Query 018799
Match_columns 350
No_of_seqs 119 out of 163
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 06:14:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2km1_A Protein DRE2; yeast, an 24.0 17 0.00057 31.0 0.0 24 34-57 12-35 (136)
2 2khf_A PLNJ; anti-microbial, b 21.0 29 0.00098 21.0 0.7 9 26-34 2-10 (26)
3 4dgw_B PRE-mRNA-splicing facto 16.0 51 0.0017 28.4 1.4 19 5-23 96-114 (152)
4 2wx3_A MRNA-decapping enzyme 1 15.9 31 0.0011 24.7 -0.0 30 38-71 2-31 (51)
5 2hba_A BL17, 50S ribosomal pro 11.8 1.6E+02 0.0055 20.8 2.8 24 29-52 24-49 (52)
6 2cqu_A Peroxisomal D3,D2-enoyl 11.4 68 0.0023 26.3 0.8 18 56-74 86-103 (116)
7 3dnx_A Uncharacterized protein 10.7 39 0.0013 29.3 -1.0 13 20-32 65-77 (153)
8 2k9p_A Pheromone alpha factor 10.0 5.9E+02 0.02 19.4 7.9 37 255-291 11-48 (80)
9 2cop_A Acyl-coenzyme A binding 9.1 1E+02 0.0036 24.8 1.1 44 19-76 54-97 (109)
10 2wwb_C SEC61BETA, protein tran 8.4 2.7E+02 0.0094 22.2 3.2 24 123-146 65-88 (96)
No 1
>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}
Probab=23.99 E-value=17 Score=30.99 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.7
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHH
Q 018799 34 ILIPPHMAARSDVVDHYKRKFYQR 57 (350)
Q Consensus 34 ~~~pp~~~~~~~~~~~~k~k~y~~ 57 (350)
+|+||-++++||.++..|.++||+
T Consensus 12 LL~~Psv~t~pe~le~~k~~~~~~ 35 (136)
T 2km1_A 12 LLIHPAVTTTPELVENTKAQAASK 35 (136)
T ss_dssp EEECHHHHTSHHHHHHHHHHHHHT
T ss_pred EecCCcccCCHHHHHHHHHhhhcc
Confidence 357999999999999999999994
No 2
>2khf_A PLNJ; anti-microbial, bacteriocin, peptide, two-peptide, antimicrobial protein; NMR {Lactobacillus plantarum} PDB: 2khg_A
Probab=21.01 E-value=29 Score=21.05 Aligned_cols=9 Identities=33% Similarity=1.501 Sum_probs=7.0
Q ss_pred chHHHhhhc
Q 018799 26 RWADYWSNI 34 (350)
Q Consensus 26 ~w~~Y~~n~ 34 (350)
.|+++|+++
T Consensus 2 awknfwssl 10 (26)
T 2khf_A 2 AWKNFWSSL 10 (26)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 488898875
No 3
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=16.03 E-value=51 Score=28.43 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=14.9
Q ss_pred ccchHHHHHHHHhhccCCC
Q 018799 5 REDSQKIKRIAAAAYDYDN 23 (350)
Q Consensus 5 ~~~~~~~~~~a~~~yD~~~ 23 (350)
+|+..+.++++++++||+.
T Consensus 96 ~e~~~e~er~~fa~IDW~d 114 (152)
T 4dgw_B 96 HDKLVELCKIQFAAIPWDK 114 (152)
T ss_dssp HHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHhcCCccc
Confidence 3456667889999999986
No 4
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=15.87 E-value=31 Score=24.68 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=18.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhhhcccCCCCcc
Q 018799 38 PHMAARSDVVDHYKRKFYQRYIWDLFKKQDPDLV 71 (350)
Q Consensus 38 p~~~~~~~~~~~~k~k~y~~~i~~~~~~~Dp~~~ 71 (350)
|||++.+.++.|-+- =+..| .|. |-|+||+
T Consensus 2 ~~~a~~~~~Ltk~Ql--~qaLi-hLI-qnD~~Fl 31 (51)
T 2wx3_A 2 PHMADLSIILSKSQL--QDTLI-HLI-KNDSSFL 31 (51)
T ss_dssp CCCCHHHHHHHHHHH--HHHHH-HHH-HHCHHHH
T ss_pred CCcCCCcCccCHHHH--HHHHH-HHH-HcCHHHH
Confidence 799998888776443 23333 333 3488885
No 5
>2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A
Probab=11.77 E-value=1.6e+02 Score=20.81 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.1
Q ss_pred HHhhhccCCCCCC--CChhHHHHHHH
Q 018799 29 DYWSNILIPPHMA--ARSDVVDHYKR 52 (350)
Q Consensus 29 ~Y~~n~~~pp~~~--~~~~~~~~~k~ 52 (350)
-|-.|-|||..+| ..++.+.+++.
T Consensus 24 GYaRN~LiP~g~A~~AT~~n~~~~~~ 49 (52)
T 2hba_A 24 GYANNFLFKQGLAIEATPANLKALEA 49 (52)
T ss_dssp HHHHHTTTTTTSEEECCHHHHHHHHH
T ss_pred CceehhhccCCceeeCCHHHHHHHHH
Confidence 5889999999988 77888888776
No 6
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=11.40 E-value=68 Score=26.35 Aligned_cols=18 Identities=39% Similarity=0.619 Sum_probs=11.1
Q ss_pred HHHhhhhcccCCCCccccc
Q 018799 56 QRYIWDLFKKQDPDLVVES 74 (350)
Q Consensus 56 ~~~i~~~~~~~Dp~~~~~~ 74 (350)
++|| ++.++.+|.+.-..
T Consensus 86 ~~YI-~lv~~l~~~~~~~~ 103 (116)
T 2cqu_A 86 QNYV-DLVSSLSPSLESSS 103 (116)
T ss_dssp HHHH-HHHHHHCSCCCCCC
T ss_pred HHHH-HHHHHHcccccccc
Confidence 4566 66666677765433
No 7
>3dnx_A Uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, protein structure initiative; HET: MSE; 1.94A {Silicibacter pomeroyi}
Probab=10.72 E-value=39 Score=29.35 Aligned_cols=13 Identities=31% Similarity=1.012 Sum_probs=11.2
Q ss_pred cCCCCcchHHHhh
Q 018799 20 DYDNDPRWADYWS 32 (350)
Q Consensus 20 D~~~d~~w~~Y~~ 32 (350)
||-.|.+|++|..
T Consensus 65 DFr~D~KW~~Y~~ 77 (153)
T 3dnx_A 65 DFQADAKWQGYLE 77 (153)
T ss_dssp HHHHTTTGGGGGG
T ss_pred HhhcccchHHHHh
Confidence 7888999999964
No 8
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=9.96 E-value=5.9e+02 Score=19.37 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=24.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcC-ch
Q 018799 255 ACVWVESNSTTLSILTSHAEIGLGFLLIISLLSWQ-RN 291 (350)
Q Consensus 255 ~~~~V~~n~~~~m~lvA~~EI~l~~~LIl~lft~r-rS 291 (350)
+..|++.+-..++...+.+--.++.++++.+++.+ |+
T Consensus 11 ld~~~~~~~~~~I~~G~~iGAs~llliil~lltkkrrs 48 (80)
T 2k9p_A 11 LQGLVNSTVTQAILFGVRSGAAALTLIVVWITSRSRKT 48 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 34567777777777766665555566666677774 55
No 9
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=9.06 E-value=1e+02 Score=24.82 Aligned_cols=44 Identities=25% Similarity=0.592 Sum_probs=25.1
Q ss_pred ccCCCCcchHHHhhhccCCCCCCCChhHHHHHHHHHHHHHhhhhcccCCCCcccccCC
Q 018799 19 YDYDNDPRWADYWSNILIPPHMAARSDVVDHYKRKFYQRYIWDLFKKQDPDLVVESMS 76 (350)
Q Consensus 19 yD~~~d~~w~~Y~~n~~~pp~~~~~~~~~~~~k~k~y~~~i~~~~~~~Dp~~~~~~~s 76 (350)
+|+.+..+|.+ |+.+- +| +++|.+ ++|| ++.++.+|++......
T Consensus 54 ~d~~~raKw~A-W~~l~---gm-s~eeAm--------~~YI-~lv~~l~~~~~~~~~~ 97 (109)
T 2cop_A 54 FDFEGKQKWEA-WKALG---DS-SPSQAM--------QEYI-AVVKKLDPGWNPQIPE 97 (109)
T ss_dssp SCHHHHHHHHH-HHSCT---TC-CHHHHH--------HHHH-HHHHHHCTTCCCCCCC
T ss_pred cCHHHHHHHHH-HHHhc---CC-CHHHHH--------HHHH-HHHHHHhhhhcccchh
Confidence 45555566665 66653 11 334444 4566 6777778888755543
No 10
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=8.37 E-value=2.7e+02 Score=22.18 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=16.7
Q ss_pred cccccchhhhHHHHHHHHHHHHHh
Q 018799 123 SVRWDRQTIQFSVNAWVFVVAMLA 146 (350)
Q Consensus 123 ~~r~d~~t~~F~~~awvl~~a~l~ 146 (350)
..++||++++....+.+.++.+|=
T Consensus 65 GlKV~P~~VLv~sl~Fi~~Vi~Lh 88 (96)
T 2wwb_C 65 GLKVGPVPVLVMSLLFIASVFMLH 88 (96)
T ss_dssp CCCCSSCSHHHHHHHHHHHHHHHS
T ss_pred ceEECCEEehhhHHHHHHHHHHHH
Confidence 468999998887766666544443
Done!