BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018797
         (350 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1U02|A Chain A, Crystal Structure Of Trehalose-6-Phosphate Phosphatase
           Related Protein
          Length = 239

 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 85/216 (39%), Gaps = 32/216 (14%)

Query: 76  VFLNYDGTLSPIVDDPDRVFMSDEMRAAVREVAKYFPTAIISGRSREKVMGFVELCNVYY 135
           +FL+YDGTL PI+ +P+  +    + + + ++ + F T I++GRS E++  F+       
Sbjct: 4   IFLDYDGTLVPIIXNPEESYADAGLLSLISDLKERFDTYIVTGRSPEEISRFL------- 56

Query: 136 AGSHGMDILAPPRPVKACEGKYHTLVPGKKGNEVLFQPAKKFLPAIQXXXXXXXXXXXXX 195
                        P+      YH       G  V    + +FL                 
Sbjct: 57  -------------PLDINXICYHGACSKINGQIVYNNGSDRFLGVFDRIYEDTRSWVSDF 103

Query: 196 QGARIEDNRFCISVHFRQVREEDYSILQEKAKAVLRNYPDFDLSEGKKVMEIR-PSIEWD 254
            G RI      +  H      +    L+ + + + R +   +   GK ++E+R P +  +
Sbjct: 104 PGLRIYRKNLAVLYHLGLXGADXKPKLRSRIEEIARIF-GVETYYGKXIIELRVPGV--N 160

Query: 255 KGHALEYLLDTLGLSNPNDVLPLYIGDDRTDEDAFK 290
           KG A+         S   +   +  GDD TDE AF+
Sbjct: 161 KGSAIR--------SVRGERPAIIAGDDATDEAAFE 188


>pdb|1WR8|A Chain A, Crystal Structure Of Hypothetical Protein Ph1421 From
           Pyrococcus Horikoshii.
 pdb|1WR8|B Chain B, Crystal Structure Of Hypothetical Protein Ph1421 From
           Pyrococcus Horikoshii
          Length = 231

 Score = 32.0 bits (71), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 254 DKGHALEYLLDTLGLSNPNDVLPLYIGDDRTDEDAFKVIKGRGQGYPIIVSSTPKETK 311
           +KG  +E   + LG+  P +V   ++GD   D DAFKV+     GY + V+  PK  K
Sbjct: 153 NKGSGIEKASEFLGIK-PKEVA--HVGDGENDLDAFKVV-----GYKVAVAQAPKILK 202


>pdb|4HVZ|A Chain A, Crystal Structure Of Brucella Abortus Immunogenic Bp26
           Protein
 pdb|4HVZ|B Chain B, Crystal Structure Of Brucella Abortus Immunogenic Bp26
           Protein
 pdb|4HVZ|C Chain C, Crystal Structure Of Brucella Abortus Immunogenic Bp26
           Protein
 pdb|4HVZ|D Chain D, Crystal Structure Of Brucella Abortus Immunogenic Bp26
           Protein
          Length = 224

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 13/96 (13%)

Query: 74  IAVFLNYDGTLSPIVDDPDRVFMSDEMRAAVREVAKYFPTAIISGRSREKVMGFVELCNV 133
           + + +N  G L+ + D+P  V      RA    +AK    A  +G    +V+   EL   
Sbjct: 122 VTLGVNQGGDLNLVNDNPSAVINEARKRAVANAIAKAKTLADAAGVGLGRVVEISELSR- 180

Query: 134 YYAGSHGMDILAPPRPVKACEGKYHTLVPGKKGNEV 169
                       PP P+    G++ T++     N V
Sbjct: 181 ------------PPMPMPIARGQFRTMLAAAPDNSV 204


>pdb|1XC4|A Chain A, Crystal Structure Of Wild-Type Tryptophan Synthase
           Alpha-Subunits From Escherichia Coli
 pdb|1XC4|B Chain B, Crystal Structure Of Wild-Type Tryptophan Synthase
           Alpha-Subunits From Escherichia Coli
          Length = 268

 Score = 28.5 bits (62), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 272 NDVLPLYIGDDRTDEDAFKVIKGRGQGYPIIVSS---TPKETKASYSLN 317
           ++V P++I     D+D  + I   G+GY  ++S    T  E +A+  LN
Sbjct: 146 HNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLN 194


>pdb|1V7Y|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
           From Escherichia Coli At Room Temperature
 pdb|1V7Y|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
           From Escherichia Coli At Room Temperature
 pdb|1WQ5|A Chain A, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
           From Escherichia Coli
 pdb|1WQ5|B Chain B, Crystal Structure Of Tryptophan Synthase Alpha-Subunit
           From Escherichia Coli
          Length = 268

 Score = 28.5 bits (62), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 272 NDVLPLYIGDDRTDEDAFKVIKGRGQGYPIIVSS---TPKETKASYSLN 317
           ++V P++I     D+D  + I   G+GY  ++S    T  E +A+  LN
Sbjct: 146 HNVAPIFICPPNADDDLLRQIASYGRGYTYLLSRAGVTGAENRAALPLN 194


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.135    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,232,517
Number of Sequences: 62578
Number of extensions: 414982
Number of successful extensions: 732
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 8
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)