Query 018805
Match_columns 350
No_of_seqs 133 out of 156
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 04:10:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018805.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018805hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05212 DUF707: Protein of un 100.0 4E-116 8E-121 836.6 22.8 261 68-336 3-263 (294)
2 TIGR01556 rhamnosyltran L-rham 94.3 0.18 3.9E-06 46.6 7.7 127 184-324 72-201 (281)
3 cd04185 GT_2_like_b Subfamily 93.4 0.28 6E-06 42.4 6.7 103 184-331 78-180 (202)
4 cd04186 GT_2_like_c Subfamily 92.5 0.31 6.7E-06 39.6 5.5 92 184-324 73-165 (166)
5 cd02510 pp-GalNAc-T pp-GalNAc- 89.2 3.9 8.5E-05 38.3 10.2 138 184-326 82-227 (299)
6 cd02526 GT2_RfbF_like RfbF is 88.9 1 2.2E-05 39.7 5.7 126 185-324 75-204 (237)
7 PF13641 Glyco_tranf_2_3: Glyc 86.4 1 2.2E-05 39.5 4.3 196 111-328 3-214 (228)
8 cd02520 Glucosylceramide_synth 84.8 1 2.2E-05 39.3 3.5 93 184-324 85-177 (196)
9 cd02525 Succinoglycan_BP_ExoA 83.1 2.5 5.5E-05 37.0 5.3 129 184-328 80-212 (249)
10 cd04195 GT2_AmsE_like GT2_AmsE 80.4 1 2.3E-05 38.5 1.8 40 183-222 78-118 (201)
11 cd06442 DPM1_like DPM1_like re 79.9 0.92 2E-05 39.4 1.3 36 184-219 77-112 (224)
12 PF01762 Galactosyl_T: Galacto 78.3 4.4 9.5E-05 36.2 5.2 176 91-307 6-186 (195)
13 cd06433 GT_2_WfgS_like WfgS an 77.7 3.1 6.7E-05 34.8 3.8 37 184-220 74-111 (202)
14 COG1216 Predicted glycosyltran 76.1 14 0.0003 35.2 8.2 139 186-331 85-227 (305)
15 cd06434 GT2_HAS Hyaluronan syn 75.1 5 0.00011 35.2 4.6 62 160-224 55-116 (235)
16 PLN02726 dolichyl-phosphate be 73.2 4.6 0.0001 36.6 4.0 197 108-324 8-218 (243)
17 PF00535 Glycos_transf_2: Glyc 68.3 4.3 9.2E-05 32.4 2.4 38 184-221 77-114 (169)
18 cd06421 CESA_CelA_like CESA_Ce 67.3 4.8 0.0001 35.1 2.7 131 184-329 83-216 (234)
19 PF02434 Fringe: Fringe-like; 66.8 4.3 9.4E-05 38.6 2.5 134 184-342 85-225 (252)
20 cd04188 DPG_synthase DPG_synth 64.3 3.2 7E-05 36.3 1.0 36 184-219 81-116 (211)
21 PF13632 Glyco_trans_2_3: Glyc 61.1 11 0.00024 32.5 3.7 125 188-328 1-128 (193)
22 cd06435 CESA_NdvC_like NdvC_li 60.3 5.2 0.00011 35.3 1.6 125 185-323 84-208 (236)
23 PF09258 Glyco_transf_64: Glyc 56.6 13 0.00029 35.4 3.8 95 118-213 8-103 (247)
24 PRK11204 N-glycosyltransferase 49.6 43 0.00093 33.0 6.2 199 108-329 53-265 (420)
25 PTZ00260 dolichyl-phosphate be 48.4 18 0.0004 35.5 3.4 190 108-319 69-287 (333)
26 PRK10714 undecaprenyl phosphat 47.6 66 0.0014 31.4 7.1 105 108-218 5-122 (325)
27 cd06437 CESA_CaSu_A2 Cellulose 46.1 12 0.00027 33.1 1.7 132 184-329 86-218 (232)
28 cd00761 Glyco_tranf_GTA_type G 44.9 20 0.00043 27.6 2.5 22 185-206 77-98 (156)
29 cd06423 CESA_like CESA_like is 44.7 14 0.00031 29.2 1.7 38 185-222 78-116 (180)
30 KOG2264 Exostosin EXT1L [Signa 43.9 28 0.00061 38.2 4.2 97 117-214 631-753 (907)
31 cd04184 GT2_RfbC_Mx_like Myxoc 42.9 20 0.00043 30.6 2.4 38 184-221 82-120 (202)
32 cd04192 GT_2_like_e Subfamily 41.9 21 0.00045 30.8 2.4 38 184-221 81-118 (229)
33 PF13506 Glyco_transf_21: Glyc 41.7 18 0.0004 32.3 2.1 123 184-325 30-154 (175)
34 PF10111 Glyco_tranf_2_2: Glyc 39.4 38 0.00083 32.0 3.9 95 113-208 2-111 (281)
35 cd04196 GT_2_like_d Subfamily 38.5 26 0.00056 29.9 2.4 46 274-324 158-203 (214)
36 cd06439 CESA_like_1 CESA_like_ 38.4 19 0.00041 32.1 1.6 40 184-223 108-147 (251)
37 cd02522 GT_2_like_a GT_2_like_ 37.7 25 0.00054 30.4 2.3 41 184-224 71-111 (221)
38 cd06427 CESA_like_2 CESA_like_ 36.5 34 0.00074 30.8 3.0 38 184-221 83-122 (241)
39 TIGR03469 HonB hopene-associat 35.7 35 0.00076 33.8 3.2 33 186-218 134-166 (384)
40 KOG2287 Galactosyltransferases 35.2 86 0.0019 31.4 5.8 185 81-308 100-293 (349)
41 PRK14583 hmsR N-glycosyltransf 32.7 1.3E+02 0.0029 30.4 6.8 99 109-212 75-182 (444)
42 cd06420 GT2_Chondriotin_Pol_N 31.9 32 0.00069 28.8 1.9 27 184-210 78-104 (182)
43 PF09828 Chrome_Resist: Chroma 29.0 37 0.00081 30.5 1.9 49 170-224 14-80 (135)
44 PRK10073 putative glycosyl tra 27.7 55 0.0012 32.0 3.0 107 108-219 5-119 (328)
45 PF12996 DUF3880: DUF based on 27.4 31 0.00067 27.2 1.0 25 180-214 13-37 (79)
46 cd06913 beta3GnTL1_like Beta 1 27.1 67 0.0015 28.2 3.2 31 184-214 83-113 (219)
47 KOG3708 Uncharacterized conser 25.7 33 0.00072 37.3 1.1 69 138-209 52-121 (681)
48 PF12621 DUF3779: Phosphate me 25.5 38 0.00081 28.0 1.2 43 175-221 34-76 (95)
49 KOG1555 26S proteasome regulat 24.5 38 0.00082 34.3 1.3 41 255-295 80-120 (316)
50 cd06438 EpsO_like EpsO protein 24.5 77 0.0017 27.1 3.0 29 184-212 80-108 (183)
51 cd06430 GT8_like_2 GT8_like_2 24.1 1.6E+02 0.0035 29.5 5.5 102 111-214 2-124 (304)
52 TIGR03472 HpnI hopanoid biosyn 23.9 55 0.0012 32.2 2.3 36 184-219 125-160 (373)
53 PLN02867 Probable galacturonos 22.7 34 0.00075 36.8 0.6 34 175-209 334-367 (535)
54 KOG2431 1, 2-alpha-mannosidase 22.5 86 0.0019 33.5 3.4 92 28-132 13-106 (546)
55 PRK11498 bcsA cellulose syntha 22.0 2.3E+02 0.005 32.3 6.8 109 108-221 259-376 (852)
56 cd04179 DPM_DPG-synthase_like 21.9 59 0.0013 27.1 1.8 38 184-221 78-115 (185)
57 PHA03165 hypothetical protein; 21.0 63 0.0014 24.7 1.5 32 30-70 23-54 (57)
58 cd04191 Glucan_BSP_ModH Glucan 21.0 66 0.0014 30.5 2.1 51 168-219 79-130 (254)
No 1
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=100.00 E-value=3.6e-116 Score=836.57 Aligned_cols=261 Identities=62% Similarity=1.162 Sum_probs=251.4
Q ss_pred cccCCCCCCCCCCCccccCCCcceecCCCCCCCCccCCCCCCccEEEEeccCcccccHHHHHhhcCCCCcEEEEEEeCCC
Q 018805 68 SRFSSGRLKSLPRGIVQARSDLELRPLWSTSSSRKKFGVYSNRNLLAIPAGIKQKDNVDAIVRKFLPENFTVILFHYDGD 147 (350)
Q Consensus 68 ~~~~~~~~~~LP~giv~~~sd~~~r~lwg~p~~~~~~~~~~~k~Lv~~~VG~kqk~~Vd~~v~kf~~~nFdv~LfhYDg~ 147 (350)
.+++|+|+|+||+|||+++|||+||||||.|+++. +.++|||||||||+|||++||++|+|| ++|||||||||||+
T Consensus 3 ~~~~p~g~e~Lp~giv~~~sd~~~r~lw~~p~~~~---~~~~k~Lla~~VG~kqk~~vd~~v~Kf-~~nF~i~LfhYDg~ 78 (294)
T PF05212_consen 3 VPCNPRGAERLPPGIVVRESDLELRPLWGNPSEDL---PKKPKYLLAMTVGIKQKDNVDAIVKKF-SDNFDIMLFHYDGR 78 (294)
T ss_pred cCCCCCccccCCCCccccCCCceeeecCCCccccc---cCCCceEEEEEecHHHHhhhhHHHhhh-ccCceEEEEEecCC
Confidence 46899999999999999999999999999999887 457899999999999999999999999 89999999999999
Q ss_pred CCccCCCCCCCceEEEEEeccchhhhhccccCccccCCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcCCCCC
Q 018805 148 VNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNST 227 (350)
Q Consensus 148 vd~W~d~~ws~~aiHv~a~kqtKww~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~ 227 (350)
+|+|++||||++||||+++|||||||||||||||+|++|||||||||||+||+|+|+|||+||++||||||||||+++++
T Consensus 79 vd~w~~~~ws~~aiHv~~~kqtKww~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~ 158 (294)
T PF05212_consen 79 VDEWDDFEWSDRAIHVSARKQTKWWFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSS 158 (294)
T ss_pred cCchhhcccccceEEEEeccceEEeehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ceeeeeeeeecCcccceeeecccCCccCCCCCCCCCccceEEEeccccChhHHHHhhhhhccCCcceehhhhhhhhhhcC
Q 018805 228 EIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQG 307 (350)
Q Consensus 228 ~i~h~iT~r~~~~~vHr~~~~~~g~~~C~~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLDf~w~~ca~g 307 (350)
++||+||+|++.+++|| +.++.+.|.+++++||||||||||||||||+|||||||||||||+|||||||+|++|+ +
T Consensus 159 ~~~~~iT~R~~~~~vhr---~~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~-~ 234 (294)
T PF05212_consen 159 EIHHPITKRRPDSEVHR---KTRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCA-G 234 (294)
T ss_pred eeeeeEEeecCCceeEe---ccCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHh-c
Confidence 89999999999999998 4577888999999999999999999999999999999999999999999999999999 5
Q ss_pred CCCCcEEEEeeeeEEeeccCCCCCCCCCc
Q 018805 308 DRTKNVGIIDSEYVVHQGIQTLGGQPPTR 336 (350)
Q Consensus 308 ~~~~kiGVVDa~~V~H~~~ptlG~~~~~~ 336 (350)
++++||||||||||+|+|+|||||++...
T Consensus 235 ~~~~kiGVVDs~~VvH~gvptLG~~~~~~ 263 (294)
T PF05212_consen 235 DRHKKIGVVDSQYVVHTGVPTLGGQGNSE 263 (294)
T ss_pred cccccEEEEeeEEEEEcCCCcCCCccccc
Confidence 79999999999999999999999985544
No 2
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=94.33 E-value=0.18 Score=46.62 Aligned_cols=127 Identities=14% Similarity=0.067 Sum_probs=73.1
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHh--CCccccCCc-CCCCCceeeeeeeeecCcccceeeecccCCccCCCCCC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSE--GFEISQPAL-DPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISE 260 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~--gLeISQPAL-d~~s~~i~h~iT~r~~~~~vHr~~~~~~g~~~C~~~~~ 260 (350)
+.+|||++.|+|..++.-.++++++.+++. +.-+..|.. +.+.. ...+...... . .-+... .. ..+
T Consensus 72 ~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~-------~~-~~~ 140 (281)
T TIGR01556 72 RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTS-RRLPAIHLDG-L-LLRQIS-------LD-GLT 140 (281)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCc-ccCCceeecc-c-ceeeec-------cc-ccC
Confidence 479999999999999998999999988876 577777764 33221 1222221111 1 000000 00 000
Q ss_pred CCCccceEEEeccccChhHHHHhhhhhccCCcceehhhhhhhhhhcCCCCCcEEEEeeeeEEee
Q 018805 261 GPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQ 324 (350)
Q Consensus 261 ~ppcT~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLDf~w~~ca~g~~~~kiGVVDa~~V~H~ 324 (350)
.+.-+.++=.-+.+++|++++.+= .+..++ -.++.|.-|..-+. ..+.++.++....+.|.
T Consensus 141 ~~~~~~~~~~sg~li~~~~~~~iG-~fde~~-fi~~~D~e~~~R~~-~~G~~i~~~~~~~~~H~ 201 (281)
T TIGR01556 141 TPQKTSFLISSGCLITREVYQRLG-MMDEEL-FIDHVDTEWSLRAQ-NYGIPLYIDPDIVLEHR 201 (281)
T ss_pred CceeccEEEcCcceeeHHHHHHhC-CccHhh-cccchHHHHHHHHH-HCCCEEEEeCCEEEEEe
Confidence 111111111112368999999773 444433 34567766653333 23578999999999997
No 3
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.36 E-value=0.28 Score=42.35 Aligned_cols=103 Identities=19% Similarity=0.245 Sum_probs=67.1
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcCCCCCceeeeeeeeecCcccceeeecccCCccCCCCCCCCC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGPP 263 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~iT~r~~~~~vHr~~~~~~g~~~C~~~~~~pp 263 (350)
+.+||+++.|+|..++...++++.+.++..+..+..|......+ +
T Consensus 78 ~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-----------------------------------~ 122 (202)
T cd04185 78 LGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG-----------------------------------S 122 (202)
T ss_pred cCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeEcCCC-----------------------------------c
Confidence 68999999999999998888888887764455444443221110 1
Q ss_pred ccceEEEeccccChhHHHHhhhhhccCCcceehhhhhhhhhhcCCCCCcEEEEeeeeEEeeccCCCCC
Q 018805 264 CTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQGIQTLGG 331 (350)
Q Consensus 264 cT~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLDf~w~~ca~g~~~~kiGVVDa~~V~H~~~ptlG~ 331 (350)
+.+ -+++|++|+.+ ..+ .+.-..||=|.-+.+-+. ..+.++ .+.+..+.|....+.+.
T Consensus 123 ~~~------~~~~~~~~~~~-g~~-~~~~~~~~eD~~~~~r~~-~~G~~i-~~~~~~~~h~~~~~~~~ 180 (202)
T cd04185 123 FVG------VLISRRVVEKI-GLP-DKEFFIWGDDTEYTLRAS-KAGPGI-YVPDAVVVHKTAINKGS 180 (202)
T ss_pred eEE------EEEeHHHHHHh-CCC-ChhhhccchHHHHHHHHH-HcCCcE-EecceEEEEcccccccc
Confidence 111 24888888866 233 233457887766554333 135688 99999999997665544
No 4
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.45 E-value=0.31 Score=39.59 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=60.6
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHh-CCccccCCcCCCCCceeeeeeeeecCcccceeeecccCCccCCCCCCCC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSE-GFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGP 262 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~-gLeISQPALd~~s~~i~h~iT~r~~~~~vHr~~~~~~g~~~C~~~~~~p 262 (350)
+.+|||++.|+|...+...+.++.+.+.+. +..+..+.
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------------------------- 111 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK----------------------------------------- 111 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-----------------------------------------
Confidence 379999999999999888888888754443 22222222
Q ss_pred CccceEEEeccccChhHHHHhhhhhccCCcceehhhhhhhhhhcCCCCCcEEEEeeeeEEee
Q 018805 263 PCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQ 324 (350)
Q Consensus 263 pcT~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLDf~w~~ca~g~~~~kiGVVDa~~V~H~ 324 (350)
+=.-+.+|++++++.+- .+.. ....+|-|..+...+. ..+.++..+....+.|.
T Consensus 112 -----~~~~~~~~~~~~~~~~~-~~~~-~~~~~~eD~~~~~~~~-~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 112 -----VSGAFLLVRREVFEEVG-GFDE-DFFLYYEDVDLCLRAR-LAGYRVLYVPQAVIYHH 165 (166)
T ss_pred -----CceeeEeeeHHHHHHcC-CCCh-hhhccccHHHHHHHHH-HcCCeEEEccceEEEec
Confidence 00124578999998653 2322 2233777777665443 24679999999999996
No 5
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=89.20 E-value=3.9 Score=38.33 Aligned_cols=138 Identities=14% Similarity=0.063 Sum_probs=75.6
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcCCCCC-ceeeeeeee-ec---CcccceeeecccCCccCCCC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNST-EIHHKFTIR-AR---TKKFHRRVYDLRGSVKCTNI 258 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~-~i~h~iT~r-~~---~~~vHr~~~~~~g~~~C~~~ 258 (350)
+..|||.+.|+|..++..-++++++.+.+..-.+.-|.+..-.+ ...++-... .. ...++...........+...
T Consensus 82 A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (299)
T cd02510 82 ATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEERRRES 161 (299)
T ss_pred ccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHhhhcC
Confidence 68999999999999999999999999998887788787653221 112221110 00 00011000000000000111
Q ss_pred CCCCCccceEEEeccccChhHHHHhhhhhccCCcceeh-hh--hhhhhhhcCCCCCcEEEEeeeeEEeecc
Q 018805 259 SEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWG-MD--MKLGYCAQGDRTKNVGIIDSEYVVHQGI 326 (350)
Q Consensus 259 ~~~ppcT~FVEiMAPVFSR~Awrcvw~miqNdlvhGWG-LD--f~w~~ca~g~~~~kiGVVDa~~V~H~~~ 326 (350)
...+..+..+-..+=+++|++|+.+= .+.. ....|| =| +.+. +.+ .+.+|-++-...|.|...
T Consensus 162 ~~~~~~~~~~~g~~~~irr~~~~~vG-gfDe-~~~~~~~ED~Dl~~R-~~~--~G~~i~~~p~a~v~H~~~ 227 (299)
T cd02510 162 PTAPIRSPTMAGGLFAIDREWFLELG-GYDE-GMDIWGGENLELSFK-VWQ--CGGSIEIVPCSRVGHIFR 227 (299)
T ss_pred CCCCccCccccceeeEEEHHHHHHhC-CCCC-cccccCchhHHHHHH-HHH--cCCeEEEeeccEEEEecc
Confidence 11222233333333358999998773 3433 345565 34 4443 222 246899999889999865
No 6
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=88.89 E-value=1 Score=39.68 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=62.1
Q ss_pred CccEEEEecCcccCCCCCHHHHH---HHHH-HhCCccccCCcCCCCCceeeeeeeeecCcccceeeecccCCccCCCCCC
Q 018805 185 NYDYIFLWDEDLGVENFDPRRYL---EIVK-SEGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISE 260 (350)
Q Consensus 185 ~YDYIflwDDDL~vd~f~i~ryf---~Ivr-~~gLeISQPALd~~s~~i~h~iT~r~~~~~vHr~~~~~~g~~~C~~~~~ 260 (350)
.||||++.|+|..++...+.+++ +..+ ...+.+.+|...........+.. +.....+. .. .+.. .
T Consensus 75 ~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~------~~~~--~ 143 (237)
T cd02526 75 GADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGV-RKSGYKLR--IQ------KEGE--E 143 (237)
T ss_pred CCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccce-eccCccce--ec------cccc--C
Confidence 68999999999999988888885 2222 22445555554322211111111 10110000 00 0000 0
Q ss_pred CCCccceEEEeccccChhHHHHhhhhhccCCcceehhhhhhhhhhcCCCCCcEEEEeeeeEEee
Q 018805 261 GPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQ 324 (350)
Q Consensus 261 ~ppcT~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLDf~w~~ca~g~~~~kiGVVDa~~V~H~ 324 (350)
..+-..++=.-+-+|+|++++.+= .+..+. ...|-|..+...+. ..+.++..+....+.|.
T Consensus 144 ~~~~~~~~~~~~~~~rr~~~~~~g-gfd~~~-~~~~eD~d~~~r~~-~~G~~~~~~~~~~v~h~ 204 (237)
T cd02526 144 GLKEVDFLITSGSLISLEALEKVG-GFDEDL-FIDYVDTEWCLRAR-SKGYKIYVVPDAVLKHE 204 (237)
T ss_pred CceEeeeeeccceEEcHHHHHHhC-CCCHHH-cCccchHHHHHHHH-HcCCcEEEEcCeEEEec
Confidence 000001111111258999999874 233222 23345655554333 24568998888888887
No 7
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=86.41 E-value=1 Score=39.47 Aligned_cols=196 Identities=16% Similarity=0.134 Sum_probs=90.5
Q ss_pred cEEEEeccCcccccHHHHHhhcCC---CCcEEEEEEeCCCCCccCC-C-----CCCCceEEEEEe---cc--chhhhhcc
Q 018805 111 NLLAIPAGIKQKDNVDAIVRKFLP---ENFTVILFHYDGDVNAWRG-L-----DWSNKAIHIAAQ---NQ--TKWWFAKR 176 (350)
Q Consensus 111 ~Lv~~~VG~kqk~~Vd~~v~kf~~---~nFdv~LfhYDg~vd~W~d-~-----~ws~~aiHv~a~---kq--tKww~akR 176 (350)
-.|++++=.. ...+...|+.... .++.|++..- +..++=.+ + ++.+..+++... .+ +|-..+..
T Consensus 3 v~Vvip~~~~-~~~l~~~l~sl~~~~~~~~~v~vvd~-~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~ 80 (228)
T PF13641_consen 3 VSVVIPAYNE-DDVLRRCLESLLAQDYPRLEVVVVDD-GSDDETAEILRALAARYPRVRVRVIRRPRNPGPGGKARALNE 80 (228)
T ss_dssp EEEE--BSS--HHHHHHHHHHHTTSHHHTEEEEEEEE--SSS-GCTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHH
T ss_pred EEEEEEecCC-HHHHHHHHHHHHcCCCCCeEEEEEEC-CCChHHHHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHH
Confidence 4455565433 2345555554432 5688888773 33222111 1 233223444322 22 34444444
Q ss_pred ccCccccCCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcCCCCCceeeeeeeeecCc--ccceeeecccCCcc
Q 018805 177 FLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTK--KFHRRVYDLRGSVK 254 (350)
Q Consensus 177 fLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~iT~r~~~~--~vHr~~~~~~g~~~ 254 (350)
.+. ...+|||++.|+|..++...+.++++.+...+..+.|+........ ..++.-.... .-|...+.
T Consensus 81 ~~~---~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------ 149 (228)
T PF13641_consen 81 ALA---AARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDR--NWLTRLQDLFFARWHLRFRS------ 149 (228)
T ss_dssp HHH---H---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCC--CEEEE-TT--S-EETTTS-T------
T ss_pred HHH---hcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCC--CHHHHHHHHHHhhhhhhhhh------
Confidence 442 2459999999999999999999999999778888888766433211 1122111100 00000000
Q ss_pred CCCCCCCCCccceEEEeccccChhHHHHhhhhhccCCcceehhhhhhhhhhcCCCCCcEEEEeeeeEEeeccCC
Q 018805 255 CTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQGIQT 328 (350)
Q Consensus 255 C~~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLDf~w~~ca~g~~~~kiGVVDa~~V~H~~~pt 328 (350)
.......+.++| -+=+|+|++++.+- .+.. ..-|=|+.+...+.. .+.++.......+.|...++
T Consensus 150 ~~~~~~~~~~~G----~~~~~rr~~~~~~g-~fd~---~~~~eD~~l~~r~~~-~G~~~~~~~~~~v~~~~~~~ 214 (228)
T PF13641_consen 150 GRRALGVAFLSG----SGMLFRRSALEEVG-GFDP---FILGEDFDLCLRLRA-AGWRIVYAPDALVYHEEPSS 214 (228)
T ss_dssp T-B----S-B------TEEEEEHHHHHHH--S--S---SSSSHHHHHHHHHHH-TT--EEEEEEEEEEE--SSS
T ss_pred hhcccceeeccC----cEEEEEHHHHHHhC-CCCC---CCcccHHHHHHHHHH-CCCcEEEECCcEEEEeCCCC
Confidence 000000111111 12358999999885 2322 444577777644332 46799999988888885444
No 8
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=84.79 E-value=1 Score=39.27 Aligned_cols=93 Identities=16% Similarity=0.130 Sum_probs=54.4
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcCCCCCceeeeeeeeecCcccceeeecccCCccCCCCCCCCC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGPP 263 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~iT~r~~~~~vHr~~~~~~g~~~C~~~~~~pp 263 (350)
+.+|||++.|.|..++...+.++++.....+..+.++. |
T Consensus 85 a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~---------------------------------~-------- 123 (196)
T cd02520 85 ARYDILVISDSDISVPPDYLRRMVAPLMDPGVGLVTCL---------------------------------C-------- 123 (196)
T ss_pred CCCCEEEEECCCceEChhHHHHHHHHhhCCCCCeEEee---------------------------------c--------
Confidence 67999999999998877777777665422222221111 0
Q ss_pred ccceEEEeccccChhHHHHhhhhhccCCcceehhhhhhhhhhcCCCCCcEEEEeeeeEEee
Q 018805 264 CTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQ 324 (350)
Q Consensus 264 cT~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLDf~w~~ca~g~~~~kiGVVDa~~V~H~ 324 (350)
++ ..+=+|+|++++.+=.+ . ....-.+=|+.+..-+.. .+.++..++...+.|.
T Consensus 124 ~~----g~~~~~r~~~~~~~ggf-~-~~~~~~~eD~~l~~rl~~-~G~~i~~~~~~~~~~~ 177 (196)
T cd02520 124 AF----GKSMALRREVLDAIGGF-E-AFADYLAEDYFLGKLIWR-LGYRVVLSPYVVMQPL 177 (196)
T ss_pred cc----CceeeeEHHHHHhccCh-H-HHhHHHHHHHHHHHHHHH-cCCeEEEcchheeccC
Confidence 00 12347889998866322 1 111224568777755542 4678988888544443
No 9
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=83.13 E-value=2.5 Score=36.98 Aligned_cols=129 Identities=13% Similarity=0.017 Sum_probs=68.9
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcCCCCCceeeeeeeee-cCcccceeeecccCCccCC-CCCCC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRA-RTKKFHRRVYDLRGSVKCT-NISEG 261 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~iT~r~-~~~~vHr~~~~~~g~~~C~-~~~~~ 261 (350)
+.+|||.+.|+|..++...++++++..++.+..+.+............. .... ....+ .......+. .....
T Consensus 80 a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~~ 153 (249)
T cd02525 80 SRGDIIIRVDAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQK-AIAVAQSSPL-----GSGGSAYRGGAVKIG 153 (249)
T ss_pred hCCCEEEEECCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHH-HHHHHhhchh-----ccCCccccccccccc
Confidence 4799999999999999888999998888878777665433211000000 0000 00000 000000000 00000
Q ss_pred -CCccceEEEeccccChhHHHHhhhhhccCCcceehhhhhhh-hhhcCCCCCcEEEEeeeeEEeeccCC
Q 018805 262 -PPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLG-YCAQGDRTKNVGIIDSEYVVHQGIQT 328 (350)
Q Consensus 262 -ppcT~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLDf~w~-~ca~g~~~~kiGVVDa~~V~H~~~pt 328 (350)
....++ | +|+|++|+.+= .+... ...|-|+.+. ++.+ .+.++..+....+.|....+
T Consensus 154 ~~~~~~~---~--~~~~~~~~~~g-~~~~~--~~~~eD~~l~~r~~~--~G~~~~~~~~~~~~~~~~~s 212 (249)
T cd02525 154 YVDTVHH---G--AYRREVFEKVG-GFDES--LVRNEDAELNYRLRK--AGYKIWLSPDIRVYYYPRST 212 (249)
T ss_pred ccccccc---c--eEEHHHHHHhC-CCCcc--cCccchhHHHHHHHH--cCcEEEEcCCeEEEEcCCCC
Confidence 001111 1 47899998763 23222 2346776665 3444 35689999999998885443
No 10
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=80.39 E-value=1 Score=38.52 Aligned_cols=40 Identities=15% Similarity=0.171 Sum_probs=31.9
Q ss_pred cCCccEEEEecCcccCCCCCHHHHHHHHHHh-CCccccCCc
Q 018805 183 VSNYDYIFLWDEDLGVENFDPRRYLEIVKSE-GFEISQPAL 222 (350)
Q Consensus 183 v~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~-gLeISQPAL 222 (350)
.+.+|||++.|+|..++.-.++++++.++++ +..+..+..
T Consensus 78 ~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~ 118 (201)
T cd04195 78 HCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGV 118 (201)
T ss_pred hcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccE
Confidence 3689999999999999988899999887654 566666543
No 11
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=79.92 E-value=0.92 Score=39.42 Aligned_cols=36 Identities=22% Similarity=0.150 Sum_probs=26.9
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHhCCcccc
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQ 219 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQ 219 (350)
+..|||++.|+|..++...+.++++.+.+.+..+..
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 112 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVI 112 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 566999999999888777777888776555555443
No 12
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=78.29 E-value=4.4 Score=36.16 Aligned_cols=176 Identities=18% Similarity=0.255 Sum_probs=92.2
Q ss_pred eecCCCCCCCCccCCCCCCccEEEEeccCcc--cccHHHHHhhcCCCCcEEEEEEeCCCCCccCCCCCCCceEEEEEecc
Q 018805 91 LRPLWSTSSSRKKFGVYSNRNLLAIPAGIKQ--KDNVDAIVRKFLPENFTVILFHYDGDVNAWRGLDWSNKAIHIAAQNQ 168 (350)
Q Consensus 91 ~r~lwg~p~~~~~~~~~~~k~Lv~~~VG~kq--k~~Vd~~v~kf~~~nFdv~LfhYDg~vd~W~d~~ws~~aiHv~a~kq 168 (350)
+|.-|+++..-. ..+.-+.+=+|... ...++..|++-....=||+++.+ .|.+..+.. +. .-.
T Consensus 6 IR~TW~~~~~~~-----~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~---~D~y~nlt~--K~-----~~~ 70 (195)
T PF01762_consen 6 IRETWGNQRNFK-----GVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDF---VDSYRNLTL--KT-----LAG 70 (195)
T ss_pred HHHHHhcccccC-----CCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeec---ccccchhhH--HH-----HHH
Confidence 466788765422 24456666678776 44567777664333447777654 344444311 11 012
Q ss_pred chhhhhccccCccccCCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcCCCCCceeeeeeeeecCcc--cceee
Q 018805 169 TKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKK--FHRRV 246 (350)
Q Consensus 169 tKww~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~iT~r~~~~~--vHr~~ 246 (350)
-+|-. +. ..+++||+..|||+-| ++.++++..++.-.+...+.+... .....-..|++.++ +....
T Consensus 71 ~~w~~-~~------c~~~~~v~k~DDD~~v---n~~~l~~~L~~~~~~~~~~~~~g~--~~~~~~~~r~~~~kw~v~~~~ 138 (195)
T PF01762_consen 71 LKWAS-KH------CPNAKYVLKVDDDVFV---NPDRLVSFLKSLKQDPSKNSIYGG--CIKNGPPIRDPSSKWYVSEEE 138 (195)
T ss_pred HHHHH-hh------CCchhheeecCcEEEE---ehHHhhhhhhhcccCccccccccc--cccCCccccccccCceeeeee
Confidence 22322 11 1358999999999988 556666666655233333332221 11121223333222 11111
Q ss_pred ecccCCccCCCCCCCCCccceEEEeccccChhHHHHhhhhhccCCcceehhh-hhhhhhhcC
Q 018805 247 YDLRGSVKCTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMD-MKLGYCAQG 307 (350)
Q Consensus 247 ~~~~g~~~C~~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLD-f~w~~ca~g 307 (350)
|. ...+-.|....+-++|+++.+.+....+. . .-+-+| -.+|.|++.
T Consensus 139 y~------------~~~yP~y~~G~~yvls~~~v~~i~~~~~~-~-~~~~~eDv~iGi~~~~ 186 (195)
T PF01762_consen 139 YP------------DDYYPPYCSGGGYVLSSDVVKRIYKASSH-T-PFFPLEDVFIGILAEK 186 (195)
T ss_pred cc------------cccCCCcCCCCeEEecHHHHHHHHHHhhc-C-CCCCchHHHHHHHHHH
Confidence 11 11233455677889999999988765543 2 333354 444888874
No 13
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=77.74 E-value=3.1 Score=34.76 Aligned_cols=37 Identities=8% Similarity=-0.079 Sum_probs=27.6
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHH-HhCCccccC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVK-SEGFEISQP 220 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr-~~gLeISQP 220 (350)
+..|||++.|+|..++...+.+.++... ..+..+...
T Consensus 74 a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g 111 (202)
T cd06433 74 ATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYG 111 (202)
T ss_pred cCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEe
Confidence 5689999999999999988888884443 334544443
No 14
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=76.10 E-value=14 Score=35.23 Aligned_cols=139 Identities=14% Similarity=-0.000 Sum_probs=82.8
Q ss_pred ccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcCCCCCceeeeeeeeecCcccceeeecccCCccCCCC----CCC
Q 018805 186 YDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNI----SEG 261 (350)
Q Consensus 186 YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~iT~r~~~~~vHr~~~~~~g~~~C~~~----~~~ 261 (350)
|+|++++++|..++...++++++.+++.+-...-+++-.+...-.+.-... ........ ......+.+. +..
T Consensus 85 ~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~ 160 (305)
T COG1216 85 DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRG-GESDGLTG---GWRASPLLEIAPDLSSY 160 (305)
T ss_pred CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheec-cccccccc---cceecccccccccccch
Confidence 459999999999999999999999999988777777654332212211111 11000000 0000111111 111
Q ss_pred CCccceEEEeccccChhHHHHhhhhhccCCcceehhhhhhhhhhcCCCCCcEEEEeeeeEEeeccCCCCC
Q 018805 262 PPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQGIQTLGG 331 (350)
Q Consensus 262 ppcT~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLDf~w~~ca~g~~~~kiGVVDa~~V~H~~~ptlG~ 331 (350)
+.+..++..-+-+++|++++.+=. +.. .-=.+.-|.-|.+-+. ..+.++..+=.-.|.|..--+.+.
T Consensus 161 ~~~~~~~~G~~~li~~~~~~~vG~-~de-~~F~y~eD~D~~~R~~-~~G~~i~~~p~a~i~H~~g~s~~~ 227 (305)
T COG1216 161 LEVVASLSGACLLIRREAFEKVGG-FDE-RFFIYYEDVDLCLRAR-KAGYKIYYVPDAIIYHKIGSSKGS 227 (305)
T ss_pred hhhhhhcceeeeEEcHHHHHHhCC-CCc-ccceeehHHHHHHHHH-HcCCeEEEeeccEEEEeccCCCCC
Confidence 223335666668899999998864 333 3456666766654444 234589999999999985544443
No 15
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=75.14 E-value=5 Score=35.20 Aligned_cols=62 Identities=11% Similarity=-0.071 Sum_probs=43.9
Q ss_pred eEEEEEeccchhhhhccccCccccCCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcCC
Q 018805 160 AIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDP 224 (350)
Q Consensus 160 aiHv~a~kqtKww~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~ 224 (350)
..++...++.|-.....-+ -.+.+|||++.|+|..++...++++++.+...+..+.++....
T Consensus 55 ~~v~~~~~~g~~~a~n~g~---~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~ 116 (235)
T cd06434 55 IFVITVPHPGKRRALAEGI---RHVTTDIVVLLDSDTVWPPNALPEMLKPFEDPKVGGVGTNQRI 116 (235)
T ss_pred EEEEecCCCChHHHHHHHH---HHhCCCEEEEECCCceeChhHHHHHHHhccCCCEeEEcCceEe
Confidence 3344444555543332212 1258999999999999999999999999987788888876544
No 16
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=73.24 E-value=4.6 Score=36.60 Aligned_cols=197 Identities=12% Similarity=0.123 Sum_probs=94.3
Q ss_pred CCccEEEEeccCcccccHHHHHh---h-cC-CCCcEEEEEEeCCCCCccCC-C-CC----CCceEEEEEe--ccchhhhh
Q 018805 108 SNRNLLAIPAGIKQKDNVDAIVR---K-FL-PENFTVILFHYDGDVNAWRG-L-DW----SNKAIHIAAQ--NQTKWWFA 174 (350)
Q Consensus 108 ~~k~Lv~~~VG~kqk~~Vd~~v~---k-f~-~~nFdv~LfhYDg~vd~W~d-~-~w----s~~aiHv~a~--kqtKww~a 174 (350)
.++.-|++|+= +....+...++ + .. ..++.|+++. ||+.|+=.+ + ++ ....+++... +.++-.-.
T Consensus 8 ~~~vsVvIp~y-ne~~~l~~~l~~l~~~~~~~~~~eiivvD-dgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~ 85 (243)
T PLN02726 8 AMKYSIIVPTY-NERLNIALIVYLIFKALQDVKDFEIIVVD-DGSPDGTQDVVKQLQKVYGEDRILLRPRPGKLGLGTAY 85 (243)
T ss_pred CceEEEEEccC-CchhhHHHHHHHHHHHhccCCCeEEEEEe-CCCCCCHHHHHHHHHHhcCCCcEEEEecCCCCCHHHHH
Confidence 45678888874 44444444332 2 11 1267766553 666553111 0 01 1112333322 23332111
Q ss_pred ccccCccccCCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcCC-CCCceeeeeeeeecCcccceeeecccCCc
Q 018805 175 KRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDP-NSTEIHHKFTIRARTKKFHRRVYDLRGSV 253 (350)
Q Consensus 175 kRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~-~s~~i~h~iT~r~~~~~vHr~~~~~~g~~ 253 (350)
+.-+ -.+..|||++.|.|...+...++++++.+.+.+.++.....-. +.+.-.|+...+........ +..
T Consensus 86 n~g~---~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~-~~~----- 156 (243)
T PLN02726 86 IHGL---KHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANV-LAQ----- 156 (243)
T ss_pred HHHH---HHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHH-HHH-----
Confidence 1111 1367899999999999988889999998877777765543221 11111122111100000000 000
Q ss_pred cCCCCCCCCCccceEEEeccccChhHHHHhhhhhccCCcceehhhhhhhhhhcCCCCCcEEEEeeeeEEee
Q 018805 254 KCTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQ 324 (350)
Q Consensus 254 ~C~~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLDf~w~~ca~g~~~~kiGVVDa~~V~H~ 324 (350)
.+. ..+.+. .=..+=+|+|++++.+...... ..-.+.+|+.+.... .+.++.-|.-.++-|.
T Consensus 157 ~~~----~~~~~d-~~g~~~~~rr~~~~~i~~~~~~-~~~~~~~el~~~~~~---~g~~i~~vp~~~~~r~ 218 (243)
T PLN02726 157 TLL----WPGVSD-LTGSFRLYKRSALEDLVSSVVS-KGYVFQMEIIVRASR---KGYRIEEVPITFVDRV 218 (243)
T ss_pred HHh----CCCCCc-CCCcccceeHHHHHHHHhhccC-CCcEEehHHHHHHHH---cCCcEEEeCcEEeCCC
Confidence 000 001110 0012336899999988654432 223335555443322 3467888887777765
No 17
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=68.26 E-value=4.3 Score=32.44 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=30.1
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA 221 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPA 221 (350)
+..|||++.|||..++.-.+.++++.+++.+-.+.-+.
T Consensus 77 a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~ 114 (169)
T PF00535_consen 77 AKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGS 114 (169)
T ss_dssp --SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEE
T ss_pred cceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEE
Confidence 67779999999999999999999999999776554443
No 18
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=67.33 E-value=4.8 Score=35.07 Aligned_cols=131 Identities=13% Similarity=0.004 Sum_probs=73.2
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHH-hCCccccCCcCCCCCceeeeeeeeecC--cccceeeecccCCccCCCCCC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKS-EGFEISQPALDPNSTEIHHKFTIRART--KKFHRRVYDLRGSVKCTNISE 260 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~-~gLeISQPALd~~s~~i~h~iT~r~~~--~~vHr~~~~~~g~~~C~~~~~ 260 (350)
+.+|||.+.|+|..++...+.++++.+.+ .++.+.++............+...... ..+.+.+... ...+
T Consensus 83 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----- 155 (234)
T cd06421 83 TTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPG--RDRW----- 155 (234)
T ss_pred CCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHH--Hhhc-----
Confidence 48999999999999999999999999987 677777764211000000001100000 0000000000 0000
Q ss_pred CCCccceEEEeccccChhHHHHhhhhhccCCcceehhhhhhhhhhcCCCCCcEEEEeeeeEEeeccCCC
Q 018805 261 GPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQGIQTL 329 (350)
Q Consensus 261 ~ppcT~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLDf~w~~ca~g~~~~kiGVVDa~~V~H~~~ptl 329 (350)
++ .++=.+.=+|+|++++.+-. +. ....+-|+.+..-+. ..+.+|..++...+.|...+++
T Consensus 156 --~~-~~~~g~~~~~r~~~~~~ig~-~~---~~~~~eD~~l~~r~~-~~g~~i~~~~~~~~~~~~~~~~ 216 (234)
T cd06421 156 --GA-AFCCGSGAVVRREALDEIGG-FP---TDSVTEDLATSLRLH-AKGWRSVYVPEPLAAGLAPETL 216 (234)
T ss_pred --CC-ceecCceeeEeHHHHHHhCC-CC---ccceeccHHHHHHHH-HcCceEEEecCccccccCCccH
Confidence 11 12223344789999998753 32 234577877774332 1356899889888888755544
No 19
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=66.81 E-value=4.3 Score=38.58 Aligned_cols=134 Identities=20% Similarity=0.195 Sum_probs=58.0
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcCCCCCceeeeeeeeecCcccceeeecccCCccCCCCCCCCC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGPP 263 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~iT~r~~~~~vHr~~~~~~g~~~C~~~~~~pp 263 (350)
..+|++++.|||..| +++++.++...|+- +||-.=... ...++++...+.. .++ ....
T Consensus 85 ~~~~Wf~~~DDDtyv---~~~~L~~~L~~~~~--~~~~yiG~~-~~~~~~~~~~~~~-~~~---------------~~~~ 142 (252)
T PF02434_consen 85 SDKDWFCFADDDTYV---NVENLRRLLSKYDP--SEPIYIGRP-SGDRPIEIIHRFN-PNK---------------SKDS 142 (252)
T ss_dssp HT-SEEEEEETTEEE----HHHHHHHHTTS-T--TS--EEE-E-E-----------------------------------
T ss_pred CCceEEEEEeCCcee---cHHHHHHHHhhCCC--ccCEEeeee-ccCccceeecccc-ccc---------------cCcC
Confidence 468999999999987 67777777776542 344321111 1112222210000 000 0001
Q ss_pred ccceEEE-eccccChhHHHHhhh------hhccCCcceehhhhhhhhhhcCCCCCcEEEEeeeeEEeeccCCCCCCCCCc
Q 018805 264 CTGFVEG-MAPVFSRSAWYCAWH------LIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQGIQTLGGQPPTR 336 (350)
Q Consensus 264 cT~FVEi-MAPVFSR~Awrcvw~------miqNdlvhGWGLDf~w~~ca~g~~~~kiGVVDa~~V~H~~~ptlG~~~~~~ 336 (350)
+-.|.-. -.-|+||.+.+.+-+ ..+.+....+.=|..+++|++. --+|-++++ .-.|.-.+.+....+..
T Consensus 143 ~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~--~lgv~lt~s-~~fhs~~~~l~~~~~~~ 219 (252)
T PF02434_consen 143 GFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIEN--LLGVPLTHS-PLFHSHLENLQDYNPET 219 (252)
T ss_dssp ---EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHH--TT---EEE--TT---SSS-GGG--TTT
T ss_pred ceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHh--cCCcceeec-hhhcccCcccccCCHHH
Confidence 1122221 124689999887732 2223333456789999999984 234555554 55677778877665555
Q ss_pred eeeeec
Q 018805 337 KVICIP 342 (350)
Q Consensus 337 ~~~~~~ 342 (350)
-.+.++
T Consensus 220 l~~q~~ 225 (252)
T PF02434_consen 220 LHRQVP 225 (252)
T ss_dssp GGG-SE
T ss_pred hccCCC
Confidence 444433
No 20
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=64.27 E-value=3.2 Score=36.27 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=27.1
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHhCCcccc
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQ 219 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQ 219 (350)
+..|||++.|.|...+...+.++++.+...+..+..
T Consensus 81 a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~ 116 (211)
T cd04188 81 ARGDYILFADADLATPFEELEKLEEALKTSGYDIAI 116 (211)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence 456999999999888887788877775555554444
No 21
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=61.10 E-value=11 Score=32.47 Aligned_cols=125 Identities=15% Similarity=0.082 Sum_probs=67.2
Q ss_pred EEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcCCCCCceeeeeeeeecCccc--ceeeecc-cCCccCCCCCCCCCc
Q 018805 188 YIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKKF--HRRVYDL-RGSVKCTNISEGPPC 264 (350)
Q Consensus 188 YIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~iT~r~~~~~v--Hr~~~~~-~g~~~C~~~~~~ppc 264 (350)
||.+.|+|..++.....+..+.++.-+..+.|+...... . ...++.-+..... |...... ...+.|
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 69 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRN-R-GSLLTRLQDFEYAISHGLSRLSQSSLGRP--------- 69 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecC-C-CChhheeehhhhhhhhhhhHHHHHhcCCC---------
Confidence 789999999999988999988888558889998876532 1 1122222211100 0000000 001111
Q ss_pred cceEEEeccccChhHHHHhhhhhccCCcceehhhhhhhhhhcCCCCCcEEEEeeeeEEeeccCC
Q 018805 265 TGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQGIQT 328 (350)
Q Consensus 265 T~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLDf~w~~ca~g~~~~kiGVVDa~~V~H~~~pt 328 (350)
.++=.-+=++++++++.+- .+. ..--.|=|..+..-+. ..+.+++.++...+.|...+|
T Consensus 70 -~~~~G~~~~~r~~~l~~vg-~~~--~~~~~~ED~~l~~~l~-~~G~~~~~~~~~~~~~~~p~t 128 (193)
T PF13632_consen 70 -LFLSGSGMLFRREALREVG-GFD--DPFSIGEDMDLGFRLR-RAGYRIVYVPDAIVYTEAPPT 128 (193)
T ss_pred -ccccCcceeeeHHHHHHhC-ccc--ccccccchHHHHHHHH-HCCCEEEEecccceeeeCCCC
Confidence 1111334468999999762 111 1122335655553222 135799999988554443333
No 22
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=60.25 E-value=5.2 Score=35.30 Aligned_cols=125 Identities=17% Similarity=0.086 Sum_probs=65.1
Q ss_pred CccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcCCCCCceeeeeeeeecCcccceeeecccCCccCCCCCCCCCc
Q 018805 185 NYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEGPPC 264 (350)
Q Consensus 185 ~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~iT~r~~~~~vHr~~~~~~g~~~C~~~~~~ppc 264 (350)
.||||++.|+|..++.-.+.++++.++..+..+.|+........ ..++.... .... ...+... . .+.. ...+
T Consensus 84 ~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~-~~~~-~~~~~~~-~-~~~~---~~~~ 155 (236)
T cd06435 84 DAEIIAVIDADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGE-ESLFKRMC-YAEY-KGFFDIG-M-VSRN---ERNA 155 (236)
T ss_pred CCCEEEEEcCCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCC-ccHHHHHH-hHHH-HHHHHHH-h-cccc---ccCc
Confidence 49999999999999999899999888766777766543221110 01111000 0000 0000000 0 0000 0011
Q ss_pred cceEEEeccccChhHHHHhhhhhccCCcceehhhhhhhhhhcCCCCCcEEEEeeeeEEe
Q 018805 265 TGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVH 323 (350)
Q Consensus 265 T~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLDf~w~~ca~g~~~~kiGVVDa~~V~H 323 (350)
.++-..+-+|+|++++.+= .+..+. -+=|+.+..-+. ..+.++..++...+.|
T Consensus 156 -~~~~g~~~~~rr~~~~~iG-gf~~~~---~~eD~dl~~r~~-~~G~~~~~~~~~~~~~ 208 (236)
T cd06435 156 -IIQHGTMCLIRRSALDDVG-GWDEWC---ITEDSELGLRMH-EAGYIGVYVAQSYGHG 208 (236)
T ss_pred -eEEecceEEEEHHHHHHhC-CCCCcc---ccchHHHHHHHH-HCCcEEEEcchhhccC
Confidence 1222333479999999873 232222 245777765443 2467888888755433
No 23
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=56.63 E-value=13 Score=35.36 Aligned_cols=95 Identities=12% Similarity=0.202 Sum_probs=53.0
Q ss_pred cCcccccHHHHHhhcCC-CCcEEEEEEeCCCCCccCCCCCCCceEEEEEeccchhhhhccccCccccCCccEEEEecCcc
Q 018805 118 GIKQKDNVDAIVRKFLP-ENFTVILFHYDGDVNAWRGLDWSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDL 196 (350)
Q Consensus 118 G~kqk~~Vd~~v~kf~~-~nFdv~LfhYDg~vd~W~d~~ws~~aiHv~a~kqtKww~akRfLHPdiv~~YDYIflwDDDL 196 (350)
..+......++|+.... ..-.=++..+.+...--....|.+..+-|....+++=-.-.||+..+ --.=|.|+..|||+
T Consensus 8 ~~~R~~~L~~~l~~l~~~~~l~~IvVvWn~~~~~P~~~~~~~~~vpV~~~~~~~nsLnnRF~p~~-~i~T~AVl~~DDDv 86 (247)
T PF09258_consen 8 SYKRSDLLKRLLRHLASSPSLRKIVVVWNNPNPPPPSSKWPSTGVPVRVVRSSRNSLNNRFLPDP-EIETDAVLSLDDDV 86 (247)
T ss_dssp -SS-HHHHHHHHHHHTTSTTEEEEEEEEE-TS--THHHHHT---S-EEEEEESSHHGGGGGS--T-T--SSEEEEEETTE
T ss_pred cccchHHHHHHHHHHHcCCCCCeEEEEeCCCCCCCcccccCCCCceEEEEecCCccHHhcCcCcc-ccCcceEEEecCCc
Confidence 44445556666666533 33444455555421111123444444555556666666778886432 35579999999999
Q ss_pred cCCCCCHHHHHHHHHHh
Q 018805 197 GVENFDPRRYLEIVKSE 213 (350)
Q Consensus 197 ~vd~f~i~ryf~Ivr~~ 213 (350)
.++..+++.-|+.-+++
T Consensus 87 ~~~~~~l~faF~~W~~~ 103 (247)
T PF09258_consen 87 MLSCDELEFAFQVWREF 103 (247)
T ss_dssp EE-HHHHHHHHHHHCCS
T ss_pred ccCHHHHHHHHHHHHhC
Confidence 99999999989888744
No 24
>PRK11204 N-glycosyltransferase; Provisional
Probab=49.63 E-value=43 Score=33.00 Aligned_cols=199 Identities=17% Similarity=0.145 Sum_probs=95.4
Q ss_pred CCccEEEEeccCcccccHHHHHhhcC---CCCcEEEEEEeCCCCCccCC-CC-CCCc--eEEEEE--eccchhhhhcccc
Q 018805 108 SNRNLLAIPAGIKQKDNVDAIVRKFL---PENFTVILFHYDGDVNAWRG-LD-WSNK--AIHIAA--QNQTKWWFAKRFL 178 (350)
Q Consensus 108 ~~k~Lv~~~VG~kqk~~Vd~~v~kf~---~~nFdv~LfhYDg~vd~W~d-~~-ws~~--aiHv~a--~kqtKww~akRfL 178 (350)
.++.-|.+|+=... +.+.+.++... -.+++|++.. ||..|+=.+ ++ +..+ .+++.. .+.+|=...+.-+
T Consensus 53 ~p~vsViIp~yne~-~~i~~~l~sl~~q~yp~~eiiVvd-D~s~d~t~~~l~~~~~~~~~v~~i~~~~n~Gka~aln~g~ 130 (420)
T PRK11204 53 YPGVSILVPCYNEG-ENVEETISHLLALRYPNYEVIAIN-DGSSDNTGEILDRLAAQIPRLRVIHLAENQGKANALNTGA 130 (420)
T ss_pred CCCEEEEEecCCCH-HHHHHHHHHHHhCCCCCeEEEEEE-CCCCccHHHHHHHHHHhCCcEEEEEcCCCCCHHHHHHHHH
Confidence 34567777775543 44555444321 2367887665 454443211 10 1111 133332 3555533333322
Q ss_pred CccccCCccEEEEecCcccCCCCCHHHHHHHHHH-hCCcccc--CCcCCCCCceeeeeeeeecCcc--cceeeecccCCc
Q 018805 179 HPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKS-EGFEISQ--PALDPNSTEIHHKFTIRARTKK--FHRRVYDLRGSV 253 (350)
Q Consensus 179 HPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~-~gLeISQ--PALd~~s~~i~h~iT~r~~~~~--vHr~~~~~~g~~ 253 (350)
-.++||||.+.|.|..++...++++.+.+++ .+..+.| |......+...+..+.. -... ..++....-|
T Consensus 131 ---~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 204 (420)
T PRK11204 131 ---AAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLGRIQVGE-FSSIIGLIKRAQRVYG-- 204 (420)
T ss_pred ---HHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHHHHHHHH-HHHhhhHHHHHHHHhC--
Confidence 1268999999999999998888888888853 3444444 22221111100000000 0000 0000000000
Q ss_pred cCCCCCCCCCccceEEEeccccChhHHHHhhhhhccCCcceehhhhhhhhhhcCCCCCcEEEEeeeeEEeeccCCC
Q 018805 254 KCTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQGIQTL 329 (350)
Q Consensus 254 ~C~~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLDf~w~~ca~g~~~~kiGVVDa~~V~H~~~ptl 329 (350)
....+-.++=+|+|++++.+= -+..+.. +=|+.+..-+. ..+.++..+....+.|....++
T Consensus 205 ----------~~~~~~G~~~~~rr~~l~~vg-g~~~~~~---~ED~~l~~rl~-~~G~~i~~~p~~~~~~~~p~t~ 265 (420)
T PRK11204 205 ----------RVFTVSGVITAFRKSALHEVG-YWSTDMI---TEDIDISWKLQ-LRGWDIRYEPRALCWILMPETL 265 (420)
T ss_pred ----------CceEecceeeeeeHHHHHHhC-CCCCCcc---cchHHHHHHHH-HcCCeEEeccccEEEeECcccH
Confidence 001122334478999998762 2222222 34666654443 2457888888887777755544
No 25
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=48.36 E-value=18 Score=35.47 Aligned_cols=190 Identities=16% Similarity=0.197 Sum_probs=95.4
Q ss_pred CCccEEEEeccCcccccHHHHHhhc----C-------CCCcEEEEEEeCCCCCccCC-C-CCCC------ceEEEE--Ee
Q 018805 108 SNRNLLAIPAGIKQKDNVDAIVRKF----L-------PENFTVILFHYDGDVNAWRG-L-DWSN------KAIHIA--AQ 166 (350)
Q Consensus 108 ~~k~Lv~~~VG~kqk~~Vd~~v~kf----~-------~~nFdv~LfhYDg~vd~W~d-~-~ws~------~aiHv~--a~ 166 (350)
.++--|++||=. ....+.++++.- . ..++.|++. =||+.|+=.+ + ++.+ ..+++. .+
T Consensus 69 ~~~isVVIP~yN-e~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVV-DDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~~ 146 (333)
T PTZ00260 69 DVDLSIVIPAYN-EEDRLPKMLKETIKYLESRSRKDPKFKYEIIIV-NDGSKDKTLKVAKDFWRQNINPNIDIRLLSLLR 146 (333)
T ss_pred CeEEEEEEeeCC-CHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEE-eCCCCCchHHHHHHHHHhcCCCCCcEEEEEcCC
Confidence 445667777644 444455554422 1 125666544 5777654221 1 1111 124443 23
Q ss_pred ccchhhhhccccCccccCCccEEEEecCcccCCCCCHHHHHHHHHH---hCCccccCCcCCC-CC--ceeeeeeeeecCc
Q 018805 167 NQTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKS---EGFEISQPALDPN-ST--EIHHKFTIRARTK 240 (350)
Q Consensus 167 kqtKww~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~---~gLeISQPALd~~-s~--~i~h~iT~r~~~~ 240 (350)
+++|-.-.+.=+ -.+..|||++.|.|...+..++.++++.+++ .+.++..-+.... .+ ....+...+--..
T Consensus 147 N~G~~~A~~~Gi---~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~~~~ 223 (333)
T PTZ00260 147 NKGKGGAVRIGM---LASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNILMY 223 (333)
T ss_pred CCChHHHHHHHH---HHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHHHHH
Confidence 566654433322 1267899999999999999999999998875 4555444332211 01 0011111110011
Q ss_pred ccceeeecccCCccCCCCCCCCCccceEEEecc--ccChhHHHHhhhhhccCCcceehhhhhhhhhhcCCCCCcEEEEee
Q 018805 241 KFHRRVYDLRGSVKCTNISEGPPCTGFVEGMAP--VFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDS 318 (350)
Q Consensus 241 ~vHr~~~~~~g~~~C~~~~~~ppcT~FVEiMAP--VFSR~Awrcvw~miqNdlvhGWGLDf~w~~ca~g~~~~kiGVVDa 318 (350)
.+|.. .+. -|. ++.-+.++. +|+|++++.+.+.+ ...+|+.|.-+...+.- .+.+|.-|--
T Consensus 224 ~~~~l-~~~----~~~--------~~i~D~~~Gfk~~~r~~~~~i~~~~---~~~~~~fd~Ell~~a~~-~g~~I~EvPv 286 (333)
T PTZ00260 224 GFHFI-VNT----ICG--------TNLKDTQCGFKLFTRETARIIFPSL---HLERWAFDIEIVMIAQK-LNLPIAEVPV 286 (333)
T ss_pred HHHHH-HHH----HcC--------CCcccCCCCeEEEeHHHHHHHhhhc---cccCccchHHHHHHHHH-cCCCEEEEce
Confidence 11210 000 010 123333444 68999999775432 34688888777766652 3344554433
Q ss_pred e
Q 018805 319 E 319 (350)
Q Consensus 319 ~ 319 (350)
.
T Consensus 287 ~ 287 (333)
T PTZ00260 287 N 287 (333)
T ss_pred e
Confidence 3
No 26
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=47.63 E-value=66 Score=31.43 Aligned_cols=105 Identities=16% Similarity=0.270 Sum_probs=60.6
Q ss_pred CCccEEEEeccCcccccHHHHHhhc------CCCCcEEEEEEeCCCCCccCCC--CC----CCceEEE-EEeccchhhhh
Q 018805 108 SNRNLLAIPAGIKQKDNVDAIVRKF------LPENFTVILFHYDGDVNAWRGL--DW----SNKAIHI-AAQNQTKWWFA 174 (350)
Q Consensus 108 ~~k~Lv~~~VG~kqk~~Vd~~v~kf------~~~nFdv~LfhYDg~vd~W~d~--~w----s~~aiHv-~a~kqtKww~a 174 (350)
.++.-|++|| +++..++.+.++.- ...+|.|++. =||+.|+-.+. ++ ..+.+++ ..++..|..-.
T Consensus 5 ~~~vSVVIP~-yNE~~~i~~~l~~l~~~~~~~~~~~EIIvV-DDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~G~~~A~ 82 (325)
T PRK10714 5 IKKVSVVIPV-YNEQESLPELIRRTTAACESLGKEYEILLI-DDGSSDNSAEMLVEAAQAPDSHIVAILLNRNYGQHSAI 82 (325)
T ss_pred CCeEEEEEcc-cCchhhHHHHHHHHHHHHHhCCCCEEEEEE-eCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHH
Confidence 4556677776 34444454444321 1246776544 57777764332 11 1123322 23454554433
Q ss_pred ccccCccccCCccEEEEecCcccCCCCCHHHHHHHHHHhCCccc
Q 018805 175 KRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEIS 218 (350)
Q Consensus 175 kRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeIS 218 (350)
+.=+ -.+.+|||++.|.|...+...+.++++.++ .|.++.
T Consensus 83 ~~G~---~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 83 MAGF---SHVTGDLIITLDADLQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred HHHH---HhCCCCEEEEECCCCCCCHHHHHHHHHHHH-hhCCEE
Confidence 3312 125789999999999999999999999885 455543
No 27
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=46.15 E-value=12 Score=33.13 Aligned_cols=132 Identities=14% Similarity=0.094 Sum_probs=68.3
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcCCCCCceeeeeee-eecCcccceeeecccCCccCCCCCCCC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHKFTI-RARTKKFHRRVYDLRGSVKCTNISEGP 262 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~iT~-r~~~~~vHr~~~~~~g~~~C~~~~~~p 262 (350)
+.+|||++.|.|..++...++++..+....+..+.|+-+...... ...++. +.-....| +.....+. ...
T Consensus 86 a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~-----~~~ 156 (232)
T cd06437 86 AKGEYVAIFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINAN-YSLLTRVQAMSLDYH---FTIEQVAR-----SST 156 (232)
T ss_pred CCCCEEEEEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCC-CchhhHhhhhhHHhh---hhHhHhhH-----hhc
Confidence 589999999999999988888877776555555555543210000 000100 00000000 00000000 000
Q ss_pred CccceEEEeccccChhHHHHhhhhhccCCcceehhhhhhhhhhcCCCCCcEEEEeeeeEEeeccCCC
Q 018805 263 PCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQGIQTL 329 (350)
Q Consensus 263 pcT~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLDf~w~~ca~g~~~~kiGVVDa~~V~H~~~ptl 329 (350)
.+...+=.++-+|+|++|+.+-. +.. ...+=|+.+...+. .++.++..++...+.|....++
T Consensus 157 ~~~~~~~g~~~~~rr~~~~~vgg-~~~---~~~~ED~~l~~rl~-~~G~~~~~~~~~~v~~~~~~~~ 218 (232)
T cd06437 157 GLFFNFNGTAGVWRKECIEDAGG-WNH---DTLTEDLDLSYRAQ-LKGWKFVYLDDVVVPAELPASM 218 (232)
T ss_pred CCeEEeccchhhhhHHHHHHhCC-CCC---CcchhhHHHHHHHH-HCCCeEEEeccceeeeeCCcCH
Confidence 01011111223699999988743 322 22457777664443 2467999999888887754443
No 28
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=44.88 E-value=20 Score=27.64 Aligned_cols=22 Identities=23% Similarity=0.098 Sum_probs=19.2
Q ss_pred CccEEEEecCcccCCCCCHHHH
Q 018805 185 NYDYIFLWDEDLGVENFDPRRY 206 (350)
Q Consensus 185 ~YDYIflwDDDL~vd~f~i~ry 206 (350)
.+||+++.|+|..++...+.++
T Consensus 77 ~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 77 RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred cCCEEEEECCCCccCccHHHHH
Confidence 7999999999999888777776
No 29
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=44.74 E-value=14 Score=29.21 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=26.6
Q ss_pred CccEEEEecCcccCCCCCHHHH-HHHHHHhCCccccCCc
Q 018805 185 NYDYIFLWDEDLGVENFDPRRY-LEIVKSEGFEISQPAL 222 (350)
Q Consensus 185 ~YDYIflwDDDL~vd~f~i~ry-f~Ivr~~gLeISQPAL 222 (350)
.+|||++.|+|..++...+.++ ..+.+..+..+..+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~ 116 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRV 116 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeE
Confidence 8999999999999887777777 3434444444544444
No 30
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=43.93 E-value=28 Score=38.24 Aligned_cols=97 Identities=18% Similarity=0.257 Sum_probs=67.0
Q ss_pred ccCcccccHHHHHhhcCCCCcEEEEEEeCCC-------------------------C-CccCCCCCCCceEEEEEeccch
Q 018805 117 AGIKQKDNVDAIVRKFLPENFTVILFHYDGD-------------------------V-NAWRGLDWSNKAIHIAAQNQTK 170 (350)
Q Consensus 117 VG~kqk~~Vd~~v~kf~~~nFdv~LfhYDg~-------------------------v-d~W~d~~ws~~aiHv~a~kqtK 170 (350)
+|...|..-.++=...+.++|+|+++.|.-. + +.-+|+.|-+-.+-|....-.|
T Consensus 631 ~gGsGkEF~~aLGGN~pREQFTvVmLTYERe~VLm~sLeRL~gLPYLnKvvVVWNspk~P~ddl~WPdigvPv~viR~~~ 710 (907)
T KOG2264|consen 631 AGGSGKEFSKALGGNRPREQFTVVMLTYEREAVLMGSLERLHGLPYLNKVVVVWNSPKDPPDDLTWPDIGVPVEVIRVAE 710 (907)
T ss_pred CCCchHHHHHHhcCCCccceEEEEEEEehHHHHHHHHHHHhhCCcccceEEEEeCCCCCChhcccCcCCCCceEEEEccc
Confidence 3455555544444456679999999999832 2 3345688876666666656666
Q ss_pred hhhhccccCccccCCccEEEEecCcccCCCCCHHHHHHHHHHhC
Q 018805 171 WWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEG 214 (350)
Q Consensus 171 ww~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~g 214 (350)
=-+-.|||..|.+ +=+.|.-.|||..+.|..|-==|.+=|++.
T Consensus 711 NsLNNRFlPwd~I-ETEAvLS~DDDahLrhdEI~fgFRVWRE~R 753 (907)
T KOG2264|consen 711 NSLNNRFLPWDRI-ETEAVLSLDDDAHLRHDEIIFGFRVWRENR 753 (907)
T ss_pred ccccccccCchhh-hheeeeecccchhhhhhheeeeeehhhhcc
Confidence 5678999988866 469999999999998887754455555443
No 31
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=42.86 E-value=20 Score=30.57 Aligned_cols=38 Identities=8% Similarity=0.130 Sum_probs=30.4
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHH-HHhCCccccCC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIV-KSEGFEISQPA 221 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Iv-r~~gLeISQPA 221 (350)
+.+|||++.|+|..++...++++++.+ +..+..+..+.
T Consensus 82 a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~ 120 (202)
T cd04184 82 ATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSD 120 (202)
T ss_pred hcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEcc
Confidence 578999999999999888889999888 55566665443
No 32
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=41.86 E-value=21 Score=30.79 Aligned_cols=38 Identities=16% Similarity=0.152 Sum_probs=29.2
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA 221 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPA 221 (350)
+.+|||++.|+|..++.-.++++++.+.+.+-...+.+
T Consensus 81 ~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~ 118 (229)
T cd04192 81 AKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGP 118 (229)
T ss_pred hcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeee
Confidence 57999999999999988888888886666554444433
No 33
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=41.73 E-value=18 Score=32.26 Aligned_cols=123 Identities=21% Similarity=0.163 Sum_probs=71.0
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHH--hCCccccCCcCCCCCceeeeeeeeecCcccceeeecccCCccCCCCCCC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKS--EGFEISQPALDPNSTEIHHKFTIRARTKKFHRRVYDLRGSVKCTNISEG 261 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~--~gLeISQPALd~~s~~i~h~iT~r~~~~~vHr~~~~~~g~~~C~~~~~~ 261 (350)
+.||||++.|+|+.++.-.+.++..-... .|+-=+.|-..+..+.... +..-...+|-.++..
T Consensus 30 a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~---l~~~~~~~~~~~~~a------------ 94 (175)
T PF13506_consen 30 AKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSR---LEAAFFNFLPGVLQA------------ 94 (175)
T ss_pred CCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHH---HHHHHHhHHHHHHHH------------
Confidence 89999999999999998888887765554 3332222332222221110 000000122111110
Q ss_pred CCccceEEEeccccChhHHHHhhhhhccCCcceehhhhhhhhhhcCCCCCcEEEEeeeeEEeec
Q 018805 262 PPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQG 325 (350)
Q Consensus 262 ppcT~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLDf~w~~ca~g~~~~kiGVVDa~~V~H~~ 325 (350)
..-++|+=.|+=.|+|++++..= -+ +.+.+.-.=||.++..+.. .+.+|...... |.|+.
T Consensus 95 ~~~~~~~~G~~m~~rr~~L~~~G-G~-~~l~~~ladD~~l~~~~~~-~G~~v~~~~~~-v~~~~ 154 (175)
T PF13506_consen 95 LGGAPFAWGGSMAFRREALEEIG-GF-EALADYLADDYALGRRLRA-RGYRVVLSPYP-VVQTS 154 (175)
T ss_pred hcCCCceecceeeeEHHHHHHcc-cH-HHHhhhhhHHHHHHHHHHH-CCCeEEEcchh-eeecc
Confidence 11246777888889999999752 22 2244566789999987763 57788777643 34443
No 34
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=39.41 E-value=38 Score=32.01 Aligned_cols=95 Identities=16% Similarity=0.171 Sum_probs=52.3
Q ss_pred EEEeccCcccc-----cHHHHHh---hc-CCCCcEEEEEEeCCCCCccC----CCCCCCceEEE-EEeccch-hhhhccc
Q 018805 113 LAIPAGIKQKD-----NVDAIVR---KF-LPENFTVILFHYDGDVNAWR----GLDWSNKAIHI-AAQNQTK-WWFAKRF 177 (350)
Q Consensus 113 v~~~VG~kqk~-----~Vd~~v~---kf-~~~nFdv~LfhYDg~vd~W~----d~~ws~~aiHv-~a~kqtK-ww~akRf 177 (350)
|++||..++.. .+...+. ++ ...++.|++..++.. +++. .+-=....+++ ....+.. |-.++..
T Consensus 2 iIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~eiIvvd~~s~-~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~ar 80 (281)
T PF10111_consen 2 IIIPVRNRSERPDILERLRNCLESLSQFQSDPDFEIIVVDDGSS-DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAKAR 80 (281)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCc-hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHHHH
Confidence 67888888743 2322233 32 246888888877765 3331 11001123312 2121221 2222221
Q ss_pred cCccccCCccEEEEecCcccCCCCCHHHHHH
Q 018805 178 LHPDVVSNYDYIFLWDEDLGVENFDPRRYLE 208 (350)
Q Consensus 178 LHPdiv~~YDYIflwDDDL~vd~f~i~ryf~ 208 (350)
=--=-.+.-|||+++|-|+.++...++++++
T Consensus 81 N~g~~~A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 81 NIGAKYARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred HHHHHHcCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 0011237899999999999999888888888
No 35
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=38.48 E-value=26 Score=29.89 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=31.2
Q ss_pred ccChhHHHHhhhhhccCCcceehhhhhhhhhhcCCCCCcEEEEeeeeEEee
Q 018805 274 VFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGDRTKNVGIIDSEYVVHQ 324 (350)
Q Consensus 274 VFSR~Awrcvw~miqNdlvhGWGLDf~w~~ca~g~~~~kiGVVDa~~V~H~ 324 (350)
+|+|++++.+-... . ...|+=|+.+..++.. ..++..++...+.|+
T Consensus 158 ~~r~~~~~~~~~~~-~--~~~~~~D~~~~~~~~~--~~~~~~~~~~~~~~r 203 (214)
T cd04196 158 AFNRELLELALPFP-D--ADVIMHDWWLALLASA--FGKVVFLDEPLILYR 203 (214)
T ss_pred eEEHHHHHhhcccc-c--cccccchHHHHHHHHH--cCceEEcchhHHHHh
Confidence 69999999876432 2 2267778666655542 457999988877665
No 36
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=38.36 E-value=19 Score=32.11 Aligned_cols=40 Identities=8% Similarity=-0.007 Sum_probs=31.9
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALD 223 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd 223 (350)
+..|||++.|+|...+...+.++++.++..+..+.++...
T Consensus 108 a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~ 147 (251)
T cd06439 108 ATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELV 147 (251)
T ss_pred cCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEE
Confidence 4569999999999999888888888887666666666544
No 37
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=37.71 E-value=25 Score=30.40 Aligned_cols=41 Identities=12% Similarity=0.121 Sum_probs=32.1
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcCC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDP 224 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~ 224 (350)
+.+|||.+.|+|..++...+++++......+..++.+....
T Consensus 71 a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 111 (221)
T cd02522 71 ARGDWLLFLHADTRLPPDWDAAIIETLRADGAVAGAFRLRF 111 (221)
T ss_pred ccCCEEEEEcCCCCCChhHHHHHHHHhhcCCcEEEEEEeee
Confidence 45899999999999998888888777777766666655443
No 38
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=36.46 E-value=34 Score=30.77 Aligned_cols=38 Identities=8% Similarity=0.169 Sum_probs=29.7
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHh--CCccccCC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSE--GFEISQPA 221 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~--gLeISQPA 221 (350)
+.+|||++.|.|..++.-.+.+.++.+.+. ++-+.|+-
T Consensus 83 a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 122 (241)
T cd06427 83 ARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAP 122 (241)
T ss_pred cCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCc
Confidence 688999999999999998888888877643 44444543
No 39
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=35.68 E-value=35 Score=33.84 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=29.7
Q ss_pred ccEEEEecCcccCCCCCHHHHHHHHHHhCCccc
Q 018805 186 YDYIFLWDEDLGVENFDPRRYLEIVKSEGFEIS 218 (350)
Q Consensus 186 YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeIS 218 (350)
+|||++.|.|..++...++++++.+++.+..+.
T Consensus 134 gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~v 166 (384)
T TIGR03469 134 ADYLLLTDADIAHGPDNLARLVARARAEGLDLV 166 (384)
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHhCCCCEE
Confidence 999999999999999999999999988776654
No 40
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=35.17 E-value=86 Score=31.39 Aligned_cols=185 Identities=18% Similarity=0.227 Sum_probs=97.1
Q ss_pred CccccCCCcce----ecCCCCCCCCccCCCCCCccEEEEeccCcccc-cHHHHHhhcCCCCcEEEEEEeCCCCCccCCCC
Q 018805 81 GIVQARSDLEL----RPLWSTSSSRKKFGVYSNRNLLAIPAGIKQKD-NVDAIVRKFLPENFTVILFHYDGDVNAWRGLD 155 (350)
Q Consensus 81 giv~~~sd~~~----r~lwg~p~~~~~~~~~~~k~Lv~~~VG~kqk~-~Vd~~v~kf~~~nFdv~LfhYDg~vd~W~d~~ 155 (350)
+|-....++.. |+=||+++. . ...+--+.+=+|..... .+++.|.+-....-||+.-.|.... ..+.
T Consensus 100 ~V~S~~~~farR~aiR~TW~~~~~-v----~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ygDIi~~df~Dty---~nlt 171 (349)
T KOG2287|consen 100 LVKSAPDNFARRNAIRKTWGNENN-V----RGGRVRVLFLVGLPSNEDKLNKLLADEARLYGDIIQVDFEDTY---FNLT 171 (349)
T ss_pred EEecCCCCHHHHHHHHHHhcCccc-c----CCCcEEEEEEecCCCcHHHHHHHHHHHHHHhCCEEEEecccch---hchH
Confidence 44556666654 567998775 1 12222222223332221 4578887766677899988776542 2221
Q ss_pred CCCceEEEEEeccchhhhhccccCccccCCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCCcCCCCCceeee-ee
Q 018805 156 WSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPALDPNSTEIHHK-FT 234 (350)
Q Consensus 156 ws~~aiHv~a~kqtKww~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPALd~~s~~i~h~-iT 234 (350)
. +.++ .-.|-..+. .+++||.=.|||+-+ +++.+++..++.. +|+=+.=.|.+... -.
T Consensus 172 l--Ktl~-----~l~w~~~~c-------p~akfi~K~DDDvfv---~~~~L~~~L~~~~----~~~~~~~~G~v~~~~~p 230 (349)
T KOG2287|consen 172 L--KTLA-----ILLWGVSKC-------PDAKFILKIDDDVFV---NPDNLLEYLDKLN----DPSSDLYYGRVIQNAPP 230 (349)
T ss_pred H--HHHH-----HHHHHHhcC-------CcceEEEeccCceEE---cHHHHHHHHhccC----CCCcceEEEeecccCCC
Confidence 1 1111 111222111 379999999999987 4556666666655 22211111222111 11
Q ss_pred eeecCcccceeeecccCCccCCCCCCCCCcc---ceEEEeccccChhHHHHhhhhhccCCcceehhhhhhhhhhcCC
Q 018805 235 IRARTKKFHRRVYDLRGSVKCTNISEGPPCT---GFVEGMAPVFSRSAWYCAWHLIQNDLVHGWGMDMKLGYCAQGD 308 (350)
Q Consensus 235 ~r~~~~~vHr~~~~~~g~~~C~~~~~~ppcT---~FVEiMAPVFSR~Awrcvw~miqNdlvhGWGLDf~w~~ca~g~ 308 (350)
.|.+. +.|= -+-..-||+ .|+=.|+-|+|+++-+.+...- .....-|-=|-.++-|++.+
T Consensus 231 ~R~~~------------~Kwy-Vp~~~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s-~~~~~~~iEDV~~g~~l~~~ 293 (349)
T KOG2287|consen 231 IRDKT------------SKWY-VPESEYPCSVYPPYASGPGYVISGDAARRLLKAS-KHLKFFPIEDVFVGGCLAED 293 (349)
T ss_pred CCCCC------------CCCc-cCHHHCCCCCCCCcCCCceeEecHHHHHHHHHHh-cCCCccchHHHHHHHHHHHh
Confidence 11111 1110 000112333 3455788899999999888743 44666676677788898753
No 41
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=32.72 E-value=1.3e+02 Score=30.38 Aligned_cols=99 Identities=14% Similarity=0.099 Sum_probs=58.4
Q ss_pred CccEEEEeccCcccccHHHHHhhcC---CCCcEEEEEEeCCCCCccCCC--CCCC--ceEEEEE--eccchhhhhccccC
Q 018805 109 NRNLLAIPAGIKQKDNVDAIVRKFL---PENFTVILFHYDGDVNAWRGL--DWSN--KAIHIAA--QNQTKWWFAKRFLH 179 (350)
Q Consensus 109 ~k~Lv~~~VG~kqk~~Vd~~v~kf~---~~nFdv~LfhYDg~vd~W~d~--~ws~--~aiHv~a--~kqtKww~akRfLH 179 (350)
++.-|.+|+=.... .+.+.++... -.+++|++.. ||..|+..+. ++.. ..+++.. .+++|=.-.+.-+
T Consensus 75 p~vsViIP~yNE~~-~i~~~l~sll~q~yp~~eIivVd-Dgs~D~t~~~~~~~~~~~~~v~vv~~~~n~Gka~AlN~gl- 151 (444)
T PRK14583 75 PLVSILVPCFNEGL-NARETIHAALAQTYTNIEVIAIN-DGSSDDTAQVLDALLAEDPRLRVIHLAHNQGKAIALRMGA- 151 (444)
T ss_pred CcEEEEEEeCCCHH-HHHHHHHHHHcCCCCCeEEEEEE-CCCCccHHHHHHHHHHhCCCEEEEEeCCCCCHHHHHHHHH-
Confidence 45677777765543 3444444321 2478877664 7776655331 1110 1233333 4666644433322
Q ss_pred ccccCCccEEEEecCcccCCCCCHHHHHHHHHH
Q 018805 180 PDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKS 212 (350)
Q Consensus 180 Pdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~ 212 (350)
..+.||||.+.|.|-.++...+.++.+.+.+
T Consensus 152 --~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~ 182 (444)
T PRK14583 152 --AAARSEYLVCIDGDALLDKNAVPYLVAPLIA 182 (444)
T ss_pred --HhCCCCEEEEECCCCCcCHHHHHHHHHHHHh
Confidence 2368999999999999988888888776643
No 42
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=31.93 E-value=32 Score=28.77 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=20.6
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHH
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIV 210 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Iv 210 (350)
+.+|||+++|+|..++...+.++++.+
T Consensus 78 a~g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 78 AKGDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred hcCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 678999999999988765566655543
No 43
>PF09828 Chrome_Resist: Chromate resistance exported protein; InterPro: IPR018634 Members of this family of bacterial proteins are involved in the reduction of chromate accumulation and are essential for chromate resistance [, ].
Probab=29.04 E-value=37 Score=30.48 Aligned_cols=49 Identities=24% Similarity=0.555 Sum_probs=34.6
Q ss_pred hhhhhccccCccccCCccEEEEecCc-------ccCCCCCHH-----------HHHHHHHHhCCccccCCcCC
Q 018805 170 KWWFAKRFLHPDVVSNYDYIFLWDED-------LGVENFDPR-----------RYLEIVKSEGFEISQPALDP 224 (350)
Q Consensus 170 Kww~akRfLHPdiv~~YDYIflwDDD-------L~vd~f~i~-----------ryf~Ivr~~gLeISQPALd~ 224 (350)
-=|+++||+-|+ =+++|+.++. .+...||+. .|=-++++||| .+|||..
T Consensus 14 c~WLIrRFIDp~----A~F~fv~~~~v~~~~~~~~A~pFD~~ga~~tH~g~~cTFe~ll~~f~L--~dpaL~~ 80 (135)
T PF09828_consen 14 CPWLIRRFIDPE----AEFLFVPPPEVLDVACPFDAIPFDIPGAEFTHRGDRCTFEVLLASFGL--DDPALAR 80 (135)
T ss_pred CHHHHHHhcCCC----ceEEEeCchhhccccccCCCCcccCCCCeeeeeCCcccHHHHHHHhCC--CCHHHHH
Confidence 359999999777 3577888776 122234432 36668899999 8999976
No 44
>PRK10073 putative glycosyl transferase; Provisional
Probab=27.68 E-value=55 Score=32.00 Aligned_cols=107 Identities=13% Similarity=0.159 Sum_probs=60.3
Q ss_pred CCccEEEEeccCcccccHHHHHhhcC---CCCcEEEEEEeCCCCCccCC-C-CCC--CceEEEEE-eccchhhhhccccC
Q 018805 108 SNRNLLAIPAGIKQKDNVDAIVRKFL---PENFTVILFHYDGDVNAWRG-L-DWS--NKAIHIAA-QNQTKWWFAKRFLH 179 (350)
Q Consensus 108 ~~k~Lv~~~VG~kqk~~Vd~~v~kf~---~~nFdv~LfhYDg~vd~W~d-~-~ws--~~aiHv~a-~kqtKww~akRfLH 179 (350)
.++.-|++||=... ..+.+.++-.. ..+|.|++.. ||.+|+=.+ + +|. ...+++.. .+++. -.+...
T Consensus 5 ~p~vSVIIP~yN~~-~~L~~~l~Sl~~Qt~~~~EIIiVd-DgStD~t~~i~~~~~~~~~~i~vi~~~n~G~-~~arN~-- 79 (328)
T PRK10073 5 TPKLSIIIPLYNAG-KDFRAFMESLIAQTWTALEIIIVN-DGSTDNSVEIAKHYAENYPHVRLLHQANAGV-SVARNT-- 79 (328)
T ss_pred CCeEEEEEeccCCH-HHHHHHHHHHHhCCCCCeEEEEEe-CCCCccHHHHHHHHHhhCCCEEEEECCCCCh-HHHHHH--
Confidence 35567888884443 34444443221 2578877665 777653111 1 111 12233322 23322 111111
Q ss_pred ccccCCccEEEEecCcccCCCCCHHHHHHHHHHhCCcccc
Q 018805 180 PDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQ 219 (350)
Q Consensus 180 Pdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQ 219 (350)
-=-.+.-|||++.|.|-.++...++++++.+++.+.++..
T Consensus 80 gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 80 GLAVATGKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred HHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 0013678999999999999888889999998888877754
No 45
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=27.40 E-value=31 Score=27.20 Aligned_cols=25 Identities=32% Similarity=0.743 Sum_probs=18.8
Q ss_pred ccccCCccEEEEecCcccCCCCCHHHHHHHHHHhC
Q 018805 180 PDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEG 214 (350)
Q Consensus 180 Pdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~g 214 (350)
..+..+|||||++|.+ .++-.|+.|
T Consensus 13 ~~i~~~~~~iFt~D~~----------~~~~~~~~G 37 (79)
T PF12996_consen 13 YSIANSYDYIFTFDRS----------FVEEYRNLG 37 (79)
T ss_pred hhhCCCCCEEEEECHH----------HHHHHHHcC
Confidence 4678999999999974 455556666
No 46
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=27.13 E-value=67 Score=28.18 Aligned_cols=31 Identities=19% Similarity=0.067 Sum_probs=26.6
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHhC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEG 214 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~g 214 (350)
+.+|||++.|+|...+...+.+.+..+.+..
T Consensus 83 a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 83 SSGRYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred cCCCEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 6899999999999999988888887776654
No 47
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.69 E-value=33 Score=37.27 Aligned_cols=69 Identities=20% Similarity=0.240 Sum_probs=42.6
Q ss_pred EEEEEEeCCCCCc-cCCCCCCCceEEEEEeccchhhhhccccCccccCCccEEEEecCcccCCCCCHHHHHHH
Q 018805 138 TVILFHYDGDVNA-WRGLDWSNKAIHIAAQNQTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEI 209 (350)
Q Consensus 138 dv~LfhYDg~vd~-W~d~~ws~~aiHv~a~kqtKww~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~I 209 (350)
-|.+|-|-..+++ ...+ ..+-|.-.+.|-..-..-++||--+.+.|||++|--||..|++|-.-|++.-
T Consensus 52 rv~~F~~~~~i~~~~a~~---~~vs~~d~r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~h 121 (681)
T KOG3708|consen 52 RVHLFADSSRIDNDLAQL---TNVSPYDLRGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDH 121 (681)
T ss_pred eeEEeeccccccccHhhc---cccCccccCccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhh
Confidence 4677777766653 3321 1122222222322333444566668899999999999999998877777654
No 48
>PF12621 DUF3779: Phosphate metabolism protein ; InterPro: IPR022257 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02714 from PFAM. There are two completely conserved residues (W and D) that may be functionally important. This family is likely to be involved in phosphate metabolism however there is little accompanying literature to confirm this.
Probab=25.54 E-value=38 Score=28.01 Aligned_cols=43 Identities=26% Similarity=0.468 Sum_probs=34.8
Q ss_pred ccccCccccCCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCC
Q 018805 175 KRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA 221 (350)
Q Consensus 175 kRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPA 221 (350)
..|+||.+.++--.|||+-|++|+.... ++-.++.|+.||.-+
T Consensus 34 ~ay~~Pa~~~~~P~lWIP~D~~GvS~~e----i~~~~~~~v~~Sd~g 76 (95)
T PF12621_consen 34 HAYLHPAVSAPQPILWIPRDPLGVSRQE----IEETRKVGVPISDEG 76 (95)
T ss_pred hccCCHhHcCCCCeEEeecCCCCCCHHH----HHHhhcCCeEEECCC
Confidence 4588999999999999999999997654 445667777777655
No 49
>KOG1555 consensus 26S proteasome regulatory complex, subunit RPN11 [Posttranslational modification, protein turnover, chaperones]
Probab=24.52 E-value=38 Score=34.30 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=33.4
Q ss_pred CCCCCCCCCccceEEEeccccChhHHHHhhhhhccCCccee
Q 018805 255 CTNISEGPPCTGFVEGMAPVFSRSAWYCAWHLIQNDLVHGW 295 (350)
Q Consensus 255 C~~~~~~ppcT~FVEiMAPVFSR~Awrcvw~miqNdlvhGW 295 (350)
|+-+..+.-.|.|||-+-|||++.+.+-+--..+..++-||
T Consensus 80 ~am~~sg~~is~~~e~~d~V~q~q~~~~l~~tGrp~~VVGW 120 (316)
T KOG1555|consen 80 FAMPQSGTGISKFVEAVDPVFQTQMMDLLKQTGRPELVVGW 120 (316)
T ss_pred eccccccceecccchhccHHHHHHHHHHHHhcCCcceEEee
Confidence 34444555678899999999999999988877777889999
No 50
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=24.50 E-value=77 Score=27.13 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=25.2
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHH
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKS 212 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~ 212 (350)
+.||||++.|.|..++...+.++.+.+.+
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 47999999999999998888888887754
No 51
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=24.05 E-value=1.6e+02 Score=29.48 Aligned_cols=102 Identities=17% Similarity=0.281 Sum_probs=63.6
Q ss_pred cEEEEeccCcccccHHHHHh---hcCCCCcEEEEEEeCCC-------CCccCCC--CCCCceEEEEEeccc---hhhh--
Q 018805 111 NLLAIPAGIKQKDNVDAIVR---KFLPENFTVILFHYDGD-------VNAWRGL--DWSNKAIHIAAQNQT---KWWF-- 173 (350)
Q Consensus 111 ~Lv~~~VG~kqk~~Vd~~v~---kf~~~nFdv~LfhYDg~-------vd~W~d~--~ws~~aiHv~a~kqt---Kww~-- 173 (350)
.|.+++||.+- ..+-.+++ .+....+...+|.-|.. .++|... ++.+..+|-..-..+ .|-.
T Consensus 2 ~~~vv~~g~~~-~~~~~~lkSil~~n~~~l~Fhi~~d~~~~~~~~~~l~~~~~~~~~~i~~~i~~I~~P~~~~~~ws~l~ 80 (304)
T cd06430 2 HLAVVACGERL-EETLTMLKSAIVFSQKPLRFHIFAEDQLKQSFKEKLDDWPELIDRKFNYTLHPITFPSGNAAEWKKLF 80 (304)
T ss_pred EEEEEEcCCcH-HHHHHHHHHHHHhCCCCEEEEEEECCccCHHHHHHHHHHHHhccceeeeEEEEEecCccchhhhhhcc
Confidence 47889999983 33333333 23456899999985422 2223211 222223443322222 4533
Q ss_pred ----hccccCccccCCccEEEEecCcccCCCCCHHHHHHHHHHhC
Q 018805 174 ----AKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVKSEG 214 (350)
Q Consensus 174 ----akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~g 214 (350)
..|++=|+++.++|-|.-.|-|+.+ .-+++.++++.+..+
T Consensus 81 ~~~~y~RL~ip~lLp~~dkvLYLD~Dii~-~~dI~eL~~~~~df~ 124 (304)
T cd06430 81 KPCAAQRLFLPSLLPDVDSLLYVDTDILF-LRPVEEIWSFLKKFN 124 (304)
T ss_pred cHHHHHHHHHHHHhhhhceEEEeccceee-cCCHHHHHHHHhhcC
Confidence 3467789999999999999999998 668999999866553
No 52
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=23.87 E-value=55 Score=32.24 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=29.4
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHhCCcccc
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQ 219 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQ 219 (350)
+.+|||.+.|.|..++..-+.+..+-++..+..+.+
T Consensus 125 a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~ 160 (373)
T TIGR03472 125 ARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVT 160 (373)
T ss_pred ccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEe
Confidence 789999999999999888888888777655665544
No 53
>PLN02867 Probable galacturonosyltransferase
Probab=22.72 E-value=34 Score=36.83 Aligned_cols=34 Identities=24% Similarity=0.455 Sum_probs=29.7
Q ss_pred ccccCccccCCccEEEEecCcccCCCCCHHHHHHH
Q 018805 175 KRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEI 209 (350)
Q Consensus 175 kRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~I 209 (350)
.||+=||++.++|-|...|+|+-|.. |+..++++
T Consensus 334 lRflIPeLLP~LdKVLYLD~DVVVqg-DLseLwdi 367 (535)
T PLN02867 334 LRIYIPELFPDLNKIVFLDDDVVVQH-DLSSLWEL 367 (535)
T ss_pred HHHHHHHHhhccCeEEEecCCEEEcC-chHHHHhC
Confidence 45566999999999999999999977 88888876
No 54
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=22.46 E-value=86 Score=33.50 Aligned_cols=92 Identities=18% Similarity=0.191 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHhhhccchhhhhhhhhhhccCCCCcCCccccCCCCCCCCCCCccccCCCcceecCCCCCCCCccCCCC
Q 018805 28 LQFMAIMCTVMLFVVYRTTYYQYKQTEMEAKFSPFDISKGSRFSSGRLKSLPRGIVQARSDLELRPLWSTSSSRKKFGVY 107 (350)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LP~giv~~~sd~~~r~lwg~p~~~~~~~~~ 107 (350)
+.|.+.+|+.+++.+|...+ ..+ +-..|-...+.....-+++|.|||++-+..+.-+...- ++.+.++.+
T Consensus 13 ilf~~~~~~~v~l~~~~~~~----~p~--~~~~~~~~~~t~~~~~~sa~~l~p~~~~~~~~~~~~~p---~~~~~~~~~- 82 (546)
T KOG2431|consen 13 ILFILAFLLFVLLLLYINPA----NPA--ELPNPQSGQKTKRGGQRSAENLPPDLPQQSATDEQEAP---KEGDPNRTV- 82 (546)
T ss_pred HHHHHHHHHHHHHHHhcCCC----Chh--hcCCccccchhhhhcccCcccCCCCcchhhchhhccCC---ccCCCCCcc-
Confidence 45666677666555554422 111 11111111222234567888999988877776665543 122221100
Q ss_pred CCccEEEEe--ccCcccccHHHHHhhc
Q 018805 108 SNRNLLAIP--AGIKQKDNVDAIVRKF 132 (350)
Q Consensus 108 ~~k~Lv~~~--VG~kqk~~Vd~~v~kf 132 (350)
-..--| .+.+|++.|++....|
T Consensus 83 ---i~~~~Ptg~nerq~avv~aF~haW 106 (546)
T KOG2431|consen 83 ---ISFRGPTGLNERQKAVVDAFLHAW 106 (546)
T ss_pred ---eeecCCCchhHHHHHHHHHHHHHH
Confidence 001113 3778888877766654
No 55
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=22.05 E-value=2.3e+02 Score=32.28 Aligned_cols=109 Identities=11% Similarity=0.132 Sum_probs=67.8
Q ss_pred CCccEEEEeccCcccccHHHHHh-----hcCCCCcEEEEEEeCCCCCccCCCCCCCceEEEEEe---ccchhhhhccccC
Q 018805 108 SNRNLLAIPAGIKQKDNVDAIVR-----KFLPENFTVILFHYDGDVNAWRGLDWSNKAIHIAAQ---NQTKWWFAKRFLH 179 (350)
Q Consensus 108 ~~k~Lv~~~VG~kqk~~Vd~~v~-----kf~~~nFdv~LfhYDg~vd~W~d~~ws~~aiHv~a~---kqtKww~akRfLH 179 (350)
.++.=|.+|+=....+.+.+.+. .++.++|+|++.. ||+.|+..++.= +-.+++..+ ++.|=-.++..+.
T Consensus 259 ~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVD-DgS~D~t~~la~-~~~v~yI~R~~n~~gKAGnLN~aL~ 336 (852)
T PRK11498 259 WPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILD-DGGREEFRQFAQ-EVGVKYIARPTHEHAKAGNINNALK 336 (852)
T ss_pred CCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEe-CCCChHHHHHHH-HCCcEEEEeCCCCcchHHHHHHHHH
Confidence 46677888874433344443332 4666789999886 888777765321 113455444 2334333344442
Q ss_pred ccccCCccEEEEecCcccCCCCCHHHHHHHH-HHhCCccccCC
Q 018805 180 PDVVSNYDYIFLWDEDLGVENFDPRRYLEIV-KSEGFEISQPA 221 (350)
Q Consensus 180 Pdiv~~YDYIflwDDDL~vd~f~i~ryf~Iv-r~~gLeISQPA 221 (350)
.+.+|||.+.|-|-.++...+++.+..+ +.-++.+.|..
T Consensus 337 ---~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp 376 (852)
T PRK11498 337 ---YAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTP 376 (852)
T ss_pred ---hCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcc
Confidence 2589999999999998877777777664 44567777753
No 56
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=21.94 E-value=59 Score=27.14 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=28.9
Q ss_pred CCccEEEEecCcccCCCCCHHHHHHHHHHhCCccccCC
Q 018805 184 SNYDYIFLWDEDLGVENFDPRRYLEIVKSEGFEISQPA 221 (350)
Q Consensus 184 ~~YDYIflwDDDL~vd~f~i~ryf~Ivr~~gLeISQPA 221 (350)
+.-|||.+.|+|..++...++++++.+.+.+..+.+..
T Consensus 78 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~ 115 (185)
T cd04179 78 ARGDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVIGS 115 (185)
T ss_pred hcCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEE
Confidence 34499999999999888778888887666666555444
No 57
>PHA03165 hypothetical protein; Provisional
Probab=21.04 E-value=63 Score=24.66 Aligned_cols=32 Identities=25% Similarity=0.491 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhhccchhhhhhhhhhhccCCCCcCCcccc
Q 018805 30 FMAIMCTVMLFVVYRTTYYQYKQTEMEAKFSPFDISKGSRF 70 (350)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (350)
...+++.+++|++|..+- ...+||++.-.+++
T Consensus 23 yilvvafvlaflvysdfl---------snlspfgeilsspc 54 (57)
T PHA03165 23 YILVVAFVLAFLVYSDFL---------SNLSPFGEILSSPC 54 (57)
T ss_pred ehhHHHHHHHHHHHHHHH---------hccCchhhhhcCcc
Confidence 456778889999999887 56677776555443
No 58
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=21.00 E-value=66 Score=30.50 Aligned_cols=51 Identities=22% Similarity=0.137 Sum_probs=36.1
Q ss_pred cchhhhhccccCccccCCccEEEEecCcccCCCCCHHHHHHHHH-HhCCcccc
Q 018805 168 QTKWWFAKRFLHPDVVSNYDYIFLWDEDLGVENFDPRRYLEIVK-SEGFEISQ 219 (350)
Q Consensus 168 qtKww~akRfLHPdiv~~YDYIflwDDDL~vd~f~i~ryf~Ivr-~~gLeISQ 219 (350)
+.|=-.+..++. ..-+.||||.+.|-|..++...+.+.+..+. .-++-+.|
T Consensus 79 g~Kag~l~~~~~-~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq 130 (254)
T cd04191 79 GRKAGNIADFCR-RWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQ 130 (254)
T ss_pred CccHHHHHHHHH-HhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 333344444552 2227899999999999999999999998885 44555555
Done!