Query 018798
Match_columns 350
No_of_seqs 165 out of 770
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 06:13:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lwt_X Phosphoinositide phosph 100.0 5.6E-86 1.9E-90 671.3 29.3 316 16-346 7-342 (505)
2 1zrx_A Stomoxyn; helical pepti 14.4 59 0.002 20.6 1.0 12 296-307 3-14 (42)
3 1xv5_A AGT, DNA alpha-glucosyl 7.7 1.1E+02 0.0036 27.6 0.6 16 265-280 316-332 (401)
4 1ta3_B Endo-1,4-beta-xylanase; 7.6 64 0.0022 29.8 -0.9 51 263-317 78-129 (303)
5 3r45_C Holliday junction recog 7.5 1.6E+02 0.0054 21.7 1.4 19 292-310 26-44 (81)
6 2rbg_A Putative uncharacterize 7.4 5.8E+02 0.02 20.4 4.7 43 279-321 2-46 (126)
7 2jni_A Arenicin-2; peptide, an 7.2 2E+02 0.0068 16.3 1.4 11 258-268 4-14 (26)
8 3cui_A EXO-beta-1,4-glucanase; 7.0 78 0.0027 29.1 -0.7 28 291-318 99-127 (315)
9 3ndh_A Restriction endonucleas 6.6 1.2E+02 0.004 25.8 0.3 15 267-282 200-214 (225)
10 2pif_A UPF0317 protein pspto_5 6.4 1.2E+02 0.0039 28.0 0.2 24 265-288 223-251 (276)
No 1
>3lwt_X Phosphoinositide phosphatase SAC1; SAC3/FIG4, lipid metabol endoplasmic reticulum, hydrolase, membrane, transmembrane; 1.96A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-86 Score=671.28 Aligned_cols=316 Identities=30% Similarity=0.499 Sum_probs=280.8
Q ss_pred EEEEECCEEEEEeCCC--CCcceEEEECCCCceeeecCCCccccCCCceeeEEEEEEeeEEecceeEEEEEeceeEeeee
Q 018798 16 RLWEFPDQFVVEPTDG--SSGSALAISRADGSMNLIHEVPECSILRVPKIRTIFGVVGVLKLLAGSYLIVITERECVGSY 93 (350)
Q Consensus 16 ~L~~~~~~~~i~~~~~--~~~~~L~Idr~~g~i~~~~~~~~~~~~~~~~~~~~~GilG~i~l~~~~yL~vIt~~~~vg~i 93 (350)
-..++||+|+|+|.++ ..+.+|.|||.+|++++.+..+. .....+..++||||+|++.++.||+|||+++.||.|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~i~r~~~~~~~~~~~~~---~~~~~~~~i~GilG~i~l~~~~YlivIT~~~~vg~i 83 (505)
T 3lwt_X 7 VYVQNADGIFFKLAEGKGTNDAVIHLANQDQGVRVLGAEEF---PVQGEVVKIASLMGFIKLKLNRYAIIANTVEETGRF 83 (505)
T ss_dssp EEEEETTEEEEEESSCCSSCCCEEEEETTTCCEEEECGGGS---CSSSCCEEESEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred eEEECCCEEEEEECCCCCCCcceEEEEcCCCeEEecccccC---CCcCceeEEEEEEEEEEECCCcEEEEEEccEEEEEE
Confidence 3456999999999763 24678999999999998764321 122347799999999999999999999999999999
Q ss_pred CCccEEEEEeEEEEeCCCCCCCCchhhhhhhHHHHHHhhhhcCCCceEEecCCCccchhhhhcccCCCCCCCccccCCCC
Q 018798 94 LGHPIYKVASLKILPCDHSLNNSSAEQKKVEAEFSCLLKLAERTPGLYFSYDTNLTLSVQRLNTLGDESKLLPLWRQAEP 173 (350)
Q Consensus 94 ~g~~Iy~I~~~~~ipl~~~~~~~~~~~~~~E~~~~~llk~~~~~~~fYfS~~~DLT~s~Q~~~~~~~~~~~~~~~~~~d~ 173 (350)
+||.||+|+++++||+..+. ...++|.+|+++|+.++++++|||||+||||+++|++..... .+.|+.+|+
T Consensus 84 ~gh~Iy~I~~~~~ipl~~~~-----~~~~~E~~yl~ll~~~l~s~~FYfS~~yDLT~slQ~~~~~~~----~~~~~~~d~ 154 (505)
T 3lwt_X 84 NGHVFYRVLQHSIVSTKFNS-----RIDSEEAEYIKLLELHLKNSTFYFSYTYDLTNSLQRNEKVGP----AASWKTADE 154 (505)
T ss_dssp TTEEEEEEEEEEEEESCTTC-----CCCHHHHHHHHHHHHHHHHCCCEECSSSCTTSCHHHHHHHCS----CCCGGGSCT
T ss_pred CCeEEEEEEEEEEEEecCcc-----ccChhHHHHHHHHHHHhcCCCEEEeCCcCCCcchhhccccCc----cccccCCCC
Confidence 99999999999999998543 345688999999999999999999999999999999875432 267889999
Q ss_pred ceeecHHhhHHHHhCC-----CCCcchheeecceeeeEeeecCceEEEEEEEeeecCCCCcccccccCCCCCceeeeEEE
Q 018798 174 RFLWNNYLMEALIDNK-----LDPFLLPVIQGSFHHFQTAIGRDIIDVTLIARRCTRRNGTRMWRRGADSDGYVANFVET 248 (350)
Q Consensus 174 rF~WN~~l~~~~~~~~-----~~~~~~piI~Gfv~~~~~~~~~~~~~~~LISRRS~~raGtRy~~RGiD~~G~vANfVET 248 (350)
+|+||++|+++|++.. .+.|++|+||||+++..+.++++++.++||||||++||||||++||||++|||||||||
T Consensus 155 ~F~WN~~l~~~l~~~~~~~~~~~~~~~piI~Gfv~~~~~~~~~~~~~~tLISRRS~~raGtRy~~RGidd~G~VANfVET 234 (505)
T 3lwt_X 155 RFFWNHYLTEDLRNFAHQDPRIDSFIQPVIYGYAKTVDAVLNATPIVLGLITRRSIFRAGTRYFRRGVDKDGNVGNFNET 234 (505)
T ss_dssp TTCTTTGGGHHHHHHHTTCGGGGGGCCCCBSSEEEEEEEEETTEEEEEEEEEEECCCCCSSSCCSSSBCTTSCCSCEEEE
T ss_pred ceechHHHHHHHHHhcccCcchhhhhhHhhcCceEEEEEEECCceEEEEEEEEEecccCCccccccCcCCCCCccceeeE
Confidence 9999999999999853 34799999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeCC------eeEEEEEeecCcceeEeEecCCCCCCceEEecCCCcHHHHHHHHHHHHHhcCCeEEEECcCCCCcc
Q 018798 249 EQVVQMNG------FMASFVQVRGSIPFLWEQTVDLTYKPKFEILRAEEAPRVVERHFLDLRKKYGNVLAVDLVNKPMHF 322 (350)
Q Consensus 249 EqIv~~~~------~~~SfvQiRGSVPlfWsQ~~~l~~kP~i~i~~~~~~~~a~~~HF~~l~~~YG~i~iVNLl~~kg~E 322 (350)
|||++.++ .++||||+||||||||+|.++++|||+|.+.+ ++.+||++||++|.++||+++|||||++||+|
T Consensus 235 EqIv~~~~~~~~~~~~~SfvQiRGSVPlfW~Q~~~l~~kP~i~i~~--~~~~a~~kHF~~L~~~YG~~~iVNLl~~k~~E 312 (505)
T 3lwt_X 235 EQILLAENPESEKIHVFSFLQTRGSVPIYWAEINNLKYKPNLVLGE--NSLDATKKHFDQQKELYGDNYLVNLVNQKGHE 312 (505)
T ss_dssp EEEEEEECTTTCCEEEEEEEEEEECCCSBSCCCCCSSSCCCCCCCH--HHHHHHHHHHHHHHHHHSEEEEEEECCCSSCC
T ss_pred EEEEEeCCCCCCCccEEEEEEeccccCceeeecCCcCcCCCeeecC--chHHHHHHHHHHHHHHhCCcEEEecccCCCch
Confidence 99999877 89999999999999999999999999999863 38899999999999999999999999999999
Q ss_pred chhhHhHHHh-------hhcccchhhHHHhh
Q 018798 323 YLLYLHAYLQ-------YQLSYSSLLCHLLL 346 (350)
Q Consensus 323 ~~L~~~~~~~-------~~~~~~~~~~h~~~ 346 (350)
++|+ ++|.+ ..+.|..+|+|-..
T Consensus 313 ~~L~-~~y~~~v~~l~~~~i~y~~fDfh~~~ 342 (505)
T 3lwt_X 313 LPVK-EGYESVVHALNDPKIHYVYFDFHHEC 342 (505)
T ss_dssp CHHH-HHHHHHHHHHCCTTEEEEEECCCSST
T ss_pred hHHH-HHHHHHHHHhcccCCceEEecchHhh
Confidence 9997 77754 34899999999643
No 2
>1zrx_A Stomoxyn; helical peptide in TFE, antimicrobial protein, antibiotic; NMR {Synthetic}
Probab=14.37 E-value=59 Score=20.62 Aligned_cols=12 Identities=42% Similarity=0.584 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhc
Q 018798 296 VERHFLDLRKKY 307 (350)
Q Consensus 296 ~~~HF~~l~~~Y 307 (350)
|+|||+++.+.-
T Consensus 3 frk~fn~~ikki 14 (42)
T 1zrx_A 3 FRKHFNKLVKKV 14 (42)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 689999988753
No 3
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=7.68 E-value=1.1e+02 Score=27.63 Aligned_cols=16 Identities=38% Similarity=0.953 Sum_probs=11.8
Q ss_pred ecCcceeEeEec-CCCC
Q 018798 265 RGSIPFLWEQTV-DLTY 280 (350)
Q Consensus 265 RGSVPlfWsQ~~-~l~~ 280 (350)
-|.||+||.... ++++
T Consensus 316 cgtipvfwkstgenlkf 332 (401)
T 1xv5_A 316 CGTIPVFWKSTGENLKF 332 (401)
T ss_dssp HTSEEEEEHHHHHHSBC
T ss_pred ccceeeeecccCcceEE
Confidence 489999998763 4544
No 4
>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), HYD inhibitor-hydrolase complex; HET: NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3
Probab=7.58 E-value=64 Score=29.75 Aligned_cols=51 Identities=22% Similarity=0.283 Sum_probs=29.3
Q ss_pred EeecCcceeEeEecCCCCCCceEEecCCCcHHHHHHHHHHHHHhcCC-eEEEECcC
Q 018798 263 QVRGSIPFLWEQTVDLTYKPKFEILRAEEAPRVVERHFLDLRKKYGN-VLAVDLVN 317 (350)
Q Consensus 263 QiRGSVPlfWsQ~~~l~~kP~i~i~~~~~~~~a~~~HF~~l~~~YG~-i~iVNLl~ 317 (350)
.+||-.+++=+|.|.....+. .+++-..++.+|...+.++|++ +..-+.+|
T Consensus 78 ~v~ghtlvW~~q~P~W~~~~~----~~~~~~~~~~~~i~~v~~rY~g~v~~Wdv~N 129 (303)
T 1ta3_B 78 KVRGHTLVWHSQLPSWVSSIG----DANTLRSVMTNHINEVVGRYKGKIMHWDVVN 129 (303)
T ss_dssp EEEEEEEECSSSCCHHHHTCC----CHHHHHHHHHHHHHHHHHHTTTSCSEEEEEE
T ss_pred EEEEeeccccCCCChhhhcCC----CHHHHHHHHHHHHHHHHHhcCCcceEEEeec
Confidence 478877773345443211110 1112247899999999999975 54334333
No 5
>3r45_C Holliday junction recognition protein; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=7.51 E-value=1.6e+02 Score=21.70 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHHHHhcCCe
Q 018798 292 APRVVERHFLDLRKKYGNV 310 (350)
Q Consensus 292 ~~~a~~~HF~~l~~~YG~i 310 (350)
+..-|++|...|+++|+.+
T Consensus 26 sr~RFQ~~Mq~lieKYn~P 44 (81)
T 3r45_C 26 SRRRFQRRMQRLIEKYNQP 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 4567999999999999864
No 6
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii}
Probab=7.43 E-value=5.8e+02 Score=20.36 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=31.9
Q ss_pred CCCCceEEec-CCCcH-HHHHHHHHHHHHhcCCeEEEECcCCCCc
Q 018798 279 TYKPKFEILR-AEEAP-RVVERHFLDLRKKYGNVLAVDLVNKPMH 321 (350)
Q Consensus 279 ~~kP~i~i~~-~~~~~-~a~~~HF~~l~~~YG~i~iVNLl~~kg~ 321 (350)
.|||-+.+.. .+++. ..|++-|.+....=++-++||.+..-.+
T Consensus 2 ~~k~i~~lv~v~~E~l~n~fRk~fkD~R~~GskKvviNvis~~~y 46 (126)
T 2rbg_A 2 PYKNILTLISVNNDNFENYFRKIFLDVRSSGSKKTTINVFTEIQY 46 (126)
T ss_dssp -CCSEEEEEECCGGGHHHHHHHHHHHHHHHTCSEEEEEEECSSCH
T ss_pred CCCceEEEEecchhhHHHHHHHHHHHHHhcCCceEEEEEecCCcH
Confidence 5788888775 34444 6789999998887778899999976543
No 7
>2jni_A Arenicin-2; peptide, antimicrobial, beta-sheet, antimicrobial protein; NMR {Arenicola marina} PDB: 2l8x_A 2jsb_A
Probab=7.17 E-value=2e+02 Score=16.32 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=8.7
Q ss_pred eEEEEEeecCc
Q 018798 258 MASFVQVRGSI 268 (350)
Q Consensus 258 ~~SfvQiRGSV 268 (350)
++.||.|||-.
T Consensus 4 vyayvrirgvl 14 (26)
T 2jni_A 4 VYAYVRIRGVL 14 (26)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEEEEEEE
Confidence 47899999954
No 8
>3cui_A EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine inhibitor, TIM barrel, cellulose degradation, glycosidase, hydrolase; HET: X4S; 1.50A {Cellulomonas fimi} PDB: 3cug_A* 3cuh_A* 3cuf_A* 3cuj_A* 1fh9_A* 1fh7_A 1fh8_A 1exp_A* 1fhd_A* 1j01_A* 2exo_A 2xyl_A 2his_A*
Probab=6.99 E-value=78 Score=29.11 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=20.5
Q ss_pred CcHHHHHHHHHHHHHhcCC-eEEEECcCC
Q 018798 291 EAPRVVERHFLDLRKKYGN-VLAVDLVNK 318 (350)
Q Consensus 291 ~~~~a~~~HF~~l~~~YG~-i~iVNLl~~ 318 (350)
+...++.+|...+.++|++ +.....+|+
T Consensus 99 ~~~~~~~~~i~~v~~ry~g~v~~WdV~NE 127 (315)
T 3cui_A 99 AFESAMVNHVTKVADHFEGKVASWDVVNE 127 (315)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCceEEEEeecc
Confidence 3457899999999999975 654444443
No 9
>3ndh_A Restriction endonuclease THAI; endonuclease-DNA complex, restriction enzyme, THAI, intercal hydrolase-DNA complex; HET: DNA PGE; 1.30A {Thermoplasma acidophilum}
Probab=6.60 E-value=1.2e+02 Score=25.83 Aligned_cols=15 Identities=33% Similarity=0.802 Sum_probs=10.9
Q ss_pred CcceeEeEecCCCCCC
Q 018798 267 SIPFLWEQTVDLTYKP 282 (350)
Q Consensus 267 SVPlfWsQ~~~l~~kP 282 (350)
|||++|.-. ++.|.|
T Consensus 200 sI~IeWkkT-n~~ysp 214 (225)
T 3ndh_A 200 SIKIEWKKT-NVQYNA 214 (225)
T ss_dssp EEEEECCCC-CCCCCT
T ss_pred EEEEEeeec-ccccch
Confidence 689999986 466654
No 10
>2pif_A UPF0317 protein pspto_5379; UPF0317 family, structural genomics, PSI-2, protein structur initiative; 2.30A {Pseudomonas syringae PV} SCOP: d.382.1.1 PDB: 3db9_A
Probab=6.40 E-value=1.2e+02 Score=28.01 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=16.5
Q ss_pred ecCcceeEeE-----ecCCCCCCceEEec
Q 018798 265 RGSIPFLWEQ-----TVDLTYKPKFEILR 288 (350)
Q Consensus 265 RGSVPlfWsQ-----~~~l~~kP~i~i~~ 288 (350)
-|-||+||.= ..-+..||++-|+.
T Consensus 223 ~geVPVFWaCGVTpq~av~~ak~p~aiTH 251 (276)
T 2pif_A 223 PGEVPVFWACGVTPQAAVMASGVPFAITH 251 (276)
T ss_dssp TTEEEEEEECTTHHHHHHHHHTCSEEEEE
T ss_pred CCCcceEecCCCChHHHHHhCCCceeeec
Confidence 4679999984 22345678887764
Done!