BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018805
         (350 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9VGG5|CAD87_DROME Cadherin-87A OS=Drosophila melanogaster GN=Cad87A PE=1 SV=4
          Length = 1975

 Score = 35.4 bits (80), Expect = 0.63,   Method: Composition-based stats.
 Identities = 50/198 (25%), Positives = 88/198 (44%), Gaps = 23/198 (11%)

Query: 40   FVVYRTTYYQYKQTEMEAKF--SPFDISKGSRFSSGRLKSLPRGIVQARSDLEL--RPL- 94
            F++  +  Y++  T+       SPF IS+  R S+  + +      Q R +LE+  R L 
Sbjct: 1590 FMIVASNLYKFGATKSTGSIVPSPFAISQDGRISANTIMAEYN---QDRFELEIVARELE 1646

Query: 95   --WSTSSSRKKFGVYSNRNLLAI-----PAGIKQ-KDNVDAIVRKFLPENFTV--ILFHY 144
               S++S++    V+    L+ +     P  + Q ++ + A +R        V  I FH 
Sbjct: 1647 QPQSSASTKVNIWVFDGTQLVRVILSRPPEEVYQEQEEIIAELRNATQHRIIVDEIRFHL 1706

Query: 145  DGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPR 204
            D  +   R +DW +   H A   QT+       +  D+  NYDY+  +     +EN  P 
Sbjct: 1707 D-SIGRIR-MDWCDLYFH-AVDPQTQQIAPVDEILKDIDRNYDYLKDYYAGFAIENVVP- 1762

Query: 205  RYLEIVKSEGFEISQPAL 222
             Y+ IV+ E F+++   L
Sbjct: 1763 AYIAIVQDE-FDLAVAGL 1779


>sp|B4N549|QTRD1_DROWI Queuine tRNA-ribosyltransferase subunit QTRTD1 homolog
           OS=Drosophila willistoni GN=GK20504 PE=3 SV=1
          Length = 428

 Score = 33.1 bits (74), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 197 GVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRA---RTKKFHRRVYDLRGSV 253
           G E+  P RY+EI+ S   +I Q   D ++     K  ++    RT++F   +Y+  G +
Sbjct: 128 GKESLTPERYMEIIASFKPDIYQGLCDADTNLESSKKRVQKSVDRTERFMDYIYEQHGKL 187

Query: 254 KCTNISEGPPCTG 266
           + T+ S   P  G
Sbjct: 188 QSTSSSLLAPIVG 200


>sp|Q54BC6|PSMD2_DICDI 26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium
           discoideum GN=psmD2 PE=1 SV=1
          Length = 893

 Score = 31.6 bits (70), Expect = 9.1,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 148 VNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHP-DVVSNYDYIFLWDEDLGVENFDPRRY 206
           VNA+    +    + + A+  TKWWF  R L     V++   + LWD D G+   D   Y
Sbjct: 379 VNAFVNAGFGKDKL-MTAEEDTKWWFKNRELGILSTVASTGMVVLWDIDGGLTKIDKFLY 437


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.138    0.444 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,304,576
Number of Sequences: 539616
Number of extensions: 5686716
Number of successful extensions: 13314
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 13313
Number of HSP's gapped (non-prelim): 10
length of query: 350
length of database: 191,569,459
effective HSP length: 118
effective length of query: 232
effective length of database: 127,894,771
effective search space: 29671586872
effective search space used: 29671586872
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)