Query 018802
Match_columns 350
No_of_seqs 153 out of 420
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 06:17:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018802.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018802hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 2E-29 6.8E-34 192.4 6.6 61 141-202 2-62 (64)
2 2yum_A ZZZ3 protein, zinc fing 97.2 0.0006 2E-08 50.9 6.0 55 144-201 6-63 (75)
3 2yus_A SWI/SNF-related matrix- 97.1 0.00097 3.3E-08 51.6 6.2 50 143-198 15-64 (79)
4 2cu7_A KIAA1915 protein; nucle 97.0 0.0015 5.1E-08 48.7 6.2 53 143-201 6-58 (72)
5 1x41_A Transcriptional adaptor 96.4 0.008 2.7E-07 43.4 6.3 51 143-198 5-55 (60)
6 2xag_B REST corepressor 1; ami 96.3 0.0044 1.5E-07 62.1 6.0 52 144-201 378-429 (482)
7 2iw5_B Protein corest, REST co 96.2 0.0068 2.3E-07 56.2 6.4 54 142-201 129-182 (235)
8 2cqq_A RSGI RUH-037, DNAJ homo 96.2 0.01 3.5E-07 45.3 6.5 53 145-200 7-59 (72)
9 2elk_A SPCC24B10.08C protein; 95.9 0.023 8E-07 40.9 6.6 49 146-198 9-57 (58)
10 1ity_A TRF1; helix-turn-helix, 95.2 0.068 2.3E-06 39.3 7.0 55 141-198 5-59 (69)
11 2d9a_A B-MYB, MYB-related prot 94.8 0.087 3E-06 37.5 6.4 50 143-197 5-54 (60)
12 1guu_A C-MYB, MYB proto-oncoge 94.6 0.079 2.7E-06 36.7 5.7 47 146-197 3-49 (52)
13 2din_A Cell division cycle 5-l 94.4 0.11 3.6E-06 37.8 6.4 48 145-199 8-55 (66)
14 1gvd_A MYB proto-oncogene prot 94.4 0.097 3.3E-06 36.3 5.8 47 146-197 3-49 (52)
15 3sjm_A Telomeric repeat-bindin 94.4 0.11 3.7E-06 38.5 6.3 48 143-193 8-55 (64)
16 2eqr_A N-COR1, N-COR, nuclear 94.1 0.12 4.2E-06 37.5 6.0 45 142-192 8-52 (61)
17 1w0t_A Telomeric repeat bindin 93.5 0.23 7.9E-06 34.7 6.5 48 146-196 2-49 (53)
18 2cqr_A RSGI RUH-043, DNAJ homo 93.1 0.12 4.2E-06 39.5 4.8 52 145-198 17-68 (73)
19 2hzd_A Transcriptional enhance 93.0 0.11 3.8E-06 41.5 4.6 56 144-202 4-77 (82)
20 2dim_A Cell division cycle 5-l 92.8 0.33 1.1E-05 35.6 6.7 50 143-197 6-55 (70)
21 2yqk_A Arginine-glutamic acid 92.0 0.44 1.5E-05 35.0 6.4 54 143-205 6-60 (63)
22 2ltp_A Nuclear receptor corepr 91.0 0.032 1.1E-06 43.5 0.0 53 145-203 15-67 (89)
23 2llk_A Cyclin-D-binding MYB-li 91.1 0.56 1.9E-05 36.0 6.3 45 143-194 20-64 (73)
24 1wgx_A KIAA1903 protein; MYB D 90.8 0.66 2.3E-05 36.0 6.6 49 148-198 10-58 (73)
25 2cjj_A Radialis; plant develop 90.7 0.4 1.4E-05 38.3 5.4 52 146-199 8-59 (93)
26 2aje_A Telomere repeat-binding 90.3 0.89 3.1E-05 37.1 7.3 54 141-200 8-63 (105)
27 1gv2_A C-MYB, MYB proto-oncoge 89.2 0.78 2.7E-05 35.4 5.9 46 146-196 4-49 (105)
28 1gv2_A C-MYB, MYB proto-oncoge 88.6 1 3.5E-05 34.7 6.2 46 145-196 55-100 (105)
29 2k9n_A MYB24; R2R3 domain, DNA 88.6 0.83 2.8E-05 35.8 5.7 49 145-199 52-100 (107)
30 3osg_A MYB21; transcription-DN 87.8 1.1 3.8E-05 36.1 6.1 49 143-197 8-56 (126)
31 4eef_G F-HB80.4, designed hema 86.4 0.34 1.2E-05 38.2 2.3 48 146-195 20-67 (74)
32 2crg_A Metastasis associated p 86.0 1.8 6.2E-05 32.4 6.0 55 142-204 4-58 (70)
33 2k9n_A MYB24; R2R3 domain, DNA 85.8 1.6 5.5E-05 34.1 5.9 45 147-196 2-46 (107)
34 2roh_A RTBP1, telomere binding 85.4 2 6.9E-05 36.0 6.6 54 141-200 26-81 (122)
35 1h8a_C AMV V-MYB, MYB transfor 85.3 1.8 6.2E-05 34.6 6.1 46 145-196 78-123 (128)
36 3osg_A MYB21; transcription-DN 84.0 2.2 7.7E-05 34.3 6.1 48 146-199 62-109 (126)
37 1h8a_C AMV V-MYB, MYB transfor 84.0 2.4 8.4E-05 33.9 6.3 48 145-197 26-73 (128)
38 1x58_A Hypothetical protein 49 84.0 3.4 0.00012 31.4 6.7 53 142-201 4-57 (62)
39 1h89_C C-MYB, MYB proto-oncoge 83.1 2.5 8.7E-05 34.9 6.3 46 145-196 109-154 (159)
40 2juh_A Telomere binding protei 82.5 2.1 7.1E-05 35.9 5.5 54 140-196 11-66 (121)
41 3zqc_A MYB3; transcription-DNA 82.1 3.8 0.00013 33.1 6.8 49 146-200 54-102 (131)
42 2ckx_A NGTRF1, telomere bindin 80.5 3.4 0.00012 32.2 5.7 46 148-196 2-49 (83)
43 1h89_C C-MYB, MYB proto-oncoge 77.1 5.4 0.00018 32.9 6.3 48 145-197 57-104 (159)
44 3zqc_A MYB3; transcription-DNA 75.3 3.6 0.00012 33.2 4.7 47 146-197 2-48 (131)
45 4a69_C Nuclear receptor corepr 72.1 6.1 0.00021 31.2 5.2 41 144-190 41-81 (94)
46 2lm1_A Lysine-specific demethy 59.6 5.5 0.00019 31.2 2.7 44 152-196 45-94 (107)
47 2li6_A SWI/SNF chromatin-remod 58.2 2.7 9.3E-05 33.8 0.7 44 152-198 50-97 (116)
48 2cxy_A BAF250B subunit, HBAF25 57.1 6.1 0.00021 32.1 2.6 44 152-196 52-101 (125)
49 2eqy_A RBP2 like, jumonji, at 54.9 12 0.0004 30.5 3.9 45 152-197 43-93 (122)
50 2jxj_A Histone demethylase jar 54.5 8.4 0.00029 29.6 2.9 44 152-196 37-86 (96)
51 2jrz_A Histone demethylase jar 50.1 12 0.00042 30.1 3.3 44 152-196 41-90 (117)
52 1c20_A DEAD ringer protein; DN 47.7 14 0.00048 30.0 3.3 45 152-197 53-104 (128)
53 1ig6_A MRF-2, modulator recogn 42.6 7.3 0.00025 30.6 0.9 46 151-197 33-85 (107)
54 2kk0_A AT-rich interactive dom 42.5 18 0.00061 30.2 3.3 46 152-198 65-117 (145)
55 1ign_A Protein (RAP1); RAP1,ye 37.4 32 0.0011 32.1 4.4 52 145-199 7-61 (246)
56 1qgp_A Protein (double strande 35.3 46 0.0016 24.7 4.2 45 150-197 12-56 (77)
57 4b4c_A Chromodomain-helicase-D 34.3 51 0.0017 27.9 4.8 56 143-199 4-59 (211)
58 1kkx_A Transcription regulator 31.8 20 0.00067 29.4 1.8 44 152-198 49-96 (123)
59 3b73_A PHIH1 repressor-like pr 27.5 91 0.0031 25.0 5.0 50 146-199 7-56 (111)
60 2ebi_A DNA binding protein GT- 24.1 69 0.0024 23.8 3.5 59 143-201 1-71 (86)
61 2rq5_A Protein jumonji; develo 23.0 90 0.0031 25.6 4.3 46 152-198 43-95 (121)
62 2p7v_B Sigma-70, RNA polymeras 22.6 1.5E+02 0.0052 20.3 4.9 34 164-200 20-53 (68)
63 1tc3_C Protein (TC3 transposas 22.3 1.4E+02 0.0046 17.9 4.9 41 150-198 7-47 (51)
64 3tav_A Methionine aminopeptida 20.9 1.2E+02 0.0042 26.8 5.0 59 136-199 20-80 (286)
65 1ofc_X ISWI protein; nuclear p 20.7 1.1E+02 0.0037 29.0 4.8 48 148-200 112-159 (304)
66 2iai_A Putative transcriptiona 20.0 1.6E+02 0.0056 23.5 5.2 29 152-181 34-62 (230)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.96 E-value=2e-29 Score=192.41 Aligned_cols=61 Identities=48% Similarity=0.762 Sum_probs=57.8
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhccccc
Q 018802 141 SVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKST 202 (350)
Q Consensus 141 s~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k~~ 202 (350)
+.+|+|++||+|||++||+||++|| .++|+||+||++|+|+|||++||||||||||++.++
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999 799999999999999999999999999999998654
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=0.0006 Score=50.87 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=45.5
Q ss_pred CCccccChHHHHHHHHHHHHhCCCCC---CChHHHHhhcCCCCCCHHHHHHHhhhhhcccc
Q 018802 144 APRMRWTTTLHAHFVHAVQLLGGHER---ATPKSVLELMNVKDLTLAHVKSHLQMYRTVKS 201 (350)
Q Consensus 144 KpRlrWT~ELH~rFVeAVeqLGG~dk---AtPKkILelMnV~GLTr~hVKSHLQKYRl~k~ 201 (350)
..+-.||+|.+++|+++|+.+|. +. -.++.|.+.|+ |=|..||+.|.|+|.....
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~-~~~~~~~W~~IA~~~~--~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPP-EEVESRRWQKIADELG--NRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCC-CSCHHHHHHHHHHHHS--SSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHhC--CCCHHHHHHHHHHHHHHHH
Confidence 34568999999999999999992 22 45999999985 5599999999999987653
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.09 E-value=0.00097 Score=51.58 Aligned_cols=50 Identities=14% Similarity=0.123 Sum_probs=43.1
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhc
Q 018802 143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 198 (350)
Q Consensus 143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl 198 (350)
...+-.||+|.+++|++||+.+| -.+++|.++|+- =|..||+.|-++|-+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~~--RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYK----DDWNKVSEHVGS--RTQDECILHFLRLPI 64 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHSS--CCHHHHHHHHTTSCC
T ss_pred cccCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcCC--CCHHHHHHHHHHhcc
Confidence 34567899999999999999999 359999999875 599999999998843
No 4
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.99 E-value=0.0015 Score=48.70 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=45.1
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcccc
Q 018802 143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKS 201 (350)
Q Consensus 143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k~ 201 (350)
...+-.||+|.++.|+++|+++|- .++.|.+.|. |=|..+|+.|.++|...+.
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~--~Rt~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGR----RWTKISKLIG--SRTVLQVKSYARQYFKNKV 58 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHS--SSCHHHHHHHHHHHHHHHS
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcC--CCCHHHHHHHHHHHHHHHH
Confidence 345678999999999999999992 7999999874 5699999999999976553
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.41 E-value=0.008 Score=43.42 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=43.0
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhc
Q 018802 143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 198 (350)
Q Consensus 143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl 198 (350)
...|-.||+|..+++++||+++|- ..++.|.+.|+ +=|..|++.|-++|-.
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~--~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGF---GNWQDVANQMC--TKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCT---TCHHHHHHHHT--TSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCc---CcHHHHHHHhC--CCCHHHHHHHHHHHcc
Confidence 345668999999999999999991 25999999995 5699999999988864
No 6
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.32 E-value=0.0044 Score=62.06 Aligned_cols=52 Identities=23% Similarity=0.350 Sum_probs=46.6
Q ss_pred CCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcccc
Q 018802 144 APRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKS 201 (350)
Q Consensus 144 KpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k~ 201 (350)
+..-+||+|.|..|++||.++|. -++.|-++++.. |..||++|-++||....
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgTK--T~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNK--SVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSSC--CHHHHHHHHHHTTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCCC--CHHHHHHHHHHHHHHhC
Confidence 45689999999999999999993 599999999887 99999999999998654
No 7
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=96.25 E-value=0.0068 Score=56.24 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=46.1
Q ss_pred CCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcccc
Q 018802 142 VRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKS 201 (350)
Q Consensus 142 ~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k~ 201 (350)
..+..-+||+|.+..|++|+..+|. .+..|-++++- =|..+|+.|.++||....
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~VgT--KT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHHHSS--CCHHHHHHHHHHTTTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcCC--CCHHHHHHHHHHHHHHhh
Confidence 3466789999999999999999992 39999999665 499999999999996543
No 8
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.25 E-value=0.01 Score=45.34 Aligned_cols=53 Identities=8% Similarity=0.136 Sum_probs=43.3
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhccc
Q 018802 145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK 200 (350)
Q Consensus 145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k 200 (350)
.+-.||.|-+++|++|+..+++-..-.+.+|.+.|| =|..+|+.|-+++....
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg---Rt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG---RSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT---SCHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC---CCHHHHHHHHHHHHHhc
Confidence 344799999999999999998533455889999984 69999999988876543
No 9
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=95.88 E-value=0.023 Score=40.89 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=41.2
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhc
Q 018802 146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 198 (350)
Q Consensus 146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl 198 (350)
+-.||+|..+++++||+++|- ..++.|.+.|+. +=|..|++.|-++|.+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGL---GNWADIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 446999999999999999992 359999999972 3499999999988864
No 10
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=95.15 E-value=0.068 Score=39.28 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=45.7
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhc
Q 018802 141 SVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 198 (350)
Q Consensus 141 s~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl 198 (350)
..++.|-.||+|.-+..+++|+++|. -.++.|.+.|...|=|-.+++-+-..|-.
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHcC
Confidence 35778899999999999999999992 25999999997557799999987666643
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=94.76 E-value=0.087 Score=37.53 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=41.9
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 018802 143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 197 (350)
Q Consensus 143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYR 197 (350)
...|-.||+|..++++++|+++|- -.++.|.+.|. |=|..+++-|-++|-
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~--~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHFP--NRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHCS--SSCHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcc--CCCHHHHHHHHHHHc
Confidence 456778999999999999999992 35999999974 569999998877764
No 12
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=94.60 E-value=0.079 Score=36.68 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=39.9
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 018802 146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 197 (350)
Q Consensus 146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYR 197 (350)
+-.||+|..++++++|+++|. ..++.|.+.|. |=|..+++-|-++|-
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~--~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYLP--NRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTST--TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHcC--CCCHHHHHHHHHHHc
Confidence 568999999999999999993 36999999974 569999998877663
No 13
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.43 E-value=0.11 Score=37.82 Aligned_cols=48 Identities=13% Similarity=0.295 Sum_probs=41.2
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcc
Q 018802 145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTV 199 (350)
Q Consensus 145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~ 199 (350)
.+-.||+|..++++++|+++|. .+..|.+++| =|-.+|+-|-+.|-..
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~g---Rt~~qcr~Rw~~~l~~ 55 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT----QWRTIAPIIG---RTAAQCLEHYEFLLDK 55 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHHS---SCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC----CHHHHhcccC---cCHHHHHHHHHHHhCh
Confidence 4567999999999999999982 6999999765 5999999999988653
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=94.41 E-value=0.097 Score=36.32 Aligned_cols=47 Identities=11% Similarity=0.115 Sum_probs=39.6
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 018802 146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 197 (350)
Q Consensus 146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYR 197 (350)
+-.||+|..++++++|+++|. ..+..|.+.|. |=|..+++-|-++|-
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~~--~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHLK--GRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTST--TCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHcC--CCCHHHHHHHHHHHc
Confidence 457999999999999999992 35899999984 569999998877763
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=94.35 E-value=0.11 Score=38.49 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=39.1
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHh
Q 018802 143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHL 193 (350)
Q Consensus 143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHL 193 (350)
.+.|-.||+|.-++++++|+++|- -.++.|.+.+.+.|=|-.|++-.-
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw 55 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRW 55 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHH
Confidence 345678999999999999999992 249999999888788999987543
No 16
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.08 E-value=0.12 Score=37.54 Aligned_cols=45 Identities=9% Similarity=-0.026 Sum_probs=37.2
Q ss_pred CCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHH
Q 018802 142 VRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSH 192 (350)
Q Consensus 142 ~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSH 192 (350)
.++..-.||+|.|+.|++|+.++|. ...+|.++|. +-|..+|.-|
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l~--~rt~~~~v~~ 52 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASYLE--RKSVPDCVLY 52 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHCT--TSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHH
Confidence 4567789999999999999999982 4899988764 6698888755
No 17
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=93.54 E-value=0.23 Score=34.70 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=39.7
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802 146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY 196 (350)
Q Consensus 146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY 196 (350)
|-.||+|..+..+++|+.+|. ..++.|.+.|+..|=|-.+++-+-..|
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 568999999999999999992 259999999975567899998765544
No 18
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=93.12 E-value=0.12 Score=39.54 Aligned_cols=52 Identities=8% Similarity=0.066 Sum_probs=40.9
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhc
Q 018802 145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 198 (350)
Q Consensus 145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl 198 (350)
.+-.||.|....|++||..+|....-.+.+|.++| +|=|..+|+.|-+.+..
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v--pGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 44569999999999999999831123477787777 47799999999887754
No 19
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=93.02 E-value=0.11 Score=41.47 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=38.2
Q ss_pred CCccccChHHHHHHHHHHHHhCCCCCCChHHHHh------------------hcCCCCCCHHHHHHHhhhhhccccc
Q 018802 144 APRMRWTTTLHAHFVHAVQLLGGHERATPKSVLE------------------LMNVKDLTLAHVKSHLQMYRTVKST 202 (350)
Q Consensus 144 KpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILe------------------lMnV~GLTr~hVKSHLQKYRl~k~~ 202 (350)
+..-+|.++|-+.|++|+..+==.... |.||. .-| .-=|+.||.||||.-|..+.+
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~--k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRR--KIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCC--CCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHHHTT
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCcc--ceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHHHhh
Confidence 456789999999999999987411112 22231 111 234899999999998876654
No 20
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.85 E-value=0.33 Score=35.58 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=42.2
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 018802 143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 197 (350)
Q Consensus 143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYR 197 (350)
...|-.||+|..++++++|+++|- ..++.|.+.|+ +=|..+++-|-+.|-
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEWL 55 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHHc
Confidence 446778999999999999999992 35999999987 569999998877764
No 21
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.01 E-value=0.44 Score=35.03 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=38.5
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHh-hcCCCCCCHHHHHHHhhhhhcccccCCC
Q 018802 143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLE-LMNVKDLTLAHVKSHLQMYRTVKSTDKG 205 (350)
Q Consensus 143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILe-lMnV~GLTr~hVKSHLQKYRl~k~~~~~ 205 (350)
+..+-.||+|.|..|.+|+.+.|- -...|.+ ++ +.-|..+|. |-|-..++++.+
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~v--~~Kt~~~~v---~fYY~wKkt~~~ 60 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGK----NFFRIRKELL--PNKETGELI---TFYYYWKKTSGP 60 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCS----CHHHHHHHSC--TTSCHHHHH---HHHHHHHCSSCC
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCc----cHHHHHHHHc--CCCcHHHHH---HHHhcccCCCCC
Confidence 345678999999999999999992 3678876 44 445888875 445555555443
No 22
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=91.03 E-value=0.032 Score=43.51 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=43.2
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcccccC
Q 018802 145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTD 203 (350)
Q Consensus 145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k~~~ 203 (350)
.+-.||+|.++.|+++|+.+|- .+..|.+.| +|=|..+|+.|.+.|......+
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l--~gRt~~q~k~r~~~~lrk~~l~ 67 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR----NWSAIARMV--GSKTVSQCKNFYFNYKKRQNLD 67 (89)
Confidence 4567999999999999999992 489999886 4669999999988876654433
No 23
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=91.06 E-value=0.56 Score=35.95 Aligned_cols=45 Identities=11% Similarity=0.031 Sum_probs=38.3
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhh
Q 018802 143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQ 194 (350)
Q Consensus 143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQ 194 (350)
...+-.||+|.-+.++++|+++| ..++.|.+.| |=|-.+||.+..
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G----~kW~~IA~~l---gRt~~q~knRw~ 64 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHG----NDWATIGAAL---GRSASSVKDRCR 64 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHS----SCHHHHHHHH---TSCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHC----CCHHHHHHHh---CCCHHHHHHHHH
Confidence 33566899999999999999999 2399999999 669999998754
No 24
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=90.84 E-value=0.66 Score=35.96 Aligned_cols=49 Identities=10% Similarity=0.058 Sum_probs=37.7
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhc
Q 018802 148 RWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 198 (350)
Q Consensus 148 rWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl 198 (350)
.||.+-..+|.+|+..++-..--.+.+|.+.++ |=|.++|+.|-+....
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~--gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG--SRSPEECQRKYMENPR 58 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT--TSCHHHHHHHHHHSSS
T ss_pred CCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC--CCCHHHHHHHHHHHHh
Confidence 599999999999999997322234677887765 5699999988766543
No 25
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=90.73 E-value=0.4 Score=38.26 Aligned_cols=52 Identities=15% Similarity=0.189 Sum_probs=42.0
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcc
Q 018802 146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTV 199 (350)
Q Consensus 146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~ 199 (350)
.-.||.|....|++|+..+|-...-.+.+|.+.|. |=|..+|+.|-+++...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp--GRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVE--GRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST--TCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 34699999999999999998322245889999884 67999999999887643
No 26
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=90.29 E-value=0.89 Score=37.15 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=43.4
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcC--CCCCCHHHHHHHhhhhhccc
Q 018802 141 SVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMN--VKDLTLAHVKSHLQMYRTVK 200 (350)
Q Consensus 141 s~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMn--V~GLTr~hVKSHLQKYRl~k 200 (350)
..++.|-.||+|.-+..+++|+.+|. -.++.|++.+. .++=|..++|-+ ||...
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~f~~RT~v~lKdr---Wrnll 63 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT---GRWRDVKLCAFEDADHRTYVDLKDK---WKTLV 63 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS---SSHHHHHSSSSSSTTCCCHHHHHHH---HHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC---CChHHHHHHhccccCCCCHHHHHHH---HHHHH
Confidence 45789999999999999999999993 25999999763 378899999964 55444
No 27
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=89.19 E-value=0.78 Score=35.43 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=39.0
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802 146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY 196 (350)
Q Consensus 146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY 196 (350)
+-.||+|..++++++|+.+|. ..++.|.+.| +|=|..+++.|-++|
T Consensus 4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNH 49 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhh--cCCCHHHHHHHHHhc
Confidence 457999999999999999994 3489999998 466999999877666
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=88.61 E-value=1 Score=34.73 Aligned_cols=46 Identities=20% Similarity=0.245 Sum_probs=38.9
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802 145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY 196 (350)
Q Consensus 145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY 196 (350)
.+-.||+|..+.++++|.++|. .+..|.+.| +|=|..+|+.|-..+
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS----CHHHHHTTC--TTCCHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 3568999999999999999993 589999876 677999999986644
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=88.60 E-value=0.83 Score=35.76 Aligned_cols=49 Identities=8% Similarity=0.121 Sum_probs=41.2
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcc
Q 018802 145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTV 199 (350)
Q Consensus 145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~ 199 (350)
.+-.||+|....++++|.++|. .+..|.+.| +|=|..+|+.|-..+...
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHHhh
Confidence 3568999999999999999993 599999987 577999999987766543
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=87.83 E-value=1.1 Score=36.09 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=41.0
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 018802 143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 197 (350)
Q Consensus 143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYR 197 (350)
...|..||+|.-++++++|+++|. .++.|.+.|. |=|..+++.+-+.|-
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~--~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFP--NRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCT--TCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHhhhc
Confidence 456778999999999999999993 6999999885 458899988777664
No 31
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=86.36 E-value=0.34 Score=38.18 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=36.3
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhh
Q 018802 146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQM 195 (350)
Q Consensus 146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQK 195 (350)
--.||.+-...|..|+..+..-..-.+.+|.+.++ |-|.++|+.|-|-
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp--GKT~eEVk~hY~~ 67 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK--GRTPEEVKKHYEL 67 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC--SSCHHHHHGGGC-
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC--CCCHHHHHHHHHH
Confidence 34699999999999999997433345677777664 7799999999763
No 32
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=86.04 E-value=1.8 Score=32.45 Aligned_cols=55 Identities=15% Similarity=0.162 Sum_probs=39.2
Q ss_pred CCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcccccCC
Q 018802 142 VRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDK 204 (350)
Q Consensus 142 ~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k~~~~ 204 (350)
.++..-.||+|.|..|.+|+...|- -...|.+.| |+.-|..+|..+- -..++++.
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~-v~~Kt~~~~v~fY---Y~wKkt~~ 58 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGK----DFNDIRQDF-LPWKSLTSIIEYY---YMWKTTDR 58 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCS----CHHHHHHTT-CSSSCHHHHHHHH---HHHHTCCS
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCc----cHHHHHHHH-cCCCCHHHHHHHH---HhhcCCch
Confidence 4567779999999999999999992 267787621 4555888877554 34555544
No 33
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=85.76 E-value=1.6 Score=34.10 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=37.3
Q ss_pred cccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802 147 MRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY 196 (350)
Q Consensus 147 lrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY 196 (350)
..||+|..++++++|+.+|. ..++.|.+.|+ |=|..+++-+-..|
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~--~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLMI--TRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTT--TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcC--CCCHHHHHHHHHHH
Confidence 57999999999999999993 35999999986 55888888765554
No 34
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=85.43 E-value=2 Score=35.98 Aligned_cols=54 Identities=26% Similarity=0.242 Sum_probs=43.2
Q ss_pred CCCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhc--CCCCCCHHHHHHHhhhhhccc
Q 018802 141 SVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELM--NVKDLTLAHVKSHLQMYRTVK 200 (350)
Q Consensus 141 s~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelM--nV~GLTr~hVKSHLQKYRl~k 200 (350)
..++.|-.||+|.-+..+++|+++|. -.++.|++.+ ..++=|..++|- |||...
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~~~~RT~vdlKd---RWrnll 81 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGT---GRWRDVKFRAFENVHHRTYVDLKD---KWKTLV 81 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSS---SCHHHHHHHHHSSSCCCCHHHHHH---HHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC---CChHHHHHHhccccCCCCHHHHHH---HHHHHH
Confidence 45788999999999999999999992 2599999975 347789999995 455443
No 35
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=85.30 E-value=1.8 Score=34.65 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=38.9
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802 145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY 196 (350)
Q Consensus 145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY 196 (350)
.+-.||+|..+.++++|.++| ..+..|.+.| +|=|..+|+.|-..+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G----~~W~~Ia~~l--~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLG----NRWAEIAKLL--PGRTDNAVKNHWNST 123 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC----SCHHHHGGGS--TTCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHC----cCHHHHHHHC--CCCCHHHHHHHHHHH
Confidence 356799999999999999999 3599999986 577999999886544
No 36
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=84.03 E-value=2.2 Score=34.27 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=40.1
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcc
Q 018802 146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTV 199 (350)
Q Consensus 146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~ 199 (350)
+-.||+|..++++++|.++|. .+..|.+.| +|=|..+|+.|-..+...
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGR----QWAIIAKFF--PGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS----CHHHHHTTS--TTCCHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHh
Confidence 457999999999999999993 599999976 577999999987666543
No 37
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=84.02 E-value=2.4 Score=33.87 Aligned_cols=48 Identities=10% Similarity=0.105 Sum_probs=39.7
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 018802 145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 197 (350)
Q Consensus 145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYR 197 (350)
.+-.||+|..++++++|+.+|. -.++.|.+.|+ |=|..+++-|-++|-
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGP---KRWSDIAKHLK--GRIGKQCRERWHNHL 73 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCS---CCHHHHHHHSS--SCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhc--CCcHHHHHHHHHHhc
Confidence 4567999999999999999993 24999999985 669999998776654
No 38
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=83.95 E-value=3.4 Score=31.42 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=41.2
Q ss_pred CCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcC-CCCCCHHHHHHHhhhhhcccc
Q 018802 142 VRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMN-VKDLTLAHVKSHLQMYRTVKS 201 (350)
Q Consensus 142 ~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMn-V~GLTr~hVKSHLQKYRl~k~ 201 (350)
..+.|-.||+|.-...++.|+++| ..++.|+.--. .++=|.-.||. |||...+
T Consensus 4 ~~~~r~~WT~EE~~~L~~gV~k~G----~~W~~I~~~y~f~~~RT~VdLKd---k~r~L~k 57 (62)
T 1x58_A 4 GSSGRKDFTKEEVNYLFHGVKTMG----NHWNSILWSFPFQKGRRAVDLAH---KYHRLIS 57 (62)
T ss_dssp CCCCSSSCCHHHHHHHHHHHHHHC----SCHHHHHHHSCCCTTCCHHHHHH---HHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHh----HhHHHHHHhCCCccCcccchHHH---HHHHHHh
Confidence 345788999999999999999999 26999996322 35668888885 7776543
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=83.14 E-value=2.5 Score=34.87 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=39.4
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhh
Q 018802 145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMY 196 (350)
Q Consensus 145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKY 196 (350)
.+-.||+|..+.++++|.++| ..+..|.+.| +|=|..+|+.|-..+
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g----~~W~~Ia~~l--~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLG----NRWAEIAKLL--PGRTDNAIKNHWNST 154 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC----SCHHHHHTTS--TTCCHHHHHHHHHTT
T ss_pred cccCCChHHHHHHHHHHHHHC----CCHHHHHHHC--CCCCHHHHHHHHHHH
Confidence 456899999999999999999 3599999976 677999999986654
No 40
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=82.49 E-value=2.1 Score=35.86 Aligned_cols=54 Identities=20% Similarity=0.144 Sum_probs=43.6
Q ss_pred cCCCCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcC--CCCCCHHHHHHHhhhh
Q 018802 140 RSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMN--VKDLTLAHVKSHLQMY 196 (350)
Q Consensus 140 ~s~kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMn--V~GLTr~hVKSHLQKY 196 (350)
...++.|-.||+|.-+..+++|+++|. -.++.|++.+. .+|=|-.++|-+...+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~RT~v~lKdRWrnl 66 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTL 66 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSSCCSHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 345788999999999999999999992 25999999875 3778999998654433
No 41
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=82.12 E-value=3.8 Score=33.07 Aligned_cols=49 Identities=14% Similarity=0.173 Sum_probs=40.5
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhccc
Q 018802 146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK 200 (350)
Q Consensus 146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k 200 (350)
+-.||+|..+.++++|.++|. .+..|.+.|. |=|..+|+.|-..|....
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l~--gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS----KWSVIAKLIP--GRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS----CHHHHTTTST--TCCHHHHHHHHHHTTGGG
T ss_pred CCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcC--CCCHHHHHHHHHHHHHHH
Confidence 347999999999999999994 4899998774 669999999877665443
No 42
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=80.50 E-value=3.4 Score=32.23 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=37.0
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChHHHHhhcC--CCCCCHHHHHHHhhhh
Q 018802 148 RWTTTLHAHFVHAVQLLGGHERATPKSVLELMN--VKDLTLAHVKSHLQMY 196 (350)
Q Consensus 148 rWT~ELH~rFVeAVeqLGG~dkAtPKkILelMn--V~GLTr~hVKSHLQKY 196 (350)
.||+|..+..+++|+++|. -.++.|++... ++|=|-.++|-+-..+
T Consensus 2 ~WT~eEd~~L~~gv~k~G~---g~W~~I~~~~~~~~~~RT~~~lKdrWrnl 49 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTL 49 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCS---SCHHHHHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCC---CCcHHHHHhhccccCCCCHHHHHHHHHHH
Confidence 5999999999999999993 25999998633 4677999999754444
No 43
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=77.07 E-value=5.4 Score=32.90 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=39.9
Q ss_pred CccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 018802 145 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 197 (350)
Q Consensus 145 pRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYR 197 (350)
.+-.||+|..++++++|+.+|. -.++.|.+.| +|=|..+++.+-+.|-
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTS--TTCCHHHHHHHHHHTT
T ss_pred CCCCCChHHHHHHHHHHHHhCc---ccHHHHHHHc--CCCCHHHHHHHHHHHh
Confidence 4568999999999999999993 2489999988 4669999998776653
No 44
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=75.31 E-value=3.6 Score=33.21 Aligned_cols=47 Identities=6% Similarity=-0.026 Sum_probs=38.3
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 018802 146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 197 (350)
Q Consensus 146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYR 197 (350)
+-.||+|.-++.+++|+.+|. -.++.|.+.| +|=|..+++-+-+.|-
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGP---QNWPRITSFL--PNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCS---CCGGGGTTSC--TTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCc---CCHHHHHHHH--CCCCHHHHHHHHhhcc
Confidence 347999999999999999993 2488998888 4568999988776664
No 45
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=72.09 E-value=6.1 Score=31.17 Aligned_cols=41 Identities=10% Similarity=0.051 Sum_probs=31.3
Q ss_pred CCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHH
Q 018802 144 APRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVK 190 (350)
Q Consensus 144 KpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVK 190 (350)
+..-.||+|.|+.|.+|+.+.|- -..+|.+.+.. -|..++-
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK----~F~~Ia~~l~~--Kt~~~cV 81 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPK----NFGLIASFLER--KTVAECV 81 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTT----CHHHHHHTCTT--CCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC----CHHHHHHHcCC--CCHHHHH
Confidence 45567999999999999999982 37888777644 3666554
No 46
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=59.56 E-value=5.5 Score=31.19 Aligned_cols=44 Identities=25% Similarity=0.160 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCCCCCC----ChHHHHhhcCCCCCC--HHHHHHHhhhh
Q 018802 152 TLHAHFVHAVQLLGGHERA----TPKSVLELMNVKDLT--LAHVKSHLQMY 196 (350)
Q Consensus 152 ELH~rFVeAVeqLGG~dkA----tPKkILelMnV~GLT--r~hVKSHLQKY 196 (350)
+|++-|.. |..+||.++. .|+.|.+.|+++.-| -..++.|=+||
T Consensus 45 dL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 45 DLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI 94 (107)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 78988876 6788998643 699999999997532 23445544444
No 47
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=58.15 E-value=2.7 Score=33.83 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCCCCC----CChHHHHhhcCCCCCCHHHHHHHhhhhhc
Q 018802 152 TLHAHFVHAVQLLGGHER----ATPKSVLELMNVKDLTLAHVKSHLQMYRT 198 (350)
Q Consensus 152 ELH~rFVeAVeqLGG~dk----AtPKkILelMnV~GLTr~hVKSHLQKYRl 198 (350)
+|++-|.. |..+||.++ ..|+.|.+.|+++. -..++.|=.||=.
T Consensus 50 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 97 (116)
T 2li6_A 50 NLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 97 (116)
T ss_dssp STTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHHHS
T ss_pred cHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHHHH
Confidence 68888875 788999865 47999999999986 5677877666643
No 48
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=57.09 E-value=6.1 Score=32.13 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhCCCCC----CChHHHHhhcCCCCCC--HHHHHHHhhhh
Q 018802 152 TLHAHFVHAVQLLGGHER----ATPKSVLELMNVKDLT--LAHVKSHLQMY 196 (350)
Q Consensus 152 ELH~rFVeAVeqLGG~dk----AtPKkILelMnV~GLT--r~hVKSHLQKY 196 (350)
+||+-|.. |..+||.++ ..|+.|.+.|+++.-| -..++.|=+||
T Consensus 52 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~ 101 (125)
T 2cxy_A 52 DLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY 101 (125)
T ss_dssp CHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 78888876 778899863 3799999999998532 12344444444
No 49
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=54.92 E-value=12 Score=30.47 Aligned_cols=45 Identities=16% Similarity=0.097 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCCC----CChHHHHhhcCCCCCCH--HHHHHHhhhhh
Q 018802 152 TLHAHFVHAVQLLGGHER----ATPKSVLELMNVKDLTL--AHVKSHLQMYR 197 (350)
Q Consensus 152 ELH~rFVeAVeqLGG~dk----AtPKkILelMnV~GLTr--~hVKSHLQKYR 197 (350)
+|++-|.. |..+||.++ ..|+.|.+.|+++.-+. ..++.|=+||=
T Consensus 43 DLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L 93 (122)
T 2eqy_A 43 DLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERIL 93 (122)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTH
T ss_pred cHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHh
Confidence 78888876 778999754 47999999999975331 35555555553
No 50
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=54.48 E-value=8.4 Score=29.58 Aligned_cols=44 Identities=23% Similarity=0.031 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhCCCCC----CChHHHHhhcCCCCCC--HHHHHHHhhhh
Q 018802 152 TLHAHFVHAVQLLGGHER----ATPKSVLELMNVKDLT--LAHVKSHLQMY 196 (350)
Q Consensus 152 ELH~rFVeAVeqLGG~dk----AtPKkILelMnV~GLT--r~hVKSHLQKY 196 (350)
+|++-|.. |..+||.++ ..|+.|.+.|+++.-+ -.+++.|=+||
T Consensus 37 DL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 37 DLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp CCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred cHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 67888876 778899865 5699999999997533 23444444444
No 51
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=50.09 E-value=12 Score=30.09 Aligned_cols=44 Identities=20% Similarity=0.052 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCCCC----CChHHHHhhcCCCCCC--HHHHHHHhhhh
Q 018802 152 TLHAHFVHAVQLLGGHER----ATPKSVLELMNVKDLT--LAHVKSHLQMY 196 (350)
Q Consensus 152 ELH~rFVeAVeqLGG~dk----AtPKkILelMnV~GLT--r~hVKSHLQKY 196 (350)
+|++-|.. |..+||.++ ..|+.|.+.|+++.-| ..+++.|=+||
T Consensus 41 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~ 90 (117)
T 2jrz_A 41 DLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 90 (117)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred cHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 78888876 678899753 4699999999997432 23455555555
No 52
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=47.71 E-value=14 Score=30.03 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhCCCCC----CChHHHHhhcCCCCC-C--HHHHHHHhhhhh
Q 018802 152 TLHAHFVHAVQLLGGHER----ATPKSVLELMNVKDL-T--LAHVKSHLQMYR 197 (350)
Q Consensus 152 ELH~rFVeAVeqLGG~dk----AtPKkILelMnV~GL-T--r~hVKSHLQKYR 197 (350)
+||+-|.. |..+||.++ ..|+.|.+.|+++.- | ...++.|=.||=
T Consensus 53 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L 104 (128)
T 1c20_A 53 DLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYL 104 (128)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHT
T ss_pred cHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence 78988876 678899763 469999999999752 2 355666655553
No 53
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=42.64 E-value=7.3 Score=30.64 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHhCCCCC----CChHHHHhhcCCCCC-C--HHHHHHHhhhhh
Q 018802 151 TTLHAHFVHAVQLLGGHER----ATPKSVLELMNVKDL-T--LAHVKSHLQMYR 197 (350)
Q Consensus 151 ~ELH~rFVeAVeqLGG~dk----AtPKkILelMnV~GL-T--r~hVKSHLQKYR 197 (350)
-+|++-|.. |..+||.++ ..|+.|.+.|+++.- | -.+++.|=+||=
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L 85 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLI 85 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHT
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Confidence 378888876 678899764 369999999999641 1 245666655553
No 54
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=42.48 E-value=18 Score=30.25 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCCCC----CChHHHHhhcCCCCC-C--HHHHHHHhhhhhc
Q 018802 152 TLHAHFVHAVQLLGGHER----ATPKSVLELMNVKDL-T--LAHVKSHLQMYRT 198 (350)
Q Consensus 152 ELH~rFVeAVeqLGG~dk----AtPKkILelMnV~GL-T--r~hVKSHLQKYRl 198 (350)
+|++-|.. |..+||.++ ..|+.|.+.|+++.- | -..++.|=+||=.
T Consensus 65 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~ 117 (145)
T 2kk0_A 65 DLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLY 117 (145)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSS
T ss_pred cHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHH
Confidence 78888876 778999864 469999999999752 1 3456666666543
No 55
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=37.41 E-value=32 Score=32.13 Aligned_cols=52 Identities=12% Similarity=0.170 Sum_probs=40.9
Q ss_pred CccccChHHHHHHHHHHHHhCCCCC--CC-hHHHHhhcCCCCCCHHHHHHHhhhhhcc
Q 018802 145 PRMRWTTTLHAHFVHAVQLLGGHER--AT-PKSVLELMNVKDLTLAHVKSHLQMYRTV 199 (350)
Q Consensus 145 pRlrWT~ELH~rFVeAVeqLGG~dk--At-PKkILelMnV~GLTr~hVKSHLQKYRl~ 199 (350)
.+-.||+|.-+.-+++|+++|- .+ .. +..|.++| +|=|-.+|+.|...|-..
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn-~r~ghk~W~~IAk~L--pGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPT-RRTTHTLYDEISHYV--PNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGG-GTTCSHHHHHHTTTS--TTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCc-CccccccHHHHHHHc--CCCCHHHHHHHHHHHHhh
Confidence 4568999999999999999982 21 12 88898875 477999999998877644
No 56
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=35.32 E-value=46 Score=24.70 Aligned_cols=45 Identities=9% Similarity=0.096 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhh
Q 018802 150 TTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYR 197 (350)
Q Consensus 150 T~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYR 197 (350)
++++.++.++++...|--+..+.+.|.+.++| ++..|..||.+-.
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~ 56 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLA 56 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHH
Confidence 67788899999999993356889999999997 5678888887664
No 57
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=34.30 E-value=51 Score=27.87 Aligned_cols=56 Identities=9% Similarity=0.123 Sum_probs=41.9
Q ss_pred CCCccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcc
Q 018802 143 RAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTV 199 (350)
Q Consensus 143 kKpRlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~ 199 (350)
+...--||..--++|+.|+..+|... -..+.|++.-...+-|.+.|+...+.+...
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~-~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPL-ERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGG-GCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCch-hHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 45667899999999999999999433 347889988788888999999766655543
No 58
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=31.80 E-value=20 Score=29.45 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCCCCC----CChHHHHhhcCCCCCCHHHHHHHhhhhhc
Q 018802 152 TLHAHFVHAVQLLGGHER----ATPKSVLELMNVKDLTLAHVKSHLQMYRT 198 (350)
Q Consensus 152 ELH~rFVeAVeqLGG~dk----AtPKkILelMnV~GLTr~hVKSHLQKYRl 198 (350)
+|++-|.. |..+||.++ ..|+.|.+.|+++. -..++.|=.||=.
T Consensus 49 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L~ 96 (123)
T 1kkx_A 49 NLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRILL 96 (123)
T ss_dssp CTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHHH
Confidence 78888865 788999765 46899999999986 6778877666654
No 59
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=27.55 E-value=91 Score=24.95 Aligned_cols=50 Identities=14% Similarity=0.277 Sum_probs=40.6
Q ss_pred ccccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcc
Q 018802 146 RMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTV 199 (350)
Q Consensus 146 RlrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~ 199 (350)
+..|-...-++.++.+..-| .++|+.|-+.+++ |+|+..|..||++-...
T Consensus 7 ~~~~md~~d~~IL~~L~~~g---~~s~~eLA~~l~~-giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 7 SGSWMTIWDDRILEIIHEEG---NGSPKELEDRDEI-RISKSSVSRRLKKLADH 56 (111)
T ss_dssp CCTTCCHHHHHHHHHHHHHS---CBCHHHHHTSTTC-CSCHHHHHHHHHHHHHT
T ss_pred hhhhcCHHHHHHHHHHHHcC---CCCHHHHHHHHhc-CCCHHHHHHHHHHHHHC
Confidence 45688888999999998877 4889999987622 46999999999987753
No 60
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=24.08 E-value=69 Score=23.85 Aligned_cols=59 Identities=10% Similarity=0.132 Sum_probs=39.8
Q ss_pred CCCccccChHHHHHHHHHHHHh------CCCCCCChHHHHhhcCCC--CCCHHHHHHH---hh-hhhcccc
Q 018802 143 RAPRMRWTTTLHAHFVHAVQLL------GGHERATPKSVLELMNVK--DLTLAHVKSH---LQ-MYRTVKS 201 (350)
Q Consensus 143 kKpRlrWT~ELH~rFVeAVeqL------GG~dkAtPKkILelMnV~--GLTr~hVKSH---LQ-KYRl~k~ 201 (350)
|+.+..||.+.-..|+++...+ |+..+..++.|-+.|.-. ..|-.|.+.- |+ .|+..+.
T Consensus 1 kkR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~ 71 (86)
T 2ebi_A 1 KKRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKH 71 (86)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999988542 445566788888877543 3677777643 33 4554443
No 61
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=23.01 E-value=90 Score=25.62 Aligned_cols=46 Identities=15% Similarity=0.293 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhCCCC----CCChHHHHhhcCCCCCC---HHHHHHHhhhhhc
Q 018802 152 TLHAHFVHAVQLLGGHE----RATPKSVLELMNVKDLT---LAHVKSHLQMYRT 198 (350)
Q Consensus 152 ELH~rFVeAVeqLGG~d----kAtPKkILelMnV~GLT---r~hVKSHLQKYRl 198 (350)
+|++-|. +|..+||.+ +-.|+.|.+.|+++... ...++.|=+||=.
T Consensus 43 DL~~Ly~-~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~ 95 (121)
T 2rq5_A 43 DLACFFR-LINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLL 95 (121)
T ss_dssp CHHHHHH-HHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHH
T ss_pred cHHHHHH-HHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhH
Confidence 6787775 677899974 45799999999997532 3556666666644
No 62
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=22.58 E-value=1.5e+02 Score=20.28 Aligned_cols=34 Identities=12% Similarity=-0.024 Sum_probs=25.6
Q ss_pred hCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhccc
Q 018802 164 LGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK 200 (350)
Q Consensus 164 LGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k 200 (350)
++|.+.-+-+.|-+.||+ +...|+.|+.+=+...
T Consensus 20 l~~~~g~s~~eIA~~lgi---s~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 20 IDMNTDYTLEEVGKQFDV---TRERIRQIEAKALRKL 53 (68)
T ss_dssp TTSSSCCCHHHHHHHHTC---CHHHHHHHHHHHHHGG
T ss_pred cCCCCCCCHHHHHHHHCc---CHHHHHHHHHHHHHHH
Confidence 334466889999999987 7888988887665544
No 63
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=22.26 E-value=1.4e+02 Score=17.95 Aligned_cols=41 Identities=7% Similarity=-0.058 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhc
Q 018802 150 TTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 198 (350)
Q Consensus 150 T~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl 198 (350)
+++....++..+. .| .+-+.|.+.++| +..-|..++.+|+.
T Consensus 7 ~~~~~~~i~~~~~--~g---~s~~~IA~~lgi---s~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 7 SDTERAQLDVMKL--LN---VSLHEMSRKISR---SRHCIRVYLKDPVS 47 (51)
T ss_dssp CHHHHHHHHHHHH--TT---CCHHHHHHHHTC---CHHHHHHHHHCSTT
T ss_pred CHHHHHHHHHHHH--cC---CCHHHHHHHHCc---CHHHHHHHHhhHHh
Confidence 4555555554432 23 468899999987 68889999888864
No 64
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics center for infectious DI protease, hydrolase; 2.15A {Mycobacterium abscessus}
Probab=20.87 E-value=1.2e+02 Score=26.78 Aligned_cols=59 Identities=8% Similarity=0.001 Sum_probs=38.8
Q ss_pred cccccCCCCCc--cccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhcc
Q 018802 136 SGVKRSVRAPR--MRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTV 199 (350)
Q Consensus 136 ~g~~~s~kKpR--lrWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~ 199 (350)
..+....++-| .+.+++.=+++-+|..... ++ =+.+++.+. +|+|..+|..-+..+...
T Consensus 20 ~~~~~~i~~~R~~~iKs~~EI~~~r~A~~i~~---~a-~~~~~~~i~-~G~tE~el~~~~~~~~~~ 80 (286)
T 3tav_A 20 GSMVGLFGRKKTVEQRTPGELDAMAAAGSIVG---AA-LVAVRDAAK-AGVSTLELDQVAESVIRE 80 (286)
T ss_dssp ---CCTTCSCSBCCBCCHHHHHHHHHHHHHHH---HH-HHHHHHHCC-TTCBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccCCHHHHHHHHHHHHHHH---HH-HHHHHHhcc-CCCcHHHHHHHHHHHHHH
Confidence 33444556678 8899988888877776654 11 233444443 799999999988876653
No 65
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=20.72 E-value=1.1e+02 Score=29.02 Aligned_cols=48 Identities=15% Similarity=0.168 Sum_probs=38.7
Q ss_pred ccChHHHHHHHHHHHHhCCCCCCChHHHHhhcCCCCCCHHHHHHHhhhhhccc
Q 018802 148 RWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK 200 (350)
Q Consensus 148 rWT~ELH~rFVeAVeqLGG~dkAtPKkILelMnV~GLTr~hVKSHLQKYRl~k 200 (350)
.||..--..||.|....|. -.-..|...|+ |-|.++|+-|.+.+-...
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr---~~~~~IA~ev~--~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGR---DDIDNIAKDVE--GKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCT---TCHHHHTTSST--TCCHHHHHHHHHHHHHHG
T ss_pred ccCHHHHHHHHHHHHHhCH---HHHHHHHHHhc--CCCHHHHHHHHHHHHHhH
Confidence 5999999999999999995 22567777765 679999999988766543
No 66
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=20.00 E-value=1.6e+02 Score=23.51 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCCCCCChHHHHhhcCC
Q 018802 152 TLHAHFVHAVQLLGGHERATPKSVLELMNV 181 (350)
Q Consensus 152 ELH~rFVeAVeqLGG~dkAtPKkILelMnV 181 (350)
.+-+..++.+.+-| .+..+=+.|.+..||
T Consensus 34 ~Il~aA~~lf~~~G-~~~~t~~~IA~~Agv 62 (230)
T 2iai_A 34 TLLSVAVQVFIERG-YDGTSMEHLSKAAGI 62 (230)
T ss_dssp CHHHHHHHHHHHHC-TTTCCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcC-ccccCHHHHHHHHCC
Confidence 45666667776666 888999999999998
Done!