Query 018804
Match_columns 350
No_of_seqs 182 out of 1188
Neff 9.7
Searched_HMMs 13730
Date Mon Mar 25 06:19:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018804.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018804hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 70.0 27 0.002 28.7 25.1 16 265-280 361-376 (447)
2 d1iwga8 f.35.1.1 (A:513-566,A: 36.6 71 0.0052 23.9 8.1 29 290-318 95-123 (222)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 19.0 48 0.0035 15.3 2.8 19 184-202 2-20 (27)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 13.0 42 0.003 24.9 1.9 45 276-320 63-107 (199)
5 d2r6gf1 e.70.1.1 (F:13-260) Ma 10.7 3.2E+02 0.023 20.6 6.8 64 81-155 5-68 (248)
6 d1u7ga_ f.44.1.1 (A:) Ammonium 6.4 5.9E+02 0.043 20.3 24.9 23 213-235 308-330 (383)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 5.5 1.9E+02 0.014 13.4 3.1 8 297-304 20-27 (30)
8 d1fftb2 f.17.2.1 (B:27-117) Cy 5.3 57 0.0042 20.7 -0.3 19 312-330 28-46 (91)
9 d1h2sa_ f.13.1.1 (A:) Sensory 4.1 6.6E+02 0.048 18.1 16.8 12 114-125 79-90 (225)
10 d1q90r_ f.23.12.1 (R:) ISP sub 3.1 3.9E+02 0.028 13.7 4.4 30 71-100 5-34 (39)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=70.03 E-value=27 Score=28.73 Aligned_cols=16 Identities=13% Similarity=0.125 Sum_probs=8.3
Q ss_pred HHHHHHHhhccCCcch
Q 018804 265 IVFIQLWCTDKRGPVF 280 (350)
Q Consensus 265 ~~~~~~~a~~~~~~~~ 280 (350)
....+....+..+...
T Consensus 361 ~~~~~~~~~~~~p~~~ 376 (447)
T d1pw4a_ 361 VMLIGLHALELAPKKA 376 (447)
T ss_dssp HHHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHHcCHHH
Confidence 3344455566666544
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=36.59 E-value=71 Score=23.94 Aligned_cols=29 Identities=28% Similarity=0.151 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhccccchhhhhhhHHHhhh
Q 018804 290 ILVAILAYFVFGEKLFLGSIVGAVVVIGG 318 (350)
Q Consensus 290 v~~~l~~~~~~~e~~t~~~~iG~~li~~g 318 (350)
+.+.+.+..+.+.+++....+|.++.++-
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 34455666778999999888888775543
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=18.97 E-value=48 Score=15.28 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 018804 184 LKGSFLTIASSITWSAMYI 202 (350)
Q Consensus 184 ~~G~~~~l~a~~~~a~~~v 202 (350)
.+|....-+++++|+.|.-
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 3577777788888887753
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=12.97 E-value=42 Score=24.88 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=23.6
Q ss_pred CCcchhhhhhhHHHHHHHHHHHHHhccccchhhhhhhHHHhhhhe
Q 018804 276 RGPVFATMFNPVSTILVAILAYFVFGEKLFLGSIVGAVVVIGGLY 320 (350)
Q Consensus 276 ~~~~~~~~~~~~~pv~~~l~~~~~~~e~~t~~~~iG~~li~~g~~ 320 (350)
..+.....+...-.+........++|.+++.....+..+.++..+
T Consensus 63 ~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 63 FRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLV 107 (199)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHH
T ss_pred hhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhc
Confidence 333333333333333444444566777777777776666555433
No 5
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=10.69 E-value=3.2e+02 Score=20.60 Aligned_cols=64 Identities=11% Similarity=-0.025 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCcchhhhhhchhhHHHHHHHHHHhccccccccccccchhhHHHHHHHHHHHH
Q 018804 81 IFVLSLVGVTLTLNMYFASLRYTSPTFVASVVNTVAAVTFVIAVVLRLETLDLRNARGMAKVLGTLVSLAGVTIM 155 (350)
Q Consensus 81 ~~~~g~~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~il~~~~~~e~~~~~~~~~~~~~~~~~l~~~Gv~l~ 155 (350)
+.++|++ .++..+.....+....-..+. ..-+.+.++.++++.+|.-+. +++.=.++++.+..+
T Consensus 5 ~~ll~l~-~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~------kyi~PG~~~l~~Fvi 68 (248)
T d2r6gf1 5 WSVLGLL-GLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAW------RYVYPGMAGMGLFVL 68 (248)
T ss_dssp HHHHHHH-HHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTH------HHHHHHHHHHHHHTH
T ss_pred HHHHHHH-HHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccce------ehhhhHHHHHHHHHH
Confidence 3445555 333433333444333333322 344556666777888887777 777666655555544
No 6
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=6.39 E-value=5.9e+02 Score=20.32 Aligned_cols=23 Identities=4% Similarity=-0.051 Sum_probs=15.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 018804 213 AQLSLTTWMCFLGAAQSAVFTVI 235 (350)
Q Consensus 213 ~~~~~~~~~~~~~~i~~~~~~~~ 235 (350)
|+..........+..-.+...++
T Consensus 308 D~~~~~~vHg~~Gi~G~l~~glf 330 (383)
T d1u7ga_ 308 DPCDVFGVHGVCGIVGCIMTGIF 330 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred cccceEeehhhhHHHHHHHHHHh
Confidence 77777777776666555555554
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.47 E-value=1.9e+02 Score=13.44 Aligned_cols=8 Identities=25% Similarity=0.235 Sum_probs=4.5
Q ss_pred HHHhcccc
Q 018804 297 YFVFGEKL 304 (350)
Q Consensus 297 ~~~~~e~~ 304 (350)
.++|+|+|
T Consensus 20 aiffrepp 27 (30)
T d2axtt1 20 AIFFREPP 27 (30)
T ss_dssp HHHTSCCC
T ss_pred HHHhcCCC
Confidence 35566665
No 8
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.30 E-value=57 Score=20.65 Aligned_cols=19 Identities=11% Similarity=-0.234 Sum_probs=8.9
Q ss_pred hHHHhhhheeeeecccCCc
Q 018804 312 AVVVIGGLYLLLWGKEGDH 330 (350)
Q Consensus 312 ~~li~~g~~l~~~~~~~~~ 330 (350)
+.+.+.|..++...|.|++
T Consensus 28 v~v~V~~~~~~~~~ryR~~ 46 (91)
T d1fftb2 28 VVIPAILMAVGFAWKYRAS 46 (91)
T ss_dssp TTTHHHHHHHTTTTTTTTS
T ss_pred HHHHHHHHHHhhheeeecc
Confidence 3344455555554444433
No 9
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=4.12 E-value=6.6e+02 Score=18.08 Aligned_cols=12 Identities=8% Similarity=0.468 Sum_probs=7.4
Q ss_pred hhhHHHHHHHHH
Q 018804 114 TVAAVTFVIAVV 125 (350)
Q Consensus 114 ~~pi~~~il~~~ 125 (350)
+.|+....+..+
T Consensus 79 T~PLll~~l~ll 90 (225)
T d1h2sa_ 79 TTPLIVYFLGLL 90 (225)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 778876555543
No 10
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.14 E-value=3.9e+02 Score=13.70 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=17.0
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 018804 71 PKLTLALFLEIFVLSLVGVTLTLNMYFASL 100 (350)
Q Consensus 71 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~al 100 (350)
+...+|+...++..|.++.......+=++.
T Consensus 5 pDMgrR~~MNLll~G~~~~~~~g~l~py~~ 34 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAGLPITTLALGYGA 34 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccchhhhhhccceeE
Confidence 344566777777777775444444443333
Done!