BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018798
         (350 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LWT|X Chain X, Crystal Structure Of The Yeast Sac1: Implications For Its
           Phosphoinositide Phosphatase Function
          Length = 505

 Score =  141 bits (356), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/271 (33%), Positives = 136/271 (50%), Gaps = 22/271 (8%)

Query: 62  KIRTIFGVVGVLKLLAGSYLIVITERECVGSYLGHPIYKVASLKILPCDHSLNNSSAEQK 121
           ++  I  ++G +KL    Y I+    E  G + GH  Y+V    I+       NS  + +
Sbjct: 52  EVVKIASLMGFIKLKLNRYAIIANTVEETGRFNGHVFYRVLQHSIVSTKF---NSRIDSE 108

Query: 122 KVEAEFSCLLKLAERTPGLYFSYDTNLTLSVQRLNTLGDESKLLPLWRQAEPRFLWNNYL 181
             EAE+  LL+L  +    YFSY  +LT S+QR   +G  +     W+ A+ RF WN+YL
Sbjct: 109 --EAEYIKLLELHLKNSTFYFSYTYDLTNSLQRNEKVGPAAS----WKTADERFFWNHYL 162

Query: 182 MEAL-----IDNKLDPFLLPVIQGSFHHFQTAIGRDIIDVTLIARRCTRRNGTRMWRRGA 236
            E L      D ++D F+ PVI G        +    I + LI RR   R GTR +RRG 
Sbjct: 163 TEDLRNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIFRAGTRYFRRGV 222

Query: 237 DSDGYVANFVETEQVVQMNG------FMASFVQVRGSIPFLWEQTVDLTYKPKFEILRAE 290
           D DG V NF ETEQ++           + SF+Q RGS+P  W +  +L YKP   ++  E
Sbjct: 223 DKDGNVGNFNETEQILLAENPESEKIHVFSFLQTRGSVPIYWAEINNLKYKPN--LVLGE 280

Query: 291 EAPRVVERHFLDLRKKYGNVLAVDLVNKPMH 321
            +    ++HF   ++ YG+   V+LVN+  H
Sbjct: 281 NSLDATKKHFDQQKELYGDNYLVNLVNQKGH 311


>pdb|4DDP|A Chain A, Crystal Structure Of Beclin 1 Evolutionarily Conserved
           Domain(Ecd)
          Length = 210

 Score = 28.9 bits (63), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 155 LNTLGDESKLLPLWRQAEPRFLWNNYLMEALI 186
           L +L D+SK LPL+     RF W+N    A++
Sbjct: 99  LESLTDKSKELPLYCSGGLRFFWDNKFDHAMV 130


>pdb|3DWG|A Chain A, Crystal Structure Of A Sulfur Carrier Protein Complex
           Found In The Cysteine Biosynthetic Pathway Of
           Mycobacterium Tuberculosis
 pdb|3DWG|B Chain B, Crystal Structure Of A Sulfur Carrier Protein Complex
           Found In The Cysteine Biosynthetic Pathway Of
           Mycobacterium Tuberculosis
          Length = 325

 Score = 27.7 bits (60), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 1   MMERAESGQKLYTRMRLWEFPDQFVVEPTDGSSGSALAISRADGSMNLIHEVPECSILRV 60
           M+E+AE+   L         P   ++EPT G++G +LA++       LI  +PE + +  
Sbjct: 60  MIEQAEADGLLR--------PGATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVER 111

Query: 61  PKIRTIFGVVGVLKLL-AGSYLIVITERECVGS 92
            ++  ++G   +      GS   V T +E   +
Sbjct: 112 RQLLELYGAQIIFSAAEGGSNTAVATAKELAAT 144


>pdb|2Q3D|A Chain A, 2.2 A Resolution Crystal Structure Of O-acetylserine
           Sulfhydrylase (oass) From Mycobacterium Tuberculosis In
           Complex With The Reaction Intermediate
           Alpha-aminoacrylate
          Length = 313

 Score = 27.7 bits (60), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 21  PDQFVVEPTDGSSGSALAISRADGSMNLIHEVPEC 55
           PD  ++EPT G++G ALA+  A      +  +PE 
Sbjct: 66  PDTIILEPTSGNTGIALAMVCAARGYRCVLTMPET 100


>pdb|2Q3B|A Chain A, 1.8 A Resolution Crystal Structure Of O-Acetylserine
           Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
           Tuberculosis
 pdb|2Q3C|A Chain A, 2.1 A Resolution Crystal Structure Of O-Acetylserine
           Sulfhydrylase (Oass) Holoenzyme From Mycobacterium
           Tuberculosis In Complex With The Inhibitory Peptide Dfsi
          Length = 313

 Score = 27.7 bits (60), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 21  PDQFVVEPTDGSSGSALAISRADGSMNLIHEVPEC 55
           PD  ++EPT G++G ALA+  A      +  +PE 
Sbjct: 66  PDTIILEPTSGNTGIALAMVCAARGYRCVLTMPET 100


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.138    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,539,835
Number of Sequences: 62578
Number of extensions: 379279
Number of successful extensions: 760
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 746
Number of HSP's gapped (non-prelim): 13
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)