Query 018794
Match_columns 350
No_of_seqs 31 out of 33
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 04:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF15348 GEMIN8: Gemini of Caj 53.8 8.8 0.00019 36.2 2.0 25 252-276 184-208 (209)
2 PRK07668 hypothetical protein; 38.3 2.5E+02 0.0054 27.4 9.2 62 125-189 102-164 (254)
3 PRK12361 hypothetical protein; 21.9 98 0.0021 32.0 3.6 23 239-261 66-88 (547)
4 PRK09459 pspG phage shock prot 20.9 4.1E+02 0.0088 22.2 6.3 17 172-188 2-18 (76)
5 PF06112 Herpes_capsid: Gammah 20.8 62 0.0013 29.6 1.7 39 226-264 23-64 (147)
6 COG4413 Utp Urea transporter [ 19.4 2.1E+02 0.0046 29.0 5.2 66 206-282 70-135 (319)
7 PRK10435 cadB lysine/cadaverin 18.7 4.8E+02 0.01 25.8 7.5 47 238-286 356-402 (435)
8 PF06712 DUF1199: Protein of u 16.7 45 0.00098 25.7 -0.1 48 79-135 3-50 (52)
9 TIGR01842 type_I_sec_PrtD type 15.3 8.2E+02 0.018 25.0 8.4 19 143-161 22-40 (544)
10 COG0387 ChaA Ca2+/H+ antiporte 14.9 1.3E+03 0.029 24.0 10.2 151 173-332 108-313 (368)
No 1
>PF15348 GEMIN8: Gemini of Cajal bodies-associated protein 8
Probab=53.81 E-value=8.8 Score=36.20 Aligned_cols=25 Identities=36% Similarity=0.853 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhhcCCCCcccccee
Q 018794 252 CAAQLAFETNLDKRGSSCWPLIPII 276 (350)
Q Consensus 252 l~VQ~afE~l~~~~kSP~WplvPiI 276 (350)
-.+|+.|++..+..+..-||+||+=
T Consensus 184 aalql~fd~~~D~~~P~~WP~IPLk 208 (209)
T PF15348_consen 184 AALQLSFDKHCDRKQPKYWPVIPLK 208 (209)
T ss_pred HHHHHHHHhhhcccCCCCCCCCCCC
Confidence 4689999999999999999999973
No 2
>PRK07668 hypothetical protein; Validated
Probab=38.32 E-value=2.5e+02 Score=27.44 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=40.8
Q ss_pred cCCCceEeehh-hHHHHHhcccccccchHHHHHHhccchHHHHHHHhhhhHHHHHHHHHHHHHhhc
Q 018794 125 EDKGSFLWILA-PVVLISSLILPQMFLGNVIEDFIKDNLLMEIVSSLTFESMFYVGLAIFLRITDR 189 (350)
Q Consensus 125 ~~~~s~LWllG-P~vLvAS~i~P~l~Lp~vissif~d~~lt~~lslf~~EalFy~G~alFLlmaD~ 189 (350)
+-+.+..=++| |.+++...++|-+.+++. .|++..--.--+.+++=.+.-+++.++..+.|+
T Consensus 102 ~~~~s~~~iig~~~~~~l~i~~~~~~~r~~---~fk~~~~~~~~i~~~~~~~~p~~l~i~i~~l~k 164 (254)
T PRK07668 102 PLTYSLIQLIGYPISLILTIIGLIFLLRMA---SFKSKLTEKWFLIIYLVILIPMLLIVAIMFLNK 164 (254)
T ss_pred ceeeeehHHhhHHHHHHHHHHHHHHHHHHH---HHhccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555 677777788888888855 456665554555566666666777778888886
No 3
>PRK12361 hypothetical protein; Provisional
Probab=21.92 E-value=98 Score=31.96 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 018794 239 LPALVAVLPFLVGCAAQLAFETN 261 (350)
Q Consensus 239 ~~a~vaL~PYLvgl~VQ~afE~l 261 (350)
+++-.+++|||+|.-+=..+.+.
T Consensus 66 ~~~~~l~~P~l~~~~~~~~~~r~ 88 (547)
T PRK12361 66 WYIRWVFIPFLLGTRLYNAWARK 88 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 56666999999988764444433
No 4
>PRK09459 pspG phage shock protein G; Reviewed
Probab=20.92 E-value=4.1e+02 Score=22.16 Aligned_cols=17 Identities=29% Similarity=0.663 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHhh
Q 018794 172 FESMFYVGLAIFLRITD 188 (350)
Q Consensus 172 ~EalFy~G~alFLlmaD 188 (350)
+|.+|.+|..+-|+++-
T Consensus 2 ~EllFvl~F~~~LlvTG 18 (76)
T PRK09459 2 LELLFVIGFFVMLLVTG 18 (76)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 58888888888888774
No 5
>PF06112 Herpes_capsid: Gammaherpesvirus capsid protein; InterPro: IPR009299 This family consists of several Gammaherpesvirus capsid proteins. The exact function of this family is unknown.; GO: 0019028 viral capsid
Probab=20.78 E-value=62 Score=29.62 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=24.7
Q ss_pred hhhhhhhcccccchhhHH---HHHHHHHHHHHHHHHHHHhhh
Q 018794 226 PLFAVYVTWPVLRLPALV---AVLPFLVGCAAQLAFETNLDK 264 (350)
Q Consensus 226 Pl~~~~~~WP~tg~~a~v---aL~PYLvgl~VQ~afE~l~~~ 264 (350)
|++..+-.-|.--+.-.. +=--|||-+.+|..||+|++.
T Consensus 23 plv~~~~~L~q~Nms~~~y~~a~r~YLVFL~Aq~~Yd~yv~~ 64 (147)
T PF06112_consen 23 PLVAKLQALPQNNMSDAEYREAQRNYLVFLIAQHCYDQYVRR 64 (147)
T ss_pred HHHHHHHhhccCCCCHHHHHHhhhchhhhhhHHHHHHHHHHH
Confidence 344444444444322222 334599999999999999864
No 6
>COG4413 Utp Urea transporter [Amino acid transport and metabolism]
Probab=19.36 E-value=2.1e+02 Score=28.99 Aligned_cols=66 Identities=24% Similarity=0.258 Sum_probs=44.3
Q ss_pred cccccchhhHhhhhhhhhhhhhhhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceehhhHHH
Q 018794 206 TGLRGYLTSAFFTTGLKVVAPLFAVYVTWPVLRLPALVAVLPFLVGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRL 282 (350)
Q Consensus 206 t~~~gy~~sa~~~~~lgviiPl~~~~~~WP~tg~~a~vaL~PYLvgl~VQ~afE~l~~~~kSP~WplvPiIFevYRl 282 (350)
.++.||+ ....|...|.+.- |.|--.+....--++-..||.++-..++.||.|... .|+|..-+=+
T Consensus 70 ~GlyGyN-----~vLvg~al~~fla-----~sp~l~~i~vlg~lvSv~v~aav~~ilr~~kvp~lT-~pFVlttWfl 135 (319)
T COG4413 70 AGLYGYN-----GVLVGAALPFFLA-----WSPGLWSIVVLGCLVSVAVQAAVLHILRTWKVPALT-LPFVLTTWFL 135 (319)
T ss_pred hcccccc-----HHHHHHHHHHHhc-----CCcceehHHHHHHHHHHHHHHHHHHHhhhccCcccc-cchHHHHHHH
Confidence 5688998 4555666665443 444333334444577889999999999999999865 3666555433
No 7
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=18.71 E-value=4.8e+02 Score=25.75 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=34.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccceehhhHHHHHHh
Q 018794 238 RLPALVAVLPFLVGCAAQLAFETNLDKRGSSCWPLIPIIFEVYRLYQLS 286 (350)
Q Consensus 238 g~~a~vaL~PYLvgl~VQ~afE~l~~~~kSP~WplvPiIFevYRl~QL~ 286 (350)
.......+.||+.-+..++-+++. .+|.+-.|+++++--+|=+..+.
T Consensus 356 ~~~~~~~l~~y~~~~~~~ir~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 402 (435)
T PRK10435 356 GIAVLLTMLPYFYSCVDLIRFEGV--NIRNFVSLICSVLGCVFCFIALM 402 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHH
Confidence 356677899999999999966542 23455567888887777777765
No 8
>PF06712 DUF1199: Protein of unknown function (DUF1199); InterPro: IPR009588 This family consists of several hypothetical Feline immunodeficiency virus (FIV) proteins. Members of this family are typically around 67 residues long and are often annotated as ORF3 proteins. The function of this family is unknown.
Probab=16.68 E-value=45 Score=25.69 Aligned_cols=48 Identities=23% Similarity=0.400 Sum_probs=32.1
Q ss_pred CCCCCCCCccccCCCCCCCCCcceEeecCCCccccccCccccCccccCCCceEeehh
Q 018794 79 SGENSSLPVAIFNGPEPFRGKSGSVSFCGLTHQLVEEGKLMSAPFQEDKGSFLWILA 135 (350)
Q Consensus 79 ~~~~~~~p~~~~~~~e~~~GK~G~VSF~~~~~q~~eE~~l~ss~~~~~~~s~LWllG 135 (350)
+|.+..||++.|-.-..|.-.+|+= +. |-.-+|+|..+.+++|+=|||
T Consensus 3 ~rn~~~v~~~~~r~~ni~~~nq~sg--------sm-etstisspsrrirnnflgllg 50 (52)
T PF06712_consen 3 HRNSGFVPASIYRNNNIFTNNQGSG--------SM-ETSTISSPSRRIRNNFLGLLG 50 (52)
T ss_pred ccCCCcceeeEeecCCEeccCCCCC--------cc-ccccccChhHHHHhhhhhhhc
Confidence 4566778877665555554444432 22 445689999999999988776
No 9
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=15.26 E-value=8.2e+02 Score=25.01 Aligned_cols=19 Identities=11% Similarity=0.489 Sum_probs=12.8
Q ss_pred cccccccchHHHHHHhccc
Q 018794 143 LILPQMFLGNVIEDFIKDN 161 (350)
Q Consensus 143 ~i~P~l~Lp~vissif~d~ 161 (350)
.+++++++..++..++.+.
T Consensus 22 ~l~~p~~~~~iid~~~~~~ 40 (544)
T TIGR01842 22 MLAPPLYMLQVYDRVLTSG 40 (544)
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 4556778888887776443
No 10
>COG0387 ChaA Ca2+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=14.86 E-value=1.3e+03 Score=23.99 Aligned_cols=151 Identities=21% Similarity=0.306 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHHHhhccCCCcccCCCCCcccccccccchhhHhhhhhhhhhhhhhhhh----hcc-cccchhhHHHHHH
Q 018794 173 ESMFYVGLAIFLRITDRVQRPYLQFSPKRWGLITGLRGYLTSAFFTTGLKVVAPLFAVY----VTW-PVLRLPALVAVLP 247 (350)
Q Consensus 173 EalFy~G~alFLlmaD~~~RP~~q~s~~~~~~lt~~~gy~~sa~~~~~lgviiPl~~~~----~~W-P~tg~~a~vaL~P 247 (350)
+.+...|.++++ --.+|=.+.+++.+.+ -|..--..+++..+++|.++=+ .-| ++..-.+.+.++=
T Consensus 108 ~~llv~Glslll---Gglr~~~Q~fN~~~a~------~~~~~L~~~~~ialv~P~~~~~~~~~~~~~~~s~~~avv~i~~ 178 (368)
T COG0387 108 NLLLVVGLSLLL---GGLRHKTQPFNPHGAG------TYLALLFTAATIALVLPTFFPYTGGGNFSLGQSLFVAVVLIAL 178 (368)
T ss_pred HHHHHHHHHHHH---cchhhceeecchhhHH------HHHHHHHHHHHHHhhhhhhhcccCCCcchHhHHHHHHHHHHHH
Confidence 344555666544 3344433345544442 3444445556888999988762 223 2223455668889
Q ss_pred HHHHHHHHHHHHHHh-----------hh-----cCCCCccc--------c---cee----------------------hh
Q 018794 248 FLVGCAAQLAFETNL-----------DK-----RGSSCWPL--------I---PII----------------------FE 278 (350)
Q Consensus 248 YLvgl~VQ~afE~l~-----------~~-----~kSP~Wpl--------v---PiI----------------------Fe 278 (350)
|.+++.-|..+-+.. +. ++.|.|.+ + .|+ |-
T Consensus 179 Y~lfL~fql~tH~~~f~~~~~~e~~~ee~~~h~~~~~~~s~~~s~~vLl~~tv~v~~lae~lv~~le~~l~~~g~~~~F~ 258 (368)
T COG0387 179 YGLFLFFQLKTHASLFWQVHEAEGEAEEDDPHHDDPSKWSVLLSTGVLLIATVLVALLAEILVGSLEAVLESLGAPPAFV 258 (368)
T ss_pred HHHHHHhhhhhhhhhhcccccccccCCCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 999999998765442 11 12223432 1 221 11
Q ss_pred hHHHHHHh-HHHHHHHHHhhHhcCCCCCchhhhhhhhhhHHHHHHHHHHHHHHHH
Q 018794 279 VYRLYQLS-KAANFIERLMFSMKDLPRSPELLERGSAMVSMVVIFQILGVVCLWS 332 (350)
Q Consensus 279 vYRl~QL~-RAaqLv~~L~F~vk~~e~t~~~l~i~~sL~~ll~vlQ~LgViciWS 332 (350)
.-=+--|- -+++.++++.+.+||-=...-|++.++++++.+-+.=++-++.+|-
T Consensus 259 G~iIa~lVgn~~E~~tAi~aA~~~~mqls~nia~Gsalq~~lltiP~lvlis~~~ 313 (368)
T COG0387 259 GLIIAALVGNAPEHLTALRAALNNRMQLSMNIAMGSALQTALLTIPVLVLISLFT 313 (368)
T ss_pred HHHHHHHhccCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222233 5677788899999998888889999999999988888887777664
Done!