BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018806
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
++A+ + DG + S+SY+ IWD A G L T I +S +K+SP G Y AA
Sbjct: 174 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 232
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
D T LW+ T+T +E + + F VTG W G L + +L
Sbjct: 233 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 292
Query: 323 I 323
I
Sbjct: 293 I 293
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSILKW 262
+ F + + + ++++ + P+G +LAS+S + IW G G G+S + W
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAW 95
Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTL 320
S + +A D T +W+ ++ + S +V ++P+ +I+ +F S+ +
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 321 GSIHFASKPPSLDAHLLPV 339
+ +L AH PV
Sbjct: 156 WDVKTGKCLKTLPAHSDPV 174
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 211 NGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDY 268
+ + ++A+ + DG + S+SY+ IWD A G L T I +S +K+SP G Y
Sbjct: 144 HSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 202
Query: 269 FFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSL 318
AA D T LW+ T+T +E + + F VTG W G L + +L
Sbjct: 203 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 262
Query: 319 TLGSI 323
I
Sbjct: 263 QTKEI 267
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSILKW 262
+ F + + + ++++ + P+G +LAS+S + IW G G G+S + W
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAW 69
Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTL 320
S + +A D T +W+ ++ + S +V ++P+ +I+ +F S+ +
Sbjct: 70 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 321 GSIHFASKPPSLDAHLLPV 339
+ +L AH PV
Sbjct: 130 WDVKTGKCLKTLPAHSDPV 148
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
++A+ + DG + S+SY+ IWD A G L T I +S +K+SP G Y AA
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
D T LW+ T+T +E + + F VTG W G L + +L
Sbjct: 214 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Query: 323 I 323
I
Sbjct: 274 I 274
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSILKW 262
+ F + + + ++++ + P+G +LAS+S + IW G G G+S + W
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTL 320
S + +A D T +W+ ++ + S +V ++P+ +I+ +F S+ +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 321 GSIHFASKPPSLDAHLLPV 339
+ +L AH PV
Sbjct: 137 WDVKTGKCLKTLPAHSDPV 155
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
++A+ + DG + S+SY+ IWD A G L T I +S +K+SP G Y AA
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
D T LW+ T+T +E + + F VTG W G L + +L
Sbjct: 214 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Query: 323 I 323
I
Sbjct: 274 I 274
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSILKW 262
+ F + + + ++++ + P+G +LAS+S + IW G G G+S + W
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTL 320
S + +A D T +W+ ++ + S +V ++P+ +I+ +F S+ +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 321 GSIHFASKPPSLDAHLLPV 339
+ +L AH PV
Sbjct: 137 WDVKTGKCLKTLPAHSDPV 155
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
++A+ + DG + S+SY+ IWD A G L T I +S +K+SP G Y AA
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
D T LW+ T+T +E + + F VTG W G L + +L
Sbjct: 211 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Query: 323 I 323
I
Sbjct: 271 I 271
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSILKW 262
+ F + + + ++++ + P+G +LAS+S + IW G G G+S + W
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTL 320
S + +A D T +W+ ++ + S +V ++P+ +I+ +F S+ +
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 321 GSIHFASKPPSLDAHLLPV 339
+ +L AH PV
Sbjct: 134 WDVKTGKCLKTLPAHSDPV 152
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 211 NGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDY 268
+ + ++A+ + DG + S+SY+ IWD A G L T I +S +K+SP G Y
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 212
Query: 269 FFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSL 318
AA D T LW+ T+T +E + + F VTG W G L + +L
Sbjct: 213 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 319 TLGSI 323
I
Sbjct: 273 QTKEI 277
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSILKW 262
+ F + + + ++++ + P+G +LAS+S + IW G G G+S + W
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTL 320
S + +A D T +W+ ++ + S +V ++P+ +I+ +F S+ +
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 321 GSIHFASKPPSLDAHLLPV 339
+ +L AH PV
Sbjct: 140 WDVKTGKCLKTLPAHSDPV 158
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
++A+ + DG + S+SY+ IWD A G L T I +S +K+SP G Y AA
Sbjct: 152 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
D T LW+ T+T +E + + F VTG W G L + +L
Sbjct: 211 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270
Query: 323 I 323
I
Sbjct: 271 I 271
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSILKW 262
+ F + + + ++++ + P+G +LAS+S + IW G G G+S + W
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTL 320
S + +A D T +W+ ++ + S +V ++P+ +I+ +F S+ +
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 321 GSIHFASKPPSLDAHLLPV 339
+ +L AH PV
Sbjct: 134 WDVKTGKCLKTLPAHSDPV 152
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
++A+ + DG + S+SY+ IWD A G L T I +S +K+SP G Y AA
Sbjct: 153 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 211
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
D T LW+ T+T +E + + F VTG W G L + +L
Sbjct: 212 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 271
Query: 323 I 323
I
Sbjct: 272 I 272
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSILKW 262
+ F + + + ++++ + P+G +LAS+S + IW G G G+S + W
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAW 74
Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTL 320
S + +A D T +W+ ++ + S +V ++P+ +I+ +F S+ +
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 321 GSIHFASKPPSLDAHLLPV 339
+ +L AH PV
Sbjct: 135 WDVKTGKCLKTLPAHSDPV 153
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
++A+ + DG + S+SY+ IWD A G L T I +S +K+SP G Y AA
Sbjct: 169 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 227
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
D T LW+ T+T +E + + F VTG W G L + +L
Sbjct: 228 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 287
Query: 323 I 323
I
Sbjct: 288 I 288
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSILKW 262
+ F + + + ++++ + P+G +LAS+S + IW G G G+S + W
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAW 90
Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTL 320
S + +A D T +W+ ++ + S +V ++P+ +I+ +F S+ +
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 321 GSIHFASKPPSLDAHLLPV 339
+ +L AH PV
Sbjct: 151 WDVKTGKCLKTLPAHSDPV 169
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 211 NGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDY 268
+ + ++A+ + DG + S+SY+ IWD A G L T I +S +K+SP G Y
Sbjct: 147 HSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 205
Query: 269 FFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSL 318
AA D T LW+ T+T +E + + F VTG W G L + +L
Sbjct: 206 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265
Query: 319 TLGSI 323
I
Sbjct: 266 QTKEI 270
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSILKW 262
+ F + + + ++++ + P+G +LAS+S + IW G G G+S + W
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAW 72
Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTL 320
S + +A D T +W+ ++ + S +V ++P+ +I+ +F S+ +
Sbjct: 73 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 321 GSIHFASKPPSLDAHLLPV 339
+ +L AH PV
Sbjct: 133 WDVKTGKCLKTLPAHSDPV 151
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
++A+ + DG + S+SY+ IWD A G L T I +S +K+SP G Y AA
Sbjct: 176 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 234
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
D T LW+ T+T +E + + F VTG W G L + +L
Sbjct: 235 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 294
Query: 323 I 323
I
Sbjct: 295 I 295
Score = 34.7 bits (78), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSILKW 262
+ F + + + ++++ + P+G +LAS+S + IW G G G+S + W
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAW 97
Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTL 320
S + +A D T +W+ ++ + S +V ++P+ +I+ +F S+ +
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 321 GSIHFASKPPSLDAHLLPV 339
+ +L AH PV
Sbjct: 158 WDVKTGKCLKTLPAHSDPV 176
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
++A+ + DG + S+SY+ IWD A G L T I +S +K+SP G Y AA
Sbjct: 157 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 215
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
D T LW+ T+T +E + + F VTG W G L + +L
Sbjct: 216 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 275
Query: 323 I 323
I
Sbjct: 276 I 276
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSILKW 262
+ F + + + ++++ + P+G +LAS+S + IW G G G+S + W
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAW 78
Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTL 320
S + +A D T +W+ ++ + S +V ++P+ +I+ +F S+ +
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 321 GSIHFASKPPSLDAHLLPV 339
+ +L AH PV
Sbjct: 139 WDVKTGKCLKTLPAHSDPV 157
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
++A+ + DG + S+SY+ IWD A G L T I +S +K+SP G Y AA
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 213
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
D T LW+ T+T +E + + F VTG W G L + +L
Sbjct: 214 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 273
Query: 323 I 323
I
Sbjct: 274 I 274
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSILKW 262
+ F + + + ++++ + P+G +LA++S + IW G G G+S + W
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLAASSADKL-IKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTL 320
S + +A D T +W+ ++ + S +V ++P+ +I+ +F S+ +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 321 GSIHFASKPPSLDAHLLPV 339
+ +L AH PV
Sbjct: 137 WDVKTGKCLKTLPAHSDPV 155
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 13/121 (10%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDYFFAA 272
++A+ + DG + S+SY+ IWD A G L T I +S +K+SP G Y AA
Sbjct: 158 VSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 216
Query: 273 KFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSLTLGS 322
D T LW+ T+T +E + + F VTG W G L + +L
Sbjct: 217 TLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKE 276
Query: 323 I 323
I
Sbjct: 277 I 277
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSILKW 262
+ F + + + ++++ + P+G +LAS+S + IW G G G+S + W
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTL 320
S + +A D T +W+ ++ + S +V ++P+ +I+ +F S+ +
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 321 GSIHFASKPPSLDAHLLPV 339
+ +L AH PV
Sbjct: 140 WDVKTGKCLKTLPAHSDPV 158
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 13/125 (10%)
Query: 211 NGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDY 268
+ + ++A+ + DG + S+SY+ IWD A G L T I +S +K+SP G Y
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 212
Query: 269 FFAAKFDGTFYLWE------TNTWT---SEPWSSTSGF-VTGATWDPEGRMILLAFAGSL 318
AA D T LW+ T+T +E + + F VTG W G L + +L
Sbjct: 213 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
Query: 319 TLGSI 323
I
Sbjct: 273 QTKEI 277
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 204 VDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSILKW 262
+ F + + + ++++ + P+G +LAS+S + IW G G G+S + W
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 263 SPTGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTL 320
S + +A D T +W+ ++ + S +V ++P+ +I+ +F S+ +
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 321 GSIHFASKPPSLDAHLLPV 339
+ +L AH PV
Sbjct: 140 WDVKTGKCLKTLPAHSDPV 158
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 211 NGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDY 268
+ + ++A+ + DG + S+SY+ IWD A G L T I +S +K+SP G Y
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 209
Query: 269 FFAAKFDGTFYLWE 282
AA D T LW+
Sbjct: 210 ILAATLDNTLKLWD 223
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
Query: 206 FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSILKWSP 264
F + + + ++++ + P+G +LAS+S + IW G G G+S + WS
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 265 TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTLGS 322
+ +A D T +W+ ++ + S +V ++P+ +I+ +F S+ +
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 323 IHFASKPPSLDAHLLPV 339
+ +L AH PV
Sbjct: 139 VKTGMCLKTLPAHSDPV 155
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 211 NGEQITALSWGPDGRYLASASYESSSFTIWDVAQG--LGTPIRRGFGGLSILKWSPTGDY 268
+ + ++A+ + DG + S+SY+ IWD A G L T I +S +K+SP G Y
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLC-RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 209
Query: 269 FFAAKFDGTFYLWE 282
AA D LW+
Sbjct: 210 ILAATLDNDLKLWD 223
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
Query: 206 FLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG-GLSILKWSP 264
F + + + ++++ + P+G +LAS+S + IW G G G+S + WS
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKL-IKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 265 TGDYFFAAKFDGTFYLWETNTWTS-EPWSSTSGFVTGATWDPEGRMILL-AFAGSLTLGS 322
+ +A D T +W+ ++ + S +V ++P+ +I+ +F S+ +
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 323 IHFASKPPSLDAHLLPV 339
+ +L AH PV
Sbjct: 139 VKTGMCLKTLPAHSDPV 155
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 198 GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQG---LGTPIRRGF 254
G W L + + ++W P G YLASAS+++++ IW Q T +
Sbjct: 47 GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT-CIWKKNQDDFECVTTLEGHE 105
Query: 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETN 284
+ + W+P+G+ D + ++WE +
Sbjct: 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 22/107 (20%)
Query: 218 LSWGPDGRYLASASYESSSFTIWD-----------VAQGLGTPIRRGFGGLSILKWSPTG 266
L+W P G LAS + IW +++G +R+ + WSP G
Sbjct: 22 LAWNPAGTLLASCGGDRR-IRIWGTEGDSWICKSVLSEGHQRTVRK-------VAWSPCG 73
Query: 267 DYFFAAKFDGTFYLWETNTWTSEPWSSTSGF---VTGATWDPEGRMI 310
+Y +A FD T +W+ N E ++ G V W P G ++
Sbjct: 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLL 120
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 57/155 (36%), Gaps = 31/155 (20%)
Query: 138 ILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGP 197
+L+ QR V+ + W P G S CIW + F
Sbjct: 55 VLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW-----------KKNQDDF-------- 95
Query: 198 GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ----GLGTPIRRG 253
V L E + +++W P G LA+ S + S + +W+V + + +
Sbjct: 96 ----ECVTTLEGHENE-VKSVAWAPSGNLLATCSRDKSVW-VWEVDEEDEYECVSVLNSH 149
Query: 254 FGGLSILKWSPTGDYFFAAKFDGTFYLW--ETNTW 286
+ + W P+ + +A +D T L+ E + W
Sbjct: 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW 184
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 101 DLQGVSWHQHKHIVAFISGSTQVIVRDYEDSEGKDACILTSDSQRD-VKVLEWRPNGGRS 159
D++ V WH + ++A S S V+ Y + E C T + V L + P+G R
Sbjct: 152 DVKHVVWHPSQELLA--SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRL 209
Query: 160 LSVGCKGGICIWAPSYPGNAASV 182
S + IW PGN V
Sbjct: 210 ASCSDDRTVRIWRQYLPGNEQGV 232
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAAK 273
I ++ + PDG++LA+ + E IWD+ I +G + L + P+GD +
Sbjct: 126 IRSVCFSPDGKFLATGA-EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184
Query: 274 FDGTFYLWETNT-WTSEPWSSTSGFVTGATWDPEGRMILLAFAGSL 318
D T +W+ T S S G T A +G+ I AGSL
Sbjct: 185 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA---AGSL 227
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 19/152 (12%)
Query: 198 GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP---IRRGF 254
G +W V L+ NG Q+T + W PD + + + +++ +W + P I R
Sbjct: 39 GNKWVQVHELKEHNG-QVTGIDWAPDSNRIVTCGTDRNAY-VWTLKGRTWKPTLVILRIN 96
Query: 255 GGLSILKWSPTGDYFFA---AKFDGTFYLWETNTW-----TSEPWSSTSGFVTGATWDPE 306
++W+P F ++ Y + N W +P ST V W P
Sbjct: 97 RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST---VLSLDWHPN 153
Query: 307 GRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 338
+LLA AGS F++ ++ P
Sbjct: 154 S--VLLA-AGSCDFKCRIFSAYIKEVEERPAP 182
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 19/152 (12%)
Query: 198 GTRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTP---IRRGF 254
G +W V L+ NG Q+T + W PD + + + +++ +W + P I R
Sbjct: 39 GNKWVQVHELKEHNG-QVTGVDWAPDSNRIVTCGTDRNAY-VWTLKGRTWKPTLVILRIN 96
Query: 255 GGLSILKWSPTGDYFFA---AKFDGTFYLWETNTW-----TSEPWSSTSGFVTGATWDPE 306
++W+P F ++ Y + N W +P ST V W P
Sbjct: 97 RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST---VLSLDWHPN 153
Query: 307 GRMILLAFAGSLTLGSIHFASKPPSLDAHLLP 338
+LLA AGS F++ ++ P
Sbjct: 154 S--VLLA-AGSCDFKCRIFSAYIKEVEERPAP 182
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 205 DFLRSQNG--EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFG---GLSI 259
DF R+ G + + +S+ G+ LAS S + + +WD QG IR G +S
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMT-IKLWDF-QGFEC-IRTMHGHDHNVSS 197
Query: 260 LKWSPTGDYFFAAKFDGTFYLWETNT 285
+ P GD+ +A D T +WE T
Sbjct: 198 VSIMPNGDHIVSASRDKTIKMWEVQT 223
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 207 LRSQNGEQITALS------WG----PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG 256
L ++NG+ + L+ WG PDG+ +ASAS + + +W+ L +
Sbjct: 165 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS-DDKTVKLWNRNGQLLQTLTGHSSS 223
Query: 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLA 313
+ + +SP G +A D T LW N + + S V G + P+G+ I A
Sbjct: 224 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASA 280
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF 274
+ +++ PDG+ +ASAS + + +W+ L + + + +SP G +A
Sbjct: 470 VRGVAFSPDGQTIASAS-DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 528
Query: 275 DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLA 313
D T LW N + + S V G + P+G+ I A
Sbjct: 529 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 567
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF 274
+ +++ PDG+ +ASAS + + +W+ L + + + +SP G +A
Sbjct: 19 VRGVAFSPDGQTIASAS-DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 77
Query: 275 DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLA 313
D T LW N + + S V G + P+G+ I A
Sbjct: 78 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 116
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 207 LRSQNGEQITALS------WG----PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG 256
L ++NG+ + L+ WG PDG+ +ASAS + + +W+ L +
Sbjct: 124 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS-DDKTVKLWNRNGQLLQTLTGHSSS 182
Query: 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLA 313
+ + +SP G +A D T LW N + + S V G + P+G+ I A
Sbjct: 183 VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 239
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSILKWSPTGDYFFAAKF 274
+ +++ PDG+ +ASAS + + +W+ L + ++ + + P G +A
Sbjct: 224 VRGVAFSPDGQTIASAS-DDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASD 282
Query: 275 DGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLA 313
D T LW N + + S V G + P+G+ I A
Sbjct: 283 DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 321
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 21/122 (17%)
Query: 207 LRSQNGEQITALS------WG----PDGRYLASASYESSSFTIWDV-AQGLGTPIRRGFG 255
L ++NG+ + L+ WG PDG+ +ASAS + + +W+ Q L T
Sbjct: 288 LWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASAS-DDKTVKLWNRNGQHLQT-----LT 341
Query: 256 GLSILKW----SPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMIL 311
G S W SP G +A D T LW N + + S V G + P+G+ I
Sbjct: 342 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIA 401
Query: 312 LA 313
A
Sbjct: 402 SA 403
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 207 LRSQNGEQITALS------WG----PDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGG 256
L ++NG+ + L+ WG PD + +ASAS + + +W+ L +
Sbjct: 411 LWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASAS-DDKTVKLWNRNGQLLQTLTGHSSS 469
Query: 257 LSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMILLA 313
+ + +SP G +A D T LW N + + S V G + P+G+ I A
Sbjct: 470 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 526
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 25/136 (18%)
Query: 155 NGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPGTRWTLVDFLRSQNGEQ 214
N R + G KG + +W S+PGN + V S L L+R +++RS
Sbjct: 61 NPTRHVYTGGKGCVKVWDISHPGNKSPV-----SQLDCLNRD--------NYIRS----- 102
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQ---GLGTPIRRGFGGLSILKWSPTGDYFFA 271
PDG L E+S+ +IWD+A + + L SP F+
Sbjct: 103 ---CKLLPDGCTLIVGG-EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158
Query: 272 AKFDGTFYLWETNTWT 287
DG +W+ + T
Sbjct: 159 CCSDGNIAVWDLHNQT 174
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 214 QITALSWGPDGRYLASASYESSSFTIWD---VAQGLGTPIRRGFGGLSILKWSPTGDYFF 270
+I A+ WG D R L SAS + IWD + P+R + + ++P+G+Y
Sbjct: 57 KIYAMHWGTDSRLLVSAS-QDGKLIIWDSYTTNKVHAIPLRSSW--VMTCAYAPSGNYVA 113
Query: 271 AAKFDGTFYLW-----ETNTWTSEPWSSTSGFVTGATWDPEGRMI 310
D ++ E N S + +G+++ + + +++
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 214 QITALSWGPDGRYLASASYESSSFTIWD---VAQGLGTPIRRGFGGLSILKWSPTGDYFF 270
+I A+ WG D R L SAS + IWD + P+R + + ++P+G+Y
Sbjct: 68 KIYAMHWGTDSRLLVSAS-QDGKLIIWDSYTTNKVHAIPLRSSW--VMTCAYAPSGNYVA 124
Query: 271 AAKFDGTFYLW-----ETNTWTSEPWSSTSGFVTGATWDPEGRMI 310
D ++ E N S + +G+++ + + +++
Sbjct: 125 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 169
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 214 QITALSWGPDGRYLASASYESSSFTIWD---VAQGLGTPIRRGFGGLSILKWSPTGDYFF 270
+I A+ WG D R L SAS + IWD + P+R + + ++P+G+Y
Sbjct: 57 KIYAMHWGTDSRLLVSAS-QDGKLIIWDSYTTNKVHAIPLRSSW--VMTCAYAPSGNYVA 113
Query: 271 AAKFDGTFYLW-----ETNTWTSEPWSSTSGFVTGATWDPEGRMI 310
D ++ E N S + +G+++ + + +++
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 214 QITALSWGPDGRYLASASYESSSFTIWD---VAQGLGTPIRRGFGGLSILKWSPTGDYFF 270
+I A+ WG D R L SAS + IWD + P+R + + ++P+G+Y
Sbjct: 57 KIYAMHWGTDSRLLLSAS-QDGKLIIWDSYTTNKVHAIPLRSSW--VMTCAYAPSGNYVA 113
Query: 271 AAKFDGTFYLW-----ETNTWTSEPWSSTSGFVTGATWDPEGRMI 310
D ++ E N S + +G+++ + + +++
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 11/105 (10%)
Query: 214 QITALSWGPDGRYLASASYESSSFTIWD---VAQGLGTPIRRGFGGLSILKWSPTGDYFF 270
+I A+ WG D R L SAS + IWD + P+R + + ++P+G+Y
Sbjct: 57 KIYAMHWGTDSRLLLSAS-QDGKLIIWDSYTTNKVHAIPLRSSW--VMTCAYAPSGNYVA 113
Query: 271 AAKFDGTFYLW-----ETNTWTSEPWSSTSGFVTGATWDPEGRMI 310
D ++ E N S + +G+++ + + +++
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIV 158
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 16/131 (12%)
Query: 210 QNGEQITALSWGPDGRYLASASYESSSF-TIWDVAQGLGTPIRRGF-GGLSILKWSPTGD 267
++ EQ+ + +L A+ + F +WD+ Q G ++ ++SP +
Sbjct: 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE 756
Query: 268 YFFAAKFDGTFYLWETNTW--------------TSEPWSSTSGFVTGATWDPEGRMILLA 313
+ DGT LW+ + + +P V +W +G I++A
Sbjct: 757 LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 816
Query: 314 FAGSLTLGSIH 324
+ L IH
Sbjct: 817 AKNKVLLFDIH 827
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 16/131 (12%)
Query: 210 QNGEQITALSWGPDGRYLASASYESSSF-TIWDVAQGLGTPIRRGF-GGLSILKWSPTGD 267
++ EQ+ + +L A+ + F +WD+ Q G ++ ++SP +
Sbjct: 704 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE 763
Query: 268 YFFAAKFDGTFYLWETNTW--------------TSEPWSSTSGFVTGATWDPEGRMILLA 313
+ DGT LW+ + + +P V +W +G I++A
Sbjct: 764 LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 823
Query: 314 FAGSLTLGSIH 324
+ L IH
Sbjct: 824 AKNKVLLFDIH 834
>pdb|3FIE|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh1)
pdb|3FIE|B Chain B, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh1)
pdb|3FII|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin
Serotype F Catalytic Domain With An Inhibitor (Inh2)
Length = 427
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 30/148 (20%)
Query: 135 DACILTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALS 194
D LT+D+++D + L+ + ++ G + + SY A +LG
Sbjct: 74 DPNYLTTDAEKD-RYLKTTIKLFKRINSNPAGEVLLQEISY----------AKPYLGNEH 122
Query: 195 R-----GPGTRWTLVDFLRSQNGE-----QITALSWGPDGRYLASASYESSSFTIWDVAQ 244
P TR T V+ S N + + L GPD +E+SS+ + +
Sbjct: 123 TPINEFHPVTRTTSVNIKSSTNVKSSIILNLLVLGAGPD-------IFENSSYPVRKLMD 175
Query: 245 --GLGTPIRRGFGGLSILKWSPTGDYFF 270
G+ P GFG ++I+ +SP +Y F
Sbjct: 176 SGGVYDPSNDGFGSINIVTFSPEYEYTF 203
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 64/154 (41%), Gaps = 19/154 (12%)
Query: 139 LTSDSQRDVKVLEWRPNGGRSLSVGCKGGICIWAPSYPGNAASVRSGAASFLGALSRGPG 198
+ + S D + W G+ + G + W ++ ++ + +G + +G ++ G
Sbjct: 94 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATG--THVGKVNI-FG 150
Query: 199 TRWTLVDFLRSQNGEQITALSWGPDGRYLASASYESSSFTIWDVA--------QGLGTPI 250
++ G+ I ++++ PDG+YLAS + + I+D+A +G PI
Sbjct: 151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAID-GIINIFDIATGKLLHTLEGHAMPI 209
Query: 251 RRGFGGLSILKWSPTGDYFFAAKFDGTFYLWETN 284
R L +SP A DG +++
Sbjct: 210 RS-------LTFSPDSQLLVTASDDGYIKIYDVQ 236
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 224 GRYLASASYESSSFTIWDVAQGLGTPIRRGFGG-LSILKWSPTGDYFFAAKFDGTFYLW 281
GR L A Y + +WDV +G I G +S L+ SP G F + +D T +W
Sbjct: 296 GRLLF-AGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEPWSSTSGFVTGATWDPEGRMI-LLA 313
G+ + +W P+ D + AK+D T + E E + +G P R I L+A
Sbjct: 280 NGMDVSEWDPSKDKYITAKYDATTAI-EAKALNKEALQAEAGL-------PVDRKIPLIA 331
Query: 314 FAGSL 318
F G L
Sbjct: 332 FIGRL 336
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAA 272
+IT L + P G L S+S + IW V G G ++ + G +A
Sbjct: 141 EITKLKFFPSGEALISSS-QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSA 199
Query: 273 KFDGTFYLWETNTWTS 288
DGT LWE T T+
Sbjct: 200 SLDGTIRLWECGTGTT 215
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 214 QITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGF-GGLSILKWSPTGDYFFAA 272
+IT L + P G L S+S + IW V G G ++ + G +A
Sbjct: 138 EITKLKFFPSGEALISSS-QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSA 196
Query: 273 KFDGTFYLWETNTWTS 288
DGT LWE T T+
Sbjct: 197 SLDGTIRLWECGTGTT 212
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 62/173 (35%), Gaps = 38/173 (21%)
Query: 128 YEDSEGKDACILTSDSQRDVKV------LEWRPNGGRSLSVGCKGGICIWAPSYPGNAAS 181
Y +G + DS ++V L W P+G + S I IW N A+
Sbjct: 217 YNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW------NVAT 270
Query: 182 VRSGAASFLGAL--SRGPGTRWTL---------------------VDFLRSQNGEQITAL 218
++ +G + G WT +D +R + + ITAL
Sbjct: 271 LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITAL 330
Query: 219 SWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSI--LKWSPTGDYF 269
S DG+ L SA E WD++ G+ + I +K + GD F
Sbjct: 331 SSSADGKTLFSADAE-GHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 382
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 209 SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIR---RGFGGLSILKWS 263
S + +++ L W PDGR+LAS + + +W A G G P++ + G + + W
Sbjct: 238 SGHSQEVCGLRWAPDGRHLASGGND-NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 264 P 264
P
Sbjct: 297 P 297
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 210 QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ 244
Q GE I++++W +G YLA + S+ +WDV Q
Sbjct: 156 QPGEYISSVAWIKEGNYLAVGT-SSAEVQLWDVQQ 189
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 209 SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIR---RGFGGLSILKWS 263
S + +++ L W PDGR+LAS + + +W A G G P++ + G + + W
Sbjct: 227 SGHSQEVCGLRWAPDGRHLASGGND-NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 264 P 264
P
Sbjct: 286 P 286
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 210 QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ 244
Q GE I++++W +G YLA + S+ +WDV Q
Sbjct: 145 QPGEYISSVAWIKEGNYLAVGT-SSAEVQLWDVQQ 178
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 209 SQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLG--TPIR---RGFGGLSILKWS 263
S + +++ L W PDGR+LAS + + +W A G G P++ + G + + W
Sbjct: 147 SGHSQEVCGLRWAPDGRHLASGGND-NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 264 P 264
P
Sbjct: 206 P 206
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 210 QNGEQITALSWGPDGRYLASASYESSSFTIWDVAQ 244
Q GE I++++W +G YLA + S+ +WDV Q
Sbjct: 65 QPGEYISSVAWIKEGNYLAVGT-SSAEVQLWDVQQ 98
>pdb|2W18|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Human
Palb2
Length = 356
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 212 GEQITALSWGPDGRYL--------ASASYESSSFTIWDVAQGLGTPIRRGFGGL--SILK 261
G + L G GR+L A+A S + IWD+ G T + S +K
Sbjct: 274 GVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK 333
Query: 262 WSPTGDYFFAAKFDGTFYLW 281
WS T + A + DG +++
Sbjct: 334 WSGTDSHLLAGQKDGNIFVY 353
>pdb|3EU7|A Chain A, Crystal Structure Of A Palb2 BRCA2 COMPLEX
Length = 356
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 10/80 (12%)
Query: 212 GEQITALSWGPDGRYL--------ASASYESSSFTIWDVAQGLGTPIRRGFGGL--SILK 261
G + L G GR+L A+A S + IWD+ G T + S +K
Sbjct: 274 GVMLYCLPPGQAGRFLEGDVKDHXAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK 333
Query: 262 WSPTGDYFFAAKFDGTFYLW 281
WS T + A + DG +++
Sbjct: 334 WSGTDSHLLAGQKDGNIFVY 353
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 202 TLVDFL-RSQNGEQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPIRRGFGGLSIL 260
TL+D L + + + I +++W P LA+ S++S+ +IW + L+I+
Sbjct: 47 TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST-VSIWAKEESADRTFEMDL--LAII 103
Query: 261 K----------WSPTGDYFFAAKFDGTFYLWETN 284
+ WS G Y D + ++WET+
Sbjct: 104 EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 255 GGLSILKWSPTGDYFFAAKFDGTFYLWETNTWTSEP-WSSTSGFVTGATWDPEGRMILLA 313
G +S+L+++ T +A DGT +W S+ + S + A+W + ++I +
Sbjct: 248 GPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCS 307
Query: 314 FAGSLTLGSI 323
GS+ L S+
Sbjct: 308 MDGSVRLWSL 317
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 215 ITALSWGPDGRYLASASYESSSFTIWDVAQ-GLGTPIRRGFGGLS-------ILKWSPTG 266
+ ++W P + ++ E + +W++ GL P+R L I+ W PT
Sbjct: 84 VLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA 143
Query: 267 -DYFFAAKFDGTFYLWETNT 285
+ +A D +W+ T
Sbjct: 144 QNVLLSAGXDNVILVWDVGT 163
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 113 IVAFISGSTQVIVRDYEDSE 132
IVAF++G+ QV+ DY D E
Sbjct: 95 IVAFLAGADQVVATDYPDPE 114
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 28.1 bits (61), Expect = 8.2, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 16/131 (12%)
Query: 210 QNGEQITALSWGPDGRYLASASYESSSF-TIWDVAQGLGTPIRRGF-GGLSILKWSPTGD 267
++ EQ+ + +L A+ S F +WD+ Q G ++ ++SP
Sbjct: 703 EHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDK 762
Query: 268 YFFAAKFDGTFYLWETNTWTS--------------EPWSSTSGFVTGATWDPEGRMILLA 313
+ DGT LW+ + +P V +W +G I++A
Sbjct: 763 LLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVA 822
Query: 314 FAGSLTLGSIH 324
+ L IH
Sbjct: 823 AKNKIFLFDIH 833
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 213 EQITALSWGPDGRYLASASYESSSFTIWDVAQGLGTPI 250
++I A+SW P Y+ + + S +WDV + G I
Sbjct: 187 QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLI 224
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,796,403
Number of Sequences: 62578
Number of extensions: 446386
Number of successful extensions: 1830
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1685
Number of HSP's gapped (non-prelim): 143
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)