Query 018793
Match_columns 350
No_of_seqs 193 out of 676
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 04:04:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018793.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018793hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 7.9E-84 1.7E-88 597.9 18.6 213 29-242 1-219 (219)
2 smart00205 THN Thaumatin famil 100.0 1.1E-81 2.4E-86 583.3 18.5 212 30-243 1-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 4.5E-81 9.7E-86 582.3 17.6 209 30-243 1-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 1.3E-77 2.8E-82 553.8 6.9 208 34-243 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 1E-59 2.2E-64 417.9 14.7 154 30-242 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 9.2E-52 2E-56 364.9 14.0 149 30-243 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 5.7E-51 1.2E-55 360.6 14.6 151 30-241 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 96.9 0.0051 1.1E-07 55.6 8.7 46 113-160 72-121 (155)
9 cd09216 GH64-LPHase-like glyco 95.6 0.052 1.1E-06 54.8 8.6 111 29-148 2-143 (353)
10 cd09220 GH64-GluB-like glycosi 91.3 0.53 1.1E-05 48.0 6.7 80 62-148 62-146 (369)
11 cd09214 GH64-like glycosyl hyd 49.4 13 0.00028 37.4 2.5 32 116-148 124-155 (319)
12 cd09214 GH64-like glycosyl hyd 48.5 7.6 0.00016 39.0 0.8 22 205-226 276-299 (319)
13 cd09220 GH64-GluB-like glycosi 45.8 9.1 0.0002 39.3 0.9 23 204-226 320-344 (369)
14 PF07172 GRP: Glycine rich pro 39.1 16 0.00034 30.6 1.1 14 17-30 15-28 (95)
15 cd09216 GH64-LPHase-like glyco 39.0 13 0.00029 37.8 0.9 22 205-226 310-333 (353)
16 cd05468 pVHL von Hippel-Landau 36.8 46 0.00099 29.4 3.8 48 27-80 8-55 (141)
17 PHA03094 dUTPase; Provisional 31.7 37 0.00081 30.0 2.4 29 57-85 35-69 (144)
18 PF01847 VHL: von Hippel-Linda 30.3 43 0.00092 30.7 2.5 48 26-79 13-60 (156)
19 PF11142 DUF2917: Protein of u 27.1 52 0.0011 25.3 2.2 23 58-80 2-29 (63)
20 PF05991 NYN_YacP: YacP-like N 26.2 22 0.00048 32.0 -0.0 9 134-142 2-10 (166)
21 PF06282 DUF1036: Protein of u 23.9 93 0.002 26.6 3.4 41 27-68 3-44 (115)
22 TIGR03096 nitroso_cyanin nitro 23.3 1.4E+02 0.003 26.7 4.5 22 58-79 94-115 (135)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=7.9e-84 Score=597.91 Aligned_cols=213 Identities=68% Similarity=1.325 Sum_probs=203.9
Q ss_pred EEEEEeCCCCcccceeecCCCCCCCCCCCcccCCCCeEEEEeCCCCceeeecccCccCCCCCCccccCCCCCCCccccCC
Q 018793 29 TFTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSFVAPTGWSGRFWGRTRCNFDGSGSGSCLTGDCGSGQVECNG 108 (350)
Q Consensus 29 tfTI~N~C~~TVWPgi~~~~G~p~l~~~Gf~L~pG~S~si~vP~~WsGRiWaRTGCsfd~~G~~~C~TGDCgsG~l~C~g 108 (350)
+|||+|||+||||||+++++|+|+|..+||+|+||++++|+||++|+|||||||+|+||+.|+++|+||||+ |+|+|++
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~WsGriWaRTgC~~~~~g~~~C~TGDCg-g~l~C~g 79 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSGWSGRFWGRTGCSFDSSGKGSCATGDCG-GGLECNG 79 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCCcceeeeeccCCCCCCCCccccccCCCC-CeeecCC
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred CCCCCCcceEEEEec-cCCCceeeeccccccCCCcEEEecCCCCCCCCcccccccccCCCccccCCCC----Ccccchhh
Q 018793 109 LGAAPPATLAEFTLG-SGGQDFYDVSLVDGYNLPMIVESSGGSGLCSTTGCSTDVNRQCPAELRVGEG----DACKSACE 183 (350)
Q Consensus 109 ~G~~pPaTLAEFTL~-~~g~DfYDVSLVDGyNlPm~I~P~gg~~~C~~~gC~~dln~~CP~eL~v~~~----~~C~SaC~ 183 (350)
.+++||+|||||||. .+++|||||||||||||||.|.|+++.+.|+.++|.+|||..||.||||++. ++|||||.
T Consensus 80 ~~g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~din~~CP~~L~v~~~~g~vv~C~SaC~ 159 (219)
T cd09218 80 AGGAPPATLAEFTLGGSGGQDFYDVSLVDGYNLPVSITPQGGSGGCRTAGCVADLNAVCPAELQVKNSGGRVVACKSACL 159 (219)
T ss_pred CCCCCCceeEEEEeccCCCCcceeeeeeccccCCEEEEecCCCCCCCCCcccCcccccCCHHHeeccCCCcEeeecCHHH
Confidence 888999999999994 4678999999999999999999987667899999999999999999999743 59999999
Q ss_pred hcCCccccccCCCCCCCCCCCCcchhHhhhcCCCCccccCCCCCCceeecC-CceEEEec
Q 018793 184 AFGSAEYCCSGAFNTPATCKPSVYSQVFKSACPKSYSYAYDDATSTFTCTG-ADYTVTFC 242 (350)
Q Consensus 184 afg~~~yCCtG~~~~p~tC~ps~YS~~FK~aCP~AYSYayDD~tStfTC~~-~~Y~ItFC 242 (350)
+|++|||||+|+|++|++|+|+.|+++||++||+||+|||||++++|+|++ ++|+|+||
T Consensus 160 ~f~~~~~CC~g~~~~p~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 160 AFNTDEYCCRGAYGTPETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred hhCCccceecCCCCCCCcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999999985 89999999
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=1.1e-81 Score=583.26 Aligned_cols=212 Identities=60% Similarity=1.218 Sum_probs=202.7
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCCcccCCCCeEEEEeCCCCc-eeeecccCccCCCCCCccccCCCCCCCccccCC
Q 018793 30 FTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSFVAPTGWS-GRFWGRTRCNFDGSGSGSCLTGDCGSGQVECNG 108 (350)
Q Consensus 30 fTI~N~C~~TVWPgi~~~~G~p~l~~~Gf~L~pG~S~si~vP~~Ws-GRiWaRTGCsfd~~G~~~C~TGDCgsG~l~C~g 108 (350)
|||+|||+|||||||+++ |++.|..+||+|++|++++|.+|++|. |||||||||+||++|+++|+||||+ |+|+|++
T Consensus 1 fti~N~C~~tVWp~~~~~-g~~~l~~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d~~G~~~C~TGdCg-G~l~C~g 78 (218)
T smart00205 1 FEFVNNCPYTVWAAALPS-GKPQLSGGGFELNSGASWQLDAPPGTKMGRIWARTGCNFDASGRGRCATGDCG-GVLQCNG 78 (218)
T ss_pred CEEEcCCCCceeceecCC-CCcccCCCcEecCCCCeEEEECCCCCccceEecccCCCcCCCCccccccCCCC-CeeecCC
Confidence 799999999999999999 999998899999999999999999996 9999999999999999999999999 8999999
Q ss_pred CCCCCCcceEEEEe-ccCCCceeeeccccccCCCcEEEecCCCCCCCCcccccccccCCCccccCCCC---Ccccchhhh
Q 018793 109 LGAAPPATLAEFTL-GSGGQDFYDVSLVDGYNLPMIVESSGGSGLCSTTGCSTDVNRQCPAELRVGEG---DACKSACEA 184 (350)
Q Consensus 109 ~G~~pPaTLAEFTL-~~~g~DfYDVSLVDGyNlPm~I~P~gg~~~C~~~gC~~dln~~CP~eL~v~~~---~~C~SaC~a 184 (350)
.+++||+|||||+| ..+++|||||||||||||||.|.|+++.+.|+.++|.+|||..||.|||+++. ++|||||.+
T Consensus 79 ~gg~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C~~~~C~~d~~~~CP~~L~v~~~g~vv~C~SaC~~ 158 (218)
T smart00205 79 WGGRPPATLAEFALNQFGGLDFYDVSLVDGFNIPMSFTPTGGSGDCKGAGCTADLNAQCPAELQVPGGGSVVACNSACTV 158 (218)
T ss_pred CCCCCCcceeEEEecCCCCcceeeeEeeccccCCEEEEecCCCCCcCCCcCCCcccccCCHHHccccCCcccccccHhhc
Confidence 88899999999999 45678999999999999999999987667899999999999999999999742 599999999
Q ss_pred cCCccccccCCCCCCCCCCCCcchhHhhhcCCCCccccCCCCCCceeecC-CceEEEecC
Q 018793 185 FGSAEYCCSGAFNTPATCKPSVYSQVFKSACPKSYSYAYDDATSTFTCTG-ADYTVTFCP 243 (350)
Q Consensus 185 fg~~~yCCtG~~~~p~tC~ps~YS~~FK~aCP~AYSYayDD~tStfTC~~-~~Y~ItFCP 243 (350)
|++|||||+|+|++|++|+|+.|+++||++||+||+|||||++++|+|++ ++|+|+|||
T Consensus 159 f~~~~yCC~g~~~~~~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 159 FGTDQYCCTGGQNNPETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred cCCCcceecCCCCCCCCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999999987 899999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=4.5e-81 Score=582.27 Aligned_cols=209 Identities=44% Similarity=0.907 Sum_probs=194.2
Q ss_pred EEEEeCCCCcccceeecCCCCC---CCCCCCcccCCCCeEEEEeCCCCc-eeeecccCccCC-CCCCccccCCCCCCCcc
Q 018793 30 FTFVNKCDYTIWPGILANAGSP---RLDSTGFELPQDSSRSFVAPTGWS-GRFWGRTRCNFD-GSGSGSCLTGDCGSGQV 104 (350)
Q Consensus 30 fTI~N~C~~TVWPgi~~~~G~p---~l~~~Gf~L~pG~S~si~vP~~Ws-GRiWaRTGCsfd-~~G~~~C~TGDCgsG~l 104 (350)
|||+|||+|||||||++++|++ ++..+||+|+||++++|++|++|+ |||||||||+|| ..|+++|+||||| |+|
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCg-g~l 79 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCG-GGL 79 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCC-cee
Confidence 7999999999999999999998 777899999999999999999997 999999999999 4699999999999 899
Q ss_pred ccCCCCCCCCcceEEEEeccCCCceeeeccccccCCCcEEEecCCCCCCCCcccccccccCCCccccCCC---C--Cccc
Q 018793 105 ECNGLGAAPPATLAEFTLGSGGQDFYDVSLVDGYNLPMIVESSGGSGLCSTTGCSTDVNRQCPAELRVGE---G--DACK 179 (350)
Q Consensus 105 ~C~g~G~~pPaTLAEFTL~~~g~DfYDVSLVDGyNlPm~I~P~gg~~~C~~~gC~~dln~~CP~eL~v~~---~--~~C~ 179 (350)
+|++ +++||+|||||+|...++|||||||||||||||+|.|.. .|+.++|.+|||..||.||||+. + +|||
T Consensus 80 ~C~~-~g~pP~TlaEftL~~~~~D~YdVSlVDGfNlP~~i~P~~---~C~~~~C~~dln~~CP~~L~v~~~~~g~~vaC~ 155 (229)
T cd09219 80 TCEN-SDQPPASLAEFTLIGGKEDNYDISLVDGFNIPLNITNNI---TCPQPQCQVDLNVLCPALLRGPLDQKGVNLGCI 155 (229)
T ss_pred ecCC-CCCCCcceeeEEecCCCCceeEEEEecccccceEeccCC---CCCCCcccCCCcccCCHHHccccCCCCccceec
Confidence 9995 568999999999953478999999999999999999932 69999999999999999999962 2 5999
Q ss_pred chhhh-cCC--ccccccCCCCCCCCCCC--CcchhHhhhcCCCCccccCCCCC--CceeecC---CceEEEecC
Q 018793 180 SACEA-FGS--AEYCCSGAFNTPATCKP--SVYSQVFKSACPKSYSYAYDDAT--STFTCTG---ADYTVTFCP 243 (350)
Q Consensus 180 SaC~a-fg~--~~yCCtG~~~~p~tC~p--s~YS~~FK~aCP~AYSYayDD~t--StfTC~~---~~Y~ItFCP 243 (350)
|||.+ |++ |||||+|+|++|++|+| +.|+++||++||+||||||||++ ++|||++ ++|+|+|||
T Consensus 156 SaC~a~~~~~~~~yCC~g~~~~p~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 156 SPCNRDKNHDDSPSCCTGSHNKPETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred CHhhhhccCCCCcccccCCCCCcCCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 99999 655 99999999999999999 78999999999999999999999 6799986 899999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=1.3e-77 Score=553.76 Aligned_cols=208 Identities=63% Similarity=1.274 Sum_probs=173.5
Q ss_pred eCCCCcccceeecCCCCCCCCCCCcccCCCCeEEEEeCCCCceeeecccCccCCCCCCccccCCCCCCCccccCCCCCCC
Q 018793 34 NKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSFVAPTGWSGRFWGRTRCNFDGSGSGSCLTGDCGSGQVECNGLGAAP 113 (350)
Q Consensus 34 N~C~~TVWPgi~~~~G~p~l~~~Gf~L~pG~S~si~vP~~WsGRiWaRTGCsfd~~G~~~C~TGDCgsG~l~C~g~G~~p 113 (350)
|||+||||||+++++|++++..+||+|++|++++|.+|++|+|||||||||++|+.|+++|+||||+ |+|+|++.++.|
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~WsGriW~RTgC~~~~~g~~~C~TGdCg-g~~~C~~~~~~~ 79 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAGWSGRIWARTGCSFDGGGRGSCATGDCG-GRLECNGAGGSP 79 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TTESEEEEEEEEEEEETTSBEEEEES-ST-TBSSSSS----S
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCccccceeeecCCCcCCCCCCcccccCCCC-cccccccccCcc
Confidence 9999999999999999988888999999999999999999999999999999999999999999999 999999888899
Q ss_pred CcceEEEEe-ccCCCceeeeccccccCCCcEEEecCCCCCCCCcccccccccCCCccccCCC---CCcccchhhhcCCcc
Q 018793 114 PATLAEFTL-GSGGQDFYDVSLVDGYNLPMIVESSGGSGLCSTTGCSTDVNRQCPAELRVGE---GDACKSACEAFGSAE 189 (350)
Q Consensus 114 PaTLAEFTL-~~~g~DfYDVSLVDGyNlPm~I~P~gg~~~C~~~gC~~dln~~CP~eL~v~~---~~~C~SaC~afg~~~ 189 (350)
|+|||||+| +.+++|||||||||||||||.|+|.+ ...|+..+|.+|||..||.|||++. .++|+|+|.+|+++|
T Consensus 80 P~TlaEftl~~~~~~d~YDVSlVdGfNlP~~i~p~~-~~~C~~~~C~~di~~~CP~~l~v~~~~~vv~C~SaC~~~~~~~ 158 (213)
T PF00314_consen 80 PATLAEFTLNGSNGQDFYDVSLVDGFNLPMSISPSG-GSNCRSPGCPADINSWCPSELQVKNSDGVVGCKSACDAFNTDE 158 (213)
T ss_dssp S--EEEEEEEETTTEEEEEEESTT-BSS-EEEEESS-SSSSSSEEE-S-HHHHE-CCCEEETTSSTTEE--HHHHH-SHH
T ss_pred cceeEEEEeccCCCcceEEEEeeeeecCChhhccCC-CCccccccCccccccccchhheeeccCceeeecccceeccCCc
Confidence 999999999 57789999999999999999999995 5789999999999999999999953 359999999999999
Q ss_pred ccccCCCCCCCCCCCCcchhHhhhcCCCCccccCCCCCCceeecC-CceEEEecC
Q 018793 190 YCCSGAFNTPATCKPSVYSQVFKSACPKSYSYAYDDATSTFTCTG-ADYTVTFCP 243 (350)
Q Consensus 190 yCCtG~~~~p~tC~ps~YS~~FK~aCP~AYSYayDD~tStfTC~~-~~Y~ItFCP 243 (350)
|||+|+|..|++|+++.|+++||++||+||+|||||++|+|+|++ ++|+|||||
T Consensus 159 ~CC~g~~~~~~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 159 YCCRGAYNTPDTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp HHTTCCS-TTSCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred cccccccCCCcccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 999999999999999999999999999999999999999999985 899999998
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=1e-59 Score=417.89 Aligned_cols=154 Identities=57% Similarity=1.186 Sum_probs=141.3
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCCcccCCCCeEEEEeCCCCceeeecccCccCCC-CCCccccCCCCCCCccccCC
Q 018793 30 FTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSFVAPTGWSGRFWGRTRCNFDG-SGSGSCLTGDCGSGQVECNG 108 (350)
Q Consensus 30 fTI~N~C~~TVWPgi~~~~G~p~l~~~Gf~L~pG~S~si~vP~~WsGRiWaRTGCsfd~-~G~~~C~TGDCgsG~l~C~g 108 (350)
|||+|||+|||||||++++|++ +..+||+|+||++++|.+|++|+|||||||+|+||+ .|+++|+||||+ |+|+|++
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~-~~~gGf~L~~g~s~~~~~p~~wsGriWgRTgC~~~~~~g~~~C~TGdCg-g~l~C~g 78 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKG-PYTGGFELNPGETKSFDVSAGWQGRIWARTNCSFNANSGGNACLTGDCN-GGLNCQG 78 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCC-CCCCCEecCCCCeeEEecCCCCeEeeecccccccCCCCCCCCcccCCCC-ceeecCC
Confidence 7999999999999999999997 788999999999999999999999999999999998 799999999999 8999998
Q ss_pred CCCCCCcceEEEEe-ccCCCceeeeccccccCCCcEEEecCCCCCCCCcccccccccCCCccccCCCCCcccchhhhcCC
Q 018793 109 LGAAPPATLAEFTL-GSGGQDFYDVSLVDGYNLPMIVESSGGSGLCSTTGCSTDVNRQCPAELRVGEGDACKSACEAFGS 187 (350)
Q Consensus 109 ~G~~pPaTLAEFTL-~~~g~DfYDVSLVDGyNlPm~I~P~gg~~~C~~~gC~~dln~~CP~eL~v~~~~~C~SaC~afg~ 187 (350)
++.||+|||||+| ..+++|||||||||||||||+|.|.+ +.|+..+|.+
T Consensus 79 -~g~pp~TlaEftl~~~~~~d~YdVSlVdG~NlP~~i~P~~--~~C~~~~C~~--------------------------- 128 (157)
T cd09215 79 -TGGPPATLAEFTLSGGGGLDYYDISLVDGYNLPMSITPQP--GECPTPICAA--------------------------- 128 (157)
T ss_pred -CCCCCcceEEEEecCCCCcceeEEEeeccccCCEEEecCC--CCCCCCcccc---------------------------
Confidence 5679999999999 45678999999999999999999975 3465544442
Q ss_pred ccccccCCCCCCCCCCCCcchhHhhhcCCCCccccCCCCCCceeecC-CceEEEec
Q 018793 188 AEYCCSGAFNTPATCKPSVYSQVFKSACPKSYSYAYDDATSTFTCTG-ADYTVTFC 242 (350)
Q Consensus 188 ~~yCCtG~~~~p~tC~ps~YS~~FK~aCP~AYSYayDD~tStfTC~~-~~Y~ItFC 242 (350)
||+||+|||||++++|+|++ ++|+|+||
T Consensus 129 ---------------------------Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 129 ---------------------------CPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred ---------------------------CccccccCCCCCccceECCCCCCEEEEeC
Confidence 99999999999999999986 99999999
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=9.2e-52 Score=364.90 Aligned_cols=149 Identities=52% Similarity=1.110 Sum_probs=132.6
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCCcccCCCCeEEEEeCCC-CceeeecccCccCCCCCCccccCCCCCCCccccCC
Q 018793 30 FTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSFVAPTG-WSGRFWGRTRCNFDGSGSGSCLTGDCGSGQVECNG 108 (350)
Q Consensus 30 fTI~N~C~~TVWPgi~~~~G~p~l~~~Gf~L~pG~S~si~vP~~-WsGRiWaRTGCsfd~~G~~~C~TGDCgsG~l~C~g 108 (350)
|||+|||+||||||+++. .+||+|+||++++|.+|++ |+|||||||+|+||++|+++|+||||| |+|+|++
T Consensus 1 ~~~~N~C~~tvWp~~~~~-------~gG~~L~~g~~~~~~~p~~~w~griW~RTgC~~~~~g~~~C~TGdCg-g~l~C~~ 72 (151)
T cd09217 1 FTITNNCGYTVWPAATPV-------GGGRQLNPGQSWTIDVPAGTAGGRIWGRTGCSFDASGRGSCQTGDCG-GVLSCTG 72 (151)
T ss_pred CEEEeCCCCcccceEecC-------CCCEeCCCCCeEEEEcCCCCceEEEeeecCCCcCCCCCCcccccCCC-CeeecCC
Confidence 799999999999999862 4799999999999999997 999999999999999999999999999 8999995
Q ss_pred CCCCCCcceEEEEeccCCCceeeeccccccCCCcEEEecCCCCCCCCcccccccccCCCccccCCCCCcccchhhhcCCc
Q 018793 109 LGAAPPATLAEFTLGSGGQDFYDVSLVDGYNLPMIVESSGGSGLCSTTGCSTDVNRQCPAELRVGEGDACKSACEAFGSA 188 (350)
Q Consensus 109 ~G~~pPaTLAEFTL~~~g~DfYDVSLVDGyNlPm~I~P~gg~~~C~~~gC~~dln~~CP~eL~v~~~~~C~SaC~afg~~ 188 (350)
+++||+||+||+|..+++|||||||||||||||.|.|.+ ..|+.++|..|
T Consensus 73 -~g~pp~Tl~E~tl~~~~~d~YdISlVdG~NlP~~i~P~~--~~C~~~~C~~d--------------------------- 122 (151)
T cd09217 73 -SGKPPATLAEYTLNQSGQDFYDISLVDGFNVPMDFSPTG--GGCHAIPCAAN--------------------------- 122 (151)
T ss_pred -CCCCCceeEEEEecCCCCccEEEEeecccccceEEecCC--CCCCCCcCCCC---------------------------
Confidence 568999999999954578999999999999999999974 33654444431
Q ss_pred cccccCCCCCCCCCCCCcchhHhhhcCCCCccccCCCCCCceeecC-CceEEEecC
Q 018793 189 EYCCSGAFNTPATCKPSVYSQVFKSACPKSYSYAYDDATSTFTCTG-ADYTVTFCP 243 (350)
Q Consensus 189 ~yCCtG~~~~p~tC~ps~YS~~FK~aCP~AYSYayDD~tStfTC~~-~~Y~ItFCP 243 (350)
||+||+|++|| .++++|+. ++|+|+|||
T Consensus 123 --------------------------C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 123 --------------------------CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred --------------------------CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 99999999994 79999985 899999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=5.7e-51 Score=360.58 Aligned_cols=151 Identities=45% Similarity=0.765 Sum_probs=135.1
Q ss_pred EEEEeCCCCcccceeecCCCCCCCCCCCcccCCCCeEEEEeCCCCceeeecccCccCCCCCCccccCCCCCCCccccCCC
Q 018793 30 FTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSFVAPTGWSGRFWGRTRCNFDGSGSGSCLTGDCGSGQVECNGL 109 (350)
Q Consensus 30 fTI~N~C~~TVWPgi~~~~G~p~l~~~Gf~L~pG~S~si~vP~~WsGRiWaRTGCsfd~~G~~~C~TGDCgsG~l~C~g~ 109 (350)
|||+|||+|||||+|+++++++.+..+||+|+||++++|++|.+|+||||+||+|++|..+++.|+||||+ + +.|.+.
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~wsGRIW~RtgC~~~~~g~g~C~TGdcg-g-~~c~g~ 78 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKGFSGRIWFRTGCSMDFSGTTGCLTQDPG-V-VNPTDP 78 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCCceEEEEEecCCcccCCCCccccccCCC-C-cccCCC
Confidence 79999999999999999998888888999999999999999999999999999999999899999999998 5 688877
Q ss_pred CCCCCcceEEEEec-cCCCceeeeccccccCCCcEEEecCCCCCCCCcccccccccCCCccccCCCCCcccchhhhcCCc
Q 018793 110 GAAPPATLAEFTLG-SGGQDFYDVSLVDGYNLPMIVESSGGSGLCSTTGCSTDVNRQCPAELRVGEGDACKSACEAFGSA 188 (350)
Q Consensus 110 G~~pPaTLAEFTL~-~~g~DfYDVSLVDGyNlPm~I~P~gg~~~C~~~gC~~dln~~CP~eL~v~~~~~C~SaC~afg~~ 188 (350)
++.||+|||||||. .+++|||||||||||||||.|+|.++.+.
T Consensus 79 ~g~pp~TlaEfTl~~~~~~dfydISlVDGfNlP~~i~p~~~~g~------------------------------------ 122 (153)
T cd08961 79 NRDPPFTLAEFTLNDFNSGDFIDSSLVDGFNAPMTVGPRRGDGT------------------------------------ 122 (153)
T ss_pred CCCCCcceEEEEecCCCCcceEEEEeecccCCCEEEEeccCCCC------------------------------------
Confidence 78999999999994 45789999999999999999999753222
Q ss_pred cccccCCCCCCCCCCCCcchhHhhhcCCCCccccCCCCCCceeecC-CceEEEe
Q 018793 189 EYCCSGAFNTPATCKPSVYSQVFKSACPKSYSYAYDDATSTFTCTG-ADYTVTF 241 (350)
Q Consensus 189 ~yCCtG~~~~p~tC~ps~YS~~FK~aCP~AYSYayDD~tStfTC~~-~~Y~ItF 241 (350)
|++.. |||+|||||+.++|+|++ .+|.|+|
T Consensus 123 -------------C~~~~----------~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 123 -------------CLSTG----------DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred -------------ccccc----------cccccCCCCccceEEcCCCCceEEeC
Confidence 22211 999999999999999986 8999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=96.91 E-value=0.0051 Score=55.58 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=34.2
Q ss_pred CCcceEEEEec-cCCCceeeeccccccC---CCcEEEecCCCCCCCCccccc
Q 018793 113 PPATLAEFTLG-SGGQDFYDVSLVDGYN---LPMIVESSGGSGLCSTTGCST 160 (350)
Q Consensus 113 pPaTLAEFTL~-~~g~DfYDVSLVDGyN---lPm~I~P~gg~~~C~~~gC~~ 160 (350)
.|.|..||+|. .+.+-|||+|.|+|+. =+|.|.|.+ ..|.+.-|..
T Consensus 72 ~pqt~FaYtL~~d~~~VwYDLSdvfGdPF~G~~v~v~ps~--~~Cp~I~Wp~ 121 (155)
T PF04681_consen 72 SPQTIFAYTLVDDNNQVWYDLSDVFGDPFAGHKVTVNPSD--PSCPSIVWPN 121 (155)
T ss_pred CceeEEEEEecCCCceEEEECccccCCCcCCCEEEEecCC--CCCCceECCC
Confidence 48999999994 4567999999999964 356777765 4576655543
No 9
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=95.62 E-value=0.052 Score=54.84 Aligned_cols=111 Identities=19% Similarity=0.321 Sum_probs=64.5
Q ss_pred EEEEEeCCCC--cccceeecCC---CC------------CCCC----C--C--Cccc-CCCCeEEEEeCCCCceeeeccc
Q 018793 29 TFTFVNKCDY--TIWPGILANA---GS------------PRLD----S--T--GFEL-PQDSSRSFVAPTGWSGRFWGRT 82 (350)
Q Consensus 29 tfTI~N~C~~--TVWPgi~~~~---G~------------p~l~----~--~--Gf~L-~pG~S~si~vP~~WsGRiWaRT 82 (350)
.|+|+||=+. +||..|++.. |. |... . . .+.| ++|++.++.+|. ++||||=-.
T Consensus 2 pl~l~Nns~~~~~vy~yi~G~~~~~~~~v~~~adG~~~~p~~~~~~~~~~~d~aipl~~~G~~~tvtiP~-~sgRiyfS~ 80 (353)
T cd09216 2 PLTITNNSGRNNQIYLYVVGTDLQTGRQGWVDADGAAHPVPPGDNVPDGAADYAIPLPSPGDTTTVLPPR-MSGRIYFSL 80 (353)
T ss_pred cEEEEeCCCCCCcEEEEEEeeeCCCCcEEEEeCCCCEecCCcccCCCCCccceeeECCCCCCceEEcccc-cCcEEEEEc
Confidence 4789999877 8888886532 21 0000 0 0 1233 467888999998 999999432
Q ss_pred CccCCCCCCccccCCCCCCCccccCCCCCCCC-----cceEEEEeccCCCceeeeccccccCCCcEEEecC
Q 018793 83 RCNFDGSGSGSCLTGDCGSGQVECNGLGAAPP-----ATLAEFTLGSGGQDFYDVSLVDGYNLPMIVESSG 148 (350)
Q Consensus 83 GCsfd~~G~~~C~TGDCgsG~l~C~g~G~~pP-----aTLAEFTL~~~g~DfYDVSLVDGyNlPm~I~P~g 148 (350)
+=. =.|. ... +.+.++=...-.+-| -..+|||+...+ -|-++|.||-|.+||.|+-.+
T Consensus 81 g~~----L~F~-~~~--~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~~g-l~~N~T~VD~~~~P~~l~l~~ 143 (353)
T cd09216 81 GSK----LRFK-VVT--NPALVQPAGWNPSDPNFNILHDWVEFTFNDAG-LFCNTTQVDMFSAPLAIGLRG 143 (353)
T ss_pred CCe----eEEE-ecC--CCcccCCCCCCCCCCCccceEEEEEEEecCCc-eEecccceeeeccceEEEEec
Confidence 210 0111 111 112111111111111 156999996333 589999999999999998775
No 10
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=91.26 E-value=0.53 Score=48.02 Aligned_cols=80 Identities=26% Similarity=0.292 Sum_probs=48.6
Q ss_pred CCCeEEEEeCCCCceeeecccCccCCCCCCccccCCCCCCCccccCCCCC-CCC----cceEEEEeccCCCceeeecccc
Q 018793 62 QDSSRSFVAPTGWSGRFWGRTRCNFDGSGSGSCLTGDCGSGQVECNGLGA-APP----ATLAEFTLGSGGQDFYDVSLVD 136 (350)
Q Consensus 62 pG~S~si~vP~~WsGRiWaRTGCsfd~~G~~~C~TGDCgsG~l~C~g~G~-~pP----aTLAEFTL~~~g~DfYDVSLVD 136 (350)
+|++.++.+|.-++||||=-.+=. =.|- ...+ |.+.++=.-.-. .|- -..+|||+.. ..-|=++|.||
T Consensus 62 ~G~~~titiP~i~sgRIyfS~g~~----L~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~-~~l~~N~S~VD 134 (369)
T cd09220 62 PGSTTTVTIPILAGGRIWFSVDDK----LTFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNS-GQLYANISYVD 134 (369)
T ss_pred CCCceeEEcccccceEEEEEcCCe----EEEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecC-CceEeccccee
Confidence 578899999998999999432110 0111 1111 212222111111 111 1569999954 34689999999
Q ss_pred ccCCCcEEEecC
Q 018793 137 GYNLPMIVESSG 148 (350)
Q Consensus 137 GyNlPm~I~P~g 148 (350)
-|.+||.|+-.+
T Consensus 135 ~~~~P~~l~l~~ 146 (369)
T cd09220 135 FVGLPLGLSLTT 146 (369)
T ss_pred eeccCeEEEEEc
Confidence 999999998764
No 11
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=49.39 E-value=13 Score=37.38 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=27.3
Q ss_pred ceEEEEeccCCCceeeeccccccCCCcEEEecC
Q 018793 116 TLAEFTLGSGGQDFYDVSLVDGYNLPMIVESSG 148 (350)
Q Consensus 116 TLAEFTL~~~g~DfYDVSLVDGyNlPm~I~P~g 148 (350)
..+|||+. ...-|-++|.||-|.|||.|+-.+
T Consensus 124 df~EFT~n-~~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 124 DFIEFTYN-ATGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEEec-CCceEecccceeeeccCeEEEEEc
Confidence 55999996 356889999999999999998775
No 12
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=48.50 E-value=7.6 Score=38.99 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=19.7
Q ss_pred CcchhHhhhcCC--CCccccCCCC
Q 018793 205 SVYSQVFKSACP--KSYSYAYDDA 226 (350)
Q Consensus 205 s~YS~~FK~aCP--~AYSYayDD~ 226 (350)
+.|+|++++... .+|.|||||-
T Consensus 276 N~Yar~vH~~~idg~aYaF~YDDV 299 (319)
T cd09214 276 NYYAQFWHAHSINGLAYGFPYDDV 299 (319)
T ss_pred hHHHHHHHHhccCCCeeecccccc
Confidence 569999999998 8999999994
No 13
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=45.80 E-value=9.1 Score=39.26 Aligned_cols=23 Identities=30% Similarity=0.793 Sum_probs=20.3
Q ss_pred CCcchhHhhhcCC--CCccccCCCC
Q 018793 204 PSVYSQVFKSACP--KSYSYAYDDA 226 (350)
Q Consensus 204 ps~YS~~FK~aCP--~AYSYayDD~ 226 (350)
-++|++++++.-+ .+|.|||||-
T Consensus 320 tNhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 320 TNHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred chHHHHHHHHhccCCCeeccccccc
Confidence 3579999999998 7899999995
No 14
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=39.14 E-value=16 Score=30.61 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=7.0
Q ss_pred HHHHHhhcccceEE
Q 018793 17 VLLATSQGVLSATF 30 (350)
Q Consensus 17 l~l~~~~~a~a~tf 30 (350)
++||+++.+.++..
T Consensus 15 ~lLlisSevaa~~~ 28 (95)
T PF07172_consen 15 ALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHhhhhhHHh
Confidence 44444445555555
No 15
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=38.95 E-value=13 Score=37.83 Aligned_cols=22 Identities=36% Similarity=0.757 Sum_probs=19.5
Q ss_pred CcchhHhhhcCC--CCccccCCCC
Q 018793 205 SVYSQVFKSACP--KSYSYAYDDA 226 (350)
Q Consensus 205 s~YS~~FK~aCP--~AYSYayDD~ 226 (350)
+.|++++++.-. .+|.|||||-
T Consensus 310 NhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 310 NHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred hHHHHHHHHhccCCCeeecCcccc
Confidence 569999999988 6899999994
No 16
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=36.79 E-value=46 Score=29.37 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=36.3
Q ss_pred ceEEEEEeCCCCcccceeecCCCCCCCCCCCcccCCCCeEEEEeCCCCceeeec
Q 018793 27 SATFTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSFVAPTGWSGRFWG 80 (350)
Q Consensus 27 a~tfTI~N~C~~TVWPgi~~~~G~p~l~~~Gf~L~pG~S~si~vP~~WsGRiWa 80 (350)
.+.++|+|+++.+|-+=++-..|.+..- ..|+||+...++ .+.|..|-
T Consensus 8 ~~~v~F~N~t~~~v~~~Wid~~G~~~~Y---~~l~pg~~~~~~---Ty~~H~W~ 55 (141)
T cd05468 8 PSTVRFVNRTDRPVELYWIDYDGKPVSY---GTLQPGETVRQN---TYVGHPWL 55 (141)
T ss_pred eEEEEEEeCCCCeEEEEEECCCCCEEEe---eeeCCCCEEeec---ccCCCcEE
Confidence 4789999999999988888766665422 379999987553 56777774
No 17
>PHA03094 dUTPase; Provisional
Probab=31.73 E-value=37 Score=29.98 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=24.1
Q ss_pred CcccCCCCeEE------EEeCCCCceeeecccCcc
Q 018793 57 GFELPQDSSRS------FVAPTGWSGRFWGRTRCN 85 (350)
Q Consensus 57 Gf~L~pG~S~s------i~vP~~WsGRiWaRTGCs 85 (350)
.+.|+|++... +.+|.+|.|+|++|.+-.
T Consensus 35 ~~~i~P~~~~lv~Tg~~i~ip~g~~g~i~~RSsla 69 (144)
T PHA03094 35 DYTVPPKERILVKTDISLSIPKFCYGRIAPRSGLS 69 (144)
T ss_pred CeEECCCCEEEEEcCeEEEcCCCEEEEEEcccccc
Confidence 46899999877 678999999999997553
No 18
>PF01847 VHL: von Hippel-Lindau disease tumour suppressor protein; InterPro: IPR022772 Von Hippel-Lindau disease tumor suppressor (VHL) has two domains: a roughly 100-residue N-terminal domain rich in beta sheet (beta domain) and a smaller alpha-helical domain (alpha domain), held together by two linkers and a polar interface. A large portion of the alpha domain surface, and a small portion of the beta domain, interact with ElonginC. About half of the tumorigenic mutations map to the alpha domain and its residues that contact ElonginC. The remaining mutations map to the beta domain, and significantly, to a beta domain surface patch uninvolved in ElonginC binding. This suggests that two intact macromolecular binding sites may be required for the tumor suppressor effects of VHL []. This entry represents both beta and alpha domains of VHL.; PDB: 3ZRF_L 3ZRC_C 1LM8_V 1LQB_C 1VCB_F.
Probab=30.33 E-value=43 Score=30.68 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=30.1
Q ss_pred cceEEEEEeCCCCcccceeecCCCCCCCCCCCcccCCCCeEEEEeCCCCceeee
Q 018793 26 LSATFTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSFVAPTGWSGRFW 79 (350)
Q Consensus 26 ~a~tfTI~N~C~~TVWPgi~~~~G~p~l~~~Gf~L~pG~S~si~vP~~WsGRiW 79 (350)
....++|.|+++.+|-+-++.-.|.+..- -.|+||+...++ .+.+..|
T Consensus 13 ~~s~V~F~N~s~r~V~v~Wldy~G~~~~Y---~~L~Pg~~~~~~---TY~tHpW 60 (156)
T PF01847_consen 13 EPSFVRFVNRSPRTVDVYWLDYDGKPVPY---GTLKPGQGRRQN---TYVTHPW 60 (156)
T ss_dssp SEEEEEEEE-SSS-EEEEEE-TTS-EEE------B-TTEEEEEE---EETT-EE
T ss_pred CceEEEEEECCCCEEEEEEEcCCCcEeec---cccCCCCeEEcc---cccCCcE
Confidence 45789999999999988887766765432 369999988875 3556666
No 19
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=27.08 E-value=52 Score=25.33 Aligned_cols=23 Identities=43% Similarity=0.683 Sum_probs=18.0
Q ss_pred cccCCCCeEEEEeCCCC-----ceeeec
Q 018793 58 FELPQDSSRSFVAPTGW-----SGRFWG 80 (350)
Q Consensus 58 f~L~pG~S~si~vP~~W-----sGRiWa 80 (350)
|+|.||+..++.+..+. +|++|-
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWl 29 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVWL 29 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEEE
Confidence 68889998888877664 488884
No 20
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=26.19 E-value=22 Score=31.97 Aligned_cols=9 Identities=67% Similarity=1.113 Sum_probs=7.0
Q ss_pred cccccCCCc
Q 018793 134 LVDGYNLPM 142 (350)
Q Consensus 134 LVDGyNlPm 142 (350)
|||||||=-
T Consensus 2 lIDGYNli~ 10 (166)
T PF05991_consen 2 LIDGYNLIH 10 (166)
T ss_pred eEcchhhhC
Confidence 689999743
No 21
>PF06282 DUF1036: Protein of unknown function (DUF1036); InterPro: IPR009380 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.92 E-value=93 Score=26.58 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=29.6
Q ss_pred ceEEEEEeCCCCcccceeecCCCCCCCCCCC-cccCCCCeEEE
Q 018793 27 SATFTFVNKCDYTIWPGILANAGSPRLDSTG-FELPQDSSRSF 68 (350)
Q Consensus 27 a~tfTI~N~C~~TVWPgi~~~~G~p~l~~~G-f~L~pG~S~si 68 (350)
.+-|+|-|+-++.|+.+|--..+. .-.+-| |+|+||+-..+
T Consensus 3 ~a~~~vCN~T~~~v~vAigy~~~~-~W~seGWw~i~pg~C~~v 44 (115)
T PF06282_consen 3 HAGLRVCNRTSSPVGVAIGYRDGG-GWVSEGWWRIDPGECATV 44 (115)
T ss_pred cCCcEEecCCCCeEEEEEEEEcCC-CcEEeeeEEeCCCceEEe
Confidence 356899999999999999654433 223345 48999986665
No 22
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=23.31 E-value=1.4e+02 Score=26.68 Aligned_cols=22 Identities=9% Similarity=0.110 Sum_probs=19.7
Q ss_pred cccCCCCeEEEEeCCCCceeee
Q 018793 58 FELPQDSSRSFVAPTGWSGRFW 79 (350)
Q Consensus 58 f~L~pG~S~si~vP~~WsGRiW 79 (350)
..|+||+++++.++..=.|++|
T Consensus 94 ~~I~pGet~TitF~adKpG~Y~ 115 (135)
T TIGR03096 94 EVIKAGETKTISFKADKAGAFT 115 (135)
T ss_pred eEECCCCeEEEEEECCCCEEEE
Confidence 4689999999999988899998
Done!