Query 018804
Match_columns 350
No_of_seqs 182 out of 1188
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 06:18:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.1 1.2E-10 4E-15 90.2 5.1 70 257-326 35-105 (137)
2 3b5d_A Multidrug transporter E 98.7 3E-08 1E-12 74.0 6.9 70 257-326 35-105 (110)
3 3b5d_A Multidrug transporter E 98.7 2.8E-07 9.7E-12 68.7 12.2 69 83-157 34-103 (110)
4 2i68_A Protein EMRE; transmemb 98.6 8.4E-08 2.9E-12 74.1 7.4 70 83-158 34-104 (137)
5 3rko_J NADH-quinone oxidoreduc 65.7 49 0.0017 26.2 11.3 36 293-328 127-164 (184)
6 1pw4_A Glycerol-3-phosphate tr 63.1 81 0.0028 27.9 22.7 18 115-132 195-212 (451)
7 3l1l_A Arginine/agmatine antip 53.4 1.2E+02 0.0043 27.0 15.1 44 287-330 389-432 (445)
8 2xq2_A Sodium/glucose cotransp 28.8 3.8E+02 0.013 25.3 12.4 31 290-320 532-562 (593)
9 2zxe_G FXYD10, phospholemman-l 25.8 15 0.00052 24.0 0.1 20 309-328 25-44 (74)
10 2jo1_A Phospholemman; FXYD1, N 22.2 12 0.00041 24.3 -0.9 18 309-326 22-39 (72)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.06 E-value=1.2e-10 Score=90.22 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=53.9
Q ss_pred HhHhHHHHHHHHHHHhhccCCcchhhhh-hhHHHHHHHHHHHHHhccccchhhhhhhHHHhhhheeeeecc
Q 018804 257 GGVVVSGLIVFIQLWCTDKRGPVFATMF-NPVSTILVAILAYFVFGEKLFLGSIVGAVVVIGGLYLLLWGK 326 (350)
Q Consensus 257 ~gi~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~pv~~~l~~~~~~~e~~t~~~~iG~~li~~g~~l~~~~~ 326 (350)
.+++++++++.++++++++.+++.+..+ ..+.|+++++++++++||++++.+++|++++++|+++....+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 5667899999999999999999999988 899999999999999999999999999999999999987654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.70 E-value=3e-08 Score=74.01 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=64.1
Q ss_pred HhHhHHHHHHHHHHHhhccCCcchhhhh-hhHHHHHHHHHHHHHhccccchhhhhhhHHHhhhheeeeecc
Q 018804 257 GGVVVSGLIVFIQLWCTDKRGPVFATMF-NPVSTILVAILAYFVFGEKLFLGSIVGAVVVIGGLYLLLWGK 326 (350)
Q Consensus 257 ~gi~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~pv~~~l~~~~~~~e~~t~~~~iG~~li~~g~~l~~~~~ 326 (350)
.++++.++++.++.+++|+.+.+.+-.+ ..+.|+++.+++++++||++|+.+++|+.++++|+++....+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4556788999999999999999999888 899999999999999999999999999999999999886543
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.70 E-value=2.8e-07 Score=68.65 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcchhhhh-hchhhHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHhh
Q 018804 83 VLSLVGVTLTLNMYFASLRYTSPTFVASV-VNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTV 157 (350)
Q Consensus 83 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~il~~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l~~~ 157 (350)
..++++.++++.++..++++.|.+.+..+ ..+.|+++.+++++++||++++. +++|+.+.+.|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence 46666688899999999999999999888 79999999999999999999999 99999999999999864
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.62 E-value=8.4e-08 Score=74.11 Aligned_cols=70 Identities=16% Similarity=0.242 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHhhhccCcchhhhh-hchhhHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHHhhc
Q 018804 83 VLSLVGVTLTLNMYFASLRYTSPTFVASV-VNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIMTVY 158 (350)
Q Consensus 83 ~~g~~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~il~~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l~~~~ 158 (350)
+.++++.++++.++.+++++.|++.+..+ ..+.|+++.++++++++|++++. +++|++++++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence 56677789999999999999999999988 89999999999999999999999 999999999999999753
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=65.72 E-value=49 Score=26.25 Aligned_cols=36 Identities=6% Similarity=0.097 Sum_probs=25.7
Q ss_pred HHHHHHHhccccchhhhhhhHHHh--hhheeeeecccC
Q 018804 293 AILAYFVFGEKLFLGSIVGAVVVI--GGLYLLLWGKEG 328 (350)
Q Consensus 293 ~l~~~~~~~e~~t~~~~iG~~li~--~g~~l~~~~~~~ 328 (350)
--+|..++++..-+.+..+..+.+ +|.+...+++++
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAIvLarr~~~ 164 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAFHVGREERA 164 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 357888899999999999988863 455555544433
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=63.14 E-value=81 Score=27.93 Aligned_cols=18 Identities=17% Similarity=0.172 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHhccccc
Q 018804 115 VAAVTFVIAVVLRLETLD 132 (350)
Q Consensus 115 ~pi~~~il~~~~~~e~~~ 132 (350)
..+...++.+++.+|+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 195 CAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHHHHHHHCCCSST
T ss_pred HHHHHHHHHHhhccCCHh
Confidence 334444555566666544
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=53.41 E-value=1.2e+02 Score=27.02 Aligned_cols=44 Identities=7% Similarity=-0.081 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhccccchhhhhhhHHHhhhheeeeecccCCc
Q 018804 287 VSTILVAILAYFVFGEKLFLGSIVGAVVVIGGLYLLLWGKEGDH 330 (350)
Q Consensus 287 ~~pv~~~l~~~~~~~e~~t~~~~iG~~li~~g~~l~~~~~~~~~ 330 (350)
.-++++.++..+..-.........|..+++.|+.++...+++++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 389 AVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 44444444443333222223455688888888877776554433
No 8
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=28.85 E-value=3.8e+02 Score=25.33 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhccccchhhhhhhHHHhhhhe
Q 018804 290 ILVAILAYFVFGEKLFLGSIVGAVVVIGGLY 320 (350)
Q Consensus 290 v~~~l~~~~~~~e~~t~~~~iG~~li~~g~~ 320 (350)
+..++.-+++|.+.-...-.+.+.++++|++
T Consensus 532 ~~~~~~~~~~f~~~~~~~i~l~v~~~~~~~~ 562 (593)
T 2xq2_A 532 MIVLAVLYTLFWVNADAEITLIIFGVMAGVI 562 (593)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4444555666777777777788888888866
No 9
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=25.77 E-value=15 Score=24.04 Aligned_cols=20 Identities=45% Similarity=0.597 Sum_probs=10.6
Q ss_pred hhhhHHHhhhheeeeecccC
Q 018804 309 IVGAVVVIGGLYLLLWGKEG 328 (350)
Q Consensus 309 ~iG~~li~~g~~l~~~~~~~ 328 (350)
+.++++.+.|+.++..+|-|
T Consensus 25 ifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC--
T ss_pred hhHHHHHHHHHHHHHcCccc
Confidence 34455566776666655433
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=22.21 E-value=12 Score=24.28 Aligned_cols=18 Identities=17% Similarity=0.523 Sum_probs=10.4
Q ss_pred hhhhHHHhhhheeeeecc
Q 018804 309 IVGAVVVIGGLYLLLWGK 326 (350)
Q Consensus 309 ~iG~~li~~g~~l~~~~~ 326 (350)
+.++++.++|+.++..++
T Consensus 22 ifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 344555666766666444
Done!