Query 018799
Match_columns 350
No_of_seqs 119 out of 163
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 06:14:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018799.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018799hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hbaa1 d.100.1.1 (A:1-52) Rib 23.7 26 0.0019 23.3 2.8 26 28-53 23-50 (52)
2 d2j01i2 d.100.1.1 (I:1-55) Rib 22.0 29 0.0021 23.3 2.8 25 29-53 24-50 (55)
3 d2hf5a1 a.39.1.5 (A:81-113) Tr 21.7 23 0.0017 21.4 2.0 16 9-25 3-18 (33)
4 d2obha1 a.39.1.5 (A:26-166) Ca 16.5 91 0.0067 22.2 5.0 31 6-37 3-38 (141)
5 d1fw4a_ a.39.1.5 (A:) Calmodul 15.2 32 0.0023 22.5 1.7 28 9-37 3-35 (65)
6 d2v8qa1 d.129.6.2 (A:396-548) 15.2 19 0.0014 29.3 0.5 19 123-141 130-148 (153)
7 d2gycf2 d.100.1.1 (F:1-58) Rib 10.8 60 0.0044 21.7 2.0 25 29-53 24-50 (58)
8 d1oqpa_ a.39.1.5 (A:) Caltract 10.7 72 0.0052 21.2 2.5 36 3-39 3-43 (77)
9 d1fi5a_ a.39.1.5 (A:) Troponin 9.6 72 0.0052 21.6 2.2 31 7-38 13-48 (81)
10 d1hbxg_ a.4.5.21 (G:) Serum re 9.4 75 0.0055 25.5 2.4 18 42-59 53-70 (155)
No 1
>d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=23.70 E-value=26 Score=23.26 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.3
Q ss_pred HHHhhhccCCCCCC--CChhHHHHHHHH
Q 018799 28 ADYWSNILIPPHMA--ARSDVVDHYKRK 53 (350)
Q Consensus 28 ~~Y~~n~~~pp~~~--~~~~~~~~~k~k 53 (350)
..|..|-|||..+| +.++.+.+++.+
T Consensus 23 ~GyarN~LiP~g~A~~at~~n~~~~~~~ 50 (52)
T d2hbaa1 23 DGYANNFLFKQGLAIEATPANLKALEAQ 50 (52)
T ss_dssp HHHHHHTTTTTTSEEECCHHHHHHHHHH
T ss_pred ccchhHhhccCCchhhCCHHHHHHHHHh
Confidence 36899999999988 778888888763
No 2
>d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]}
Probab=22.03 E-value=29 Score=23.30 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=20.9
Q ss_pred HHhhhccCCCCCC--CChhHHHHHHHH
Q 018799 29 DYWSNILIPPHMA--ARSDVVDHYKRK 53 (350)
Q Consensus 29 ~Y~~n~~~pp~~~--~~~~~~~~~k~k 53 (350)
-|..|-|||..+| ..++.+.+++.|
T Consensus 24 GyaRN~LiP~~~A~~at~~nl~~~~~~ 50 (55)
T d2j01i2 24 GYARNYLLPRGLAVLATESNLKALEAR 50 (55)
T ss_dssp HHHHHTTTTTTSEEECCHHHHHHHHHH
T ss_pred hhHHHHhcccCchhhcCHHHHHHHHHH
Confidence 5899999999988 788888888653
No 3
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=21.67 E-value=23 Score=21.36 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=12.4
Q ss_pred HHHHHHHHhhccCCCCc
Q 018799 9 QKIKRIAAAAYDYDNDP 25 (350)
Q Consensus 9 ~~~~~~a~~~yD~~~d~ 25 (350)
+++|+ ||.-||=|+|-
T Consensus 3 eel~e-AF~~FDkDg~G 18 (33)
T d2hf5a1 3 EEIRE-AFRVFDKDGNG 18 (33)
T ss_dssp HHHHH-HHHHHSSSCCS
T ss_pred HHHHH-HHHHhCCCCCC
Confidence 35555 99999999884
No 4
>d2obha1 a.39.1.5 (A:26-166) Calmodulin {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.52 E-value=91 Score=22.19 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=22.1
Q ss_pred cchHHHHHHHHhhccCCCCcc-----hHHHhhhccCC
Q 018799 6 EDSQKIKRIAAAAYDYDNDPR-----WADYWSNILIP 37 (350)
Q Consensus 6 ~~~~~~~~~a~~~yD~~~d~~-----w~~Y~~n~~~p 37 (350)
|..|++|+ ||..||-++|-. .+..+.+.-.+
T Consensus 3 ~~~~elk~-~F~~~D~~~~G~Is~~e~~~~l~~~~~~ 38 (141)
T d2obha1 3 EQKQEIRE-AFDLFDADGTGTIDVKELKVAMRALGFE 38 (141)
T ss_dssp HHHHHHHH-HHHTTCTTCCSEEEGGGHHHHHHHTTCC
T ss_pred HHHHHHHH-HHHHHcCCCCCeEeHHHHHHHHHhcCCc
Confidence 34567766 999999999843 77777766433
No 5
>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.24 E-value=32 Score=22.55 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=19.0
Q ss_pred HHHHHHHHhhccCCCCcc-----hHHHhhhccCC
Q 018799 9 QKIKRIAAAAYDYDNDPR-----WADYWSNILIP 37 (350)
Q Consensus 9 ~~~~~~a~~~yD~~~d~~-----w~~Y~~n~~~p 37 (350)
+++|+ ||..||-+|+-. -+..+..+=.+
T Consensus 3 eel~~-aF~~fD~d~~G~I~~~el~~~l~~lg~~ 35 (65)
T d1fw4a_ 3 EEIRE-AFRVFDKDGNGYISAAELRHVMTNLGEK 35 (65)
T ss_dssp HHHHH-HHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred HHHHH-HHHHHcCCCCCcCCHHHHHHHHHHhCCC
Confidence 56765 999999999853 45555555444
No 6
>d2v8qa1 d.129.6.2 (A:396-548) 5'-AMP-activated protein kinase catalytic subunit alpha-1, AMPK1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=15.18 E-value=19 Score=29.25 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=14.2
Q ss_pred cccccchhhhHHHHHHHHH
Q 018799 123 SVRWDRQTIQFSVNAWVFV 141 (350)
Q Consensus 123 ~~r~d~~t~~F~~~awvl~ 141 (350)
+++--..|.-|+-.|--|+
T Consensus 130 ~~~~~~hTmeFFEmCa~LI 148 (153)
T d2v8qa1 130 APRPGSHTIEFFEMCANLI 148 (153)
T ss_dssp CCCSCCHHHHHHHHHHHHH
T ss_pred CCccCchhHHHHHHHHHHH
Confidence 3455668899999888775
No 7
>d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {Escherichia coli [TaxId: 562]}
Probab=10.77 E-value=60 Score=21.72 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=19.8
Q ss_pred HHhhhccCCCCCC--CChhHHHHHHHH
Q 018799 29 DYWSNILIPPHMA--ARSDVVDHYKRK 53 (350)
Q Consensus 29 ~Y~~n~~~pp~~~--~~~~~~~~~k~k 53 (350)
.|-.|-|||..+| ..++.+.+++.+
T Consensus 24 GyaRNyLiP~glA~~at~~n~~~~~~~ 50 (58)
T d2gycf2 24 GYARNFLVPQGKAVPATKKNIEFFEAR 50 (58)
T ss_dssp TTTTTTTTTTTSEEECCCHHHHHHHHH
T ss_pred chhHHHhccCCceecCCHHHHHHHHHH
Confidence 4788999999988 677777777663
No 8
>d1oqpa_ a.39.1.5 (A:) Caltractin (centrin 2) {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}
Probab=10.66 E-value=72 Score=21.21 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=25.6
Q ss_pred CCccchHHHHHHHHhhccCCCC-----cchHHHhhhccCCCC
Q 018799 3 EEREDSQKIKRIAAAAYDYDND-----PRWADYWSNILIPPH 39 (350)
Q Consensus 3 ~~~~~~~~~~~~a~~~yD~~~d-----~~w~~Y~~n~~~pp~ 39 (350)
+|++..+++++ ||..||=++| ......+.++=.+..
T Consensus 3 ge~d~~e~l~~-~F~~~D~d~~G~I~~~el~~~l~~~g~~~~ 43 (77)
T d1oqpa_ 3 GERDSREEILK-AFRLFDDDNSGTITIKDLRRVAKELGENLT 43 (77)
T ss_dssp TTSSHHHHHHH-HHHHHCTTCSSSEEHHHHHHHHHHHTCCCC
T ss_pred CCccHHHHHHH-HHHHHcCCCCCEechHHHHHHHHHhCCCCC
Confidence 34455566765 9999999988 457888888765533
No 9
>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac isoform [TaxId: 9031]}
Probab=9.62 E-value=72 Score=21.65 Aligned_cols=31 Identities=6% Similarity=-0.043 Sum_probs=20.8
Q ss_pred chHHHHHHHHhhccCCCCcc-----hHHHhhhccCCC
Q 018799 7 DSQKIKRIAAAAYDYDNDPR-----WADYWSNILIPP 38 (350)
Q Consensus 7 ~~~~~~~~a~~~yD~~~d~~-----w~~Y~~n~~~pp 38 (350)
..+++|+ ||..||-++|-. -...+.++=.++
T Consensus 13 ~ee~l~~-~F~~~D~d~~G~I~~~el~~~l~~~g~~~ 48 (81)
T d1fi5a_ 13 TEEELSD-LFRMFDKNADGYIDLEELKIMLQATGETI 48 (81)
T ss_dssp CHHHHHH-HHHHHCSSCSSEECHHHHHHHHHTSSSCC
T ss_pred CHHHHHH-HHHHHcCCCCCcccHHHHHHHHHhcCCCC
Confidence 3456665 999999999864 345565554443
No 10
>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a, SAP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.40 E-value=75 Score=25.47 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.5
Q ss_pred CChhHHHHHHHHHHHHHh
Q 018799 42 ARSDVVDHYKRKFYQRYI 59 (350)
Q Consensus 42 ~~~~~~~~~k~k~y~~~i 59 (350)
+.=|.|.+=-|.||++.|
T Consensus 53 M~YeklSRaLRyYY~k~i 70 (155)
T d1hbxg_ 53 MNYDKLSRALRYYYVKNI 70 (155)
T ss_dssp CCHHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHHHhcCC
Confidence 556888888999999999
Done!