BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018800
(350 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FJJ3|SRO5_ARATH Probable inactive poly [ADP-ribose] polymerase SRO5 OS=Arabidopsis
thaliana GN=SRO5 PE=1 SV=1
Length = 309
Score = 270 bits (691), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 142/280 (50%), Positives = 197/280 (70%), Gaps = 16/280 (5%)
Query: 73 GLISLQEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVA 132
GL+ L EGDK +DLI SGLG Q +I+S+ RN F V +AK+++FQ+F +AV
Sbjct: 41 GLMELLEGDKAHDLIYRNCKSGLG---DQCQILSVLRNGFRNVGSRAKLKTFQVFQEAVQ 97
Query: 133 QKCGGD--ANVKYAWYAGTKDEICKIIEHGFGYCGKP-SNNGMYGCGVYLSPDDSPLECV 189
K GGD A VKY W + +K E+ I E+GF +P N+G +G G+YLSPD+SPL+C+
Sbjct: 98 MKHGGDGGAKVKYGWCSVSKHELKTIFEYGFS---EPLRNDGSFGRGLYLSPDNSPLDCL 154
Query: 190 KNSAIDRE-GMRYLLLCRVILGKQEVVHPGSDQYHPSTGEFESGVDNLQVPKKYILWSTN 248
K+SA + E GMR+LLLCRV+LGK E+V GS + PS+ EF+SGVD+L KKYI+WST+
Sbjct: 155 KDSASESEDGMRFLLLCRVLLGKSEIVPQGSTRSCPSSPEFDSGVDDLVSTKKYIVWSTH 214
Query: 249 MNTHILPEYIISLKAPSSMKGFGRVQDSLRVPTSPWMPFPILISALSKFLPPPTVALMSK 308
MNTH+LPE+++ +KAP ++ R LR SPWM FP+LI ALSKFLPP + ++ K
Sbjct: 215 MNTHVLPEFLVCIKAPFNLT---RSPKRLR---SPWMAFPVLIKALSKFLPPSQILVIQK 268
Query: 309 YYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAKVH 348
+Y+D + ++++R ELIQRVR I GD+LL+ +IK+ KV
Sbjct: 269 HYKDQQNRRITRSELIQRVRSITGDKLLVHIIKACGHKVQ 308
>sp|Q9ZUD9|SRO2_ARATH Probable inactive poly [ADP-ribose] polymerase SRO2 OS=Arabidopsis
thaliana GN=SRO2 PE=1 SV=1
Length = 323
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/280 (44%), Positives = 183/280 (65%), Gaps = 13/280 (4%)
Query: 74 LISLQEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFS-GVMGQAKIQSFQIFAKAVA 132
LI L EG+ +D+I L+SG+GV+ + IV+I +NS G+ +AK +F+IF AVA
Sbjct: 45 LILLGEGNPEHDVIKTCLLSGMGVVSSDTTIVTISKNSSERGITTRAKFLAFRIFTDAVA 104
Query: 133 QKCGGDANVKYAWYAGTKDEICKIIEHGFGY--CGKPSNNG-MYGCGVYLSPDDSPLECV 189
+K GGDANVKY WYAG++DEI +II +GF GK N+G +G G++L P L
Sbjct: 105 RKHGGDANVKYGWYAGSRDEIQRIISYGFSNRDVGKFENDGGSHGIGIHLVPSKCSLLAA 164
Query: 190 KNSAIDREGMRYLLLCRVILGKQEVVHPGSDQYHPSTGEFESGVDNLQVPKKYILWSTNM 249
+ D EG+RYLLLCRVILGK E++ GS Q +PS+ EF+SGVD+L P+ Y++WS NM
Sbjct: 165 SATEQDEEGLRYLLLCRVILGKPEIIISGSKQSYPSSAEFDSGVDDLHNPRNYVIWSCNM 224
Query: 250 NTHILPEYIISLKAPS---SMKGFGRVQDSLRVPTSPWMPFPILISALSKFLPPPTVALM 306
N+ ILP YI+S ++P S GF P+SPW+ F L+S LS + P + L+
Sbjct: 225 NSCILPSYIVSFRSPRLRVSRGGFA------SRPSSPWVSFASLMSMLSTSMDPSRMNLI 278
Query: 307 SKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAK 346
+ Y D + +K+ R +L++++R++AGD LL +IK+++ +
Sbjct: 279 IRTYDDFRKRKIRRDQLVRKMREVAGDNLLAEIIKNHKNR 318
>sp|Q9STU1|SRO4_ARATH Probable inactive poly [ADP-ribose] polymerase SRO4 OS=Arabidopsis
thaliana GN=SRO4 PE=2 SV=2
Length = 316
Score = 228 bits (582), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 134/329 (40%), Positives = 199/329 (60%), Gaps = 40/329 (12%)
Query: 34 FNSDVDTTHYDEDESSSTV-SDCESSVSGPVVHPPTPFSNGLISLQEGDKVYDLISGRLI 92
N + +T+ E S+ + SDC+ H GL L + DKVY+LI
Sbjct: 11 INEEQGSTNSSESRSNEELFSDCDQQ------HSSIANEFGLTELPKDDKVYELIYRHCQ 64
Query: 93 SGLGV-LGAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQK---CGGD-------ANV 141
S L L Q +IVSI +N F +GQAK+++FQI+A++VA+K C G+ A V
Sbjct: 65 SKLTSHLSNQFEIVSILKNGFQTPLGQAKLKAFQIYAESVAKKSGSCCGNKAAVAEAARV 124
Query: 142 KYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKN--SAIDREGM 199
KY K+E+ I+ +GF SNN + LSPD++PL+C+ + S+ + +G+
Sbjct: 125 KYGCCGVEKEELKAILMYGF------SNNALC-----LSPDNAPLQCMIDPSSSCNEDGI 173
Query: 200 RYLLLCRVILGKQEVVHPGSDQYHPSTGEFESGVDNLQVPKKYILWSTNMNTHILPEYII 259
+LL R+I+GK EVV S Y PS+ EF+SGVD+L P KYI+WST+MNTH+LPE+++
Sbjct: 174 SFLLFSRIIMGKSEVVCSTSQSY-PSSMEFDSGVDSLTSPNKYIIWSTHMNTHVLPEFVV 232
Query: 260 SLKAPSSMKGFGRVQDSLRVPTSPWMPFPILISALSKFLPPPTVALMSKYYRDHKGKKVS 319
+K PS +K + P SPW+ FP+LI+++SKFL + L+ K+Y++H+ +++S
Sbjct: 233 CIKTPSILKR--------KNPKSPWISFPVLINSISKFLNQSQIRLIHKHYKEHQDRRIS 284
Query: 320 RHELIQRVRQIAGDQLLIAVIKSYRAKVH 348
R ELIQR+R I GD LL+ +IKS KVH
Sbjct: 285 RCELIQRLRSITGDSLLVQIIKSVGQKVH 313
>sp|O64592|SRO3_ARATH Probable inactive poly [ADP-ribose] polymerase SRO3 OS=Arabidopsis
thaliana GN=SRO3 PE=1 SV=2
Length = 305
Score = 194 bits (494), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 178/309 (57%), Gaps = 21/309 (6%)
Query: 45 EDESSSTVSDCESSVSGPVVHP-----PTPFSNGLISLQEGDKVYDLISGRLISGLGVLG 99
ED+ S T D +G +++P P + I L+E ++LI +SG+G
Sbjct: 8 EDQESVTNLD-----NGEIINPISDNAPNFSGDATILLREATFEHNLIKNCFLSGMGSFA 62
Query: 100 AQAKIVSIHRN-SFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGTKDEICKIIE 158
+ IV++ + + + +AK F++F +A+ +K G AN++Y WY+G+K+EI ++I
Sbjct: 63 TETTIVTVRKILTQRLITTKAKFAVFKLFTEAMKRKNNGYANIRYGWYSGSKEEIDRVIT 122
Query: 159 HGFG--YCGKPSNN-GMYGCGVYLSPDDSPLECVKNSAIDREGMRYLLLCRVILGKQEVV 215
+GF K N+ G +G G++L L D EG++ +LLCRVILGK E +
Sbjct: 123 YGFSNREIKKVENDVGSHGVGIHLVHHRYSLAAALVGEGDEEGIKNILLCRVILGKPEQI 182
Query: 216 HPGSDQYHPSTGEFESGVDNLQVPKKYILWSTNMNTHILPEYIISLKAPSSMKGFGRVQD 275
GS Q +PS+ +F+SGVDNL+ P+KY++WS NMN++ILP YI+S K+ GR +
Sbjct: 183 VTGSKQSYPSSNQFDSGVDNLENPRKYVIWSCNMNSYILPTYIVSFKSHLLRGLIGRAR- 241
Query: 276 SLRVPTSPWMPFPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQL 335
SP + F +L+S LSK L + L+ Y D + +K+ R +L++++R++ GD L
Sbjct: 242 ------SPCVSFSVLMSILSKSLDAARMNLILTSYDDFRKRKLRREQLVRKIREVVGDNL 295
Query: 336 LIAVIKSYR 344
L ++K+ R
Sbjct: 296 LFKILKNQR 304
>sp|Q8RY59|RCD1_ARATH Inactive poly [ADP-ribose] polymerase RCD1 OS=Arabidopsis thaliana
GN=RCD1 PE=1 SV=1
Length = 589
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/338 (29%), Positives = 164/338 (48%), Gaps = 43/338 (12%)
Query: 42 HYDEDESSSTVSDCESSVSGPVVHPPTPFSNGLISLQEG-DKVYDLISGRLISGLGVLGA 100
HYDE S E++VS S ++ E DK D + G LG
Sbjct: 234 HYDEATEDSCSRKLEAAVSKWDETDAIVVSGAKLTGSEVLDK--DAVKKMFAVGTASLG- 290
Query: 101 QAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGTKDEICKIIEHG 160
++ + R FS + +A++ FQ + + +K GDANV+YAW ++ + ++ G
Sbjct: 291 HVPVLDVGR--FSSEIAEARLALFQKQVE-ITKKHRGDANVRYAWLPAKREVLSAVMMQG 347
Query: 161 FGYCGKPSNNGMYGCGVYLSPDDSPLECVKNSAIDREGMRYLLLCRVILGKQEVVHPGSD 220
G G +YG G++L+ D P + +D G+RY++LCRVI+G E++
Sbjct: 348 LGVGGAFIRKSIYGVGIHLTAADCPYFSARYCDVDENGVRYMVLCRVIMGNMELLRGDKA 407
Query: 221 QYHPSTGEFESGVDNLQVPKKYILWSTNMNTHILPEYI---------------------- 258
Q+ E+++GVD+++ PK YI+W+ NMNTHI PE++
Sbjct: 408 QFFSGGEEYDNGVDDIESPKNYIVWNINMNTHIFPEFVVRFKLSNLPNAEGNLIAKRDNS 467
Query: 259 -ISLKAPSSM----------KGFG---RVQDSLRVPTSPWMPFPILISALSKFLPPPTVA 304
++L+ P + +G G V S P SPWMPFP L +A+S + +
Sbjct: 468 GVTLEGPKDLPPQLESNQGARGSGSANSVGSSTTRPKSPWMPFPTLFAAISHKVAENDML 527
Query: 305 LMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKS 342
L++ Y+ + KK++R E ++++R I GD LL + I +
Sbjct: 528 LINADYQQLRDKKMTRAEFVRKLRVIVGDDLLRSTITT 565
>sp|O82289|SRO1_ARATH Probable inactive poly [ADP-ribose] polymerase SRO1 OS=Arabidopsis
thaliana GN=SRO1 PE=1 SV=2
Length = 568
Score = 132 bits (332), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 145/302 (48%), Gaps = 47/302 (15%)
Query: 78 QEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGG 137
+E DK D + G LG + S+ FS + +A++ FQ A + +K G
Sbjct: 267 EELDK--DAVKQMFALGAATLG---HVESLDVYQFSSEIAKARLSLFQKQAD-ITKKHRG 320
Query: 138 DANVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKNSAIDRE 197
DAN++YAW K+ + ++ HG G G MYG GV+ + + P + ID
Sbjct: 321 DANIRYAWVPAKKEVLSAVMMHGLGVGGAFIKKSMYGVGVHAA--NCPYFSARYCDIDDN 378
Query: 198 GMRYLLLCRVILGKQEVVHPGSDQYHPSTGEFESGVDNLQVPKKYILWSTNMNTHILPEY 257
G+R+++LCRVI+G E + + QY E+++GVD+++ PK Y++W+ NMNTHI PE+
Sbjct: 379 GVRHMVLCRVIMGNMEPLRGDNTQYFTGGEEYDNGVDDVESPKHYLIWNMNMNTHIYPEF 438
Query: 258 IISLK----------APSSM-------------KGF-----GRVQDSLRVPTSPW----- 284
++S K P++ KG GRV +
Sbjct: 439 VVSFKLSIPNAEGNILPTTQSRHESSGLTLEGPKGSPSNEPGRVSNGGSGSEKNSSSSRR 498
Query: 285 -----MPFPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAG-DQLLIA 338
MPFP+L A+S + + L+ Y++ + KKVSR E + + I G D LLI+
Sbjct: 499 PRSPIMPFPLLFKAISSKIARKDMDLIIAGYQELREKKVSRKEFYKTLSMIVGDDDLLIS 558
Query: 339 VI 340
I
Sbjct: 559 TI 560
>sp|Q460N3|PAR15_HUMAN Poly [ADP-ribose] polymerase 15 OS=Homo sapiens GN=PARP15 PE=1 SV=1
Length = 656
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 64/147 (43%), Gaps = 8/147 (5%)
Query: 122 QSFQIFAKAVAQKCGGDANVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSP 181
QS+Q+ + + K N + ++ D + + +HGF N YG G Y +
Sbjct: 513 QSYQVKKRQMDIKNDHKNNERLLFHGTDADSVPYVNQHGFNRSCAGKNAVSYGKGTYFAV 572
Query: 182 DDSPLECVKNSAIDREGMRYLLLCRVIL-----GKQEVVHPGSDQYHPSTGEFESGVDNL 236
D S S D G +++ + RV+ G+ +V P H T F+S +N
Sbjct: 573 DASYSAKDTYSKPDSNGRKHMYVVRVLTGVFTKGRAGLVTPPPKNPHNPTDLFDSVTNNT 632
Query: 237 QVPKKYILWSTNMNTHILPEYIISLKA 263
+ PK ++++ N PEY+I+ A
Sbjct: 633 RSPKLFVVFFDN---QAYPEYLITFTA 656
>sp|Q2EMV9|PAR14_MOUSE Poly [ADP-ribose] polymerase 14 OS=Mus musculus GN=Parp14 PE=1 SV=3
Length = 1817
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 84/196 (42%), Gaps = 21/196 (10%)
Query: 74 LISLQEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQ 133
L++LQ D Y++++ S + I I R + A + +Q + K++ +
Sbjct: 1635 LVNLQTSDPEYNMVA----SAFRQTCSNFFIEKIER-----IQNPALWRRYQAYKKSMDE 1685
Query: 134 KCGGDANVKYAWYAGTKDEICKIIEHGFG--YCGKPSNNGMYGCGVYLSPDDSPLECVKN 191
K G N K+ ++ + ++ +GF Y GK N YG G Y + S C
Sbjct: 1686 KNGNVRNEKHLFHGTEASSLPQLNSNGFNRSYAGK--NATAYGKGTYFAVKASYSACDTY 1743
Query: 192 SAIDREGMRYLLLCRVIL-----GKQEVVHPGSDQYHPSTGEFESGVDNLQVPKKYILWS 246
S D G +Y+ RV+ G ++ P S + +++ DN + P ++++
Sbjct: 1744 SRPDTNGRKYMYYVRVLTGNYTNGNASLIVPPSRDPQNAADLYDTVTDNDKNPSIFVVFY 1803
Query: 247 TNMNTHILPEYIISLK 262
N PEY+I+ +
Sbjct: 1804 DN---QTYPEYLITFR 1816
>sp|P48839|AGAA_VIBS7 Beta-agarase A OS=Vibrio sp. (strain JT0107) GN=agaA PE=3 SV=1
Length = 995
Score = 38.1 bits (87), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 141 VKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSP-LECVKNSAIDREGM 199
V YA +K+E+ K+ + G+ +N MYG +PD SP +CV +
Sbjct: 408 VTYAGKVASKEELAKLSDPEMAALGELTNRNMYGG----NPDSSPATDCVLATPASFNA- 462
Query: 200 RYLLLCRVILGKQEVVHPGSDQYHPSTGEFESGVDNLQVPKKYIL 244
C+ G ++V P + + F +GVDN+++ Y +
Sbjct: 463 -----CKDADGNWQLVDPAGNAF------FSTGVDNIRLQDTYTM 496
>sp|Q9TXQ1|PME5_CAEEL Poly(ADP-ribose) polymerase pme-5 OS=Caenorhabditis elegans GN=pme-5
PE=2 SV=1
Length = 2276
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 137 GDANVKYAWYAGTKDEICKIIEHGFGYCGKPS---NNGMYGCGVYLSPDDSPLECVKNSA 193
D N K+ W+ + I+++GF PS N ++G G+YL+ DS +
Sbjct: 2114 NDDNQKFLWHGTKATNLMSILKNGF-LIDPPSACKNGNLFGSGIYLA--DSFEKSTHYCQ 2170
Query: 194 IDREGMRYLLLCRVILGK 211
G+ Y+L+C+ LGK
Sbjct: 2171 PSAGGINYMLVCQTALGK 2188
>sp|Q53GL7|PAR10_HUMAN Poly [ADP-ribose] polymerase 10 OS=Homo sapiens GN=PARP10 PE=1 SV=2
Length = 1025
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 14/147 (9%)
Query: 122 QSFQIFAKAVAQKCGGDANVKYAWYAGTKDEICKIIEHGFG--YCGKPSNNGMYGCGVYL 179
Q ++++ + + Q+C + ++ T + I HGF +CG+ N +YG GVY
Sbjct: 863 QQYELYRERLLQRCERRPVEQVLYHGTTAPAVPDICAHGFNRSFCGR--NATVYGKGVYF 920
Query: 180 SPDDSPLECVKNSAIDREGMRYLLLCRVILGKQEVVHPGSDQYHPSTG------EFESGV 233
+ S + S + +G + + + RV+ G G + P G ++S V
Sbjct: 921 ARRASLSVQDRYSPPNADGHKAVFVARVLTGDYGQGRRGL-RAPPLRGPGHVLLRYDSAV 979
Query: 234 DNLQVPKKYILWSTNMNTHILPEYIIS 260
D + P ++++ +T LP ++I+
Sbjct: 980 DCICQPSIFVIFH---DTQALPTHLIT 1003
>sp|Q5UQC3|PLOD_MIMIV Procollagen lysyl hydroxylase and glycosyltransferase
OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L230 PE=1
SV=1
Length = 895
Score = 35.8 bits (81), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 165 GKPSNNGMYGCGV-YLSPDDSPLECVKNSAIDREGMRYLLLCRVILGKQEVVHPGS--DQ 221
GKP NG GC + + S ++CV+N +D++ CR+++ + +VV + ++
Sbjct: 66 GKPMTNGEVGCALSHWSVWKDVVDCVENGTLDKD-------CRILVLEDDVVFLDNFMER 118
Query: 222 YHPSTGEFESGVDNLQVPKKYI--LWSTNMNTHIL 254
Y T E D L + +K + T ++THI+
Sbjct: 119 YQTYTSEITYNCDLLYLHRKPLNPYTETKISTHIV 153
>sp|Q7Z2W4|ZCCHV_HUMAN Zinc finger CCCH-type antiviral protein 1 OS=Homo sapiens
GN=ZC3HAV1 PE=1 SV=3
Length = 902
Score = 35.4 bits (80), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/140 (21%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Query: 120 KIQSFQIFAKAVAQKCGGDANVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYL 179
KI++ ++ K +K K +YA ++ + I + F ++ YG G+Y
Sbjct: 761 KIENSELLDKFTWKKSQMKEEGKLLFYATSRAYVESICSNNFDSFLHETHENKYGKGIYF 820
Query: 180 SPDDSPLECVKNSAIDREGMRYLLLCRVILGKQEVVHPGSDQYHPSTGEFESGVDNLQVP 239
+ D + KN D + + + + +V++GK G+ Y +F+S VD P
Sbjct: 821 AKD--AIYSHKNCPYDAKNV-VMFVAQVLVGK---FTEGNITYTSPPPQFDSCVDTRSNP 874
Query: 240 KKYILWSTNMNTHILPEYII 259
++++ + + P+Y+I
Sbjct: 875 SVFVIFQKD---QVYPQYVI 891
>sp|Q460N5|PAR14_HUMAN Poly [ADP-ribose] polymerase 14 OS=Homo sapiens GN=PARP14 PE=1 SV=3
Length = 1801
Score = 32.7 bits (73), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 60/147 (40%), Gaps = 12/147 (8%)
Query: 123 SFQIFAKAVAQKCGGDANVKYAWYAGTKDEICKIIEHGFG--YCGKPSNNGMYGCGVYLS 180
S+Q K + K G N K ++ + + +GF Y GK N YG G Y +
Sbjct: 1659 SYQAKKKTMDAKNGQTMNEKQLFHGTDAGSVPHVNRNGFNRSYAGK--NAVAYGKGTYFA 1716
Query: 181 PDDSPLECVKNSAIDREGMRYLLLCRVIL-----GKQEVVHPGSDQYHPSTGEFESGVDN 235
+ + S D G +++ RV+ G ++ P S T +++ DN
Sbjct: 1717 VNANYSANDTYSRPDANGRKHVYYVRVLTGIYTHGNHSLIVPPSKNPQNPTDLYDTVTDN 1776
Query: 236 LQVPKKYILWSTNMNTHILPEYIISLK 262
+ P ++ + + PEY+I+ +
Sbjct: 1777 VHHPSLFVAF---YDYQAYPEYLITFR 1800
>sp|Q87LZ2|GREA_VIBPA Transcription elongation factor GreA OS=Vibrio parahaemolyticus
serotype O3:K6 (strain RIMD 2210633) GN=greA PE=3 SV=1
Length = 157
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 37 DVDTTHYDEDESSSTVSDCESSVSGPVVHPPTPFSNGLISLQEGDKV 83
DVDT DE+++ V D E+ + + +P + GLI EGD+V
Sbjct: 95 DVDT---DEEKTYQIVGDDEADIKAGRISVSSPIARGLIGKMEGDEV 138
>sp|Q5HQ30|MUTS2_STAEQ MutS2 protein OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=mutS2 PE=3 SV=1
Length = 782
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 311 RDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAK 346
RDHKG +V HELI + +Q+ DQ + IK + K
Sbjct: 599 RDHKGAEVKEHELIDKKKQL-DDQYEVKSIKQHVQK 633
>sp|Q94I55|OST3_ORYSJ Probable dolichyl-diphosphooligosaccharide--protein
glycosyltransferase subunit 3 OS=Oryza sativa subsp.
japonica GN=OST3 PE=2 SV=1
Length = 336
Score = 31.6 bits (70), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 5 NEITHGFSILASNNLTKHTLVSPSKQTISFNSDVDTTHYDE--DESSSTVSDCESSVSGP 62
+E H F+ N+L LV P ++ + +D +H+ D + V GP
Sbjct: 114 SESQHSFAQFGVNSLPHVRLVRPEHTRLAGSEQMDQSHFSRLADSMAEFVESRTGLEVGP 173
Query: 63 VVHPPTPFSNGLISL 77
+V PP N +I L
Sbjct: 174 IVRPPLVSRNQMILL 188
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,601,407
Number of Sequences: 539616
Number of extensions: 6040958
Number of successful extensions: 13659
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 13629
Number of HSP's gapped (non-prelim): 22
length of query: 350
length of database: 191,569,459
effective HSP length: 118
effective length of query: 232
effective length of database: 127,894,771
effective search space: 29671586872
effective search space used: 29671586872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)