHcCCCEEEEEChhhcc
Confidence 65322234579999999999999999999999986643
No 19
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.80 E-value=5.1e-18 Score=170.30 Aligned_cols=177 Identities=22% Similarity=0.265 Sum_probs=111.4
Q ss_pred cceEEEEecCCCCCceEEEecCcchHH---HHHhhCC--cCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEe
Q 018792 111 NTSILIRYPGPSGRRNILIDAGKFFYH---SALRWFP--AYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYV 185 (350)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~~~~---~l~~~l~--~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~ 185 (350)
++|++|+. ++..||||||..... .....+. ...+.+||+|||||.|.||+|+++.+.... ...+||+
T Consensus 188 ~Sc~Ll~~----~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~g----~~gpIY~ 259 (630)
T TIGR03675 188 RSALLLST----PESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKYG----YDGPVYC 259 (630)
T ss_pred CCEEEEEE----CCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHhC----CCCceee
Confidence 47999995 788999999975421 1111111 234678999999999999999999987642 2468999
Q ss_pred chhhHHHHHHhccc---ccccc---CCCCCCcccc--eeeEEec-CcceEe-CCEEEEEEEcccCCCccEEEEEEC----
Q 018792 186 AMRDFEVMKKTHYY---LVDTS---GIIPGAAVSE--LQFNIID-EEPFTV-QDLKITPLPVWHGAGYRSLGFRFG---- 251 (350)
Q Consensus 186 ~~~~~~~l~~~~~~---~~~~~---~~~~~~~~~~--~~~~~i~-~~~~~~-~~~~v~~~~~~H~~g~~s~g~~i~---- 251 (350)
+..+.+.+...... ..... ..+....... ..+..++ ++.+.+ ++++++++++.|..|...+.+.++
T Consensus 260 T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHilGsa~~~~~i~dg~~ 339 (630)
T TIGR03675 260 TPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHILGSAIAHLHIGDGLY 339 (630)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCccccCceEEEEEECCCCE
Confidence 98877654321110 00000 0000000000 1233444 466777 589999999999997434445553
Q ss_pred cEEEeCCCCCCCcchhc----ccCCCCEEEEcccCCCCCCCCCCCHHHH
Q 018792 252 NICYISDVSEIPEETYP----FLQDCEILIMDALRPDRSSSTHFGLPRA 296 (350)
Q Consensus 252 ~i~ysGDt~~~~~~~~~----~~~~~dlLi~e~~~~~~~~~~H~~~~~~ 296 (350)
+++|+||.+.....++. ...++|+||+|+|+.... ..|....++
T Consensus 340 ~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~ESTYg~~~-~~~~~r~~~ 387 (630)
T TIGR03675 340 NIVYTGDFKYEKTRLLDPAVNKFPRVETLIMESTYGGRD-DYQPSREEA 387 (630)
T ss_pred EEEEeCCCCCCCCcCccchhhcCCCCCEEEEeCccCCCC-CCCCCHHHH
Confidence 79999999876544332 235799999999997632 224444443
No 20
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.72 E-value=1.4e-16 Score=136.11 Aligned_cols=142 Identities=23% Similarity=0.231 Sum_probs=97.6
Q ss_pred ccccceEEEEecCCCCCceEEEecCcchHHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEech
Q 018792 108 RRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAM 187 (350)
Q Consensus 108 ~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~ 187 (350)
.+.++|++|+. +++.+|||||.+...++.+.++..+..+|++|++||.|.||++|+..+.+. +++++|+++
T Consensus 3 ~~~~~~~li~~----~~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~-----~~~~i~~~~ 73 (183)
T smart00849 3 GVGVNSYLVEG----DGGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA-----PGAPVYAPE 73 (183)
T ss_pred ccceeEEEEEe----CCceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC-----CCCcEEEch
Confidence 35678999995 788999999976543443334455678999999999999999999888764 367899999
Q ss_pred hhHHHHHHhccccccccCCCCCCcccceeeEEec-CcceEeCCEEEEEEEc-ccCCCccEEEEEEC--cEEEeCCCCCCC
Q 018792 188 RDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPV-WHGAGYRSLGFRFG--NICYISDVSEIP 263 (350)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~v~~~~~-~H~~g~~s~g~~i~--~i~ysGDt~~~~ 263 (350)
...+.+........... .. ......+..+. ++.+.+++.+++.++. .|++ .+++|.++ +++|+||+....
T Consensus 74 ~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~~~~~~~~~~~vl~~gD~~~~~ 147 (183)
T smart00849 74 GTAELLKDLLKLGGALG-AE---APPPPPDRTLKDGEELDLGGLELEVIHTPGHTP--GSIVLYLPEGKILFTGDLLFSG 147 (183)
T ss_pred hhhHHHhccchhccccC-cC---CCCCccceecCCCCEEEeCCceEEEEECCCCCC--CcEEEEECCCCEEEECCeeecc
Confidence 98887764322100000 00 00111233333 5778888777776666 3677 45678886 899999998765
Q ss_pred c
Q 018792 264 E 264 (350)
Q Consensus 264 ~ 264 (350)
+
T Consensus 148 ~ 148 (183)
T smart00849 148 G 148 (183)
T ss_pred C
Confidence 4
No 21
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.70 E-value=6.8e-16 Score=144.74 Aligned_cols=229 Identities=21% Similarity=0.244 Sum_probs=138.6
Q ss_pred ccceEEEEecCCCCCceEEEecCcchHH---HHHhhC--CcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEE
Q 018792 110 LNTSILIRYPGPSGRRNILIDAGKFFYH---SALRWF--PAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIY 184 (350)
Q Consensus 110 ~~ss~lI~~~~~~~~~~iLID~G~~~~~---~l~~~l--~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~ 184 (350)
+.||+|+.+ ++..+|+|||..... ....+| ..+.+..+|||+|||.|.||+|-++.|.++.. .-|||
T Consensus 193 GRSa~lv~T----~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkYgy----~GPVY 264 (637)
T COG1782 193 GRSALLVST----PESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKYGY----DGPVY 264 (637)
T ss_pred cceeEEEec----CCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhhcCC----CCCee
Confidence 358999994 889999999975322 111111 23334579999999999999999998877542 45999
Q ss_pred echhhHHHHHHhcccccc---ccC---CCCCCcccc-e-eeEEec-CcceEe-CCEEEEEEEcccCCCccEEEEEEC---
Q 018792 185 VAMRDFEVMKKTHYYLVD---TSG---IIPGAAVSE-L-QFNIID-EEPFTV-QDLKITPLPVWHGAGYRSLGFRFG--- 251 (350)
Q Consensus 185 ~~~~~~~~l~~~~~~~~~---~~~---~~~~~~~~~-~-~~~~i~-~~~~~~-~~~~v~~~~~~H~~g~~s~g~~i~--- 251 (350)
+++.+.+.+.-.....++ ... .+....+.+ + ....++ ++.-.+ .++++++..+.|-.|.....+.|+
T Consensus 265 ~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~~HlHIGdGl 344 (637)
T COG1782 265 CTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGL 344 (637)
T ss_pred eCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhcceeeEEEecCCc
Confidence 988877654321110010 000 000000111 1 122233 333344 589999999999988556667787
Q ss_pred -cEEEeCCCCCCCcchhcc----cCCCCEEEEcccCCCCCCCCCCCHHHHHHHHHHh------CCCeEEEEEeecCCChh
Q 018792 252 -NICYISDVSEIPEETYPF----LQDCEILIMDALRPDRSSSTHFGLPRALEEVRKI------QPKRTLFIGMMHLMDHE 320 (350)
Q Consensus 252 -~i~ysGDt~~~~~~~~~~----~~~~dlLi~e~~~~~~~~~~H~~~~~~~~~~~~~------~~~~~vltH~~~~~~~~ 320 (350)
+++|+||..+..-.+++- ++.++.||+|+||.. ....+..-++|.+.+.+. +..++++--|.-. ...
T Consensus 345 yNi~yTGDfk~~~trLl~~A~n~FpRvEtlimEsTYGg-~~d~q~~R~eaE~~L~~vi~~t~~rGGKvLIP~fAVG-R~Q 422 (637)
T COG1782 345 YNIVYTGDFKFEKTRLLEPANNKFPRVETLIMESTYGG-RDDVQPPREEAEKELIKVINDTLKRGGKVLIPVFAVG-RSQ 422 (637)
T ss_pred eeEEEecccccceeeecChhhccCcchhheeeeeccCC-ccccCccHHHHHHHHHHHHHHHHhcCCeEEEEeeecc-ccc
Confidence 999999998765555433 356899999999973 224455566666655443 2233333334332 222
Q ss_pred hHHHHHHHhhhhCCCc-EEEcccCeEEEe
Q 018792 321 KVNEELLKLMETEGLD-VQLSYDGLRVPV 348 (350)
Q Consensus 321 ~~~~~l~~~~~~~~~~-v~ia~DGm~i~l 348 (350)
++.=.+.+.+++--.+ +-+.-|||..+.
T Consensus 423 EvM~VLee~mr~g~ipe~PVYlDGMI~Ea 451 (637)
T COG1782 423 EVMIVLEEAMRKGLIPEVPVYLDGMIWEA 451 (637)
T ss_pred eehhHHHHHHhcCCCCCCceeeeeeeeeh
Confidence 3333444555443333 778889998864
No 22
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.6e-14 Score=139.56 Aligned_cols=175 Identities=22% Similarity=0.222 Sum_probs=112.6
Q ss_pred cceEEEEecCCCCCceEEEecCcchHHHHHhhCCcC-CCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhh
Q 018792 111 NTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAY-GIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRD 189 (350)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~-~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~ 189 (350)
++|.+|+. ++..||+|||....... +...-. ...++|+|+|||.|.||+++++.+..... ..+||+++.+
T Consensus 14 ~s~~~l~~----~~~~il~D~G~~~~~~~-~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~~~~----~~~v~aT~~T 84 (427)
T COG1236 14 RSCVLLET----GGTRILLDCGLFPGDPS-PERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRNGF----EGPVYATPPT 84 (427)
T ss_pred cEEEEEEE----CCceEEEECCCCcCcCC-ccCCCCCCCCCcCEEEeccCchhhhcccHHHHHhcc----CCceeeccCH
Confidence 47999996 66999999998532221 111111 11269999999999999999999876431 3689999988
Q ss_pred HHHHHHhcccccccc-----CCCCCCccc--ceeeEEec-CcceEeCCEEEEEEEcccCCCccEEEEEEC----cEEEeC
Q 018792 190 FEVMKKTHYYLVDTS-----GIIPGAAVS--ELQFNIID-EEPFTVQDLKITPLPVWHGAGYRSLGFRFG----NICYIS 257 (350)
Q Consensus 190 ~~~l~~~~~~~~~~~-----~~~~~~~~~--~~~~~~i~-~~~~~~~~~~v~~~~~~H~~g~~s~g~~i~----~i~ysG 257 (350)
.+.+.-......... ..+...... ...+..++ ++++++++++|+++++.|.+|. -+|.++ +++|+|
T Consensus 85 ~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~AGHilGs--a~~~le~~~~~ilytG 162 (427)
T COG1236 85 AALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNAGHILGS--AAILLEVDGGRILYTG 162 (427)
T ss_pred HHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecCCCccce--eEEEEEeCCceEEEEe
Confidence 876543321111100 000000000 11334455 5789999999999999999964 445553 899999
Q ss_pred CCCCCCcchhcc---cCCCCEEEEcccCCCCCCCCCCCHHHHHHH
Q 018792 258 DVSEIPEETYPF---LQDCEILIMDALRPDRSSSTHFGLPRALEE 299 (350)
Q Consensus 258 Dt~~~~~~~~~~---~~~~dlLi~e~~~~~~~~~~H~~~~~~~~~ 299 (350)
|.......+..- ...+|+||+|+||.+ ..|....+..+.
T Consensus 163 D~~~~~~~l~~~a~~~~~~DvLI~EsTYg~---~~~~~r~~~e~~ 204 (427)
T COG1236 163 DVKRRKDRLLNGAELPPCIDVLIVESTYGD---RLHPNRDEVERR 204 (427)
T ss_pred ccCCCcCCCCCccccCCCCcEEEEecccCC---ccCCCHHHHHHH
Confidence 998654443322 222699999999976 555555544443
No 23
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.59 E-value=3.3e-14 Score=139.44 Aligned_cols=207 Identities=19% Similarity=0.252 Sum_probs=134.9
Q ss_pred cccceEEEEecCCCCCceEEEecCcchHHH-------H---HhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCC
Q 018792 109 RLNTSILIRYPGPSGRRNILIDAGKFFYHS-------A---LRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQ 178 (350)
Q Consensus 109 r~~ss~lI~~~~~~~~~~iLID~G~~~~~~-------l---~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~ 178 (350)
.+.+++++++ ++..+++|||..+... + ..++. ....+|++|||||.|.||+|+++++....
T Consensus 20 iGkN~~vve~----~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~-~n~~kvkgI~lTHgHeDHIGaip~ll~~~---- 90 (555)
T COG0595 20 IGKNMYVVEY----GDDIIILDAGLKFPEDDLLGVDLIIPDFSYLE-ENKDKVKGIFLTHGHEDHIGALPYLLKQV---- 90 (555)
T ss_pred hccceEEEEE----CCcEEEEECccccCccccccccEEecChHHhh-hccccceEEEecCCchhhccchHHHHhcC----
Confidence 4457899997 7899999999643211 0 01111 12358999999999999999999998743
Q ss_pred ccccEEechhhHHHHHHhccccccccCCCCCCcccceeeEEec-CcceEeCCEEEEEEEcccCCCccEEEEEEC----cE
Q 018792 179 RHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGAGYRSLGFRFG----NI 253 (350)
Q Consensus 179 ~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~v~~~~~~H~~g~~s~g~~i~----~i 253 (350)
..+|||+++-+...++......-. .....++..++ ++.++++++.|+++++.|+.. .++||.+. .|
T Consensus 91 ~~~piy~s~lt~~Li~~k~~~~~~--------~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIP-ds~g~~i~Tp~G~I 161 (555)
T COG0595 91 LFAPIYASPLTAALIKEKLKEHGL--------FKNENELHEVKPGSEIKFGSFEVEFFPVTHSIP-DSLGIVIKTPEGNI 161 (555)
T ss_pred CcCceecCHhhHHHHHHHHHHhcc--------ccccCceEEeCCCCeEEeCcEEEEEEeecccCc-cceEEEEECCCccE
Confidence 238999999998888765331000 01112455565 467899999999999999984 69999996 89
Q ss_pred EEeCCCCCCCc----------chhcccC-CCCEEEEcccCCCCCCCCCCCH-----HHHHHHHHHhCCCeEEEEEeecCC
Q 018792 254 CYISDVSEIPE----------ETYPFLQ-DCEILIMDALRPDRSSSTHFGL-----PRALEEVRKIQPKRTLFIGMMHLM 317 (350)
Q Consensus 254 ~ysGDt~~~~~----------~~~~~~~-~~dlLi~e~~~~~~~~~~H~~~-----~~~~~~~~~~~~~~~vltH~~~~~ 317 (350)
+|+||....+. .+.+..+ ++++|+.|+|.... ++.+.. +.+.+.++..+ .+++++-++...
T Consensus 162 v~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~--pg~t~SE~~v~~~l~~i~~~a~-grVIv~tfaSni 238 (555)
T COG0595 162 VYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAEN--PGFTPSESEVGENLEDIIRNAK-GRVIVTTFASNI 238 (555)
T ss_pred EEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccCC--CCCCCCHHHHHHHHHHHHHhCC-CcEEEEEchhhH
Confidence 99999843211 1233333 48999999998652 222222 23344444444 355555444322
Q ss_pred ChhhHHHHHHHhhhhCCCcEEE
Q 018792 318 DHEKVNEELLKLMETEGLDVQL 339 (350)
Q Consensus 318 ~~~~~~~~l~~~~~~~~~~v~i 339 (350)
. . -+++.+.+++.|.++.+
T Consensus 239 ~--R-i~~i~~~A~~~gR~vvv 257 (555)
T COG0595 239 E--R-IQTIIDAAEKLGRKVVV 257 (555)
T ss_pred H--H-HHHHHHHHHHcCCeEEE
Confidence 1 2 35556777777776654
No 24
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.55 E-value=5.9e-14 Score=134.98 Aligned_cols=126 Identities=19% Similarity=0.285 Sum_probs=88.4
Q ss_pred ccceEEEEecCCCCCceEEEecCcc-hHHHHHhhCC-cCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEech
Q 018792 110 LNTSILIRYPGPSGRRNILIDAGKF-FYHSALRWFP-AYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAM 187 (350)
Q Consensus 110 ~~ss~lI~~~~~~~~~~iLID~G~~-~~~~l~~~l~-~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~ 187 (350)
..+||||. +++.+|||+|.+ ....+.+.++ ..++.+|++|++||.|.||++|+..+.+.. +.++||+++
T Consensus 32 ~~NsyLI~-----~~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~----p~a~V~~~~ 102 (394)
T PRK11921 32 SYNSYLIK-----DEKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEI----PDTPIYCTK 102 (394)
T ss_pred EEEEEEEe-----CCCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHC----CCCEEEECH
Confidence 35789998 457899999964 3334444333 345678999999999999999999887643 468999999
Q ss_pred hhHHHHHHhccccccccCCCCCCcccceeeEEec-CcceEeCCEEEEEEEcc--cCCCccEEEEEEC-cEEEeCCC
Q 018792 188 RDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVW--HGAGYRSLGFRFG-NICYISDV 259 (350)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~v~~~~~~--H~~g~~s~g~~i~-~i~ysGDt 259 (350)
...+.+...+.. ...+..+. ++.+.+|+.++++++++ |++++ .+.|.-+ +++|+||+
T Consensus 103 ~~~~~l~~~~~~--------------~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~-~~~y~~~~~vLFsgD~ 163 (394)
T PRK11921 103 NGAKSLKGHYHQ--------------DWNFVVVKTGDRLEIGSNELIFIEAPMLHWPDS-MFTYLTGDNILFSNDA 163 (394)
T ss_pred HHHHHHHHHhCC--------------CCceEEeCCCCEEeeCCeEEEEEeCCCCCCCCc-eEEEEcCCCEEEecCc
Confidence 887766543210 01233343 57899999888877444 99963 3334433 89999998
No 25
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.54 E-value=1.6e-13 Score=123.66 Aligned_cols=119 Identities=24% Similarity=0.401 Sum_probs=85.4
Q ss_pred ccceEEEEecCCCCCceEEEecCcchHHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhh
Q 018792 110 LNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRD 189 (350)
Q Consensus 110 ~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~ 189 (350)
.|.+|+|.. .+++.+|||+|.. ..+.+.+++.+. ++++|++||.|.||++|+..+.+.+ +++||+++..
T Consensus 9 dN~~yli~~---~~~~~ilID~g~~--~~i~~~l~~~g~-~l~~Il~TH~H~DHigG~~~l~~~~-----~~~V~~~~~~ 77 (248)
T TIGR03413 9 DNYIWLLHD---PDGQAAVVDPGEA--EPVLDALEARGL-TLTAILLTHHHHDHVGGVAELLEAF-----PAPVYGPAEE 77 (248)
T ss_pred cEEEEEEEc---CCCCEEEEcCCCh--HHHHHHHHHcCC-eeeEEEeCCCCccccCCHHHHHHHC-----CCeEEecccc
Confidence 367899884 1247999999975 344555555665 7999999999999999999987643 3789998753
Q ss_pred HHHHHHhccccccccCCCCCCcccceeeEEecCcceEeCCEEEEEEEcc-cCCCccEEEEEEC--cEEEeCCCCCC
Q 018792 190 FEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG--NICYISDVSEI 262 (350)
Q Consensus 190 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~~~~~~-H~~g~~s~g~~i~--~i~ysGDt~~~ 262 (350)
.. +. ....+.+++.+.+++.+++.++++ |++| +++|.+. +++|+||+...
T Consensus 78 ------~~----------~~-----~~~~v~~g~~~~~g~~~i~v~~tpGHT~g--~i~~~~~~~~~lftGDtl~~ 130 (248)
T TIGR03413 78 ------RI----------PG-----ITHPVKDGDTVTLGGLEFEVLAVPGHTLG--HIAYYLPDSPALFCGDTLFS 130 (248)
T ss_pred ------cC----------CC-----CcEEeCCCCEEEECCEEEEEEECCCCCcc--cEEEEECCCCEEEEcCcccc
Confidence 00 00 111223457888988888877766 9885 4778775 89999999653
No 26
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.54 E-value=4.5e-13 Score=136.83 Aligned_cols=199 Identities=16% Similarity=0.263 Sum_probs=132.3
Q ss_pred CceEEEEEeccCCCCcCccCccCCCCCCCCCCccccCCCCCCccccceEEEEecCCCCCceEEEecCcch------HHHH
Q 018792 66 QQSEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFF------YHSA 139 (350)
Q Consensus 66 ~~~~i~~LGtG~~~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~------~~~l 139 (350)
+..+|+||..|.+ .|++|+. +++.+|||+|... ...+
T Consensus 438 ~~~~v~~lDVGqG---------------------------------daili~~----~~~~iLIDtG~~~~~~~~~~~~l 480 (662)
T TIGR00361 438 SSWQVDMLDVGQG---------------------------------LAMFIGA----NGKGILYDTGEPWREGSLGEKVI 480 (662)
T ss_pred CCEEEEEEecCCc---------------------------------eEEEEEE----CCeEEEEeCCCCCCCCCccHHHH
Confidence 4689999998876 3889995 6689999999742 2346
Q ss_pred HhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhHHHHHHhccccccccCCCCCCcccceeeE-
Q 018792 140 LRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFN- 218 (350)
Q Consensus 140 ~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 218 (350)
.++|+..|+. ||+|++||.|.||++|+..+.+.. +..+++.+.... .. + ....
T Consensus 481 ~p~L~~~Gi~-ID~lilTH~d~DHiGGl~~ll~~~----~v~~i~~~~~~~----~~------------~-----~~~~~ 534 (662)
T TIGR00361 481 IPFLTAKGIK-LEALILSHADQDHIGGAEIILKHH----PVKRLVIPKGFV----EE------------G-----VAIEE 534 (662)
T ss_pred HHHHHHcCCC-cCEEEECCCchhhhCcHHHHHHhC----CccEEEeccchh----hC------------C-----CceEe
Confidence 6777788887 999999999999999999988754 234677664410 00 0 0111
Q ss_pred EecCcceEeCCEEEEEEEcccC----CCccEEEEEEC----cEEEeCCCCCCCcc-hhccc--CCCCEEEEcccCCCCCC
Q 018792 219 IIDEEPFTVQDLKITPLPVWHG----AGYRSLGFRFG----NICYISDVSEIPEE-TYPFL--QDCEILIMDALRPDRSS 287 (350)
Q Consensus 219 ~i~~~~~~~~~~~v~~~~~~H~----~g~~s~g~~i~----~i~ysGDt~~~~~~-~~~~~--~~~dlLi~e~~~~~~~~ 287 (350)
...++.+++++++++.+..... .+..|+.++++ +++++||.....|+ +.+.. -++|+|+......+.+
T Consensus 535 ~~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~~~~L~tGD~~~~~E~~l~~~~~~l~~dvLk~~HHGS~~S- 613 (662)
T TIGR00361 535 CKRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDDGGNSWLLTGDLEAEGEQEVMRVFPNIKADVLQVGHHGSKTS- 613 (662)
T ss_pred cCCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEECCeeEEEecCCCHHHHHHHHhcccCcCccEEEeCCCCCCCC-
Confidence 2235677888888887642211 12356777775 89999999765443 22221 2478888855443322
Q ss_pred CCCCCHHHHHHHHHHhCCCeEEEEEe-ecCCChhhHHHHHHHhhhhCCCcE
Q 018792 288 STHFGLPRALEEVRKIQPKRTLFIGM-MHLMDHEKVNEELLKLMETEGLDV 337 (350)
Q Consensus 288 ~~H~~~~~~~~~~~~~~~~~~vltH~-~~~~~~~~~~~~l~~~~~~~~~~v 337 (350)
...+++++++|+..+++-. .+++.++ .++..+..++.|.++
T Consensus 614 -------ss~~fl~~v~P~~aiiS~g~~N~yghP--~~~vl~rl~~~g~~~ 655 (662)
T TIGR00361 614 -------TSEELIQQVQPKVAIISAGRNNRWHHP--HQKVLQRLQRHSIRV 655 (662)
T ss_pred -------ChHHHHHhcCCCEEEEECCCCCCCCCC--hHHHHHHHHHCCCeE
Confidence 2368899999999888743 3556655 344556666777654
No 27
>PRK11539 ComEC family competence protein; Provisional
Probab=99.52 E-value=4.6e-13 Score=138.45 Aligned_cols=205 Identities=17% Similarity=0.206 Sum_probs=134.2
Q ss_pred CCCceEEEEEeccCCCCcCccCccCCCCCCCCCCccccCCCCCCccccceEEEEecCCCCCceEEEecCcc------hHH
Q 018792 64 PAQQSEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKF------FYH 137 (350)
Q Consensus 64 ~~~~~~i~~LGtG~~~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~------~~~ 137 (350)
+.++.+|+||..|.++ |++|+. +++.+|||+|.. ...
T Consensus 497 ~~~~~~v~~lDVGqG~---------------------------------a~li~~----~~~~lLiDtG~~~~~~~~~~~ 539 (755)
T PRK11539 497 REYEWRVDMLDVGHGL---------------------------------AVVIER----NGKAILYDTGNAWPTGDSAQQ 539 (755)
T ss_pred CCCcEEEEEEEccCce---------------------------------EEEEEE----CCEEEEEeCCCCCCCCcchHH
Confidence 3577999999988763 788984 789999999974 124
Q ss_pred HHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhHHHHHHhccccccccCCCCCCcccceee
Q 018792 138 SALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQF 217 (350)
Q Consensus 138 ~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (350)
.+..+|+..|+ ++|+|++||.|.||++|+..+.+.. +..++|.+..... . .
T Consensus 540 ~i~P~L~~~Gi-~lD~lilSH~d~DH~GGl~~Ll~~~----~~~~i~~~~~~~~-----~-------------------~ 590 (755)
T PRK11539 540 VIIPWLRWHGL-TPEGIILSHEHLDHRGGLASLLHAW----PMAWIRSPLNWAN-----H-------------------L 590 (755)
T ss_pred HHHHHHHHcCC-CcCEEEeCCCCcccCCCHHHHHHhC----CcceeeccCcccC-----c-------------------c
Confidence 46677778888 6999999999999999999998754 3456776531100 0 0
Q ss_pred EEecCcceEeCCEEEEEEEcc-cC---CCccEEEEEEC----cEEEeCCCCCCCcc-hhccc---CCCCEEEEcccCCCC
Q 018792 218 NIIDEEPFTVQDLKITPLPVW-HG---AGYRSLGFRFG----NICYISDVSEIPEE-TYPFL---QDCEILIMDALRPDR 285 (350)
Q Consensus 218 ~~i~~~~~~~~~~~v~~~~~~-H~---~g~~s~g~~i~----~i~ysGDt~~~~~~-~~~~~---~~~dlLi~e~~~~~~ 285 (350)
....++.++.++++++.+... |. .+..|+.++++ +++++||.....|+ +.+.. -.+|+++......+.
T Consensus 591 ~~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~~~LltGDi~~~~E~~Ll~~~~~~l~~dvL~vpHHGS~t 670 (755)
T PRK11539 591 PCVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDDGKHSILLTGDLEAQAEQKLLSRYWQQLAATLLQVPHHGSNT 670 (755)
T ss_pred cccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEECCEEEEEEeCCChHHHHHHHhcCccCcCCCEEEeCCCCCCC
Confidence 012345677788888766322 32 12356777775 89999998654333 23221 248888885544332
Q ss_pred CCCCCCCHHHHHHHHHHhCCCeEEEEEe-ecCCChhhHHHHHHHhhhhCCCcE-EEcccCe
Q 018792 286 SSSTHFGLPRALEEVRKIQPKRTLFIGM-MHLMDHEKVNEELLKLMETEGLDV-QLSYDGL 344 (350)
Q Consensus 286 ~~~~H~~~~~~~~~~~~~~~~~~vltH~-~~~~~~~~~~~~l~~~~~~~~~~v-~ia~DGm 344 (350)
+ ...+++++++|+..+++-. .+++.++ .++..++.++.|.++ ..+.+|+
T Consensus 671 S--------ss~~fl~~v~P~~aiiS~g~~NryghP--~~~v~~rl~~~g~~~~~T~~~G~ 721 (755)
T PRK11539 671 S--------SSLPFIRAVNGKVALASASRYNAWRLP--SVKVKQRYQQQGYQWRDTPHSGQ 721 (755)
T ss_pred C--------ChHHHHHhcCCCEEEEeCCCCCCCCCC--CHHHHHHHHHcCCeEEEcCCCCc
Confidence 2 2377999999999888743 4556554 234445555666543 3455554
No 28
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=99.52 E-value=1.2e-12 Score=121.32 Aligned_cols=233 Identities=18% Similarity=0.276 Sum_probs=136.7
Q ss_pred cccceEEEEecCCCCCceEEEecCcchHH--HHH-h-hCCc-C----C----------------CCCccEEEecCCcccc
Q 018792 109 RLNTSILIRYPGPSGRRNILIDAGKFFYH--SAL-R-WFPA-Y----G----------------IRTIDAVIITHSHADA 163 (350)
Q Consensus 109 r~~ss~lI~~~~~~~~~~iLID~G~~~~~--~l~-~-~l~~-~----~----------------~~~Id~V~iTH~H~DH 163 (350)
-+.+++|++.. ..+..+-+|+|..... .+. + .+.. . . ...|.+.+|||.|.||
T Consensus 15 ~nls~~L~~~~--~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~~ylItH~HLDH 92 (335)
T PF02112_consen 15 GNLSAYLVRSI--GSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIKGYLITHPHLDH 92 (335)
T ss_pred CCcceeeeeec--CcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhheEEecCCchhh
Confidence 34689999963 2466788999974211 111 1 0000 0 0 1478899999999999
Q ss_pred cCChhHHHHhhccC-CccccEEechhhHHHHHHhccccccccCC---CCCCcccceeeEEecC-c-------ceEe----
Q 018792 164 IGGLDDLRDWTNNV-QRHIPIYVAMRDFEVMKKTHYYLVDTSGI---IPGAAVSELQFNIIDE-E-------PFTV---- 227 (350)
Q Consensus 164 ~~Gl~~l~~~~~~~-~~~~~v~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~-~-------~~~~---- 227 (350)
+.||..-....... ..+.+||+-+.+.+.+++..-...-+... ..+......++..+.. + ...+
T Consensus 93 i~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~ 172 (335)
T PF02112_consen 93 IAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPGELIPLNNTTLSVIPNE 172 (335)
T ss_pred HHHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeeccccceeecccccccccccc
Confidence 99985321111111 14578999999999998753222111111 0010011112222221 1 1111
Q ss_pred --CCEEEEEEEcccCCCc----cEEEEEEC------cEEEeCCCCCCCc-------chhccc------CCCCEEEEcccC
Q 018792 228 --QDLKITPLPVWHGAGY----RSLGFRFG------NICYISDVSEIPE-------ETYPFL------QDCEILIMDALR 282 (350)
Q Consensus 228 --~~~~v~~~~~~H~~g~----~s~g~~i~------~i~ysGDt~~~~~-------~~~~~~------~~~dlLi~e~~~ 282 (350)
.+..++++++.|+... .|.+|.|. .++|.||+++..- .+++.+ +...-+++||.+
T Consensus 173 ~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ap~I~~~~LkaI~IEcS~ 252 (335)
T PF02112_consen 173 FPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYAAPKIASGKLKAIFIECSY 252 (335)
T ss_pred ccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHHHhhccccccCEEEEEeCC
Confidence 1356777999998642 37888885 8999999986321 123322 246778999999
Q ss_pred CCC----CCCCCCCHHHHHHHHHHhCCC-----------eEEEEEeecCCChh-----hHHHHHHHhhhh--CCCcEEEc
Q 018792 283 PDR----SSSTHFGLPRALEEVRKIQPK-----------RTLFIGMMHLMDHE-----KVNEELLKLMET--EGLDVQLS 340 (350)
Q Consensus 283 ~~~----~~~~H~~~~~~~~~~~~~~~~-----------~~vltH~~~~~~~~-----~~~~~l~~~~~~--~~~~v~ia 340 (350)
++. .-.||+++...++.++.+... ++|++|+....... .+..++.++.++ .|+++.++
T Consensus 253 ~~~~~d~~LyGHLtP~~Li~EL~~L~~~~~~~~~~L~gL~VIItHIK~~~~~~~dpr~~Il~il~qL~~~n~LGv~fii~ 332 (335)
T PF02112_consen 253 PNSQPDSQLYGHLTPKHLIEELKVLASKVGQTSPPLKGLNVIITHIKPSLNDGPDPRDVILEILRQLAEENNLGVNFIIP 332 (335)
T ss_pred CCCCCchHhhccCCHHHHHHHHHHHHhccccccCCCCCCeEEEEEeCCcccCCCChHHHHHHHHHHHHhccCCceEEEEc
Confidence 764 458999999888887766321 58999988765421 223445555544 34566666
Q ss_pred ccC
Q 018792 341 YDG 343 (350)
Q Consensus 341 ~DG 343 (350)
..|
T Consensus 333 ~QG 335 (335)
T PF02112_consen 333 EQG 335 (335)
T ss_pred CCC
Confidence 554
No 29
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=99.51 E-value=2.4e-12 Score=116.88 Aligned_cols=212 Identities=19% Similarity=0.205 Sum_probs=127.3
Q ss_pred ceEEEEecCCCCCceEEEecCcchHHHHHh---hCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccE-Eech
Q 018792 112 TSILIRYPGPSGRRNILIDAGKFFYHSALR---WFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPI-YVAM 187 (350)
Q Consensus 112 ss~lI~~~~~~~~~~iLID~G~~~~~~l~~---~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v-~~~~ 187 (350)
+|++|+. ++.+||||+.......... ......+..+|+|+|||.|.||+..-....... .+.++ +++.
T Consensus 15 a~~lie~----~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~----~~~~~~~~p~ 86 (258)
T COG2220 15 AAFLIET----GGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRT----NKAPVVVVPL 86 (258)
T ss_pred eEEEEEE----CCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhc----CCCcEEEeHH
Confidence 5899996 7799999998753211111 011122467999999999999997432222211 12454 4454
Q ss_pred hhHHHHHHhccccccccCCCCCCcccceeeEEec-CcceEeCCEEEEEEEcccCCC-----------ccEEEEEEC----
Q 018792 188 RDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGAG-----------YRSLGFRFG---- 251 (350)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~v~~~~~~H~~g-----------~~s~g~~i~---- 251 (350)
.....+.+. .....++..++ ++.+++++++++.+++.|... ....+|.++
T Consensus 87 ~~~~~~~~~--------------g~~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~ 152 (258)
T COG2220 87 GAGDLLIRD--------------GVEAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGG 152 (258)
T ss_pred HHHHHHHhc--------------CCCcceEEeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEEEeCCc
Confidence 443333222 11122344443 367778888887777777541 235778886
Q ss_pred cEEEeCCCCCCCcchhcccCCCCEEEEcccCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEEee-cCCChhhHHHHHHHhh
Q 018792 252 NICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMM-HLMDHEKVNEELLKLM 330 (350)
Q Consensus 252 ~i~ysGDt~~~~~~~~~~~~~~dlLi~e~~~~~~~~~~H~~~~~~~~~~~~~~~~~~vltH~~-~~~~~~~~~~~l~~~~ 330 (350)
++++.||+++...........+|+++++..... ...++...++.+..+.+++++++.+|+. .........+.+....
T Consensus 153 ~iyh~GDt~~~~~~~~~~~~~~DvallPig~~~--~~~~~~~~~~~~~~~~l~~~~viP~Hy~~~~~~~~~~~~~~~~~~ 230 (258)
T COG2220 153 RVYHAGDTGYLFLIIEELDGPVDVALLPIGGYP--NATMMPPEAAVAAAEVLRPKRVIPMHYGPTFPPIEEDPEEFLHAL 230 (258)
T ss_pred eEEeccCccHHHHhhhhhcCCccEEEeccCCCC--CCccCCHHHHHHHHHHhcCCeEEeecccccCccccCCHHHHHHhh
Confidence 899999998721111222223799988776532 4678889999999999999999999988 3222222233444433
Q ss_pred hhCC--CcEEEcccCeEEE
Q 018792 331 ETEG--LDVQLSYDGLRVP 347 (350)
Q Consensus 331 ~~~~--~~v~ia~DGm~i~ 347 (350)
+..+ .++.+...|..+.
T Consensus 231 ~~~~~~~~~~~~~~g~~~~ 249 (258)
T COG2220 231 DAGGEPVKVFILELGESVE 249 (258)
T ss_pred hhcCCCceeeEecCCceEE
Confidence 3322 3455655555544
No 30
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.50 E-value=9.7e-13 Score=117.95 Aligned_cols=179 Identities=24% Similarity=0.387 Sum_probs=113.0
Q ss_pred CceEEEEEeccCCCCcCccCccCCCCCCCCCCccccCCCCCCccccceEEEEecCCCCCceEEEecCcchHHHHHhhCC-
Q 018792 66 QQSEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFP- 144 (350)
Q Consensus 66 ~~~~i~~LGtG~~~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~- 144 (350)
.+++++.||.|.-- +.+|+||.. ++++|++|||....-+-.+.+.
T Consensus 2 p~i~v~pLGAGQdv------------------------------GrSCilvsi----~Gk~iM~DCGMHMG~nD~rRfPd 47 (501)
T KOG1136|consen 2 PEIKVTPLGAGQDV------------------------------GRSCILVSI----GGKNIMFDCGMHMGFNDDRRFPD 47 (501)
T ss_pred CcceEEeccCCccc------------------------------CceEEEEEE----CCcEEEEecccccccCccccCCC
Confidence 46889999987642 247999996 8899999999742111111112
Q ss_pred -----cCC--CCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhHHH---HHHhccc-cccccCCCCCCc-c
Q 018792 145 -----AYG--IRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEV---MKKTHYY-LVDTSGIIPGAA-V 212 (350)
Q Consensus 145 -----~~~--~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~---l~~~~~~-~~~~~~~~~~~~-~ 212 (350)
+.+ -.-||.|+|||+|.||+|.|+++.+..+ -.-|||.+-.+.+. +.+.+.. ..+ ..|.. .
T Consensus 48 FSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~G---Y~GPIYMt~PTkaicPvlLeDyRkv~vd----~kGe~n~ 120 (501)
T KOG1136|consen 48 FSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVG---YDGPIYMTYPTKAICPVLLEDYRKVAVD----RKGESNF 120 (501)
T ss_pred ceeecCCCCcccceeEEEEeeecccccccccchHhhhC---CCCceEEecchhhhchHHHHHHHHHhcc----ccCcccc
Confidence 222 1579999999999999999999987542 24689987655432 2222111 111 01110 0
Q ss_pred ------cc--eeeEEec-CcceEe-CCEEEEEEEcccCCCccEEEEEEC--cEEEeCCCCCCCcchhc--ccC--CCCEE
Q 018792 213 ------SE--LQFNIID-EEPFTV-QDLKITPLPVWHGAGYRSLGFRFG--NICYISDVSEIPEETYP--FLQ--DCEIL 276 (350)
Q Consensus 213 ------~~--~~~~~i~-~~~~~~-~~~~v~~~~~~H~~g~~s~g~~i~--~i~ysGDt~~~~~~~~~--~~~--~~dlL 276 (350)
.. -++..++ .+.+.+ .++.|+++.+.|..|..-+-.+++ +++|+||-.-.|+.-+. ++. ..|+|
T Consensus 121 FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGAaMf~ikvGd~svvYTGDYnmTpDrHLGaA~id~~rpdlL 200 (501)
T KOG1136|consen 121 FTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGAAMFYIKVGDQSVVYTGDYNMTPDRHLGAAWIDKCRPDLL 200 (501)
T ss_pred eeHHHHHHHHhheeEeeehheEEecccceeeeeecccccceeEEEEEecceeEEEecCccCCcccccchhhhccccCceE
Confidence 00 0122222 245555 589999999999997433434455 99999999877765322 222 48999
Q ss_pred EEcccCCCC
Q 018792 277 IMDALRPDR 285 (350)
Q Consensus 277 i~e~~~~~~ 285 (350)
|.|.|+...
T Consensus 201 IsESTYatt 209 (501)
T KOG1136|consen 201 ISESTYATT 209 (501)
T ss_pred Eeeccceee
Confidence 999998653
No 31
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.49 E-value=3.1e-12 Score=116.53 Aligned_cols=194 Identities=20% Similarity=0.291 Sum_probs=121.4
Q ss_pred ceEEEEecCCCCCceEEEecCc-chHHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhH
Q 018792 112 TSILIRYPGPSGRRNILIDAGK-FFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF 190 (350)
Q Consensus 112 ss~lI~~~~~~~~~~iLID~G~-~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~ 190 (350)
.+++|+. +++.+|+|+|. .....+..+|+..|+.+||.+++||.|.||+||+..+++.+. --++|+.....
T Consensus 55 ~a~li~~----~~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~----v~~~~i~~~~~ 126 (293)
T COG2333 55 LATLIRS----EGKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIK----VPELWIYAGSD 126 (293)
T ss_pred eEEEEee----CCceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCC----CCcEEEeCCCC
Confidence 3788984 77899999999 233457788889999999999999999999999999987431 22455433221
Q ss_pred HHHHHhccccccccCCCCCCcccceeeE-EecCcceEeCCEEEEEEEcc-cCC---CccEEEEEEC----cEEEeCCCCC
Q 018792 191 EVMKKTHYYLVDTSGIIPGAAVSELQFN-IIDEEPFTVQDLKITPLPVW-HGA---GYRSLGFRFG----NICYISDVSE 261 (350)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~v~~~~~~-H~~---g~~s~g~~i~----~i~ysGDt~~ 261 (350)
...... +.+ ...... ...++.+.++++.++.+.-. ... +..|+..++. +++++||...
T Consensus 127 ~~~~~~---~~~----------~~~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~LlTGD~e~ 193 (293)
T COG2333 127 STSTFV---LRD----------AGIPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSFLLTGDLEE 193 (293)
T ss_pred ccchhh---hhh----------cCCceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEEeCCeeEEEecCCCc
Confidence 110000 000 011122 23357888999888765432 211 2346666665 9999999976
Q ss_pred CCcch-hcccC--CCCEEEEcccCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEEee-cCCChhhHHHHHHHhhhhCCCc
Q 018792 262 IPEET-YPFLQ--DCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMM-HLMDHEKVNEELLKLMETEGLD 336 (350)
Q Consensus 262 ~~~~~-~~~~~--~~dlLi~e~~~~~~~~~~H~~~~~~~~~~~~~~~~~~vltH~~-~~~~~~~~~~~l~~~~~~~~~~ 336 (350)
..|.. .+... ++|+|.+.......+. ..+++++++|+..++.-.. ++|.++ .++..++.++.+.+
T Consensus 194 ~~E~~l~~~~~~l~~dVLkV~HHGS~tSs--------s~~Fl~~v~Pk~AliS~G~~N~yghP--h~~Vl~rl~~~~~~ 262 (293)
T COG2333 194 KGEKLLKKYGPDLRADVLKVGHHGSKTSS--------SLAFLEAVKPKVALISSGRNNRYGHP--HQEVLERLQKRGIK 262 (293)
T ss_pred hhHHHHHhhCCCccceEEEeccCCccccC--------cHHHHHhcCCcEEEEEeeccCCCCCC--cHHHHHHHHhcCCe
Confidence 54432 22222 3788888555443332 3789999999998887544 667665 23333444444444
No 32
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.48 E-value=8e-13 Score=111.60 Aligned_cols=146 Identities=23% Similarity=0.358 Sum_probs=90.7
Q ss_pred cceEEEEecCCCCCceEEEecCcchHHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhH
Q 018792 111 NTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF 190 (350)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~ 190 (350)
.+|++|+. ++..||+|+...... . .....++|+|++||.|.||+.- ..+.. .
T Consensus 7 ha~~~ie~----~g~~iliDP~~~~~~-~-----~~~~~~~D~IlisH~H~DH~~~-~~l~~--------~--------- 58 (163)
T PF13483_consen 7 HASFLIET----GGKRILIDPWFSSVG-Y-----APPPPKADAILISHSHPDHFDP-ETLKR--------L--------- 58 (163)
T ss_dssp TTEEEEEE----TTEEEEES--TTT---T------TSS-B-SEEEESSSSTTT-CC-CCCCC--------H---------
T ss_pred eeEEEEEE----CCEEEEECCCCCccC-c-----ccccCCCCEEEECCCccccCCh-hHhhh--------c---------
Confidence 46999996 789999999964111 1 1123699999999999999974 11111 1
Q ss_pred HHHHHhccccccccCCCCCCcccceeeEEec-CcceEeCCEEEEEEEcccCC-----CccEEEEEEC----cEEEeCCCC
Q 018792 191 EVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGA-----GYRSLGFRFG----NICYISDVS 260 (350)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~v~~~~~~H~~-----g~~s~g~~i~----~i~ysGDt~ 260 (350)
.. +..++. ++.+++++++|+.++..|.. .....+|.++ ++++.||+.
T Consensus 59 ----~~-------------------~~~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~ 115 (163)
T PF13483_consen 59 ----DR-------------------DIHVVAPGGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTG 115 (163)
T ss_dssp ----HT-------------------SSEEE-TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--
T ss_pred ----cc-------------------ccEEEccceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCc
Confidence 00 112222 46788899999999998852 1246888886 999999998
Q ss_pred CCCc-chhcccCCCCEEEEcccCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEE
Q 018792 261 EIPE-ETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIG 312 (350)
Q Consensus 261 ~~~~-~~~~~~~~~dlLi~e~~~~~~~~~~H~~~~~~~~~~~~~~~~~~vltH 312 (350)
..++ +....+..+|+++..... ...++.+++++++++++||.++.+|
T Consensus 116 ~~~~~~~~~~~~~vDvl~~p~~g-----~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 116 FPPDDEQLKQLGKVDVLFLPVGG-----PFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp S---HHHHHHH-S-SEEEEE--T-----TTS--HHHHHHHHHHCT-SEEEEES
T ss_pred cCCCHHHHhcccCCCEEEecCCC-----CcccCHHHHHHHHHHcCCCEEEeCC
Confidence 6432 344556689999997655 4568899999999999999999987
No 33
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.48 E-value=4.5e-13 Score=131.39 Aligned_cols=126 Identities=22% Similarity=0.389 Sum_probs=86.9
Q ss_pred ccceEEEEecCCCCCceEEEecCcc-hHHHHHhhCC-cCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEech
Q 018792 110 LNTSILIRYPGPSGRRNILIDAGKF-FYHSALRWFP-AYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAM 187 (350)
Q Consensus 110 ~~ss~lI~~~~~~~~~~iLID~G~~-~~~~l~~~l~-~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~ 187 (350)
..+||||. +++.+|||+|.. ....+.+.+. ..++.+|++|++||.|.||++|+..+.+.. +.++||+++
T Consensus 34 t~NsYLI~-----~~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~----p~a~V~~s~ 104 (479)
T PRK05452 34 SYNSYLIR-----EEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQI----PDTPIYCTA 104 (479)
T ss_pred EEEEEEEE-----CCCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHC----CCCEEEECH
Confidence 45899998 468899999963 3334444333 345678999999999999999999887643 468999999
Q ss_pred hhHHHHHHhccccccccCCCCCCcccceeeEEec-CcceEeC-CEEEEEEEc--ccCCCccEEEEEE-C-cEEEeCCC
Q 018792 188 RDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQ-DLKITPLPV--WHGAGYRSLGFRF-G-NICYISDV 259 (350)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~-~~~v~~~~~--~H~~g~~s~g~~i-~-~i~ysGDt 259 (350)
.....+..... .+..++..+. ++.+.+| +.+++.+.+ .|+++ ++.+.+ + +++|+||.
T Consensus 105 ~~~~~l~~~~~-------------~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pg--s~~~y~~~~~vLFsgD~ 167 (479)
T PRK05452 105 NAIDSINGHHH-------------HPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPD--SMMTYLTGDAVLFSNDA 167 (479)
T ss_pred HHHHHHHHhhc-------------CCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCC--ceEEEEcCCCEEEeccc
Confidence 88776654311 0112344554 5778888 455554444 49985 344444 3 99999996
No 34
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.47 E-value=7.2e-14 Score=119.52 Aligned_cols=184 Identities=25% Similarity=0.208 Sum_probs=97.0
Q ss_pred cccceEEEEecCCCCCceEEEecCcchHHHHHh--hCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEec
Q 018792 109 RLNTSILIRYPGPSGRRNILIDAGKFFYHSALR--WFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVA 186 (350)
Q Consensus 109 r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~--~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~ 186 (350)
..++|++|+. +++.||||||......... ........+|++||+||.|.||++|+..+.+... ...++..
T Consensus 4 ~~~n~~li~~----~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~----~~~~~~~ 75 (194)
T PF00753_consen 4 GGSNSYLIEG----GDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGP----VVIIYSS 75 (194)
T ss_dssp EEEEEEEEEE----TTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTT----EEEEEEH
T ss_pred eeEEEEEEEE----CCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccc----eeeeecc
Confidence 3568999995 8899999999975433221 1224566899999999999999999999987641 2333333
Q ss_pred hhhHHHHHHhccccccccCCCCCCcccceeeEEecC-cceEeCCEEEEEEEcccCCCccEEEEEEC--cEEEeCCCCCCC
Q 018792 187 MRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQDLKITPLPVWHGAGYRSLGFRFG--NICYISDVSEIP 263 (350)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~v~~~~~~H~~g~~s~g~~i~--~i~ysGDt~~~~ 263 (350)
................... ............. .....+...+...+. |..+...+.+.+. +++|+||.....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~vlftGD~~~~~ 150 (194)
T PF00753_consen 76 ADAAKAIRPPDRDSASRRG----PAVPPPPIIDEDEDDLEIGGDRILFIIPG-PGHGSDSLIIYLPGGKVLFTGDLLFSN 150 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHESEEEEEETTTEEEEETTEEEEEEES-SSSSTTEEEEEETTTTEEEEETTSCTT
T ss_pred ccccccccccccccccccc----cccccccceeeecccccccccccccceec-cccCCcceEEEeCCCcEEEeeeEeccC
Confidence 3332222111100000000 0000011111222 233344444444443 4444455555555 999999997754
Q ss_pred cchhcccCCCCEEEEcccC--CCCCCCCCCCHHHHHHHHHHhCCCeEEEEE
Q 018792 264 EETYPFLQDCEILIMDALR--PDRSSSTHFGLPRALEEVRKIQPKRTLFIG 312 (350)
Q Consensus 264 ~~~~~~~~~~dlLi~e~~~--~~~~~~~H~~~~~~~~~~~~~~~~~~vltH 312 (350)
....... + .... .......+....+.++.+.+++++.++..|
T Consensus 151 ~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~gH 194 (194)
T PF00753_consen 151 EHPNPDP---D----LPLRGADVRYGSNWEESIEALRRLEALDPEVIIPGH 194 (194)
T ss_dssp TSSSSST---S----HTTTTHTTSHTTHHHHHHHHHHHHHTSTTSEEEESS
T ss_pred Ccccccc---c----cccccccccCcHHHHHHHHHHHHHHCCCCCEEEeCc
Confidence 3222211 1 0000 000112223344556666677888877654
No 35
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.46 E-value=8.7e-13 Score=119.12 Aligned_cols=119 Identities=18% Similarity=0.247 Sum_probs=81.6
Q ss_pred cceEEEEecCCCCCceEEEecCcchHHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhH
Q 018792 111 NTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF 190 (350)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~ 190 (350)
|.+|++.. .+++.+|||+|.. ..+.+.+++.+. ++++|++||.|.||++|+..+.+.+ +.++||++....
T Consensus 12 Ny~~li~~---~~~~~ilIDpg~~--~~vl~~l~~~g~-~l~~IllTH~H~DHigG~~~l~~~~----~~~~V~~~~~~~ 81 (251)
T PRK10241 12 NYIWVLND---EAGRCLIVDPGEA--EPVLNAIAENNW-QPEAIFLTHHHHDHVGGVKELVEKF----PQIVVYGPQETQ 81 (251)
T ss_pred eEEEEEEc---CCCcEEEECCCCh--HHHHHHHHHcCC-ccCEEEeCCCCchhhccHHHHHHHC----CCCEEEeccccc
Confidence 56777764 3467899999975 345555555665 6899999999999999999988753 357899875421
Q ss_pred HHHHHhccccccccCCCCCCcccceeeEEecCcceEeCCEEEEEEEcc-cCCCccEEEEEECcEEEeCCCCCC
Q 018792 191 EVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFGNICYISDVSEI 262 (350)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~~~~~~-H~~g~~s~g~~i~~i~ysGDt~~~ 262 (350)
. .+ ....+-+++.+.+++.+++.+.++ |++|+ ++|....++|+||+-..
T Consensus 82 ~----------------~~-----~~~~v~~g~~i~ig~~~~~vi~tPGHT~gh--i~~~~~~~lFtGDtlf~ 131 (251)
T PRK10241 82 D----------------KG-----TTQVVKDGETAFVLGHEFSVFATPGHTLGH--ICYFSKPYLFCGDTLFS 131 (251)
T ss_pred c----------------cC-----CceEeCCCCEEEeCCcEEEEEEcCCCCccc--eeeecCCcEEEcCeecc
Confidence 1 00 011122356788888766665544 99965 55555689999998643
No 36
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.45 E-value=6.5e-13 Score=123.24 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=84.2
Q ss_pred cceEEEEecCCCCCceEEEecCcchHHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhH
Q 018792 111 NTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF 190 (350)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~ 190 (350)
|.+|+|... ..+..++||+|.. ..+.+.+++.+ .+|++|++||.|+||++|+..|.+.+ +++||+++...
T Consensus 87 Ny~Yli~d~--~t~~~~vVDP~~a--~~vl~~l~~~g-~~L~~ILlTH~H~DH~GG~~~L~~~~-----ga~V~g~~~~~ 156 (329)
T PLN02398 87 NYAYLLHDE--DTGTVGVVDPSEA--VPVIDALSRKN-RNLTYILNTHHHYDHTGGNLELKARY-----GAKVIGSAVDK 156 (329)
T ss_pred eEEEEEEEC--CCCEEEEEcCCCH--HHHHHHHHhcC-CCceEEEECCCCchhhCCHHHHHHhc-----CCEEEEehHHh
Confidence 578988642 2357899999864 33445454455 48999999999999999999997753 47999987654
Q ss_pred HHHHHhccccccccCCCCCCcccceeeEEecCcceEeCCEEEEEEEcc-cCCCccEEEEEEC--cEEEeCCCCCC
Q 018792 191 EVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG--NICYISDVSEI 262 (350)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~~~~~~-H~~g~~s~g~~i~--~i~ysGDt~~~ 262 (350)
+.+ ++ .+..+-+++.+.+++.+++.+.++ |++|+ ++|.+. +++|+||+-..
T Consensus 157 ~~i--------------~~-----~d~~v~dGd~i~lgg~~l~vi~tPGHT~Gh--I~~~~~~~~vLFtGDtLf~ 210 (329)
T PLN02398 157 DRI--------------PG-----IDIVLKDGDKWMFAGHEVLVMETPGHTRGH--ISFYFPGSGAIFTGDTLFS 210 (329)
T ss_pred hhc--------------cC-----CcEEeCCCCEEEECCeEEEEEeCCCcCCCC--EEEEECCCCEEEECCCcCC
Confidence 321 01 122223457788888777665554 99965 666664 79999999653
No 37
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.44 E-value=1.3e-11 Score=108.27 Aligned_cols=75 Identities=31% Similarity=0.400 Sum_probs=58.3
Q ss_pred cccceEEEEecCCCCCceEEEecCcchHHHHHhhCC--cCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEec
Q 018792 109 RLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFP--AYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVA 186 (350)
Q Consensus 109 r~~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~--~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~ 186 (350)
+.+-|+||+. ++++||+|+|.... .+..+++ +.++.+||+|+|||.|+||++||..+.+.. .+.++||++
T Consensus 20 ~hGfS~LVE~----~~~riLFDtG~~~~-~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~---~~~i~v~ah 91 (259)
T COG1237 20 EHGFSALVED----EGTRILFDTGTDSD-VLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEEN---NPGIPVYAH 91 (259)
T ss_pred cCceEEEEEc----CCeEEEEeCCCCcH-HHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhcc---CCCceEEeC
Confidence 4567999994 77899999996532 2333333 455679999999999999999999887643 357899999
Q ss_pred hhhHH
Q 018792 187 MRDFE 191 (350)
Q Consensus 187 ~~~~~ 191 (350)
+....
T Consensus 92 p~af~ 96 (259)
T COG1237 92 PDAFK 96 (259)
T ss_pred hHHHh
Confidence 98877
No 38
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.40 E-value=3.5e-12 Score=115.36 Aligned_cols=118 Identities=20% Similarity=0.280 Sum_probs=79.9
Q ss_pred cceEEEEecCCCCCceEEEecCcchHHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhH
Q 018792 111 NTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF 190 (350)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~ 190 (350)
|.+|+|... ..+..+|||+|.. ..+.+.+++.+. +|++|++||.|+||++|+..|.+.+ +.++||++....
T Consensus 12 Ny~Yli~d~--~~~~~vlIDp~~~--~~il~~l~~~g~-~l~~Il~TH~H~DH~gG~~~l~~~~----~~~~V~~~~~~~ 82 (258)
T PLN02469 12 NYAYLIIDE--STKDAAVVDPVDP--EKVLQAAHEHGA-KIKLVLTTHHHWDHAGGNEKIKKLV----PGIKVYGGSLDN 82 (258)
T ss_pred eEEEEEEeC--CCCeEEEECCCCh--HHHHHHHHHcCC-cccEEEecCCCCccccCHHHHHHHC----CCCEEEEechhc
Confidence 568999742 2357999999953 455555555564 8999999999999999999998753 357899875320
Q ss_pred HHHHHhccccccccCCCCCCcccceeeEEecCcceEeCC-EEE--EEEEcccCCCccEEEEEEC------cEEEeCCCCC
Q 018792 191 EVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQD-LKI--TPLPVWHGAGYRSLGFRFG------NICYISDVSE 261 (350)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~v--~~~~~~H~~g~~s~g~~i~------~i~ysGDt~~ 261 (350)
. ++ ....+.+++.+.+|+ .++ ...|+ |++|+ +.|.+. .++|+||+-.
T Consensus 83 ------~----------~~-----~~~~v~~gd~i~lg~~~~~~vi~tPG-HT~gh--i~~~~~~~~~~~~~lFtGDtLf 138 (258)
T PLN02469 83 ------V----------KG-----CTHPVENGDKLSLGKDVNILALHTPC-HTKGH--ISYYVTGKEGEDPAVFTGDTLF 138 (258)
T ss_pred ------C----------CC-----CCeEeCCCCEEEECCceEEEEEECCC-CCCCC--EEEEeccCCCCCCEEEecCccc
Confidence 0 00 011223457788874 444 44554 99865 666664 4999999854
No 39
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.36 E-value=6.4e-11 Score=110.58 Aligned_cols=127 Identities=20% Similarity=0.269 Sum_probs=96.5
Q ss_pred ccceEEEEecCCCCCceEEEecCcc-hHHHHHhhCCc-CCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEech
Q 018792 110 LNTSILIRYPGPSGRRNILIDAGKF-FYHSALRWFPA-YGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAM 187 (350)
Q Consensus 110 ~~ss~lI~~~~~~~~~~iLID~G~~-~~~~l~~~l~~-~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~ 187 (350)
..+||||. +++.+|||++.. +...++..+++ +++++||+|+++|.-+||.+.++.+++.. ++++|++++
T Consensus 35 tyNSYLI~-----~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~----p~a~ii~s~ 105 (388)
T COG0426 35 TYNSYLIV-----GDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELA----PNAKIICSK 105 (388)
T ss_pred eeeeEEEe-----CCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhC----CCCEEEeeH
Confidence 45799999 789999999874 55555555443 66789999999999999999999998753 579999999
Q ss_pred hhHHHHHHhccccccccCCCCCCcccceeeEEec-CcceEeCCEEEEEEEcc--cCCCccEEEEEEC-cEEEeCCCC
Q 018792 188 RDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVW--HGAGYRSLGFRFG-NICYISDVS 260 (350)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~v~~~~~~--H~~g~~s~g~~i~-~i~ysGDt~ 260 (350)
...+.++..+... . .+..++ ++.+.+||-++++++++ |.|+ .-+-|..+ +|+||+|..
T Consensus 106 ~~~~~L~~~~~~~-------------~-~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd-~m~TYd~~~kILFS~D~f 167 (388)
T COG0426 106 LAARFLKGFYHDP-------------E-WFKIVKTGDTLDLGGHTLKFIPAPFLHWPD-TMFTYDPEDKILFSCDAF 167 (388)
T ss_pred HHHHHHHHhcCCc-------------c-ceeecCCCCEeccCCcEEEEEeCCCCCCCC-ceeEeecCCcEEEccccc
Confidence 9999888764311 1 144444 57899998777766665 9985 33445555 999999974
No 40
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.35 E-value=2e-11 Score=109.75 Aligned_cols=122 Identities=17% Similarity=0.207 Sum_probs=80.5
Q ss_pred cceEEEEecCCCCCceEEEecCcchHHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhH
Q 018792 111 NTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF 190 (350)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~ 190 (350)
+.||+|...+..+++.+|||+|......+++.+++.+. +|.+|++||.|+||++|+..|.+.. +.+++|+++..
T Consensus 23 ~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~-~i~~Il~TH~H~DHigg~~~l~~~~----~~a~v~~~~~~- 96 (251)
T PLN02962 23 TYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGL-KLIYAMNTHVHADHVTGTGLLKTKL----PGVKSIISKAS- 96 (251)
T ss_pred eEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCC-eeEEEEcCCCCchhHHHHHHHHHHC----CCCeEEecccc-
Confidence 46888863100135789999996433455566666665 7899999999999999999987643 35788875421
Q ss_pred HHHHHhccccccccCCCCCCcccceeeEEecCcceEeCCEEEEEEEcc-cCCCccEEEEEEC--------cEEEeCCCCC
Q 018792 191 EVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG--------NICYISDVSE 261 (350)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~~~~~~-H~~g~~s~g~~i~--------~i~ysGDt~~ 261 (350)
. ...+...-+++.+.+++.+++.+.++ |++| +++|.++ +++|+||+-.
T Consensus 97 -----------~----------~~~d~~l~~g~~i~~g~~~l~vi~tPGHT~g--~v~~~~~d~~~~~~~~~lftGD~Lf 153 (251)
T PLN02962 97 -----------G----------SKADLFVEPGDKIYFGDLYLEVRATPGHTAG--CVTYVTGEGPDQPQPRMAFTGDALL 153 (251)
T ss_pred -----------C----------CCCCEEeCCCCEEEECCEEEEEEECCCCCcC--cEEEEeccCCCCCccceEEECCeec
Confidence 0 00111222457788898766655444 8885 5667654 4999999854
No 41
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.33 E-value=9.8e-12 Score=111.33 Aligned_cols=138 Identities=21% Similarity=0.295 Sum_probs=84.8
Q ss_pred cceEEEEecCCCCC-ceEEEecCcch--HHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEech
Q 018792 111 NTSILIRYPGPSGR-RNILIDAGKFF--YHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAM 187 (350)
Q Consensus 111 ~ss~lI~~~~~~~~-~~iLID~G~~~--~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~ 187 (350)
++++++.. ++ ..+|||+|... ...+.+.+...+. +|++|++||.|.||++|+..+.+... .++++..+
T Consensus 25 ~~~~~~~~----~~~~~~liD~G~~~~~~~~~~~~l~~~~~-~i~~vilTH~H~DH~gg~~~~~~~~~----~~~~~~~~ 95 (252)
T COG0491 25 NSVYLLVD----GEGGAVLIDTGLGDADAEALLEALAALGL-DVDAILLTHGHFDHIGGAAVLKEAFG----AAPVIAPA 95 (252)
T ss_pred ccEEEEEc----CCCceEEEeCCCCchHHHHHHHHHHHcCC-ChheeeecCCchhhhccHHHHHhhcC----CceEEccc
Confidence 44556652 34 89999999875 4556666656666 99999999999999999998876431 36675544
Q ss_pred hhHHHHHHhccccccccCCCCCCccc--ceeeEEecCcceEeCC--EEEEEEEcccCCCccEEEEEEC--cEEEeCCCCC
Q 018792 188 RDFEVMKKTHYYLVDTSGIIPGAAVS--ELQFNIIDEEPFTVQD--LKITPLPVWHGAGYRSLGFRFG--NICYISDVSE 261 (350)
Q Consensus 188 ~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~--~~v~~~~~~H~~g~~s~g~~i~--~i~ysGDt~~ 261 (350)
................. ......+ .......+++.+.+++ +++...|+ |++|+ ++|.++ +++|+||...
T Consensus 96 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tpG-HT~g~--~~~~~~~~~~l~~gD~~~ 170 (252)
T COG0491 96 EVPLLLREEILRKAGVT--AEAYAAPGASPLRALEDGDELDLGGLELEVLHTPG-HTPGH--IVFLLEDGGVLFTGDTLF 170 (252)
T ss_pred hhhhhhhcccccccccc--cccCCCCccccceecCCCCEEEecCeEEEEEECCC-CCCCe--EEEEECCccEEEecceec
Confidence 44443332221111000 0000011 1111222456778877 66666664 99965 777777 4999999866
Q ss_pred C
Q 018792 262 I 262 (350)
Q Consensus 262 ~ 262 (350)
.
T Consensus 171 ~ 171 (252)
T COG0491 171 A 171 (252)
T ss_pred c
Confidence 4
No 42
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=99.27 E-value=2.5e-11 Score=115.31 Aligned_cols=187 Identities=18% Similarity=0.246 Sum_probs=118.9
Q ss_pred CCceEEEEEeccCCCCcCccCccCCCCCCCCCCccccCCCCCCccccceEEEEecCCCCCceEEEecCcchH---HHHHh
Q 018792 65 AQQSEIVFMGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFY---HSALR 141 (350)
Q Consensus 65 ~~~~~i~~LGtG~~~g~P~~~~~~~~~~~c~~c~~~~~~~~~~~r~~ss~lI~~~~~~~~~~iLID~G~~~~---~~l~~ 141 (350)
...++++-||.|.-- +.+|.++++ .+++|++|||.-.. -..+.
T Consensus 11 ~d~l~~~pLGag~EV------------------------------GRSC~ile~----kGk~iMld~gvhpaysg~aslp 56 (668)
T KOG1137|consen 11 SDQLKFTPLGAGNEV------------------------------GRSCHILEY----KGKTIMLDCGVHPAYSGMASLP 56 (668)
T ss_pred CCcEEEEECCCCccc------------------------------CceEEEEEe----cCeEEEeccccCcccccccccc
Confidence 356889999987642 247999997 88999999996311 11223
Q ss_pred hCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEec---hhhHHHHHHhccccccccC---CC-CCCcccc
Q 018792 142 WFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVA---MRDFEVMKKTHYYLVDTSG---II-PGAAVSE 214 (350)
Q Consensus 142 ~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~---~~~~~~l~~~~~~~~~~~~---~~-~~~~~~~ 214 (350)
++...++..||.++|||+|.||++.++++.+.... .-++|.. +...+|+...+-....... .+ .++....
T Consensus 57 f~d~vd~s~id~llIthFhldh~aslp~~~qkTsf---~grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s 133 (668)
T KOG1137|consen 57 FYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSF---IGRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMES 133 (668)
T ss_pred chhhcccccccHHHHhhhhhhhcccccceeeeccc---cceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHh
Confidence 34456788999999999999999999998775432 2356654 4445555544322211110 00 0111111
Q ss_pred -eeeEEecC-cceEeCCEEEEEEEcccCCCccEEEEEEC----cEEEeCCCCCCCcchhcc----cCCCCEEEEcccCCC
Q 018792 215 -LQFNIIDE-EPFTVQDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPF----LQDCEILIMDALRPD 284 (350)
Q Consensus 215 -~~~~~i~~-~~~~~~~~~v~~~~~~H~~g~~s~g~~i~----~i~ysGDt~~~~~~~~~~----~~~~dlLi~e~~~~~ 284 (350)
.++..++- +..+++|++|.++-+.|..| +..|.++ +++|+||.....++-... -.+.|++|.|.++..
T Consensus 134 ~dKie~idfhe~~ev~gIkf~p~~aGhVlg--acMf~veiagv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv 211 (668)
T KOG1137|consen 134 MDKIETIDFHETVEVNGIKFWPYHAGHVLG--ACMFMVEIAGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGV 211 (668)
T ss_pred hhhheeeeeccccccCCeEEEeeccchhhh--heeeeeeeceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeE
Confidence 13333442 56778999999999989875 4556665 999999987643321111 125899999999865
Q ss_pred CCCCCC
Q 018792 285 RSSSTH 290 (350)
Q Consensus 285 ~~~~~H 290 (350)
..+..|
T Consensus 212 ~~h~~r 217 (668)
T KOG1137|consen 212 QIHEPR 217 (668)
T ss_pred EecCch
Confidence 433333
No 43
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.15 E-value=4.9e-10 Score=97.28 Aligned_cols=220 Identities=19% Similarity=0.212 Sum_probs=116.7
Q ss_pred ceEEEEecCCCCCceEEEecCcchH-------------HHHHhhCCcC--CCCCccEEEecCCcccccCChhH-HHHhhc
Q 018792 112 TSILIRYPGPSGRRNILIDAGKFFY-------------HSALRWFPAY--GIRTIDAVIITHSHADAIGGLDD-LRDWTN 175 (350)
Q Consensus 112 ss~lI~~~~~~~~~~iLID~G~~~~-------------~~l~~~l~~~--~~~~Id~V~iTH~H~DH~~Gl~~-l~~~~~ 175 (350)
-+.+|++ .+-.||||+|-... ..+.+....+ -.++.|.|.|||.|.||..-... +....
T Consensus 16 mAt~vet----~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s- 90 (304)
T COG2248 16 MATFVET----KDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEAS- 90 (304)
T ss_pred hhheeec----CCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhc-
Confidence 3678994 88999999995421 1111111111 12577889999999999974211 11110
Q ss_pred cCCccccEEe-------ch-hhHHHHHHhccccccccCCCCCCcccceeeEEecCcceEeCCEEEEEE-EcccCCCccEE
Q 018792 176 NVQRHIPIYV-------AM-RDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPL-PVWHGAGYRSL 246 (350)
Q Consensus 176 ~~~~~~~v~~-------~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~~~-~~~H~~g~~s~ 246 (350)
......||. ++ ....+-++...+.+-.. ......++..-++..|.+|+.+|++- |++|++...-+
T Consensus 91 -~e~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~~-----~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGskL 164 (304)
T COG2248 91 -GETAKEIYKGKLLLLKHPTENINRSQRRRAYRFLES-----LKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKL 164 (304)
T ss_pred -ccchHHHhcCcEEEecCchhhhCHHHHHHHHHHHHH-----hhhhcceeEecCCceEEeCCEEEEecCCCCCCCccccc
Confidence 000111222 22 22222111111111000 01112255566778999999999755 46698854667
Q ss_pred EEEEC--------cEEEeCCCC-CCCcchhccc--CCCCEEEEcccCC--CCCCCCCCCHHHHHHHHHHh---CCCeEEE
Q 018792 247 GFRFG--------NICYISDVS-EIPEETYPFL--QDCEILIMDALRP--DRSSSTHFGLPRALEEVRKI---QPKRTLF 310 (350)
Q Consensus 247 g~~i~--------~i~ysGDt~-~~~~~~~~~~--~~~dlLi~e~~~~--~~~~~~H~~~~~~~~~~~~~---~~~~~vl 310 (350)
||.+. +++|+.|+. +..++.++++ +++|++|++.-.. -....+-...+.+++-++++ ..+.+|+
T Consensus 165 GyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~lVi 244 (304)
T COG2248 165 GYVLMVAVTDGKSSIVFASDVQGPINDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATLVI 244 (304)
T ss_pred ceEEEEEEecCCeEEEEcccccCCCccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCcceEEE
Confidence 88773 999999996 5444455555 4699999875321 11111222334444433332 2367888
Q ss_pred EEeecCC-ChhhHHHHHHHhhhhCCCcEEEccc
Q 018792 311 IGMMHLM-DHEKVNEELLKLMETEGLDVQLSYD 342 (350)
Q Consensus 311 tH~~~~~-~~~~~~~~l~~~~~~~~~~v~ia~D 342 (350)
-|.--+. ++.+..+++-+..++.|++|..+-.
T Consensus 245 DHHllRD~~y~e~l~~l~~~~~~~GV~v~TaAE 277 (304)
T COG2248 245 DHHLLRDKNYREFLEELFERAEKAGVEVATAAE 277 (304)
T ss_pred eehhhcCCCHHHHHHHHHhhHhhcCceeeeHHH
Confidence 8843332 2334445556666677776665543
No 44
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=99.09 E-value=8.1e-10 Score=98.15 Aligned_cols=121 Identities=21% Similarity=0.228 Sum_probs=76.9
Q ss_pred ccceEEEEecCCCCCceEEEecCcch-HHHHHhhCCcC--CCCCccEEEecCCcccccCChhHHHHhhccCCccccEEec
Q 018792 110 LNTSILIRYPGPSGRRNILIDAGKFF-YHSALRWFPAY--GIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVA 186 (350)
Q Consensus 110 ~~ss~lI~~~~~~~~~~iLID~G~~~-~~~l~~~l~~~--~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~ 186 (350)
.+.+||+.. +..++++|.+... ...+...+... .-.++.+||.||.|+||+||+..+.+... +++.+|+.
T Consensus 12 ~Ny~YLl~~----~~~~~~a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~---~~~~v~g~ 84 (265)
T KOG0813|consen 12 DNYMYLLGD----GDKTIDADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIP---YDIKVIGG 84 (265)
T ss_pred CceEEEEec----ccceeeeeeecCcchHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhcc---CCcEEecC
Confidence 467899983 4666666666431 12222222221 23489999999999999999999977431 35777776
Q ss_pred hhhHHHHHHhccccccccCCCCCCcccceeeEEecCcceEeCCEEEEEEEcc-cCCCccEEEEEEC-----cEEEeCCCC
Q 018792 187 MRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG-----NICYISDVS 260 (350)
Q Consensus 187 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~~~~~~-H~~g~~s~g~~i~-----~i~ysGDt~ 260 (350)
.. ... + .+....-+++.+.++|.+|+.+..+ |+.|| +.|.+. ..+|+||+-
T Consensus 85 ~~------~r~----------~-----~i~~~~~~~e~~~~~g~~v~~l~TPgHT~~h--i~~~~~~~~~e~~iFtGDtl 141 (265)
T KOG0813|consen 85 AD------DRI----------P-----GITRGLKDGETVTVGGLEVRCLHTPGHTAGH--ICYYVTESTGERAIFTGDTL 141 (265)
T ss_pred Ch------hcC----------c-----cccccCCCCcEEEECCEEEEEEeCCCccCCc--EEEEeecCCCCCeEEeCCce
Confidence 41 010 0 1111122357899999999877766 88876 444443 799999984
No 45
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=98.98 E-value=1.1e-08 Score=89.71 Aligned_cols=195 Identities=22% Similarity=0.309 Sum_probs=119.3
Q ss_pred CCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhHHHHHHhccccccccCCCCCCcccceeeEEecCc---ce
Q 018792 149 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEE---PF 225 (350)
Q Consensus 149 ~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~ 225 (350)
..|+..+|||.|.||+.|+..--. ....+.+-+||+-+.+.+.+++...++.-+.... ......++++.+++. ..
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp-~~~~qkkkTI~gl~~tIDvL~khvFN~lvWP~lt-~~gs~~~~~qvv~P~~~~sl 188 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSP-DDSKQKKKTIYGLADTIDVLRKHVFNWLVWPNLT-DSGSGTYRMQVVRPAQSLSL 188 (356)
T ss_pred hhhhheEeccccccchhceeecCc-cccccCCceEEechhHHHHHHHHhhcccccCCcc-cccCceEEEEEeChhHeeee
Confidence 578999999999999999853211 1122345689999999999988744332221111 011124567777652 34
Q ss_pred EeCCEEEEEEEcccCC--CccE--EEEEEC------cEEEeCCCCCCCcc---h----hccc------CCCCEEEEcccC
Q 018792 226 TVQDLKITPLPVWHGA--GYRS--LGFRFG------NICYISDVSEIPEE---T----YPFL------QDCEILIMDALR 282 (350)
Q Consensus 226 ~~~~~~v~~~~~~H~~--g~~s--~g~~i~------~i~ysGDt~~~~~~---~----~~~~------~~~dlLi~e~~~ 282 (350)
.+-.+++.++|+.|+. |.++ ..|.+. -++|.||+.+..-+ + +..+ ....-+++||.+
T Consensus 189 t~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD~vese~ll~~~Wr~~ae~I~q~~LkgiliEcS~ 268 (356)
T COG5212 189 TLTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEPDDVESEKLLDTVWRKLAEKITQQQLKGILIECSY 268 (356)
T ss_pred eeeeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCCCcchhhhhHHHHHHHHHHHHhhhHHhhCceEEEecC
Confidence 4456789999999976 3333 456664 68899999874221 1 2111 124557899999
Q ss_pred CCCC----CCCCCCHHHHHHHHHHhC----------CCeEEEEEeecCCCh-----hhHHHHHHHhhhhC---CCcEEEc
Q 018792 283 PDRS----SSTHFGLPRALEEVRKIQ----------PKRTLFIGMMHLMDH-----EKVNEELLKLMETE---GLDVQLS 340 (350)
Q Consensus 283 ~~~~----~~~H~~~~~~~~~~~~~~----------~~~~vltH~~~~~~~-----~~~~~~l~~~~~~~---~~~v~ia 340 (350)
++.. -.+|+++.-.+..+..++ .=.+++||....... ..+.++++-++++. +..+.++
T Consensus 269 P~~~~~~~LfGH~~P~~L~nEL~~L~~l~~s~~~l~gL~vviTHiKs~p~q~~~pr~~ILeeL~fLae~~nl~~~~f~i~ 348 (356)
T COG5212 269 PNDVADNKLFGHMTPTWLLNELKKLEQLSGSGQPLKGLPVVITHIKSSPQQGQDPRKLILEELQFLAEQGNLMGIEFIIM 348 (356)
T ss_pred CCCCChhHhhcccChHHHHHHHHHHHHHhccCCCCCCccEEEEeccCcccccCCHHHHHHHHHHHHHhcCCccceEEEee
Confidence 8764 369999988877776653 235788997643211 12334444344343 2346666
Q ss_pred ccCeE
Q 018792 341 YDGLR 345 (350)
Q Consensus 341 ~DGm~ 345 (350)
..|..
T Consensus 349 ~~G~~ 353 (356)
T COG5212 349 EQGDS 353 (356)
T ss_pred ecccc
Confidence 66654
No 46
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=98.67 E-value=2.3e-07 Score=88.95 Aligned_cols=188 Identities=20% Similarity=0.270 Sum_probs=113.2
Q ss_pred CceEEEecCcchHHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhHHHHHHhccccccc
Q 018792 124 RRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDT 203 (350)
Q Consensus 124 ~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 203 (350)
-..+.+++|..+.-...+ .-......+-|+||+|.||..||.-- |. .-++|++.-++..+.......
T Consensus 89 ~~~~~~~p~~~f~VD~f~---~~~~~~~s~yFLsHFHSDHy~GL~~s--W~-----~p~lYCS~ita~Lv~~~~~v~--- 155 (481)
T KOG1361|consen 89 LHVIKVLPGGEFSVDAFR---YGHIEGCSAYFLSHFHSDHYIGLTKS--WS-----HPPLYCSPITARLVPLKVSVT--- 155 (481)
T ss_pred CcceeecCCCcEEEehhh---cCCccccceeeeeccccccccccccc--cc-----CCcccccccchhhhhhhcccC---
Confidence 346777776643222222 11234788999999999999988542 32 234999998888776543211
Q ss_pred cCCCCCCcccceeeEEec-CcceEeCCEEEEEEEcccCCCccEEEEEEC-----cEEEeCCCCCCCcchh---ccc-CCC
Q 018792 204 SGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGAGYRSLGFRFG-----NICYISDVSEIPEETY---PFL-QDC 273 (350)
Q Consensus 204 ~~~~~~~~~~~~~~~~i~-~~~~~~~~~~v~~~~~~H~~g~~s~g~~i~-----~i~ysGDt~~~~~~~~---~~~-~~~ 273 (350)
.-.++.++ ++.+.+.+++++.++++|++| ++.|.++ .++++||.....+... ... +.+
T Consensus 156 ----------~~~i~~l~l~~~~~i~~~~vt~ldAnHCPG--a~mf~F~~~~~~~~lhtGDFR~s~~m~~~p~~~~~~~i 223 (481)
T KOG1361|consen 156 ----------KQSIQALDLNQPLEIPGIQVTLLDANHCPG--AVMFLFELSFGPCILHTGDFRASADMSKEPALTLEQTI 223 (481)
T ss_pred ----------hhhceeecCCCceeecceEEEEeccccCCC--ceEEEeecCCCceEEecCCcccChhhhhChHHhcCCcc
Confidence 11223333 367888899999999999996 4555553 8999999988754322 222 569
Q ss_pred CEEEEcccCCCCC-C--CCCCCHHHHHHHHHHhCC--CeEEEEEeecCCChhhHHHHHHHhhhhCCCcEEE
Q 018792 274 EILIMDALRPDRS-S--STHFGLPRALEEVRKIQP--KRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQL 339 (350)
Q Consensus 274 dlLi~e~~~~~~~-~--~~H~~~~~~~~~~~~~~~--~~~vltH~~~~~~~~~~~~~l~~~~~~~~~~v~i 339 (350)
|.+.+|+|+-+.. . ..+-....+++++..... .++.+.+.......+++. .+.++..+.++.+
T Consensus 224 ~~lyLDtTycnp~y~Fpsq~esvq~v~~~i~~~~~~~~~~Li~v~~ysiGkE~l~---~eia~~l~~kI~v 291 (481)
T KOG1361|consen 224 DILYLDTTYCNPKYDFPSQEESVQEVVDVIRSHASKNDRVLIVVGTYSIGKEKLL---LEIARILNSKIWV 291 (481)
T ss_pred ceEEEeecccCCCCCCccHHHHHHHHHHHHHhhhhhCCceEEEEEEEecchhHHH---HHHHHHhCCceEE
Confidence 9999999986531 1 112333444444443322 345555555555554443 3444445545544
No 47
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=98.58 E-value=6e-07 Score=88.03 Aligned_cols=162 Identities=21% Similarity=0.249 Sum_probs=101.0
Q ss_pred cceEEEEecCCCCCceEEEecCcch--HHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechh
Q 018792 111 NTSILIRYPGPSGRRNILIDAGKFF--YHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMR 188 (350)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~~--~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~ 188 (350)
..|++++. ++-+||||||.+- ..++...++.. +..||+|++||...=|+|||++...... -+++||++-.
T Consensus 15 ~~cyllqi----D~~~iLiDcGwd~~f~~~~i~~l~~~-i~~iDaILLShpd~~hlGaLpY~~~k~g---l~~~VYAT~P 86 (764)
T KOG1135|consen 15 PLCYLLQI----DGVRILIDCGWDESFDMSMIKELKPV-IPTIDAILLSHPDILHLGALPYAVGKLG---LNAPVYATLP 86 (764)
T ss_pred cceEEEEE----cCeEEEEeCCCcchhccchhhhhhcc-cccccEEEecCCChHHhccchhhHhhCC---ccceEEEecc
Confidence 35899997 7899999999862 33343333333 4699999999999999999999876432 2489999877
Q ss_pred hHHHHH----Hhccccccc--cCCCCCCccc-ce-eeEEec-CcceEe----CCEEEEEEEcccCCCccEEEEEEC----
Q 018792 189 DFEVMK----KTHYYLVDT--SGIIPGAAVS-EL-QFNIID-EEPFTV----QDLKITPLPVWHGAGYRSLGFRFG---- 251 (350)
Q Consensus 189 ~~~~l~----~~~~~~~~~--~~~~~~~~~~-~~-~~~~i~-~~~~~~----~~~~v~~~~~~H~~g~~s~g~~i~---- 251 (350)
+...-+ ..+.-..+. ...+.-..+. .+ ++..+. .++..+ .|++|++.++.|..| .+ -|+|.
T Consensus 87 V~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiG-Gs-IWkI~k~~E 164 (764)
T KOG1135|consen 87 VIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIG-GS-IWKISKVGE 164 (764)
T ss_pred hhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccC-ce-EEEEEecCc
Confidence 765321 111000000 0000000000 00 122222 133333 378999999999997 34 47773
Q ss_pred cEEEeCCCCCCCcc-----hhcccCCCCEEEEcccC
Q 018792 252 NICYISDVSEIPEE-----TYPFLQDCEILIMDALR 282 (350)
Q Consensus 252 ~i~ysGDt~~~~~~-----~~~~~~~~dlLi~e~~~ 282 (350)
+|+|.-|..+.-+. .++.+.++.+||.++..
T Consensus 165 ~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda~~ 200 (764)
T KOG1135|consen 165 DIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDANH 200 (764)
T ss_pred eEEEEEecccchhcccCCccccccCCcceEEecccc
Confidence 99999998765443 34556678899988753
No 48
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.58 E-value=1e-06 Score=76.75 Aligned_cols=204 Identities=17% Similarity=0.177 Sum_probs=118.9
Q ss_pred ccceEEEEecCCCCCceEEEecCcchHHH-----HHhhC----CcCCCCCccEEEecCCcccccCChhHHHHhhccCCcc
Q 018792 110 LNTSILIRYPGPSGRRNILIDAGKFFYHS-----ALRWF----PAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRH 180 (350)
Q Consensus 110 ~~ss~lI~~~~~~~~~~iLID~G~~~~~~-----l~~~l----~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~ 180 (350)
+.+|.++.. ++-.+|-|+=...+.. -.++. ....+.++|-+++||.|.||.. +..+..+. ...+.
T Consensus 87 g~a~~~~~~----~g~~~~tdpvf~d~~if~s~gPkry~~pp~~~~~~p~~d~~~vsh~h~dhld-~~~~~~~~-~~~~~ 160 (343)
T KOG3798|consen 87 GHATVLVDL----EGVKFVTDPVWADRASFTSFGPKRYRPPPMKLEDLPDLDFAVVSHDHYDHLD-ADAVKKIT-DRNPQ 160 (343)
T ss_pred cceeEEEec----cCcEEecchhhccchhhcccCcccccCCchhhccCCCCceeccccccccccc-hHHHHhhh-ccCcc
Confidence 457778876 5677777764321110 01110 0134579999999999999985 44444433 22232
Q ss_pred ccEEechhhHHHHHHhccccccccCCCCCCcccceeeEEecCc--ceEeC--CEEEEEEEcccCCCcc------E--EEE
Q 018792 181 IPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEE--PFTVQ--DLKITPLPVWHGAGYR------S--LGF 248 (350)
Q Consensus 181 ~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~--~~~v~~~~~~H~~g~~------s--~g~ 248 (350)
+ -+++.....++.... . .-......++ .+.-+ -++|.+.|+.|..+.. . .+|
T Consensus 161 ~-wfvp~g~k~~m~~~g------------c---~~v~el~wwe~~~~vkn~~~~ti~~tPaqHw~~R~L~D~Nk~LW~sw 224 (343)
T KOG3798|consen 161 I-WFVPLGMKKWMEGDG------------S---STVTELNWGESSEFVKNGKTYTIWCLPAQHWGQRGLFDRNKRLWSSW 224 (343)
T ss_pred c-eeehhhhhheecCCC------------C---CceeEeeccchhceecCCcEEEEEEcchhhhcccccccCCcceeeee
Confidence 3 455655555443311 0 0011111121 22222 3678899999975411 1 123
Q ss_pred EE-C---cEEEeCCCCCCCcchhcc---cCCCCEEEEcccCCCC---CCCCCCCHHHHHHHHHHhCCCeEEEEEeecCCC
Q 018792 249 RF-G---NICYISDVSEIPEETYPF---LQDCEILIMDALRPDR---SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMD 318 (350)
Q Consensus 249 ~i-~---~i~ysGDt~~~~~~~~~~---~~~~dlLi~e~~~~~~---~~~~H~~~~~~~~~~~~~~~~~~vltH~~~~~~ 318 (350)
.+ + +++|.|||++|+..+.+. +-..|+..+.+..... ..+.|..+++|+++.+.+++++.+-+|++...-
T Consensus 225 ~v~g~~nrfffaGDTGyc~~~F~~IgerfGpfdLAaiPiGaYePrWfmK~~HInPeEav~Ihkdv~arns~gIHWGTf~l 304 (343)
T KOG3798|consen 225 AVIGENNRFFFAGDTGYCDGEFKKIGERFGPFDLAAIPIGAYEPRWFMKSQHINPEEAVEIHKDVRAKNSIGIHWGTFHL 304 (343)
T ss_pred EEecCCceEEecCCCCcccHHHHHHHHhcCCcceeeccccccCchhhcccccCCHHHHHHHHHHHhhhcceeEeeeeeec
Confidence 33 2 899999999998654333 2337887766654332 357799999999999999999999998765321
Q ss_pred ----hhhHHHHHHHhhhhCCC
Q 018792 319 ----HEKVNEELLKLMETEGL 335 (350)
Q Consensus 319 ----~~~~~~~l~~~~~~~~~ 335 (350)
+-+..+.+.++++..|.
T Consensus 305 ~~EyyLEP~~KL~el~e~~gl 325 (343)
T KOG3798|consen 305 GSEYYLEPRDKLKELMEAEGL 325 (343)
T ss_pred ccceecCcHHHHHHHHHhcCC
Confidence 11224556666666554
No 49
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=98.58 E-value=3e-07 Score=75.73 Aligned_cols=117 Identities=17% Similarity=0.241 Sum_probs=76.3
Q ss_pred cceEEEEecCCCCCceEEEecCcchHHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhH
Q 018792 111 NTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF 190 (350)
Q Consensus 111 ~ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~ 190 (350)
+.+|++-.. ..++.++||+-.....+-.+.++.+++ ++-+-+-||.|+||+.|-..|.... | ...
T Consensus 21 TytYll~d~--~~~~AviIDPV~et~~RD~qlikdLgl-~LiYa~NTH~HADHiTGtg~Lkt~~----p--------g~k 85 (237)
T KOG0814|consen 21 TYTYLLGDH--KTGKAVIIDPVLETVSRDAQLIKDLGL-DLIYALNTHVHADHITGTGLLKTLL----P--------GCK 85 (237)
T ss_pred eEEEEeeeC--CCCceEEecchhhcccchHHHHHhcCc-eeeeeecceeecccccccchHHHhc----c--------cHH
Confidence 356777642 467899999987643333333446776 6669999999999999987765432 1 111
Q ss_pred HHHHHhccccccccCCCCCCcccceeeEEecCcceEeCCEEEE--EEEcccCCCccEEEEEEC--cEEEeCCC
Q 018792 191 EVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKIT--PLPVWHGAGYRSLGFRFG--NICYISDV 259 (350)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~--~~~~~H~~g~~s~g~~i~--~i~ysGDt 259 (350)
..+.+.. | .+.+.+.-+++.+++|++.++ +.|+ |++ .|+-|... +..|+||+
T Consensus 86 SVis~~S-----------G---akAD~~l~~Gd~i~~G~~~le~ratPG-HT~--GC~TyV~~d~~~aFTGDa 141 (237)
T KOG0814|consen 86 SVISSAS-----------G---AKADLHLEDGDIIEIGGLKLEVRATPG-HTN--GCVTYVEHDLRMAFTGDA 141 (237)
T ss_pred HHhhhcc-----------c---cccccccCCCCEEEEccEEEEEecCCC-CCC--ceEEEEecCcceeeecce
Confidence 2222110 1 122344556788999987665 4454 888 57888887 99999997
No 50
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=98.40 E-value=6.9e-06 Score=68.52 Aligned_cols=167 Identities=17% Similarity=0.193 Sum_probs=85.9
Q ss_pred ceEEEEecCCCCCceEEEecCcchHHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhHH
Q 018792 112 TSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFE 191 (350)
Q Consensus 112 ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~ 191 (350)
+|+++.. ++++||||+-+-.... ..+|... ..|++|++||. ||+-....+.+.+ .++||+|....+
T Consensus 24 ng~~~~~----p~GnilIDP~~ls~~~-~~~l~a~--ggv~~IvLTn~--dHvR~A~~ya~~~-----~a~i~~p~~d~~ 89 (199)
T PF14597_consen 24 NGHAWRR----PEGNILIDPPPLSAHD-WKHLDAL--GGVAWIVLTNR--DHVRAAEDYAEQT-----GAKIYGPAADAA 89 (199)
T ss_dssp EEEEE------TT--EEES-----HHH-HHHHHHT--T--SEEE-SSG--GG-TTHHHHHHHS-------EEEEEGGGCC
T ss_pred eeEEEEc----CCCCEEecCccccHHH-HHHHHhc--CCceEEEEeCC--hhHhHHHHHHHHh-----CCeeeccHHHHh
Confidence 4555553 8899999998854332 3333334 47899999986 9999988888765 589999987653
Q ss_pred HHHHhccccccccCCCCCCcccceeeEEecCcceEeCCEEEEEEEcccCCCccEEEEEEC-cEEEeCCCCCCCcchhccc
Q 018792 192 VMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFG-NICYISDVSEIPEETYPFL 270 (350)
Q Consensus 192 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~v~~~~~~H~~g~~s~g~~i~-~i~ysGDt~~~~~~~~~~~ 270 (350)
.+ ++ ..+. .+.+....++|+++..++..|++| .+++.++ +++++||......
T Consensus 90 ~~----p~--------------~~D~-~l~dge~i~~g~~vi~l~G~ktpG--E~ALlled~vLi~GDl~~~~~------ 142 (199)
T PF14597_consen 90 QF----PL--------------ACDR-WLADGEEIVPGLWVIHLPGSKTPG--ELALLLEDRVLITGDLLRSHP------ 142 (199)
T ss_dssp C-----SS----------------SE-EE-TT-BSSTTEEEEEE-SSSSTT--EEEEEETTTEEEESSSEEBSS------
T ss_pred hC----CC--------------CCcc-ccccCCCccCceEEEEcCCCCCCc--eeEEEeccceEEecceeeecC------
Confidence 21 10 0111 223223456899999999999996 4778887 9999999754322
Q ss_pred CCCCEEEE-cccCCCCCCCCCCCHHHHHHHHHHh----CCCeEEEEEeecCCChhhHHHHHHHhh
Q 018792 271 QDCEILIM-DALRPDRSSSTHFGLPRALEEVRKI----QPKRTLFIGMMHLMDHEKVNEELLKLM 330 (350)
Q Consensus 271 ~~~dlLi~-e~~~~~~~~~~H~~~~~~~~~~~~~----~~~~~vltH~~~~~~~~~~~~~l~~~~ 330 (350)
.-++-+. |.- -+++.++.+-+.++ +.+.+.+-|......+. .+.+.+++
T Consensus 143 -~g~l~lLpd~k--------~~d~~~a~~sl~RLa~~~~fe~lLvGdGwpi~~~~--r~rl~~L~ 196 (199)
T PF14597_consen 143 -AGSLSLLPDEK--------LYDPTEARASLRRLAAYPDFEWLLVGDGWPIFRDA--RQRLRELV 196 (199)
T ss_dssp -TTS-EE--GGG---------S-HHHHHHHHHHHHT-TT--EEEESBB--B-S-H--HHHHHHHH
T ss_pred -CCCeEECChHH--------cCCHHHHHHHHHHHhccccccEEeecCCchhhhhH--HHHHHHHH
Confidence 1122222 222 23456655555544 45666666766554432 34455443
No 51
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.03 E-value=3.3e-05 Score=73.36 Aligned_cols=77 Identities=22% Similarity=0.214 Sum_probs=52.9
Q ss_pred ceEEEEecCCCCCceEEEecCcc--h-HHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechh
Q 018792 112 TSILIRYPGPSGRRNILIDAGKF--F-YHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMR 188 (350)
Q Consensus 112 ss~lI~~~~~~~~~~iLID~G~~--~-~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~ 188 (350)
+-.+|+ .+..+|+||+=.. . ...+.-+.+..+-+.|.+|+.||.|.||+||...+.....-...+++|++|..
T Consensus 127 NITfve----Gdtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~G 202 (655)
T COG2015 127 NITFVE----GDTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAG 202 (655)
T ss_pred ceEEEc----CCcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccCceeEecchh
Confidence 345667 4678999998543 2 22222222345567899999999999999999888654332234689999988
Q ss_pred hHHH
Q 018792 189 DFEV 192 (350)
Q Consensus 189 ~~~~ 192 (350)
.++.
T Consensus 203 Fme~ 206 (655)
T COG2015 203 FMEE 206 (655)
T ss_pred HHHH
Confidence 7654
No 52
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=97.57 E-value=0.00023 Score=49.39 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=42.5
Q ss_pred ceEEEEecCCCCCceEEE-ecCcchHHHHHhhCCcCCCCCccEEEecCCc-ccccCC
Q 018792 112 TSILIRYPGPSGRRNILI-DAGKFFYHSALRWFPAYGIRTIDAVIITHSH-ADAIGG 166 (350)
Q Consensus 112 ss~lI~~~~~~~~~~iLI-D~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H-~DH~~G 166 (350)
.|+++.. +++++|| +||+++.+.+.+. ++.+.+++.||+|+.. +|++||
T Consensus 13 p~l~l~~----d~~rYlFGn~gEGtQR~~~e~--~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 13 PSLLLFF----DSRRYLFGNCGEGTQRACNEH--KIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CEEEEEe----CCceEEeccCCcHHHHHHHHc--CCCccccceEEECCCCcccccCC
Confidence 6899996 7799999 9999987766663 6778999999999999 999987
No 53
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.92 E-value=0.015 Score=52.52 Aligned_cols=45 Identities=22% Similarity=0.399 Sum_probs=34.5
Q ss_pred CCCceEEEecCcchHHHHHhhCCcCCCCCccEEEecCCcccccCChhHHH
Q 018792 122 SGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLR 171 (350)
Q Consensus 122 ~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~ 171 (350)
+++..+++|.|.+. +.. ....+++|+.|++||.|.+|.+++..+.
T Consensus 102 d~~~v~v~~~gls~---lak--~~vt~d~i~~vv~t~~~~~hlgn~~~f~ 146 (302)
T KOG4736|consen 102 DGGDVVVVDTGLSV---LAK--EGVTLDQIDSVVITHKSPGHLGNNNLFP 146 (302)
T ss_pred cCCceEEEecCCch---hhh--cCcChhhcceeEEeccCccccccccccc
Confidence 47888999999882 211 1344689999999999999999886653
No 54
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=89.76 E-value=0.22 Score=50.16 Aligned_cols=52 Identities=29% Similarity=0.514 Sum_probs=39.4
Q ss_pred ceEEEEecCCCCCceEEEecCcc---hHHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHH
Q 018792 112 TSILIRYPGPSGRRNILIDAGKF---FYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRD 172 (350)
Q Consensus 112 ss~lI~~~~~~~~~~iLID~G~~---~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~ 172 (350)
.+.|... ++-+||+|.|.. .+-.+.++ +.+||+|++||.-.|...|+..|++
T Consensus 49 daALFav----nGf~iLv~GgserKS~fwklVrH-----ldrVdaVLLthpg~dNLpginsllq 103 (934)
T KOG3592|consen 49 DAALFAV----NGFNILVNGGSERKSCFWKLVRH-----LDRVDAVLLTHPGADNLPGINSLLQ 103 (934)
T ss_pred cceeEee----cceEEeecCCcccccchHHHHHH-----HhhhhhhhhcccccCccccchHHHH
Confidence 3555554 688999999876 22344444 4689999999999999999988764
No 55
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=88.62 E-value=0.46 Score=30.21 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCCCCCHHHHHHHHHHhCCCeEEEEEee
Q 018792 287 SSTHFGLPRALEEVRKIQPKRTLFIGMM 314 (350)
Q Consensus 287 ~~~H~~~~~~~~~~~~~~~~~~vltH~~ 314 (350)
-.+|.+.++..++++.++|++++++|..
T Consensus 14 fSgHad~~~L~~~i~~~~p~~vilVHGe 41 (43)
T PF07521_consen 14 FSGHADREELLEFIEQLNPRKVILVHGE 41 (43)
T ss_dssp CSSS-BHHHHHHHHHHHCSSEEEEESSE
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEecCC
Confidence 3789999999999999999999999975
No 56
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=83.65 E-value=24 Score=35.23 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=51.7
Q ss_pred ceEEEEecCCCCCceEEEecCcchHHH---HH-hhCCcCCC-----CCccEEEecCCcccccCChhHHHHhhccC--Ccc
Q 018792 112 TSILIRYPGPSGRRNILIDAGKFFYHS---AL-RWFPAYGI-----RTIDAVIITHSHADAIGGLDDLRDWTNNV--QRH 180 (350)
Q Consensus 112 ss~lI~~~~~~~~~~iLID~G~~~~~~---l~-~~l~~~~~-----~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~--~~~ 180 (350)
+-++|+. .+..|+|+|.-.+.. +. ..+...++ +..-++.++|.|.||.+-+..+....-.+ +--
T Consensus 165 cMf~vei-----agv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~vIh~~v~rGGR~L 239 (668)
T KOG1137|consen 165 CMFMVEI-----AGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTWVIHSTVPRGGRVL 239 (668)
T ss_pred eeeeeee-----ceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCCCceE
Confidence 3567775 578999999865322 11 11122221 56678899999999999998887653221 223
Q ss_pred ccEEechhhHHHHHHh
Q 018792 181 IPIYVAMRDFEVMKKT 196 (350)
Q Consensus 181 ~~v~~~~~~~~~l~~~ 196 (350)
+|+++.....+.+.-.
T Consensus 240 ~PvFAlgrAqELllil 255 (668)
T KOG1137|consen 240 IPVFALGRAQELLLIL 255 (668)
T ss_pred eeeeecchHHHHHHHH
Confidence 7899988777766544
No 57
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=80.82 E-value=3.1 Score=40.52 Aligned_cols=58 Identities=21% Similarity=0.142 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHhCCCeEEEEEeecCCChhhHHHHHHHhhhhCCC---cEEEcccCeEEEee
Q 018792 287 SSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGL---DVQLSYDGLRVPVM 349 (350)
Q Consensus 287 ~~~H~~~~~~~~~~~~~~~~~~vltH~~~~~~~~~~~~~l~~~~~~~~~---~v~ia~DGm~i~l~ 349 (350)
..+|.+.++..++++.++|+.++++|...+. .....+++++.|. ++.+...|..+.++
T Consensus 358 ~SgHa~~~dl~~~i~~~~Pk~~ipvHge~~~-----~~~~~~~a~~~g~~~~~~~~~~nG~~~~~~ 418 (422)
T TIGR00649 358 VSGHASQEDHKLLLRLLKPKYIIPVHGEYRM-----LINHTKLAEEEGYPGENIFILRNGDVLEIN 418 (422)
T ss_pred ecCCCCHHHHHHHHHHhCCCEEEecCCcHHH-----HHHHHHHHHHcCCCcccEEEecCCcEEEec
Confidence 4789999999999999999999999966432 2233445566665 68999999998874
No 58
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=66.50 E-value=15 Score=37.93 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHhCC--CeEEEEEeecCCChhhHHHHHHHh-hhhCCCcEEEcccCeEEEe
Q 018792 287 SSTHFGLPRALEEVRKIQP--KRTLFIGMMHLMDHEKVNEELLKL-METEGLDVQLSYDGLRVPV 348 (350)
Q Consensus 287 ~~~H~~~~~~~~~~~~~~~--~~~vltH~~~~~~~~~~~~~l~~~-~~~~~~~v~ia~DGm~i~l 348 (350)
-.+|.+..+.+++++++++ ++++++|..... .+.+.+. .++++.++.++..|.++.|
T Consensus 570 fSaHaD~~~L~~~v~~~~p~p~~v~lvHGe~~~-----~~~la~~l~~~~~~~~~~P~~~e~~~~ 629 (630)
T TIGR03675 570 FSGHSDRRQLMNYVRRMQPKPEKILLNHGEPSK-----ILDLASSIYKKFNIETYAPKNLETIRL 629 (630)
T ss_pred ccccCCHHHHHHHHHhcCCCCCEEEEEcCCHHH-----HHHHHHHHHHHhCCcEEeCCCCCEEEe
Confidence 3789999999999999965 899999977431 2223333 3456778999999999876
No 59
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=64.68 E-value=17 Score=35.82 Aligned_cols=147 Identities=20% Similarity=0.262 Sum_probs=78.7
Q ss_pred CceEEEecCcchHHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhccCCccccEEechhhHHHHH----H----
Q 018792 124 RRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMK----K---- 195 (350)
Q Consensus 124 ~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~~~~~~~~v~~~~~~~~~l~----~---- 195 (350)
...+.+|-.+.+.-..... .+...||.|+||..|. ..||+++.+.. +-..+||+++.+.+.-+ +
T Consensus 73 ~~rvfvesppe~~l~~t~l---ld~stiDvILISNy~~--mlgLPfiTent---GF~gkiY~TE~t~qiGrllMEelv~f 144 (653)
T KOG1138|consen 73 CGRVFVESPPEFTLPATHL---LDASTIDVILISNYMG--MLGLPFITENT---GFFGKIYATEPTAQIGRLLMEELVSF 144 (653)
T ss_pred CCceEEcCCchhccchhhh---hcccceeEEEEcchhh--hcccceeecCC---CceeEEEEechHHHHHHHHHHHHHHH
Confidence 3567788777643222222 3457999999999873 56777776532 12468999987765311 1
Q ss_pred --hcc------ccccc--cCCCCCC---cccceeeEE---ecC--------------cceEe-CCEEEEEEEcccCCCcc
Q 018792 196 --THY------YLVDT--SGIIPGA---AVSELQFNI---IDE--------------EPFTV-QDLKITPLPVWHGAGYR 244 (350)
Q Consensus 196 --~~~------~~~~~--~~~~~~~---~~~~~~~~~---i~~--------------~~~~~-~~~~v~~~~~~H~~g~~ 244 (350)
..+ .|... ....|.. .+....|.. +++ +.+.+ |-+.++++-..|+.|
T Consensus 145 ier~p~~~S~~~Wk~k~~~~~lpsplk~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lG-- 222 (653)
T KOG1138|consen 145 IERFPKASSAPLWKKKLDSELLPSPLKKAVFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLG-- 222 (653)
T ss_pred HHhccccccchhhhhhhhhhhcCCCchhhccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEecccccccc--
Confidence 111 11111 0000000 000011111 111 33333 456777777777774
Q ss_pred EEEEEEC----cEEEeCCCCCCCcc----hhcccCCCCEEEEcc
Q 018792 245 SLGFRFG----NICYISDVSEIPEE----TYPFLQDCEILIMDA 280 (350)
Q Consensus 245 s~g~~i~----~i~ysGDt~~~~~~----~~~~~~~~dlLi~e~ 280 (350)
+.-|.|. ++.|..+..+.... -..-++++|+||+-.
T Consensus 223 SsnW~I~t~nek~sYvS~Ss~ltth~r~md~a~Lk~~Dvli~T~ 266 (653)
T KOG1138|consen 223 SSNWLINTPNEKLSYVSGSSFLTTHPRPMDQAGLKETDVLIYTG 266 (653)
T ss_pred ccceEEecCCcceEEEecCcccccCCccccccccccccEEEEec
Confidence 4457774 88888887643221 134568899998754
No 60
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=55.17 E-value=10 Score=38.94 Aligned_cols=72 Identities=11% Similarity=0.100 Sum_probs=52.2
Q ss_pred CCceEEEecCcchHHHHHhhCCcCCCCCccEEEecCCcccccCChhHHHHhhc--cCCccccEEechhhHHHHHHh
Q 018792 123 GRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTN--NVQRHIPIYVAMRDFEVMKKT 196 (350)
Q Consensus 123 ~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~DH~~Gl~~l~~~~~--~~~~~~~v~~~~~~~~~l~~~ 196 (350)
+.+..++-||++...-+.+. +..+.+++.||+|=.+++-+||++.+.-... ....+..+++|+.....+...
T Consensus 72 ~~~~~~~n~Geg~qr~~~eh--k~~~sk~~~iflt~~~w~~~GglpGl~ltl~~~G~~g~~~l~gP~~l~~~l~~m 145 (746)
T KOG2121|consen 72 DRKRFIFNCGEGTQRLLTEH--KIKLSKLDSIFLTRVCWSSCGGLPGLLLTLADIGEPGPVVLHGPSDLNYILSAM 145 (746)
T ss_pred chhhhhhhhhHHHHHHHHHh--hhhhhhhhheEeecccHHHhCCCccceeehhhcCCCCcccccCchhHHHHHHHH
Confidence 67889999999986533332 4556899999999999999999998743211 112257788888777666554
No 61
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=39.71 E-value=71 Score=32.36 Aligned_cols=93 Identities=15% Similarity=0.045 Sum_probs=57.0
Q ss_pred cEEEeCCCCCCCcc----hhcccCCCCEEEEcccCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEEeecCCChhhHHHHHH
Q 018792 252 NICYISDVSEIPEE----TYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELL 327 (350)
Q Consensus 252 ~i~ysGDt~~~~~~----~~~~~~~~dlLi~e~~~~~~~~~~H~~~~~~~~~~~~~~~~~~vltH~~~~~~~~~~~~~l~ 327 (350)
.++|+....+--+. +.+.+....+-+...........+|.+.++...+++.++|+.+++.|...++.. ...
T Consensus 329 ~vIfss~~ipgne~~~~~~~n~l~~~g~~i~~~~~~~~hvSGHas~eel~~mi~~l~Pky~iPvHGeyr~~~-----~~a 403 (555)
T COG0595 329 TVIFSSSPIPGNEAAVYRLLNRLYKAGAKVITGGDKKVHVSGHASREELKLMINLLRPKYLIPVHGEYRMLV-----AHA 403 (555)
T ss_pred eEEEeccCcCCcHHHHHHHHHHHHhcCcEEeecccceeEecCCCChHHHHHHHHhhCCceecccCCCcHHHH-----HHH
Confidence 77777776554222 122221122222222222224589999999999999999999999997654321 112
Q ss_pred HhhhhCC---CcEEEcccCeEEEee
Q 018792 328 KLMETEG---LDVQLSYDGLRVPVM 349 (350)
Q Consensus 328 ~~~~~~~---~~v~ia~DGm~i~l~ 349 (350)
+++++.| .++.+...|..+.++
T Consensus 404 ~la~~~G~~~~~i~i~~nG~v~~l~ 428 (555)
T COG0595 404 KLAEEEGIPQENIFILRNGDVLELE 428 (555)
T ss_pred HHHHhcCCCcccEEEecCceEEEec
Confidence 3333333 368899999988875
No 62
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=32.10 E-value=1.7e+02 Score=23.81 Aligned_cols=48 Identities=17% Similarity=0.285 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCeEEEEEeecCCCh---hh----HHHHHHHhhhhCCCcEEEc
Q 018792 293 LPRALEEVRKIQPKRTLFIGMMHLMDH---EK----VNEELLKLMETEGLDVQLS 340 (350)
Q Consensus 293 ~~~~~~~~~~~~~~~~vltH~~~~~~~---~~----~~~~l~~~~~~~~~~v~ia 340 (350)
++++...+++++++++++.-+.|+... +. +.+.+.+.++..|.+|.-|
T Consensus 60 v~eI~~~a~kv~~~~ivlyPyAHLSs~La~P~~A~~iL~~le~~L~~~g~eV~ra 114 (138)
T PF08915_consen 60 VEEIKWVAKKVKAKRIVLYPYAHLSSSLASPDVAVEILKKLEERLKSRGFEVYRA 114 (138)
T ss_dssp HHHHHHHHHHTT-SEEEEEE-GGGSSSB--HHHHHHHHHHHHHHHHHTT-EEEE-
T ss_pred HHHHHHHHHhcCCCEEEEeCcccccCCcCChHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 457778889999999998867776542 22 2233445555666665544
No 63
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=31.06 E-value=61 Score=30.06 Aligned_cols=62 Identities=16% Similarity=0.319 Sum_probs=48.0
Q ss_pred ECcEEEeC--CCCCCCcchhcccCCCCEEEEcccCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEE
Q 018792 250 FGNICYIS--DVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIG 312 (350)
Q Consensus 250 i~~i~ysG--Dt~~~~~~~~~~~~~~dlLi~e~~~~~~~~~~H~~~~~~~~~~~~~~~~~~vltH 312 (350)
+.++.|.| |..+.| +.++.+.++|++|+.=..+-.+...++.+.+..+.+++.+++++++.-
T Consensus 160 i~~V~~~~~e~a~~~p-~vl~AI~~AD~IVlGPgsp~TSI~P~LlVpgI~eAL~~s~A~vV~Vsp 223 (303)
T cd07186 160 VRDVRFVGAEEARPAP-EVLEAIEDADLVIIGPSNPVTSIGPILALPGIREALRDKKAPVVAVSP 223 (303)
T ss_pred eEEEEeCCcccCCCCH-HHHHHHHhCCEEEECCCccHHHhhhhccchhHHHHHHhCCCCEEEEcC
Confidence 34778877 556665 478888899999987665555667788899999999999988887654
No 64
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=30.62 E-value=2.2e+02 Score=25.07 Aligned_cols=68 Identities=24% Similarity=0.319 Sum_probs=36.4
Q ss_pred CcchhcccCCCCEEEEcccCCCCCCCCCCCHH-HHHHHHHHhCCCeEEEEEeecCCChhhHHHHHHHhhhhCCCcEEEcc
Q 018792 263 PEETYPFLQDCEILIMDALRPDRSSSTHFGLP-RALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSY 341 (350)
Q Consensus 263 ~~~~~~~~~~~dlLi~e~~~~~~~~~~H~~~~-~~~~~~~~~~~~~~vltH~~~~~~~~~~~~~l~~~~~~~~~~v~ia~ 341 (350)
|++.++.+.++|++|.=.. |-.+. ++.+.+++.+.+.++..-.... ..+.+.+.+.++++|.++.++.
T Consensus 42 pee~Lp~i~~~Dl~I~y~l--------HPDl~~~l~~~~~e~g~kavIvp~~~~~---~g~~~~lk~~~e~~gi~~~~P~ 110 (217)
T PF02593_consen 42 PEEYLPKIPEADLLIAYGL--------HPDLTYELPEIAKEAGVKAVIVPSESPK---PGLRRQLKKQLEEFGIEVEFPK 110 (217)
T ss_pred hHHHccCCCCCCEEEEecc--------CchhHHHHHHHHHHcCCCEEEEecCCCc---cchHHHHHHHHHhcCceeecCc
Confidence 4445555778888877222 32232 4555555566666554332222 2234556666666666555543
No 65
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=27.75 E-value=2e+02 Score=27.21 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHhCCCeEEEEEeecCCChhhHHHHH-HHhhhhCCCcEEEcccCeEEEe
Q 018792 288 STHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEEL-LKLMETEGLDVQLSYDGLRVPV 348 (350)
Q Consensus 288 ~~H~~~~~~~~~~~~~~~~~~vltH~~~~~~~~~~~~~l-~~~~~~~~~~v~ia~DGm~i~l 348 (350)
..|.......++.+...|+.+++.|.... +. +.+ .+.-++++++..++-.|..+.+
T Consensus 389 SaHaDAkGIm~li~~csPknVmlVHGE~~----kM-~~Lk~ki~~e~~ip~~mPaNGetv~i 445 (501)
T KOG1136|consen 389 SAHADAKGIMQLIKQCSPKNVMLVHGEKS----KM-KFLKEKIESEFDIPTFMPANGETVVI 445 (501)
T ss_pred ccccCchhHHHHHHhcCcceEEEEeccch----hh-HHHHHhhHhhcCCceeeCCCCCEEEe
Confidence 67888999999999999999999996532 11 222 2334567888888888988765
No 66
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=26.20 E-value=3e+02 Score=24.40 Aligned_cols=59 Identities=17% Similarity=0.318 Sum_probs=36.8
Q ss_pred cEEEeCCCCCCC---------------cchhcccCCCCEEEE--cccCCCC----CC-CCCCCHHHHHHHHHHhCCCeEE
Q 018792 252 NICYISDVSEIP---------------EETYPFLQDCEILIM--DALRPDR----SS-STHFGLPRALEEVRKIQPKRTL 309 (350)
Q Consensus 252 ~i~ysGDt~~~~---------------~~~~~~~~~~dlLi~--e~~~~~~----~~-~~H~~~~~~~~~~~~~~~~~~v 309 (350)
+++++||..... +.+.++++++|+.+. |+...+. +. .......+.++.++.++.+.+-
T Consensus 1 ti~~~GDi~~~~~~~~~~~~~~~~~~~~~v~~~l~~aD~~~~NlE~~v~~~~~~~~~~~~f~~~~~~~~~L~~~G~d~vs 80 (250)
T PF09587_consen 1 TIAFVGDIMLGRGVYQRAEKGGFDYIFEDVKPLLQSADLVVANLETPVTDSGQPASGYPHFNAPPEILDALKDAGFDVVS 80 (250)
T ss_pred CEEEEeccccCcchhhhcccCChHHHHHHHHHHHhhCCEEEEEeeecCcCCCCcCCCcceecCCHHHHHHHHHcCCCEEE
Confidence 477888875321 124456678999885 4444322 11 2334567889999999988665
Q ss_pred E
Q 018792 310 F 310 (350)
Q Consensus 310 l 310 (350)
+
T Consensus 81 l 81 (250)
T PF09587_consen 81 L 81 (250)
T ss_pred e
Confidence 5
No 67
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=24.50 E-value=75 Score=24.37 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHhCCCeEEEE
Q 018792 288 STHFGLPRALEEVRKIQPKRTLFI 311 (350)
Q Consensus 288 ~~H~~~~~~~~~~~~~~~~~~vlt 311 (350)
.-|++..|+.++++.+++++++.+
T Consensus 82 SeHSSf~EL~~Fv~~l~P~~IiPt 105 (110)
T PF07522_consen 82 SEHSSFSELKEFVSFLKPKKIIPT 105 (110)
T ss_pred ccCCCHHHHHHHHHhcCCcEEEcc
Confidence 679999999999999999999876
No 68
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=23.67 E-value=1.2e+02 Score=28.24 Aligned_cols=64 Identities=14% Similarity=0.264 Sum_probs=43.3
Q ss_pred ECcEEEeC-CCCCCCcchhcccCCCCEEEEcccCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEEee
Q 018792 250 FGNICYIS-DVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMM 314 (350)
Q Consensus 250 i~~i~ysG-Dt~~~~~~~~~~~~~~dlLi~e~~~~~~~~~~H~~~~~~~~~~~~~~~~~~vltH~~ 314 (350)
|.++.|.+ +.... ++..+.+.++|+++..-...-.+.-.++-+.+..+.+++.+++++++.-.+
T Consensus 150 I~~v~l~~~~~~a~-~~al~AI~~ADlIvlgPGSlyTSIiPnLlv~gI~eAI~~s~a~kV~v~N~~ 214 (310)
T TIGR01826 150 IDRVRLEPEDVPAL-REAVEAIREADLIILGPGSLYTSIIPNLLVPEIAEALRESKAPKVYVCNLM 214 (310)
T ss_pred ceEEEEeCCCCCCC-HHHHHHHHhCCEEEECCCcCHHHhchhcCchhHHHHHHhCCCCEEEEeCCC
Confidence 56888888 55555 457888889999988655443344556666777777777777766655443
No 69
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=21.44 E-value=3.2e+02 Score=20.72 Aligned_cols=53 Identities=15% Similarity=0.297 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHhCCCeEEEEEeecCCChhhHHHHHHHhhhhCCCcEEEcccCeEEEe
Q 018792 291 FGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 348 (350)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~vltH~~~~~~~~~~~~~l~~~~~~~~~~v~ia~DGm~i~l 348 (350)
+...++++.++.-++|.+++-- +-+.+..+.+.-.++-.+.+|.+ |.|-.++|
T Consensus 22 lG~k~tiK~lk~gkaKliiiAs----N~P~~~k~~ieyYAkLs~ipV~~-y~Gt~~eL 74 (100)
T COG1911 22 LGSKRTIKSLKLGKAKLIIIAS----NCPKELKEDIEYYAKLSDIPVYV-YEGTSVEL 74 (100)
T ss_pred EehHHHHHHHHcCCCcEEEEec----CCCHHHHHHHHHHHHHcCCcEEE-ecCCceeH
Confidence 4566778888877887776632 22334455666566656777665 56655543
No 70
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=21.32 E-value=4.3e+02 Score=24.53 Aligned_cols=42 Identities=14% Similarity=0.363 Sum_probs=20.1
Q ss_pred HHHHHHHhCCCeEEEEEeecCCChhhHHHHHHHhhhhCCCcEEEc
Q 018792 296 ALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLS 340 (350)
Q Consensus 296 ~~~~~~~~~~~~~vltH~~~~~~~~~~~~~l~~~~~~~~~~v~ia 340 (350)
..+.++..+.+++.+.-- ..+....+++.+.+++.+.++.++
T Consensus 88 ~~~~~~~~~~~~v~l~~t---iq~~~~~~~v~~~L~~~g~~v~i~ 129 (308)
T TIGR03682 88 IEKALEELKGRRIGLVTT---AQHVHLLEKVKEILEERGIEVVIG 129 (308)
T ss_pred HHHHHHHCCCCeEEEEEc---HHhHHHHHHHHHHHHHcCceEEec
Confidence 333445555455555421 112222345556666666666665
No 71
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=21.31 E-value=1.3e+02 Score=28.03 Aligned_cols=66 Identities=9% Similarity=0.144 Sum_probs=46.6
Q ss_pred EECcEEEeCC-CCCCCcchhcccCCCCEEEEcccCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEEeec
Q 018792 249 RFGNICYISD-VSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMH 315 (350)
Q Consensus 249 ~i~~i~ysGD-t~~~~~~~~~~~~~~dlLi~e~~~~~~~~~~H~~~~~~~~~~~~~~~~~~vltH~~~ 315 (350)
.|.++.|.+. ....+ +.++.++++|+++..-...-.+.-.++-+....+.+++.+++++++.-.+.
T Consensus 152 ~I~~v~l~~~~~~~~~-~a~~AI~~AD~Iv~gPGSlyTSI~P~Llv~gI~eAi~~s~a~kV~v~N~~~ 218 (308)
T cd07187 152 PIKRVFLEPPDPKANP-EALEAIEEADLIVYGPGSLYTSILPNLLVKGIAEAIRASKAPKVYICNLMT 218 (308)
T ss_pred CceEEEEECCCCCCCH-HHHHHHHhCCEEEECCCccHHHhhhhcCchhHHHHHHhCCCCEEEEecCCC
Confidence 3457888774 44443 578888999999886654444556677788888888888888887765443
No 72
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=20.51 E-value=2e+02 Score=27.19 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHhCCCeEEEEEeecCC----C-------------hhhHHHHHHHhhhhCCCcEEEccc
Q 018792 288 STHFGLPRALEEVRKIQPKRTLFIGMMHLM----D-------------HEKVNEELLKLMETEGLDVQLSYD 342 (350)
Q Consensus 288 ~~H~~~~~~~~~~~~~~~~~~vltH~~~~~----~-------------~~~~~~~l~~~~~~~~~~v~ia~D 342 (350)
+.+..+++-+++++++++|.+|+|--.|.. + .-.+..++.+.+++.|.++.+.+-
T Consensus 88 p~~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t~~~v~~~~~krDiv~El~~A~rk~Glk~G~Y~S 159 (346)
T PF01120_consen 88 PTKFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYTDYNVVNSGPKRDIVGELADACRKYGLKFGLYYS 159 (346)
T ss_dssp -TT--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT-SSBGGGGGGTS-HHHHHHHHHHHTT-EEEEEEE
T ss_pred cccCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCCcccccCCCCCCCHHHHHHHHHHHcCCeEEEEec
Confidence 568899999999999999999998221211 0 113457778888888888877553
No 73
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=20.09 E-value=72 Score=27.26 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=25.9
Q ss_pred ceEEEEecCCCCCceEEEecCcchHHHHHhhCCcCCCCCccEEEecCCccc
Q 018792 112 TSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHAD 162 (350)
Q Consensus 112 ss~lI~~~~~~~~~~iLID~G~~~~~~l~~~l~~~~~~~Id~V~iTH~H~D 162 (350)
.|++|+. |||+|..+... .+.|++.|..+| +++.||.-+-
T Consensus 85 ~~IIvDD---------iIdtg~Tl~~a-A~~Lk~~GA~~V-~~~aTHgvfs 124 (184)
T PF14572_consen 85 ICIIVDD---------IIDTGGTLIKA-AELLKERGAKKV-YACATHGVFS 124 (184)
T ss_dssp EEEEEEE---------EESSTHHHHHH-HHHHHHTTESEE-EEEEEEE---
T ss_pred eEeeecc---------cccchHHHHHH-HHHHHHcCCCEE-EEEEeCcccC
Confidence 5777773 78888875433 234556777777 8999998774
Done!