Query 018801
Match_columns 350
No_of_seqs 394 out of 1783
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:08:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1039 Predicted E3 ubiquitin 100.0 7.1E-51 1.5E-55 394.5 10.4 302 25-347 1-313 (344)
2 PHA03096 p28-like protein; Pro 100.0 7E-32 1.5E-36 256.9 5.9 139 141-290 130-278 (284)
3 PHA02926 zinc finger-like prot 99.8 1.3E-21 2.9E-26 177.5 5.6 81 183-268 159-239 (242)
4 PHA02929 N1R/p28-like protein; 99.5 2.4E-14 5.3E-19 133.5 6.1 69 188-268 168-236 (238)
5 KOG1040 Polyadenylation factor 99.1 3.3E-11 7.1E-16 117.1 2.9 54 3-56 76-130 (325)
6 PF13639 zf-RING_2: Ring finge 99.0 9.1E-11 2E-15 81.5 2.3 43 196-255 2-44 (44)
7 PF15227 zf-C3HC4_4: zinc fing 98.9 1.3E-09 2.7E-14 75.4 2.9 42 197-254 1-42 (42)
8 PLN03208 E3 ubiquitin-protein 98.8 3.2E-09 6.9E-14 95.9 4.2 69 187-264 11-86 (193)
9 PF13920 zf-C3HC4_3: Zinc fing 98.8 2.7E-09 5.8E-14 76.2 2.8 49 193-261 1-50 (50)
10 PF13923 zf-C3HC4_2: Zinc fing 98.7 9.9E-09 2.1E-13 69.5 2.5 39 197-254 1-39 (39)
11 KOG0823 Predicted E3 ubiquitin 98.7 1.3E-08 2.8E-13 93.7 3.2 57 191-264 44-102 (230)
12 PF12678 zf-rbx1: RING-H2 zinc 98.7 1.9E-08 4.1E-13 77.7 3.4 51 193-255 18-73 (73)
13 cd00162 RING RING-finger (Real 98.6 2.9E-08 6.2E-13 67.4 3.6 44 196-257 1-44 (45)
14 KOG1492 C3H1-type Zn-finger pr 98.6 1.4E-08 3.1E-13 93.0 2.5 57 4-62 206-263 (377)
15 KOG0317 Predicted E3 ubiquitin 98.6 1.8E-08 4E-13 95.3 2.7 48 192-259 237-284 (293)
16 PF00097 zf-C3HC4: Zinc finger 98.6 2.8E-08 6E-13 67.7 2.9 41 197-254 1-41 (41)
17 COG5152 Uncharacterized conser 98.6 2.7E-08 5.8E-13 89.5 2.2 103 131-272 141-250 (259)
18 KOG1763 Uncharacterized conser 98.5 1.5E-08 3.2E-13 95.8 -0.8 56 285-347 154-218 (343)
19 PF12861 zf-Apc11: Anaphase-pr 98.5 1.1E-07 2.4E-12 75.1 3.9 60 193-260 20-83 (85)
20 KOG0320 Predicted E3 ubiquitin 98.4 8.6E-08 1.9E-12 85.0 2.4 49 193-259 130-178 (187)
21 KOG2164 Predicted E3 ubiquitin 98.4 1.6E-07 3.5E-12 95.0 4.4 79 187-283 179-259 (513)
22 COG5084 YTH1 Cleavage and poly 98.4 3.3E-07 7.2E-12 87.6 5.7 55 3-57 103-160 (285)
23 KOG1677 CCCH-type Zn-finger pr 98.4 3.9E-07 8.4E-12 89.1 5.8 95 5-155 87-202 (332)
24 COG5540 RING-finger-containing 98.4 2.4E-07 5.2E-12 88.2 3.5 56 187-258 316-371 (374)
25 TIGR00599 rad18 DNA repair pro 98.4 4.3E-07 9.2E-12 90.9 5.4 68 191-283 23-90 (397)
26 PF14634 zf-RING_5: zinc-RING 98.4 3.2E-07 6.9E-12 63.8 3.0 44 196-256 1-44 (44)
27 KOG4628 Predicted E3 ubiquitin 98.3 2.8E-07 6.1E-12 90.3 2.7 54 195-264 230-283 (348)
28 COG5243 HRD1 HRD ubiquitin lig 98.3 4.3E-07 9.4E-12 88.5 3.5 58 191-260 284-346 (491)
29 smart00504 Ubox Modified RING 98.2 1.3E-06 2.8E-11 64.6 4.1 46 194-259 1-46 (63)
30 KOG1492 C3H1-type Zn-finger pr 98.2 6.6E-07 1.4E-11 82.2 2.9 85 2-158 231-316 (377)
31 KOG1677 CCCH-type Zn-finger pr 98.2 1.2E-06 2.6E-11 85.6 3.9 58 2-59 130-205 (332)
32 smart00184 RING Ring finger. E 98.1 1.7E-06 3.7E-11 56.5 2.8 39 197-254 1-39 (39)
33 COG5574 PEX10 RING-finger-cont 98.1 1.7E-06 3.7E-11 81.2 2.4 49 192-259 213-262 (271)
34 KOG4172 Predicted E3 ubiquitin 98.0 7.6E-07 1.6E-11 64.2 -0.5 51 192-262 5-57 (62)
35 PF13445 zf-RING_UBOX: RING-ty 98.0 4.1E-06 8.9E-11 58.2 2.2 35 197-237 1-35 (43)
36 KOG0287 Postreplication repair 98.0 3.2E-06 7E-11 81.7 2.2 45 195-259 24-68 (442)
37 TIGR00570 cdk7 CDK-activating 98.0 9.2E-06 2E-10 78.6 5.1 54 193-260 2-55 (309)
38 PF00642 zf-CCCH: Zinc finger 98.0 1.8E-06 4E-11 53.9 0.1 24 3-26 2-26 (27)
39 KOG0802 E3 ubiquitin ligase [P 97.9 4.6E-06 1E-10 87.2 2.2 52 190-256 287-338 (543)
40 KOG1763 Uncharacterized conser 97.9 1.2E-06 2.5E-11 83.2 -2.4 56 3-58 91-193 (343)
41 COG5252 Uncharacterized conser 97.9 2.4E-06 5.2E-11 78.8 -0.8 53 288-347 142-203 (299)
42 smart00356 ZnF_C3H1 zinc finge 97.9 9.4E-06 2E-10 50.1 2.1 24 3-26 3-26 (27)
43 PF04564 U-box: U-box domain; 97.8 2.9E-05 6.3E-10 59.8 5.2 66 193-284 3-70 (73)
44 KOG1040 Polyadenylation factor 97.8 1.3E-05 2.9E-10 78.3 3.6 56 1-56 102-158 (325)
45 KOG2177 Predicted E3 ubiquitin 97.8 1.8E-05 3.9E-10 73.4 4.3 70 190-286 9-78 (386)
46 KOG2494 C3H1-type Zn-finger pr 97.8 8.1E-06 1.8E-10 78.7 1.4 53 5-58 38-96 (331)
47 PF14835 zf-RING_6: zf-RING of 97.7 9.3E-06 2E-10 60.8 0.7 44 194-258 7-50 (65)
48 PF11793 FANCL_C: FANCL C-term 97.7 1.1E-05 2.4E-10 61.8 0.7 65 194-259 2-66 (70)
49 COG5194 APC11 Component of SCF 97.6 3.7E-05 7.9E-10 59.8 2.8 55 195-261 21-83 (88)
50 smart00356 ZnF_C3H1 zinc finge 97.6 5.5E-05 1.2E-09 46.5 2.5 25 31-55 3-27 (27)
51 PF00642 zf-CCCH: Zinc finger 97.5 1.1E-05 2.4E-10 50.4 -1.2 25 31-55 2-27 (27)
52 KOG1813 Predicted E3 ubiquitin 97.4 4.6E-05 9.9E-10 72.7 0.4 97 132-260 187-287 (313)
53 COG5432 RAD18 RING-finger-cont 97.3 0.00012 2.6E-09 69.7 2.3 52 195-266 26-78 (391)
54 KOG1493 Anaphase-promoting com 97.2 0.00014 3.1E-09 56.1 1.4 59 193-260 19-82 (84)
55 KOG0978 E3 ubiquitin ligase in 97.1 0.00018 3.8E-09 76.4 0.8 47 194-259 643-689 (698)
56 KOG4791 Uncharacterized conser 97.1 0.0005 1.1E-08 69.4 3.9 52 5-57 4-56 (667)
57 COG5252 Uncharacterized conser 97.0 9.7E-05 2.1E-09 68.4 -1.7 56 3-58 84-178 (299)
58 KOG0804 Cytoplasmic Zn-finger 97.0 0.00026 5.6E-09 71.0 0.9 49 192-259 173-222 (493)
59 KOG0824 Predicted E3 ubiquitin 96.9 0.00037 7.9E-09 66.8 1.6 48 191-259 4-53 (324)
60 KOG0311 Predicted E3 ubiquitin 96.9 0.00012 2.5E-09 71.5 -2.0 48 193-258 42-89 (381)
61 KOG2494 C3H1-type Zn-finger pr 96.8 0.0004 8.7E-09 67.2 1.0 25 32-56 37-62 (331)
62 COG5084 YTH1 Cleavage and poly 96.7 0.003 6.4E-08 60.8 5.9 53 4-56 134-190 (285)
63 COG5063 CTH1 CCCH-type Zn-fing 96.7 0.0025 5.5E-08 61.2 5.2 53 5-57 231-300 (351)
64 KOG0825 PHD Zn-finger protein 96.7 0.00067 1.5E-08 72.0 1.2 69 195-280 124-199 (1134)
65 KOG0828 Predicted E3 ubiquitin 96.4 0.0012 2.6E-08 67.0 1.4 55 193-258 570-633 (636)
66 KOG1595 CCCH-type Zn-finger pr 96.4 0.0045 9.7E-08 63.6 5.4 56 4-62 236-298 (528)
67 KOG4159 Predicted E3 ubiquitin 96.4 0.0022 4.7E-08 64.6 3.2 75 192-287 82-157 (398)
68 KOG4791 Uncharacterized conser 96.4 0.00094 2E-08 67.5 0.5 54 4-59 32-88 (667)
69 KOG1645 RING-finger-containing 96.3 0.0043 9.2E-08 61.9 4.2 54 194-260 4-57 (463)
70 COG5219 Uncharacterized conser 96.2 0.0024 5.1E-08 69.2 1.9 61 188-261 1463-1525(1525)
71 KOG2660 Locus-specific chromos 96.1 0.0024 5.1E-08 62.1 1.4 56 191-265 12-67 (331)
72 KOG0827 Predicted E3 ubiquitin 96.0 0.0032 7E-08 62.3 2.0 51 195-258 5-55 (465)
73 PF14608 zf-CCCH_2: Zinc finge 96.0 0.0039 8.5E-08 35.7 1.5 18 6-25 1-18 (19)
74 KOG1595 CCCH-type Zn-finger pr 95.8 0.0078 1.7E-07 61.9 3.8 52 3-57 200-261 (528)
75 smart00744 RINGv The RING-vari 95.8 0.0093 2E-07 42.5 3.0 44 196-255 1-49 (49)
76 KOG4265 Predicted E3 ubiquitin 95.8 0.0059 1.3E-07 60.0 2.7 46 194-259 290-336 (349)
77 KOG2185 Predicted RNA-processi 95.7 0.0051 1.1E-07 61.3 2.0 25 32-56 140-164 (486)
78 KOG1941 Acetylcholine receptor 95.7 0.0063 1.4E-07 60.4 2.5 51 192-256 363-413 (518)
79 COG5222 Uncharacterized conser 95.6 0.036 7.9E-07 53.4 7.2 110 195-346 275-384 (427)
80 KOG0297 TNF receptor-associate 95.6 0.006 1.3E-07 61.5 1.8 50 191-260 18-68 (391)
81 KOG2930 SCF ubiquitin ligase, 95.5 0.0081 1.8E-07 49.1 1.9 30 220-260 80-109 (114)
82 KOG2333 Uncharacterized conser 95.4 0.0059 1.3E-07 62.2 1.2 53 4-56 76-139 (614)
83 KOG1952 Transcription factor N 95.4 0.014 3E-07 62.9 3.9 62 189-259 186-247 (950)
84 KOG2185 Predicted RNA-processi 95.4 0.0064 1.4E-07 60.5 1.2 26 4-29 140-165 (486)
85 KOG1734 Predicted RING-contain 95.4 0.0039 8.5E-08 59.1 -0.3 65 193-268 223-291 (328)
86 PF11789 zf-Nse: Zinc-finger o 95.2 0.014 3.1E-07 42.9 2.2 46 191-253 8-53 (57)
87 PF14608 zf-CCCH_2: Zinc finge 94.7 0.025 5.3E-07 32.4 1.9 19 34-54 1-19 (19)
88 KOG1785 Tyrosine kinase negati 94.5 0.016 3.4E-07 57.8 1.3 49 194-260 369-417 (563)
89 KOG2879 Predicted E3 ubiquitin 94.2 0.034 7.4E-07 53.0 2.7 53 190-259 235-287 (298)
90 COG5063 CTH1 CCCH-type Zn-fing 94.1 0.15 3.3E-06 49.3 6.8 57 3-59 114-181 (351)
91 KOG1428 Inhibitor of type V ad 94.0 0.031 6.8E-07 63.1 2.3 66 190-262 3482-3547(3738)
92 PF07800 DUF1644: Protein of u 93.6 0.094 2E-06 46.3 4.3 14 247-260 79-92 (162)
93 KOG1002 Nucleotide excision re 93.5 0.029 6.2E-07 57.8 0.9 54 191-259 533-586 (791)
94 KOG1814 Predicted E3 ubiquitin 93.2 0.088 1.9E-06 52.8 3.8 58 193-259 183-240 (445)
95 PF05883 Baculo_RING: Baculovi 92.8 0.052 1.1E-06 46.7 1.4 48 184-237 15-69 (134)
96 PF04641 Rtf2: Rtf2 RING-finge 92.6 0.21 4.6E-06 47.5 5.5 70 192-281 111-182 (260)
97 PF14570 zf-RING_4: RING/Ubox 91.1 0.24 5.2E-06 35.2 2.9 47 197-258 1-47 (48)
98 KOG1812 Predicted E3 ubiquitin 91.0 0.12 2.7E-06 52.0 2.0 55 194-259 146-201 (384)
99 KOG2932 E3 ubiquitin ligase in 90.7 0.079 1.7E-06 51.3 0.3 34 214-260 102-135 (389)
100 KOG3799 Rab3 effector RIM1 and 90.2 0.15 3.2E-06 43.9 1.4 64 192-268 63-127 (169)
101 KOG1039 Predicted E3 ubiquitin 89.7 0.12 2.6E-06 51.2 0.6 25 5-29 9-33 (344)
102 KOG4739 Uncharacterized protei 89.4 0.13 2.9E-06 48.2 0.6 46 195-260 4-49 (233)
103 PF10650 zf-C3H1: Putative zin 89.2 0.22 4.8E-06 29.9 1.2 19 34-53 2-21 (23)
104 COG5152 Uncharacterized conser 88.9 0.15 3.3E-06 46.6 0.6 26 32-57 141-167 (259)
105 KOG4275 Predicted E3 ubiquitin 88.9 0.063 1.4E-06 51.6 -2.0 43 194-260 300-343 (350)
106 PF10272 Tmpp129: Putative tra 88.6 0.3 6.5E-06 48.7 2.5 37 223-259 313-351 (358)
107 PF10650 zf-C3H1: Putative zin 87.8 0.38 8.3E-06 28.9 1.6 20 5-25 1-21 (23)
108 KOG1571 Predicted E3 ubiquitin 87.1 0.24 5.1E-06 49.0 0.7 49 192-263 303-351 (355)
109 KOG4692 Predicted E3 ubiquitin 87.0 0.41 8.9E-06 47.3 2.3 53 190-262 418-470 (489)
110 PF10367 Vps39_2: Vacuolar sor 85.0 0.4 8.6E-06 38.6 1.0 36 189-231 73-108 (109)
111 KOG2333 Uncharacterized conser 85.0 0.35 7.6E-06 49.8 0.7 25 32-56 76-103 (614)
112 KOG4185 Predicted E3 ubiquitin 84.4 0.97 2.1E-05 43.4 3.5 52 194-258 3-54 (296)
113 PHA02825 LAP/PHD finger-like p 84.3 1.2 2.7E-05 39.3 3.8 61 192-269 6-72 (162)
114 KOG4362 Transcriptional regula 81.8 0.8 1.7E-05 49.1 1.9 49 193-258 20-68 (684)
115 KOG1001 Helicase-like transcri 81.4 0.7 1.5E-05 49.9 1.3 46 195-259 455-500 (674)
116 COG5236 Uncharacterized conser 81.4 1.3 2.8E-05 43.8 3.0 55 189-261 56-110 (493)
117 KOG3053 Uncharacterized conser 81.0 0.99 2.2E-05 42.9 2.0 70 192-269 18-92 (293)
118 KOG3039 Uncharacterized conser 80.5 1.6 3.6E-05 41.2 3.2 59 190-264 217-277 (303)
119 PHA02862 5L protein; Provision 80.0 1 2.2E-05 39.3 1.6 48 194-260 2-54 (156)
120 TIGR00622 ssl1 transcription f 79.7 1.2 2.7E-05 37.2 1.9 90 153-255 15-110 (112)
121 KOG1940 Zn-finger protein [Gen 79.2 2 4.4E-05 41.4 3.5 97 189-315 153-255 (276)
122 PF14447 Prok-RING_4: Prokaryo 78.3 1 2.2E-05 32.9 0.9 45 194-260 7-51 (55)
123 PF04423 Rad50_zn_hook: Rad50 78.1 0.68 1.5E-05 33.3 -0.0 27 250-287 22-48 (54)
124 KOG1815 Predicted E3 ubiquitin 77.3 3 6.5E-05 42.8 4.4 42 191-240 67-108 (444)
125 PF08746 zf-RING-like: RING-li 76.4 2.4 5.2E-05 29.2 2.3 40 197-254 1-43 (43)
126 COG5175 MOT2 Transcriptional r 76.2 2.1 4.6E-05 42.2 2.8 52 193-259 13-64 (480)
127 PF12906 RINGv: RING-variant d 75.8 1.9 4.2E-05 30.2 1.8 42 197-254 1-47 (47)
128 KOG0801 Predicted E3 ubiquitin 74.9 0.22 4.7E-06 44.2 -4.0 63 153-225 138-202 (205)
129 KOG0826 Predicted E3 ubiquitin 74.4 1.9 4.2E-05 42.3 2.0 37 193-237 299-335 (357)
130 PF14569 zf-UDP: Zinc-binding 73.7 3.7 8.1E-05 32.1 3.0 59 192-262 7-65 (80)
131 KOG4367 Predicted Zn-finger pr 73.5 1.6 3.6E-05 44.3 1.3 35 192-235 2-36 (699)
132 KOG1813 Predicted E3 ubiquitin 71.3 1.3 2.8E-05 42.9 -0.0 25 33-57 187-212 (313)
133 KOG3002 Zn finger protein [Gen 69.2 4.7 0.0001 39.4 3.3 67 193-296 47-115 (299)
134 COG5220 TFB3 Cdk activating ki 68.7 1.7 3.7E-05 40.9 0.2 55 191-258 7-63 (314)
135 KOG2034 Vacuolar sorting prote 68.4 2.5 5.3E-05 46.5 1.3 36 193-235 816-851 (911)
136 KOG4445 Uncharacterized conser 66.0 2.1 4.6E-05 41.6 0.2 56 193-260 114-187 (368)
137 KOG0298 DEAD box-containing he 64.0 2.4 5.2E-05 48.3 0.2 51 189-258 1148-1198(1394)
138 KOG0153 Predicted RNA-binding 63.8 3.4 7.5E-05 40.9 1.2 24 33-56 162-185 (377)
139 KOG3800 Predicted E3 ubiquitin 63.5 6.6 0.00014 38.0 3.0 50 196-259 2-51 (300)
140 PF02891 zf-MIZ: MIZ/SP-RING z 62.7 3.8 8.1E-05 29.2 1.0 48 195-257 3-50 (50)
141 KOG3268 Predicted E3 ubiquitin 62.0 6.3 0.00014 35.7 2.4 64 195-260 166-229 (234)
142 KOG3970 Predicted E3 ubiquitin 61.3 19 0.00041 33.8 5.5 57 193-259 49-105 (299)
143 KOG0825 PHD Zn-finger protein 58.5 6.4 0.00014 43.0 2.2 56 195-259 97-154 (1134)
144 KOG0153 Predicted RNA-binding 58.2 5.5 0.00012 39.5 1.5 24 4-27 161-184 (377)
145 KOG3899 Uncharacterized conser 57.2 5.7 0.00012 38.6 1.4 38 221-259 325-365 (381)
146 PF04710 Pellino: Pellino; In 54.3 4.2 9.1E-05 41.0 0.0 43 212-264 301-343 (416)
147 KOG2807 RNA polymerase II tran 52.9 9.3 0.0002 37.7 2.1 85 153-255 290-374 (378)
148 PF05290 Baculo_IE-1: Baculovi 49.7 25 0.00055 30.3 4.0 56 189-259 75-132 (140)
149 PF03854 zf-P11: P-11 zinc fin 45.3 9.1 0.0002 27.2 0.6 32 216-259 14-46 (50)
150 PF10571 UPF0547: Uncharacteri 44.6 14 0.0003 22.8 1.3 10 196-205 2-11 (26)
151 KOG2202 U2 snRNP splicing fact 43.6 10 0.00022 36.1 0.8 23 34-56 154-176 (260)
152 smart00647 IBR In Between Ring 41.0 5.1 0.00011 28.9 -1.3 40 195-235 19-60 (64)
153 PLN02189 cellulose synthase 40.7 28 0.00061 39.4 3.7 60 193-264 33-92 (1040)
154 PF07975 C1_4: TFIIH C1-like d 38.5 21 0.00046 25.7 1.6 14 218-231 24-37 (51)
155 PLN02195 cellulose synthase A 37.7 36 0.00078 38.4 3.9 56 192-259 4-59 (977)
156 KOG1356 Putative transcription 36.7 9 0.0002 42.1 -0.8 34 194-234 229-262 (889)
157 PLN02436 cellulose synthase A 36.4 36 0.00078 38.8 3.7 61 192-264 34-94 (1094)
158 KOG1100 Predicted E3 ubiquitin 35.9 16 0.00035 33.8 0.8 40 197-260 161-201 (207)
159 KOG2202 U2 snRNP splicing fact 35.9 18 0.00039 34.5 1.2 25 3-27 151-175 (260)
160 KOG0006 E3 ubiquitin-protein l 33.9 27 0.00058 34.5 2.0 40 193-234 314-355 (446)
161 PF10497 zf-4CXXC_R1: Zinc-fin 31.7 23 0.00051 29.1 1.1 34 222-257 37-70 (105)
162 KOG3702 Nuclear polyadenylated 31.5 45 0.00098 35.9 3.3 49 5-59 586-649 (681)
163 PF06844 DUF1244: Protein of u 30.5 29 0.00064 26.3 1.3 14 224-237 11-24 (68)
164 PLN02638 cellulose synthase A 29.6 52 0.0011 37.6 3.5 65 193-270 16-80 (1079)
165 PLN02915 cellulose synthase A 28.9 42 0.00091 38.1 2.7 66 193-271 14-79 (1044)
166 KOG2114 Vacuolar assembly/sort 28.7 85 0.0018 34.9 4.9 42 195-258 841-882 (933)
167 KOG3161 Predicted E3 ubiquitin 26.2 30 0.00064 37.3 0.9 36 195-235 12-47 (861)
168 PLN02400 cellulose synthase 25.7 55 0.0012 37.4 2.9 77 192-281 34-113 (1085)
169 PF14353 CpXC: CpXC protein 25.2 49 0.0011 27.7 1.9 31 249-279 2-33 (128)
170 COG3809 Uncharacterized protei 22.7 79 0.0017 24.9 2.4 16 266-282 30-45 (88)
171 PF01485 IBR: IBR domain; Int 22.6 11 0.00023 27.1 -2.3 20 216-235 41-60 (64)
172 KOG4430 Topoisomerase I-bindin 21.3 31 0.00068 36.4 -0.0 63 186-264 252-314 (553)
No 1
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-51 Score=394.52 Aligned_cols=302 Identities=30% Similarity=0.582 Sum_probs=226.0
Q ss_pred CCCCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCcccCCC-CCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCC
Q 018801 25 HDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSESAASSS-SSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKT 103 (350)
Q Consensus 25 H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~~~~~~~~~~~~~-~~~~~s~~~s~~~~~~~~~~~~~~s~~~~p~~~p~~~ 103 (350)
||+..+...||+||++|.|++|+.|||+|+.+.........+ ++..++.. +......+.++ .+.+
T Consensus 1 ~d~~~~~~tic~~~~~g~c~~g~~cr~~h~~~~~~~~~~~~~~~s~~~~~~-------~~~~~~~~~~~-------~~~~ 66 (344)
T KOG1039|consen 1 HDLSLSQETICKYYQKGNCKFGDLCRLSHSLPDEEFATLLTPTTSSAAAST-------GLSQSLIWANA-------VADA 66 (344)
T ss_pred CccccccchhhhhcccccccccceeeeeccCchhhcccccccccccccccc-------ccchhhcccch-------hhcc
Confidence 677665558999999999999999999999995221111111 11101000 00000000000 0000
Q ss_pred CCCCCCCCCCCCcccccCCCCCCCCCCCccCchhhcCCCCCCCCCcccCCCCCCcCCccccCCCChHHHHHHHHHHH-H-
Q 018801 104 AWNPESVCNDSLENDEVDEPRNLKPADRSICSFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCE-K- 181 (350)
Q Consensus 104 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~C~~~~~G~C~~G~~C~~~Hg~~c~~c~~~~lhP~~~~~~~~h~~~c~-~- 181 (350)
.+. .+........+.............++|++.+.|.|.+|..|.++|+..|++|+.+.+||.+..+++.|++.|. .
T Consensus 67 s~~-~s~~~~~~~~~~~~s~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~c~l~~~~pi~~~~~~~~~~~~~~~~ 145 (344)
T KOG1039|consen 67 SAT-MSVSSRPVLTAIRASSSISEPSSTQENPYSNHGQCRFGNGDVTLNGNNPESCGLGTQHPICKRQYKNSMKRGSSCA 145 (344)
T ss_pred ccc-cchhcccchhhhhhhhccccccccccCccccccccccCCcccccccccccccccccccchhHHHHhhhhccccccc
Confidence 000 0000000000011111122344568899999999999999999999999999999999999999999999883 3
Q ss_pred ---HHHHHHHhhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccc
Q 018801 182 ---KQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (350)
Q Consensus 182 ---~~~~~~~~~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (350)
..++.++++.+++.+||||||.|++|+ +++++||||+||+|.||++||++|+..+++ ..+++++||+||+.+
T Consensus 146 ~~~~~e~~~a~~~s~~k~CGICme~i~ek~-~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~----~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 146 LSSAMERSFALQKSSEKECGICMETINEKA-ASERRFGILPNCNHSFCLNCIRKWRQATQF----ESKTSKSCPFCRVPS 220 (344)
T ss_pred chHhhhhccCcCccccccceehhhhccccc-hhhhhcccCCCcchhhhhcHhHhhhhhhcc----ccccccCCCcccCcc
Confidence 345678899999999999999999999 899999999999999999999999988875 568899999999999
Q ss_pred ceeecCcccccCchhHHHHHHHHHhhcCCCCCCcccCCCCCCCCCCCceeeccCCCCCchhhhh----hcccCCCCCee-
Q 018801 259 YFVIPSVIWYYTPEEKQEIIDSYKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDGRLEEVVL----RHLGSDDGSTV- 333 (350)
Q Consensus 259 ~~v~ps~~w~~~~~ek~~li~~yk~~~~~~~c~~f~~~~g~Cpfg~~C~y~H~~~~g~~~~~~~----r~~~~~~g~~~- 333 (350)
.+|+|+.+||+++++|+++|++|+++|+.++|+||++|.|.||||+.|||+|.+|+|...++.. |.. ...+.+.
T Consensus 221 ~~v~pS~~Wv~t~~~k~~li~e~~~~~s~~~c~yf~~~~g~cPf~s~~~y~h~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (344)
T KOG1039|consen 221 SFVNPSSFWVETKEEKQKLIEEYEAEMSAKDCKYFSQGLGSCPFGSKCFYKHLLPSGASTDPGRQYSPRRP-SNLNTYTN 299 (344)
T ss_pred ccccccceeeeecccccccHHHHHHHhhccchhhhcCCCCCCCCCCccccccccccccccccCCCCccccc-ccCcchhh
Confidence 9999999999999999999999999999999999999999999999999999999999988852 222 2333333
Q ss_pred ecccchHHHHhhhc
Q 018801 334 IAKDIRLSEFLTNM 347 (350)
Q Consensus 334 ~~~~~~l~~~~~~~ 347 (350)
+...+.++++|++.
T Consensus 300 ~~~~~~~~~~~~~~ 313 (344)
T KOG1039|consen 300 ILETTLTLRSLERN 313 (344)
T ss_pred cccceeehhhhhhh
Confidence 66777777777764
No 2
>PHA03096 p28-like protein; Provisional
Probab=99.97 E-value=7e-32 Score=256.92 Aligned_cols=139 Identities=30% Similarity=0.536 Sum_probs=126.8
Q ss_pred CCCCCCCCcccCCCCCCcCCccccCCCChHHHHHHHHHHHHHHHHHHHhhcccCccccccccccccCCcccccceeecCC
Q 018801 141 NCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSE 220 (350)
Q Consensus 141 ~C~~G~~C~~~Hg~~c~~c~~~~lhP~~~~~~~~h~~~c~~~~~~~~~~~~s~~~~C~ICle~v~~k~~~~~~~fgil~~ 220 (350)
.|.+|++|+|+||+.|++||+++|||.|++||.+|.++|+..++..... .+|+||||.|++|+ +++++||+|++
T Consensus 130 ~c~~g~~c~~lHg~lC~~C~k~~Lhp~d~eqr~~h~k~c~~~~~~~~~~-----k~c~ic~e~~~~k~-~~~~~fgil~~ 203 (284)
T PHA03096 130 NCYKGKYCEYLHGDICDICEKYLLHPTDIKQRYNEQKTCLSYQLRLLLS-----KICGICLENIKAKY-IIKKYYGILSE 203 (284)
T ss_pred hcccccCcHHHHHHHHHhhcchhcCCcCHHHHHHHHHHHHHHHHHHHHH-----hhcccchhhhhhhc-ccccccccccc
Confidence 5889999999999999999999999999999999999999988654332 88999999999998 78999999999
Q ss_pred CCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccccee----------ecCcccccCchhHHHHHHHHHhhcCCCCC
Q 018801 221 CDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV----------IPSVIWYYTPEEKQEIIDSYKSKLKSIDC 290 (350)
Q Consensus 221 C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v----------~ps~~w~~~~~ek~~li~~yk~~~~~~~c 290 (350)
|+|.||+.||+.|+..+.. .++.+.||.||..+.|| |||.+|+.++++|+.|+.+|++.+++++|
T Consensus 204 c~h~fc~~ci~~wr~~~~~-----~e~~~~c~~~~~~~~~v~~~~~~~~~~ips~~w~~~~~~K~~l~~~yk~~~~~K~c 278 (284)
T PHA03096 204 IKHEFNIFCIKIWMTESLY-----KETEPENRRLNTVIVFIEKINEDLKNNIPSRYWIDDKYDKNLLSFRYKKMHIRKVC 278 (284)
T ss_pred CCcHHHHHHHHHHHHhhhh-----cccCccccchhhHHHHHhhcchhhhccCCchhhhcChHHHHHHHHHHHHhhccccc
Confidence 9999999999999998752 45667777777777788 99999999999999999999999999998
No 3
>PHA02926 zinc finger-like protein; Provisional
Probab=99.84 E-value=1.3e-21 Score=177.49 Aligned_cols=81 Identities=37% Similarity=0.723 Sum_probs=71.7
Q ss_pred HHHHHHhhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceee
Q 018801 183 QKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (350)
Q Consensus 183 ~~~~~~~~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ 262 (350)
.++..+.++|+|.+||||||.+++|+.+++|+||+|++|+|+||+.||++|++.++. .++.++||+||+.+.+|+
T Consensus 159 ~~ye~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~-----~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 159 DKYEDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRE-----TGASDNCPICRTRFRNIT 233 (242)
T ss_pred HHHHHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccc-----cCcCCcCCCCcceeeeec
Confidence 455678899999999999999999987899999999999999999999999987642 345689999999999999
Q ss_pred cCcccc
Q 018801 263 PSVIWY 268 (350)
Q Consensus 263 ps~~w~ 268 (350)
||.++.
T Consensus 234 pSrf~~ 239 (242)
T PHA02926 234 MSKFYK 239 (242)
T ss_pred ccccee
Confidence 998763
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.49 E-value=2.4e-14 Score=133.54 Aligned_cols=69 Identities=38% Similarity=0.888 Sum_probs=58.9
Q ss_pred HhhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCccc
Q 018801 188 ALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIW 267 (350)
Q Consensus 188 ~~~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~w 267 (350)
+.+.+++.+|+||||.+.+++ ...+++|+|++|+|+||..||.+|.+.+ .+||+||..+.+|+++.+|
T Consensus 168 ~~~~~~~~eC~ICle~~~~~~-~~~~~~~vl~~C~H~FC~~CI~~Wl~~~-----------~tCPlCR~~~~~v~~~r~~ 235 (238)
T PHA02929 168 LYNRSKDKECAICMEKVYDKE-IKNMYFGILSNCNHVFCIECIDIWKKEK-----------NTCPVCRTPFISVIKSRFF 235 (238)
T ss_pred hhcCCCCCCCccCCcccccCc-cccccceecCCCCCcccHHHHHHHHhcC-----------CCCCCCCCEeeEEeeeeee
Confidence 345678899999999977654 4456789999999999999999999754 3899999999999999987
Q ss_pred c
Q 018801 268 Y 268 (350)
Q Consensus 268 ~ 268 (350)
.
T Consensus 236 ~ 236 (238)
T PHA02929 236 T 236 (238)
T ss_pred e
Confidence 5
No 5
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=99.10 E-value=3.3e-11 Score=117.13 Aligned_cols=54 Identities=35% Similarity=0.882 Sum_probs=49.8
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCCCCCCCCccC-CCCCCCCCCCccCCCCC
Q 018801 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQ-KGFCSYGSRCRYEHVKP 56 (350)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~-~G~C~~G~~C~y~H~~~ 56 (350)
++++|+||++|.|++||.|.|+|++...+++.|.||. .|.|.+|..|.|.|..+
T Consensus 76 ~~~vcK~~l~glC~kgD~C~Flhe~~~~k~rec~ff~~~g~c~~~~~c~y~h~dp 130 (325)
T KOG1040|consen 76 GKVVCKHWLRGLCKKGDQCEFLHEYDLTKMRECKFFSLFGECTNGKDCPYLHGDP 130 (325)
T ss_pred CceeehhhhhhhhhccCcCcchhhhhhcccccccccccccccccccCCcccCCCh
Confidence 5789999999999999999999999767788888886 89999999999999997
No 6
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.04 E-value=9.1e-11 Score=81.53 Aligned_cols=43 Identities=40% Similarity=1.006 Sum_probs=34.7
Q ss_pred cccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCc
Q 018801 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICR 255 (350)
Q Consensus 196 ~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR 255 (350)
+|+||+|.+.. +..+.+|+ |+|+||.+||.+|.+.+ .+||+||
T Consensus 2 ~C~IC~~~~~~-----~~~~~~l~-C~H~fh~~Ci~~~~~~~-----------~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED-----GEKVVKLP-CGHVFHRSCIKEWLKRN-----------NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT-----TSCEEEET-TSEEEEHHHHHHHHHHS-----------SB-TTTH
T ss_pred CCcCCChhhcC-----CCeEEEcc-CCCeeCHHHHHHHHHhC-----------CcCCccC
Confidence 69999999754 23456776 99999999999999875 3999998
No 7
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.87 E-value=1.3e-09 Score=75.38 Aligned_cols=42 Identities=38% Similarity=0.903 Sum_probs=29.9
Q ss_pred ccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCC
Q 018801 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (350)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (350)
|+||++. +.+| ..| .|+|+||.+||.+|.+..+.. ...||+|
T Consensus 1 CpiC~~~-~~~P-------v~l-~CGH~FC~~Cl~~~~~~~~~~-------~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDL-FKDP-------VSL-PCGHSFCRSCLERLWKEPSGS-------GFSCPEC 42 (42)
T ss_dssp ETTTTSB--SSE-------EE--SSSSEEEHHHHHHHHCCSSSS-------T---SSS
T ss_pred CCccchh-hCCc-------ccc-CCcCHHHHHHHHHHHHccCCc-------CCCCcCC
Confidence 8999996 6677 566 699999999999998765421 1589998
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.81 E-value=3.2e-09 Score=95.92 Aligned_cols=69 Identities=28% Similarity=0.755 Sum_probs=47.4
Q ss_pred HHhhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCC-----CccccccccCCCCccccce-
Q 018801 187 EALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSG-----MDVNTALRACPICRKLSYF- 260 (350)
Q Consensus 187 ~~~~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~-----~~~~~~~~~CP~CR~~~~~- 260 (350)
.+++..++.+|+||+|. +.+| ++..|+|.||..||.+|........ .+..+....||+||..+..
T Consensus 11 ~~~~~~~~~~CpICld~-~~dP--------VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 11 TLVDSGGDFDCNICLDQ-VRDP--------VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred eeccCCCccCCccCCCc-CCCc--------EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 35566678999999997 4444 4557999999999999986432100 0012234689999998864
Q ss_pred -eecC
Q 018801 261 -VIPS 264 (350)
Q Consensus 261 -v~ps 264 (350)
++|-
T Consensus 82 ~LvPi 86 (193)
T PLN03208 82 TLVPI 86 (193)
T ss_pred cEEEe
Confidence 4553
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.81 E-value=2.7e-09 Score=76.18 Aligned_cols=49 Identities=33% Similarity=0.777 Sum_probs=36.5
Q ss_pred cCccccccccccccCCcccccceeecCCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCCcccccee
Q 018801 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v 261 (350)
++.+|.||++...+ ..++ .|+|. ||..|+.+|.+.+ ..||+||+++..|
T Consensus 1 ~~~~C~iC~~~~~~--------~~~~-pCgH~~~C~~C~~~~~~~~-----------~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 1 EDEECPICFENPRD--------VVLL-PCGHLCFCEECAERLLKRK-----------KKCPICRQPIESV 50 (50)
T ss_dssp -HSB-TTTSSSBSS--------EEEE-TTCEEEEEHHHHHHHHHTT-----------SBBTTTTBB-SEE
T ss_pred CcCCCccCCccCCc--------eEEe-CCCChHHHHHHhHHhcccC-----------CCCCcCChhhcCC
Confidence 36789999997322 2455 59999 9999999999843 5999999987654
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.69 E-value=9.9e-09 Score=69.51 Aligned_cols=39 Identities=36% Similarity=1.122 Sum_probs=30.6
Q ss_pred ccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCC
Q 018801 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (350)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (350)
|+||++.+.+ | .++..|+|+||.+||.+|.+.+ .+||+|
T Consensus 1 C~iC~~~~~~-~-------~~~~~CGH~fC~~C~~~~~~~~-----------~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-P-------VVVTPCGHSFCKECIEKYLEKN-----------PKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-E-------EEECTTSEEEEHHHHHHHHHCT-----------SB-TTT
T ss_pred CCCCCCcccC-c-------CEECCCCCchhHHHHHHHHHCc-----------CCCcCC
Confidence 8999998543 4 4566899999999999999863 489998
No 11
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.3e-08 Score=93.73 Aligned_cols=57 Identities=28% Similarity=0.828 Sum_probs=45.8
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc--eeecC
Q 018801 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPS 264 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~--~v~ps 264 (350)
...+.+|.||||.. ++ .|++-|+|.||..||.+|...+.. .+.||+|+..+. .|||-
T Consensus 44 ~~~~FdCNICLd~a-kd--------PVvTlCGHLFCWpClyqWl~~~~~--------~~~cPVCK~~Vs~~~vvPl 102 (230)
T KOG0823|consen 44 DGGFFDCNICLDLA-KD--------PVVTLCGHLFCWPCLYQWLQTRPN--------SKECPVCKAEVSIDTVVPL 102 (230)
T ss_pred CCCceeeeeecccc-CC--------CEEeecccceehHHHHHHHhhcCC--------CeeCCccccccccceEEee
Confidence 44678999999984 33 377789999999999999998753 468999997765 58875
No 12
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.65 E-value=1.9e-08 Score=77.69 Aligned_cols=51 Identities=25% Similarity=0.747 Sum_probs=35.6
Q ss_pred cCccccccccccccCC-----cccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCc
Q 018801 193 QEIECSVCLDRVLSKP-----TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICR 255 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~-----~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR 255 (350)
.+..|+||++.+.+.. +..+..+ .+..|+|.|+..||.+|.+.+ .+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i-~~~~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPI-VWGPCGHIFHFHCISQWLKQN-----------NTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-E-EEETTSEEEEHHHHHHHHTTS-----------SB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccce-EecccCCCEEHHHHHHHHhcC-----------CcCCCCC
Confidence 3456999999974321 0122333 445699999999999999765 3999998
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.63 E-value=2.9e-08 Score=67.40 Aligned_cols=44 Identities=43% Similarity=1.111 Sum_probs=34.9
Q ss_pred cccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccc
Q 018801 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (350)
Q Consensus 196 ~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~ 257 (350)
+|+||++.+ .++ .+++.|+|.||..|+..|..... ..||+||..
T Consensus 1 ~C~iC~~~~-~~~-------~~~~~C~H~~c~~C~~~~~~~~~----------~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-REP-------VVLLPCGHVFCRSCIDKWLKSGK----------NTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-hCc-------eEecCCCChhcHHHHHHHHHhCc----------CCCCCCCCc
Confidence 599999985 332 45556999999999999997622 489999975
No 14
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=98.63 E-value=1.4e-08 Score=93.02 Aligned_cols=57 Identities=30% Similarity=0.719 Sum_probs=43.6
Q ss_pred Cccccccc-cccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCcc
Q 018801 4 RVLCKFFA-HGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSESA 62 (350)
Q Consensus 4 ~~~C~~f~-~G~C~~G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~~~~~~~~~ 62 (350)
.+.||||. +|.|-+|..|+|.|.... ..+|.-|+.|.|.....|..+|...+.+.+.
T Consensus 206 avycryynangicgkgaacrfvheptr--kticpkflngrcnkaedcnlsheldprripa 263 (377)
T KOG1492|consen 206 AVYCRYYNANGICGKGAACRFVHEPTR--KTICPKFLNGRCNKAEDCNLSHELDPRRIPA 263 (377)
T ss_pred eeEEEEecCCCcccCCceeeeeccccc--cccChHHhcCccCchhcCCcccccCccccch
Confidence 46788875 688888888888886543 5688888888888888888888877665443
No 15
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.8e-08 Score=95.29 Aligned_cols=48 Identities=40% Similarity=0.931 Sum_probs=38.9
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
..+-.|.||||. .+.| ... .|||+||..||..|-..+. .||+||..+.
T Consensus 237 ~a~~kC~LCLe~-~~~p-------SaT-pCGHiFCWsCI~~w~~ek~-----------eCPlCR~~~~ 284 (293)
T KOG0317|consen 237 EATRKCSLCLEN-RSNP-------SAT-PCGHIFCWSCILEWCSEKA-----------ECPLCREKFQ 284 (293)
T ss_pred CCCCceEEEecC-CCCC-------CcC-cCcchHHHHHHHHHHcccc-----------CCCcccccCC
Confidence 345789999998 4455 233 5999999999999999875 6999999864
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.61 E-value=2.8e-08 Score=67.67 Aligned_cols=41 Identities=39% Similarity=1.141 Sum_probs=32.4
Q ss_pred ccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCC
Q 018801 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (350)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (350)
|+||++. +.++ .++..|+|.||..||++|.+... ...||+|
T Consensus 1 C~iC~~~-~~~~-------~~~~~C~H~fC~~C~~~~~~~~~---------~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEP-FEDP-------VILLPCGHSFCRDCLRKWLENSG---------SVKCPLC 41 (41)
T ss_dssp ETTTSSB-CSSE-------EEETTTSEEEEHHHHHHHHHHTS---------SSBTTTT
T ss_pred CCcCCcc-ccCC-------CEEecCCCcchHHHHHHHHHhcC---------CccCCcC
Confidence 8999997 4444 34667999999999999998632 2579998
No 17
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=98.56 E-value=2.7e-08 Score=89.47 Aligned_cols=103 Identities=27% Similarity=0.660 Sum_probs=65.3
Q ss_pred CccC-chhhcCCCCCCCCCcccCCCCCCcCCccccCCCChHHHHHHHHHHHHHHHHHHHhhcccC-----cccccccccc
Q 018801 131 RSIC-SFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQE-----IECSVCLDRV 204 (350)
Q Consensus 131 ~~~C-~~~~~G~C~~G~~C~~~Hg~~c~~c~~~~lhP~~~~~~~~h~~~c~~~~~~~~~~~~s~~-----~~C~ICle~v 204 (350)
..+| +|-++|+|.||+.|.|+|.-.==--| |-| |.+ .. .++.++...+.+ ..|+||-+.
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~D~KtG-WkL---n~E--------Wn--A~~Ee~~v~~~~~e~IPF~C~iCKkd- 205 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRSDFKTG-WKL---NQE--------WN--AEYEEAPVISGPGEKIPFLCGICKKD- 205 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhhhhhcc-ccc---chh--------hc--chhhhcccccCCCCCCceeehhchhh-
Confidence 3679 67799999999999999964300000 000 000 00 112222222222 379999998
Q ss_pred ccCCcccccceeecCCCCCcCcHHH-HHHHhhhCCCCCCccccccccCCCCccccceeecCcccccCch
Q 018801 205 LSKPTAAERKFGLLSECDHPFCISC-IRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPE 272 (350)
Q Consensus 205 ~~k~~~~~~~fgil~~C~H~FC~~C-I~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~w~~~~~ 272 (350)
|+.| |..+|+|.||-.| |+++++. ..|-+|-+..+ ..+||...-
T Consensus 206 y~sp--------vvt~CGH~FC~~Cai~~y~kg------------~~C~~Cgk~t~----G~f~V~~d~ 250 (259)
T COG5152 206 YESP--------VVTECGHSFCSLCAIRKYQKG------------DECGVCGKATY----GRFWVVSDL 250 (259)
T ss_pred ccch--------hhhhcchhHHHHHHHHHhccC------------Ccceecchhhc----cceeHHhhH
Confidence 6655 6668999999999 6677654 28999988765 466886543
No 18
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=98.51 E-value=1.5e-08 Score=95.83 Aligned_cols=56 Identities=29% Similarity=0.511 Sum_probs=42.6
Q ss_pred cCCCCCCcccCC--------CCCCCCCC-CceeeccCCCCCchhhhhhcccCCCCCeeecccchHHHHhhhc
Q 018801 285 LKSIDCKHFNFG--------NGNCPFGT-SCFYKHAYTDGRLEEVVLRHLGSDDGSTVIAKDIRLSEFLTNM 347 (350)
Q Consensus 285 ~~~~~c~~f~~~--------~g~Cpfg~-~C~y~H~~~~g~~~~~~~r~~~~~~g~~~~~~~~~l~~~~~~~ 347 (350)
+..|.|+||-+. ++.||+|+ .|+|+|++|+|.+......... -...|.|.|||+..
T Consensus 154 ~tdiVCKfFLeAvE~~kYGWfW~CPnGg~~C~YrHaLP~GyVLk~dkkk~e-------k~~eISlEe~IE~E 218 (343)
T KOG1763|consen 154 TTDIVCKFFLEAVENGKYGWFWECPNGGDKCIYRHALPEGYVLKRDKKKLE-------KQDEISLEELIEKE 218 (343)
T ss_pred chhHHHHHHHHHHhcCCccceeECCCCCCeeeeeecCCcchhhhhhhhhhc-------ccccccHHHHHHHH
Confidence 345789999752 58999998 8999999999998774433332 34578999999864
No 19
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.49 E-value=1.1e-07 Score=75.12 Aligned_cols=60 Identities=23% Similarity=0.521 Sum_probs=41.3
Q ss_pred cCccccccccccccCC----cccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018801 193 QEIECSVCLDRVLSKP----TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~----~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
+|..||||...+..-- .|++.=--++-.|+|.|.+.||.+|.++... ...||+||.+..|
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~--------~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSS--------KGQCPMCRQPWKF 83 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccC--------CCCCCCcCCeeee
Confidence 4889999998744211 0111211234469999999999999987532 2499999998764
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=8.6e-08 Score=85.04 Aligned_cols=49 Identities=35% Similarity=0.815 Sum_probs=39.2
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
.-..|+|||+.+-+|- -+-.+|||+||-.||+.-++.. ..||+||+.+.
T Consensus 130 ~~~~CPiCl~~~sek~-------~vsTkCGHvFC~~Cik~alk~~-----------~~CP~C~kkIt 178 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKV-------PVSTKCGHVFCSQCIKDALKNT-----------NKCPTCRKKIT 178 (187)
T ss_pred cccCCCceecchhhcc-------ccccccchhHHHHHHHHHHHhC-----------CCCCCcccccc
Confidence 3478999999976653 3557899999999999999765 49999997543
No 21
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.6e-07 Score=94.97 Aligned_cols=79 Identities=24% Similarity=0.534 Sum_probs=52.2
Q ss_pred HHhhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce--eecC
Q 018801 187 EALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPS 264 (350)
Q Consensus 187 ~~~~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--v~ps 264 (350)
+.+--+.+..|+|||+.. .+..+.+|||+||..||-+...... .+.-+.||+||..++. |-|-
T Consensus 179 ~qv~~~t~~~CPICL~~~---------~~p~~t~CGHiFC~~CiLqy~~~s~------~~~~~~CPiC~s~I~~kdl~pv 243 (513)
T KOG2164|consen 179 FQVYGSTDMQCPICLEPP---------SVPVRTNCGHIFCGPCILQYWNYSA------IKGPCSCPICRSTITLKDLLPV 243 (513)
T ss_pred hhhhcCcCCcCCcccCCC---------CcccccccCceeeHHHHHHHHhhhc------ccCCccCCchhhhccccceeee
Confidence 334344599999999971 3578888999999999887443331 2345799999999986 5554
Q ss_pred cccccCchhHHHHHHHHHh
Q 018801 265 VIWYYTPEEKQEIIDSYKS 283 (350)
Q Consensus 265 ~~w~~~~~ek~~li~~yk~ 283 (350)
+|..+ .|++-++.+-.
T Consensus 244 -~~e~~--qkke~l~~~~~ 259 (513)
T KOG2164|consen 244 -FIEDD--QKKEELKLHQD 259 (513)
T ss_pred -eeccc--cccHHHHHHhc
Confidence 44433 22222555543
No 22
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=98.41 E-value=3.3e-07 Score=87.62 Aligned_cols=55 Identities=40% Similarity=0.915 Sum_probs=50.3
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCCC--CCCCCcc-CCCCCCCCCCCccCCCCCC
Q 018801 3 KRVLCKFFAHGACLKGEHCEFSHDWKDPP--NNICTYY-QKGFCSYGSRCRYEHVKPS 57 (350)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~~~~~~--~~~C~~f-~~G~C~~G~~C~y~H~~~~ 57 (350)
..++|++|+.|.|+.|..|.|+|..+... +..|++| +.|.|..|..|.|.|.++.
T Consensus 103 s~V~c~~~~~g~c~s~~~c~~lh~~d~~~s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~ 160 (285)
T COG5084 103 SSVVCKFFLRGLCKSGFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPSCGYSHIDPD 160 (285)
T ss_pred CCcccchhccccCcCCCccccccCCCcccccCCCcccccccceeccCCCCCccccCcc
Confidence 57899999999999999999999988766 7889999 7999999999999999853
No 23
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.39 E-value=3.9e-07 Score=89.11 Aligned_cols=95 Identities=24% Similarity=0.589 Sum_probs=70.2
Q ss_pred ccccccc-cccCCCCCCCCCCCCC-CC----------------CCCCCCCccC-CCCCCC-CCCCccCCCCCCCCCcccC
Q 018801 5 VLCKFFA-HGACLKGEHCEFSHDW-KD----------------PPNNICTYYQ-KGFCSY-GSRCRYEHVKPSRSESAAS 64 (350)
Q Consensus 5 ~~C~~f~-~G~C~~G~~C~f~H~~-~~----------------~~~~~C~~f~-~G~C~~-G~~C~y~H~~~~~~~~~~~ 64 (350)
..|.++. .|.|..|..|+|.|.. .. .++++|++|. .|.|+| |++|+|.|.....+.+...
T Consensus 87 ~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~ 166 (332)
T KOG1677|consen 87 GDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSE 166 (332)
T ss_pred cccccccccCCCCCCCCCCccCcccccccCCccccccccCcccccCCcceeeecCccccccCchhhhcCCcccccccccc
Confidence 4688776 5999999999999985 11 2356899998 799999 9999999998754422100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCccCchh-hcCCCC
Q 018801 65 SSSSVSHPSRATSSGITKVPGVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSICSFA-AAGNCP 143 (350)
Q Consensus 65 ~~~~~~~s~~~s~~~~~~~~~~~~~~s~~~~p~~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~C~~~-~~G~C~ 143 (350)
.........++.+|++| ..|.|+
T Consensus 167 --------------------------------------------------------~~~~~~~~~kt~lC~~f~~tG~C~ 190 (332)
T KOG1677|consen 167 --------------------------------------------------------NQVGNPPKYKTKLCPKFQKTGLCK 190 (332)
T ss_pred --------------------------------------------------------hhhcCCCCCCCcCCCccccCCCCC
Confidence 00011235677899655 669999
Q ss_pred CCCCCcccCCCC
Q 018801 144 RGEKCPHIHGDT 155 (350)
Q Consensus 144 ~G~~C~~~Hg~~ 155 (350)
||.+|+|+|+..
T Consensus 191 yG~rC~F~H~~~ 202 (332)
T KOG1677|consen 191 YGSRCRFIHGEP 202 (332)
T ss_pred CCCcCeecCCCc
Confidence 999999999976
No 24
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=2.4e-07 Score=88.24 Aligned_cols=56 Identities=29% Similarity=0.889 Sum_probs=45.6
Q ss_pred HHhhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccc
Q 018801 187 EALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (350)
Q Consensus 187 ~~~~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (350)
.+++.....+|.|||+.+. | ..++.+|| |+|.|...||.+|...-. ..||+||.+.
T Consensus 316 ~~~ea~~GveCaICms~fi-K----~d~~~vlP-C~H~FH~~Cv~kW~~~y~----------~~CPvCrt~i 371 (374)
T COG5540 316 RAVEADKGVECAICMSNFI-K----NDRLRVLP-CDHRFHVGCVDKWLLGYS----------NKCPVCRTAI 371 (374)
T ss_pred hHHhcCCCceEEEEhhhhc-c----cceEEEec-cCceechhHHHHHHhhhc----------ccCCccCCCC
Confidence 3566677899999999975 4 34588997 999999999999998432 4899999874
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.36 E-value=4.3e-07 Score=90.87 Aligned_cols=68 Identities=31% Similarity=0.638 Sum_probs=47.5
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCcccccC
Q 018801 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~w~~~ 270 (350)
...+..|+||++. +..| . +..|+|.||..||+.|.... ..||+||..+... -+..
T Consensus 23 Le~~l~C~IC~d~-~~~P-------v-itpCgH~FCs~CI~~~l~~~-----------~~CP~Cr~~~~~~-----~Lr~ 77 (397)
T TIGR00599 23 LDTSLRCHICKDF-FDVP-------V-LTSCSHTFCSLCIRRCLSNQ-----------PKCPLCRAEDQES-----KLRS 77 (397)
T ss_pred cccccCCCcCchh-hhCc-------c-CCCCCCchhHHHHHHHHhCC-----------CCCCCCCCccccc-----cCcc
Confidence 3356899999996 5555 3 44799999999999998653 3799999987531 1122
Q ss_pred chhHHHHHHHHHh
Q 018801 271 PEEKQEIIDSYKS 283 (350)
Q Consensus 271 ~~ek~~li~~yk~ 283 (350)
.-.-+.||+.|+.
T Consensus 78 N~~L~~iVe~~~~ 90 (397)
T TIGR00599 78 NWLVSEIVESFKN 90 (397)
T ss_pred chHHHHHHHHHHH
Confidence 2234567777753
No 26
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.35 E-value=3.2e-07 Score=63.79 Aligned_cols=44 Identities=39% Similarity=1.025 Sum_probs=33.2
Q ss_pred cccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcc
Q 018801 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRK 256 (350)
Q Consensus 196 ~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~ 256 (350)
.|+||++.+ ++ ++++.++ +|+|+||.+||.++. .. ...||+||+
T Consensus 1 ~C~~C~~~~-~~----~~~~~l~-~CgH~~C~~C~~~~~-~~----------~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKY-SE----ERRPRLT-SCGHIFCEKCLKKLK-GK----------SVKCPICRK 44 (44)
T ss_pred CCcCcCccc-cC----CCCeEEc-ccCCHHHHHHHHhhc-CC----------CCCCcCCCC
Confidence 499999985 21 3344555 699999999999999 22 259999985
No 27
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.8e-07 Score=90.28 Aligned_cols=54 Identities=30% Similarity=0.752 Sum_probs=43.1
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecC
Q 018801 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (350)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps 264 (350)
.+|.||||. |++ +.+..+|| |+|.|+..||..|..... ..||+|+..+.....+
T Consensus 230 ~~CaIClEd-Y~~----GdklRiLP-C~H~FH~~CIDpWL~~~r----------~~CPvCK~di~~~~~~ 283 (348)
T KOG4628|consen 230 DTCAICLED-YEK----GDKLRILP-CSHKFHVNCIDPWLTQTR----------TFCPVCKRDIRTDSGS 283 (348)
T ss_pred ceEEEeecc-ccc----CCeeeEec-CCCchhhccchhhHhhcC----------ccCCCCCCcCCCCCCC
Confidence 489999999 654 35678996 999999999999998652 4799999976544333
No 28
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=4.3e-07 Score=88.55 Aligned_cols=58 Identities=26% Similarity=0.763 Sum_probs=43.9
Q ss_pred cccCccccccccccccCCc-----ccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018801 191 RSQEIECSVCLDRVLSKPT-----AAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~-----~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
.+.|..|.||||.++..+. ..+.+---|| |+|+|.+.|++.|...+| +||+||.+.-|
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQ-----------TCPICr~p~if 346 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQ-----------TCPICRRPVIF 346 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhcc-----------CCCcccCcccc
Confidence 5678999999999765431 0111223465 999999999999998876 99999999554
No 29
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.23 E-value=1.3e-06 Score=64.59 Aligned_cols=46 Identities=20% Similarity=0.400 Sum_probs=37.4
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 194 ~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
+..|+||++. ++.| .++ .|+|+||.+||.+|...+ ..||+|+..+.
T Consensus 1 ~~~Cpi~~~~-~~~P-------v~~-~~G~v~~~~~i~~~~~~~-----------~~cP~~~~~~~ 46 (63)
T smart00504 1 EFLCPISLEV-MKDP-------VIL-PSGQTYERRAIEKWLLSH-----------GTDPVTGQPLT 46 (63)
T ss_pred CcCCcCCCCc-CCCC-------EEC-CCCCEEeHHHHHHHHHHC-----------CCCCCCcCCCC
Confidence 4679999997 5555 555 599999999999999763 38999999874
No 30
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=98.22 E-value=6.6e-07 Score=82.21 Aligned_cols=85 Identities=33% Similarity=0.763 Sum_probs=73.8
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 018801 2 SKRVLCKFFAHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKPSRSESAASSSSSVSHPSRATSSGIT 81 (350)
Q Consensus 2 tk~~~C~~f~~G~C~~G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~~~~~~~~~~~~~~~~~~s~~~s~~~~~ 81 (350)
|+..+|.-|++|+|.+.+.|..+|.++.++.+.|+||+-|.|. .++|+|.|..-...
T Consensus 231 trkticpkflngrcnkaedcnlsheldprripacryfllgkcn-npncryvhihysen---------------------- 287 (377)
T KOG1492|consen 231 TRKTICPKFLNGRCNKAEDCNLSHELDPRRIPACRYFLLGKCN-NPNCRYVHIHYSEN---------------------- 287 (377)
T ss_pred cccccChHHhcCccCchhcCCcccccCccccchhhhhhhccCC-CCCceEEEEeecCC----------------------
Confidence 4567899999999999999999999999999999999999998 59999999875110
Q ss_pred CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCccC-chhhcCCCCCCCCCcccCCCCCCc
Q 018801 82 KVPGVMPELSALSRPFLPPNKTAWNPESVCNDSLENDEVDEPRNLKPADRSIC-SFAAAGNCPRGEKCPHIHGDTCPT 158 (350)
Q Consensus 82 ~~~~~~~~~s~~~~p~~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~C-~~~~~G~C~~G~~C~~~Hg~~c~~ 158 (350)
.++| .|+.-|+|..|..|.-.|-..|..
T Consensus 288 -------------------------------------------------apicfefakygfcelgtscknqhilqctd 316 (377)
T KOG1492|consen 288 -------------------------------------------------APICFEFAKYGFCELGTSCKNQHILQCTD 316 (377)
T ss_pred -------------------------------------------------Cceeeeehhcceeccccccccceeeeecc
Confidence 1456 688999999999999999988764
No 31
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=98.18 E-value=1.2e-06 Score=85.62 Aligned_cols=58 Identities=41% Similarity=0.966 Sum_probs=49.1
Q ss_pred CCCccccccc-cccCCC-CCCCCCCCCCCC---------------CCCCCCCccCC-CCCCCCCCCccCCCCCCCC
Q 018801 2 SKRVLCKFFA-HGACLK-GEHCEFSHDWKD---------------PPNNICTYYQK-GFCSYGSRCRYEHVKPSRS 59 (350)
Q Consensus 2 tk~~~C~~f~-~G~C~~-G~~C~f~H~~~~---------------~~~~~C~~f~~-G~C~~G~~C~y~H~~~~~~ 59 (350)
-|+.+|++|. .|.|++ |++|+|.|.... .++.+|.+|++ |.|+||.+|.|.|......
T Consensus 130 ~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~ 205 (332)
T KOG1677|consen 130 YKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPSSENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR 205 (332)
T ss_pred ccCCcceeeecCccccccCchhhhcCCcccccccccchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence 3789999887 599999 999999997543 23678999995 9999999999999987544
No 32
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.14 E-value=1.7e-06 Score=56.48 Aligned_cols=39 Identities=49% Similarity=1.200 Sum_probs=29.7
Q ss_pred ccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCC
Q 018801 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (350)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (350)
|+||++. ... ..++ .|+|.||..||..|.+.. ...||+|
T Consensus 1 C~iC~~~-~~~-------~~~~-~C~H~~c~~C~~~~~~~~----------~~~CP~C 39 (39)
T smart00184 1 CPICLEE-LKD-------PVVL-PCGHTFCRSCIRKWLKSG----------NNTCPIC 39 (39)
T ss_pred CCcCccC-CCC-------cEEe-cCCChHHHHHHHHHHHhC----------cCCCCCC
Confidence 7899997 222 2455 599999999999999722 2479987
No 33
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.7e-06 Score=81.16 Aligned_cols=49 Identities=33% Similarity=0.889 Sum_probs=38.6
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHH-HhhhCCCCCCccccccccCCCCccccc
Q 018801 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN-WRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~-W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
..|..|.||||. .++| .-+ .|+|+||+.||.. |-..+- .-||+||..++
T Consensus 213 ~~d~kC~lC~e~-~~~p-------s~t-~CgHlFC~~Cl~~~~t~~k~----------~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEE-PEVP-------SCT-PCGHLFCLSCLLISWTKKKY----------EFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecc-cCCc-------ccc-cccchhhHHHHHHHHHhhcc----------ccCchhhhhcc
Confidence 457889999997 4555 334 5999999999999 987663 36999999753
No 34
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=7.6e-07 Score=64.22 Aligned_cols=51 Identities=31% Similarity=0.725 Sum_probs=38.4
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCc-CcHHH-HHHHhhhCCCCCCccccccccCCCCccccceee
Q 018801 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISC-IRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~C-I~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ 262 (350)
+-+.+|.||+|...+ .+|--|+|. .|++| |+.|+..+ ..||+||.++.-||
T Consensus 5 ~~~dECTICye~pvd---------sVlYtCGHMCmCy~Cg~rl~~~~~-----------g~CPiCRapi~dvI 57 (62)
T KOG4172|consen 5 QWSDECTICYEHPVD---------SVLYTCGHMCMCYACGLRLKKALH-----------GCCPICRAPIKDVI 57 (62)
T ss_pred ccccceeeeccCcch---------HHHHHcchHHhHHHHHHHHHHccC-----------CcCcchhhHHHHHH
Confidence 345889999998554 355579996 69999 77888644 38999999875443
No 35
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.97 E-value=4.1e-06 Score=58.17 Aligned_cols=35 Identities=29% Similarity=0.769 Sum_probs=20.5
Q ss_pred ccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhC
Q 018801 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSS 237 (350)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~ 237 (350)
|+||.| +.+. +..-.+|+ |+|+||.+||.+|.+..
T Consensus 1 CpIc~e-~~~~----~n~P~~L~-CGH~~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTE----ENPPMVLP-CGHVFCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TT----SS-EEE-S-SS-EEEHHHHHHHHHH-
T ss_pred CCcccc-ccCC----CCCCEEEe-CccHHHHHHHHHHHhcC
Confidence 899999 4332 22226676 99999999999999865
No 36
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.97 E-value=3.2e-06 Score=81.69 Aligned_cols=45 Identities=33% Similarity=0.980 Sum_probs=37.4
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
+.|+||.|. +.-| +|..|+|+||-=|||+....+. .||.|++++.
T Consensus 24 LRC~IC~ey-f~ip--------~itpCsHtfCSlCIR~~L~~~p-----------~CP~C~~~~~ 68 (442)
T KOG0287|consen 24 LRCGICFEY-FNIP--------MITPCSHTFCSLCIRKFLSYKP-----------QCPTCCVTVT 68 (442)
T ss_pred HHHhHHHHH-hcCc--------eeccccchHHHHHHHHHhccCC-----------CCCceecccc
Confidence 579999997 4444 4445999999999999998764 8999999875
No 37
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.96 E-value=9.2e-06 Score=78.59 Aligned_cols=54 Identities=22% Similarity=0.489 Sum_probs=39.6
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018801 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
.|..|+||+...+-.| +-+|-|. .|+|.||..||........ ..||+|+.++..
T Consensus 2 d~~~CP~Ck~~~y~np---~~kl~i~-~CGH~~C~sCv~~l~~~~~----------~~CP~C~~~lrk 55 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNP---SLKLMVN-VCGHTLCESCVDLLFVRGS----------GSCPECDTPLRK 55 (309)
T ss_pred CCCCCCcCCCCCccCc---ccccccC-CCCCcccHHHHHHHhcCCC----------CCCCCCCCccch
Confidence 3568999999877665 2344444 6999999999998432221 389999998764
No 38
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.95 E-value=1.8e-06 Score=53.91 Aligned_cols=24 Identities=46% Similarity=1.144 Sum_probs=16.7
Q ss_pred CCcccccccc-ccCCCCCCCCCCCC
Q 018801 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 (350)
Q Consensus 3 k~~~C~~f~~-G~C~~G~~C~f~H~ 26 (350)
|+.+|++|+. |.|++|++|+|+|+
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 5778887776 88888888888886
No 39
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=4.6e-06 Score=87.17 Aligned_cols=52 Identities=31% Similarity=0.671 Sum_probs=39.9
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcc
Q 018801 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRK 256 (350)
Q Consensus 190 ~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~ 256 (350)
....+..|.||+|.+..-+. ..--.|+ |+|+||..|+++|...++ +||+||.
T Consensus 287 ~~~~~~~C~IC~e~l~~~~~---~~~~rL~-C~Hifh~~CL~~W~er~q-----------tCP~CR~ 338 (543)
T KOG0802|consen 287 LALSDELCIICLEELHSGHN---ITPKRLP-CGHIFHDSCLRSWFERQQ-----------TCPTCRT 338 (543)
T ss_pred hhhcCCeeeeechhhccccc---cccceee-cccchHHHHHHHHHHHhC-----------cCCcchh
Confidence 34457899999998654311 1114564 999999999999999864 9999999
No 40
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=97.89 E-value=1.2e-06 Score=83.20 Aligned_cols=56 Identities=39% Similarity=0.995 Sum_probs=45.7
Q ss_pred CCccccccccccCCCCCCCCCCCCCCC------------CCC------------------------CCCCccCC----C-
Q 018801 3 KRVLCKFFAHGACLKGEHCEFSHDWKD------------PPN------------------------NICTYYQK----G- 41 (350)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~~~~------------~~~------------------------~~C~~f~~----G- 41 (350)
|.++|-||.+|.|.+|+.|.|+|++.. .+. .||+||+- |
T Consensus 91 KSvvCafFk~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE~~k 170 (343)
T KOG1763|consen 91 KSVVCAFFKQGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVENGK 170 (343)
T ss_pred hHHHHHHHhccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHhcCC
Confidence 678999999999999999999999652 111 28999973 3
Q ss_pred -----CCCCCC-CCccCCCCCCC
Q 018801 42 -----FCSYGS-RCRYEHVKPSR 58 (350)
Q Consensus 42 -----~C~~G~-~C~y~H~~~~~ 58 (350)
.|++|. .|.|.|..|+.
T Consensus 171 YGWfW~CPnGg~~C~YrHaLP~G 193 (343)
T KOG1763|consen 171 YGWFWECPNGGDKCIYRHALPEG 193 (343)
T ss_pred ccceeECCCCCCeeeeeecCCcc
Confidence 499975 89999999864
No 41
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=97.86 E-value=2.4e-06 Score=78.83 Aligned_cols=53 Identities=30% Similarity=0.426 Sum_probs=38.5
Q ss_pred CCCCcccC-------C-CCCCCCCC-CceeeccCCCCCchhhhhhcccCCCCCeeecccchHHHHhhhc
Q 018801 288 IDCKHFNF-------G-NGNCPFGT-SCFYKHAYTDGRLEEVVLRHLGSDDGSTVIAKDIRLSEFLTNM 347 (350)
Q Consensus 288 ~~c~~f~~-------~-~g~Cpfg~-~C~y~H~~~~g~~~~~~~r~~~~~~g~~~~~~~~~l~~~~~~~ 347 (350)
+.|+||-+ | .+.||||+ .|.|+|.+|+|.+......+. ...-.|+|.+||+..
T Consensus 142 ~VCkffieA~e~GkYgw~W~CPng~~~C~y~H~Lp~GyVLsrdk~Kd-------~tq~eislEefIE~e 203 (299)
T COG5252 142 RVCKFFIEAMESGKYGWGWTCPNGNMRCSYIHKLPDGYVLSRDKIKD-------STQVEISLEEFIELE 203 (299)
T ss_pred HHHHHHHHHHhcCCccceeeCCCCCceeeeeeccCccceeccccccc-------cccccccHHHHHHHH
Confidence 45666653 2 47999996 799999999999876664442 123468999999864
No 42
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.85 E-value=9.4e-06 Score=50.05 Aligned_cols=24 Identities=50% Similarity=1.131 Sum_probs=18.2
Q ss_pred CCccccccccccCCCCCCCCCCCC
Q 018801 3 KRVLCKFFAHGACLKGEHCEFSHD 26 (350)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~ 26 (350)
|+.+|++|+.|.|.+|++|+|+|+
T Consensus 3 k~~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CCCcCcCccCCCCCCCCCcCCCCc
Confidence 556787777788888888888775
No 43
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.84 E-value=2.9e-05 Score=59.80 Aligned_cols=66 Identities=20% Similarity=0.393 Sum_probs=46.7
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce--eecCcccccC
Q 018801 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYYT 270 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--v~ps~~w~~~ 270 (350)
++..|+|+.+. +.+| .+++ ++|+|+..+|.+|..... ..||+++..... ++|+
T Consensus 3 ~~f~CpIt~~l-M~dP-------Vi~~-~G~tyer~~I~~~l~~~~----------~~~P~t~~~l~~~~l~pn------ 57 (73)
T PF04564_consen 3 DEFLCPITGEL-MRDP-------VILP-SGHTYERSAIERWLEQNG----------GTDPFTRQPLSESDLIPN------ 57 (73)
T ss_dssp GGGB-TTTSSB--SSE-------EEET-TSEEEEHHHHHHHHCTTS----------SB-TTT-SB-SGGGSEE-------
T ss_pred cccCCcCcCcH-hhCc-------eeCC-cCCEEcHHHHHHHHHcCC----------CCCCCCCCcCCcccceEC------
Confidence 46789999996 7777 6775 779999999999998733 499999987653 4444
Q ss_pred chhHHHHHHHHHhh
Q 018801 271 PEEKQEIIDSYKSK 284 (350)
Q Consensus 271 ~~ek~~li~~yk~~ 284 (350)
..-+..|+.|.+.
T Consensus 58 -~~Lk~~I~~~~~~ 70 (73)
T PF04564_consen 58 -RALKSAIEEWCAE 70 (73)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 4467888888765
No 44
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=97.82 E-value=1.3e-05 Score=78.28 Aligned_cols=56 Identities=32% Similarity=0.823 Sum_probs=47.6
Q ss_pred CCCCcccccc-ccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCccCCCCC
Q 018801 1 MSKRVLCKFF-AHGACLKGEHCEFSHDWKDPPNNICTYYQKGFCSYGSRCRYEHVKP 56 (350)
Q Consensus 1 mtk~~~C~~f-~~G~C~~G~~C~f~H~~~~~~~~~C~~f~~G~C~~G~~C~y~H~~~ 56 (350)
|+|...|.|| +.|-|.+|.+|.|.|.-.......|.+|..|+|..|+.|++.|...
T Consensus 102 ~~k~rec~ff~~~g~c~~~~~c~y~h~dpqt~~k~c~~~~~g~c~~g~~c~~~h~~~ 158 (325)
T KOG1040|consen 102 LTKMRECKFFSLFGECTNGKDCPYLHGDPQTAIKKCKWYKEGFCRGGPSCKKRHERK 158 (325)
T ss_pred hcccccccccccccccccccCCcccCCChhhhhhccchhhhccCCCcchhhhhhhcc
Confidence 3556678766 5799999999999997644457899999999999999999999976
No 45
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=1.8e-05 Score=73.36 Aligned_cols=70 Identities=23% Similarity=0.555 Sum_probs=49.7
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCccccc
Q 018801 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYY 269 (350)
Q Consensus 190 ~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~w~~ 269 (350)
...++.+|+||++. +..| .+| .|+|+||..||..|.. . ...||.||. ... +..
T Consensus 9 ~~~~~~~C~iC~~~-~~~p-------~~l-~C~H~~c~~C~~~~~~-~----------~~~Cp~cr~-~~~------~~~ 61 (386)
T KOG2177|consen 9 VLQEELTCPICLEY-FREP-------VLL-PCGHNFCRACLTRSWE-G----------PLSCPVCRP-PSR------NLR 61 (386)
T ss_pred hccccccChhhHHH-hhcC-------ccc-cccchHhHHHHHHhcC-C----------CcCCcccCC-chh------ccC
Confidence 34467899999998 5444 466 5999999999999887 1 259999994 211 333
Q ss_pred CchhHHHHHHHHHhhcC
Q 018801 270 TPEEKQEIIDSYKSKLK 286 (350)
Q Consensus 270 ~~~ek~~li~~yk~~~~ 286 (350)
....-..+++.++....
T Consensus 62 ~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 62 PNVLLANLVERLRQLRL 78 (386)
T ss_pred ccHHHHHHHHHHHhcCC
Confidence 55556677888875543
No 46
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=97.78 E-value=8.1e-06 Score=78.75 Aligned_cols=53 Identities=32% Similarity=0.661 Sum_probs=45.0
Q ss_pred ccccccccccCCCCCC-CCCCCCCCC-----CCCCCCCccCCCCCCCCCCCccCCCCCCC
Q 018801 5 VLCKFFAHGACLKGEH-CEFSHDWKD-----PPNNICTYYQKGFCSYGSRCRYEHVKPSR 58 (350)
Q Consensus 5 ~~C~~f~~G~C~~G~~-C~f~H~~~~-----~~~~~C~~f~~G~C~~G~~C~y~H~~~~~ 58 (350)
.|||-|++|.|++|+. |+|.|.... -+...|..|++|.|. .++|+|.|.....
T Consensus 38 eVCReF~rn~C~R~d~~CkfaHP~~~~~V~~g~v~aC~Ds~kgrCs-R~nCkylHpp~hl 96 (331)
T KOG2494|consen 38 EVCREFLRNTCSRGDRECKFAHPPKNCQVSNGRVIACFDSQKGRCS-RENCKYLHPPQHL 96 (331)
T ss_pred HHHHHHHhccccCCCccccccCCCCCCCccCCeEEEEeccccCccC-cccceecCCChhh
Confidence 5899999999999998 999997543 223469999999999 5889999988764
No 47
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.73 E-value=9.3e-06 Score=60.76 Aligned_cols=44 Identities=41% Similarity=1.011 Sum_probs=22.4
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccc
Q 018801 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (350)
Q Consensus 194 ~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (350)
-+.|+||.+. +..| ..|.+|.|+||..||+.-.. ..||+|+++.
T Consensus 7 lLrCs~C~~~-l~~p-------v~l~~CeH~fCs~Ci~~~~~-------------~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDI-LKEP-------VCLGGCEHIFCSSCIRDCIG-------------SECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S---SS--------B---SSS--B-TTTGGGGTT-------------TB-SSS--B-
T ss_pred hcCCcHHHHH-hcCC-------ceeccCccHHHHHHhHHhcC-------------CCCCCcCChH
Confidence 4689999996 6666 67889999999999966222 2599999875
No 48
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.70 E-value=1.1e-05 Score=61.84 Aligned_cols=65 Identities=22% Similarity=0.464 Sum_probs=27.8
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 194 ~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
+.+|+||++.+.+... .....--.+.|+.+|++.|+.+|..+..........+...||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~-~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGE-IPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT------B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCC-cCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 5789999998762211 1122222358999999999999987543211112234457999999865
No 49
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.64 E-value=3.7e-05 Score=59.78 Aligned_cols=55 Identities=22% Similarity=0.561 Sum_probs=38.7
Q ss_pred ccccccccccccCC--------cccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccccee
Q 018801 195 IECSVCLDRVLSKP--------TAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (350)
Q Consensus 195 ~~C~ICle~v~~k~--------~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v 261 (350)
..|+||-..|++-= +..|-. .+---|+|.|..-||.+|.+++. .||++|+++.+-
T Consensus 21 d~CaICRnhim~~C~eCq~~~~~~~eC~-v~wG~CnHaFH~HCI~rWL~Tk~-----------~CPld~q~w~~~ 83 (88)
T COG5194 21 DVCAICRNHIMGTCPECQFGMTPGDECP-VVWGVCNHAFHDHCIYRWLDTKG-----------VCPLDRQTWVLA 83 (88)
T ss_pred chhhhhhccccCcCcccccCCCCCCcce-EEEEecchHHHHHHHHHHHhhCC-----------CCCCCCceeEEe
Confidence 56888887766421 112222 22224999999999999999864 899999987653
No 50
>smart00356 ZnF_C3H1 zinc finger.
Probab=97.58 E-value=5.5e-05 Score=46.55 Aligned_cols=25 Identities=32% Similarity=1.254 Sum_probs=22.4
Q ss_pred CCCCCCccCCCCCCCCCCCccCCCC
Q 018801 31 PNNICTYYQKGFCSYGSRCRYEHVK 55 (350)
Q Consensus 31 ~~~~C~~f~~G~C~~G~~C~y~H~~ 55 (350)
++.+|++|++|.|.+|++|+|+|..
T Consensus 3 k~~~C~~~~~g~C~~g~~C~~~H~~ 27 (27)
T smart00356 3 KTELCKFFKRGYCPYGDRCKFAHPL 27 (27)
T ss_pred CCCcCcCccCCCCCCCCCcCCCCcC
Confidence 4568999999999999999999973
No 51
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.53 E-value=1.1e-05 Score=50.41 Aligned_cols=25 Identities=28% Similarity=1.107 Sum_probs=19.0
Q ss_pred CCCCCCccCC-CCCCCCCCCccCCCC
Q 018801 31 PNNICTYYQK-GFCSYGSRCRYEHVK 55 (350)
Q Consensus 31 ~~~~C~~f~~-G~C~~G~~C~y~H~~ 55 (350)
++.+|++|++ |.|.+|++|+|+|..
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred ccccChhhccCCccCCCCCcCccCCC
Confidence 4679999985 999999999999973
No 52
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=4.6e-05 Score=72.73 Aligned_cols=97 Identities=21% Similarity=0.506 Sum_probs=59.6
Q ss_pred ccC-chhhcCCCCCCCCCcccCCCCCCcCCccccCCCChHHHHHHHHHHHHHHHHHHHhhcccC---ccccccccccccC
Q 018801 132 SIC-SFAAAGNCPRGEKCPHIHGDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQE---IECSVCLDRVLSK 207 (350)
Q Consensus 132 ~~C-~~~~~G~C~~G~~C~~~Hg~~c~~c~~~~lhP~~~~~~~~h~~~c~~~~~~~~~~~~s~~---~~C~ICle~v~~k 207 (350)
.+| .|-++|+|.||+.|.|+|.-.+=--| |-|+- ++ ... .+..-..-.-.+ ..|.||-+.+++
T Consensus 187 DicKdykeTgycg~gdSckFlh~r~DyK~G-Wqi~~---e~-d~~-------ke~~~~~~~D~~~~Pf~c~icr~~f~~- 253 (313)
T KOG1813|consen 187 DICKDYKETGYCGYGDSCKFLHDRSDYKAG-WQIEF---EW-DSA-------KEKKRVKIEDIELLPFKCFICRKYFYR- 253 (313)
T ss_pred hhhhhhHhhCcccccchhhhhhhhhhcccc-ceeeh---hh-hcc-------ccccceecCCcccCCcccccccccccc-
Confidence 679 57799999999999999986633222 11111 10 000 010001111122 349999998654
Q ss_pred CcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018801 208 PTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 208 ~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
| |.++|+|.||-.|-.+=.+.. ..|++|-+..+-
T Consensus 254 p--------Vvt~c~h~fc~~ca~~~~qk~-----------~~c~vC~~~t~g 287 (313)
T KOG1813|consen 254 P--------VVTKCGHYFCEVCALKPYQKG-----------EKCYVCSQQTHG 287 (313)
T ss_pred c--------hhhcCCceeehhhhccccccC-----------Ccceeccccccc
Confidence 3 667899999999955433322 389999987653
No 53
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.30 E-value=0.00012 Score=69.70 Aligned_cols=52 Identities=29% Similarity=0.694 Sum_probs=41.0
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccccee-ecCcc
Q 018801 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV-IPSVI 266 (350)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v-~ps~~ 266 (350)
+.|-||-+.|. - .++..|+|+||.=|||.....+. .||+||..+.++ .++..
T Consensus 26 lrC~IC~~~i~-i--------p~~TtCgHtFCslCIR~hL~~qp-----------~CP~Cr~~~~esrlr~~s 78 (391)
T COG5432 26 LRCRICDCRIS-I--------PCETTCGHTFCSLCIRRHLGTQP-----------FCPVCREDPCESRLRGSS 78 (391)
T ss_pred HHhhhhhheee-c--------ceecccccchhHHHHHHHhcCCC-----------CCccccccHHhhhcccch
Confidence 56999999743 2 46778999999999999998764 799999998763 34433
No 54
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00014 Score=56.07 Aligned_cols=59 Identities=22% Similarity=0.537 Sum_probs=39.5
Q ss_pred cCccccccccccccCCc-----ccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018801 193 QEIECSVCLDRVLSKPT-----AAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~-----~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
.+++||||--.+ +..= |++.=--++--|.|.|..-||.+|...+... ..||+||+++.|
T Consensus 19 ~~e~CGiCRm~F-dg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq--------~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 19 PDETCGICRMPF-DGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQ--------GQCPMCRQTWQF 82 (84)
T ss_pred CCCccceEeccc-CCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCcccc--------ccCCcchheeEe
Confidence 345899997653 2110 1111112444589999999999999877532 489999998765
No 55
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00018 Score=76.37 Aligned_cols=47 Identities=30% Similarity=0.752 Sum_probs=39.5
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 194 ~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
-+.|+.|-+...+ .+++.|+|+||..||++-...++ +.||.|-..|.
T Consensus 643 ~LkCs~Cn~R~Kd---------~vI~kC~H~FC~~Cvq~r~etRq----------RKCP~Cn~aFg 689 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---------AVITKCGHVFCEECVQTRYETRQ----------RKCPKCNAAFG 689 (698)
T ss_pred ceeCCCccCchhh---------HHHHhcchHHHHHHHHHHHHHhc----------CCCCCCCCCCC
Confidence 3789999975322 68889999999999999888876 69999999875
No 56
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.0005 Score=69.36 Aligned_cols=52 Identities=35% Similarity=0.733 Sum_probs=31.9
Q ss_pred ccccccccccCCCCCCCCCCCCCCCC-CCCCCCccCCCCCCCCCCCccCCCCCC
Q 018801 5 VLCKFFAHGACLKGEHCEFSHDWKDP-PNNICTYYQKGFCSYGSRCRYEHVKPS 57 (350)
Q Consensus 5 ~~C~~f~~G~C~~G~~C~f~H~~~~~-~~~~C~~f~~G~C~~G~~C~y~H~~~~ 57 (350)
..|.||+.-.|++++.|.|+|.-+.. ...+|++|+.+.|-. +.|+|.|+.-.
T Consensus 4 ~dcyff~ys~cKk~d~c~~rh~E~al~n~t~C~~w~~~~~C~-k~C~YRHSe~~ 56 (667)
T KOG4791|consen 4 EDCYFFFYSTCKKGDSCPFRHCEAALGNETVCTLWQEGRCCR-KVCRYRHSEID 56 (667)
T ss_pred ccchhhhhhhhhccCcCcchhhHHHhcCcchhhhhhhcCccc-ccccchhhHHh
Confidence 34777777777777777777764332 234566666554432 36666666543
No 57
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=96.98 E-value=9.7e-05 Score=68.42 Aligned_cols=56 Identities=34% Similarity=0.901 Sum_probs=45.5
Q ss_pred CCccccccccccCCCCCCCCCCCCCCC-------------------C---------CCCCCCccC----CC------CCC
Q 018801 3 KRVLCKFFAHGACLKGEHCEFSHDWKD-------------------P---------PNNICTYYQ----KG------FCS 44 (350)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~~~~-------------------~---------~~~~C~~f~----~G------~C~ 44 (350)
|+++|-.|+.+.|.+|+.|.|+|+... . ...||+||+ .| .|.
T Consensus 84 K~~vcalF~~~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W~CP 163 (299)
T COG5252 84 KTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGWTCP 163 (299)
T ss_pred hhHHHHHhccCccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccceeeCC
Confidence 688999999999999999999998432 0 134899996 34 499
Q ss_pred CC-CCCccCCCCCCC
Q 018801 45 YG-SRCRYEHVKPSR 58 (350)
Q Consensus 45 ~G-~~C~y~H~~~~~ 58 (350)
+| .+|.|.|..|..
T Consensus 164 ng~~~C~y~H~Lp~G 178 (299)
T COG5252 164 NGNMRCSYIHKLPDG 178 (299)
T ss_pred CCCceeeeeeccCcc
Confidence 97 789999999863
No 58
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.96 E-value=0.00026 Score=71.00 Aligned_cols=49 Identities=41% Similarity=0.954 Sum_probs=36.9
Q ss_pred ccCccccccccccccCCcccccceeecC-CCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 192 SQEIECSVCLDRVLSKPTAAERKFGLLS-ECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~-~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
.+-.+|+||||.+-+..+ ||++ -|+|+|.-.|+.+|... +||+||-...
T Consensus 173 tELPTCpVCLERMD~s~~------gi~t~~c~Hsfh~~cl~~w~~~-------------scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTT------GILTILCNHSFHCSCLMKWWDS-------------SCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCcccc------ceeeeecccccchHHHhhcccC-------------cChhhhhhcC
Confidence 345789999998544321 4432 49999999999999863 8999997554
No 59
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00037 Score=66.84 Aligned_cols=48 Identities=31% Similarity=0.704 Sum_probs=36.7
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHH--HhhhCCCCCCccccccccCCCCccccc
Q 018801 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN--WRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~--W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
+..+.+|.||+.. ..-| ..| .|+|.||+-||.. |.+. ++|++||.++.
T Consensus 4 ~~~~~eC~IC~nt-~n~P-------v~l-~C~HkFCyiCiKGsy~ndk------------~~CavCR~pid 53 (324)
T KOG0824|consen 4 RTKKKECLICYNT-GNCP-------VNL-YCFHKFCYICIKGSYKNDK------------KTCAVCRFPID 53 (324)
T ss_pred cccCCcceeeecc-CCcC-------ccc-cccchhhhhhhcchhhcCC------------CCCceecCCCC
Confidence 3467899999998 3333 456 5999999999986 5432 58999999875
No 60
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.00012 Score=71.52 Aligned_cols=48 Identities=35% Similarity=0.740 Sum_probs=37.2
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccc
Q 018801 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (350)
.++.|.|||+.|. +. .....|.|-||.+||-+=..... ..||.||+..
T Consensus 42 ~~v~c~icl~llk-~t-------mttkeClhrfc~~ci~~a~r~gn----------~ecptcRk~l 89 (381)
T KOG0311|consen 42 IQVICPICLSLLK-KT-------MTTKECLHRFCFDCIWKALRSGN----------NECPTCRKKL 89 (381)
T ss_pred hhhccHHHHHHHH-hh-------cccHHHHHHHHHHHHHHHHHhcC----------CCCchHHhhc
Confidence 4678999999754 33 45668999999999977555443 5999999875
No 61
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=96.83 E-value=0.0004 Score=67.24 Aligned_cols=25 Identities=28% Similarity=0.800 Sum_probs=22.8
Q ss_pred CCCCCccCCCCCCCCCC-CccCCCCC
Q 018801 32 NNICTYYQKGFCSYGSR-CRYEHVKP 56 (350)
Q Consensus 32 ~~~C~~f~~G~C~~G~~-C~y~H~~~ 56 (350)
..|||-|++|.|+.|++ |+|.|...
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP~~ 62 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHPPK 62 (331)
T ss_pred HHHHHHHHhccccCCCccccccCCCC
Confidence 35899999999999999 99999865
No 62
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=96.70 E-value=0.003 Score=60.81 Aligned_cols=53 Identities=32% Similarity=0.757 Sum_probs=48.8
Q ss_pred Ccccccc-ccccCCCCCCCCCCCCCCCCCCCCCCccC---CCCCCCCCCCccCCCCC
Q 018801 4 RVLCKFF-AHGACLKGEHCEFSHDWKDPPNNICTYYQ---KGFCSYGSRCRYEHVKP 56 (350)
Q Consensus 4 ~~~C~~f-~~G~C~~G~~C~f~H~~~~~~~~~C~~f~---~G~C~~G~~C~y~H~~~ 56 (350)
...|++| +.|.|..|..|.|.|...+.....|.+|. .++|.+|..|++.|...
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~~~~~~~~~~~~~~~~f~p~g~~c~~~H~~~ 190 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHIDPDSFAGNCDQYSGATYGFCPLGASCKFSHTLK 190 (285)
T ss_pred CCCcccccccceeccCCCCCccccCcccccccccccCcccccccCCCCccccccccc
Confidence 5679999 89999999999999988777788999999 79999999999999987
No 63
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=96.68 E-value=0.0025 Score=61.23 Aligned_cols=53 Identities=34% Similarity=0.875 Sum_probs=45.0
Q ss_pred cccccc-ccccCCC---CCCCCCC---CCCCC---------CCCCCCCccC-CCCCCCCCCCccCCCCCC
Q 018801 5 VLCKFF-AHGACLK---GEHCEFS---HDWKD---------PPNNICTYYQ-KGFCSYGSRCRYEHVKPS 57 (350)
Q Consensus 5 ~~C~~f-~~G~C~~---G~~C~f~---H~~~~---------~~~~~C~~f~-~G~C~~G~~C~y~H~~~~ 57 (350)
.+|.-| ..|.|.. |+.|.|+ |.++. .++..|.-|+ -|.|.||.+|.|.|....
T Consensus 231 ~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~ 300 (351)
T COG5063 231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKKKKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDS 300 (351)
T ss_pred HHhhccCcCCCCccccccccccccccccccccccccccccccccCCccchhhcccCccccccccccCChh
Confidence 688766 5799999 9999999 98765 3567898888 699999999999999764
No 64
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.66 E-value=0.00067 Score=71.98 Aligned_cols=69 Identities=22% Similarity=0.370 Sum_probs=50.6
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCcc-----ccc
Q 018801 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVI-----WYY 269 (350)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~-----w~~ 269 (350)
..|+||+-...+.. .+.-..|.|.||-.||..|-...+ +||+||+.|..|++... ||.
T Consensus 124 ~~CP~Ci~s~~DqL------~~~~k~c~H~FC~~Ci~sWsR~aq-----------TCPiDR~EF~~v~V~eS~~~~~~vR 186 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQL------EESEKHTAHYFCEECVGSWSRCAQ-----------TCPVDRGEFGEVKVLESTGIEANVR 186 (1134)
T ss_pred hhhhHHHHHHHHHh------hccccccccccHHHHhhhhhhhcc-----------cCchhhhhhheeeeeccccccceeE
Confidence 46999998755432 234446999999999999997654 99999999999888643 443
Q ss_pred --CchhHHHHHHH
Q 018801 270 --TPEEKQEIIDS 280 (350)
Q Consensus 270 --~~~ek~~li~~ 280 (350)
..+|++.++++
T Consensus 187 ~lP~EEs~~~~e~ 199 (1134)
T KOG0825|consen 187 CLPSEESENILEK 199 (1134)
T ss_pred ecchhhhhhhhhh
Confidence 24666665554
No 65
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0012 Score=67.01 Aligned_cols=55 Identities=25% Similarity=0.760 Sum_probs=37.9
Q ss_pred cCccccccccccccCCcccc---------cceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccc
Q 018801 193 QEIECSVCLDRVLSKPTAAE---------RKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~---------~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (350)
....|.|||..|-=..+.++ +-| +++.|.|+|...|+.+|++.-. ..||.||.+.
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nY-m~tPC~HifH~~CL~~WMd~yk----------l~CPvCR~pL 633 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNY-MLTPCHHIFHRQCLLQWMDTYK----------LICPVCRCPL 633 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccc-cccchHHHHHHHHHHHHHhhhc----------ccCCccCCCC
Confidence 34679999987632211111 123 4456999999999999998532 3899999874
No 66
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=96.43 E-value=0.0045 Score=63.61 Aligned_cols=56 Identities=23% Similarity=0.571 Sum_probs=45.8
Q ss_pred CccccccccccCCCCCCCCCCCCCCC-------CCCCCCCccCCCCCCCCCCCccCCCCCCCCCcc
Q 018801 4 RVLCKFFAHGACLKGEHCEFSHDWKD-------PPNNICTYYQKGFCSYGSRCRYEHVKPSRSESA 62 (350)
Q Consensus 4 ~~~C~~f~~G~C~~G~~C~f~H~~~~-------~~~~~C~~f~~G~C~~G~~C~y~H~~~~~~~~~ 62 (350)
.++|--|.+|.|.+||+|.|.|..-. .++..|+.- |.|.. .-|.|+|.....+...
T Consensus 236 ~tpCPefrkG~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg--~~C~R-rvCfFAH~~eqLR~l~ 298 (528)
T KOG1595|consen 236 STPCPEFRKGSCERGDSCEYAHGVFECWLHPARYRTRKCKDG--GYCPR-RVCFFAHSPEQLRPLP 298 (528)
T ss_pred CccCcccccCCCCCCCccccccceehhhcCHHHhccccccCC--CCCcc-ceEeeecChHHhcccC
Confidence 46899999999999999999998654 467788876 88997 8899999988765443
No 67
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0022 Score=64.58 Aligned_cols=75 Identities=24% Similarity=0.541 Sum_probs=50.4
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCcccccC-
Q 018801 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT- 270 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~w~~~- 270 (350)
..+.+|.||+..++ +| ..+ +|+|+||..||.+=.+. ...||.||..+.- .+...-...
T Consensus 82 ~sef~c~vc~~~l~-~p-------v~t-pcghs~c~~Cl~r~ld~-----------~~~cp~Cr~~l~e-~~~~~~~~~~ 140 (398)
T KOG4159|consen 82 RSEFECCVCSRALY-PP-------VVT-PCGHSFCLECLDRSLDQ-----------ETECPLCRDELVE-LPALEQALSL 140 (398)
T ss_pred cchhhhhhhHhhcC-CC-------ccc-cccccccHHHHHHHhcc-----------CCCCccccccccc-chHHHHHHHH
Confidence 56789999999855 45 444 79999999998883331 2489999998764 111111111
Q ss_pred chhHHHHHHHHHhhcCC
Q 018801 271 PEEKQEIIDSYKSKLKS 287 (350)
Q Consensus 271 ~~ek~~li~~yk~~~~~ 287 (350)
+..+.++|.+|.+....
T Consensus 141 ~r~~~~li~~F~~~~~~ 157 (398)
T KOG4159|consen 141 NRLLCKLITKFLEGSSS 157 (398)
T ss_pred HHHHHHHHHHhhhhhhc
Confidence 34455788888766655
No 68
>KOG4791 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.00094 Score=67.46 Aligned_cols=54 Identities=20% Similarity=0.622 Sum_probs=39.6
Q ss_pred CccccccccccCCCCCCCCCCCCCCC--CCCCCCCccCCCC-CCCCCCCccCCCCCCCC
Q 018801 4 RVLCKFFAHGACLKGEHCEFSHDWKD--PPNNICTYYQKGF-CSYGSRCRYEHVKPSRS 59 (350)
Q Consensus 4 ~~~C~~f~~G~C~~G~~C~f~H~~~~--~~~~~C~~f~~G~-C~~G~~C~y~H~~~~~~ 59 (350)
.++|+||+.|.|-+ +.|+|.|.--+ ++...|.|++++. |. .++|-|.|..|+..
T Consensus 32 ~t~C~~w~~~~~C~-k~C~YRHSe~~~kr~e~~CYwe~~p~gC~-k~~CgfRH~~pPLk 88 (667)
T KOG4791|consen 32 ETVCTLWQEGRCCR-KVCRYRHSEIDKKRSEIPCYWENQPTGCQ-KLNCGFRHNRPPLK 88 (667)
T ss_pred cchhhhhhhcCccc-ccccchhhHHhhhcCcccceeecCCCccC-CCccccccCCCchh
Confidence 46788888887665 48899887432 3456788888877 87 48888988877543
No 69
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.0043 Score=61.86 Aligned_cols=54 Identities=30% Similarity=0.712 Sum_probs=43.8
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018801 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 194 ~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
..+|+|||+.+ . .+.+.+..+| -|+|.|=-+||++|.. + +.+..||.|.....+
T Consensus 4 g~tcpiclds~-~--~~g~hr~vsl-~cghlFgs~cie~wl~-k--------~~~~~cp~c~~katk 57 (463)
T KOG1645|consen 4 GTTCPICLDSY-T--TAGNHRIVSL-QCGHLFGSQCIEKWLG-K--------KTKMQCPLCSGKATK 57 (463)
T ss_pred cccCceeeeee-e--ecCceEEeee-cccccccHHHHHHHHh-h--------hhhhhCcccCChhHH
Confidence 46899999984 3 3578888888 5999999999999995 3 235799999887764
No 70
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.17 E-value=0.0024 Score=69.22 Aligned_cols=61 Identities=26% Similarity=0.629 Sum_probs=43.8
Q ss_pred HhhcccCccccccccccc--cCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccccee
Q 018801 188 ALRRSQEIECSVCLDRVL--SKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (350)
Q Consensus 188 ~~~~s~~~~C~ICle~v~--~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v 261 (350)
..+-+.-.+|+||..++- +..-|+ + .-+-|.|-|+-.|+-+|..+... .+||+||..+.|+
T Consensus 1463 ~~~fsG~eECaICYsvL~~vdr~lPs-k---rC~TCknKFH~~CLyKWf~Ss~~---------s~CPlCRseitfv 1525 (1525)
T COG5219 1463 DEKFSGHEECAICYSVLDMVDRSLPS-K---RCATCKNKFHTRCLYKWFASSAR---------SNCPLCRSEITFV 1525 (1525)
T ss_pred hhhcCCcchhhHHHHHHHHHhccCCc-c---ccchhhhhhhHHHHHHHHHhcCC---------CCCCccccccccC
Confidence 456677799999998754 111122 1 12349999999999999987652 5899999887764
No 71
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.10 E-value=0.0024 Score=62.10 Aligned_cols=56 Identities=29% Similarity=0.656 Sum_probs=44.2
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCc
Q 018801 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSV 265 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~ 265 (350)
...-.+|.+|-..+.+- -+++.|-|+||.+||-+..... +.||+|.+......|..
T Consensus 12 ~n~~itC~LC~GYliDA--------TTI~eCLHTFCkSCivk~l~~~-----------~~CP~C~i~ih~t~pl~ 67 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDA--------TTITECLHTFCKSCIVKYLEES-----------KYCPTCDIVIHKTHPLL 67 (331)
T ss_pred cccceehhhccceeecc--------hhHHHHHHHHHHHHHHHHHHHh-----------ccCCccceeccCccccc
Confidence 34568999999987653 3566799999999999887653 59999999888766553
No 72
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.0032 Score=62.31 Aligned_cols=51 Identities=33% Similarity=0.971 Sum_probs=38.9
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccc
Q 018801 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (350)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (350)
..|.||.+- +| ..+-.|-+.-|+|+|...|+.+|...... .+.||+||...
T Consensus 5 A~C~Ic~d~---~p--~~~~l~~i~~cGhifh~~cl~qwfe~~Ps--------~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDG---RP--NDHELGPIGTCGHIFHTTCLTQWFEGDPS--------NRGCPICQIKL 55 (465)
T ss_pred ceeeEeccC---Cc--cccccccccchhhHHHHHHHHHHHccCCc--------cCCCCceeecc
Confidence 579999553 33 35667888779999999999999986542 27999999443
No 73
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=96.02 E-value=0.0039 Score=35.72 Aligned_cols=18 Identities=50% Similarity=1.172 Sum_probs=11.3
Q ss_pred cccccccccCCCCCCCCCCC
Q 018801 6 LCKFFAHGACLKGEHCEFSH 25 (350)
Q Consensus 6 ~C~~f~~G~C~~G~~C~f~H 25 (350)
.|+||.+ |++|++|.|+|
T Consensus 1 ~Ck~~~~--C~~~~~C~f~H 18 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSH 18 (19)
T ss_pred CCcCcCC--CCCCCcCccCC
Confidence 3666654 66666666666
No 74
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=95.83 E-value=0.0078 Score=61.90 Aligned_cols=52 Identities=25% Similarity=0.498 Sum_probs=40.3
Q ss_pred CCccccccccccCCCCCCCCCCCCCC-CC---------CCCCCCccCCCCCCCCCCCccCCCCCC
Q 018801 3 KRVLCKFFAHGACLKGEHCEFSHDWK-DP---------PNNICTYYQKGFCSYGSRCRYEHVKPS 57 (350)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~~~-~~---------~~~~C~~f~~G~C~~G~~C~y~H~~~~ 57 (350)
|...|. ++.|.-+..|+|.|..+ ++ ....|.-|.+|.|..||.|-|.|...+
T Consensus 200 Kir~C~---R~~shDwteCPf~HpgEkARRRDPRkyhYs~tpCPefrkG~C~rGD~CEyaHgvfE 261 (528)
T KOG1595|consen 200 KIRRCS---RPRSHDWTECPFAHPGEKARRRDPRKYHYSSTPCPEFRKGSCERGDSCEYAHGVFE 261 (528)
T ss_pred eecccC---CccCCCcccCCccCCCcccccCCcccccccCccCcccccCCCCCCCccccccceeh
Confidence 444453 34788889999999433 21 246899999999999999999999863
No 75
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.80 E-value=0.0093 Score=42.46 Aligned_cols=44 Identities=23% Similarity=0.598 Sum_probs=30.9
Q ss_pred cccccccccccCCcccccceeecCCCC-----CcCcHHHHHHHhhhCCCCCCccccccccCCCCc
Q 018801 196 ECSVCLDRVLSKPTAAERKFGLLSECD-----HPFCISCIRNWRSSSPTSGMDVNTALRACPICR 255 (350)
Q Consensus 196 ~C~ICle~v~~k~~~~~~~fgil~~C~-----H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR 255 (350)
.|-||++. .+ + +.. -++ .|. |.+..+|+.+|...+. ..+||+|.
T Consensus 1 ~CrIC~~~-~~-~---~~~-l~~-PC~C~G~~~~vH~~Cl~~W~~~~~---------~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GD-E---GDP-LVS-PCRCKGSLKYVHQECLERWINESG---------NKTCEICK 49 (49)
T ss_pred CccCCCCC-CC-C---CCe-eEe-ccccCCchhHHHHHHHHHHHHHcC---------CCcCCCCC
Confidence 48899982 11 1 122 244 475 9999999999998764 24899995
No 76
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.0059 Score=59.97 Aligned_cols=46 Identities=33% Similarity=0.781 Sum_probs=37.2
Q ss_pred CccccccccccccCCcccccceeecCCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 194 ~~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
..+|-|||....+ -.||| |.|. -|-+|-..-|-.. +.||+||.++.
T Consensus 290 gkeCVIClse~rd--------t~vLP-CRHLCLCs~Ca~~Lr~q~-----------n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRD--------TVVLP-CRHLCLCSGCAKSLRYQT-----------NNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcc--------eEEec-chhhehhHhHHHHHHHhh-----------cCCCccccchH
Confidence 6899999998443 27886 9996 6999999998443 48999999875
No 77
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.74 E-value=0.0051 Score=61.26 Aligned_cols=25 Identities=28% Similarity=0.876 Sum_probs=23.0
Q ss_pred CCCCCccCCCCCCCCCCCccCCCCC
Q 018801 32 NNICTYYQKGFCSYGSRCRYEHVKP 56 (350)
Q Consensus 32 ~~~C~~f~~G~C~~G~~C~y~H~~~ 56 (350)
+.+|+||+.|.|+||.+|||+|...
T Consensus 140 MkpC~ffLeg~CRF~enCRfSHG~~ 164 (486)
T KOG2185|consen 140 MKPCKFFLEGRCRFGENCRFSHGLD 164 (486)
T ss_pred hccchHhhccccccCcccccccCcc
Confidence 5689999999999999999999865
No 78
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.72 E-value=0.0063 Score=60.40 Aligned_cols=51 Identities=29% Similarity=0.718 Sum_probs=41.1
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcc
Q 018801 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRK 256 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~ 256 (350)
..++-|+.|-|.+-.|+. +.-.|| |.|+|.++|+.+....+. .++||-||+
T Consensus 363 e~~L~Cg~CGe~~Glk~e----~LqALp-CsHIfH~rCl~e~L~~n~---------~rsCP~Crk 413 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNE----RLQALP-CSHIFHLRCLQEILENNG---------TRSCPNCRK 413 (518)
T ss_pred HHhhhhhhhhhhhcCCcc----cccccc-hhHHHHHHHHHHHHHhCC---------CCCCccHHH
Confidence 346789999999988873 445675 999999999999985543 479999993
No 79
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.64 E-value=0.036 Score=53.37 Aligned_cols=110 Identities=20% Similarity=0.339 Sum_probs=71.7
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCcccccCchhH
Q 018801 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTPEEK 274 (350)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~w~~~~~ek 274 (350)
+.|+.|--.+ ..| .-.+.|+|.||-.||.+-.-..+ +.||.|-..--. +-+ +..+.+|
T Consensus 275 LkCplc~~Ll-rnp-------~kT~cC~~~fc~eci~~al~dsD----------f~CpnC~rkdvl-ld~---l~pD~dk 332 (427)
T COG5222 275 LKCPLCHCLL-RNP-------MKTPCCGHTFCDECIGTALLDSD----------FKCPNCSRKDVL-LDG---LTPDIDK 332 (427)
T ss_pred ccCcchhhhh-hCc-------ccCccccchHHHHHHhhhhhhcc----------ccCCCcccccch-hhc---cCccHHH
Confidence 7899999864 444 33478999999999998776655 489999764321 111 2234567
Q ss_pred HHHHHHHHhhcCCCCCCcccCCCCCCCCCCCceeeccCCCCCchhhhhhcccCCCCCeeecccchHHHHhhh
Q 018801 275 QEIIDSYKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDGRLEEVVLRHLGSDDGSTVIAKDIRLSEFLTN 346 (350)
Q Consensus 275 ~~li~~yk~~~~~~~c~~f~~~~g~Cpfg~~C~y~H~~~~g~~~~~~~r~~~~~~g~~~~~~~~~l~~~~~~ 346 (350)
++-|+.+.++-+.+ .|+ -.||...+...|+..+..|.+.+.+.-.|-.|...
T Consensus 333 ~~EvE~~lkkq~~~--------~gt------------s~d~n~p~s~k~k~~dp~~sa~~~~~ta~pa~~~~ 384 (427)
T COG5222 333 KLEVEKALKKQRKK--------VGT------------SDDNNTPMSEKRKREDPNSSAVFSKATAEPAFKSA 384 (427)
T ss_pred HHHHHHHHHHHHHh--------cCC------------CCCCCCchhhhhhccCCCcchhhccccccchhhhc
Confidence 77777766544332 111 24666667777888777788777776666555544
No 80
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=95.56 E-value=0.006 Score=61.48 Aligned_cols=50 Identities=26% Similarity=0.767 Sum_probs=40.1
Q ss_pred cccCccccccccccccCCcccccceeec-CCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018801 191 RSQEIECSVCLDRVLSKPTAAERKFGLL-SECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil-~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
..++..|+||+.++ ..| +. ..|+|.||..||.+|....+ .||.||.....
T Consensus 18 ~~~~l~C~~C~~vl-~~p--------~~~~~cgh~fC~~C~~~~~~~~~-----------~cp~~~~~~~~ 68 (391)
T KOG0297|consen 18 LDENLLCPICMSVL-RDP--------VQTTTCGHRFCAGCLLESLSNHQ-----------KCPVCRQELTQ 68 (391)
T ss_pred CcccccCccccccc-cCC--------CCCCCCCCcccccccchhhccCc-----------CCcccccccch
Confidence 34678999999974 444 44 47999999999999998743 89999887753
No 81
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.0081 Score=49.10 Aligned_cols=30 Identities=33% Similarity=0.831 Sum_probs=25.8
Q ss_pred CCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018801 220 ECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 220 ~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
.|+|.|.+-||.+|.++++ .||+|-+.-.|
T Consensus 80 ~CNHaFH~hCisrWlktr~-----------vCPLdn~eW~~ 109 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRN-----------VCPLDNKEWVF 109 (114)
T ss_pred ecchHHHHHHHHHHHhhcC-----------cCCCcCcceeE
Confidence 5999999999999999875 89999876433
No 82
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=95.42 E-value=0.0059 Score=62.23 Aligned_cols=53 Identities=32% Similarity=0.811 Sum_probs=41.8
Q ss_pred Cccccccccc---cCCCCCCCCCCCCCCC---C----CCCCCCccC-CCCCCCCCCCccCCCCC
Q 018801 4 RVLCKFFAHG---ACLKGEHCEFSHDWKD---P----PNNICTYYQ-KGFCSYGSRCRYEHVKP 56 (350)
Q Consensus 4 ~~~C~~f~~G---~C~~G~~C~f~H~~~~---~----~~~~C~~f~-~G~C~~G~~C~y~H~~~ 56 (350)
..+|.-..+| .|.+|++|+|.||.+. . -.+-|.+|. .|+|.+|-.|||.-...
T Consensus 76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Dig~~Cp~f~s~G~Cp~G~~CRFl~aHl 139 (614)
T KOG2333|consen 76 NRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDIGPSCPVFESLGFCPYGFKCRFLGAHL 139 (614)
T ss_pred hccChHhhcCCCccCcccccccccccHHHHHhccCcccCCccceeeccccCCccceeehhhccc
Confidence 4678766666 7999999999999764 1 135799998 79999999999974443
No 83
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.42 E-value=0.014 Score=62.89 Aligned_cols=62 Identities=27% Similarity=0.674 Sum_probs=43.8
Q ss_pred hhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 189 ~~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
.....-.+|-||+|.|... ...|.-- +|-|+|.|.||++|..+.+..+ ..+-.||.|...+.
T Consensus 186 ~l~~~~yeCmIC~e~I~~t----~~~WSC~-sCYhVFHl~CI~~WArs~ek~~----~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 186 QLSNRKYECMICTERIKRT----APVWSCK-SCYHVFHLNCIKKWARSSEKTG----QDGWRCPACQSVSK 247 (950)
T ss_pred HHhcCceEEEEeeeecccc----CCceecc-hhhhhhhHHHHHHHHHHhhhcc----CccccCCcccchhc
Confidence 3444568999999997543 2334444 5999999999999998754321 24568999995544
No 84
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.37 E-value=0.0064 Score=60.55 Aligned_cols=26 Identities=46% Similarity=0.893 Sum_probs=23.4
Q ss_pred CccccccccccCCCCCCCCCCCCCCC
Q 018801 4 RVLCKFFAHGACLKGEHCEFSHDWKD 29 (350)
Q Consensus 4 ~~~C~~f~~G~C~~G~~C~f~H~~~~ 29 (350)
-.+|.||+.|.|++|++|+|+|.+..
T Consensus 140 MkpC~ffLeg~CRF~enCRfSHG~~V 165 (486)
T KOG2185|consen 140 MKPCKFFLEGRCRFGENCRFSHGLDV 165 (486)
T ss_pred hccchHhhccccccCcccccccCccc
Confidence 36899999999999999999998764
No 85
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.0039 Score=59.07 Aligned_cols=65 Identities=26% Similarity=0.589 Sum_probs=43.8
Q ss_pred cCccccccccccccCCcc---cccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce-eecCcccc
Q 018801 193 QEIECSVCLDRVLSKPTA---AERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF-VIPSVIWY 268 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~---~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~-v~ps~~w~ 268 (350)
.|..|.||-..+...-+. -|+.| .| +|+|+|.-.|||.|---.. ..+||-|+..+.. -.+|+-|-
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty-~L-sCnHvFHEfCIrGWcivGK---------kqtCPYCKekVdl~rmfsnpWe 291 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTY-KL-SCNHVFHEFCIRGWCIVGK---------KQTCPYCKEKVDLKRMFSNPWE 291 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhhe-ee-ecccchHHHhhhhheeecC---------CCCCchHHHHhhHhhhccCccc
Confidence 567899998876542100 01222 23 4999999999999985432 2499999988774 55676664
No 86
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.15 E-value=0.014 Score=42.86 Aligned_cols=46 Identities=20% Similarity=0.518 Sum_probs=29.8
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCC
Q 018801 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPI 253 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~ 253 (350)
......|+|.+.. +++| ..-..|+|+|-.+-|.+|.+.+. ...||+
T Consensus 8 ~~~~~~CPiT~~~-~~~P-------V~s~~C~H~fek~aI~~~i~~~~---------~~~CPv 53 (57)
T PF11789_consen 8 GTISLKCPITLQP-FEDP-------VKSKKCGHTFEKEAILQYIQRNG---------SKRCPV 53 (57)
T ss_dssp SB--SB-TTTSSB--SSE-------EEESSS--EEEHHHHHHHCTTTS----------EE-SC
T ss_pred cEeccCCCCcCCh-hhCC-------cCcCCCCCeecHHHHHHHHHhcC---------CCCCCC
Confidence 3456899999997 6666 45558999999999999994332 368998
No 87
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=94.70 E-value=0.025 Score=32.39 Aligned_cols=19 Identities=26% Similarity=0.873 Sum_probs=16.1
Q ss_pred CCCccCCCCCCCCCCCccCCC
Q 018801 34 ICTYYQKGFCSYGSRCRYEHV 54 (350)
Q Consensus 34 ~C~~f~~G~C~~G~~C~y~H~ 54 (350)
.|+|+.. |.+|++|.|+|.
T Consensus 1 ~Ck~~~~--C~~~~~C~f~HP 19 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSHP 19 (19)
T ss_pred CCcCcCC--CCCCCcCccCCc
Confidence 4887765 999999999994
No 88
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=94.53 E-value=0.016 Score=57.77 Aligned_cols=49 Identities=29% Similarity=0.704 Sum_probs=37.4
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018801 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 194 ~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
-..|-||-|. +|. .-+..|+|..|-.|+..|..+... .+||.||-++.-
T Consensus 369 FeLCKICaen--dKd-------vkIEPCGHLlCt~CLa~WQ~sd~g---------q~CPFCRcEIKG 417 (563)
T KOG1785|consen 369 FELCKICAEN--DKD-------VKIEPCGHLLCTSCLAAWQDSDEG---------QTCPFCRCEIKG 417 (563)
T ss_pred HHHHHHhhcc--CCC-------cccccccchHHHHHHHhhcccCCC---------CCCCceeeEecc
Confidence 3569999996 332 334469999999999999965432 489999988763
No 89
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.034 Score=52.99 Aligned_cols=53 Identities=26% Similarity=0.599 Sum_probs=38.0
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 190 ~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
..+.+.+|++|-+.- .-| +.+. .|+|+||.-||.+=+.... ..+||.|-....
T Consensus 235 ~~t~~~~C~~Cg~~P-tiP------~~~~-~C~HiyCY~Ci~ts~~~~a---------sf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPP-TIP------HVIG-KCGHIYCYYCIATSRLWDA---------SFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCC-CCC------eeec-cccceeehhhhhhhhcchh---------hcccCccCCCCc
Confidence 455679999999962 222 3444 5999999999998554321 259999988754
No 90
>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]
Probab=94.07 E-value=0.15 Score=49.35 Aligned_cols=57 Identities=14% Similarity=0.222 Sum_probs=40.8
Q ss_pred CCcccccc-ccccCCCCCCCCCCCCCCC---------CCCCCCCccC-CCCCCCCCCCccCCCCCCCC
Q 018801 3 KRVLCKFF-AHGACLKGEHCEFSHDWKD---------PPNNICTYYQ-KGFCSYGSRCRYEHVKPSRS 59 (350)
Q Consensus 3 k~~~C~~f-~~G~C~~G~~C~f~H~~~~---------~~~~~C~~f~-~G~C~~G~~C~y~H~~~~~~ 59 (350)
|+.+|+-- -.+.|+.++.|+|.|.-.. .++..|..|+ .|.|.++.+|-|-|......
T Consensus 114 kt~~l~ss~~~~~~~~p~~n~fahs~~issl~~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~ 181 (351)
T COG5063 114 KTEMLRSSTEIPYCRYPDKNPFAHSKAISSLAQTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDI 181 (351)
T ss_pred cchhhhccccccccccCCCCcCCCccccccccccCccccccceeEEecCCcccccccccccccccccc
Confidence 34445432 2478999999999997432 2355687776 79999999999998776543
No 91
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=93.95 E-value=0.031 Score=63.13 Aligned_cols=66 Identities=21% Similarity=0.565 Sum_probs=43.8
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceee
Q 018801 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (350)
Q Consensus 190 ~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ 262 (350)
.+..|.+|-||+..-+.... .|-.+|+|+|.+.|.|.-...+-. |....-.-.+||+|..+++.++
T Consensus 3482 kQD~DDmCmICFTE~L~AAP------~IqL~C~HiFHlqC~R~vLE~RW~-GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAP------AIQLDCSHIFHLQCCRRVLENRWL-GPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred hcccCceEEEEehhhhCCCc------ceecCCccchhHHHHHHHHHhccc-CCeeEEeeeecccccchhhhHH
Confidence 44568889999987555331 676689999999998864433321 0001112358999999988643
No 92
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=93.65 E-value=0.094 Score=46.26 Aligned_cols=14 Identities=36% Similarity=0.562 Sum_probs=11.4
Q ss_pred ccccCCCCccccce
Q 018801 247 ALRACPICRKLSYF 260 (350)
Q Consensus 247 ~~~~CP~CR~~~~~ 260 (350)
....||+||..+.-
T Consensus 79 ~~L~CPLCRG~V~G 92 (162)
T PF07800_consen 79 PELACPLCRGEVKG 92 (162)
T ss_pred ccccCccccCceec
Confidence 46789999998864
No 93
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=93.48 E-value=0.029 Score=57.78 Aligned_cols=54 Identities=30% Similarity=0.625 Sum_probs=40.5
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
...+.+|++|-|. .++ .|.+.|-|.||.-||.++...-.. . ...+||.|-+...
T Consensus 533 nk~~~~C~lc~d~-aed--------~i~s~ChH~FCrlCi~eyv~~f~~----~--~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 533 NKGEVECGLCHDP-AED--------YIESSCHHKFCRLCIKEYVESFME----N--NNVTCPVCHIGLS 586 (791)
T ss_pred ccCceeecccCCh-hhh--------hHhhhhhHHHHHHHHHHHHHhhhc----c--cCCCCcccccccc
Confidence 3456899999997 333 477889999999999998865421 1 1269999987764
No 94
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.19 E-value=0.088 Score=52.81 Aligned_cols=58 Identities=26% Similarity=0.651 Sum_probs=41.6
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
.-..|.||++.-+ +...|-.|+ |+|+||.+|.+.+....-.++. . ....||.+.-.+.
T Consensus 183 slf~C~ICf~e~~-----G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~-v--~~l~Cp~~~C~~~ 240 (445)
T KOG1814|consen 183 SLFDCCICFEEQM-----GQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQ-V--SCLKCPDPKCGSV 240 (445)
T ss_pred hcccceeeehhhc-----Ccceeeecc-cchHHHHHHHHHHHHHhhhcce-e--eeecCCCCCCccc
Confidence 3467999999743 346777886 9999999999998876543321 1 2347998887653
No 95
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=92.82 E-value=0.052 Score=46.65 Aligned_cols=48 Identities=23% Similarity=0.576 Sum_probs=31.4
Q ss_pred HHHHHhhcc-cCccccccccccccCCcccccceeecCCC------CCcCcHHHHHHHhhhC
Q 018801 184 KHLEALRRS-QEIECSVCLDRVLSKPTAAERKFGLLSEC------DHPFCISCIRNWRSSS 237 (350)
Q Consensus 184 ~~~~~~~~s-~~~~C~ICle~v~~k~~~~~~~fgil~~C------~H~FC~~CI~~W~~~~ 237 (350)
++++-.+-. ...+|.||++.|.+ . .-...++ | -|.||.+|+.+|+...
T Consensus 15 ~~lf~~~w~~~~~EC~IC~~~I~~-~----~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 15 ERLFNDQWPRCTVECQICFDRIDN-N----DGVVYVT-DGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred HHHHHHHccccCeeehhhhhhhhc-C----CCEEEEe-cCCeehHHHHHHHHHHHHHHhhc
Confidence 344444433 37999999999876 1 1112232 4 4899999999996544
No 96
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.62 E-value=0.21 Score=47.52 Aligned_cols=70 Identities=21% Similarity=0.411 Sum_probs=49.7
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce--eecCccccc
Q 018801 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF--VIPSVIWYY 269 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~--v~ps~~w~~ 269 (350)
.....|+|....+-. ..+|..|-.|||+|+.++|.+-. .. ..||+|-.+|.- |||-. .
T Consensus 111 ~~~~~CPvt~~~~~~-----~~~fv~l~~cG~V~s~~alke~k--~~----------~~Cp~c~~~f~~~DiI~Ln---p 170 (260)
T PF04641_consen 111 EGRFICPVTGKEFNG-----KHKFVYLRPCGCVFSEKALKELK--KS----------KKCPVCGKPFTEEDIIPLN---P 170 (260)
T ss_pred CceeECCCCCcccCC-----ceeEEEEcCCCCEeeHHHHHhhc--cc----------ccccccCCccccCCEEEec---C
Confidence 345789999987532 36899999999999999999985 21 369999999873 45432 2
Q ss_pred CchhHHHHHHHH
Q 018801 270 TPEEKQEIIDSY 281 (350)
Q Consensus 270 ~~~ek~~li~~y 281 (350)
..+|.+.+.+..
T Consensus 171 ~~ee~~~l~~~~ 182 (260)
T PF04641_consen 171 PEEELEKLRERM 182 (260)
T ss_pred CccHHHHHHHHH
Confidence 233555555544
No 97
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=91.05 E-value=0.24 Score=35.21 Aligned_cols=47 Identities=23% Similarity=0.608 Sum_probs=22.0
Q ss_pred ccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccc
Q 018801 197 CSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (350)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (350)
|++|+|.+.. .+..|.-= .|++..|+.|-..-+.... ..||-||.+.
T Consensus 1 cp~C~e~~d~----~d~~~~PC-~Cgf~IC~~C~~~i~~~~~----------g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDE----TDKDFYPC-ECGFQICRFCYHDILENEG----------GRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--C----CCTT--SS-TTS----HHHHHHHTTSS-----------SB-TTT--B-
T ss_pred CCCccccccc----CCCccccC-cCCCcHHHHHHHHHHhccC----------CCCCCCCCCC
Confidence 7899998622 23444333 5999999999766664322 4899999875
No 98
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.01 E-value=0.12 Score=51.99 Aligned_cols=55 Identities=27% Similarity=0.565 Sum_probs=37.7
Q ss_pred Cccccccc-cccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 194 EIECSVCL-DRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 194 ~~~C~ICl-e~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
..+|+||+ +.+. .+..|- ...|+|-||.+|.++-...+... .+..+||.=+=++.
T Consensus 146 ~~~C~iC~~e~~~-----~~~~f~-~~~C~H~fC~~C~k~~iev~~~~-----~~~~~C~~~~C~~~ 201 (384)
T KOG1812|consen 146 KEECGICFVEDPE-----AEDMFS-VLKCGHRFCKDCVKQHIEVKLLS-----GTVIRCPHDGCESR 201 (384)
T ss_pred cccCccCcccccc-----HhhhHH-HhcccchhhhHHhHHHhhhhhcc-----CCCccCCCCCCCcc
Confidence 57899999 5422 245566 44799999999999998877533 34567875433333
No 99
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.75 E-value=0.079 Score=51.34 Aligned_cols=34 Identities=29% Similarity=0.783 Sum_probs=26.2
Q ss_pred ceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018801 214 KFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 214 ~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
.||-+-.|.|+||++|.+.-. .|.||.|-..+..
T Consensus 102 IYGRmIPCkHvFCl~CAr~~~-------------dK~Cp~C~d~Vqr 135 (389)
T KOG2932|consen 102 IYGRMIPCKHVFCLECARSDS-------------DKICPLCDDRVQR 135 (389)
T ss_pred eeecccccchhhhhhhhhcCc-------------cccCcCcccHHHH
Confidence 578888899999999976422 2699999776643
No 100
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.24 E-value=0.15 Score=43.86 Aligned_cols=64 Identities=22% Similarity=0.609 Sum_probs=38.5
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHH-HHHHhhhCCCCCCccccccccCCCCccccceeecCcccc
Q 018801 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISC-IRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWY 268 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~C-I~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~w~ 268 (350)
..|.+|+||+..-+. .+|+|. |.-| ||--..-.....+..++++-.|-+||.....+..+..|+
T Consensus 63 ~ddatC~IC~KTKFA------------DG~GH~-C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~il~ksg~wf 127 (169)
T KOG3799|consen 63 GDDATCGICHKTKFA------------DGCGHN-CSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEILTKSGAWF 127 (169)
T ss_pred CcCcchhhhhhcccc------------cccCcc-cchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHHHHhcchHH
Confidence 567999999998443 367775 3333 222111111122234566778888888877777777775
No 101
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.71 E-value=0.12 Score=51.25 Aligned_cols=25 Identities=36% Similarity=0.984 Sum_probs=23.5
Q ss_pred ccccccccccCCCCCCCCCCCCCCC
Q 018801 5 VLCKFFAHGACLKGEHCEFSHDWKD 29 (350)
Q Consensus 5 ~~C~~f~~G~C~~G~~C~f~H~~~~ 29 (350)
++|+||+.|.|+.|+.|+|+|++.+
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~~~~ 33 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHSLPD 33 (344)
T ss_pred hhhhhcccccccccceeeeeccCch
Confidence 7999999999999999999999873
No 102
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.44 E-value=0.13 Score=48.16 Aligned_cols=46 Identities=30% Similarity=0.834 Sum_probs=31.5
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018801 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
+.|.-|.-- | +...|-|+ +|.|+||..|...=. ...||+||+....
T Consensus 4 VhCn~C~~~----~--~~~~f~LT-aC~HvfC~~C~k~~~-------------~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 4 VHCNKCFRF----P--SQDPFFLT-ACRHVFCEPCLKASS-------------PDVCPLCKKSIRI 49 (233)
T ss_pred EEecccccc----C--CCCceeee-echhhhhhhhcccCC-------------ccccccccceeee
Confidence 457777764 2 24556555 799999999965322 1289999999654
No 103
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=89.19 E-value=0.22 Score=29.93 Aligned_cols=19 Identities=32% Similarity=1.086 Sum_probs=9.1
Q ss_pred CCCccCCC-CCCCCCCCccCC
Q 018801 34 ICTYYQKG-FCSYGSRCRYEH 53 (350)
Q Consensus 34 ~C~~f~~G-~C~~G~~C~y~H 53 (350)
+|.|-+.| .|. .+.|.|.|
T Consensus 2 lC~yEl~Gg~Cn-d~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCN-DPDCEFQH 21 (23)
T ss_pred CCccccCCCeeC-CCCCCccc
Confidence 44455544 444 24555555
No 104
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=88.90 E-value=0.15 Score=46.57 Aligned_cols=26 Identities=31% Similarity=1.077 Sum_probs=22.8
Q ss_pred CCCCCccC-CCCCCCCCCCccCCCCCC
Q 018801 32 NNICTYYQ-KGFCSYGSRCRYEHVKPS 57 (350)
Q Consensus 32 ~~~C~~f~-~G~C~~G~~C~y~H~~~~ 57 (350)
..||+-|. +|+|-||+.|.|+|.+.+
T Consensus 141 pdVCKdyk~TGYCGYGDsCKflH~R~D 167 (259)
T COG5152 141 PDVCKDYKETGYCGYGDSCKFLHDRSD 167 (259)
T ss_pred cccccchhhcccccCCchhhhhhhhhh
Confidence 34899886 899999999999999874
No 105
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.88 E-value=0.063 Score=51.64 Aligned_cols=43 Identities=33% Similarity=0.799 Sum_probs=30.2
Q ss_pred CccccccccccccCCcccccceeecCCCCCc-CcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018801 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHP-FCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 194 ~~~C~ICle~v~~k~~~~~~~fgil~~C~H~-FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
+..|.|||+...+ -.+| .|+|. -|.+|-.. ...||+||+.+..
T Consensus 300 ~~LC~ICmDaP~D--------CvfL-eCGHmVtCt~CGkr---------------m~eCPICRqyi~r 343 (350)
T KOG4275|consen 300 RRLCAICMDAPRD--------CVFL-ECGHMVTCTKCGKR---------------MNECPICRQYIVR 343 (350)
T ss_pred HHHHHHHhcCCcc--------eEEe-ecCcEEeehhhccc---------------cccCchHHHHHHH
Confidence 5679999998543 2455 69995 58888422 2389999986543
No 106
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=88.59 E-value=0.3 Score=48.70 Aligned_cols=37 Identities=22% Similarity=0.586 Sum_probs=25.7
Q ss_pred CcCcHHHHHHHhhhCCCCCCccc--cccccCCCCccccc
Q 018801 223 HPFCISCIRNWRSSSPTSGMDVN--TALRACPICRKLSY 259 (350)
Q Consensus 223 H~FC~~CI~~W~~~~~~~~~~~~--~~~~~CP~CR~~~~ 259 (350)
-..|++|+-+|..++|+..-... ...-.||+||++|=
T Consensus 313 PmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 313 PMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred chHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 34489999999998885321111 13568999999874
No 107
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=87.76 E-value=0.38 Score=28.93 Aligned_cols=20 Identities=40% Similarity=0.944 Sum_probs=17.5
Q ss_pred ccccccccc-cCCCCCCCCCCC
Q 018801 5 VLCKFFAHG-ACLKGEHCEFSH 25 (350)
Q Consensus 5 ~~C~~f~~G-~C~~G~~C~f~H 25 (350)
.+|.|.+.| .|+. +.|.|.|
T Consensus 1 ~lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 1 PLCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCCccccCCCeeCC-CCCCccc
Confidence 479999998 9975 8999999
No 108
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.11 E-value=0.24 Score=49.00 Aligned_cols=49 Identities=33% Similarity=0.635 Sum_probs=35.1
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeec
Q 018801 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIP 263 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~p 263 (350)
+...-|.||++..++ +..+| |+|+-| |+.--..- .+||+||.....+++
T Consensus 303 ~~p~lcVVcl~e~~~--------~~fvp-cGh~cc--ct~cs~~l------------~~CPvCR~rI~~~~k 351 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS--------AVFVP-CGHVCC--CTLCSKHL------------PQCPVCRQRIRLVRK 351 (355)
T ss_pred CCCCceEEecCCccc--------eeeec-CCcEEE--chHHHhhC------------CCCchhHHHHHHHHH
Confidence 345679999998543 35664 999977 88765532 479999998765543
No 109
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.01 E-value=0.41 Score=47.31 Aligned_cols=53 Identities=23% Similarity=0.597 Sum_probs=41.3
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceee
Q 018801 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (350)
Q Consensus 190 ~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ 262 (350)
..++|..|+||.-.-.. ++...|+|--|..||.+-.-.. +.|=.|+++..-++
T Consensus 418 p~sEd~lCpICyA~pi~---------Avf~PC~H~SC~~CI~qHlmN~-----------k~CFfCktTv~~~~ 470 (489)
T KOG4692|consen 418 PDSEDNLCPICYAGPIN---------AVFAPCSHRSCYGCITQHLMNC-----------KRCFFCKTTVIDVI 470 (489)
T ss_pred CCcccccCcceecccch---------hhccCCCCchHHHHHHHHHhcC-----------CeeeEecceeeehh
Confidence 45789999999986332 5666799999999999988654 47999998876443
No 110
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=85.03 E-value=0.4 Score=38.57 Aligned_cols=36 Identities=28% Similarity=0.594 Sum_probs=29.0
Q ss_pred hhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHH
Q 018801 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIR 231 (350)
Q Consensus 189 ~~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~ 231 (350)
+.-+++..|.||-..|..+ .|.+.| |+|+|+..|++
T Consensus 73 v~i~~~~~C~vC~k~l~~~------~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGNS------VFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred EEECCCCCccCcCCcCCCc------eEEEeC-CCeEEeccccc
Confidence 3445678899999998754 588886 88999999985
No 111
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=84.99 E-value=0.35 Score=49.77 Aligned_cols=25 Identities=36% Similarity=0.874 Sum_probs=20.8
Q ss_pred CCCCCccCCC---CCCCCCCCccCCCCC
Q 018801 32 NNICTYYQKG---FCSYGSRCRYEHVKP 56 (350)
Q Consensus 32 ~~~C~~f~~G---~C~~G~~C~y~H~~~ 56 (350)
..+|.-...| .|.||++|+|.|...
T Consensus 76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ 103 (614)
T KOG2333|consen 76 NRLCPSLIQGDISKCSFGDNCRFVHDIE 103 (614)
T ss_pred hccChHhhcCCCccCcccccccccccHH
Confidence 4578877766 799999999999975
No 112
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.38 E-value=0.97 Score=43.43 Aligned_cols=52 Identities=27% Similarity=0.647 Sum_probs=38.3
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccc
Q 018801 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (350)
Q Consensus 194 ~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (350)
-.+|.||-+.+-.. ..++.-.+| .|+|+||..|+.+-..... -.||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~--~~~~~p~~l-~c~h~~c~~c~~~l~~~~~----------i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSE--DGDHIPRVL-KCGHTICQNCASKLLGNSR----------ILCPFCRETT 54 (296)
T ss_pred CCceeecCcccccc--CcccCCccc-ccCceehHhHHHHHhcCce----------eeccCCCCcc
Confidence 35799999984432 334444566 4999999999998776542 4789999987
No 113
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=84.35 E-value=1.2 Score=39.34 Aligned_cols=61 Identities=18% Similarity=0.433 Sum_probs=41.2
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcC---cHHHHHHHhhhCCCCCCccccccccCCCCcccccee---ecCc
Q 018801 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPF---CISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV---IPSV 265 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~F---C~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v---~ps~ 265 (350)
..+.+|=||.+. .+ + + --.=.|..+. +.+|+.+|.+.+. ..+|++|..++.+. -|-.
T Consensus 6 ~~~~~CRIC~~~-~~-~---~---~~PC~CkGs~k~VH~sCL~rWi~~s~---------~~~CeiC~~~Y~i~~~~kpl~ 68 (162)
T PHA02825 6 LMDKCCWICKDE-YD-V---V---TNYCNCKNENKIVHKECLEEWINTSK---------NKSCKICNGPYNIKKNYKKCT 68 (162)
T ss_pred CCCCeeEecCCC-CC-C---c---cCCcccCCCchHHHHHHHHHHHhcCC---------CCcccccCCeEEEEEecCCCc
Confidence 356789999987 21 1 1 1123466644 8999999998764 36899999999864 3445
Q ss_pred cccc
Q 018801 266 IWYY 269 (350)
Q Consensus 266 ~w~~ 269 (350)
.|.-
T Consensus 69 ~W~~ 72 (162)
T PHA02825 69 KWRC 72 (162)
T ss_pred cccc
Confidence 5643
No 114
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=81.80 E-value=0.8 Score=49.07 Aligned_cols=49 Identities=29% Similarity=0.669 Sum_probs=36.2
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccc
Q 018801 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (350)
++.+|+||++.+++. ++..|+|.||..|+..-...+. ....||+|+...
T Consensus 20 k~lEc~ic~~~~~~p---------~~~kc~~~~l~~~~n~~f~~~~--------~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 20 KILECPICLEHVKEP---------SLLKCDHIFLKFCLNKLFESKK--------GPKQCALCKSDI 68 (684)
T ss_pred hhccCCceeEEeecc---------chhhhhHHHHhhhhhceeeccC--------ccccchhhhhhh
Confidence 578999999998863 5668999999999875222221 125899999544
No 115
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=81.45 E-value=0.7 Score=49.91 Aligned_cols=46 Identities=30% Similarity=0.857 Sum_probs=34.3
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
..|.||++ .+. .++..|+|.||.+|+.+-...... ..||+||....
T Consensus 455 ~~c~ic~~--~~~--------~~it~c~h~~c~~c~~~~i~~~~~---------~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD--LDS--------FFITRCGHDFCVECLKKSIQQSEN---------APCPLCRNVLK 500 (674)
T ss_pred cccccccc--ccc--------ceeecccchHHHHHHHhccccccC---------CCCcHHHHHHH
Confidence 89999999 343 355579999999999875543321 27999998764
No 116
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=81.43 E-value=1.3 Score=43.82 Aligned_cols=55 Identities=22% Similarity=0.597 Sum_probs=39.4
Q ss_pred hhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccccee
Q 018801 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFV 261 (350)
Q Consensus 189 ~~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v 261 (350)
.+..++..|-||-+.+. |.-+..|+|--|.-|--.-|.--. .+.||+||+.-.-|
T Consensus 56 dtDEen~~C~ICA~~~T---------Ys~~~PC~H~~CH~Ca~RlRALY~---------~K~C~~CrTE~e~V 110 (493)
T COG5236 56 DTDEENMNCQICAGSTT---------YSARYPCGHQICHACAVRLRALYM---------QKGCPLCRTETEAV 110 (493)
T ss_pred ccccccceeEEecCCce---------EEEeccCCchHHHHHHHHHHHHHh---------ccCCCccccccceE
Confidence 34556788999999753 344446999999999765553221 36999999987653
No 117
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.98 E-value=0.99 Score=42.87 Aligned_cols=70 Identities=20% Similarity=0.398 Sum_probs=49.3
Q ss_pred ccCccccccccccccCCcccccceeecCCC-----CCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCcc
Q 018801 192 SQEIECSVCLDRVLSKPTAAERKFGLLSEC-----DHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVI 266 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C-----~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~ 266 (350)
..|..|=||+.. .++. ++-.-...| +|--+..||..|.+.++. + ......+||+|+++.-.|.|..-
T Consensus 18 e~eR~CWiCF~T-deDn----~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~-~--n~~q~V~C~QCqTEYiiv~P~l~ 89 (293)
T KOG3053|consen 18 ELERCCWICFAT-DEDN----RLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQR-G--NPLQTVSCPQCQTEYIIVFPQLG 89 (293)
T ss_pred ccceeEEEEecc-Cccc----chhhhcccccccCccHHHHHHHHHHHHhHHhc-C--CCCceeechhhcchheeeccccC
Confidence 356789999997 2221 221233346 577889999999998874 1 12345699999999999999887
Q ss_pred ccc
Q 018801 267 WYY 269 (350)
Q Consensus 267 w~~ 269 (350)
|+.
T Consensus 90 ~~~ 92 (293)
T KOG3053|consen 90 PFD 92 (293)
T ss_pred hHH
Confidence 654
No 118
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.53 E-value=1.6 Score=41.25 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=45.6
Q ss_pred hcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc--eeecC
Q 018801 190 RRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY--FVIPS 264 (350)
Q Consensus 190 ~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~--~v~ps 264 (350)
..|+-..|+||-+.+.+ . -+-++|..|+|+||++|..+..... ..||+|-.+.. -||+-
T Consensus 217 a~s~ryiCpvtrd~LtN-t----~~ca~Lr~sg~Vv~~ecvEklir~D-----------~v~pv~d~plkdrdiI~L 277 (303)
T KOG3039|consen 217 AASKRYICPVTRDTLTN-T----TPCAVLRPSGHVVTKECVEKLIRKD-----------MVDPVTDKPLKDRDIIGL 277 (303)
T ss_pred hhccceecccchhhhcC-c----cceEEeccCCcEeeHHHHHHhcccc-----------ccccCCCCcCcccceEee
Confidence 44567899999998554 3 2568999999999999999988643 48999988775 25553
No 119
>PHA02862 5L protein; Provisional
Probab=79.97 E-value=1 Score=39.26 Aligned_cols=48 Identities=23% Similarity=0.527 Sum_probs=33.7
Q ss_pred CccccccccccccCCcccccceeecCCC-----CCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018801 194 EIECSVCLDRVLSKPTAAERKFGLLSEC-----DHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 194 ~~~C~ICle~v~~k~~~~~~~fgil~~C-----~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
+..|=||.+.- +. . + ..| .-.-+.+|+.+|.+..+ ...||+|+.++.+
T Consensus 2 ~diCWIC~~~~-~e-----~---~-~PC~C~GS~K~VHq~CL~~WIn~S~---------k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVC-DE-----R---N-NFCGCNEEYKVVHIKCMQLWINYSK---------KKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcC-CC-----C---c-ccccccCcchhHHHHHHHHHHhcCC---------CcCccCCCCeEEE
Confidence 46799999972 21 1 1 223 44557899999997654 3699999999874
No 120
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.74 E-value=1.2 Score=37.21 Aligned_cols=90 Identities=20% Similarity=0.361 Sum_probs=50.7
Q ss_pred CCCCCcCCccccCCCChHHHHHHHHHHHHHHHHHHHhhcccCccccccccccccCCcc------cccceeecCCCCCcCc
Q 018801 153 GDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTA------AERKFGLLSECDHPFC 226 (350)
Q Consensus 153 g~~c~~c~~~~lhP~~~~~~~~h~~~c~~~~~~~~~~~~s~~~~C~ICle~v~~k~~~------~~~~fgil~~C~H~FC 226 (350)
+..|..||+.+..+...+ |+.|----+..-+.....+......|--|+..+.+.+.. ..-+|. =+.|.+.||
T Consensus 15 P~~CpiCgLtLVss~HLA-RSyHHLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~-C~~C~~~FC 92 (112)
T TIGR00622 15 PVECPICGLTLILSTHLA-RSYHHLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPFDELKDSHRYV-CAVCKNVFC 92 (112)
T ss_pred CCcCCcCCCEEeccchHH-HhhhccCCCcccccccccccCCCCcccCcCCCCCCccccccccccccccee-CCCCCCccc
Confidence 467889998876665544 444421111111111111122345699999986554310 111233 347999999
Q ss_pred HHHHHHHhhhCCCCCCccccccccCCCCc
Q 018801 227 ISCIRNWRSSSPTSGMDVNTALRACPICR 255 (350)
Q Consensus 227 ~~CI~~W~~~~~~~~~~~~~~~~~CP~CR 255 (350)
++|=.-|...- ..||-|-
T Consensus 93 ~dCD~fiHe~L-----------h~CPGC~ 110 (112)
T TIGR00622 93 VDCDVFVHESL-----------HCCPGCI 110 (112)
T ss_pred cccchhhhhhc-----------cCCcCCC
Confidence 99977777543 4799985
No 121
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=79.24 E-value=2 Score=41.39 Aligned_cols=97 Identities=27% Similarity=0.547 Sum_probs=61.2
Q ss_pred hhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCcccc
Q 018801 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWY 268 (350)
Q Consensus 189 ~~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~w~ 268 (350)
++.+.+..|+||.|.++.- ...-+.|+ |+|.-.+.|.+.-.... .+||+|-+ .... +.+|-
T Consensus 153 ~e~~~~~ncPic~e~l~~s----~~~~~~~~-CgH~~h~~cf~e~~~~~-----------y~CP~C~~-~~d~--~~~~~ 213 (276)
T KOG1940|consen 153 VERSSEFNCPICKEYLFLS----FEDAGVLK-CGHYMHSRCFEEMICEG-----------YTCPICSK-PGDM--SHYFR 213 (276)
T ss_pred hhhcccCCCchhHHHhccc----cccCCccC-cccchHHHHHHHHhccC-----------CCCCcccc-hHHH--HHHHH
Confidence 4455566699999998753 33446674 99999999888877543 59999998 3321 22332
Q ss_pred cCchhHHHHHHH------HHhhcCCCCCCcccCCCCCCCCCCCceeeccCCCC
Q 018801 269 YTPEEKQEIIDS------YKSKLKSIDCKHFNFGNGNCPFGTSCFYKHAYTDG 315 (350)
Q Consensus 269 ~~~~ek~~li~~------yk~~~~~~~c~~f~~~~g~Cpfg~~C~y~H~~~~g 315 (350)
. -+++|.. |+..+..+-|. .|.+|.+=.|--.+..+
T Consensus 214 --~--~d~~l~~~~~p~~y~~~~~~i~cn-------dC~~~~~~k~~~l~~kc 255 (276)
T KOG1940|consen 214 --K--LDKELAGSPMPEEYKNKTQDILCN-------DCGSGTNVKYHILYHKC 255 (276)
T ss_pred --H--HHHHHhcCCCCchhhchhheeecc-------CCCCCCccceehhhhhC
Confidence 1 2344444 88777767665 45555554554444433
No 122
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=78.27 E-value=1 Score=32.91 Aligned_cols=45 Identities=31% Similarity=0.622 Sum_probs=33.0
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018801 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 194 ~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
+..|-.|... -.+ +++..|+|.-|..|-.-|+.+ .||.|-+++.+
T Consensus 7 ~~~~~~~~~~-~~~--------~~~~pCgH~I~~~~f~~~rYn-------------gCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFV-GTK--------GTVLPCGHLICDNCFPGERYN-------------GCPFCGTPFEF 51 (55)
T ss_pred ceeEEEcccc-ccc--------cccccccceeeccccChhhcc-------------CCCCCCCcccC
Confidence 4566666664 222 566679999999998877753 79999998764
No 123
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=78.07 E-value=0.68 Score=33.28 Aligned_cols=27 Identities=37% Similarity=0.860 Sum_probs=19.0
Q ss_pred cCCCCccccceeecCcccccCchhHHHHHHHHHhhcCC
Q 018801 250 ACPICRKLSYFVIPSVIWYYTPEEKQEIIDSYKSKLKS 287 (350)
Q Consensus 250 ~CP~CR~~~~~v~ps~~w~~~~~ek~~li~~yk~~~~~ 287 (350)
.||+|..++ +.+.+++||+.|+..+..
T Consensus 22 ~CPlC~r~l-----------~~e~~~~li~~~~~~i~~ 48 (54)
T PF04423_consen 22 CCPLCGRPL-----------DEEHRQELIKKYKSEIEE 48 (54)
T ss_dssp E-TTT--EE------------HHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCC-----------CHHHHHHHHHHHHHHHHh
Confidence 899999976 456779999999987654
No 124
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.30 E-value=3 Score=42.78 Aligned_cols=42 Identities=19% Similarity=0.597 Sum_probs=32.3
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCC
Q 018801 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTS 240 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~ 240 (350)
...+.+|+||++.+.. ..+..+|+|.||..|++.....+-..
T Consensus 67 ~~~~~~c~ic~~~~~~--------~~~~~~c~H~~c~~cw~~yl~~kI~~ 108 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG--------EIIGLGCGHPFCPPCWTGYLGTKIHE 108 (444)
T ss_pred CCccccCCcccCCCcc--------hhhhcCCCcHHHHHHHHHHhhheeec
Confidence 3456899999998422 24555799999999999999877543
No 125
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=76.45 E-value=2.4 Score=29.22 Aligned_cols=40 Identities=23% Similarity=0.678 Sum_probs=22.0
Q ss_pred ccccccccccCCcccccceeecC---CCCCcCcHHHHHHHhhhCCCCCCccccccccCCCC
Q 018801 197 CSVCLDRVLSKPTAAERKFGLLS---ECDHPFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (350)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~---~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (350)
|.+|.|.|.. |+.= +|+=.+...|+..+.+.... ..||.|
T Consensus 1 C~~C~~iv~~---------G~~C~~~~C~~r~H~~C~~~y~r~~~~---------~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQ---------GQRCSNRDCNVRLHDDCFKKYFRHRSN---------PKCPNC 43 (43)
T ss_dssp -TTT-SB-SS---------SEE-SS--S--EE-HHHHHHHTTT-SS----------B-TTT
T ss_pred CcccchhHee---------eccCCCCccCchHHHHHHHHHHhcCCC---------CCCcCC
Confidence 6789998764 5542 38779999999987765532 379987
No 126
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=76.20 E-value=2.1 Score=42.21 Aligned_cols=52 Identities=25% Similarity=0.586 Sum_probs=36.4
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
+|..|+.|||.+. .+++-|--- .|+.-.|.=|-..-+..-. ..||-||....
T Consensus 13 eed~cplcie~md----itdknf~pc-~cgy~ic~fc~~~irq~ln----------grcpacrr~y~ 64 (480)
T COG5175 13 EEDYCPLCIEPMD----ITDKNFFPC-PCGYQICQFCYNNIRQNLN----------GRCPACRRKYD 64 (480)
T ss_pred ccccCcccccccc----cccCCcccC-CcccHHHHHHHHHHHhhcc----------CCChHhhhhcc
Confidence 4456999999843 235555544 3999988888666665432 38999998765
No 127
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=75.80 E-value=1.9 Score=30.21 Aligned_cols=42 Identities=33% Similarity=0.750 Sum_probs=25.0
Q ss_pred ccccccccccCCcccccceeecCCCC--C---cCcHHHHHHHhhhCCCCCCccccccccCCCC
Q 018801 197 CSVCLDRVLSKPTAAERKFGLLSECD--H---PFCISCIRNWRSSSPTSGMDVNTALRACPIC 254 (350)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~~C~--H---~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~C 254 (350)
|=||++.-.+.+ .++..|. = .-..+|+.+|...+. ..+|++|
T Consensus 1 CrIC~~~~~~~~-------~li~pC~C~Gs~~~vH~~CL~~W~~~~~---------~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-------PLISPCRCKGSMKYVHRSCLERWIRESG---------NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--------EE-SSS-SSCCGSEECCHHHHHHHHHT----------SB-TTT
T ss_pred CeEeCCcCCCCC-------ceecccccCCCcchhHHHHHHHHHHhcC---------CCcCCCC
Confidence 669999743321 2334453 2 457789999998753 2579887
No 128
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.88 E-value=0.22 Score=44.18 Aligned_cols=63 Identities=24% Similarity=0.492 Sum_probs=40.4
Q ss_pred CCCCCcCCccccCCCChHHHHHHHHHHHHHHH--HHHHhhcccCccccccccccccCCcccccceeecCCCCCcC
Q 018801 153 GDTCPTCGKQCLHPFRPEEREEHMKSCEKKQK--HLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPF 225 (350)
Q Consensus 153 g~~c~~c~~~~lhP~~~~~~~~h~~~c~~~~~--~~~~~~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~F 225 (350)
|..|+.|.|.++. .|.+ -|.-.|+.+-+ +-+.+.....-+|.||||.+.. ...++-|| |-=+|
T Consensus 138 g~KCPvC~K~V~s-Dd~e---~HlvMCLtkPrlsYNdDVL~ddkGECvICLEdL~~-----GdtIARLP-CLCIY 202 (205)
T KOG0801|consen 138 GMKCPVCHKVVPS-DDAE---IHLVMCLTKPRLSYNDDVLKDDKGECVICLEDLEA-----GDTIARLP-CLCIY 202 (205)
T ss_pred CccCCccccccCC-Ccce---EEEEEEecccccccccchhcccCCcEEEEhhhccC-----CCceeccc-eEEEe
Confidence 5778899888763 2333 46666665443 3355666666899999999653 34567776 64433
No 129
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=74.42 E-value=1.9 Score=42.29 Aligned_cols=37 Identities=27% Similarity=0.598 Sum_probs=28.9
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhC
Q 018801 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSS 237 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~ 237 (350)
....|+||+..+.+ | -+|.-=|.+||..||-+.....
T Consensus 299 ~~~~CpvClk~r~N-p-------tvl~vSGyVfCY~Ci~~Yv~~~ 335 (357)
T KOG0826|consen 299 DREVCPVCLKKRQN-P-------TVLEVSGYVFCYPCIFSYVVNY 335 (357)
T ss_pred ccccChhHHhccCC-C-------ceEEecceEEeHHHHHHHHHhc
Confidence 44789999999654 3 3555569999999999999854
No 130
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=73.67 E-value=3.7 Score=32.09 Aligned_cols=59 Identities=24% Similarity=0.430 Sum_probs=26.7
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceee
Q 018801 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVI 262 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ 262 (350)
.....|.||-|.|--.. ....|..-..|+-.-|..|..-=++... ..||+|++.....-
T Consensus 7 ~~~qiCqiCGD~VGl~~--~Ge~FVAC~eC~fPvCr~CyEYErkeg~----------q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTE--NGEVFVACHECAFPVCRPCYEYERKEGN----------QVCPQCKTRYKRHK 65 (80)
T ss_dssp -SS-B-SSS--B--B-S--SSSB--S-SSS-----HHHHHHHHHTS-----------SB-TTT--B----T
T ss_pred cCCcccccccCccccCC--CCCEEEEEcccCCccchhHHHHHhhcCc----------ccccccCCCccccc
Confidence 34568999999987554 4668998889999999999886665432 59999998876543
No 131
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=73.48 E-value=1.6 Score=44.30 Aligned_cols=35 Identities=34% Similarity=0.836 Sum_probs=28.7
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhh
Q 018801 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRS 235 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~ 235 (350)
++++.|+||.. +++.| -||+ |+|..|.-|.+.-..
T Consensus 2 eeelkc~vc~~-f~~ep-------iil~-c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGS-FYREP-------IILP-CSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehh-hccCc-------eEee-cccHHHHHHHHhhcc
Confidence 46789999998 58777 6775 999999999987543
No 132
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.25 E-value=1.3 Score=42.88 Aligned_cols=25 Identities=36% Similarity=1.144 Sum_probs=22.5
Q ss_pred CCCCccC-CCCCCCCCCCccCCCCCC
Q 018801 33 NICTYYQ-KGFCSYGSRCRYEHVKPS 57 (350)
Q Consensus 33 ~~C~~f~-~G~C~~G~~C~y~H~~~~ 57 (350)
.||+-|. +|+|.||+.|.|+|....
T Consensus 187 DicKdykeTgycg~gdSckFlh~r~D 212 (313)
T KOG1813|consen 187 DICKDYKETGYCGYGDSCKFLHDRSD 212 (313)
T ss_pred hhhhhhHhhCcccccchhhhhhhhhh
Confidence 4899997 999999999999999874
No 133
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=69.21 E-value=4.7 Score=39.40 Aligned_cols=67 Identities=25% Similarity=0.665 Sum_probs=44.7
Q ss_pred cCccccccccccccCCcccccceeecCCC--CCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCcccccC
Q 018801 193 QEIECSVCLDRVLSKPTAAERKFGLLSEC--DHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C--~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~w~~~ 270 (350)
.-++|+||.+.| ..| |. -| +|.-|-+|-.+-. ..||.||.++..| -
T Consensus 47 ~lleCPvC~~~l-~~P--------i~-QC~nGHlaCssC~~~~~--------------~~CP~Cr~~~g~~-R------- 94 (299)
T KOG3002|consen 47 DLLDCPVCFNPL-SPP--------IF-QCDNGHLACSSCRTKVS--------------NKCPTCRLPIGNI-R------- 94 (299)
T ss_pred hhccCchhhccC-ccc--------ce-ecCCCcEehhhhhhhhc--------------ccCCccccccccH-H-------
Confidence 347899999985 444 44 37 6999999976322 4899999987643 1
Q ss_pred chhHHHHHHHHHhhcCCCCCCcccCC
Q 018801 271 PEEKQEIIDSYKSKLKSIDCKHFNFG 296 (350)
Q Consensus 271 ~~ek~~li~~yk~~~~~~~c~~f~~~ 296 (350)
.-..+++|+.- -.+|||-..|
T Consensus 95 ~~amEkV~e~~-----~vpC~~~~~G 115 (299)
T KOG3002|consen 95 CRAMEKVAEAV-----LVPCKNAKLG 115 (299)
T ss_pred HHHHHHHHHhc-----eecccccccC
Confidence 12244454433 3888877765
No 134
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=68.71 E-value=1.7 Score=40.95 Aligned_cols=55 Identities=31% Similarity=0.659 Sum_probs=44.3
Q ss_pred cccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCC--CCcccc
Q 018801 191 RSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACP--ICRKLS 258 (350)
Q Consensus 191 ~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP--~CR~~~ 258 (350)
+.+|..|+||-...|-.| +-+|-|-|.|-|--|-+|...-.+..+ -.|| .|-+..
T Consensus 7 ~~~d~~CPvCksDrYLnP---dik~linPECyHrmCESCvdRIFs~Gp----------AqCP~~gC~kIL 63 (314)
T COG5220 7 EMEDRRCPVCKSDRYLNP---DIKILINPECYHRMCESCVDRIFSRGP----------AQCPYKGCGKIL 63 (314)
T ss_pred hhhcccCCccccccccCC---CeEEEECHHHHHHHHHHHHHHHhcCCC----------CCCCCccHHHHH
Confidence 446778999999988877 457778888999999999998887654 3899 886554
No 135
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.43 E-value=2.5 Score=46.50 Aligned_cols=36 Identities=28% Similarity=0.569 Sum_probs=29.8
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhh
Q 018801 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRS 235 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~ 235 (350)
.+..|.||+-.++.+| |-+-+ |+|.|..+||.+=..
T Consensus 816 p~d~C~~C~~~ll~~p------F~vf~-CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIKP------FYVFP-CGHCFHRDCLIRHVL 851 (911)
T ss_pred CccchHHhcchhhcCc------ceeee-ccchHHHHHHHHHHH
Confidence 5688999999999875 67765 999999999876443
No 136
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=65.96 E-value=2.1 Score=41.58 Aligned_cols=56 Identities=27% Similarity=0.620 Sum_probs=38.6
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHH------------------HhhhCCCCCCccccccccCCCC
Q 018801 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN------------------WRSSSPTSGMDVNTALRACPIC 254 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~------------------W~~~~~~~~~~~~~~~~~CP~C 254 (350)
....|.|||=-+.++| -|-+. .|.|-|.+.|+.. |++... .+..-.||+|
T Consensus 114 p~gqCvICLygfa~~~-----~ft~T-~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~------~~~eavcpVc 181 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSP-----AFTVT-ACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMK------EQVEAVCPVC 181 (368)
T ss_pred CCCceEEEEEeecCCC-----ceeee-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhHhhhhhHh
Confidence 4588999999887765 24444 6999999999754 443221 1223359999
Q ss_pred ccccce
Q 018801 255 RKLSYF 260 (350)
Q Consensus 255 R~~~~~ 260 (350)
|..+.+
T Consensus 182 re~i~~ 187 (368)
T KOG4445|consen 182 RERIKI 187 (368)
T ss_pred hhhccc
Confidence 988754
No 137
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=64.04 E-value=2.4 Score=48.33 Aligned_cols=51 Identities=31% Similarity=0.777 Sum_probs=39.9
Q ss_pred hhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccc
Q 018801 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (350)
Q Consensus 189 ~~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (350)
...+.-..|.||++.+-. +|.+-.|+|.+|-.|+.-|...+ ..||+|....
T Consensus 1148 ~~~~~~~~c~ic~dil~~--------~~~I~~cgh~~c~~c~~~~l~~~-----------s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1148 MNLSGHFVCEICLDILRN--------QGGIAGCGHEPCCRCDELWLYAS-----------SRCPICKSIK 1198 (1394)
T ss_pred HHhhcccchHHHHHHHHh--------cCCeeeechhHhhhHHHHHHHHh-----------ccCcchhhhh
Confidence 455666799999998653 34555799999999999999876 3899998543
No 138
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=63.79 E-value=3.4 Score=40.87 Aligned_cols=24 Identities=46% Similarity=1.171 Sum_probs=16.6
Q ss_pred CCCCccCCCCCCCCCCCccCCCCC
Q 018801 33 NICTYYQKGFCSYGSRCRYEHVKP 56 (350)
Q Consensus 33 ~~C~~f~~G~C~~G~~C~y~H~~~ 56 (350)
.+|.||..|.|..|..|.|.|.++
T Consensus 162 ~Icsf~v~geckRG~ec~yrhEkp 185 (377)
T KOG0153|consen 162 HICSFFVKGECKRGAECPYRHEKP 185 (377)
T ss_pred ccccceeeccccccccccccccCC
Confidence 366677777776677777777766
No 139
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=63.55 E-value=6.6 Score=38.04 Aligned_cols=50 Identities=28% Similarity=0.626 Sum_probs=39.3
Q ss_pred cccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 196 ECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 196 ~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
.|++|-..+|-.|. -+..+..|+|.-|-+|...-....+ ..||.|-+...
T Consensus 2 ~Cp~CKt~~Y~np~----lk~~in~C~H~lCEsCvd~iF~~g~----------~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPD----LKLMINECGHRLCESCVDRIFSLGP----------AQCPECMVILR 51 (300)
T ss_pred CCcccccceecCcc----ceeeeccccchHHHHHHHHHHhcCC----------CCCCcccchhh
Confidence 59999999888763 3344557999999999998887654 38999987654
No 140
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=62.70 E-value=3.8 Score=29.16 Aligned_cols=48 Identities=27% Similarity=0.647 Sum_probs=22.1
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccc
Q 018801 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (350)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~ 257 (350)
+.|+|-...| .-| +-..+|.|.-|++ +..|...... +..-.||+|.++
T Consensus 3 L~CPls~~~i-~~P-------~Rg~~C~H~~CFD-l~~fl~~~~~------~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRI-RIP-------VRGKNCKHLQCFD-LESFLESNQR------TPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB--SSE-------EEETT--SS--EE-HHHHHHHHHH------S---B-TTT---
T ss_pred eeCCCCCCEE-EeC-------ccCCcCcccceEC-HHHHHHHhhc------cCCeECcCCcCc
Confidence 5788988874 445 5556799998876 4445544321 112589999863
No 141
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.96 E-value=6.3 Score=35.66 Aligned_cols=64 Identities=20% Similarity=0.490 Sum_probs=39.1
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018801 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
..||||+..-++...+ +.. --...|+..|..-|+..|...-..+.-.-+-+-..||-|-.++..
T Consensus 166 ~~cgicyayqldGTip-Dqt-CdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIP-DQT-CDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hcccceeeeecCCccc-ccc-ccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 6689998765442211 111 122359999999999999975332111112244589999988753
No 142
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.31 E-value=19 Score=33.85 Aligned_cols=57 Identities=21% Similarity=0.448 Sum_probs=38.5
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
-+-.|..|--.+.+.. .+--.|-|.|..+|+.+|...-... ..-.-..||-|-+++.
T Consensus 49 Y~pNC~LC~t~La~gd-------t~RLvCyhlfHW~ClneraA~lPan---TAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGD-------TTRLVCYHLFHWKCLNERAANLPAN---TAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCCCceeCCccccCc-------ceeehhhhhHHHHHhhHHHhhCCCc---CCCCcccCCCCCCccC
Confidence 4567888887755433 2333699999999999998754310 0112358999998863
No 143
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=58.52 E-value=6.4 Score=42.96 Aligned_cols=56 Identities=11% Similarity=0.126 Sum_probs=36.3
Q ss_pred ccccccccccccCCcccccceeec--CCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 195 IECSVCLDRVLSKPTAAERKFGLL--SECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil--~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
.+|.||.-.+- .| ...|+++ .+|.|.||..||.+|++.-- ..++.-.|+.|..-+.
T Consensus 97 ~Ss~~C~~E~S-~~---~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~-----~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 97 DTSPVCEKEHS-PD---VDSSNICPVQTHVENQCPNCLKSCNDQLE-----ESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccchhheecC-Cc---ccccCcCchhhhhhhhhhHHHHHHHHHhh-----ccccccccccHHHHhh
Confidence 45566654422 22 2345554 48999999999999998643 2344557888877664
No 144
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=58.23 E-value=5.5 Score=39.50 Aligned_cols=24 Identities=33% Similarity=1.013 Sum_probs=22.0
Q ss_pred CccccccccccCCCCCCCCCCCCC
Q 018801 4 RVLCKFFAHGACLKGEHCEFSHDW 27 (350)
Q Consensus 4 ~~~C~~f~~G~C~~G~~C~f~H~~ 27 (350)
..+|.||..|.|++|+.|.|.|+.
T Consensus 161 p~Icsf~v~geckRG~ec~yrhEk 184 (377)
T KOG0153|consen 161 PHICSFFVKGECKRGAECPYRHEK 184 (377)
T ss_pred CccccceeeccccccccccccccC
Confidence 578999999999999999999963
No 145
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.23 E-value=5.7 Score=38.57 Aligned_cols=38 Identities=24% Similarity=0.446 Sum_probs=26.5
Q ss_pred CCCcCcHHHHHHHhhhCCCCCCccc---cccccCCCCccccc
Q 018801 221 CDHPFCISCIRNWRSSSPTSGMDVN---TALRACPICRKLSY 259 (350)
Q Consensus 221 C~H~FC~~CI~~W~~~~~~~~~~~~---~~~~~CP~CR~~~~ 259 (350)
|.-..|.+|+-+|.-.+++.. +.. ...-+||+||+.+-
T Consensus 325 crp~wc~~cla~~f~~rq~~v-~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNV-YRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccch-hHHHHHhcCCCCcchhhceE
Confidence 566778999999998877421 110 13468999999874
No 146
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=54.28 E-value=4.2 Score=41.02 Aligned_cols=43 Identities=28% Similarity=0.733 Sum_probs=0.0
Q ss_pred ccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecC
Q 018801 212 ERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (350)
Q Consensus 212 ~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps 264 (350)
.+.|..| +|+|++=+ ..|....+ .+...+.||+||+...+ +|-
T Consensus 301 ~qP~VYl-~CGHVhG~---h~Wg~~~~-----~~~~~r~CPlCr~~g~~-V~L 343 (416)
T PF04710_consen 301 RQPWVYL-NCGHVHGY---HNWGQDSD-----RDPRSRTCPLCRQVGPY-VPL 343 (416)
T ss_dssp -----------------------------------------------------
T ss_pred cCceeec-cccceeee---cccccccc-----cccccccCCCccccCCc-eeE
Confidence 3556777 69998754 46765432 12236899999999987 443
No 147
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=52.89 E-value=9.3 Score=37.66 Aligned_cols=85 Identities=21% Similarity=0.369 Sum_probs=46.7
Q ss_pred CCCCCcCCccccCCCChHHHHHHHHHHHHHHHHHHHhhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHH
Q 018801 153 GDTCPTCGKQCLHPFRPEEREEHMKSCEKKQKHLEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRN 232 (350)
Q Consensus 153 g~~c~~c~~~~lhP~~~~~~~~h~~~c~~~~~~~~~~~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~ 232 (350)
+..|+.|+....... ...|+.|----.+............+.-|=.|.+....++ +|.-- .|.+.||++|=.-
T Consensus 290 P~eCpiC~ltLVss~-hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~-----~y~C~-~Ck~~FCldCDv~ 362 (378)
T KOG2807|consen 290 PIECPICSLTLVSSP-HLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGELLSSG-----RYRCE-SCKNVFCLDCDVF 362 (378)
T ss_pred CccCCccceeEecch-HHHHHHHhhcCCcchhhccccccCCCcceeeeccccCCCC-----cEEch-hccceeeccchHH
Confidence 567899998744332 2334444211111111111112223444999977655443 44444 6999999999654
Q ss_pred HhhhCCCCCCccccccccCCCCc
Q 018801 233 WRSSSPTSGMDVNTALRACPICR 255 (350)
Q Consensus 233 W~~~~~~~~~~~~~~~~~CP~CR 255 (350)
-..+- -.||-|-
T Consensus 363 iHesL-----------h~CpgCe 374 (378)
T KOG2807|consen 363 IHESL-----------HNCPGCE 374 (378)
T ss_pred HHhhh-----------hcCCCcC
Confidence 44332 2799886
No 148
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=49.73 E-value=25 Score=30.35 Aligned_cols=56 Identities=23% Similarity=0.625 Sum_probs=39.3
Q ss_pred hhcccCccccccccccccCCcccccceeec-CCCCCcCcHHHHHH-HhhhCCCCCCccccccccCCCCccccc
Q 018801 189 LRRSQEIECSVCLDRVLSKPTAAERKFGLL-SECDHPFCISCIRN-WRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 189 ~~~s~~~~C~ICle~v~~k~~~~~~~fgil-~~C~H~FC~~CI~~-W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
+....-.+|.||-|.-. |.+|--. .-|+..-|--|--+ |.-.+. -..||.|++.|.
T Consensus 75 F~d~~lYeCnIC~etS~------ee~FLKPneCCgY~iCn~Cya~LWK~~~~---------ypvCPvCkTSFK 132 (140)
T PF05290_consen 75 FLDPKLYECNICKETSA------EERFLKPNECCGYSICNACYANLWKFCNL---------YPVCPVCKTSFK 132 (140)
T ss_pred ecCCCceeccCcccccc------hhhcCCcccccchHHHHHHHHHHHHHccc---------CCCCCccccccc
Confidence 34446789999999733 3344332 24899999999665 775543 369999999875
No 149
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=45.33 E-value=9.1 Score=27.21 Aligned_cols=32 Identities=44% Similarity=0.936 Sum_probs=21.8
Q ss_pred eecCCC-CCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 216 GLLSEC-DHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 216 gil~~C-~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
|++. | +|-.|+.|+..-.+..+ .||+|..+..
T Consensus 14 ~Li~-C~dHYLCl~CLt~ml~~s~-----------~C~iC~~~LP 46 (50)
T PF03854_consen 14 GLIK-CSDHYLCLNCLTLMLSRSD-----------RCPICGKPLP 46 (50)
T ss_dssp SEEE--SS-EEEHHHHHHT-SSSS-----------EETTTTEE--
T ss_pred Ceee-ecchhHHHHHHHHHhcccc-----------CCCcccCcCc
Confidence 5664 5 79999999998887653 8999987653
No 150
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=44.63 E-value=14 Score=22.77 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=5.8
Q ss_pred cccccccccc
Q 018801 196 ECSVCLDRVL 205 (350)
Q Consensus 196 ~C~ICle~v~ 205 (350)
+|+-|-..|.
T Consensus 2 ~CP~C~~~V~ 11 (26)
T PF10571_consen 2 TCPECGAEVP 11 (26)
T ss_pred cCCCCcCCch
Confidence 4666666553
No 151
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=43.63 E-value=10 Score=36.13 Aligned_cols=23 Identities=39% Similarity=0.899 Sum_probs=11.8
Q ss_pred CCCccCCCCCCCCCCCccCCCCC
Q 018801 34 ICTYYQKGFCSYGSRCRYEHVKP 56 (350)
Q Consensus 34 ~C~~f~~G~C~~G~~C~y~H~~~ 56 (350)
+|..|..+.|.+|..|-|.|...
T Consensus 154 ~C~~~e~~~C~rG~~CnFmH~k~ 176 (260)
T KOG2202|consen 154 ICGQFERTECSRGGACNFMHVKR 176 (260)
T ss_pred hhcccccccCCCCCcCcchhhhh
Confidence 44555555555555555555543
No 152
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=40.99 E-value=5.1 Score=28.87 Aligned_cols=40 Identities=20% Similarity=0.503 Sum_probs=24.9
Q ss_pred cccc--ccccccccCCcccccceeecCCCCCcCcHHHHHHHhh
Q 018801 195 IECS--VCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRS 235 (350)
Q Consensus 195 ~~C~--ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~ 235 (350)
.-|+ =|...|..... .......-+.|+|.||+.|-..|..
T Consensus 19 ~~CP~~~C~~~~~~~~~-~~~~~v~C~~C~~~fC~~C~~~~H~ 60 (64)
T smart00647 19 KWCPAPDCSAAIIVTEE-EGCNRVTCPKCGFSFCFRCKVPWHS 60 (64)
T ss_pred cCCCCCCCcceEEecCC-CCCCeeECCCCCCeECCCCCCcCCC
Confidence 3477 66554433211 1223355558999999999999963
No 153
>PLN02189 cellulose synthase
Probab=40.65 E-value=28 Score=39.42 Aligned_cols=60 Identities=23% Similarity=0.474 Sum_probs=44.6
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecC
Q 018801 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps 264 (350)
....|.||-|.|--+ .....|..-..|+-.-|..|-.-=|+... .+||+|++.....-.|
T Consensus 33 ~~~~C~iCgd~vg~~--~~g~~fvaC~~C~fpvCr~Cyeyer~eg~----------q~CpqCkt~Y~r~kgs 92 (1040)
T PLN02189 33 DGQVCEICGDEIGLT--VDGDLFVACNECGFPVCRPCYEYERREGT----------QNCPQCKTRYKRLKGS 92 (1040)
T ss_pred cCccccccccccCcC--CCCCEEEeeccCCCccccchhhhhhhcCC----------ccCcccCCchhhccCC
Confidence 456899999997654 34668888878999999999954443322 4999999998855433
No 154
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=38.46 E-value=21 Score=25.69 Aligned_cols=14 Identities=36% Similarity=0.973 Sum_probs=7.9
Q ss_pred cCCCCCcCcHHHHH
Q 018801 218 LSECDHPFCISCIR 231 (350)
Q Consensus 218 l~~C~H~FC~~CI~ 231 (350)
=+.|.+.||++|=.
T Consensus 24 C~~C~~~FC~dCD~ 37 (51)
T PF07975_consen 24 CPKCKNHFCIDCDV 37 (51)
T ss_dssp -TTTT--B-HHHHH
T ss_pred CCCCCCccccCcCh
Confidence 35799999999943
No 155
>PLN02195 cellulose synthase A
Probab=37.65 E-value=36 Score=38.37 Aligned_cols=56 Identities=21% Similarity=0.405 Sum_probs=42.9
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccc
Q 018801 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSY 259 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~ 259 (350)
|....|-||-|.|--+. ....|..-..|+-.-|..|-.-=|+.. ...||+|++...
T Consensus 4 ~~~~~c~~cgd~~~~~~--~g~~fvaC~eC~~pvCrpCyeyer~eg----------~q~CpqCkt~Yk 59 (977)
T PLN02195 4 SGAPICATCGEEVGVDS--NGEAFVACHECSYPLCKACLEYEIKEG----------RKVCLRCGGPYD 59 (977)
T ss_pred CCCccceecccccCcCC--CCCeEEEeccCCCccccchhhhhhhcC----------CccCCccCCccc
Confidence 44568999999876543 456788888899999999995544433 259999999887
No 156
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=36.72 E-value=9 Score=42.09 Aligned_cols=34 Identities=21% Similarity=0.621 Sum_probs=25.2
Q ss_pred CccccccccccccCCcccccceeecCCCCCcCcHHHHHHHh
Q 018801 194 EIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR 234 (350)
Q Consensus 194 ~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~ 234 (350)
...|-.|.-.++.- .-+=+-|++.+|++|++.|.
T Consensus 229 ~~mC~~C~~tlfn~-------hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 229 REMCDRCETTLFNI-------HWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred chhhhhhcccccce-------eEEccccCCeeeecchhhcc
Confidence 45688887765431 24556799999999999993
No 157
>PLN02436 cellulose synthase A
Probab=36.45 E-value=36 Score=38.77 Aligned_cols=61 Identities=25% Similarity=0.484 Sum_probs=44.8
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecC
Q 018801 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps 264 (350)
.....|.||-|.|--. .....|..=..|+-.-|..|-.-=|+.. ..+||+|++.....-.|
T Consensus 34 ~~~~iCqICGD~Vg~t--~dGe~FVACn~C~fpvCr~Cyeyer~eg----------~~~Cpqckt~Y~r~kgs 94 (1094)
T PLN02436 34 LSGQTCQICGDEIELT--VDGEPFVACNECAFPVCRPCYEYERREG----------NQACPQCKTRYKRIKGS 94 (1094)
T ss_pred cCCccccccccccCcC--CCCCEEEeeccCCCccccchhhhhhhcC----------CccCcccCCchhhccCC
Confidence 3456899999997654 3466888877799999999995444332 24999999998854433
No 158
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.90 E-value=16 Score=33.77 Aligned_cols=40 Identities=43% Similarity=0.833 Sum_probs=26.8
Q ss_pred ccccccccccCCcccccceeecCCCCC-cCcHHHHHHHhhhCCCCCCccccccccCCCCccccce
Q 018801 197 CSVCLDRVLSKPTAAERKFGLLSECDH-PFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYF 260 (350)
Q Consensus 197 C~ICle~v~~k~~~~~~~fgil~~C~H-~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~ 260 (350)
|-+|-+. +.. ++|-.|+| ++|-.|=.. .+.||+|+.+..-
T Consensus 161 Cr~C~~~--------~~~-VlllPCrHl~lC~~C~~~---------------~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGER--------EAT-VLLLPCRHLCLCGICDES---------------LRICPICRSPKTS 201 (207)
T ss_pred ceecCcC--------Cce-EEeecccceEeccccccc---------------CccCCCCcChhhc
Confidence 8888885 233 44445998 578777433 2589999987653
No 159
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=35.88 E-value=18 Score=34.47 Aligned_cols=25 Identities=28% Similarity=0.733 Sum_probs=22.4
Q ss_pred CCccccccccccCCCCCCCCCCCCC
Q 018801 3 KRVLCKFFAHGACLKGEHCEFSHDW 27 (350)
Q Consensus 3 k~~~C~~f~~G~C~~G~~C~f~H~~ 27 (350)
+..+|+.|..+.|.+|..|.|.|-.
T Consensus 151 rea~C~~~e~~~C~rG~~CnFmH~k 175 (260)
T KOG2202|consen 151 REAICGQFERTECSRGGACNFMHVK 175 (260)
T ss_pred hhhhhcccccccCCCCCcCcchhhh
Confidence 4578999999999999999999964
No 160
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=33.90 E-value=27 Score=34.48 Aligned_cols=40 Identities=23% Similarity=0.555 Sum_probs=25.0
Q ss_pred cCcccc--ccccccccCCcccccceeecCCCCCcCcHHHHHHHh
Q 018801 193 QEIECS--VCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWR 234 (350)
Q Consensus 193 ~~~~C~--ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~ 234 (350)
..+.|+ -|---++-. |..++.---.+|+-+||.+|...+.
T Consensus 314 gGVlCP~pgCG~gll~E--PD~rkvtC~~gCgf~FCR~C~e~yh 355 (446)
T KOG0006|consen 314 GGVLCPRPGCGAGLLPE--PDQRKVTCEGGCGFAFCRECKEAYH 355 (446)
T ss_pred CCEecCCCCCCcccccC--CCCCcccCCCCchhHhHHHHHhhhc
Confidence 345553 244444433 3566655555699999999998543
No 161
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=31.71 E-value=23 Score=29.12 Aligned_cols=34 Identities=26% Similarity=0.607 Sum_probs=23.6
Q ss_pred CCcCcHHHHHHHhhhCCCCCCccccccccCCCCccc
Q 018801 222 DHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKL 257 (350)
Q Consensus 222 ~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~ 257 (350)
.=.||..||..+......+.+ ....-.||-||..
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~--~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVL--EDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHh--cCCceECCCCCCe
Confidence 778999999998876432221 1234689999984
No 162
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=31.50 E-value=45 Score=35.85 Aligned_cols=49 Identities=31% Similarity=0.705 Sum_probs=26.6
Q ss_pred ccccccccccCCCCCCCCCCCCCCCC---C------------CCCCCccCCCCCCCCCCCccCCCCCCCC
Q 018801 5 VLCKFFAHGACLKGEHCEFSHDWKDP---P------------NNICTYYQKGFCSYGSRCRYEHVKPSRS 59 (350)
Q Consensus 5 ~~C~~f~~G~C~~G~~C~f~H~~~~~---~------------~~~C~~f~~G~C~~G~~C~y~H~~~~~~ 59 (350)
..|+|-.+ |.. ..|.|+|..... + +.+|+|+ |+|+ ...|+|.|...-..
T Consensus 586 p~Ck~~~k--Cta-sDC~~sH~~~~~pvq~t~ip~~~~~~ti~~~CrY~--pnCr-nm~C~F~HPk~cRf 649 (681)
T KOG3702|consen 586 PGCKFGKK--CTA-SDCNYSHAGRRIPVQPTRIPPPFPGGTIRGLCRYR--PNCR-NMQCKFYHPKTCRF 649 (681)
T ss_pred cccccccc--ccc-ccCcccccCCCCCCccccCCCCCCCCCccccceec--cCcC-CccccccCCccccc
Confidence 34555443 555 677888864431 1 2345554 4455 35677777766443
No 163
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=30.52 E-value=29 Score=26.32 Aligned_cols=14 Identities=29% Similarity=1.042 Sum_probs=10.3
Q ss_pred cCcHHHHHHHhhhC
Q 018801 224 PFCISCIRNWRSSS 237 (350)
Q Consensus 224 ~FC~~CI~~W~~~~ 237 (350)
-||..|+-+|....
T Consensus 11 gFCRNCLskWy~~a 24 (68)
T PF06844_consen 11 GFCRNCLSKWYREA 24 (68)
T ss_dssp S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999864
No 164
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=29.58 E-value=52 Score=37.58 Aligned_cols=65 Identities=22% Similarity=0.358 Sum_probs=46.4
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCcccccC
Q 018801 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYT 270 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~w~~~ 270 (350)
....|-||-|.|--. .....|..=..|+-.-|..|-.-=|+.. ...||+|++.....-.|. +|+.
T Consensus 16 ~~qiCqICGD~vg~~--~~Ge~FVAC~eC~FPVCrpCYEYEr~eG----------~q~CPqCktrYkr~kgsp-rv~g 80 (1079)
T PLN02638 16 GGQVCQICGDNVGKT--VDGEPFVACDVCAFPVCRPCYEYERKDG----------NQSCPQCKTKYKRHKGSP-AILG 80 (1079)
T ss_pred CCceeeecccccCcC--CCCCEEEEeccCCCccccchhhhhhhcC----------CccCCccCCchhhhcCCC-CcCc
Confidence 445899999997654 3456788877899999999995433332 249999999988654443 3543
No 165
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=28.92 E-value=42 Score=38.13 Aligned_cols=66 Identities=24% Similarity=0.360 Sum_probs=47.1
Q ss_pred cCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCcccccCc
Q 018801 193 QEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (350)
Q Consensus 193 ~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~w~~~~ 271 (350)
....|.||-|.|--.. ....|..-..|+-.-|..|..-=++.. ..+||+|++.....-.|. ||..+
T Consensus 14 ~~~~c~iCGd~vg~~~--~Ge~FVAC~eC~fpvCr~cyeye~~~g----------~~~cp~c~t~y~~~~~~~-~~~~d 79 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKE--DGQPFVACHVCGFPVCKPCYEYERSEG----------NQCCPQCNTRYKRHKGCP-RVEGD 79 (1044)
T ss_pred CcchhhccccccCcCC--CCCEEEEeccCCCccccchhhhhhhcC----------CccCCccCCchhhhcCCC-CccCC
Confidence 3467999999976543 456788877899999999995333322 259999999988655443 45543
No 166
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.67 E-value=85 Score=34.93 Aligned_cols=42 Identities=29% Similarity=0.694 Sum_probs=29.7
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCcccc
Q 018801 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLS 258 (350)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~ 258 (350)
..|.+|--. ++-| ++.- .|+|.|+..|.. .+. ..||.|+...
T Consensus 841 skCs~C~~~-LdlP------~VhF-~CgHsyHqhC~e----~~~----------~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGT-LDLP------FVHF-LCGHSYHQHCLE----DKE----------DKCPKCLPEL 882 (933)
T ss_pred eeecccCCc-cccc------eeee-ecccHHHHHhhc----cCc----------ccCCccchhh
Confidence 478888765 5555 2333 599999999998 222 4899999843
No 167
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.19 E-value=30 Score=37.27 Aligned_cols=36 Identities=22% Similarity=0.617 Sum_probs=26.6
Q ss_pred ccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhh
Q 018801 195 IECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRS 235 (350)
Q Consensus 195 ~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~ 235 (350)
+-|.||+..++. ++.--+-..|+|+-|..|..+--.
T Consensus 12 l~c~ic~n~f~~-----~~~~Pvsl~cghtic~~c~~~lyn 47 (861)
T KOG3161|consen 12 LLCDICLNLFVV-----QRLEPVSLQCGHTICGHCVQLLYN 47 (861)
T ss_pred hhchHHHHHHHH-----HhcCcccccccchHHHHHHHhHhh
Confidence 569999776543 234445557999999999998764
No 168
>PLN02400 cellulose synthase
Probab=25.66 E-value=55 Score=37.42 Aligned_cols=77 Identities=19% Similarity=0.370 Sum_probs=50.9
Q ss_pred ccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecCcccccCc
Q 018801 192 SQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPSVIWYYTP 271 (350)
Q Consensus 192 s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps~~w~~~~ 271 (350)
.....|-||-|.|--. .....|..-..|+-.-|..|-.-=|+.. ..+||+|++.+...-.| -+|+.+
T Consensus 34 ~~gqiCqICGD~VG~t--~dGe~FVAC~eCaFPVCRpCYEYERkeG----------nq~CPQCkTrYkR~Kgs-prV~GD 100 (1085)
T PLN02400 34 LNGQICQICGDDVGVT--ETGDVFVACNECAFPVCRPCYEYERKDG----------TQCCPQCKTRYRRHKGS-PRVEGD 100 (1085)
T ss_pred cCCceeeecccccCcC--CCCCEEEEEccCCCccccchhheecccC----------CccCcccCCccccccCC-CCCCcc
Confidence 3456899999997654 3456888888899999999985333222 24999999999865333 234432
Q ss_pred ---hhHHHHHHHH
Q 018801 272 ---EEKQEIIDSY 281 (350)
Q Consensus 272 ---~ek~~li~~y 281 (350)
++-++|-+++
T Consensus 101 eeedd~DDlenEf 113 (1085)
T PLN02400 101 EDEDDVDDLENEF 113 (1085)
T ss_pred cccccchhhhhhh
Confidence 2334444444
No 169
>PF14353 CpXC: CpXC protein
Probab=25.24 E-value=49 Score=27.66 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=21.6
Q ss_pred ccCCCCccccceeecCcccccC-chhHHHHHH
Q 018801 249 RACPICRKLSYFVIPSVIWYYT-PEEKQEIID 279 (350)
Q Consensus 249 ~~CP~CR~~~~~v~ps~~w~~~-~~ek~~li~ 279 (350)
.+||.|...+.+-+...+-+.. .+-|++|++
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~ 33 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILD 33 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHc
Confidence 3899999999987776554432 445666663
No 170
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.74 E-value=79 Score=24.93 Aligned_cols=16 Identities=19% Similarity=0.567 Sum_probs=10.2
Q ss_pred ccccCchhHHHHHHHHH
Q 018801 266 IWYYTPEEKQEIIDSYK 282 (350)
Q Consensus 266 ~w~~~~~ek~~li~~yk 282 (350)
+|+.. .|-++||+.-+
T Consensus 30 VWLDr-GELdKli~r~r 45 (88)
T COG3809 30 VWLDR-GELDKLIERSR 45 (88)
T ss_pred Eeecc-hhHHHHHHHhc
Confidence 48754 46677887543
No 171
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=22.59 E-value=11 Score=27.08 Aligned_cols=20 Identities=25% Similarity=0.773 Sum_probs=15.6
Q ss_pred eecCCCCCcCcHHHHHHHhh
Q 018801 216 GLLSECDHPFCISCIRNWRS 235 (350)
Q Consensus 216 gil~~C~H~FC~~CI~~W~~ 235 (350)
+.=+.|++.||..|-..|..
T Consensus 41 ~~C~~C~~~fC~~C~~~~H~ 60 (64)
T PF01485_consen 41 VTCPSCGTEFCFKCGEPWHE 60 (64)
T ss_dssp CCTTSCCSEECSSSTSESCT
T ss_pred eECCCCCCcCccccCcccCC
Confidence 34445999999999998853
No 172
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=21.27 E-value=31 Score=36.37 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=46.7
Q ss_pred HHHhhcccCccccccccccccCCcccccceeecCCCCCcCcHHHHHHHhhhCCCCCCccccccccCCCCccccceeecC
Q 018801 186 LEALRRSQEIECSVCLDRVLSKPTAAERKFGLLSECDHPFCISCIRNWRSSSPTSGMDVNTALRACPICRKLSYFVIPS 264 (350)
Q Consensus 186 ~~~~~~s~~~~C~ICle~v~~k~~~~~~~fgil~~C~H~FC~~CI~~W~~~~~~~~~~~~~~~~~CP~CR~~~~~v~ps 264 (350)
.+..+......|++|+.. ++.. +.+ +++.+|+|-++..|+..|..... .|+.+++.+.++.-.
T Consensus 252 ~~~deq~~~~~~~~~~~~-~~~~---eqk-~l~~~~~~~~g~tsl~~e~~~~~-----------v~~~~~tk~~~~~~e 314 (553)
T KOG4430|consen 252 RELDEQENKNACGLCLSE-ADAK---EQK-GLEGNNQRQTGATSLMEEEAVES-----------VCPLRVTKVRTISKE 314 (553)
T ss_pred hhhhhhhcccchhhchhh-HhHH---Hhh-hhhhcccchhhhhhhhhhhhhhh-----------hhhcccccccccccc
Confidence 333335566789999986 3332 222 89999999999999999997643 799999998876543
Done!