Query 018800
Match_columns 350
No_of_seqs 190 out of 833
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:08:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01438 tankyrase_like Tankyra 100.0 5.5E-38 1.2E-42 288.9 19.1 180 71-264 15-221 (223)
2 PF00644 PARP: Poly(ADP-ribose 100.0 1.2E-35 2.5E-40 271.8 14.9 173 72-263 3-206 (206)
3 cd01439 TCCD_inducible_PARP_li 100.0 1.6E-35 3.4E-40 250.7 10.0 114 143-261 1-121 (121)
4 PF12174 RST: RCD1-SRO-TAF4 (R 100.0 2.6E-30 5.6E-35 197.9 8.4 69 278-346 2-70 (70)
5 cd01437 parp_like Poly(ADP-rib 100.0 2.4E-29 5.1E-34 246.9 14.9 173 72-262 138-347 (347)
6 PLN03124 poly [ADP-ribose] pol 99.9 6.1E-23 1.3E-27 213.6 15.3 174 72-264 428-639 (643)
7 PLN03123 poly [ADP-ribose] pol 99.9 3E-22 6.5E-27 217.2 13.8 175 72-264 767-978 (981)
8 PLN03122 Poly [ADP-ribose] pol 99.9 1.8E-21 4E-26 207.4 12.5 175 71-264 590-805 (815)
9 cd01341 ADP_ribosyl ADP_ribosy 99.8 7.5E-19 1.6E-23 151.7 6.5 111 143-257 1-137 (137)
10 KOG1037 NAD+ ADP-ribosyltransf 98.6 1.5E-08 3.2E-13 105.2 1.2 147 72-233 309-460 (531)
11 KOG0034 Ca2+/calmodulin-depend 89.9 0.68 1.5E-05 42.3 5.6 58 285-342 84-151 (187)
12 PF12767 SAGA-Tad1: Transcript 88.6 1.6 3.6E-05 41.3 7.4 64 281-344 5-75 (252)
13 PF12509 DUF3715: Protein of u 85.5 2.9 6.2E-05 37.4 6.7 115 116-234 2-125 (165)
14 PF13833 EF-hand_8: EF-hand do 78.5 3.1 6.8E-05 29.1 3.6 45 285-329 5-53 (54)
15 PF15633 Tox-ART-HYD1: HYD1 si 72.6 2.4 5.2E-05 34.7 1.8 39 144-183 1-40 (96)
16 PF02671 PAH: Paired amphipath 71.9 9.9 0.00022 26.3 4.6 33 301-333 2-34 (47)
17 PF13151 DUF3990: Protein of u 68.5 2.4 5.2E-05 37.4 1.1 26 304-329 108-133 (154)
18 KOG4177 Ankyrin [Cell wall/mem 64.7 1.5 3.1E-05 50.0 -1.3 99 104-212 1000-1112(1143)
19 PF08349 DUF1722: Protein of u 56.5 29 0.00062 28.9 5.4 47 286-332 54-100 (117)
20 PRK00819 RNA 2'-phosphotransfe 55.0 9.4 0.0002 34.6 2.4 35 140-182 93-127 (179)
21 PHA01748 hypothetical protein 54.8 32 0.0007 25.4 4.8 49 295-346 6-55 (60)
22 PF09851 SHOCT: Short C-termin 54.1 32 0.0007 22.0 4.1 29 304-332 3-31 (31)
23 PF13405 EF-hand_6: EF-hand do 54.0 12 0.00026 23.4 2.1 28 302-329 1-28 (31)
24 PF01885 PTS_2-RNA: RNA 2'-pho 52.6 11 0.00023 34.3 2.4 35 140-182 104-138 (186)
25 smart00862 Trans_reg_C Transcr 50.5 25 0.00054 26.0 3.8 50 298-348 6-59 (78)
26 PTZ00184 calmodulin; Provision 50.1 40 0.00087 27.7 5.4 62 282-343 61-129 (149)
27 smart00027 EH Eps15 homology d 49.2 34 0.00074 27.0 4.6 49 282-330 24-73 (96)
28 cd05031 S-100A10_like S-100A10 48.5 49 0.0011 26.0 5.4 31 303-333 7-42 (94)
29 cd00383 trans_reg_C Effector d 47.9 21 0.00046 27.5 3.2 50 298-348 24-76 (95)
30 PF09454 Vps23_core: Vps23 cor 47.6 73 0.0016 24.0 5.8 38 303-340 25-62 (65)
31 COG1859 KptA RNA:NAD 2'-phosph 45.5 16 0.00035 34.0 2.4 26 138-163 117-142 (211)
32 cd01436 Dipth_tox_like Mono-AD 44.4 23 0.0005 30.3 2.9 50 144-197 2-54 (147)
33 PF00036 EF-hand_1: EF hand; 44.4 14 0.00031 23.1 1.3 27 303-329 2-28 (29)
34 cd00051 EFh EF-hand, calcium b 42.7 49 0.0011 22.0 4.1 44 284-327 16-62 (63)
35 cd00213 S-100 S-100: S-100 dom 42.3 87 0.0019 24.0 5.9 42 302-343 6-60 (88)
36 smart00027 EH Eps15 homology d 42.1 69 0.0015 25.2 5.3 45 298-343 4-53 (96)
37 PF00486 Trans_reg_C: Transcri 38.1 33 0.00072 25.3 2.8 50 298-348 6-58 (77)
38 PTZ00183 centrin; Provisional 38.0 74 0.0016 26.5 5.3 59 285-343 70-135 (158)
39 cd05030 calgranulins Calgranul 36.7 1.2E+02 0.0025 23.8 5.8 33 302-334 6-43 (88)
40 cd05025 S-100A1 S-100A1: S-100 36.6 69 0.0015 25.0 4.5 31 303-333 11-43 (92)
41 COG5126 FRQ1 Ca2+-binding prot 36.2 85 0.0018 28.0 5.4 62 281-343 68-133 (160)
42 cd00052 EH Eps15 homology doma 34.0 1E+02 0.0022 21.7 4.8 47 285-331 16-63 (67)
43 smart00054 EFh EF-hand, calciu 32.4 33 0.0007 19.0 1.5 25 305-329 4-28 (29)
44 PRK10766 DNA-binding transcrip 30.3 54 0.0012 28.7 3.3 49 298-347 160-211 (221)
45 PRK10701 DNA-binding transcrip 29.3 59 0.0013 29.1 3.4 49 299-348 163-214 (240)
46 COG3710 CadC DNA-binding winge 28.5 50 0.0011 28.9 2.6 49 297-346 31-81 (148)
47 PRK02998 prsA peptidylprolyl i 28.4 71 0.0015 30.7 3.9 31 311-341 29-59 (283)
48 cd05029 S-100A6 S-100A6: S-100 27.9 1.1E+02 0.0024 24.1 4.3 48 284-331 28-81 (88)
49 KOG0546 HSP90 co-chaperone CPR 27.9 54 0.0012 33.0 3.0 58 1-61 113-181 (372)
50 PRK09108 type III secretion sy 26.9 1.2E+02 0.0026 30.4 5.4 58 290-347 189-246 (353)
51 cd05023 S-100A11 S-100A11: S-1 26.8 84 0.0018 24.8 3.5 48 284-331 27-82 (89)
52 cd05030 calgranulins Calgranul 26.3 94 0.002 24.3 3.7 49 282-330 24-80 (88)
53 PF13720 Acetyltransf_11: Udp 26.1 3E+02 0.0064 21.5 6.4 50 294-343 24-74 (83)
54 PTZ00184 calmodulin; Provision 25.5 1.8E+02 0.0038 23.7 5.5 49 282-330 25-76 (149)
55 PTZ00183 centrin; Provisional 25.2 83 0.0018 26.2 3.4 46 284-329 106-154 (158)
56 cd05022 S-100A13 S-100A13: S-1 24.8 1.2E+02 0.0027 24.0 4.1 49 284-332 25-78 (89)
57 PRK09468 ompR osmolarity respo 24.2 78 0.0017 28.2 3.2 50 298-348 162-214 (239)
58 PRK03095 prsA peptidylprolyl i 24.2 92 0.002 30.0 3.9 31 311-341 28-58 (287)
59 TIGR00328 flhB flagellar biosy 24.2 1.5E+02 0.0032 29.7 5.4 57 291-347 188-244 (347)
60 PTZ00315 2'-phosphotransferase 23.7 54 0.0012 35.1 2.3 33 142-182 477-510 (582)
61 PRK12721 secretion system appa 23.5 1.5E+02 0.0033 29.6 5.3 52 296-347 193-244 (349)
62 PRK05702 flhB flagellar biosyn 23.0 1.6E+02 0.0035 29.6 5.4 56 292-347 196-251 (359)
63 cd08533 SAM_PNT-ETS-1,2 Steril 22.7 53 0.0011 25.3 1.5 29 316-345 41-69 (71)
64 PRK06298 type III secretion sy 22.6 1.6E+02 0.0035 29.5 5.3 58 290-347 188-245 (356)
65 TIGR01404 FlhB_rel_III type II 22.6 1.7E+02 0.0036 29.3 5.4 55 292-346 188-242 (342)
66 cd00171 Sec7 Sec7 domain; Doma 21.6 1E+02 0.0022 27.8 3.3 31 315-345 147-182 (185)
67 PRK12557 H(2)-dependent methyl 21.3 1E+02 0.0022 30.7 3.6 57 290-347 273-339 (342)
68 cd05031 S-100A10_like S-100A10 21.1 1.8E+02 0.0039 22.7 4.4 47 284-330 26-80 (94)
69 PRK11173 two-component respons 20.6 1.1E+02 0.0024 27.3 3.4 50 298-348 161-213 (237)
70 cd08538 SAM_PNT-ESE-2-like Ste 20.5 90 0.0019 24.6 2.4 27 316-344 46-72 (78)
71 PRK12772 bifunctional flagella 20.4 1.7E+02 0.0038 31.5 5.4 52 296-347 456-507 (609)
72 PRK10167 hypothetical protein; 20.0 2.5E+02 0.0054 25.3 5.5 46 287-332 96-141 (169)
No 1
>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT). Tankyrase 1 poly-ADP-ribosylates Telomere Repeat Binding Factor 1 (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself or TRF1. The tankyrases also contain multiple ankyrin repeats that mediate protein-protein interaction (binding TRF1 and insulin-responsive aminopeptidase) and may function as a complex. Overexpression of Tank1 promotes increased telomere length when overexpressed, while overexpressed Tank2 has been shown to promote PARP cleavage- independent cell death (necrosis).
Probab=100.00 E-value=5.5e-38 Score=288.88 Aligned_cols=180 Identities=20% Similarity=0.311 Sum_probs=147.6
Q ss_pred CCceEEcCCCChHHHHHHHHHhcccCCC---------CCCCeEEEEEEeccCCcccHHHHHHHHHHHHHHHHHcCCCCce
Q 018800 71 SNGLISLQEGDKVYDLISGRLISGLGVL---------GAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANV 141 (350)
Q Consensus 71 ~~~lv~L~~~s~Ey~~V~~~F~~~~~~~---------~~~~~I~~I~RI~~~~~~n~~r~~~F~~~~~~~~~k~~g~~N~ 141 (350)
...+++|.+++.||+.|++.|.+|.+++ .+.++|++|+|| ||+.||++|+.++++|..+++...||
T Consensus 15 ~~~~~~l~p~~~e~~~v~~~~~~t~~~~~~~~~~~~~~~~~~I~kI~RI-----QN~~Lw~~y~~kk~~~~~~~~~~~ne 89 (223)
T cd01438 15 GTILLDLAPDDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNIIRIQKV-----VNKKLRERYCHRQKEIAEENHNHHNE 89 (223)
T ss_pred cceEEEecCCCchHHHHHHHHHhhccccccCcccccccccccEEEEEec-----CCHHHHHHHHHHHHHHHHhhCCCcce
Confidence 3569999999999999999999998753 235799999999 89999999999999999988888999
Q ss_pred eEeeeccChhhHHHHHhhcCCCCCCCCCCCcccceeeeCCCCCCCcCCcccccC---------CCC-----cEEEEEEEe
Q 018800 142 KYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKNSAID---------REG-----MRYLLLCRV 207 (350)
Q Consensus 142 r~LfHGTs~~~i~~Il~~GF~~~~~~~~~~~fG~GIYFA~~a~~s~S~~Ys~~d---------~~G-----~r~mlLCrV 207 (350)
++|||||+. +..|+.+|||++.+. .++|||+|||||.+++ +|++||... .++ .+.||||||
T Consensus 90 ~~LfHGt~~--~~~I~~~GFd~r~~~-~g~~fGkGiYFA~~as--kS~~Y~~~~~~~~~~p~~~~~~~~~~~~~MfLcrV 164 (223)
T cd01438 90 RMLFHGSPF--INAIIHKGFDERHAY-IGGMFGAGIYFAENSS--KSNQYVYGIGGGTGCPTHKDRSCYVCHRQMLFCRV 164 (223)
T ss_pred EEEeecCcc--hhHHHHhCCCccccc-cCceeeeeeeeccchh--hhccccccccccccCcccccccccccceeEEEEEE
Confidence 999999974 669999999988753 6899999999999995 457886531 111 478999999
Q ss_pred ecCCceeeCCCCCCCCCCCCCCcceecCCC----CCcEEEEEcCCCccccccccEEEEEcC
Q 018800 208 ILGKQEVVHPGSDQYHPSTGEFESGVDNLQ----VPKKYILWSTNMNTHILPEYIISLKAP 264 (350)
Q Consensus 208 llG~~e~v~p~s~~~~ps~~~yDSvVd~~~----~p~~yVVy~~~mN~qiyPeYlItyk~~ 264 (350)
++|++....+.... .+.+.+|||+++... ..+|||||+. +||||+|||+|+..
T Consensus 165 lLGk~~~~~~~~~~-~~~P~G~dSv~g~Ps~~~~~~~EfVVyd~---~Q~YPeYLI~y~~~ 221 (223)
T cd01438 165 TLGKSFLQFSAMKM-AHAPPGHHSVIGRPSVNGLAYAEYVIYRG---EQAYPEYLITYQIV 221 (223)
T ss_pred EecceeeccCCccc-CCCCCCCcceEcCCCCCCcccCEEEEECC---CcEeeEEEEEEEee
Confidence 99998654433322 233568999998532 2479999997 99999999999863
No 2
>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself. PARP, also known as poly(ADP-ribose) synthetase and poly(ADP-ribose) transferase, transfers the ADP-ribose moiety from its substrate, nicotinamide adenine dinucleotide (NAD), to carboxylate groups of aspartic and glutamic residues. Whereas some PARPs might function in genome protection, others appear to play different roles in the cell, including telomere replication and cellular transport. PARP-1 is a multifunctional enzyme. The polypeptide has a highly conserved modular organisation consisting of an N-terminal DNA-binding domain, a central regulating segment, and a C-terminal or F region accommodating the catalytic centre. The F region is composed of two parts: a purely alpha-helical N- terminal domain (alpha-hd), and the mixed alpha/beta C-terminal catalytic domain bearing the putative NAD binding site. Although proteins of the PARP family are related through their PARP catalytic domain, they do not resemble each other outside of that region, but rather, they contain unique domains that distinguish them from each other and hint at their discrete functions. Domains with which the PARP catalytic domain is found associated include zinc fingers, SAP, ankyrin, BRCT, Macro, SAM, WWE and UIM domains [, , ]. The alpha-hd domain is about 130 amino acids in length and consists of an up-up-down-up-down-down motif of helices. It is thought to relay the activation signal issued on binding to damaged DNA [, ]. The PARP catalytic domain is about 230 residues in length. Its core consists of a five-stranded antiparallel beta-sheet and four-stranded mixed beta-sheet. The two sheets are consecutive and are connected via a single pair of hydrogen bonds between two strands that run at an angle of 90 degrees. These central beta-sheets are surrounded by five alpha-helices, three 3(10)-helices, and by a three- and a two-stranded beta-sheet in a 37-residue excursion between two central beta-strands [, ]. The active site, known as the 'PARP signature' is formed by a block of 50 amino acids that is strictly conserved among the vertebrates and highly conserved among all species. The 'PARP signature' is characteristic of all PARP protein family members. It is formed by a segment of conserved amino acid residues formed by a beta-sheet, an alpha-helix, a 3(10)-helix, a beta-sheet, and an alpha-helix [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity; PDB: 2PQF_F 4F0D_A 1PAX_A 1EFY_A 1A26_A 2PAW_A 4PAX_A 3PAX_A 2PAX_A 3P0N_A ....
Probab=100.00 E-value=1.2e-35 Score=271.82 Aligned_cols=173 Identities=25% Similarity=0.459 Sum_probs=144.7
Q ss_pred CceEEcCCCChHHHHHHHHHhcccCCCCC-CCeEEEEEEeccCCcccHHHHHHHHHHHHHHHHHcCCCCceeEeeeccCh
Q 018800 72 NGLISLQEGDKVYDLISGRLISGLGVLGA-QAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGTK 150 (350)
Q Consensus 72 ~~lv~L~~~s~Ey~~V~~~F~~~~~~~~~-~~~I~~I~RI~~~~~~n~~r~~~F~~~~~~~~~k~~g~~N~r~LfHGTs~ 150 (350)
..|+.|++++.||+.|+++|.++|.+... ..+|.+|+|| +|+.+|++|+..++ ..|+++|||||+.
T Consensus 3 ~~l~~l~~~s~ey~~I~~~f~~~~~~~~~~~~~I~~I~~i-----~~~~~~~~f~~~~~--------~~n~~~L~HGt~~ 69 (206)
T PF00644_consen 3 CELVPLEPDSEEYKEIEKYFKKTWKPVHKYKPKIKKIFRI-----QNPSLWERFEEKKK--------EGNERLLFHGTSA 69 (206)
T ss_dssp EEEEEEETTSHHHHHHHHHHHHTSTSTTTEEEEEEEEEEE-----EEHHHHHHHHHHHH--------SSSEEEEEEEETG
T ss_pred CEEEEcCCCCHHHHHHHHHHHhHCCCCCCCCCEEEEEEEE-----cChhHHHHHHHHHh--------cCCceEEeCCCCh
Confidence 46899999999999999999999987554 6899999999 79999999987664 4689999999999
Q ss_pred hhHHHHHhhcC--CCCCCCCCCCcccceeeeCCCCCCCcCCccccc-CCCCcEEEEEEEeecCCceeeCCCCCCCCCCCC
Q 018800 151 DEICKIIEHGF--GYCGKPSNNGMYGCGVYLSPDDSPLECVKNSAI-DREGMRYLLLCRVILGKQEVVHPGSDQYHPSTG 227 (350)
Q Consensus 151 ~~i~~Il~~GF--~~~~~~~~~~~fG~GIYFA~~a~~s~S~~Ys~~-d~~G~r~mlLCrVllG~~e~v~p~s~~~~ps~~ 227 (350)
+++.+|+++|| +.+.++.+|++||.|||||+++ ++|+.||.. +.+|.++||||+|++|++..+..... ...++.
T Consensus 70 ~~~~~I~~~G~~~~~~~~~~~g~~fG~GiYfs~~~--s~s~~Y~~~~~~~g~~~~llc~V~lG~~~~~~~~~~-~~~~~~ 146 (206)
T PF00644_consen 70 ENICSILRNGFKIDPRKASRNGGMFGKGIYFSDNS--SKSAQYSKPSDSNGERFMLLCRVALGKPYELKNDNP-MTSPPP 146 (206)
T ss_dssp GGHHHHHHHSS---TTTSCGGCSTTSSSEEEBSSH--HHHHTTSTSESSSSEEEEEEEEEEECSEEEESSCCT-GSSGCT
T ss_pred hhccchhcCCCccCccccccCCceeeeEEEeCcch--hhhcccCCCccCCcceeeeEEEEEeccceeeccCcc-cccccC
Confidence 99999999999 6666666889999999999987 577899987 88999999999999999765543222 233355
Q ss_pred CCcceec---------------------------CCCCCcEEEEEcCCCccccccccEEEEEc
Q 018800 228 EFESGVD---------------------------NLQVPKKYILWSTNMNTHILPEYIISLKA 263 (350)
Q Consensus 228 ~yDSvVd---------------------------~~~~p~~yVVy~~~mN~qiyPeYlItyk~ 263 (350)
+|||+.+ ...++++||||+. .|+||+|||+|+.
T Consensus 147 g~~sv~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~eyVVy~~---~q~~p~YLi~y~~ 206 (206)
T PF00644_consen 147 GYDSVKGVGSKTPEDTIDEDGVPSGKGYVSEYDGSSLNPNEYVVYDN---SQVYPEYLITYKF 206 (206)
T ss_dssp TESEEEECESEEEGGEEEETTETTSSEEESCEESSSSSCSEEEESSG---GGEEEEEEEEEEE
T ss_pred CcceecCCCccCCccccccCCCCCCCCccCccCCCccCCCEEEEEcc---cceeeEEEEEEEC
Confidence 6777543 1256799999997 9999999999974
No 3
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes pleotropic effects in mammalian species through modulating gene expression. TCCD indicible PARP (TiPARP) is a target of TCDD that may contribute to multiple responses to TCDD by modulating protein function through poly ADP-ribosylation
Probab=100.00 E-value=1.6e-35 Score=250.67 Aligned_cols=114 Identities=25% Similarity=0.429 Sum_probs=100.8
Q ss_pred EeeeccChhhHHHHHhhcCCCCCCCCCCCcccceeeeCCCCCCCcCCcccccCC--CCcEEEEEEEeecCCceee-----
Q 018800 143 YAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDDSPLECVKNSAIDR--EGMRYLLLCRVILGKQEVV----- 215 (350)
Q Consensus 143 ~LfHGTs~~~i~~Il~~GF~~~~~~~~~~~fG~GIYFA~~a~~s~S~~Ys~~d~--~G~r~mlLCrVllG~~e~v----- 215 (350)
+|||||+.+++..|+++||+++.++.++++||+|||||++++ +|++||..++ +|.++|||||||+|+++..
T Consensus 1 ~LfHGt~~~~~~~I~~~GF~~~~~g~~~~~~G~GiYFA~~~s--~S~~Y~~~~~~~~g~~~mfL~rVl~G~~~~~~~~~~ 78 (121)
T cd01439 1 LLFHGTSADAVEAICRHGFDRRFCGKHGTMYGKGSYFAKNAS--YSHQYSKKSPKADGLKEMFLARVLTGDYTQGHPGYR 78 (121)
T ss_pred CcccccChhhHHHHHHccCCCccCCCCCCccCCeeecccChh--hhhcccccCcCCCCcEEEEEEEEEecceecCCCccc
Confidence 589999999999999999999998888999999999999885 5578886555 4999999999999997654
Q ss_pred CCCCCCCCCCCCCCcceecCCCCCcEEEEEcCCCccccccccEEEE
Q 018800 216 HPGSDQYHPSTGEFESGVDNLQVPKKYILWSTNMNTHILPEYIISL 261 (350)
Q Consensus 216 ~p~s~~~~ps~~~yDSvVd~~~~p~~yVVy~~~mN~qiyPeYlIty 261 (350)
.||.++..|++++|||+||+..+|++||||++ .||||||||+|
T Consensus 79 ~pP~~~~~~~~~~yDS~vd~~~~p~~~Vvf~~---~q~yPeYlI~y 121 (121)
T cd01439 79 RPPLKPSGVELDRYDSCVDNVSNPSIFVIFSD---VQAYPEYLITY 121 (121)
T ss_pred CCCCccCCCCCCCccceeCCCCCCCEEEEEeC---CccceeEEEEC
Confidence 34446666778999999999999999999998 99999999997
No 4
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=99.96 E-value=2.6e-30 Score=197.94 Aligned_cols=69 Identities=58% Similarity=0.986 Sum_probs=67.6
Q ss_pred CCCCCCCcchHHHHHHHHcCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 018800 278 RVPTSPWMPFPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAK 346 (350)
Q Consensus 278 ~~p~sp~~~f~~L~~~l~~~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~ivGd~~L~~~i~~~~~~ 346 (350)
++|+|||||||+||++|+++|||++|++|+++|++||++||||+||||+||.||||+||++||+++|+|
T Consensus 2 ~~P~sp~~~F~~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~lL~s~I~~lq~k 70 (70)
T PF12174_consen 2 RRPTSPWMPFPMLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGDQLLRSAIKSLQQK 70 (70)
T ss_pred CCCCCCcccHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 569999999999999999999999999999999999999999999999999999999999999999986
No 5
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1.
Probab=99.96 E-value=2.4e-29 Score=246.86 Aligned_cols=173 Identities=18% Similarity=0.273 Sum_probs=139.6
Q ss_pred CceEEcCCCChHHHHHHHHHhcccCCC-CCCCeEEEEEEeccCCcccHHHHHHHHHHHHHHHHHcCCCCceeEeeeccCh
Q 018800 72 NGLISLQEGDKVYDLISGRLISGLGVL-GAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGTK 150 (350)
Q Consensus 72 ~~lv~L~~~s~Ey~~V~~~F~~~~~~~-~~~~~I~~I~RI~~~~~~n~~r~~~F~~~~~~~~~k~~g~~N~r~LfHGTs~ 150 (350)
..+.+|+++++||+.|+++|.+|+++. ....+|..|+|| ++...|++|+.++ ...|+++|||||+.
T Consensus 138 ~~i~~L~~~s~ey~~I~~y~~~t~~~~~~~~~~V~~If~i-----~r~~e~~~F~~~~--------~~~n~~lLwHGsr~ 204 (347)
T cd01437 138 CKIEPLDKDSEEYKIIEKYLKNTHAPTTEYTVEVQEIFRV-----EREGETDRFKPFK--------KLGNRKLLWHGSRL 204 (347)
T ss_pred eeEEECCCCChHHHHHHHHHHhcCCCCCCcceeEEEEEEe-----cCCCchhhhHHhh--------ccCCeEEEEcCCCh
Confidence 669999999999999999999998763 345899999999 5667778886422 35799999999999
Q ss_pred hhHHHHHhhcCCCCC--CCCCCCcccceeeeCCCCCCCcCCcccccCC-CCcEEEEEEEeecCCceeeCCCCCCCCCCCC
Q 018800 151 DEICKIIEHGFGYCG--KPSNNGMYGCGVYLSPDDSPLECVKNSAIDR-EGMRYLLLCRVILGKQEVVHPGSDQYHPSTG 227 (350)
Q Consensus 151 ~~i~~Il~~GF~~~~--~~~~~~~fG~GIYFA~~a~~s~S~~Ys~~d~-~G~r~mlLCrVllG~~e~v~p~s~~~~ps~~ 227 (350)
.++.+|+++||+++. ++.+|.|||+|||||+.+ ++|++||.++. +|.++||||+|++|++.............+.
T Consensus 205 ~n~~~Il~~Gl~~~~~~~~~~g~mfGkGIYFAd~~--skS~~Y~~~~~~~~~~~mlLc~V~lG~~~~~~~~~~~~~~~p~ 282 (347)
T cd01437 205 TNFVGILSQGLRIAPPEAPVTGYMFGKGIYFADMF--SKSANYCHASASDPTGLLLLCEVALGKMNELKKADYMAKELPK 282 (347)
T ss_pred hhHHHHHhcCCCcCccccccCCccccceEeecCch--HhhhhhcccCCCCCceEEEEEEEecCceehhccCChhhccCCC
Confidence 999999999999876 455788999999999988 67789998776 7899999999999998655322211221367
Q ss_pred CCcceecC---------------------------------CCCCcEEEEEcCCCccccccccEEEEE
Q 018800 228 EFESGVDN---------------------------------LQVPKKYILWSTNMNTHILPEYIISLK 262 (350)
Q Consensus 228 ~yDSvVd~---------------------------------~~~p~~yVVy~~~mN~qiyPeYlItyk 262 (350)
+|||+.+- .-..+|||||+. .||.+.|||.++
T Consensus 283 g~~Sv~g~G~~~p~~~~~~~~~~gv~vP~G~~~~~~~~~~~~l~~nEyiVYd~---~Qir~rYLv~vk 347 (347)
T cd01437 283 GKHSVKGLGKTAPDPSEFEIDLDGVVVPLGKPVPSGHKTDTSLLYNEYIVYDV---AQVRLKYLLEVK 347 (347)
T ss_pred CceeeEeccCCCCCchhheeccCCeEeeCCccccCCcCCCcccccCCeEeech---hHEEEEEEEEeC
Confidence 89987541 012379999998 999999999875
No 6
>PLN03124 poly [ADP-ribose] polymerase; Provisional
Probab=99.89 E-value=6.1e-23 Score=213.60 Aligned_cols=174 Identities=21% Similarity=0.277 Sum_probs=131.3
Q ss_pred CceEEcCCCChHHHHHHHHHhcccCCCCC--CCeEEEEEEeccCCcccHHHHHHHHHHHHHHHHHcCCCCceeEeeeccC
Q 018800 72 NGLISLQEGDKVYDLISGRLISGLGVLGA--QAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGT 149 (350)
Q Consensus 72 ~~lv~L~~~s~Ey~~V~~~F~~~~~~~~~--~~~I~~I~RI~~~~~~n~~r~~~F~~~~~~~~~k~~g~~N~r~LfHGTs 149 (350)
..|.+|++++.||+.|++.+..|-++.+. ..+|..|++|.+. ..-++|..+. ...|.++|||||+
T Consensus 428 c~i~pLd~~S~efk~I~~Yl~nT~~~th~~y~l~V~~If~V~R~-----~E~~rF~~~~--------~~~Nr~LLWHGSr 494 (643)
T PLN03124 428 CELEPLDTDSEEFSMIAKYLENTHGQTHSGYTLEIVQIFKVSRE-----GEDERFQKFS--------STKNRMLLWHGSR 494 (643)
T ss_pred CeeEEcCCCCHHHHHHHHHHHhcCCCccCcCceeEEEEEEeccc-----cchhhHHHhh--------ccCCeEEEEcCCC
Confidence 66999999999999999999998766442 4789999999543 3334454322 2479999999999
Q ss_pred hhhHHHHHhhcCCCC--CCCCCCCcccceeeeCCCCCCCcCCcccccCC-CCcEEEEEEEeecCCceee-CCCCCCCCCC
Q 018800 150 KDEICKIIEHGFGYC--GKPSNNGMYGCGVYLSPDDSPLECVKNSAIDR-EGMRYLLLCRVILGKQEVV-HPGSDQYHPS 225 (350)
Q Consensus 150 ~~~i~~Il~~GF~~~--~~~~~~~~fG~GIYFA~~a~~s~S~~Ys~~d~-~G~r~mlLCrVllG~~e~v-~p~s~~~~ps 225 (350)
..++.+|+++||.+. .++.+|.|||.|||||+.. ++|++||.+.. ++.+.||||+|+||++... .+......+
T Consensus 495 ~~N~~gILs~GLriaPpea~~~GymfGkGIYFAd~~--skSa~Yc~~~~~~~~g~llLceVaLG~~~el~~~~y~a~~~- 571 (643)
T PLN03124 495 LTNWTGILSQGLRIAPPEAPSTGYMFGKGVYFADMF--SKSANYCYASAANPDGVLLLCEVALGDMNELLQADYNANKL- 571 (643)
T ss_pred cccHHHHHhccCccCCcccccccccccceeEecchh--hhhhhhhhccCCCCeeEEEEEEEecCCcchhccCccccccC-
Confidence 999999999999963 3456899999999999877 78899997654 4578999999999997433 222111111
Q ss_pred CCCCcceec----------------C----------------CCCCcEEEEEcCCCccccccccEEEEEcC
Q 018800 226 TGEFESGVD----------------N----------------LQVPKKYILWSTNMNTHILPEYIISLKAP 264 (350)
Q Consensus 226 ~~~yDSvVd----------------~----------------~~~p~~yVVy~~~mN~qiyPeYlItyk~~ 264 (350)
+.+|||+.+ . .-..+|||||+. .||...|||..+..
T Consensus 572 p~G~~S~kG~G~~~Pdp~~~~~~~dGV~VP~Gk~~~~~~~~~~L~yNEYIVYd~---~Qvr~rYLv~vkf~ 639 (643)
T PLN03124 572 PPGKLSTKGVGRTVPDPSEAKTLEDGVVVPLGKPVESPYSKGSLEYNEYIVYNV---DQIRMRYVLQVKFN 639 (643)
T ss_pred CCCceeEEeccCCCCCcccceecCCCeEeeCCccccCCCCCCccccCceEEech---hHeEEEEEEEEEEe
Confidence 346666531 0 011379999999 99999999988764
No 7
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=99.88 E-value=3e-22 Score=217.20 Aligned_cols=175 Identities=15% Similarity=0.255 Sum_probs=132.1
Q ss_pred CceEEcCCCChHHHHHHHHHhcccCCCCC--CCeEEEEEEeccCCcccHHHHHHHHHHHHHHHHHcCCCCceeEeeeccC
Q 018800 72 NGLISLQEGDKVYDLISGRLISGLGVLGA--QAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGT 149 (350)
Q Consensus 72 ~~lv~L~~~s~Ey~~V~~~F~~~~~~~~~--~~~I~~I~RI~~~~~~n~~r~~~F~~~~~~~~~k~~g~~N~r~LfHGTs 149 (350)
..|.+|++++.||+.|++.+..|.++.+. ..+|..|++|.+. ...++|..+++ ...|.++|||||+
T Consensus 767 ~~i~~L~~~s~ey~~I~~Yl~nT~~~th~~y~l~v~~IF~v~r~-----gE~~rf~~~~~-------~~~Nr~LLwHGSr 834 (981)
T PLN03123 767 CDISPLPHDSEDYKLIEKYLLTTHAPTHTDWSLELEEVFSLERE-----GEFDKYAPYKE-------KLKNRMLLWHGSR 834 (981)
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCccccccceeeEEEEeccc-----ccccchhhHhh-------cCCCceEEEcCCC
Confidence 56999999999999999999999765443 4679999999644 33334443322 2369999999999
Q ss_pred hhhHHHHHhhcCCCC--CCCCCCCcccceeeeCCCCCCCcCCcccccCC-CCcEEEEEEEeecCCceeeCCCCCCCCCCC
Q 018800 150 KDEICKIIEHGFGYC--GKPSNNGMYGCGVYLSPDDSPLECVKNSAIDR-EGMRYLLLCRVILGKQEVVHPGSDQYHPST 226 (350)
Q Consensus 150 ~~~i~~Il~~GF~~~--~~~~~~~~fG~GIYFA~~a~~s~S~~Ys~~d~-~G~r~mlLCrVllG~~e~v~p~s~~~~ps~ 226 (350)
..++.+|+++||.+. .++.+|.|||+|||||+.. ++|++||.+.. ++...||||+|+||++...........| +
T Consensus 835 ~~N~~gILs~GLriaPpeap~tGymfGkGIYFAD~~--SKSanYc~~~~~~~~g~llLceVaLG~~~e~~~~~~~~~~-p 911 (981)
T PLN03123 835 LTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLV--SKSAQYCYTDRKNPVGLMLLSEVALGEIYELKKAKYMDKP-P 911 (981)
T ss_pred cccHHHHhhccCccCCccccccCccccceeEecchh--hhhhhhhcccCCCCceEEEEEEEecCChhhhccccccccC-C
Confidence 999999999999963 4567899999999999877 78899997654 6788999999999998443211111122 4
Q ss_pred CCCcceecC--------------------------------CCCCcEEEEEcCCCccccccccEEEEEcC
Q 018800 227 GEFESGVDN--------------------------------LQVPKKYILWSTNMNTHILPEYIISLKAP 264 (350)
Q Consensus 227 ~~yDSvVd~--------------------------------~~~p~~yVVy~~~mN~qiyPeYlItyk~~ 264 (350)
.+|||+.+- .-..+|||||+. .|+...|||..+..
T Consensus 912 ~g~~S~~g~G~~~Pd~~~~~~~~dgv~vP~Gk~~~~~~~~~~L~yNEYIVYd~---~Qvr~rYLv~vkf~ 978 (981)
T PLN03123 912 RGKHSTKGLGKTVPQESEFVKWRDDVVVPCGKPVPSKVKASELMYNEYIVYNT---AQVKLQFLLKVRFK 978 (981)
T ss_pred CCceeeeecCCCCCCcccceecCCceEeeCCCCccCcccCCccccCceEEech---hHEEEEEEEEEEee
Confidence 566665320 012479999999 99999999988753
No 8
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=99.86 E-value=1.8e-21 Score=207.40 Aligned_cols=175 Identities=15% Similarity=0.228 Sum_probs=129.1
Q ss_pred CCceEEcCCCChHHHHHHHHHhcccCCCC-----CCCeEEEEEEeccCCcccHHHHHHHHHHHHHHHHHcCCCCceeEee
Q 018800 71 SNGLISLQEGDKVYDLISGRLISGLGVLG-----AQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAW 145 (350)
Q Consensus 71 ~~~lv~L~~~s~Ey~~V~~~F~~~~~~~~-----~~~~I~~I~RI~~~~~~n~~r~~~F~~~~~~~~~k~~g~~N~r~Lf 145 (350)
...|.+|++++.||+.|++.+..|-++.+ -..+|..|+||.+.+ .. +|..++ ...|.++||
T Consensus 590 ~~~i~pLd~~S~eyk~I~~Yl~nT~~~th~~~~~y~l~v~~IF~veR~g---e~---rf~~~~--------~l~NR~LLW 655 (815)
T PLN03122 590 GCSISPVDKESDDYKMIVKYLEKTYEPVKVGDVSYSVSVENIFAVESSA---GP---SLDEIK--------KLPNKVLLW 655 (815)
T ss_pred CceEEEcCCCCHHHHHHHHHHHhcCCCccccCcccceeEeEEEEeccCc---cc---cchhhc--------CCCCceEEe
Confidence 36699999999999999999999977644 146799999996542 23 443221 247999999
Q ss_pred eccChhhHHHHHhhcCCCC--CCCCCCCcccceeeeCCCCCCCcCCcccccC-CCCcEEEEEEEeecCCc--eeeCCCCC
Q 018800 146 YAGTKDEICKIIEHGFGYC--GKPSNNGMYGCGVYLSPDDSPLECVKNSAID-REGMRYLLLCRVILGKQ--EVVHPGSD 220 (350)
Q Consensus 146 HGTs~~~i~~Il~~GF~~~--~~~~~~~~fG~GIYFA~~a~~s~S~~Ys~~d-~~G~r~mlLCrVllG~~--e~v~p~s~ 220 (350)
||++..++.+|+++||.+. .+|.+|.|||+|||||+.+ |+|++||... .++...||||.|+||++ +...+...
T Consensus 656 HGSR~tN~~gILsqGLRIAPPEAPvtGYMFGKGIYFAD~~--SKSAnYC~t~~~~~~GlLlLcEVALG~~~~el~~~~~~ 733 (815)
T PLN03122 656 CGTRSSNLLRHLAKGFLPAVCSLPVPGYMFGKAIVCSDAA--AEAARYGFTAVDRPEGFLVLAVASLGDEVLELTKPPED 733 (815)
T ss_pred ccchhhhHHHHhhCCCccCCcccCCCCCccCCeeEecchh--hhhhhhhccccCCCcceEEEEHhhcCchHHHhhcCchh
Confidence 9999999999999999974 4677999999999999887 7889999764 35677899999999996 33322100
Q ss_pred ---------------CCCCCCCCC----ccee------------cCCCCCcEEEEEcCCCccccccccEEEEEcC
Q 018800 221 ---------------QYHPSTGEF----ESGV------------DNLQVPKKYILWSTNMNTHILPEYIISLKAP 264 (350)
Q Consensus 221 ---------------~~~ps~~~y----DSvV------------d~~~~p~~yVVy~~~mN~qiyPeYlItyk~~ 264 (350)
...|.+..+ |-++ +..-..+|||||+. .||...|||..+..
T Consensus 734 ~~~~~~g~~Stkg~G~~~Pdp~~~~~~~dgV~VP~Gk~~~~~~~~~~L~yNEYIVYDv---aQvrirYL~~vkf~ 805 (815)
T PLN03122 734 VKSYEEKKVGVKGLGRKKTDESEHFKWRDDITVPCGRLIPSEHKDSPLEYNEYAVYDP---KQVSIRFLVGVKYE 805 (815)
T ss_pred hhccCCCCceeeecCCCcCCCccceecCCCeEEeCCCCccCCCCCcccccCceEEEch---hHEEEEEEEEEEee
Confidence 011221111 1111 11123579999999 99999999998874
No 9
>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates. Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. Poly(ADP-ribose) polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length in part through poy(ADP_ribosylation) of telomere repeat binding factor 1 (TRF1). Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region o
Probab=99.76 E-value=7.5e-19 Score=151.73 Aligned_cols=111 Identities=17% Similarity=0.290 Sum_probs=86.0
Q ss_pred EeeeccChhhHHHHHhhcCCCCCCCC--CCCcccceeeeCCCCCCCcCCcccccCCCC---------------cEEEEEE
Q 018800 143 YAWYAGTKDEICKIIEHGFGYCGKPS--NNGMYGCGVYLSPDDSPLECVKNSAIDREG---------------MRYLLLC 205 (350)
Q Consensus 143 ~LfHGTs~~~i~~Il~~GF~~~~~~~--~~~~fG~GIYFA~~a~~s~S~~Ys~~d~~G---------------~r~mlLC 205 (350)
+|||||+..++.+|+++||+++..+. ++++||+|||||+++ ++|+.||..+.++ .+.||++
T Consensus 1 ~l~HGs~~~n~~~I~~~Gl~~~~~~~~~~g~~~G~GiYfa~~~--s~S~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~fl~ 78 (137)
T cd01341 1 FLFHGSPPGNVISILKLGLRPASYGVLLNGGMFGKGIYSAPNI--SKSNGYSVGCDGQHVFQNGKPKVCGRELCVFGFLT 78 (137)
T ss_pred CccccCCccchHHHhhCCCCCCCccccccccccCceeeecCCh--HHhhhhhcccCCcccccccccccccccccceeEEE
Confidence 48999999999999999999988655 489999999999988 5668999877653 3457776
Q ss_pred EeecCCcee-----eCCCCCCCCCCCCCCccee----cCCCCCcEEEEEcCCCcccccccc
Q 018800 206 RVILGKQEV-----VHPGSDQYHPSTGEFESGV----DNLQVPKKYILWSTNMNTHILPEY 257 (350)
Q Consensus 206 rVllG~~e~-----v~p~s~~~~ps~~~yDSvV----d~~~~p~~yVVy~~~mN~qiyPeY 257 (350)
+|++|.... ..|+.+...+..+.||+.+ |+..+|++||||+.- +|+||+|
T Consensus 79 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~e~VV~~~~--~Qv~~~Y 137 (137)
T cd01341 79 LGVMSGATEESSRVLFPRNFRGATGAEVVDLLVAMCRDALLLPREYIIFEPY--SQVSIRY 137 (137)
T ss_pred EEEeccccccccccccccccCCCCCCeEEEcccccccchhhCCCeEEEecch--hhceecC
Confidence 666665422 2344443345566788888 478899999999941 7999998
No 10
>KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1.5e-08 Score=105.21 Aligned_cols=147 Identities=17% Similarity=0.202 Sum_probs=98.2
Q ss_pred CceEEcCCCChHHHHHHHHHhcccCCCCCCCeEEEEEEeccCCcccHHHHHHHHHHHHHHHHH-cCCCCceeEeeeccCh
Q 018800 72 NGLISLQEGDKVYDLISGRLISGLGVLGAQAKIVSIHRNSFSGVMGQAKIQSFQIFAKAVAQK-CGGDANVKYAWYAGTK 150 (350)
Q Consensus 72 ~~lv~L~~~s~Ey~~V~~~F~~~~~~~~~~~~I~~I~RI~~~~~~n~~r~~~F~~~~~~~~~k-~~g~~N~r~LfHGTs~ 150 (350)
..+..++.++.||+.+.+....+-...... ..+.+..+.....++ ++.... .....|.+++|||+..
T Consensus 309 c~~~~~~~~~~e~kmi~~~~~~~~~~~~~~-~~~~~~~l~k~~~~~-----------e~~~~~~~~~~~~r~llw~gs~~ 376 (531)
T KOG1037|consen 309 CKIEKLDKDSEEFKMIAQYVEKTHAKTSTV-KVVQIADLKKVNEKN-----------EADRKVDISELINRQLLWHGSRF 376 (531)
T ss_pred hhhccccccchhHHHHHHHHHhhccccCcc-CceeehhHHHhhhcc-----------cccccccCcccccccchhcccce
Confidence 557788888999999999988874332222 222343331111111 111111 1235799999999999
Q ss_pred hhHHHHHhhcCCCCCC--CCCCCcccceeeeCCCCCCCcCCcccccC-CCCcEEEEEEEeecCCcee-eCCCCCCCCCCC
Q 018800 151 DEICKIIEHGFGYCGK--PSNNGMYGCGVYLSPDDSPLECVKNSAID-REGMRYLLLCRVILGKQEV-VHPGSDQYHPST 226 (350)
Q Consensus 151 ~~i~~Il~~GF~~~~~--~~~~~~fG~GIYFA~~a~~s~S~~Ys~~d-~~G~r~mlLCrVllG~~e~-v~p~s~~~~ps~ 226 (350)
.++..|+..|+..... +..+++||.|||||..+ ++++.||.+. ..+..+|++|.|++|+.-. +.++.... ..+
T Consensus 377 ~n~a~~l~~g~~~~~~~~~~~g~~~gkgiyfa~~~--sks~~y~~~~~~k~~~~ll~~~~alg~~~~~~~~~~~~~-~~~ 453 (531)
T KOG1037|consen 377 GNLAGILSPGLRLAPSEAPVTGYMFGKGIYFADAA--SKSANYCVTMKGKPTGHLLLCDVALGKEQDLVESIPSLT-ELP 453 (531)
T ss_pred eeeeccccCCceecCCCCCceeeccccceEeeeec--ccccccccccccCchhhhhhhhhhccchhhhhcCCcccc-cCC
Confidence 9999999999987543 34799999999999888 6889998755 5667899999999999733 22211111 124
Q ss_pred CCCccee
Q 018800 227 GEFESGV 233 (350)
Q Consensus 227 ~~yDSvV 233 (350)
.++||+.
T Consensus 454 ~~~~sv~ 460 (531)
T KOG1037|consen 454 AGKDSVK 460 (531)
T ss_pred CCCcchh
Confidence 4677764
No 11
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=89.93 E-value=0.68 Score=42.26 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=44.0
Q ss_pred cchHHHHHHHH---cCCChh-hHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh------hHHHHHHHHH
Q 018800 285 MPFPILISALS---KFLPPP-TVALMSKYYRDHKGKKVSRHELIQRVRQIAG------DQLLIAVIKS 342 (350)
Q Consensus 285 ~~f~~L~~~l~---~~l~~~-~~~~i~~~y~~~k~~ki~r~~~v~~~r~ivG------d~~L~~~i~~ 342 (350)
+.|..-+..++ +.-++. ++....+.|+-=+.|.|+|+||.+.|+..+| |.+|..++-+
T Consensus 84 v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~ 151 (187)
T KOG0034|consen 84 VDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDK 151 (187)
T ss_pred cCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 76666555554 444445 8889999999999999999999999999999 4455544433
No 12
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=88.56 E-value=1.6 Score=41.30 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=55.1
Q ss_pred CCCCcchHHHHHHHHcCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh-hH------HHHHHHHHhh
Q 018800 281 TSPWMPFPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAG-DQ------LLIAVIKSYR 344 (350)
Q Consensus 281 ~sp~~~f~~L~~~l~~~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~ivG-d~------~L~~~i~~~~ 344 (350)
..+-+-...|-..|.+.|++++...=..+...|=.+||||+||-+.++.+.| |+ +|.+++.+.+
T Consensus 5 ~~~Ridl~~lk~~l~~~LG~~~~~~Y~~~l~~fl~~klsk~Efd~~~~~~L~~~~~~LHN~li~sIl~na~ 75 (252)
T PF12767_consen 5 QNSRIDLEELKSQLQKRLGPDRWKKYFQSLKRFLSGKLSKEEFDKECRRILGRENVHLHNQLILSILKNAL 75 (252)
T ss_pred cccccCHHHHHHHHHHHHChHHHHHHHHHHHHHHHhccCHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHh
Confidence 3445677889999999999999999999999999999999999999999999 54 5777777663
No 13
>PF12509 DUF3715: Protein of unknown function (DUF3715); InterPro: IPR022188 This domain family is found in eukaryotes, and is approximately 170 amino acids in length.
Probab=85.46 E-value=2.9 Score=37.38 Aligned_cols=115 Identities=15% Similarity=0.267 Sum_probs=72.0
Q ss_pred ccHHHHHHHHHHHHHHHHHcC--CCCceeEeeeccCh-hhHHHHHhhcCCCCCCCCCCCcccc---eeeeCCCCCCCcCC
Q 018800 116 MGQAKIQSFQIFAKAVAQKCG--GDANVKYAWYAGTK-DEICKIIEHGFGYCGKPSNNGMYGC---GVYLSPDDSPLECV 189 (350)
Q Consensus 116 ~n~~r~~~F~~~~~~~~~k~~--g~~N~r~LfHGTs~-~~i~~Il~~GF~~~~~~~~~~~fG~---GIYFA~~a~~s~S~ 189 (350)
.|.++-..|...+.++..... ..--+.+.|.-... ..+..|+..|+.... ......|. |+|++..+....+.
T Consensus 2 ~n~~Ls~efse~~~~~~~~~~~~~eL~e~~~fl~~~~~~~~~~v~~~GL~v~~--~k~~~Lg~ps~gv~~~~~~D~~~~~ 79 (165)
T PF12509_consen 2 HNEALSKEFSEKRSSMKREGRSSSELPENYCFLSKESRSQVTSVCQRGLKVGN--QKGTILGKPSMGVYLSRHSDLLESQ 79 (165)
T ss_pred CCHHHHHHHhhhhhhhhhcCCChhhhhhhheeeecccchhhHHHHhccccccc--ccccccCCCCCCcccccCCchhhcc
Confidence 477888888888777754322 12235556654433 567788999999652 24456666 99998554333221
Q ss_pred cccccCCCCcEEEEEEEeecCCceeeCCCC---CCCCCCCCCCcceec
Q 018800 190 KNSAIDREGMRYLLLCRVILGKQEVVHPGS---DQYHPSTGEFESGVD 234 (350)
Q Consensus 190 ~Ys~~d~~G~r~mlLCrVllG~~e~v~p~s---~~~~ps~~~yDSvVd 234 (350)
..- .......+++.+|+-|++..+.+.. +..-++...||+.+.
T Consensus 80 ~~~--~~~~~~~ii~~kv~~~k~k~i~~~~~~~~~~~~p~p~~d~h~~ 125 (165)
T PF12509_consen 80 PFI--CSSANGEIIIFKVLKGKVKKISDSNGSTQSFLDPTPSYDCHVS 125 (165)
T ss_pred hhh--hcCCCCceeEEeeccCcccccccccccccccCCCcccHHHHhh
Confidence 111 1112346899999999998776554 334455678999874
No 14
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=78.53 E-value=3.1 Score=29.13 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=38.0
Q ss_pred cchHHHHHHHHc---C-CChhhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 018800 285 MPFPILISALSK---F-LPPPTVALMSKYYRDHKGKKVSRHELIQRVRQ 329 (350)
Q Consensus 285 ~~f~~L~~~l~~---~-l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~ 329 (350)
|++..|..+|++ . +++.+.+.|...++.=+.|+|+-+||+..|+.
T Consensus 5 i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 5 ITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp EEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred ECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 566677777755 3 88999999999999999999999999998864
No 15
>PF15633 Tox-ART-HYD1: HYD1 signature containing ADP-ribosyltransferase
Probab=72.55 E-value=2.4 Score=34.66 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=29.8
Q ss_pred eeeccChhhHHHHHhhcCCC-CCCCCCCCcccceeeeCCCC
Q 018800 144 AWYAGTKDEICKIIEHGFGY-CGKPSNNGMYGCGVYLSPDD 183 (350)
Q Consensus 144 LfHGTs~~~i~~Il~~GF~~-~~~~~~~~~fG~GIYFA~~a 183 (350)
+||=|+.....+|++.|--. ...+... .||.|.||++.+
T Consensus 1 lyHYTs~~G~n~I~~s~~i~~~a~~p~~-~~~~g~y~t~~a 40 (96)
T PF15633_consen 1 LYHYTSEKGYNGILESGIIKLKANNPKD-RFGQGQYFTDIA 40 (96)
T ss_pred CccccchhhhHHhhccceEEeccCCccc-cCCCceEEEecC
Confidence 58999999999999888554 2223334 899999999754
No 16
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=71.86 E-value=9.9 Score=26.29 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhh
Q 018800 301 PTVALMSKYYRDHKGKKVSRHELIQRVRQIAGD 333 (350)
Q Consensus 301 ~~~~~i~~~y~~~k~~ki~r~~~v~~~r~ivGd 333 (350)
..-+...+....|++++|++.++++.|..+.+|
T Consensus 2 ~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~ 34 (47)
T PF02671_consen 2 EVYNEFLKILNDYKKGRISRSEVIEEVSELLRG 34 (47)
T ss_dssp HHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHcc
Confidence 344566778889999999999999999999974
No 17
>PF13151 DUF3990: Protein of unknown function (DUF3990)
Probab=68.51 E-value=2.4 Score=37.43 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHH
Q 018800 304 ALMSKYYRDHKGKKVSRHELIQRVRQ 329 (350)
Q Consensus 304 ~~i~~~y~~~k~~ki~r~~~v~~~r~ 329 (350)
+.+....+.|..|.||++++++.||.
T Consensus 108 d~v~~~i~~y~~g~is~e~~~~~L~~ 133 (154)
T PF13151_consen 108 DRVFQTINLYINGEISKEQALERLKF 133 (154)
T ss_pred ChHHHHHHHHHcCCCCHHHHHHHhcc
Confidence 35556777888899999999999984
No 18
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=64.72 E-value=1.5 Score=49.99 Aligned_cols=99 Identities=5% Similarity=-0.149 Sum_probs=62.9
Q ss_pred EEEEEEeccCCcccHHHHHHHHHHHHHHHHHcCCCCceeEeeeccChhhHHHHHhhcCCCCCCCCCCCcccceeeeCCCC
Q 018800 104 IVSIHRNSFSGVMGQAKIQSFQIFAKAVAQKCGGDANVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPDD 183 (350)
Q Consensus 104 I~~I~RI~~~~~~n~~r~~~F~~~~~~~~~k~~g~~N~r~LfHGTs~~~i~~Il~~GF~~~~~~~~~~~fG~GIYFA~~a 183 (350)
+.+++++ .++..|+.+....+......--..++..+||+... +..+.-.+|+.+.. +.++++|.|+||+..+
T Consensus 1000 ~~r~~~~-----~~~~~~e~~~~~~~~~~e~~~~~~~~~~~f~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~ 1071 (1143)
T KOG4177|consen 1000 SARFWLV-----DCRKTREAVTHATQLYNELIFVYMAKFVVFAKSNF--PNEGRLRCFCMTDD-KVDKTLEQQEYFAEVA 1071 (1143)
T ss_pred hhHhhhh-----hcchhhhhhhHHHHHHHHHHHHHHHHHhhhccCCc--chhhccccccccCC-ccCcchhhHHHHHHhh
Confidence 3444555 56666776654443332211113577889999763 45556678988753 5788999999999988
Q ss_pred CCCcCCccc--------ccCC------CCcEEEEEEEeecCCc
Q 018800 184 SPLECVKNS--------AIDR------EGMRYLLLCRVILGKQ 212 (350)
Q Consensus 184 ~~s~S~~Ys--------~~d~------~G~r~mlLCrVllG~~ 212 (350)
... +.|- .+.. ...+++.+|+|-+|..
T Consensus 1072 ~~~--d~~v~~~~~~~~~~~~n~~p~~~~~~ql~~~~~~~~~~ 1112 (1143)
T KOG4177|consen 1072 RSR--DIEVLGGKGGFAEPSGNDVPLTKAGQQLSFCFVPFLEN 1112 (1143)
T ss_pred hhh--hhhhhccccceecccCccccceeccceeEEeeehhhhh
Confidence 543 4431 1111 1238899999999986
No 19
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=56.47 E-value=29 Score=28.93 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=42.4
Q ss_pred chHHHHHHHHcCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 018800 286 PFPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAG 332 (350)
Q Consensus 286 ~f~~L~~~l~~~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~ivG 332 (350)
.+--++--+++.+++.+.+.+...-++|++|+|+....+..||..+-
T Consensus 54 vl~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~~~~ 100 (117)
T PF08349_consen 54 VLQHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKHLAR 100 (117)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 55556778999999999999999999999999999999999998873
No 20
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=55.00 E-value=9.4 Score=34.62 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=27.4
Q ss_pred ceeEeeeccChhhHHHHHhhcCCCCCCCCCCCcccceeeeCCC
Q 018800 140 NVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPD 182 (350)
Q Consensus 140 N~r~LfHGTs~~~i~~Il~~GF~~~~~~~~~~~fG~GIYFA~~ 182 (350)
....|||||...++..|.+.|+.... -.=|+||+.
T Consensus 93 ~P~~lyHGT~~~~~~~I~~~GL~pm~--------R~hVHLs~~ 127 (179)
T PRK00819 93 PPAVLYHGTSSEELDSILEEGLKPMK--------RHYVHLSTD 127 (179)
T ss_pred CCceeEeCCCHHHHHHHHHhCCCccC--------CCeEEecCC
Confidence 35689999999999999999987532 224888864
No 21
>PHA01748 hypothetical protein
Probab=54.80 E-value=32 Score=25.43 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=38.9
Q ss_pred HcCCChhhHHHHHHHHHHHhcCCCCHHHHHHHH-HHHhhhHHHHHHHHHhhhh
Q 018800 295 SKFLPPPTVALMSKYYRDHKGKKVSRHELIQRV-RQIAGDQLLIAVIKSYRAK 346 (350)
Q Consensus 295 ~~~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~-r~ivGd~~L~~~i~~~~~~ 346 (350)
+=.||++-++.|..+.++. .++|.++|+.. |..+.+.+...++..+|.+
T Consensus 6 SvrLp~el~~eld~~a~~~---g~~RSE~Ir~Ai~~~~~~~~~~~~~~~~~~~ 55 (60)
T PHA01748 6 TFKIEEDLLELLDRYAIKH---GLNRSEAIRKAIEKMVKDELKKETVPVAKVE 55 (60)
T ss_pred EEECCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 3357777777777766655 37999999875 9999999999999998875
No 22
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=54.13 E-value=32 Score=21.96 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 018800 304 ALMSKYYRDHKGKKVSRHELIQRVRQIAG 332 (350)
Q Consensus 304 ~~i~~~y~~~k~~ki~r~~~v~~~r~ivG 332 (350)
+.|.++-+.+.+|-||.+||-++-+.|.+
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~ll~ 31 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARLLS 31 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 45667777788999999999999887753
No 23
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=54.00 E-value=12 Score=23.37 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 018800 302 TVALMSKYYRDHKGKKVSRHELIQRVRQ 329 (350)
Q Consensus 302 ~~~~i~~~y~~~k~~ki~r~~~v~~~r~ 329 (350)
++..+.+.|+.=+.|+|+.+||.+.|++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 3567788888889999999999999985
No 24
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=52.63 E-value=11 Score=34.35 Aligned_cols=35 Identities=17% Similarity=0.062 Sum_probs=22.3
Q ss_pred ceeEeeeccChhhHHHHHhhcCCCCCCCCCCCcccceeeeCCC
Q 018800 140 NVKYAWYAGTKDEICKIIEHGFGYCGKPSNNGMYGCGVYLSPD 182 (350)
Q Consensus 140 N~r~LfHGTs~~~i~~Il~~GF~~~~~~~~~~~fG~GIYFA~~ 182 (350)
....++|||...++..|+..|+... -..-|+||+.
T Consensus 104 ~p~~lyHGT~~~~~~~I~~~GL~~m--------~R~hVHls~~ 138 (186)
T PF01885_consen 104 PPPILYHGTYRKAWPSILEEGLKPM--------GRNHVHLSTG 138 (186)
T ss_dssp --SEEEE--BGGGHHHHHHH-B-----------SSSSEEEES-
T ss_pred CCCEEEEccchhhHHHHHHhCCCCC--------CCCEEEEeec
Confidence 4579999999999999999997652 2345899976
No 25
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=50.52 E-value=25 Score=25.98 Aligned_cols=50 Identities=28% Similarity=0.358 Sum_probs=36.2
Q ss_pred CChhhHHHHHHHHHHHhcCCCCHHHHHHHHHH----HhhhHHHHHHHHHhhhhcc
Q 018800 298 LPPPTVALMSKYYRDHKGKKVSRHELIQRVRQ----IAGDQLLIAVIKSYRAKVH 348 (350)
Q Consensus 298 l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~----ivGd~~L~~~i~~~~~~~~ 348 (350)
|.+.++. |..++-.-+..-+||++++..+-. .+.++.|..+|.+||.++.
T Consensus 6 Lt~~e~~-lL~~L~~~~~~~vs~~~l~~~lw~~~~~~~~~~~l~~~i~~LR~~l~ 59 (78)
T smart00862 6 LTPKEFR-LLELLLRNPGRVVSREELLEAVWGDDDDDVDDNTLDVHISRLRKKLE 59 (78)
T ss_pred cCHHHHH-HHHHHHhCCCCccCHHHHHHHHcCCCCCCCccchHHHHHHHHHHHHh
Confidence 4566666 445555555667999999998764 3447889999999998863
No 26
>PTZ00184 calmodulin; Provisional
Probab=50.15 E-value=40 Score=27.68 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=42.9
Q ss_pred CCCcchHHHHHHHHcCCC----hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH---hhhHHHHHHHHHh
Q 018800 282 SPWMPFPILISALSKFLP----PPTVALMSKYYRDHKGKKVSRHELIQRVRQI---AGDQLLIAVIKSY 343 (350)
Q Consensus 282 sp~~~f~~L~~~l~~~l~----~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~i---vGd~~L~~~i~~~ 343 (350)
.-.++|..+...+...++ ..++..+.+.|+.-+.+.|++++|.+.++.+ +-+..+..++..+
T Consensus 61 ~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (149)
T PTZ00184 61 NGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREA 129 (149)
T ss_pred CCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhc
Confidence 445788888887776543 3455666666666688999999999999885 1255566655544
No 27
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=49.17 E-value=34 Score=27.00 Aligned_cols=49 Identities=14% Similarity=0.063 Sum_probs=32.4
Q ss_pred CCCcchHHHHHHHHcC-CChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 018800 282 SPWMPFPILISALSKF-LPPPTVALMSKYYRDHKGKKVSRHELIQRVRQI 330 (350)
Q Consensus 282 sp~~~f~~L~~~l~~~-l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~i 330 (350)
.-.+++..|-.+++.. ++...+..+.+.++.-..+.|+.+||+..++.+
T Consensus 24 ~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 24 DGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 3356677776666553 455556666666665567889999998877654
No 28
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=48.47 E-value=49 Score=26.01 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=23.1
Q ss_pred HHHHHHHHHHH-h----cCCCCHHHHHHHHHHHhhh
Q 018800 303 VALMSKYYRDH-K----GKKVSRHELIQRVRQIAGD 333 (350)
Q Consensus 303 ~~~i~~~y~~~-k----~~ki~r~~~v~~~r~ivGd 333 (350)
+..|...|..| + .|+|+++||.+.|+...|+
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~ 42 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSE 42 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHH
Confidence 55566666666 2 3799999999999986554
No 29
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=47.95 E-value=21 Score=27.52 Aligned_cols=50 Identities=24% Similarity=0.360 Sum_probs=34.5
Q ss_pred CChhhHHHHHHHHHHHhcCCCCHHHHHHHHHH---HhhhHHHHHHHHHhhhhcc
Q 018800 298 LPPPTVALMSKYYRDHKGKKVSRHELIQRVRQ---IAGDQLLIAVIKSYRAKVH 348 (350)
Q Consensus 298 l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~---ivGd~~L~~~i~~~~~~~~ 348 (350)
|.+..+.+|.-+ -.-...-+||++++..+-. .+.+..|...|.+||.|+.
T Consensus 24 Lt~~e~~lL~~L-~~~~~~~vs~~~l~~~lw~~~~~~~~~~l~~~I~rLRkkl~ 76 (95)
T cd00383 24 LTPKEFELLELL-ARNPGRVLSREQLLEAVWGDDYDVDDRTVDVHISRLRKKLE 76 (95)
T ss_pred eCHHHHHHHHHH-HhCCCCcCCHHHHHHHhcCCCCCCCcccHHHHHHHHHHHhc
Confidence 344444444433 3345677899999998843 2578889999999998864
No 30
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=47.59 E-value=73 Score=24.03 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhHHHHHHH
Q 018800 303 VALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVI 340 (350)
Q Consensus 303 ~~~i~~~y~~~k~~ki~r~~~v~~~r~ivGd~~L~~~i 340 (350)
-+.|...-+-|++|+|+=+.|+|.+|...-++-+.-+.
T Consensus 25 eDtiy~L~~al~~g~I~~d~~lK~vR~LaReQF~~Ral 62 (65)
T PF09454_consen 25 EDTIYYLDRALQRGSIDLDTFLKQVRSLAREQFLKRAL 62 (65)
T ss_dssp HHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666788999999999999999999988776654
No 31
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=45.46 E-value=16 Score=33.99 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=22.5
Q ss_pred CCceeEeeeccChhhHHHHHhhcCCC
Q 018800 138 DANVKYAWYAGTKDEICKIIEHGFGY 163 (350)
Q Consensus 138 ~~N~r~LfHGTs~~~i~~Il~~GF~~ 163 (350)
......|||||+.+++..|+++|+..
T Consensus 117 ~~~p~~LyhGTs~~~l~~I~~~Gi~P 142 (211)
T COG1859 117 AEPPAVLYHGTSPEFLPSILEEGLKP 142 (211)
T ss_pred CCCCcEEEecCChhhhHHHHHhcCcc
Confidence 34567899999999999999999765
No 32
>cd01436 Dipth_tox_like Mono-ADP-ribosylating toxins catalyze the transfer of ADP_ribose from NAD+ to eukaryotic Elongation Factor 2, halting protein synthesis. A single molecule of delivered toxin is sufficient to kill a cell. These toxins share mono-ADP-ribosylating activity with a variety of bacterial toxins, such as cholera toxin and pertussis toxin. The structural core is homologous to the poly-ADP ribosylating enzymes such as the PARP enzymes and Tankyrase. Diphtheria toxin is encoded by a lysogenic bacteriophage. Both diphtheria toxin and Pseudomonas aeruginosa exotoxin A are multi-domain proteins. These domains provide a EF2 ADP_ribosylating, receptor-binding, and intracellular trafficking/transmembrane functions .
Probab=44.41 E-value=23 Score=30.30 Aligned_cols=50 Identities=10% Similarity=0.155 Sum_probs=35.9
Q ss_pred eeeccChhhHHHHHhhcCCCCCCCCC---CCcccceeeeCCCCCCCcCCcccccCCC
Q 018800 144 AWYAGTKDEICKIIEHGFGYCGKPSN---NGMYGCGVYLSPDDSPLECVKNSAIDRE 197 (350)
Q Consensus 144 LfHGTs~~~i~~Il~~GF~~~~~~~~---~~~fG~GIYFA~~a~~s~S~~Ys~~d~~ 197 (350)
.||||....+.+|.. |...+..+.+ ...| +|.|-|.+. ..+++|+.-.++
T Consensus 2 ~YHGT~~~~~~sI~~-gI~~~~~g~~~~~d~~W-~GfY~a~~~--~~A~GYa~d~E~ 54 (147)
T cd01436 2 SYHGTKPGYVDSIQK-GIQKPKSGTQGNYDDDW-KGFYSTDNK--YDAAGYSVDNEN 54 (147)
T ss_pred CccccchHHHHHHHh-hccCCCCCCCcchhhhh-cceeecCCH--hhhcceeeccCC
Confidence 489999999999987 8776654332 2223 499999887 566889865444
No 33
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=44.40 E-value=14 Score=23.12 Aligned_cols=27 Identities=7% Similarity=0.150 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 018800 303 VALMSKYYRDHKGKKVSRHELIQRVRQ 329 (350)
Q Consensus 303 ~~~i~~~y~~~k~~ki~r~~~v~~~r~ 329 (350)
+..+.+.|+.=+.|+|+.+||...|+.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 345666677778899999999999875
No 34
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=42.72 E-value=49 Score=22.02 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=26.3
Q ss_pred CcchHHHHHHHHcCCChhhHHHHHHHHHHH---hcCCCCHHHHHHHH
Q 018800 284 WMPFPILISALSKFLPPPTVALMSKYYRDH---KGKKVSRHELIQRV 327 (350)
Q Consensus 284 ~~~f~~L~~~l~~~l~~~~~~~i~~~y~~~---k~~ki~r~~~v~~~ 327 (350)
.+++..+..++...-.+..-..+...++.+ +.+.|+-+||+..+
T Consensus 16 ~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 16 TISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 355666666666554444444444455555 56788888887654
No 35
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=42.29 E-value=87 Score=23.99 Aligned_cols=42 Identities=12% Similarity=0.236 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHhh--------hHHHHHHHHHh
Q 018800 302 TVALMSKYYRDHKG-----KKVSRHELIQRVRQIAG--------DQLLIAVIKSY 343 (350)
Q Consensus 302 ~~~~i~~~y~~~k~-----~ki~r~~~v~~~r~ivG--------d~~L~~~i~~~ 343 (350)
++..+...|..|-+ |.|+.++|.+.++...| ++-+..+++.+
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~ 60 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDL 60 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHh
Confidence 44555555555544 89999999999987545 45555555544
No 36
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=42.08 E-value=69 Score=25.21 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=32.1
Q ss_pred CChhhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHhh--hHHHHHHHHHh
Q 018800 298 LPPPTVALMSKYYRDH---KGKKVSRHELIQRVRQIAG--DQLLIAVIKSY 343 (350)
Q Consensus 298 l~~~~~~~i~~~y~~~---k~~ki~r~~~v~~~r~ivG--d~~L~~~i~~~ 343 (350)
+++++...+...|..| +.|.|+.++|.+.||.. | ...+..+++.+
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~~~~~ev~~i~~~~ 53 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-GLPQTLLAKIWNLA 53 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-CCCHHHHHHHHHHh
Confidence 4566777777777776 56899999999999984 5 44555555443
No 37
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=38.07 E-value=33 Score=25.34 Aligned_cols=50 Identities=30% Similarity=0.387 Sum_probs=37.2
Q ss_pred CChhhHHHHHHHHHHHhcCCCCHHHHHHHHHH---HhhhHHHHHHHHHhhhhcc
Q 018800 298 LPPPTVALMSKYYRDHKGKKVSRHELIQRVRQ---IAGDQLLIAVIKSYRAKVH 348 (350)
Q Consensus 298 l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~---ivGd~~L~~~i~~~~~~~~ 348 (350)
|++....+|.-.. .-...-+||++++..+=. -+.++-|...|.+||.|+.
T Consensus 6 Lt~~e~~lL~~L~-~~~~~~vs~~~l~~~~w~~~~~~~~~~l~~~I~rLR~kL~ 58 (77)
T PF00486_consen 6 LTPKEFRLLELLL-RNPGRVVSREELIEALWGDEEDVSDNSLDVHISRLRKKLE 58 (77)
T ss_dssp SSHHHHHHHHHHH-HTTTSEEEHHHHHHHHTSSSSTTCTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH-hCCCCCCCHHHhCChhhhcccccchhhHHHHHHHHHHHHh
Confidence 5566666665444 345566899999998865 3679999999999999864
No 38
>PTZ00183 centrin; Provisional
Probab=37.97 E-value=74 Score=26.52 Aligned_cols=59 Identities=19% Similarity=0.289 Sum_probs=36.5
Q ss_pred cchHHHHHHHHc----CCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH---hhhHHHHHHHHHh
Q 018800 285 MPFPILISALSK----FLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQI---AGDQLLIAVIKSY 343 (350)
Q Consensus 285 ~~f~~L~~~l~~----~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~i---vGd~~L~~~i~~~ 343 (350)
++|..++.++.. ..+..++..+.+.|+.=..|.|++++|...++.. +-+.-+..++..+
T Consensus 70 i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~ 135 (158)
T PTZ00183 70 IDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEA 135 (158)
T ss_pred EeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 556655555443 2344566666777776677889999998888764 1244455555444
No 39
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=36.67 E-value=1.2e+02 Score=23.77 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHhhhH
Q 018800 302 TVALMSKYYRDHK-----GKKVSRHELIQRVRQIAGDQ 334 (350)
Q Consensus 302 ~~~~i~~~y~~~k-----~~ki~r~~~v~~~r~ivGd~ 334 (350)
.+..|...|.++- +++|++++|.+.|+...|+.
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~ 43 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNF 43 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHh
Confidence 4556666677776 45899999999998777753
No 40
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=36.61 E-value=69 Score=25.00 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=21.1
Q ss_pred HHHHHHHHH-HHhcC-CCCHHHHHHHHHHHhhh
Q 018800 303 VALMSKYYR-DHKGK-KVSRHELIQRVRQIAGD 333 (350)
Q Consensus 303 ~~~i~~~y~-~~k~~-ki~r~~~v~~~r~ivGd 333 (350)
+..+.+.|+ .-..| +|++++|.+.||...|+
T Consensus 11 l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~ 43 (92)
T cd05025 11 LINVFHAHSGKEGDKYKLSKKELKDLLQTELSD 43 (92)
T ss_pred HHHHHHHHhcccCCCCeECHHHHHHHHHHHHHH
Confidence 334444443 44567 59999999999986565
No 41
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=36.22 E-value=85 Score=28.02 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=43.8
Q ss_pred CCCCcchHHHHHHHHcCC-ChhhHHHHHHHHHHH---hcCCCCHHHHHHHHHHHhhhHHHHHHHHHh
Q 018800 281 TSPWMPFPILISALSKFL-PPPTVALMSKYYRDH---KGKKVSRHELIQRVRQIAGDQLLIAVIKSY 343 (350)
Q Consensus 281 ~sp~~~f~~L~~~l~~~l-~~~~~~~i~~~y~~~---k~~ki~r~~~v~~~r~ivGd~~L~~~i~~~ 343 (350)
....|.|+.++.+|+..+ -.+.-+-|...++.| ..|+|+..+|++.|. -.|+++.-+-+.++
T Consensus 68 ~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~-~lge~~~deev~~l 133 (160)
T COG5126 68 GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLK-SLGERLSDEEVEKL 133 (160)
T ss_pred CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHH-hhcccCCHHHHHHH
Confidence 357799999999999998 334455666666666 458999999998887 45665555444443
No 42
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=33.97 E-value=1e+02 Score=21.67 Aligned_cols=47 Identities=21% Similarity=0.162 Sum_probs=31.0
Q ss_pred cchHHHHHHHHc-CCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 018800 285 MPFPILISALSK-FLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIA 331 (350)
Q Consensus 285 ~~f~~L~~~l~~-~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~iv 331 (350)
++...|..+++. .++...+..+.+.++.=..|+|+-+||+..+..|.
T Consensus 16 i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 16 ISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 455555555543 24555566666666655678999999998887664
No 43
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=32.42 E-value=33 Score=19.03 Aligned_cols=25 Identities=8% Similarity=0.142 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHH
Q 018800 305 LMSKYYRDHKGKKVSRHELIQRVRQ 329 (350)
Q Consensus 305 ~i~~~y~~~k~~ki~r~~~v~~~r~ 329 (350)
.+.+.++.-..+.|+.++|...++.
T Consensus 4 ~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 4 EAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3445555555678999999988875
No 44
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=30.31 E-value=54 Score=28.73 Aligned_cols=49 Identities=20% Similarity=0.392 Sum_probs=36.1
Q ss_pred CChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH---hhhHHHHHHHHHhhhhc
Q 018800 298 LPPPTVALMSKYYRDHKGKKVSRHELIQRVRQI---AGDQLLIAVIKSYRAKV 347 (350)
Q Consensus 298 l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~i---vGd~~L~~~i~~~~~~~ 347 (350)
|.+.+.+++.-.. .....-+||+++.+.+-.. ..++.|...|.+||.|+
T Consensus 160 Lt~~E~~ll~~l~-~~~~~v~sr~~l~~~v~~~~~~~~~~~~~~~i~~LR~Kl 211 (221)
T PRK10766 160 LTKAEYELLVAFV-TNPGQVLSRERLLRMLSHRVENPNDRTIDVLIRRLRHKL 211 (221)
T ss_pred CCHHHHHHHHHHH-HCCCceEcHHHHHHHhcCCCCCCCCccHHHHHHHHHHhC
Confidence 4456666554433 3566677999999999753 35789999999999997
No 45
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=29.29 E-value=59 Score=29.07 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=34.0
Q ss_pred ChhhHHHHHHHHHHHhcCCCCHHHHHHHHHH--Hh-hhHHHHHHHHHhhhhcc
Q 018800 299 PPPTVALMSKYYRDHKGKKVSRHELIQRVRQ--IA-GDQLLIAVIKSYRAKVH 348 (350)
Q Consensus 299 ~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~--iv-Gd~~L~~~i~~~~~~~~ 348 (350)
.+....+|.... .....-+||+++.+.+.. .. +|+.|...|++||.|+.
T Consensus 163 t~~E~~lL~~l~-~~~~~v~sr~~l~~~vw~~~~~~~~~~i~~~i~rlR~kl~ 214 (240)
T PRK10701 163 STADFDLLWELA-THAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLL 214 (240)
T ss_pred CHHHHHHHHHHH-hCCCccCcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHhcc
Confidence 445555554332 233344699999999975 33 48999999999999974
No 46
>COG3710 CadC DNA-binding winged-HTH domains [Transcription]
Probab=28.46 E-value=50 Score=28.87 Aligned_cols=49 Identities=29% Similarity=0.380 Sum_probs=39.5
Q ss_pred CCChhhHHHHHHHHHHHhcCCCCHHHHHHHH--HHHhhhHHHHHHHHHhhhh
Q 018800 297 FLPPPTVALMSKYYRDHKGKKVSRHELIQRV--RQIAGDQLLIAVIKSYRAK 346 (350)
Q Consensus 297 ~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~--r~ivGd~~L~~~i~~~~~~ 346 (350)
.|++..+++|.-+++ ....=|||+||+..| +.+|.|.-|...|..||.-
T Consensus 31 ~l~~~~~~lL~~L~e-~~geVvsk~eL~~~VW~~~~v~~~~Ltq~I~~LRr~ 81 (148)
T COG3710 31 KLGPRELKLLSLLLE-RAGEVVSKDELLDAVWPGRIVTVNTLTQAISALRRA 81 (148)
T ss_pred EecHHHHHHHHHHHh-ccCceecHHHHHHHhCCCceEccChHHHHHHHHHHH
Confidence 567778888888887 555568999999988 6677777899999999863
No 47
>PRK02998 prsA peptidylprolyl isomerase; Reviewed
Probab=28.36 E-value=71 Score=30.69 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=26.5
Q ss_pred HHHhcCCCCHHHHHHHHHHHhhhHHHHHHHH
Q 018800 311 RDHKGKKVSRHELIQRVRQIAGDQLLIAVIK 341 (350)
Q Consensus 311 ~~~k~~ki~r~~~v~~~r~ivGd~~L~~~i~ 341 (350)
...+.|+||++||.+.|+.-.|.++|...|.
T Consensus 29 ~~~~~g~it~~e~~~~~~~~~g~~~l~~li~ 59 (283)
T PRK02998 29 VTSKVGNITEKELSKELRQKYGESTLYQMVL 59 (283)
T ss_pred EEecCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999988888543
No 48
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=27.90 E-value=1.1e+02 Score=24.09 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=36.4
Q ss_pred CcchHHHHHHHH------cCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 018800 284 WMPFPILISALS------KFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIA 331 (350)
Q Consensus 284 ~~~f~~L~~~l~------~~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~iv 331 (350)
.++...|..+|+ ..+++++.+.+.+..+.=..|+|+-++|++.|..++
T Consensus 28 ~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 28 TLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred EECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 566777777774 346777777777777777889999999998877653
No 49
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=27.88 E-value=54 Score=33.00 Aligned_cols=58 Identities=31% Similarity=0.459 Sum_probs=36.7
Q ss_pred CCCCcccccc--eEEeeCCC--c-ceeEE---eeCCCcceeeccccccccccC---cCCCCcccCCCCCCCC
Q 018800 1 MANTNEITHG--FSILASNN--L-TKHTL---VSPSKQTISFNSDVDTTHYDE---DESSSTVSDCESSVSG 61 (350)
Q Consensus 1 ~~~~~~~~~~--~~~~~~~~--~-~~~~~---~~~~~~~~~~~s~~~~~~~~~---~~~~~~~~~~~~~~~~ 61 (350)
|||.-+-||+ |+||+..- | -+|.| ||--.++- -.||=+..++ ....+...||++....
T Consensus 113 MAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VV---r~IEn~~~d~~skP~~dV~I~dCGel~~~ 181 (372)
T KOG0546|consen 113 MANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVV---REIENLETDEESKPLADVVISDCGELVKK 181 (372)
T ss_pred hhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeechhHH---HHHhccccccCCCCccceEeccccccccc
Confidence 8999988987 99985444 4 68888 77655542 2233322222 2334577799996665
No 50
>PRK09108 type III secretion system protein HrcU; Validated
Probab=26.86 E-value=1.2e+02 Score=30.40 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=48.9
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhHHHHHHHHHhhhhc
Q 018800 290 LISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAKV 347 (350)
Q Consensus 290 L~~~l~~~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~ivGd~~L~~~i~~~~~~~ 347 (350)
++..+-=.+.-.-.|.+...|.-.|+-|+||+|.=+-.++-=||-.+++-++++|.++
T Consensus 189 ~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvK~E~K~~EGdP~iK~rrRq~~re~ 246 (353)
T PRK09108 189 LAVAAGVFLLVGAADWKIQRWLFIRDNRMSKDEVKREHKESEGDPHIKGERKRLAREL 246 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3333344455678899999999999999999999999999999999999999998753
No 51
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=26.79 E-value=84 Score=24.84 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=35.3
Q ss_pred CcchHHHHHHHHcCCC--------hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHh
Q 018800 284 WMPFPILISALSKFLP--------PPTVALMSKYYRDHKGKKVSRHELIQRVRQIA 331 (350)
Q Consensus 284 ~~~f~~L~~~l~~~l~--------~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~iv 331 (350)
.++...|-..+.+.+| +..++.+.+..+.=+.|+|+=+||++.|..++
T Consensus 27 ~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 27 QLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred eECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 5677777777777654 45566666666555779999999999887764
No 52
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=26.27 E-value=94 Score=24.28 Aligned_cols=49 Identities=10% Similarity=0.042 Sum_probs=34.4
Q ss_pred CCCcchHHHHHHHHcCC----C----hhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 018800 282 SPWMPFPILISALSKFL----P----PPTVALMSKYYRDHKGKKVSRHELIQRVRQI 330 (350)
Q Consensus 282 sp~~~f~~L~~~l~~~l----~----~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~i 330 (350)
+-+++-..|..+|...+ + ..+++.+.+.++.-+.|+|+-++|++.+..+
T Consensus 24 ~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 24 PDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred cccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34566666766665433 3 5667777777766678999999999877654
No 53
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=26.06 E-value=3e+02 Score=21.52 Aligned_cols=50 Identities=6% Similarity=0.070 Sum_probs=39.0
Q ss_pred HHcCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh-hHHHHHHHHHh
Q 018800 294 LSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAG-DQLLIAVIKSY 343 (350)
Q Consensus 294 l~~~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~ivG-d~~L~~~i~~~ 343 (350)
=+.-++++++..|.+.|..+-.+..+-+|-+..++...+ +..+...+.-+
T Consensus 24 rR~Gfs~~~i~~l~~ayr~l~~~~~~~~~a~~~l~~~~~~~~~v~~~~~Fi 74 (83)
T PF13720_consen 24 RRRGFSKEEISALRRAYRILFRSGLTLEEALEELEEEYPDSPEVREIVDFI 74 (83)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHTSSS-HHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 356688999999999999999999999999999999766 55555555443
No 54
>PTZ00184 calmodulin; Provisional
Probab=25.52 E-value=1.8e+02 Score=23.69 Aligned_cols=49 Identities=6% Similarity=-0.053 Sum_probs=31.7
Q ss_pred CCCcchHHHHHHHHc---CCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 018800 282 SPWMPFPILISALSK---FLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQI 330 (350)
Q Consensus 282 sp~~~f~~L~~~l~~---~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~i 330 (350)
+-.+++..|..+|.. ......+..+.+.++.=..|.|+.++|++.+...
T Consensus 25 ~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 25 DGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred CCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 445666666655543 3444445555555555567899999999998865
No 55
>PTZ00183 centrin; Provisional
Probab=25.21 E-value=83 Score=26.19 Aligned_cols=46 Identities=9% Similarity=0.088 Sum_probs=33.5
Q ss_pred CcchHHHHHHHH---cCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 018800 284 WMPFPILISALS---KFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQ 329 (350)
Q Consensus 284 ~~~f~~L~~~l~---~~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~ 329 (350)
.++...+...+. ..+....+..+...++.=+.|.|+.++|+..|+.
T Consensus 106 ~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 106 KISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 345555555554 4577777777777777667899999999988875
No 56
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=24.83 E-value=1.2e+02 Score=24.03 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=33.3
Q ss_pred CcchHHHHHHHHc----CCCh-hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 018800 284 WMPFPILISALSK----FLPP-PTVALMSKYYRDHKGKKVSRHELIQRVRQIAG 332 (350)
Q Consensus 284 ~~~f~~L~~~l~~----~l~~-~~~~~i~~~y~~~k~~ki~r~~~v~~~r~ivG 332 (350)
.++...|-.+|++ ++.. ..++.+.+..+.=..|+|+=+||++.|..++-
T Consensus 25 ~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~ 78 (89)
T cd05022 25 SLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAK 78 (89)
T ss_pred eECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 4555555555554 4444 56666666666667799999999988876653
No 57
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=24.22 E-value=78 Score=28.19 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=35.5
Q ss_pred CChhhHHHHHHHHHHHhcCCCCHHHHHHHHHH---HhhhHHHHHHHHHhhhhcc
Q 018800 298 LPPPTVALMSKYYRDHKGKKVSRHELIQRVRQ---IAGDQLLIAVIKSYRAKVH 348 (350)
Q Consensus 298 l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~---ivGd~~L~~~i~~~~~~~~ 348 (350)
|.+...++|.- .......-+||+++.+.+.. -.+++.|...|.+||.|+.
T Consensus 162 Lt~~E~~lL~~-L~~~~~~~~sr~~l~~~vw~~~~~~~~~~l~~~i~~LR~kl~ 214 (239)
T PRK09468 162 LTTGEFAVLKA-LVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRLIE 214 (239)
T ss_pred cCHHHHHHHHH-HHhCCCccCcHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHhc
Confidence 44455555543 33456677899999999865 2457889999999999863
No 58
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=24.20 E-value=92 Score=29.96 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=27.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHhhhHHHHHHHH
Q 018800 311 RDHKGKKVSRHELIQRVRQIAGDQLLIAVIK 341 (350)
Q Consensus 311 ~~~k~~ki~r~~~v~~~r~ivGd~~L~~~i~ 341 (350)
.....++||++||.+.|+...|.++|...|.
T Consensus 28 ~~~~~~~IT~~e~~~~~k~~~~~~~L~~~I~ 58 (287)
T PRK03095 28 VTSKAGDITKDEFYEQMKTQAGKQVLNNMVM 58 (287)
T ss_pred EEecCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999888887774
No 59
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=24.16 E-value=1.5e+02 Score=29.71 Aligned_cols=57 Identities=18% Similarity=0.234 Sum_probs=48.8
Q ss_pred HHHHHcCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhHHHHHHHHHhhhhc
Q 018800 291 ISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAKV 347 (350)
Q Consensus 291 ~~~l~~~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~ivGd~~L~~~i~~~~~~~ 347 (350)
+..+--.+.-.-.|.+...|+=.|+-|+||+|.=+-.++-=||-.+++-++++|.++
T Consensus 188 ~~~~~~~~via~~D~~~qr~~~~k~lrMskqEVKdE~K~~EGdP~iK~rrR~~~re~ 244 (347)
T TIGR00328 188 ILVLLLLLVIAVFDYFFQRWQYIKSLKMTKQEVKDELKQSEGDPEVKGRIRQMQREA 244 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 333444456678899999999999999999999999999999999999999999753
No 60
>PTZ00315 2'-phosphotransferase; Provisional
Probab=23.67 E-value=54 Score=35.14 Aligned_cols=33 Identities=9% Similarity=-0.055 Sum_probs=25.2
Q ss_pred eEeeeccChhhHHHHHhhc-CCCCCCCCCCCcccceeeeCCC
Q 018800 142 KYAWYAGTKDEICKIIEHG-FGYCGKPSNNGMYGCGVYLSPD 182 (350)
Q Consensus 142 r~LfHGTs~~~i~~Il~~G-F~~~~~~~~~~~fG~GIYFA~~ 182 (350)
..|||||...++..|++.| +..-. .+ =||||..
T Consensus 477 ~~lyHGT~~~~~~sI~~~G~L~~M~--R~------HVHLs~~ 510 (582)
T PTZ00315 477 PVAVHGTYWSAWKAIQRCGYLSTMT--RQ------HIHFAKG 510 (582)
T ss_pred CeEEeCCcHHHHHHHHHcCCccccC--CC------eEEecCC
Confidence 4799999999999999999 65421 12 3788864
No 61
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=23.47 E-value=1.5e+02 Score=29.64 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=45.9
Q ss_pred cCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhHHHHHHHHHhhhhc
Q 018800 296 KFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAKV 347 (350)
Q Consensus 296 ~~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~ivGd~~L~~~i~~~~~~~ 347 (350)
=.+.-.-.|.+...|.-.|+-|+||+|.=+-.++-=||-.+++-++++|.++
T Consensus 193 ~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~rrR~~~re~ 244 (349)
T PRK12721 193 CYLVFGILDYSFQRYKIMKQLKMSKDDVKQEYKDSEGDPEIKQKRRELQSEI 244 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3345567889999999999999999999999999999999999999998753
No 62
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=23.02 E-value=1.6e+02 Score=29.62 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=48.1
Q ss_pred HHHHcCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhHHHHHHHHHhhhhc
Q 018800 292 SALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAKV 347 (350)
Q Consensus 292 ~~l~~~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~ivGd~~L~~~i~~~~~~~ 347 (350)
..+-=.+.-.-.|.+...|.-.|+-|+||+|.=+-.++-=||-.+++-++++|.++
T Consensus 196 ~~~~~~~via~~D~~~qr~~~~k~lkMskqEVKdE~Ke~EGdP~iK~rrR~~~re~ 251 (359)
T PRK05702 196 LVVLALLVIAAIDVPFQRWQYLKKLKMTKQEVKDEHKQSEGDPEVKGRIRQLQREM 251 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 33344445678899999999999999999999999999999999999999998753
No 63
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=22.66 E-value=53 Score=25.31 Aligned_cols=29 Identities=10% Similarity=0.296 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHhhhHHHHHHHHHhhh
Q 018800 316 KKVSRHELIQRVRQIAGDQLLIAVIKSYRA 345 (350)
Q Consensus 316 ~ki~r~~~v~~~r~ivGd~~L~~~i~~~~~ 345 (350)
+.+||++|.++.=.-+|| +|-+-+.-||.
T Consensus 41 C~ls~edF~~~~p~~~Gd-IL~~hL~~L~k 69 (71)
T cd08533 41 CALGKERFLELAPDFVGD-ILWEHLEILQK 69 (71)
T ss_pred HcCCHHHHHHHcCCCcch-HHHHHHHHHHh
Confidence 679999999998778899 66666666653
No 64
>PRK06298 type III secretion system protein; Validated
Probab=22.59 E-value=1.6e+02 Score=29.54 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=48.6
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhHHHHHHHHHhhhhc
Q 018800 290 LISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAKV 347 (350)
Q Consensus 290 L~~~l~~~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~ivGd~~L~~~i~~~~~~~ 347 (350)
++..+--.+.-.-.|.....|.-.|+-|+||+|.=+-.++-=||-.+++-++++|.++
T Consensus 188 ~~~~~~~~~via~~D~~~qr~~~~k~lkMSkqEvKdE~K~~EGdP~iK~rrR~~~re~ 245 (356)
T PRK06298 188 VTSIGIFFLVVAVLDLVYQRHNFAKELKMEKFEVKQEFKDTEGNPEIKGRRRQIAQEI 245 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3333334445677889999999999999999999999999999999999999998753
No 65
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=22.58 E-value=1.7e+02 Score=29.27 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=47.5
Q ss_pred HHHHcCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhHHHHHHHHHhhhh
Q 018800 292 SALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAK 346 (350)
Q Consensus 292 ~~l~~~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~ivGd~~L~~~i~~~~~~ 346 (350)
..+--.+.-.-.|.+...|+=.|+-|+||+|.=+-.++-=||-.+++-++++|.+
T Consensus 188 ~~~~~~~via~~D~~~qr~~~~k~lkMskqEvKdE~Ke~EGdP~iK~r~R~~~re 242 (342)
T TIGR01404 188 VCLGFFLVVGLADFAFQRYLFMKDLKMSKDEVKREYKEQEGDPEIKSKRRELHQE 242 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 3333444567888999999999999999999999999999999999999999865
No 66
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=21.58 E-value=1e+02 Score=27.85 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=22.3
Q ss_pred cCCCCHHHHHHHHHHHhh-----hHHHHHHHHHhhh
Q 018800 315 GKKVSRHELIQRVRQIAG-----DQLLIAVIKSYRA 345 (350)
Q Consensus 315 ~~ki~r~~~v~~~r~ivG-----d~~L~~~i~~~~~ 345 (350)
++|+|+++||+-+|.+.. +..|..+-.++..
T Consensus 147 ~~kmt~~~Fi~~~~~~~~~~~~~~~~L~~iY~~I~~ 182 (185)
T cd00171 147 KKKMTLEDFIKNLRGINDGEDFPREFLKELYDSIKN 182 (185)
T ss_pred CCCCCHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Confidence 578999999998887654 5666666655544
No 67
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=21.33 E-value=1e+02 Score=30.67 Aligned_cols=57 Identities=12% Similarity=0.229 Sum_probs=43.0
Q ss_pred HHHHHHcCCChhhHHHHHHHHHHHhc----CCC------CHHHHHHHHHHHhhhHHHHHHHHHhhhhc
Q 018800 290 LISALSKFLPPPTVALMSKYYRDHKG----KKV------SRHELIQRVRQIAGDQLLIAVIKSYRAKV 347 (350)
Q Consensus 290 L~~~l~~~l~~~~~~~i~~~y~~~k~----~ki------~r~~~v~~~r~ivGd~~L~~~i~~~~~~~ 347 (350)
.|-.+++.|| .-++.|.++|.++.+ ..| .-+.+++.++.++|+.-..-+|++.+.|+
T Consensus 273 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (342)
T PRK12557 273 HLLEKQKDLD-AALEILENLDEDLLKEIEEAEIKPTTLVAAQALVKEIKTLIGGRAAEGAIRRSMRKL 339 (342)
T ss_pred CcchhhhhHH-HHHHHHHHHHHHHhhccccCccccceecChHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 3344455555 578889999999843 333 44678999999999999999999888764
No 68
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=21.07 E-value=1.8e+02 Score=22.73 Aligned_cols=47 Identities=19% Similarity=0.153 Sum_probs=31.0
Q ss_pred CcchHHHHHHHHcC--------CChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 018800 284 WMPFPILISALSKF--------LPPPTVALMSKYYRDHKGKKVSRHELIQRVRQI 330 (350)
Q Consensus 284 ~~~f~~L~~~l~~~--------l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~i 330 (350)
.++...|..+|+.. ++...++.+.+.++.=..|+|+-++|++.+..+
T Consensus 26 ~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 26 TLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred eECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46777777777652 344445555554444467899999999877643
No 69
>PRK11173 two-component response regulator; Provisional
Probab=20.56 E-value=1.1e+02 Score=27.28 Aligned_cols=50 Identities=24% Similarity=0.358 Sum_probs=35.9
Q ss_pred CChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHH---hhhHHHHHHHHHhhhhcc
Q 018800 298 LPPPTVALMSKYYRDHKGKKVSRHELIQRVRQI---AGDQLLIAVIKSYRAKVH 348 (350)
Q Consensus 298 l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~i---vGd~~L~~~i~~~~~~~~ 348 (350)
|++...++|. ++-.....-+||+++...+... .+++.|...|.+||.|+.
T Consensus 161 Lt~~E~~ll~-~l~~~~g~v~sr~~l~~~vw~~~~~~~~~~~~~~i~rlR~kl~ 213 (237)
T PRK11173 161 LPRSEFRAML-HFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFE 213 (237)
T ss_pred CCHHHHHHHH-HHHhCCCccCcHHHHHHHhcCcCCCCCCccHHHHHHHHHHHhc
Confidence 4455555554 3444456667999999999752 358899999999999874
No 70
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=20.54 E-value=90 Score=24.55 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHhhhHHHHHHHHHhh
Q 018800 316 KKVSRHELIQRVRQIAGDQLLIAVIKSYR 344 (350)
Q Consensus 316 ~ki~r~~~v~~~r~ivGd~~L~~~i~~~~ 344 (350)
+++|+|+|++++=. .|| +|-+.+..++
T Consensus 46 C~ms~eeF~~~~p~-~Gd-vLy~~lq~~~ 72 (78)
T cd08538 46 CSMTQEEFIEAAGI-CGE-YLYFILQNIR 72 (78)
T ss_pred HcCCHHHHHHHccc-chH-HHHHHHHHHH
Confidence 68999999998876 888 6777766654
No 71
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=20.40 E-value=1.7e+02 Score=31.47 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=46.5
Q ss_pred cCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhhHHHHHHHHHhhhhc
Q 018800 296 KFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAGDQLLIAVIKSYRAKV 347 (350)
Q Consensus 296 ~~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~ivGd~~L~~~i~~~~~~~ 347 (350)
=.+.-.-.|.....|+-.|+-|+||+|.=+-.++-=||-.+++-++++|.++
T Consensus 456 ~~~via~~D~~~q~~~~~k~lkMskqEvK~E~Ke~EGdP~iK~r~R~~~re~ 507 (609)
T PRK12772 456 IMIIIAVADYVYQKYQYNKDLRMTKQEVKEEYKQDEGDPQIKAKIKQKQREM 507 (609)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 3345678889999999999999999999999999999999999999999763
No 72
>PRK10167 hypothetical protein; Provisional
Probab=20.03 E-value=2.5e+02 Score=25.25 Aligned_cols=46 Identities=2% Similarity=0.024 Sum_probs=40.4
Q ss_pred hHHHHHHHHcCCChhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHhh
Q 018800 287 FPILISALSKFLPPPTVALMSKYYRDHKGKKVSRHELIQRVRQIAG 332 (350)
Q Consensus 287 f~~L~~~l~~~l~~~~~~~i~~~y~~~k~~ki~r~~~v~~~r~ivG 332 (350)
+--++--+++.+++++.+.+...-++||.|+|+....+-.+|..+-
T Consensus 96 L~Hi~GYFKk~Ls~~EKq~l~~lI~~Yr~g~vpl~vpltlL~h~~~ 141 (169)
T PRK10167 96 LMHVQGYFRPHIDSTERQQLAALIDSYRRGEQPLLAPLMRIKHYMA 141 (169)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4445667899999999999999999999999999999999888774
Done!