BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018808
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I
Length = 153
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 75/111 (67%), Gaps = 2/111 (1%)
Query: 24 IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
+R +V++ SL GK + YFSASWC PC+ FTP L E Y++ +FEV+F + DE+
Sbjct: 13 LRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWDEE 72
Query: 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 132
++ F GYF+KMPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 73 EDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 123
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 189 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 248
++ V L GK + YFS S FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 19 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 77
Query: 249 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 78 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 128
>pdb|1OKD|A Chain A, Nmr-Structure Of Tryparedoxin 1
Length = 154
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 75/111 (67%), Gaps = 2/111 (1%)
Query: 24 IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
+R +V++ SL GK + YFSASWC PC+ FTP L E Y++ +FEV+F + DE+
Sbjct: 14 LRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWDEE 73
Query: 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 132
++ F GYF+KMPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 74 EDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 124
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 189 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 248
++ V L GK + YFS S FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 78
Query: 249 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 79 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia
Fasciculata
Length = 146
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 75/111 (67%), Gaps = 2/111 (1%)
Query: 24 IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
+R +V++ SL GK + YFSASWC PC+ FTP L E Y++ +FEV+F + DE+
Sbjct: 14 LRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWDEE 73
Query: 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 132
++ F GYF+KMPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 74 EDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 124
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 189 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 248
++ V L GK + YFS S FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 78
Query: 249 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 79 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata
pdb|1O7U|A Chain A, Radiation Induced Tryparedoxin-I
pdb|1O85|A Chain A, Radiation-Reduced Tryparedoxin-I
pdb|1O8W|A Chain A, Radiation-Reduced Tryparedoxin-I
Length = 146
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 75/111 (67%), Gaps = 2/111 (1%)
Query: 24 IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
+R +V++ SL GK + YFSASWC PC+ FTP L E Y++ +FEV+F + DE+
Sbjct: 14 LRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKNFEVVFCTWDEE 73
Query: 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 132
++ F GYF+KMPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 74 EDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 124
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 189 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 248
++ V L GK + YFS S FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 78
Query: 249 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 79 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala
Length = 146
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 74/111 (66%), Gaps = 2/111 (1%)
Query: 24 IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
+R +V++ SL GK + YFSASWC P + FTP L E Y++ +FEV+F + DE+
Sbjct: 14 LRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEE 73
Query: 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILD-ENGKVLS 132
++ F GYF+KMPWLAVPF+ SE KL + F V IP L+ +D ++G V++
Sbjct: 74 EDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 124
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
Query: 189 KISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 248
++ V L GK + YFS S + FTP+L+E Y+K + ++FE+V + D+EE+ F
Sbjct: 20 EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFH-ESKNFEVVFCTWDEEEDGFA 78
Query: 249 RDLGSMPWLALPF-KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298
MPWLA+PF + ++ +KL+++F + ++PTL+ + D + + A A
Sbjct: 79 GYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARA 129
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 24 IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
+ S +V L SL GK + LYFSASWC PC+ FTP+LAE Y + +FEV+ +S DE+
Sbjct: 14 LLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDEN 73
Query: 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN 127
+ F Y+ KMPWLA+PF T +L + F V IP L+ ++ +
Sbjct: 74 ESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINAD 118
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 68/128 (53%), Gaps = 4/128 (3%)
Query: 185 SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 244
S ++S+ L GKT+ LYFS S FTP L E YEK ++FE+VLIS D+ E
Sbjct: 16 SKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEK-HHVAKNFEVVLISWDENE 74
Query: 245 ESFKRDLGSMPWLALPFKDKSR-EKLARYFELSTLPTLVIIGPDGKTLHSNVAEA--IEE 301
F G MPWLALPF +S +L + F + ++PTL+ I D + A IE+
Sbjct: 75 SDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIED 134
Query: 302 HGVGAFPF 309
FP+
Sbjct: 135 PDGANFPW 142
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Query: 24 IRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
+R D +DSL GK + YFSASWC PC+ FTP L E Y + +FE+I S DE+
Sbjct: 34 LRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEE 93
Query: 83 DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN 127
++ F Y++KMPWL++PF++ + L + + V IP L+ L+ +
Sbjct: 94 EDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNAD 138
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM 254
L GKT+ YFS S FTP+LVE YEK ++FEI+L S D+EE+ F M
Sbjct: 46 LSGKTVFFYFSASWCPPCRGFTPQLVEFYEK-HHDSKNFEIILASWDEEEDDFNAYYAKM 104
Query: 255 PWLALPFKDKS-REKLARYFELSTLPTLVIIGPD-GKTLHSNVAEAIEEHGVG-AFPFTP 311
PWL++PF +++ E L + + + ++PTL+ + D G T+ + A+ + +G FP+
Sbjct: 105 PWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMGEQFPWRD 164
Query: 312 E 312
E
Sbjct: 165 E 165
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
+++ + L SL GK + YFSASWC PC+ FTP L + Y + + +FEV+ +S DE
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDE 72
Query: 82 DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEII 139
E FK Y++KMPWLA+PF D + + L F V IP LV + D + + ++
Sbjct: 73 SAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVV 132
Query: 140 REYGVEGYPF 149
++ + +P+
Sbjct: 133 KDPEAKDFPW 142
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
V+ I++ L GKT+ YFS S FTP+L++ Y K + ++FE++LIS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFY-KAHAEKKNFEVMLISWD 71
Query: 242 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 299
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
+++ + L SL GK + YFSASWC PC+ FTP L + Y + + +FEV+ +S DE
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDE 75
Query: 82 DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEII 139
E FK Y++KMPWLA+PF D + + L F V IP LV + D + + ++
Sbjct: 76 SAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVV 135
Query: 140 REYGVEGYPF 149
++ + +P+
Sbjct: 136 KDPEAKDFPW 145
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
V+ I++ L GKT+ YFS S FTP+L++ Y K + ++FE++LIS D
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFY-KAHAEKKNFEVMLISWD 74
Query: 242 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 299
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 75 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 133
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 74/130 (56%), Gaps = 3/130 (2%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
+++ + L SL GK + YFSASWC PC+ FTP L + Y + + +FEV+ +S DE
Sbjct: 14 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDE 73
Query: 82 DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEII 139
E FK Y++KMPWLA+PF D + + L F V IP LV + D + + ++
Sbjct: 74 SAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVV 133
Query: 140 REYGVEGYPF 149
++ + +P+
Sbjct: 134 KDPEAKDFPW 143
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
V+ I++ L GKT+ YFS S FTP+L++ Y K + ++FE++LIS D
Sbjct: 14 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFY-KAHAEKKNFEVMLISWD 72
Query: 242 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 299
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 73 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 131
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
+++ + L SL GK + YFSASWC PC+ FTP L + Y + +FEV+ +S DE
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAESKNFEVMLISWDE 75
Query: 82 DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEII 139
E FK Y++KMPWLA+PF D + + L F V IP LV + D + + ++
Sbjct: 76 SAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVV 135
Query: 140 REYGVEGYPF 149
++ + +P+
Sbjct: 136 KDPEAKDFPW 145
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
V+ I++ L GKT+ YFS S FTP+L++ Y K + ++FE++LIS D
Sbjct: 16 VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFY-KAHAESKNFEVMLISWD 74
Query: 242 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 299
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 75 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 133
>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine
Length = 144
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 73/130 (56%), Gaps = 3/130 (2%)
Query: 23 LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
+++ + L SL GK + YFSASWC P + FTP L + Y + + +FEV+ +S DE
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDE 72
Query: 82 DDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVIL--DENGKVLSDGGVEII 139
E FK Y++KMPWLA+PF D + + L F V IP LV + D + + ++
Sbjct: 73 SAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVV 132
Query: 140 REYGVEGYPF 149
++ + +P+
Sbjct: 133 KDPEAKDFPW 142
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241
V+ I++ L GKT+ YFS S S FTP+L++ Y K + ++FE++LIS D
Sbjct: 13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFY-KAHAEKKNFEVMLISWD 71
Query: 242 DEEESFKRDLGSMPWLALPFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAI 299
+ E FK MPWLALPF+D K E L F++ ++PTLV + D + + A +
Sbjct: 72 ESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin
Related Protein 16 And Its Role In Regulating
Transcription Factor Nf-Kb Activity
Length = 143
Score = 80.9 bits (198), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 74/131 (56%), Gaps = 7/131 (5%)
Query: 23 LIRSNGDQVKLD-SLKGK--IGLYFSASWCGPCQRFTPILAEVYNEL-SRQGDFEVIFVS 78
L++ N +V + +LK K IG YFSA WC PC+ FTPILA++Y+EL FE+IFVS
Sbjct: 9 LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVS 68
Query: 79 GDEDDEAFKGYF--SKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGV 136
D ++ Y S WLA+P+ S + + + GIP LVI+ ++G ++S G
Sbjct: 69 SDRSEDDMFQYMMESHGDWLAIPYR-SGPASNVTAKYGITGIPALVIVKKDGTLISMNGR 127
Query: 137 EIIREYGVEGY 147
++ G +
Sbjct: 128 GEVQSLGPRAF 138
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Query: 200 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-DEEESFKRDLGSM-PWL 257
IG YFS FTP L ++Y +L FEI+ +S D E++ F+ + S WL
Sbjct: 29 IGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWL 88
Query: 258 ALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAF 307
A+P++ + + ++ +P LVI+ DG + N ++ G AF
Sbjct: 89 AIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEVQSLGPRAF 138
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 10/143 (6%)
Query: 19 ARDFLIR-SNGDQVKLDSLKGKI-GLYFSASWCGPCQRFTPIL-AEVYNELSRQGDFEVI 75
A DF I ++G QV L SL+GK+ L F+ASWCG C++ P + +++ + DF +I
Sbjct: 13 APDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALI 72
Query: 76 FVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL-FKVMGIPHLVILDENGKVLSDG 134
+ DE E F+K + P D + + GI V++D GK+
Sbjct: 73 GIDRDEPLEKVLA-FAKSTGVTYPLGLDPGADIFAKYALRDAGITRNVLIDREGKI---- 127
Query: 135 GVEIIREYGVEGYPFTVERIKEM 157
V++ R Y E + V++I EM
Sbjct: 128 -VKLTRLYNEEEFASLVQQINEM 149
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 180 DFVIS-SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 238
DF I+ +DG+++++S L GK + L F+ S + P +E LK K ++ + LI
Sbjct: 15 DFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMP-FIEKDIWLKHK-DNADFALI 72
Query: 239 SLDDEE 244
+D +E
Sbjct: 73 GIDRDE 78
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85
NG V L LKGK I + A+WCGPC+ P L E+ + + + D + +S D++ +A
Sbjct: 19 NGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGK-DIHFVSLSCDKNKKA 77
Query: 86 FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132
++ +K + R +D + + GIP ++LD +GK++S
Sbjct: 78 WENMVTKDQLKGIQLHMGTDRTFMDA-YLINGIPRFILLDRDGKIIS 123
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 9/129 (6%)
Query: 186 DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE 245
+G+ +S++DL+GK I + + P L E+ EK GK F V +S D ++
Sbjct: 19 NGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHF--VSLSCDKNKK 76
Query: 246 SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVG 305
+++ + + + + ++ +P +++ DGK + +N+ +
Sbjct: 77 AWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSD----- 131
Query: 306 AFPFTPEKF 314
P T EKF
Sbjct: 132 --PKTAEKF 138
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 9/114 (7%)
Query: 24 IRSNGDQVKLDSLKGK---IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD 80
I G+ V L+ KGK + +F+ C C++ TP L + YN +G F + VS D
Sbjct: 15 IDLKGNSVSLNDFKGKYVLVDFWFAG--CSWCRKETPYLLKTYNAFKDKG-FTIYGVSTD 71
Query: 81 EDDEAFKGYF--SKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132
+E +K K W V + +D L E + ++G PH++++D GK+++
Sbjct: 72 RREEDWKKAIEEDKSYWNQVLLQKDDVKDVL-ESYCIVGFPHIILVDPEGKIVA 124
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 13 SLLSSSARDFLIRS-NGDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQG 70
SL + A DF + + NG+ VKL LKG++ + F A+WC PC+ P + N
Sbjct: 2 SLEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSXXRL-NAAXAGK 60
Query: 71 DFEVIFVSGDEDDE-AFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGK 129
F + VS DE + A + +F K + D++ R + +L+ G+P ++D +G
Sbjct: 61 PFRXLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKR--VGKLYGTTGVPETFVIDRHGV 118
Query: 130 VL 131
+L
Sbjct: 119 IL 120
>pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like
Protein Bvu_1432 From Bacteroides Vulgatus
Length = 152
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
Query: 187 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 246
G S++DL+GK + + F++ + SA L E+Y K +G FEI ISLD +E
Sbjct: 25 GNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHF 82
Query: 247 FKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGK 289
+K ++PW+ + + + + ++ LP++ ++ + +
Sbjct: 83 WKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNE 125
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 28 GDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86
G+ L LKGK+ L F+ L E+YN+ + QG FE+ +S D D+ +
Sbjct: 25 GNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG-FEIYQISLDGDEHFW 83
Query: 87 KGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134
K +PW+ V ++ + L+ V +P + +++ N ++ + G
Sbjct: 84 KTSADNLPWVCVRDANGAYSSYI-SLYNVTNLPSVFLVNRNNELSARG 130
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 17 SSARDFLIR-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
S A +F++ +NG +++L LKGK + L F +WC PC++ P +A Y QG E+
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQG-VEI 62
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ V+ E A F K + P R LD + V +P +++ GKV+
Sbjct: 63 VAVNVGESKIAVHN-FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 117
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 176 SHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 234
S + +FV+ ++G++I +SDL+GK + L F + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKQFPYMANQYKHFKSQG--VE 61
Query: 235 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 5/117 (4%)
Query: 17 SSARDFLIR-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
S A +F++ +NG +++L LKGK + L F +WC PC++ P +A Y QG E+
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG-VEI 62
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ V+ E A F K + P R LD + V +P +++ GKV+
Sbjct: 63 VAVNVGESKIAVHN-FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 117
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 176 SHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 234
S + +FV+ ++G++I +SDL+GK + L F + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VE 61
Query: 235 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 19 ARDFLIRSNGDQVKLDSLKGKI-GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFV 77
A DF + VKL G + L F ASWCGPC++ P + + +G F+V+ V
Sbjct: 9 APDFALPGKTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKG-FQVVAV 67
Query: 78 SGDEDDEAFKGYFSKMPW-LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ D + +++P V F + + + L+ V G P ++D NGKVL
Sbjct: 68 NLDAKTGDAXKFLAQVPAEFTVAF---DPKGQTPRLYGVKGXPTSFLIDRNGKVL 119
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 17 SSARDFLIR-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
S A +F++ +NG +++L LKGK + L F +WC C++ P +A Y QG E+
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQG-VEI 62
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ V+ E A F K + P R LD + V +P +++ GKV+
Sbjct: 63 VAVNVGESKIAVHN-FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 117
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 10/120 (8%)
Query: 176 SHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 234
S + +FV+ ++G++I +SDL+GK + L F + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQG--VE 61
Query: 235 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 17 SSARDFLIR-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
S A +F++ +NG +++L LKGK + L F +WC C++ P +A Y QG E+
Sbjct: 1 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQG-VEI 59
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ V+ E A F K + P R LD + V +P +++ GKV+
Sbjct: 60 VAVNVGESKIAVHN-FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 114
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 176 SHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 234
S + +FV+ ++G++I +SDL+GK + L F + + + P + Y+ K +G E
Sbjct: 1 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQG--VE 58
Query: 235 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 59 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 114
>pdb|2H19|A Chain A, Crystal Structure Of Resa Cys77ala Variant
pdb|2H19|B Chain B, Crystal Structure Of Resa Cys77ala Variant
Length = 143
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 17 SSARDFLIR-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
S A +F++ +NG +++L LKGK + L F +WC P ++ P +A Y QG E+
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQG-VEI 62
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ V+ E A F K + P R LD + V +P +++ GKV+
Sbjct: 63 VAVNVGESKIAVHN-FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 117
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 176 SHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 234
S + +FV+ ++G++I +SDL+GK + L F + + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPAKKEFPYMANQYKHFKSQG--VE 61
Query: 235 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|2H1A|A Chain A, Resa C74a Variant
pdb|2H1A|B Chain B, Resa C74a Variant
Length = 143
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 17 SSARDFLIR-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
S A +F++ +NG +++L LKGK + L F +W PC++ P +A Y QG E+
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQG-VEI 62
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ V+ E A F K + P R LD + V +P +++ GKV+
Sbjct: 63 VAVNVGESKIAVHN-FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 117
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 10/120 (8%)
Query: 176 SHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 234
S + +FV+ ++G++I +SDL+GK + L F + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPCKKEFPYMANQYKHFKSQG--VE 61
Query: 235 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
>pdb|2H1G|A Chain A, Resa C74aC77A
pdb|2H1G|B Chain B, Resa C74aC77A
Length = 143
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 176 SHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 234
S + +FV+ ++G++I +SDL+GK + L F + + + + P + Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPAKKEFPYMANQYKHFKSQG--VE 61
Query: 235 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+GK +
Sbjct: 62 IVAVNVGESKIAVHNFMKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPEGKVV 117
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 17 SSARDFLIR-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
S A +F++ +NG +++L LKGK + L F +W P ++ P +A Y QG E+
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWAEPAKKEFPYMANQYKHFKSQG-VEI 62
Query: 75 IFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131
+ V+ E A F K + P R LD + V +P +++ GKV+
Sbjct: 63 VAVNVGESKIAVHN-FMKSYGVNFPVVLDTDRQVLDA-YDVSPLPTTFLINPEGKVV 117
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 17 SSARDFLIR-SNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV 74
S A +F++ +NG +++L LKGK + L F +WC PC++ P A Y QG E+
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQG-VEI 62
Query: 75 IFVSGDEDDEAFKGY 89
+ V+ E A +
Sbjct: 63 VAVNVGESKIAVHNF 77
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 10/116 (8%)
Query: 176 SHSRDFVI-SSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFE 234
S + +FV+ ++G++I +SDL+GK + L F + + + P Y+ K +G E
Sbjct: 4 SDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYXANQYKHFKSQG--VE 61
Query: 235 IVLISLDDEE---ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPD 287
IV +++ + + +F + G + L D R+ L Y ++S LPT +I P+
Sbjct: 62 IVAVNVGESKIAVHNFXKSYGVNFPVVL---DTDRQVLDAY-DVSPLPTTFLINPE 113
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To
Thioredoxin
Length = 222
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 12 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 69
Query: 79 GDED 82
D++
Sbjct: 70 IDQN 73
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 26 SNGDQVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84
++G KL +GK L A+WC PC++ P L E+ +LS +FEV+ ++ D D
Sbjct: 48 ADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGP-NFEVVAINIDTRDP 106
Query: 85 AFKGYFSKMPWLAVP--FSDSETR--DKLDELFKVMGIPHLVILDENG 128
F K L F+D + + L + + +G+P V++D G
Sbjct: 107 EKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQG 154
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In
Hexagonal (P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D + D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In
Hexagonal (P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20
Structures
Length = 108
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In
Hexagonal (P61) Space Group
Length = 108
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 60
Query: 79 GDED 82
D++
Sbjct: 61 IDQN 64
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli
At 1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On
The Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine
And Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In
Hexagonal (P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89
F A+WCGPC+ P+L E+ E R D V + D + E + +
Sbjct: 37 FWATWCGPCKMVAPVLEEIATE--RATDLTVAKLDVDTNPETARNF 80
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 23 LIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD 80
+I D D LK G I + F A WCGPC+ PIL E+ +E QG V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLNID 61
Query: 81 ED 82
++
Sbjct: 62 QN 63
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In
Hexagonal (P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In
Hexagonal (P61) Space Group
Length = 108
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL ++ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In
Hexagonal (P61) Space Group
Length = 108
Score = 38.9 bits (89), Expect = 0.005, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ PIL E+ ++ QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 38.1 bits (87), Expect = 0.006, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D +K G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In
Hexagonal (P61) Space Group
Length = 108
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I + D LK G I + F A WCGPC+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 11/76 (14%)
Query: 24 IRSNGD-QVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
++ +GD + L+ K K+ + F A+WCGPC+ P+ + ELS + ++ IFV D
Sbjct: 18 LKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPL----FKELSEK--YDAIFVKVDV 71
Query: 82 D---DEAFKGYFSKMP 94
D + A K S MP
Sbjct: 72 DKLEETARKYNISAMP 87
>pdb|3IA1|A Chain A, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
pdb|3IA1|B Chain B, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
Length = 154
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 14/119 (11%)
Query: 21 DFLIR-SNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 79
DFL+ G V ++ + F ASWC C+ P L V E F VI S
Sbjct: 13 DFLLLDPKGQPVTPATVSKPAVIVFWASWCTVCKAEFPGLHRVAEETGVP--FYVI--SR 68
Query: 80 DEDD------EAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132
+ D E K Y +P LA SD + ++ FKV+G P ++D GKV++
Sbjct: 69 EPRDTREVVLEYMKTYPRFIPLLA---SDRDRPHEVAARFKVLGQPWTFVVDREGKVVA 124
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED---DEAFKGYFSKMP 94
F A+WCGPC+ P+ + ELS + ++ IFV D D + A K S MP
Sbjct: 31 FFATWCGPCKTIAPL----FKELSEK--YDAIFVKVDVDKLEETARKYNISAMP 78
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 4 NGANSHDIQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVY 63
NG H ++ + +F N ++ K + K I + F A WCGPC+ PIL
Sbjct: 8 NGKVIHLTKAEFLAKVYNF--EKNPEEWKYEGDKPAI-VDFYADWCGPCKMVAPIL---- 60
Query: 64 NELSRQGDFEVIFVSGDEDDE 84
+EL+++ D +++ D + E
Sbjct: 61 DELAKEYDGQIVIYKVDTEKE 81
>pdb|3EWL|A Chain A, Crystal Structure Of Conserved Protein Bf1870 Of Unknown
Function From Bacteroides Fragilis
pdb|3EWL|B Chain B, Crystal Structure Of Conserved Protein Bf1870 Of Unknown
Function From Bacteroides Fragilis
Length = 142
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 19 ARDF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEV--YNELSRQGDFEV 74
A DF + +GD + LK + L+F C C++F + AE+ + E G V
Sbjct: 7 AADFTYVTVHGDNSRXSRLKAQYTXLFFYDPDCSNCRKFEKLFAEIPAFVEXVENGTLRV 66
Query: 75 IFVSGDEDDE--AFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV-L 131
+ + DE+ E A K + W+ + R + +L+ + P + +LD +V L
Sbjct: 67 LAIYPDENREEWATKAVYXPQGWIVGWNKAGDIRTR--QLYDIRATPTIYLLDGRKRVIL 124
Query: 132 SDGGVEIIREY 142
D E + +Y
Sbjct: 125 KDTSXEQLIDY 135
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin
C35a
Length = 128
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 18 SARDFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVI 75
S D +I D D LK G I + F A WCGP + PIL E+ +E QG V
Sbjct: 19 SHSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADE--YQGKLTVA 76
Query: 76 FVSGDED 82
++ D++
Sbjct: 77 KLNIDQN 83
>pdb|2L5O|A Chain A, Solution Structure Of A Putative Thioredoxin From
Neisseria Meningitidis
Length = 153
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 187 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE-- 244
G+ +S +DL+GK + F S P++++ K K V +D E
Sbjct: 18 GKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESV 77
Query: 245 ESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297
+ +D G +P+ + DK+ + + F PT V+IG G+ L + V E
Sbjct: 78 RQYVKDYG-LPFTVMYDADKA---VGQAFGTQVYPTSVLIGKKGEILKTYVGE 126
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F+ASWCGPC+ P A++ +L V+F+ D D+
Sbjct: 45 FTASWCGPCRFIAPFFADLAKKLPN-----VLFLKVDTDE 79
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of
Thioredoxin 1 From Yeast (Trx1)
Length = 103
Score = 36.6 bits (83), Expect = 0.022, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGYFSKMPWL 96
F A+WCGPC+ P++ E ++E Q DF + V DE D A K S MP L
Sbjct: 25 FYATWCGPCKMIAPMI-EKFSEQYPQADFYKLDV--DELGDVAQKNEVSAMPTL 75
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 36.6 bits (83), Expect = 0.022, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGYFSKMPWL 96
F A+WCGPC+ P++ E ++E Q DF + V DE D A K S MP L
Sbjct: 31 FYATWCGPCKMIAPMI-EKFSEQYPQADFYKLDV--DELGDVAQKNEVSAMPTL 81
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
Length = 116
Score = 36.6 bits (83), Expect = 0.024, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89
F A+WCGPC+ P+L E+ E R D V + D + E + +
Sbjct: 32 FWATWCGPCKMVAPVLEEIATE--RATDLTVAKLDVDTNPETARNF 75
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 36.2 bits (82), Expect = 0.028, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCG C+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 36.2 bits (82), Expect = 0.028, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGPC+ IL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 44 FSASWCGPCQRFTPILAE 61
F+ASWCGPC+ P+ AE
Sbjct: 35 FTASWCGPCRVIAPVFAE 52
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
Length = 105
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 30 QVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
Q LD+ K+ + FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 12 QEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 26/94 (27%)
Query: 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP 99
I LYF SW PC+ + + NE S V F+S D D+ +
Sbjct: 24 IVLYFHTSWAEPCKALKQVFEAISNEPSNSN---VSFLSIDADENS-------------- 66
Query: 100 FSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133
++ ELF++ +P+ +I+ + G +L +
Sbjct: 67 --------EISELFEISAVPYFIIIHK-GTILKE 91
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 35.8 bits (81), Expect = 0.034, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89
+YF ASWCGPCQ +P++ N S + +V+ + D + K Y
Sbjct: 30 VYFWASWCGPCQLMSPLINLAANTYSDR--LKVVKLEIDPNPTTVKKY 75
>pdb|3FKF|A Chain A, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|B Chain B, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|C Chain C, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
pdb|3FKF|D Chain D, Thiol-Disulfide Oxidoreductase From Bacteroides Fragilis
Nctc 9343
Length = 148
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK--MPWLAVP 99
L F ASWC P L + E + +F + +S D D EA++ K + W V
Sbjct: 38 LNFWASWCDPQPEANAELKRLNKEYKKNKNFAXLGISLDIDREAWETAIKKDTLSWDQVC 97
Query: 100 -FS--DSETRDKLDELFKVMGIPHLVILDENGKVLS 132
F+ SET + + ++ +P ++L GK+L+
Sbjct: 98 DFTGLSSETAKQ----YAILTLPTNILLSPTGKILA 129
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 13/90 (14%)
Query: 211 ASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF----KRDLGSMPW-LALPFKDKS 265
A+AE RL + Y+K ++F + ISLD + E++ K+D ++ W F S
Sbjct: 51 ANAELK-RLNKEYKK----NKNFAXLGISLDIDREAWETAIKKD--TLSWDQVCDFTGLS 103
Query: 266 REKLARYFELSTLPTLVIIGPDGKTLHSNV 295
E A+ + + TLPT +++ P GK L ++
Sbjct: 104 SET-AKQYAILTLPTNILLSPTGKILARDI 132
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 35.8 bits (81), Expect = 0.035, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 23 LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
++++ ++ +G + F A WCGPC+ P+L E+ E+ + +++ + DE+
Sbjct: 3 IVKATDQSFSAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDK--LKIVKIDVDEN 60
Query: 83 DEAFKGY 89
E Y
Sbjct: 61 QETAGKY 67
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 35.8 bits (81), Expect = 0.039, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMPWLAVPFSD 102
F A+WCGPC+ P+L E+ + +G +++ + DE+ Y +P L V F D
Sbjct: 27 FWATWCGPCKMIAPVLEELAADY--EGKADILKLDVDENPSTAAKYEVMSIPTLIV-FKD 83
Query: 103 SETRDKL 109
+ DK+
Sbjct: 84 GQPVDKV 90
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza
Sativa
Length = 130
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 44 FSASWCGPCQRFTPILAE 61
F+ASWCGPC+ P+ AE
Sbjct: 43 FTASWCGPCRFIAPVFAE 60
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
The Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
The Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 34 DSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
++ K + + F+ASWCGPC+ P+ A++ + +F+ D D+
Sbjct: 31 NTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN-----AVFLKVDVDE 75
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 35.8 bits (81), Expect = 0.040, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WCGP + PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 35.4 bits (80), Expect = 0.042, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 23 LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE- 81
L +++G V LD F A+WCGPC+ +P L E+ + + + V+ V DE
Sbjct: 20 LTKASGKLVVLD---------FFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDEC 68
Query: 82 DDEAFKGYFSKMP 94
+D A + S MP
Sbjct: 69 EDIAMEYNISSMP 81
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 21 DFLIRSNG-DQVKLDSLKGKIGLY---FSASWCGPCQRFTPILAEVYNELSRQGDFEVIF 76
D ++ NG + L+ +K GL F A+WCGPCQR IL + D I
Sbjct: 3 DPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIA---EANKDVTFIK 59
Query: 77 VSGDEDDEAFKGY-FSKMPWL 96
V D++ A Y S +P L
Sbjct: 60 VDVDKNGNAADAYGVSSIPAL 80
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
F A WCGPC+ F PI AE E R G + V+
Sbjct: 62 FWAPWCGPCRSFAPIFAETAAE--RAGKVRFVKVN 94
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 23 LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEV 62
L+ N D++ D K + LY+ A WCG C+R P E+
Sbjct: 363 LVGKNHDEIVNDPKKDVLVLYY-APWCGHCKRLAPTYQEL 401
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli
Thioredoxin With An Arginine Insertion In The Active
Site
Length = 109
Score = 35.4 bits (80), Expect = 0.047, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCG-PCQRFTPILAEVYNELSRQGDFEVIFV 77
D +I D D LK G I + F A WCG PC+ PIL E+ +E QG V +
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEY--QGKLTVAKL 59
Query: 78 SGDED 82
+ D++
Sbjct: 60 NIDQN 64
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84
F A WCGPC+ PIL E+ E + G + V+ D++ E
Sbjct: 58 FYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPE 96
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84
F A WCGPC+ PIL E+ E + G + V+ D++ E
Sbjct: 58 FYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPE 96
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89
F A+WCGP + P+L E+ E R D V + D + E + +
Sbjct: 34 FWATWCGPSKMVAPVLEEIATE--RATDLTVAKLDVDTNPETARNF 77
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 35.4 bits (80), Expect = 0.054, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 23 LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE- 81
L +++G V LD F A+WCGPC+ +P L E+ + + + V+ V DE
Sbjct: 15 LTKASGKLVVLD---------FFATWCGPCKMISPKLVELSTQFA--DNVVVLKVDVDEC 63
Query: 82 DDEAFKGYFSKMP 94
+D A + S MP
Sbjct: 64 EDIAMEYNISSMP 76
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 22 FLIRS-NGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYN-ELSRQGDFEVIFVSG 79
FL ++ G+ + + + K L+F SWC PC++ P Y+ S + +
Sbjct: 18 FLXKTIEGEDISIPNKGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVN 77
Query: 80 DEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130
E ++ F K L P +++ +L + + ++ IP +L+E G++
Sbjct: 78 SEQNQQVVEDFIKANKLTFPIV-LDSKGELXKEYHIITIPTSFLLNEKGEI 127
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From
Litopenaeus Vannamei
Length = 105
Score = 35.0 bits (79), Expect = 0.067, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A+WCGPC+ P L E+ +S +V+F+ D D+
Sbjct: 27 FYATWCGPCKMIAPKLEELSQSMS-----DVVFLKVDVDE 61
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 34.7 bits (78), Expect = 0.079, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYS-----NVIFLEVDVDD 61
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 10 DIQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQ 69
++Q + SS ++F++ S + + + F A WCGPC+ P++ E+ E S
Sbjct: 1 EVQDVNDSSWKEFVLES----------EVPVMVDFWAPWCGPCKLIAPVIDELAKEYS-- 48
Query: 70 GDFEVIFVSGDE 81
G V ++ DE
Sbjct: 49 GKIAVYKLNTDE 60
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
F A WCGPC+ +PIL E+ + G +V+ V+ DE
Sbjct: 57 FFAPWCGPCRLVSPILEELARD--HAGRLKVVKVNVDE 92
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYS-----NVIFLEVDVDD 61
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
FSA+WCGPC+ P + + S VIF+ D DD
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYS-----NVIFLEVDVDD 61
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 34 DSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89
D LK G + + F A WCGPC+ P L E+ E + G V V+ D++ E Y
Sbjct: 15 DVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFA--GKVTVAKVNIDDNPETPNAY 70
>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp
pdb|3KX2|A Chain A, Crystal Structure Of Prp43p In Complex With Adp
Length = 767
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 66 LSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP---------FSDSETRDKLDELFKVM 116
+ R+ D ++I +S D E F+ YF+ P LAVP ++ RD LD + +
Sbjct: 235 VKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTV 294
Query: 117 GIPHLVILDENGKVL-----SDGGVEIIREYGVEG 146
H +E G +L D + +R+ +EG
Sbjct: 295 LQIHAT--EEAGDILLFLTGEDEIEDAVRKISLEG 327
>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
pdb|2XAU|B Chain B, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In
Complex With Adp
Length = 773
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 66 LSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVP---------FSDSETRDKLDELFKVM 116
+ R+ D ++I +S D E F+ YF+ P LAVP ++ RD LD + +
Sbjct: 235 VKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTV 294
Query: 117 GIPHLVILDENGKVL-----SDGGVEIIREYGVEG 146
H +E G +L D + +R+ +EG
Sbjct: 295 LQIHAT--EEAGDILLFLTGEDEIEDAVRKISLEG 327
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 23 LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
++++ ++ +G + F A WCGP + P+L E+ E+ + +++ + DE+
Sbjct: 3 IVKATDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK--LKIVKIDVDEN 60
Query: 83 DEAFKGY 89
E Y
Sbjct: 61 QETAGKY 67
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 23 LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
++++ ++ +G + F A WCGP + P+L E+ E+ + +++ + DE+
Sbjct: 3 IVKATDQSFSAETSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK--LKIVKIDVDEN 60
Query: 83 DEAFKGY 89
E Y
Sbjct: 61 QETAGKY 67
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach,
Oxidized Form
Length = 104
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81
F A WCGPC+ P++ E+ E S G V ++ DE
Sbjct: 24 FWAPWCGPCKLIAPVIDELAKEYS--GKIAVYKLNTDE 59
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 35 SLKGKIGLY-FSASWCGPCQRFTPILAEV 62
S GKI L FSA WCGPC++ P E+
Sbjct: 43 SRDGKIVLANFSARWCGPCKQIAPYYIEL 71
>pdb|3HCZ|A Chain A, The Crystal Structure Of A Domain Of Possible
Thiol-disulfide Isomerase From Cytophaga Hutchinsonii
Atcc 33406
Length = 148
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMP---WLAV 98
L+F S CG CQ+ TP L + + + +R +V + + DE + + WL V
Sbjct: 36 LFFWDSQCGHCQQETPKLYDWWLK-NRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNV 94
Query: 99 PFSDSETRDKLDELFKVMGIPHLVILDENGKVLS 132
DS+ + + P L +LD+N +++
Sbjct: 95 --RDSKNHTDFKITYDIYATPVLYVLDKNKVIIA 126
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 33.5 bits (75), Expect = 0.21, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F+ASWC PC+ PI AE+ + V F+ D D+
Sbjct: 33 FTASWCPPCKMIAPIFAELAKKFP-----NVTFLKVDVDE 67
>pdb|4EVM|A Chain A, 1.5 Angstrom Crystal Structure Of Soluble Domain Of
Membrane-Anchored Thioredoxin Family Protein From
Streptococcus Pneumoniae Strain Canada Mdr_19a
Length = 138
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 39/135 (28%)
Query: 21 DF-LIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFV- 77
DF L+ +G +L KGK + L F ASWC C P E+ E D+ V+ V
Sbjct: 4 DFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD--DYVVLTVV 61
Query: 78 ----SGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133
G++ + FK ++ + + +P V++D +GK+L
Sbjct: 62 SPGHKGEQSEADFKNWYKGLDYKNLP----------------------VLVDPSGKLL-- 97
Query: 134 GGVEIIREYGVEGYP 148
YGV YP
Sbjct: 98 ------ETYGVRSYP 106
>pdb|1O4V|A Chain A, Crystal Structure Of The Catalytic Subunit Of A
Phosphoribosylaminoimidazole Mutase (Tm0446) From
Thermotoga Maritima At 1.77 A Resolution
Length = 183
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 90 FSKMPWLAVPFSDSETRDKLDELFKVM----GIPHLVILDENGKVLSDGGVEIIREYGVE 145
+ +P + VP S T + LD LF ++ G+P + N K + G+ G++
Sbjct: 89 ITHLPVIGVPVKTS-TLNGLDSLFSIVQMPGGVPVATVAINNAK---NAGILAASILGIK 144
Query: 146 GYPFTVERIKEMKEQEERAKREQSLR 171
YP ++KE KE+ +R E++ R
Sbjct: 145 -YPEIARKVKEYKERMKREVLEKAQR 169
>pdb|3RAZ|A Chain A, The Crystal Structure Of Thioredoxin-Related Protein
From Neisseria Meningitidis Serogroup B
Length = 151
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 33 LDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE 84
L SLK + + A+WCGPC++ P ++ Y + ++G + + ++ D D
Sbjct: 19 LQSLKAPVRIVNLWATWCGPCRKEXPAXSKWY-KAQKKGSVDXVGIALDTSDN 70
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 32.7 bits (73), Expect = 0.28, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 38 GKIGLYFSASWCGPCQRFTPILAE 61
G + + F A+WCGPC+ P+L E
Sbjct: 18 GPVLVDFWAAWCGPCRMMAPVLEE 41
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 32.7 bits (73), Expect = 0.31, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMPWLAV 98
I + F+ SWC PC++ P E+ +++ +GD ++ ++ ++ +P LA+
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMASQM--EGDIRFAYMDAEDAEKTMAELNIRTLPSLAL 77
Query: 99 PFSDSETRD 107
F D R+
Sbjct: 78 -FVDGMIRE 85
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 32.7 bits (73), Expect = 0.31, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 44 FSASWCGPCQRFTPILAEVYNELS 67
F+A+WCGPC+ P+ + N+ +
Sbjct: 31 FTATWCGPCKMIAPLFETLSNDYA 54
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 32.7 bits (73), Expect = 0.31, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 38 GKIGLYFSASWCGPCQRFTPILAE 61
G + + F A+WCGPC+ P+L E
Sbjct: 18 GPVLVDFWAAWCGPCRMMAPVLEE 41
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 32.7 bits (73), Expect = 0.31, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
FSA+WCGPC+ P + + S VIF+ D +D
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYS-----NVIFLEVDVND 61
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 44 FSASWCGPCQRFTPILAEVYNELS 67
F+A+WCGPC+ P+ + N+ +
Sbjct: 31 FTATWCGPCKMIAPLFETLSNDYA 54
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 44 FSASWCGPCQRFTP---ILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91
F A WCGPCQ F P +LA + R G + K Y S
Sbjct: 28 FYAPWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPS 78
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 23 LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPI---LAEVYNE 65
L+ N + V D K + + F A WCG C++ PI L E Y +
Sbjct: 254 LVGKNFEDVAFDE-KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKD 298
>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At 1.14
A
Length = 156
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 20/105 (19%)
Query: 35 SLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS-GDEDDEA--FKGYF 90
+ KGK+ L ASWC PC P+L EL + F+++ ++ D D A F G +
Sbjct: 39 AFKGKVSLVNVWASWCVPCHDEAPLL----TELGKDKRFQLVGINYKDAADNARRFLGRY 94
Query: 91 SKMPWLAVPFS----DSETRDKLDELFKVMGIPHLVILDENGKVL 131
PF D+ R ++ + V G+P ++ G ++
Sbjct: 95 GN------PFGRVGVDANGRASIE--WGVYGVPETFVVGREGTIV 131
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89
F A WC PC+ PIL E+ E +G V + DE+ + Y
Sbjct: 26 FWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVDENPKTAXRY 69
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89
F A WC PC+ PIL E+ E +G V + DE+ + Y
Sbjct: 25 FWAEWCAPCRXIAPILEEIAKEY--EGKLLVAKLDVDENPKTAXRY 68
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMPWLAVPFSD 102
F A+WCG C+ P+L E+ + +G +++ + DE+ Y +P L V F D
Sbjct: 27 FWATWCGTCKMIAPVLEELAADY--EGKADILKLDVDENPSTAAKYEVMSIPTLIV-FKD 83
Query: 103 SETRDKL 109
+ DK+
Sbjct: 84 GQPVDKV 90
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 32.3 bits (72), Expect = 0.41, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 44 FSASWCGPCQRFTPILAE 61
F A+WCGPC+ P+L E
Sbjct: 24 FWAAWCGPCRMMAPVLEE 41
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 32.3 bits (72), Expect = 0.43, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMPWLAVPFSD 102
F A+WCG C+ P+L E+ + +G +++ + DE+ Y +P L V F D
Sbjct: 26 FWATWCGSCKMIAPVLEELAADY--EGKADILKLDVDENPSTAAKYEVMSIPTLIV-FKD 82
Query: 103 SETRDKL 109
+ DK+
Sbjct: 83 GQPVDKV 89
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione
Mixed Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione
Mixed Disulfide Complex
Length = 109
Score = 32.3 bits (72), Expect = 0.44, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWL 96
F A+WCGP + P++ E ++E Q DF + V + D A K S MP L
Sbjct: 31 FYATWCGPSKMIAPMI-EKFSEQYPQADFYKLDVD-ELGDVAQKNEVSAMPTL 81
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 23/98 (23%)
Query: 37 KGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWL 96
K + L F A WCG C++F P ++E I + ++D P +
Sbjct: 34 KDTVLLEFYAPWCGHCKQFAP-------------EYEKIASTLKDND----------PPI 70
Query: 97 AVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134
AV D+ + L F V G P + IL + V DG
Sbjct: 71 AVAKIDATSASMLASKFDVSGYPTIKILKKGQAVDYDG 108
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 32.3 bits (72), Expect = 0.45, Method: Composition-based stats.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 44 FSASWCGPCQRFTPILAE 61
F A+WCGPC+ P+L E
Sbjct: 24 FWAAWCGPCRMMAPVLEE 41
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Mutant Human Thioredoxin
And A 13 Residue Peptide Comprising Its Target Site In
Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (c35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Nfkb (residues
56-68 Of The P50 Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Nfkb (Residues
56-68 Of The P50 Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Ref-1 (Residues
59-71 Of The P50 Subunit Of Nfkb), Nmr, Minimized
Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed
Disulfide Intermediate Between Human Thioredoxin (C35a,
C62a, C69a, C73a) Mutant And A 13 Residue Peptide
Comprising Its Target Site In Human Ref-1 (Residues
59-71 Of The P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 30 QVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
Q LD+ K+ + FSA+WCGP + P + + S VIF+ D DD
Sbjct: 12 QEALDAAGDKLVVVDFSATWCGPAKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange Protein,
Thioredoxin Family Protein From Chlorobium Tepidum Tls
Length = 165
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 35 SLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93
SLKGK + F A+WC PC+ P +V + +G F + ++ +E K Y
Sbjct: 31 SLKGKAYIVNFFATWCPPCRSEIPDXVQVQKTWASRG-FTFVGIAVNEQLPNVKNYXKTQ 89
Query: 94 PWLAVPFSDSETRDKLDELFK------VMGIPHLVILDENGKV 130
+ + +L F + GIP ++D +G V
Sbjct: 90 ---GIIYPVXXATPELIRAFNGYIDGGITGIPTSFVIDASGNV 129
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 32.0 bits (71), Expect = 0.47, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WC C+ PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 27 NGDQVKLDSLKGKIG-LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85
+G +SL GK L+F A WC CQ P++ +V + + + V+G + A
Sbjct: 14 DGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQV---AASHPEVTFVGVAGLDQVPA 70
Query: 86 FKGYFSKMPWLAVPFSD-SETRDKLDELFKVMGIPHLVILDENGKV 130
+ + +K P F+ ++T + F V P +D +G V
Sbjct: 71 MQEFVNKYP--VKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNV 114
>pdb|2JU5|A Chain A, Dsbh Oxidoreductase
Length = 154
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 25/105 (23%)
Query: 40 IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAV 98
IGL+F+ S WC C ++ +++ + +F+ F G M +
Sbjct: 50 IGLFFTGSDWCMWC-------IKMQDQILQSSEFK-----------HFAGVHLHMVEVDF 91
Query: 99 PFSDS---ETRDKLDEL---FKVMGIPHLVILDENGKVLSDGGVE 137
P + E R K EL +KV G P LV +D GK L+ G E
Sbjct: 92 PQKNHQPEEQRQKNQELKAQYKVTGFPELVFIDAEGKQLARMGFE 136
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 16 SSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPI---LAEVYNE 65
SS L+ N + V D K + + F A WCG C++ PI L E Y +
Sbjct: 5 SSGPVKVLVGKNFEDVAFDE-KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKD 56
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 27 NGDQVKLDSLKGKIG-LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEA 85
+G +SL GK L+F A WC CQ P++ +V + + + V+G + A
Sbjct: 28 DGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQV---AASHPEVTFVGVAGLDQVPA 84
Query: 86 FKGYFSKMPWLAVPFSD-SETRDKLDELFKVMGIPHLVILDENGKV 130
+ + +K P F+ ++T + F V P +D +G V
Sbjct: 85 MQEFVNKYP--VKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNV 128
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 32.0 bits (71), Expect = 0.56, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A WCGPC+R P E ++ ++F+ D D+
Sbjct: 33 FFAEWCGPCKRIAPFYEECSKTYTK-----MVFIKVDVDE 67
>pdb|2EGG|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Geobacillus Kaustophilus
pdb|2EGG|B Chain B, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From
Geobacillus Kaustophilus
Length = 297
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 29/185 (15%)
Query: 86 FKGYFSKMPWL-AVPFSDSETRDKLDELFKVMGIP---HLVILDENGKVLSDGGVEIIRE 141
F+G+ K+ L P S + ++ F +GIP HL + E G+V + +R
Sbjct: 18 FQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSV-EPGQV--GAAIAGVRA 74
Query: 142 YGVEGYPFTVER----IKEMKEQEERAKREQSLRSVLTSHSR-----------------D 180
G+ G T+ I + E +E A+R ++ +++ + R +
Sbjct: 75 LGIAGVNVTIPHKLAVIPFLDEVDEHARRIGAVNTIINNDGRLVGYNTDGLGYVQALEEE 134
Query: 181 FVISSDGRKISVSDLEGKTIGLYFSMSSYKA-SAEFTPRLVEVYEKLKGKGESFEIVLIS 239
I+ DG++I V G G+YFS+ S A + R VE E+L +G+ S
Sbjct: 135 MNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFS 194
Query: 240 LDDEE 244
L + E
Sbjct: 195 LAEAE 199
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 32.0 bits (71), Expect = 0.58, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 44 FSASWCGPCQRFTPILAEVYNE 65
F A WCGPC+ PI+ E+ E
Sbjct: 26 FWAPWCGPCRMIAPIIEELAKE 47
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 32.0 bits (71), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 30 QVKLDSLKGKIGLY-FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
Q LD+ K+ + FSA+WCGP + P + + S VIF+ D DD
Sbjct: 12 QEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 32.0 bits (71), Expect = 0.58, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 17/89 (19%)
Query: 11 IQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQG 70
+ L S+S D + S V +D F A+WCGPC+ P++ + + S
Sbjct: 9 VTQLKSASEYDSALASGDKLVVVD---------FFATWCGPCKMIAPMIEKFAEQYS--- 56
Query: 71 DFEVIFVSGDED---DEAFKGYFSKMPWL 96
+ F D D D A K S MP L
Sbjct: 57 --DAAFYKLDVDEVSDVAQKAEVSSMPTL 83
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 44 FSASWCGPCQRFTPI---LAEVYNEL 66
FSA+WCGPC+ P L+E Y+ +
Sbjct: 27 FSATWCGPCKMIKPFFHSLSEKYSNV 52
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 31.6 bits (70), Expect = 0.67, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED---DEAFKGYFSKMPWL 96
F A+WCGPC+ P++ + + S + F D D D A K S MP L
Sbjct: 26 FFATWCGPCKMIAPMIEKFAEQYS-----DAAFYKLDVDEVSDVAQKAEVSSMPTL 76
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 31.6 bits (70), Expect = 0.74, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMP 94
F A WCGPC+ P + + E+ + E V D+++EA Y + MP
Sbjct: 26 FFAQWCGPCRNIAPKVEALAKEIP---EVEFAKVDVDQNEEAAAKYSVTAMP 74
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 31.6 bits (70), Expect = 0.77, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 44 FSASWCGPCQRFTPILAEVYNE 65
F A WCGPC+ P++ E+ E
Sbjct: 26 FWAPWCGPCRIIAPVVDEIAGE 47
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex
With The Target Protein Basi
Length = 125
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 34 DSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
++ K + + F+ASWCGP + P+ A++ + +F+ D D+
Sbjct: 34 NTAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPN-----AVFLKVDVDE 78
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 31.2 bits (69), Expect = 0.81, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
F A+WCGPC++ P L + E + E++ ++ DE+
Sbjct: 30 FWAAWCGPCRQIAPSLEAIAAEYGDK--IEIVKLNIDEN 66
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 31.2 bits (69), Expect = 0.91, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 39 KIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
K+ + F A+WCGPC+ P L ++ Q +V FV D D+
Sbjct: 32 KLVIDFYATWCGPCKMMQPHLTKLI-----QAYPDVRFVKCDVDE 71
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 18/78 (23%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGP--------------CQRFTPILAEVYN 64
D +I D D LK G I + F A WCGP C+ PIL E+ +
Sbjct: 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIAD 62
Query: 65 ELSRQGDFEVIFVSGDED 82
E QG V ++ D++
Sbjct: 63 EY--QGKLTVAKLNIDQN 78
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 57/148 (38%), Gaps = 34/148 (22%)
Query: 37 KGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWL 96
K + L F A WCG C++F P ++ N L K P +
Sbjct: 32 KDTVLLEFYAPWCGHCKQFAPEYEKIANILK-----------------------DKDPPI 68
Query: 97 AVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKE 156
V D+ + L F V G P + IL + G+ + G E V +++E
Sbjct: 69 PVAKIDATSASVLASRFDVSGYPTIKIL-KKGQAVDYEGSRTQEE--------IVAKVRE 119
Query: 157 MKEQEERAKREQSLRSVLTSHSRDFVIS 184
+ + + E +L VLT + D V++
Sbjct: 120 VSQPDWTPPPEVTL--VLTKENFDEVVN 145
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 23 LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQ 69
L + N D+V D+ I + F A WCG C++ P + ELS++
Sbjct: 135 LTKENFDEVVNDA--DIILVEFYAPWCGHCKKLAPEYEKAAKELSKR 179
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
FSA+WCGP + P + + S VIF+ D DD
Sbjct: 38 FSATWCGPSKMIKPFFHSLSEKYSN-----VIFLEVDVDD 72
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
FSA+WCGP + P + + S VIF+ D DD
Sbjct: 27 FSATWCGPSKMIKPFFHSLSEKYSN-----VIFLEVDVDD 61
>pdb|3GTY|X Chain X, Promiscuous Substrate Recognition In Folding And Assembly
Activities Of The Trigger Factor Chaperone
Length = 433
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 22/137 (16%)
Query: 174 LTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRL--VEVYEKL----- 226
LTS ++VIS D + V DL GK G + ++T +L EVY++
Sbjct: 175 LTSREYEYVISEDEDRPFVKDLVGKKKGDVVEIEREYEGKKYTYKLEVEEVYKRTLPEIG 234
Query: 227 ----KGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLV 282
K FE +L+ +ES K++ + + K+ RE+L L LP +V
Sbjct: 235 DELAKSVNNEFE----TLEQLKESLKKEGKEI--YDVEMKESMREQL-----LEKLPEIV 283
Query: 283 IIGPDGKTLHSNVAEAI 299
I +TL V EAI
Sbjct: 284 EIEISDRTLEILVNEAI 300
>pdb|3GU0|A Chain A, Promiscuous Substrate Recognition In Folding And Assembly
Activities Of The Trigger Factor Chaperone
Length = 412
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 22/137 (16%)
Query: 174 LTSHSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRL--VEVYEKL----- 226
LTS ++VIS D + V DL GK G + ++T +L EVY++
Sbjct: 175 LTSREYEYVISEDEDRPFVKDLVGKKKGDVVEIEREYEGKKYTYKLEVEEVYKRTLPEIG 234
Query: 227 ----KGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLV 282
K FE +L+ +ES K++ + + K+ RE+L L LP +V
Sbjct: 235 DELAKSVNNEFE----TLEQLKESLKKEGKEI--YDVEMKESMREQL-----LEKLPEIV 283
Query: 283 IIGPDGKTLHSNVAEAI 299
I +TL V EAI
Sbjct: 284 EIEISDRTLEILVNEAI 300
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 44 FSASWCGPCQRFTP 57
F A WCG CQR TP
Sbjct: 42 FYAPWCGHCQRLTP 55
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 37 KGKIGLY-FSASWCGPCQRFTPILAEVYNE 65
K KI + F A WC PC P++ E+ N+
Sbjct: 22 KNKIVVVDFWAEWCAPCLILAPVIEELAND 51
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMPWLAVPFSD 102
F A+ CGPC+ P+L E+ + +G +++ + DE+ Y +P L V F D
Sbjct: 26 FWATACGPCKMIAPVLEELAADY--EGKADILKLDVDENPSTAAKYEVMSIPTLIV-FKD 82
Query: 103 SETRDKL 109
+ DK+
Sbjct: 83 GQPVDKV 89
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 44 FSASWCGPCQRFTPILAEV 62
F A+WCGPC+ P+ ++
Sbjct: 40 FWATWCGPCKMIGPVFEKI 58
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 12/72 (16%)
Query: 10 DIQSLLSSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQ 69
++Q + SS ++F++ S + + + F A WCGP + P++ E+ E S
Sbjct: 1 EVQDVNDSSWKEFVLES----------EVPVMVDFWAPWCGPSKLIAPVIDELAKEYS-- 48
Query: 70 GDFEVIFVSGDE 81
G V ++ DE
Sbjct: 49 GKIAVYKLNTDE 60
>pdb|3HA9|A Chain A, The 1.7a Crystal Structure Of A Thioredoxin-like Protein
From Aeropyrum Pernix
Length = 165
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 24/131 (18%)
Query: 23 LIRSNGDQVKLDSLKGKIG-LYFSASWCGPCQRFTPI---LAEVYNELSRQG-DF---EV 74
L +G+ + L+++ G + L+F A+WC C + L E Y E+S DF E
Sbjct: 22 LTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEA 81
Query: 75 IFVSG--------DEDDEAFKGYFSKM---PWLAVPFSDSETRDKLDELFKVMGIPHLVI 123
+ G + E F+ + + W+ V S L E F V I ++VI
Sbjct: 82 LKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDGS-----LVEKFNVRSIDYIVI 136
Query: 124 LDENGKVLSDG 134
+D++ VL G
Sbjct: 137 MDKSSNVLYAG 147
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli
Trxa (Caca)
Length = 108
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 21 DFLIRSNGDQVKLDSLK--GKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78
D +I D D LK G I + F A WC + PIL E+ +E QG V ++
Sbjct: 2 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEY--QGKLTVAKLN 59
Query: 79 GDED 82
D++
Sbjct: 60 IDQN 63
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQG 70
F A WC PC PI+ E+ + + G
Sbjct: 23 FWAEWCAPCLILAPIIEELAEDYPQVG 49
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A WCG C++ PI + + Q D + + +D
Sbjct: 32 FYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAND 71
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY-FSKMPWLAVPFSD 102
F A+WCG + P+L E+ + +G +++ + DE+ Y +P L V F D
Sbjct: 27 FWATWCGTSKMIAPVLEELAAD--YEGKADILKLDVDENPSTAAKYEVMSIPTLIV-FKD 83
Query: 103 SETRDKL 109
+ DK+
Sbjct: 84 GQPVDKV 90
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain
Of Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQ 69
F A WCG C++ P + ELS++
Sbjct: 31 FYAPWCGHCKKLAPEYEKAAKELSKR 56
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
Dehydrogenase From Porcine Heart Mitochondria
Length = 413
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 20/115 (17%)
Query: 240 LDDEEESFKRDLGSMPWLALPFK-DKSREKLARYFELSTLPTLVIIGPDGKTL-----HS 293
+DD + G W + D + LA+ F L T V++ PDGKT+ H
Sbjct: 251 IDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSVLVCPDGKTIEAEAAHG 310
Query: 294 NVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEE-------------SQTLESVLV 335
V EH G P + A + R E +QTLE V V
Sbjct: 311 TVTRHYREHQKGR-PTSTNPIASIFAWTRGLEHRGKLDGNQDLIRFAQTLEKVCV 364
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 35 SLKGKIGLY-FSASWCGPCQRFTPILAEV 62
S GKI L FSA WCGP ++ P E+
Sbjct: 43 SRDGKIVLANFSARWCGPSRQIAPYYIEL 71
>pdb|2FHX|A Chain A, Pseudomonas Aeruginosa Spm-1 Metallo-Beta-Lactamase
pdb|2FHX|B Chain B, Pseudomonas Aeruginosa Spm-1 Metallo-Beta-Lactamase
Length = 246
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 99 PFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVE---RIK 155
PF + T+ +D + K M +V ++ + + GG EI ++ G E + + R++
Sbjct: 48 PFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTGGNEIYKKMGAETWSSDLTKQLRLE 107
Query: 156 EMKEQEERA----KREQSLRSVLTSH 177
E K+ +A K E R +L+SH
Sbjct: 108 ENKKDRIKAAEFYKNEDLKRRILSSH 133
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103
FS C CQ+ TP+L E+ L+ + F +V +E+ F+ + K + F D
Sbjct: 29 FSRKNCHVCQKVTPVLEEL--RLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDG 86
Query: 104 ETRDK 108
E + K
Sbjct: 87 EYKGK 91
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 23 LIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82
++ N D++ +++ + + F A WCG C+ P E+ +LS+ + + + +
Sbjct: 357 VVAENFDEI-VNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN 415
Query: 83 D 83
D
Sbjct: 416 D 416
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQG 70
F A WCG C+ P A+ +L +G
Sbjct: 31 FYAPWCGHCKALAPEYAKAAGKLKAEG 57
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain
Of Human Protein Disulfide-Isomerase A3
Length = 142
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83
F A WCG C+ P E+ +LS+ + + + +D
Sbjct: 52 FYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND 91
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 29/66 (43%)
Query: 131 LSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKI 190
L+DG + E G P + + E +R+ L H DF ISSDG +
Sbjct: 21 LADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDFEISSDGTAM 80
Query: 191 SVSDLE 196
+ SD+E
Sbjct: 81 NKSDVE 86
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From
Saccharomyces Cerevisiae In Complex With Thioredoxin
Trx2
Length = 112
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED---DEAFKGYFSKMPWL 96
F A+WCGP + P++ + + S + F D D D A K S MP L
Sbjct: 34 FFATWCGPSKMIAPMIEKFAEQYS-----DAAFYKLDVDEVSDVAQKAEVSSMPTL 84
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae
In Complex With Trx2
Length = 104
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED---DEAFKGYFSKMPWL 96
F A+WCGP + P++ + + S + F D D D A K S MP L
Sbjct: 26 FFATWCGPSKMIAPMIEKFAEQYS-----DAAFYKLDVDEVSDVAQKAEVSSMPTL 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,499,122
Number of Sequences: 62578
Number of extensions: 450281
Number of successful extensions: 1705
Number of sequences better than 100.0: 181
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1497
Number of HSP's gapped (non-prelim): 221
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 52 (24.6 bits)