Query 018808
Match_columns 350
No_of_seqs 270 out of 3554
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:12:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03009 TryX_like_TryX_NRX Try 99.9 8.3E-26 1.8E-30 179.6 13.6 130 180-309 1-131 (131)
2 cd03008 TryX_like_RdCVF Trypar 99.9 2E-25 4.2E-30 177.6 10.7 120 188-307 16-142 (146)
3 cd02964 TryX_like_family Trypa 99.9 4.9E-24 1.1E-28 169.6 13.1 127 182-309 3-132 (132)
4 cd03009 TryX_like_TryX_NRX Try 99.9 3.2E-23 6.9E-28 164.8 12.0 129 21-149 1-131 (131)
5 PTZ00056 glutathione peroxidas 99.9 2.3E-22 4.9E-27 170.3 12.0 122 173-297 14-164 (199)
6 PF08534 Redoxin: Redoxin; In 99.9 1.6E-22 3.5E-27 163.8 10.6 121 174-298 2-135 (146)
7 cd03008 TryX_like_RdCVF Trypar 99.9 1.1E-22 2.4E-27 161.8 9.3 118 28-146 15-141 (146)
8 cd02964 TryX_like_family Trypa 99.9 7.9E-22 1.7E-26 156.8 11.3 127 22-149 2-132 (132)
9 PLN02399 phospholipid hydroper 99.9 1E-21 2.2E-26 168.7 12.7 124 171-297 72-220 (236)
10 cd03012 TlpA_like_DipZ_like Tl 99.9 7.1E-22 1.5E-26 155.8 9.8 107 187-296 13-124 (126)
11 cd02967 mauD Methylamine utili 99.9 3.5E-21 7.5E-26 149.2 12.2 111 179-295 1-113 (114)
12 cd00340 GSH_Peroxidase Glutath 99.9 1.1E-21 2.3E-26 159.9 9.2 117 178-298 2-143 (152)
13 PLN02412 probable glutathione 99.9 2.1E-21 4.6E-26 160.2 11.1 120 176-298 7-151 (167)
14 PRK15412 thiol:disulfide inter 99.9 2.4E-21 5.3E-26 162.8 11.1 120 172-298 39-163 (185)
15 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 1.8E-21 4E-26 153.0 9.5 116 174-293 1-124 (124)
16 cd03010 TlpA_like_DsbE TlpA-li 99.9 2.3E-21 5E-26 153.2 9.8 116 177-298 2-121 (127)
17 PRK03147 thiol-disulfide oxido 99.9 7.4E-21 1.6E-25 158.6 13.3 124 171-297 34-158 (173)
18 PF13905 Thioredoxin_8: Thiore 99.9 7.4E-21 1.6E-25 142.3 11.3 93 197-290 1-95 (95)
19 PRK00522 tpx lipid hydroperoxi 99.8 1.4E-20 3E-25 155.5 12.3 120 173-297 19-150 (167)
20 cd03015 PRX_Typ2cys Peroxiredo 99.8 2.9E-20 6.2E-25 154.8 12.8 121 174-297 1-139 (173)
21 cd03014 PRX_Atyp2cys Peroxired 99.8 3.3E-20 7E-25 149.7 12.6 119 174-297 2-129 (143)
22 PRK14018 trifunctional thiored 99.8 3E-20 6.5E-25 175.8 14.2 122 173-298 33-160 (521)
23 PRK09437 bcp thioredoxin-depen 99.8 2.9E-20 6.3E-25 151.9 12.0 120 173-296 5-138 (154)
24 cd03017 PRX_BCP Peroxiredoxin 99.8 2.3E-20 4.9E-25 150.1 10.6 118 177-298 2-130 (140)
25 TIGR00385 dsbE periplasmic pro 99.8 1.9E-20 4.2E-25 155.8 10.4 119 172-297 34-157 (173)
26 PTZ00256 glutathione peroxidas 99.8 4.5E-20 9.8E-25 154.7 12.7 121 175-297 17-167 (183)
27 KOG2501 Thioredoxin, nucleored 99.8 3.2E-20 7E-25 145.8 10.8 122 182-303 17-141 (157)
28 TIGR02661 MauD methylamine deh 99.8 4.5E-20 9.7E-25 155.5 12.1 115 172-294 46-163 (189)
29 TIGR03137 AhpC peroxiredoxin. 99.8 5E-20 1.1E-24 155.0 11.9 121 173-296 3-137 (187)
30 cd02969 PRX_like1 Peroxiredoxi 99.8 1.1E-19 2.4E-24 151.1 13.8 118 175-295 1-127 (171)
31 cd03018 PRX_AhpE_like Peroxire 99.8 7.3E-20 1.6E-24 148.7 11.6 121 174-298 3-134 (149)
32 TIGR02540 gpx7 putative glutat 99.8 6.2E-20 1.3E-24 149.7 10.6 115 180-297 4-139 (153)
33 PF08534 Redoxin: Redoxin; In 99.8 1.9E-19 4.2E-24 145.7 13.1 116 15-134 2-131 (146)
34 PRK10382 alkyl hydroperoxide r 99.8 1.9E-19 4.2E-24 150.3 12.9 122 172-296 2-137 (187)
35 COG1225 Bcp Peroxiredoxin [Pos 99.8 3.7E-19 8E-24 141.5 12.5 119 173-295 5-137 (157)
36 cd02967 mauD Methylamine utili 99.8 4.9E-19 1.1E-23 137.1 12.6 109 20-134 1-112 (114)
37 PF00578 AhpC-TSA: AhpC/TSA fa 99.8 3.7E-19 7.9E-24 139.9 11.1 114 15-132 1-123 (124)
38 cd02971 PRX_family Peroxiredox 99.8 5.4E-19 1.2E-23 142.0 11.7 119 178-299 2-131 (140)
39 PRK13190 putative peroxiredoxi 99.8 5E-19 1.1E-23 150.4 11.6 121 173-296 3-135 (202)
40 PRK13599 putative peroxiredoxi 99.8 6.5E-19 1.4E-23 150.5 11.7 122 173-296 3-137 (215)
41 cd02970 PRX_like2 Peroxiredoxi 99.8 6.8E-19 1.5E-23 142.9 10.2 115 178-296 2-148 (149)
42 cd02968 SCO SCO (an acronym fo 99.8 8.3E-19 1.8E-23 141.3 10.4 117 178-295 2-141 (142)
43 cd02966 TlpA_like_family TlpA- 99.8 1.2E-18 2.6E-23 134.5 10.9 112 182-296 4-116 (116)
44 cd03010 TlpA_like_DsbE TlpA-li 99.8 1E-18 2.2E-23 138.0 10.4 112 17-133 1-116 (127)
45 TIGR02187 GlrX_arch Glutaredox 99.8 1.4E-17 3.1E-22 143.3 18.4 175 36-289 17-197 (215)
46 PRK15412 thiol:disulfide inter 99.8 4E-18 8.6E-23 143.3 13.7 116 12-133 38-158 (185)
47 PF13905 Thioredoxin_8: Thiore 99.8 3.5E-18 7.6E-23 127.8 12.0 92 38-130 1-95 (95)
48 PRK15000 peroxidase; Provision 99.8 2E-18 4.3E-23 146.3 11.7 123 173-297 3-144 (200)
49 PLN02399 phospholipid hydroper 99.8 1.7E-18 3.6E-23 148.9 11.3 121 11-133 71-216 (236)
50 PRK13191 putative peroxiredoxi 99.8 2.7E-18 6E-23 146.8 11.9 123 173-297 8-143 (215)
51 cd03016 PRX_1cys Peroxiredoxin 99.8 4.7E-18 1E-22 144.8 13.1 121 174-297 1-136 (203)
52 cd03011 TlpA_like_ScsD_MtbDsbE 99.8 2.5E-18 5.5E-23 134.9 10.3 110 179-297 1-112 (123)
53 cd00340 GSH_Peroxidase Glutath 99.8 9.8E-19 2.1E-23 142.4 8.1 113 18-133 1-138 (152)
54 PTZ00137 2-Cys peroxiredoxin; 99.8 5.1E-18 1.1E-22 147.7 12.7 124 171-296 67-206 (261)
55 PLN02919 haloacid dehalogenase 99.8 3.7E-18 8.1E-23 176.6 13.7 123 172-297 391-522 (1057)
56 PTZ00102 disulphide isomerase; 99.8 3.7E-17 8E-22 158.0 19.5 77 196-296 374-450 (477)
57 PTZ00056 glutathione peroxidas 99.8 4.1E-18 8.9E-23 144.3 11.0 120 13-134 13-161 (199)
58 TIGR01626 ytfJ_HI0045 conserve 99.8 2.4E-18 5.2E-23 141.8 9.2 107 185-298 47-167 (184)
59 PLN02412 probable glutathione 99.8 2.5E-18 5.4E-23 141.9 9.1 115 17-133 7-146 (167)
60 PRK03147 thiol-disulfide oxido 99.8 2.1E-17 4.6E-22 137.7 13.9 117 14-133 36-154 (173)
61 cd02969 PRX_like1 Peroxiredoxi 99.8 2.9E-17 6.2E-22 136.6 14.6 116 16-134 1-126 (171)
62 TIGR02661 MauD methylamine deh 99.7 1.5E-17 3.2E-22 140.2 12.8 112 14-133 47-162 (189)
63 PTZ00253 tryparedoxin peroxida 99.7 1.7E-17 3.7E-22 141.0 13.3 122 173-297 7-146 (199)
64 cd03012 TlpA_like_DipZ_like Tl 99.7 8.4E-18 1.8E-22 132.5 10.1 104 27-133 12-121 (126)
65 PRK00522 tpx lipid hydroperoxi 99.7 1.2E-17 2.6E-22 137.9 11.3 117 14-134 19-147 (167)
66 PRK13189 peroxiredoxin; Provis 99.7 1.9E-17 4.2E-22 142.4 12.9 121 173-296 10-144 (222)
67 PRK14018 trifunctional thiored 99.7 7.4E-17 1.6E-21 152.9 17.5 134 13-161 32-172 (521)
68 cd03014 PRX_Atyp2cys Peroxired 99.7 1.6E-17 3.5E-22 134.0 11.0 115 15-133 2-125 (143)
69 TIGR00385 dsbE periplasmic pro 99.7 1E-17 2.2E-22 139.3 9.6 115 13-133 34-153 (173)
70 PRK13728 conjugal transfer pro 99.7 1.7E-17 3.6E-22 135.9 10.6 101 177-298 54-158 (181)
71 cd03018 PRX_AhpE_like Peroxire 99.7 8.5E-17 1.8E-21 130.7 13.5 117 15-133 3-129 (149)
72 PRK09437 bcp thioredoxin-depen 99.7 1.1E-16 2.3E-21 130.8 11.6 116 14-133 5-135 (154)
73 cd03017 PRX_BCP Peroxiredoxin 99.7 8.5E-17 1.8E-21 129.2 10.9 113 17-133 1-125 (140)
74 cd03015 PRX_Typ2cys Peroxiredo 99.7 3.7E-16 8.1E-21 130.0 13.9 117 15-134 1-136 (173)
75 PTZ00256 glutathione peroxidas 99.7 7.4E-17 1.6E-21 135.3 9.0 121 10-133 12-163 (183)
76 KOG2501 Thioredoxin, nucleored 99.7 1.3E-16 2.9E-21 125.5 8.9 119 25-144 19-142 (157)
77 cd02950 TxlA TRX-like protein 99.7 3.9E-16 8.5E-21 125.1 11.8 105 195-337 18-122 (142)
78 PRK10606 btuE putative glutath 99.7 5.4E-16 1.2E-20 128.7 12.2 117 177-297 4-165 (183)
79 TIGR03137 AhpC peroxiredoxin. 99.7 2.2E-16 4.7E-21 132.9 9.8 117 14-133 3-134 (187)
80 cd02966 TlpA_like_family TlpA- 99.7 6.5E-16 1.4E-20 119.1 11.7 110 21-133 1-113 (116)
81 cd02968 SCO SCO (an acronym fo 99.7 4.7E-16 1E-20 125.2 11.0 116 18-133 1-139 (142)
82 TIGR02540 gpx7 putative glutat 99.7 3E-16 6.5E-21 127.9 8.6 112 20-133 3-135 (153)
83 cd02971 PRX_family Peroxiredox 99.7 9.8E-16 2.1E-20 123.0 10.8 114 18-134 1-126 (140)
84 cd02985 TRX_CDSP32 TRX family, 99.6 2E-15 4.3E-20 114.4 10.4 78 195-297 13-90 (103)
85 TIGR02738 TrbB type-F conjugat 99.6 8.2E-16 1.8E-20 124.0 8.7 91 187-297 44-139 (153)
86 cd02954 DIM1 Dim1 family; Dim1 99.6 1.4E-15 3E-20 115.3 9.0 76 196-298 13-88 (114)
87 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 1.9E-15 4.2E-20 118.5 10.2 105 20-133 1-108 (123)
88 PRK13190 putative peroxiredoxi 99.6 1.5E-15 3.3E-20 129.1 10.2 117 14-133 3-132 (202)
89 PRK13599 putative peroxiredoxi 99.6 1.8E-15 3.9E-20 129.4 10.6 118 14-133 3-134 (215)
90 COG1225 Bcp Peroxiredoxin [Pos 99.6 5.1E-15 1.1E-19 117.9 11.6 116 14-133 5-135 (157)
91 PLN02919 haloacid dehalogenase 99.6 2.3E-15 4.9E-20 156.1 11.9 116 15-133 393-518 (1057)
92 cd02970 PRX_like2 Peroxiredoxi 99.6 4.6E-15 1E-19 120.3 10.7 112 18-133 1-145 (149)
93 PRK13728 conjugal transfer pro 99.6 2.9E-15 6.4E-20 122.7 9.4 98 16-132 52-151 (181)
94 cd03013 PRX5_like Peroxiredoxi 99.6 3.9E-15 8.4E-20 121.2 10.0 120 174-297 1-140 (155)
95 PRK10382 alkyl hydroperoxide r 99.6 6.4E-15 1.4E-19 123.1 10.9 117 14-133 3-134 (187)
96 TIGR01626 ytfJ_HI0045 conserve 99.6 9.7E-15 2.1E-19 120.5 11.2 112 14-133 24-162 (184)
97 COG0450 AhpC Peroxiredoxin [Po 99.6 1.8E-14 3.8E-19 117.2 11.7 123 172-296 3-142 (194)
98 KOG0191 Thioredoxin/protein di 99.6 1.2E-13 2.5E-18 129.4 18.0 180 40-289 50-230 (383)
99 KOG0910 Thioredoxin-like prote 99.6 8.4E-15 1.8E-19 114.3 8.3 75 197-298 61-135 (150)
100 KOG0190 Protein disulfide isom 99.6 5.1E-14 1.1E-18 131.2 15.0 88 18-130 22-111 (493)
101 PRK15000 peroxidase; Provision 99.6 1.2E-14 2.7E-19 123.1 9.8 118 14-133 3-140 (200)
102 PTZ00253 tryparedoxin peroxida 99.6 2.8E-14 6.1E-19 121.3 11.1 118 14-133 7-142 (199)
103 cd02999 PDI_a_ERp44_like PDIa 99.6 1.8E-14 3.9E-19 108.4 8.7 75 194-296 15-89 (100)
104 cd03016 PRX_1cys Peroxiredoxin 99.6 1.1E-13 2.3E-18 118.0 14.3 116 15-133 1-132 (203)
105 PHA02278 thioredoxin-like prot 99.5 2.6E-14 5.6E-19 107.6 9.0 79 196-297 13-91 (103)
106 PTZ00137 2-Cys peroxiredoxin; 99.5 3.1E-14 6.6E-19 124.2 10.7 118 14-133 69-203 (261)
107 PRK13191 putative peroxiredoxi 99.5 3.5E-14 7.5E-19 121.5 10.8 117 14-133 8-139 (215)
108 PRK13189 peroxiredoxin; Provis 99.5 4.7E-14 1E-18 121.4 10.6 117 14-133 10-141 (222)
109 cd02956 ybbN ybbN protein fami 99.5 7.5E-14 1.6E-18 104.4 9.9 74 196-296 11-84 (96)
110 cd02963 TRX_DnaJ TRX domain, D 99.5 8.5E-14 1.8E-18 106.9 10.0 76 195-296 22-97 (111)
111 cd02948 TRX_NDPK TRX domain, T 99.5 8.9E-14 1.9E-18 105.2 9.9 75 196-297 16-90 (102)
112 PF02630 SCO1-SenC: SCO1/SenC; 99.5 8.7E-14 1.9E-18 115.5 10.7 122 174-295 28-172 (174)
113 cd03003 PDI_a_ERdj5_N PDIa fam 99.5 9.2E-14 2E-18 105.0 9.0 75 195-296 16-90 (101)
114 cd02951 SoxW SoxW family; SoxW 99.5 1.4E-13 3.1E-18 108.2 10.1 89 196-297 12-105 (125)
115 PRK10606 btuE putative glutath 99.5 6.2E-13 1.3E-17 110.5 14.1 76 17-94 3-88 (183)
116 PLN00410 U5 snRNP protein, DIM 99.5 4E-13 8.7E-18 105.9 11.2 113 196-341 22-136 (142)
117 TIGR02740 TraF-like TraF-like 99.5 1E-13 2.2E-18 122.8 8.7 92 188-296 157-249 (271)
118 COG3118 Thioredoxin domain-con 99.5 2E-13 4.2E-18 118.1 8.8 77 195-298 41-117 (304)
119 cd02953 DsbDgamma DsbD gamma f 99.5 3.8E-13 8.3E-18 102.1 9.6 80 196-297 10-93 (104)
120 cd02954 DIM1 Dim1 family; Dim1 99.5 4.3E-13 9.4E-18 101.7 9.5 70 37-133 13-83 (114)
121 cd02962 TMX2 TMX2 family; comp 99.5 2.5E-13 5.5E-18 109.2 8.4 92 196-313 46-143 (152)
122 cd03006 PDI_a_EFP1_N PDIa fami 99.5 4.4E-13 9.6E-18 102.6 9.3 74 196-296 28-102 (113)
123 PTZ00062 glutaredoxin; Provisi 99.5 1.4E-12 3E-17 109.8 13.0 58 40-133 20-77 (204)
124 cd02985 TRX_CDSP32 TRX family, 99.4 5E-13 1.1E-17 101.2 9.2 73 36-133 13-86 (103)
125 PF13098 Thioredoxin_2: Thiore 99.4 4.6E-13 1E-17 103.1 8.6 99 196-297 4-102 (112)
126 PRK09381 trxA thioredoxin; Pro 99.4 1.1E-12 2.4E-17 100.5 10.3 74 197-297 21-94 (109)
127 cd02950 TxlA TRX-like protein 99.4 3.9E-13 8.5E-18 107.7 8.0 84 26-133 6-92 (142)
128 KOG0907 Thioredoxin [Posttrans 99.4 4.2E-13 9.1E-18 101.0 7.5 74 197-298 21-94 (106)
129 cd02986 DLP Dim1 family, Dim1- 99.4 8.5E-13 1.8E-17 99.3 8.6 96 196-322 13-108 (114)
130 cd03004 PDI_a_ERdj5_C PDIa fam 99.4 1.4E-12 3E-17 99.1 9.6 74 197-296 19-92 (104)
131 cd02999 PDI_a_ERp44_like PDIa 99.4 1E-12 2.3E-17 98.7 8.7 69 34-129 14-83 (100)
132 TIGR02738 TrbB type-F conjugat 99.4 8.6E-13 1.9E-17 106.5 8.2 80 38-132 50-133 (153)
133 cd02994 PDI_a_TMX PDIa family, 99.4 2.5E-12 5.4E-17 97.1 10.0 73 196-296 16-88 (101)
134 cd03000 PDI_a_TMX3 PDIa family 99.4 2.6E-12 5.7E-17 97.5 10.1 76 196-296 14-89 (104)
135 cd03005 PDI_a_ERp46 PDIa famil 99.4 1.6E-12 3.4E-17 98.2 8.6 74 199-296 18-91 (102)
136 COG1999 Uncharacterized protei 99.4 1.5E-11 3.2E-16 104.6 14.9 117 180-296 49-189 (207)
137 PRK10996 thioredoxin 2; Provis 99.4 3.8E-12 8.2E-17 101.7 10.7 75 196-297 51-125 (139)
138 cd02965 HyaE HyaE family; HyaE 99.4 3.2E-12 6.9E-17 96.3 9.2 75 196-297 26-102 (111)
139 PHA02278 thioredoxin-like prot 99.4 3.2E-12 6.8E-17 96.2 8.9 74 37-133 13-87 (103)
140 cd03003 PDI_a_ERdj5_N PDIa fam 99.4 2.3E-12 5E-17 97.2 7.9 79 27-132 7-86 (101)
141 cd02949 TRX_NTR TRX domain, no 99.4 5.4E-12 1.2E-16 94.5 9.7 75 196-297 12-86 (97)
142 cd02996 PDI_a_ERp44 PDIa famil 99.4 5.9E-12 1.3E-16 96.3 10.1 77 196-296 17-97 (108)
143 cd03002 PDI_a_MPD1_like PDI fa 99.4 3.7E-12 8.1E-17 97.5 9.0 69 196-288 17-85 (109)
144 cd02948 TRX_NDPK TRX domain, T 99.4 5.2E-12 1.1E-16 95.4 9.5 70 37-133 16-86 (102)
145 KOG0910 Thioredoxin-like prote 99.4 2.5E-12 5.3E-17 100.6 7.7 67 40-133 64-130 (150)
146 cd03013 PRX5_like Peroxiredoxi 99.4 5.2E-12 1.1E-16 102.8 9.8 115 15-133 1-136 (155)
147 COG0386 BtuE Glutathione perox 99.3 1.9E-11 4E-16 95.2 12.1 116 179-297 6-146 (162)
148 cd02956 ybbN ybbN protein fami 99.3 7.2E-12 1.6E-16 93.6 9.6 69 37-132 11-80 (96)
149 cd02963 TRX_DnaJ TRX domain, D 99.3 5.4E-12 1.2E-16 96.9 9.0 72 36-133 22-94 (111)
150 cd03065 PDI_b_Calsequestrin_N 99.3 9.2E-12 2E-16 96.0 10.0 72 198-296 28-104 (120)
151 cd02993 PDI_a_APS_reductase PD 99.3 4.9E-12 1.1E-16 96.8 8.4 77 196-296 20-97 (109)
152 cd02959 ERp19 Endoplasmic reti 99.3 2.4E-12 5.3E-17 99.5 6.2 78 194-296 16-95 (117)
153 cd02962 TMX2 TMX2 family; comp 99.3 1.6E-11 3.4E-16 98.8 10.6 72 37-134 46-124 (152)
154 cd03006 PDI_a_EFP1_N PDIa fami 99.3 7.7E-12 1.7E-16 95.7 8.3 79 25-130 13-96 (113)
155 PTZ00051 thioredoxin; Provisio 99.3 8.9E-12 1.9E-16 93.4 8.4 74 196-297 17-90 (98)
156 cd02984 TRX_PICOT TRX domain, 99.3 1.2E-11 2.7E-16 92.4 8.6 74 197-297 14-87 (97)
157 cd02989 Phd_like_TxnDC9 Phosdu 99.3 1.5E-11 3.2E-16 94.6 9.0 74 196-297 21-94 (113)
158 cd02957 Phd_like Phosducin (Ph 99.3 1.6E-11 3.5E-16 94.6 9.2 72 197-297 24-95 (113)
159 cd02997 PDI_a_PDIR PDIa family 99.3 2.3E-11 5.1E-16 92.1 9.5 78 196-296 16-93 (104)
160 TIGR01068 thioredoxin thioredo 99.3 4.5E-11 9.7E-16 89.9 10.4 73 197-296 14-86 (101)
161 PF00085 Thioredoxin: Thioredo 99.3 3.8E-11 8.1E-16 90.7 10.1 73 197-296 17-89 (103)
162 PTZ00443 Thioredoxin domain-co 99.3 2.6E-11 5.7E-16 103.8 9.9 73 197-296 52-124 (224)
163 PF02630 SCO1-SenC: SCO1/SenC; 99.3 5.6E-11 1.2E-15 98.7 11.6 118 15-133 28-170 (174)
164 cd02992 PDI_a_QSOX PDIa family 99.3 4.3E-11 9.2E-16 92.3 9.9 71 197-289 19-89 (114)
165 TIGR01126 pdi_dom protein disu 99.3 3.2E-11 6.9E-16 90.9 9.0 76 196-296 12-87 (102)
166 cd03004 PDI_a_ERdj5_C PDIa fam 99.3 3.5E-11 7.7E-16 91.2 8.8 70 37-132 18-88 (104)
167 TIGR01130 ER_PDI_fam protein d 99.3 2.3E-10 5E-15 110.2 16.7 179 48-289 246-431 (462)
168 cd03000 PDI_a_TMX3 PDIa family 99.2 1.3E-10 2.8E-15 88.2 11.6 68 37-129 14-83 (104)
169 cd02953 DsbDgamma DsbD gamma f 99.2 3.6E-11 7.9E-16 91.2 8.5 75 37-133 10-89 (104)
170 TIGR01295 PedC_BrcD bacterioci 99.2 4.1E-11 9E-16 93.2 8.9 83 196-297 22-109 (122)
171 cd02996 PDI_a_ERp44 PDIa famil 99.2 2.6E-11 5.6E-16 92.7 7.6 69 37-130 17-90 (108)
172 TIGR02740 TraF-like TraF-like 99.2 1.2E-11 2.5E-16 109.7 6.4 87 27-130 155-242 (271)
173 KOG0907 Thioredoxin [Posttrans 99.2 2.5E-11 5.4E-16 91.4 7.2 68 37-132 20-88 (106)
174 COG3118 Thioredoxin domain-con 99.2 4.3E-11 9.4E-16 103.7 9.3 90 37-164 42-132 (304)
175 cd02951 SoxW SoxW family; SoxW 99.2 6.3E-11 1.4E-15 93.0 9.5 85 36-133 11-101 (125)
176 KOG2792 Putative cytochrome C 99.2 4.3E-10 9.2E-15 94.9 14.8 117 180-296 121-260 (280)
177 PRK09381 trxA thioredoxin; Pro 99.2 4.5E-11 9.7E-16 91.5 8.3 69 38-133 21-90 (109)
178 cd02986 DLP Dim1 family, Dim1- 99.2 5.5E-11 1.2E-15 89.5 8.3 69 37-132 13-82 (114)
179 cd02955 SSP411 TRX domain, SSP 99.2 1.1E-10 2.4E-15 90.7 10.3 84 195-296 13-99 (124)
180 cd02952 TRP14_like Human TRX-r 99.2 3.4E-11 7.3E-16 92.5 7.2 80 196-294 20-107 (119)
181 cd02993 PDI_a_APS_reductase PD 99.2 7.4E-11 1.6E-15 90.3 9.1 69 37-129 20-90 (109)
182 cd02987 Phd_like_Phd Phosducin 99.2 7.9E-11 1.7E-15 97.6 9.8 72 197-297 83-154 (175)
183 cd02998 PDI_a_ERp38 PDIa famil 99.2 9.1E-11 2E-15 88.9 9.3 77 197-296 18-94 (105)
184 cd02961 PDI_a_family Protein D 99.2 4.6E-11 9.9E-16 89.6 7.6 76 196-296 14-90 (101)
185 cd03001 PDI_a_P5 PDIa family, 99.2 1E-10 2.2E-15 88.4 9.5 74 197-296 18-91 (103)
186 cd02994 PDI_a_TMX PDIa family, 99.2 1E-10 2.2E-15 88.2 9.4 69 36-130 15-83 (101)
187 cd02997 PDI_a_PDIR PDIa family 99.2 1.3E-10 2.8E-15 88.0 9.4 73 37-132 16-89 (104)
188 cd03002 PDI_a_MPD1_like PDI fa 99.2 1.1E-10 2.3E-15 89.4 8.6 68 37-128 17-85 (109)
189 cd02965 HyaE HyaE family; HyaE 99.2 1.3E-10 2.9E-15 87.5 8.9 70 37-133 26-98 (111)
190 cd03005 PDI_a_ERp46 PDIa famil 99.2 1.3E-10 2.8E-15 87.7 8.9 68 40-132 19-87 (102)
191 TIGR01126 pdi_dom protein disu 99.2 1E-10 2.2E-15 88.2 8.2 69 37-129 12-81 (102)
192 PRK10996 thioredoxin 2; Provis 99.2 1.9E-10 4E-15 91.9 9.8 70 37-133 51-121 (139)
193 cd02959 ERp19 Endoplasmic reti 99.2 1E-10 2.2E-15 90.5 7.9 75 34-133 15-92 (117)
194 cd02989 Phd_like_TxnDC9 Phosdu 99.2 2.5E-10 5.5E-15 87.7 9.8 69 37-133 21-90 (113)
195 PF13098 Thioredoxin_2: Thiore 99.2 6.7E-11 1.5E-15 91.0 6.5 91 37-133 4-98 (112)
196 PTZ00051 thioredoxin; Provisio 99.2 2E-10 4.4E-15 86.0 8.7 69 37-133 17-86 (98)
197 KOG0855 Alkyl hydroperoxide re 99.1 1.6E-10 3.5E-15 90.7 8.1 116 170-289 61-186 (211)
198 KOG0852 Alkyl hydroperoxide re 99.1 6.6E-10 1.4E-14 88.2 11.6 120 174-296 6-142 (196)
199 PF00085 Thioredoxin: Thioredo 99.1 5.5E-10 1.2E-14 84.2 10.9 68 38-132 17-85 (103)
200 cd02949 TRX_NTR TRX domain, no 99.1 3.4E-10 7.4E-15 84.6 9.5 70 37-133 12-82 (97)
201 cd02975 PfPDO_like_N Pyrococcu 99.1 4.5E-10 9.7E-15 86.4 10.3 63 197-286 22-84 (113)
202 PLN00410 U5 snRNP protein, DIM 99.1 7.1E-10 1.5E-14 87.5 11.6 71 37-133 22-94 (142)
203 cd02984 TRX_PICOT TRX domain, 99.1 3.6E-10 7.7E-15 84.5 9.2 69 38-133 14-83 (97)
204 COG0450 AhpC Peroxiredoxin [Po 99.1 3.1E-10 6.8E-15 92.6 9.3 119 13-133 3-139 (194)
205 cd02998 PDI_a_ERp38 PDIa famil 99.1 3.8E-10 8.3E-15 85.5 9.0 71 37-130 17-88 (105)
206 cd03065 PDI_b_Calsequestrin_N 99.1 1.6E-10 3.5E-15 89.0 6.8 68 40-132 30-101 (120)
207 cd02957 Phd_like Phosducin (Ph 99.1 2.9E-10 6.2E-15 87.6 8.0 67 38-133 24-91 (113)
208 PTZ00443 Thioredoxin domain-co 99.1 9.6E-10 2.1E-14 94.2 11.8 69 38-133 52-121 (224)
209 cd02992 PDI_a_QSOX PDIa family 99.1 4.6E-10 1E-14 86.5 8.0 69 38-128 19-89 (114)
210 cd02995 PDI_a_PDI_a'_C PDIa fa 99.1 7.9E-10 1.7E-14 83.6 8.8 67 197-289 18-84 (104)
211 cd02961 PDI_a_family Protein D 99.1 4.8E-10 1E-14 84.0 6.9 71 36-130 13-84 (101)
212 KOG0908 Thioredoxin-like prote 99.1 4.5E-10 9.7E-15 94.3 7.2 75 195-297 19-93 (288)
213 cd02988 Phd_like_VIAF Phosduci 99.0 5.8E-10 1.3E-14 93.6 7.1 71 197-298 102-172 (192)
214 TIGR01068 thioredoxin thioredo 99.0 2E-09 4.4E-14 80.7 9.4 68 38-132 14-82 (101)
215 TIGR00411 redox_disulf_1 small 99.0 2.7E-09 5.8E-14 77.0 9.6 62 200-290 2-63 (82)
216 PRK00293 dipZ thiol:disulfide 99.0 1.2E-09 2.5E-14 107.0 10.1 80 194-296 471-555 (571)
217 cd03001 PDI_a_P5 PDIa family, 99.0 2.3E-09 5E-14 80.9 9.6 64 38-127 18-82 (103)
218 cd02947 TRX_family TRX family; 99.0 2.1E-09 4.5E-14 78.9 9.1 71 198-296 11-81 (93)
219 TIGR01295 PedC_BrcD bacterioci 99.0 5.2E-09 1.1E-13 81.5 11.4 79 37-133 22-105 (122)
220 cd02952 TRP14_like Human TRX-r 99.0 1.2E-09 2.5E-14 84.0 7.6 78 36-132 19-105 (119)
221 cd02995 PDI_a_PDI_a'_C PDIa fa 99.0 2.2E-09 4.7E-14 81.2 9.1 66 38-128 18-84 (104)
222 TIGR00424 APS_reduc 5'-adenyly 99.0 2.3E-09 5E-14 101.0 10.3 71 195-289 369-439 (463)
223 cd02987 Phd_like_Phd Phosducin 99.0 2E-09 4.4E-14 89.2 8.7 67 38-133 83-150 (175)
224 KOG1651 Glutathione peroxidase 99.0 6.7E-09 1.4E-13 82.1 10.7 117 178-296 14-154 (171)
225 cd02975 PfPDO_like_N Pyrococcu 99.0 3.3E-09 7.1E-14 81.5 8.2 60 40-126 25-84 (113)
226 KOG0190 Protein disulfide isom 99.0 1.9E-09 4.1E-14 101.0 8.1 92 181-296 26-117 (493)
227 COG1999 Uncharacterized protei 98.9 1.5E-08 3.2E-13 86.3 12.7 112 21-133 49-186 (207)
228 cd02960 AGR Anterior Gradient 98.9 5.2E-09 1.1E-13 81.3 8.4 97 195-322 21-120 (130)
229 TIGR00412 redox_disulf_2 small 98.9 6.9E-09 1.5E-13 73.7 8.2 59 201-291 2-60 (76)
230 TIGR01130 ER_PDI_fam protein d 98.9 3.7E-09 8.1E-14 101.8 9.1 77 196-296 17-94 (462)
231 cd02955 SSP411 TRX domain, SSP 98.9 2.8E-08 6.1E-13 77.2 11.6 83 34-134 11-97 (124)
232 PLN02309 5'-adenylylsulfate re 98.9 9.1E-09 2E-13 96.9 10.6 67 196-286 364-431 (457)
233 PTZ00102 disulphide isomerase; 98.9 6.3E-09 1.4E-13 100.7 9.8 77 195-296 47-123 (477)
234 COG2077 Tpx Peroxiredoxin [Pos 98.9 2.7E-08 5.8E-13 77.4 11.1 121 173-298 19-151 (158)
235 PHA02125 thioredoxin-like prot 98.9 1.1E-08 2.4E-13 72.5 7.8 60 201-296 2-61 (75)
236 PTZ00062 glutaredoxin; Provisi 98.9 8.3E-09 1.8E-13 87.0 8.2 65 198-298 18-82 (204)
237 cd02958 UAS UAS family; UAS is 98.8 4.5E-08 9.7E-13 75.4 11.0 81 193-297 13-97 (114)
238 KOG2792 Putative cytochrome C 98.8 2.9E-08 6.2E-13 84.0 10.3 114 21-134 121-258 (280)
239 KOG0908 Thioredoxin-like prote 98.8 9E-09 1.9E-13 86.6 7.1 73 33-133 16-89 (288)
240 TIGR00424 APS_reduc 5'-adenyly 98.8 1.1E-08 2.3E-13 96.5 8.5 68 37-127 370-438 (463)
241 cd02973 TRX_GRX_like Thioredox 98.8 2.5E-08 5.4E-13 68.9 8.2 63 201-293 3-65 (67)
242 TIGR00411 redox_disulf_1 small 98.8 3.7E-08 8.1E-13 70.9 8.9 61 41-130 3-63 (82)
243 TIGR02187 GlrX_arch Glutaredox 98.8 2.1E-08 4.5E-13 86.4 8.9 75 196-296 18-96 (215)
244 cd02988 Phd_like_VIAF Phosduci 98.8 1.7E-08 3.6E-13 84.8 7.9 65 38-133 102-167 (192)
245 cd02947 TRX_family TRX family; 98.8 4.8E-08 1E-12 71.5 9.2 66 39-132 11-77 (93)
246 PF00255 GSHPx: Glutathione pe 98.8 3.8E-08 8.2E-13 74.1 8.6 79 180-261 3-89 (108)
247 cd03026 AhpF_NTD_C TRX-GRX-lik 98.8 3.9E-08 8.4E-13 71.9 8.1 71 193-293 8-78 (89)
248 COG0386 BtuE Glutathione perox 98.8 7E-08 1.5E-12 75.4 9.4 115 18-134 4-143 (162)
249 cd02982 PDI_b'_family Protein 98.8 5.6E-08 1.2E-12 73.3 8.8 68 197-290 12-82 (103)
250 COG2077 Tpx Peroxiredoxin [Pos 98.8 1.3E-07 2.8E-12 73.7 10.7 116 14-133 19-146 (158)
251 PLN02309 5'-adenylylsulfate re 98.7 3.5E-08 7.5E-13 93.1 8.8 66 37-126 364-431 (457)
252 PRK00293 dipZ thiol:disulfide 98.7 6.9E-08 1.5E-12 94.7 11.0 75 34-131 470-548 (571)
253 cd02973 TRX_GRX_like Thioredox 98.7 1.2E-07 2.5E-12 65.5 8.1 62 41-132 3-64 (67)
254 KOG1651 Glutathione peroxidase 98.7 9.4E-08 2E-12 75.7 8.1 119 16-135 11-153 (171)
255 TIGR00412 redox_disulf_2 small 98.7 1.3E-07 2.8E-12 67.1 7.8 60 41-132 2-61 (76)
256 KOG0855 Alkyl hydroperoxide re 98.7 1.4E-07 3E-12 74.4 8.5 114 12-129 62-186 (211)
257 cd03007 PDI_a_ERp29_N PDIa fam 98.6 2.4E-07 5.2E-12 70.7 9.2 73 196-289 17-91 (116)
258 PF13728 TraF: F plasmid trans 98.6 2.1E-07 4.5E-12 79.7 9.1 86 194-296 117-203 (215)
259 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 2E-07 4.4E-12 68.1 7.6 71 33-133 7-78 (89)
260 TIGR03143 AhpF_homolog putativ 98.6 1.7E-06 3.6E-11 85.2 16.3 176 34-293 362-542 (555)
261 PHA02125 thioredoxin-like prot 98.6 2.4E-07 5.1E-12 65.6 7.4 57 40-132 1-57 (75)
262 cd02960 AGR Anterior Gradient 98.5 5.5E-07 1.2E-11 70.0 9.0 72 35-133 20-95 (130)
263 cd02982 PDI_b'_family Protein 98.5 3.2E-07 6.9E-12 69.2 7.4 63 38-126 12-77 (103)
264 smart00594 UAS UAS domain. 98.5 4.3E-07 9.4E-12 70.8 7.3 82 191-296 21-110 (122)
265 KOG0912 Thiol-disulfide isomer 98.5 5.3E-07 1.2E-11 78.2 8.0 78 197-296 13-90 (375)
266 KOG0912 Thiol-disulfide isomer 98.5 5.1E-07 1.1E-11 78.3 7.7 88 40-160 16-104 (375)
267 PF00255 GSHPx: Glutathione pe 98.4 1.3E-06 2.9E-11 65.7 8.5 59 21-81 3-63 (108)
268 PF13899 Thioredoxin_7: Thiore 98.4 7.3E-07 1.6E-11 64.2 6.8 45 195-242 15-62 (82)
269 TIGR02739 TraF type-F conjugat 98.4 1.4E-06 3.1E-11 75.9 9.6 86 194-296 147-233 (256)
270 PF14595 Thioredoxin_9: Thiore 98.4 3.3E-07 7.1E-12 71.8 5.0 76 194-296 38-116 (129)
271 KOG0854 Alkyl hydroperoxide re 98.4 3.1E-06 6.8E-11 67.5 10.3 121 173-295 7-148 (224)
272 cd02958 UAS UAS family; UAS is 98.4 1.7E-06 3.7E-11 66.6 8.8 76 34-133 13-93 (114)
273 KOG0852 Alkyl hydroperoxide re 98.4 2.7E-06 5.8E-11 67.9 9.0 117 14-132 5-138 (196)
274 PRK13703 conjugal pilus assemb 98.4 2.6E-06 5.5E-11 73.9 9.2 86 194-296 140-226 (248)
275 KOG4277 Uncharacterized conser 98.3 6.7E-07 1.5E-11 77.3 5.1 68 40-132 46-114 (468)
276 PF13728 TraF: F plasmid trans 98.3 2.2E-06 4.7E-11 73.4 7.6 82 33-131 115-197 (215)
277 COG0526 TrxA Thiol-disulfide i 98.3 2.5E-06 5.5E-11 65.0 7.2 73 191-289 26-100 (127)
278 KOG4277 Uncharacterized conser 98.3 9.8E-07 2.1E-11 76.4 5.1 74 198-295 44-117 (468)
279 cd01659 TRX_superfamily Thiore 98.3 4.6E-06 9.9E-11 56.0 7.6 63 201-287 1-63 (69)
280 cd03007 PDI_a_ERp29_N PDIa fam 98.2 3.2E-06 6.8E-11 64.5 6.6 66 37-128 17-90 (116)
281 KOG1731 FAD-dependent sulfhydr 98.2 1.1E-06 2.3E-11 82.8 4.3 66 40-127 60-126 (606)
282 smart00594 UAS UAS domain. 98.2 1.1E-05 2.3E-10 62.9 9.2 74 31-128 20-97 (122)
283 KOG0191 Thioredoxin/protein di 98.2 6.6E-06 1.4E-10 77.3 9.4 66 196-287 46-111 (383)
284 TIGR02739 TraF type-F conjugat 98.2 4.9E-06 1.1E-10 72.6 6.9 83 32-131 144-227 (256)
285 PF13899 Thioredoxin_7: Thiore 98.2 5.5E-06 1.2E-10 59.6 6.0 45 36-82 15-63 (82)
286 PRK13703 conjugal pilus assemb 98.1 6.2E-06 1.4E-10 71.5 6.6 80 33-129 138-218 (248)
287 cd01659 TRX_superfamily Thiore 98.1 2.8E-05 6.1E-10 52.0 7.9 63 41-127 1-63 (69)
288 KOG0854 Alkyl hydroperoxide re 98.1 2.5E-05 5.3E-10 62.5 8.1 116 15-132 8-145 (224)
289 PRK11509 hydrogenase-1 operon 98.0 9.5E-05 2.1E-09 57.6 10.7 73 199-297 36-110 (132)
290 PF03190 Thioredox_DsbH: Prote 98.0 2E-05 4.2E-10 63.7 6.8 86 191-294 31-119 (163)
291 COG0526 TrxA Thiol-disulfide i 98.0 3.5E-05 7.5E-10 58.6 8.0 69 30-124 24-96 (127)
292 KOG1731 FAD-dependent sulfhydr 98.0 5.8E-06 1.3E-10 77.9 3.5 69 198-287 58-126 (606)
293 COG4232 Thiol:disulfide interc 97.9 2E-05 4.4E-10 75.1 7.0 77 196-293 473-550 (569)
294 COG2143 Thioredoxin-related pr 97.9 9.1E-05 2E-09 58.2 9.1 86 35-133 39-131 (182)
295 KOG0911 Glutaredoxin-related p 97.9 2E-05 4.3E-10 66.0 5.1 68 37-132 16-84 (227)
296 PF14595 Thioredoxin_9: Thiore 97.9 1.9E-05 4.2E-10 61.8 4.7 76 34-133 37-113 (129)
297 PRK11657 dsbG disulfide isomer 97.9 0.00059 1.3E-08 60.1 14.4 92 195-291 115-233 (251)
298 PF00837 T4_deiodinase: Iodoth 97.9 3.4E-05 7.3E-10 65.7 6.1 119 171-296 72-219 (237)
299 TIGR02196 GlrX_YruB Glutaredox 97.8 7.6E-05 1.6E-09 52.0 7.0 59 201-290 2-60 (74)
300 TIGR02200 GlrX_actino Glutared 97.8 6.4E-05 1.4E-09 53.0 6.2 65 201-295 2-67 (77)
301 PRK10877 protein disulfide iso 97.8 0.0012 2.7E-08 57.3 15.3 88 196-291 106-214 (232)
302 TIGR02180 GRX_euk Glutaredoxin 97.8 5.1E-05 1.1E-09 54.6 5.4 60 201-283 1-60 (84)
303 COG2143 Thioredoxin-related pr 97.8 0.00039 8.5E-09 54.7 10.0 94 194-297 39-135 (182)
304 cd02991 UAS_ETEA UAS family, E 97.7 0.00027 5.8E-09 54.3 9.0 76 194-296 14-98 (116)
305 PF06110 DUF953: Eukaryotic pr 97.7 0.00018 3.8E-09 55.2 7.6 78 196-292 18-104 (119)
306 TIGR02180 GRX_euk Glutaredoxin 97.7 0.00016 3.5E-09 52.0 6.4 65 41-131 1-65 (84)
307 TIGR02196 GlrX_YruB Glutaredox 97.6 0.00025 5.4E-09 49.3 6.8 55 41-123 2-56 (74)
308 PRK15317 alkyl hydroperoxide r 97.6 0.0057 1.2E-07 59.9 18.1 64 193-283 112-175 (517)
309 KOG0914 Thioredoxin-like prote 97.6 0.00018 3.8E-09 59.8 6.0 104 27-158 131-244 (265)
310 PF00837 T4_deiodinase: Iodoth 97.6 0.00044 9.6E-09 59.0 8.6 118 14-135 74-218 (237)
311 COG4232 Thiol:disulfide interc 97.6 0.00016 3.4E-09 69.2 6.5 73 36-129 472-546 (569)
312 TIGR02200 GlrX_actino Glutared 97.6 0.00023 5.1E-09 50.1 6.0 63 41-133 2-65 (77)
313 cd03020 DsbA_DsbC_DsbG DsbA fa 97.6 0.0022 4.7E-08 54.4 12.9 90 195-291 75-184 (197)
314 PRK11509 hydrogenase-1 operon 97.4 0.00064 1.4E-08 53.0 7.0 68 40-133 37-106 (132)
315 PF06110 DUF953: Eukaryotic pr 97.4 0.001 2.2E-08 51.0 7.9 77 37-132 18-104 (119)
316 PF13192 Thioredoxin_3: Thiore 97.4 0.00085 1.8E-08 47.4 6.8 58 205-294 6-63 (76)
317 TIGR03140 AhpF alkyl hydropero 97.4 0.015 3.2E-07 57.0 17.8 64 193-283 113-176 (515)
318 PF03190 Thioredox_DsbH: Prote 97.4 0.00054 1.2E-08 55.4 6.3 85 31-134 30-119 (163)
319 PF13192 Thioredoxin_3: Thiore 97.3 0.0025 5.3E-08 45.0 8.9 59 43-133 4-62 (76)
320 PF00462 Glutaredoxin: Glutare 97.3 0.0022 4.7E-08 42.8 7.6 59 41-130 1-59 (60)
321 PF00462 Glutaredoxin: Glutare 97.2 0.0014 3.1E-08 43.7 6.6 55 201-283 1-55 (60)
322 cd03020 DsbA_DsbC_DsbG DsbA fa 97.2 0.0037 8.1E-08 52.9 10.5 96 30-131 69-184 (197)
323 KOG3425 Uncharacterized conser 97.2 0.0011 2.4E-08 49.8 5.6 71 197-286 25-104 (128)
324 PRK10877 protein disulfide iso 97.1 0.0049 1.1E-07 53.6 10.2 95 31-131 100-214 (232)
325 PRK11657 dsbG disulfide isomer 97.1 0.0064 1.4E-07 53.5 11.1 92 36-131 115-233 (251)
326 PRK11200 grxA glutaredoxin 1; 97.1 0.0037 8E-08 45.1 7.6 66 41-132 3-70 (85)
327 KOG0914 Thioredoxin-like prote 97.0 0.00076 1.7E-08 56.1 4.0 91 197-315 144-241 (265)
328 PF05988 DUF899: Bacterial pro 97.0 0.0081 1.8E-07 50.4 10.0 109 182-295 51-173 (211)
329 cd02991 UAS_ETEA UAS family, E 97.0 0.0066 1.4E-07 46.6 8.6 71 35-132 14-94 (116)
330 PF04592 SelP_N: Selenoprotein 96.9 0.0066 1.4E-07 51.6 8.5 105 190-295 19-127 (238)
331 PRK11200 grxA glutaredoxin 1; 96.8 0.0033 7.1E-08 45.4 5.7 65 201-291 3-69 (85)
332 cd02972 DsbA_family DsbA famil 96.8 0.006 1.3E-07 44.5 7.3 83 41-125 1-91 (98)
333 cd03019 DsbA_DsbA DsbA family, 96.7 0.0094 2E-07 49.3 8.4 33 37-69 14-47 (178)
334 cd03419 GRX_GRXh_1_2_like Glut 96.7 0.008 1.7E-07 42.8 6.6 64 41-132 2-65 (82)
335 PF09695 YtfJ_HI0045: Bacteria 96.7 0.065 1.4E-06 42.8 12.1 131 15-160 3-156 (160)
336 cd03419 GRX_GRXh_1_2_like Glut 96.7 0.0053 1.2E-07 43.7 5.6 57 201-282 2-58 (82)
337 PF04592 SelP_N: Selenoprotein 96.6 0.01 2.3E-07 50.4 7.6 112 18-133 9-125 (238)
338 cd02972 DsbA_family DsbA famil 96.6 0.006 1.3E-07 44.5 5.7 81 201-285 1-91 (98)
339 PF02114 Phosducin: Phosducin; 96.5 0.0053 1.1E-07 54.3 5.5 71 197-296 146-216 (265)
340 cd02976 NrdH NrdH-redoxin (Nrd 96.4 0.014 3.1E-07 40.1 6.6 55 201-283 2-56 (73)
341 cd02066 GRX_family Glutaredoxi 96.4 0.029 6.3E-07 38.3 8.0 61 41-132 2-62 (72)
342 PF05988 DUF899: Bacterial pro 96.4 0.021 4.6E-07 47.9 8.1 108 21-132 48-170 (211)
343 cd02976 NrdH NrdH-redoxin (Nrd 96.3 0.02 4.3E-07 39.4 6.6 55 41-123 2-56 (73)
344 PF11009 DUF2847: Protein of u 96.3 0.025 5.5E-07 42.2 7.3 78 196-296 18-96 (105)
345 cd02066 GRX_family Glutaredoxi 96.2 0.025 5.5E-07 38.6 6.9 61 201-292 2-62 (72)
346 KOG3425 Uncharacterized conser 96.2 0.021 4.5E-07 43.1 6.5 71 37-126 24-104 (128)
347 TIGR02190 GlrX-dom Glutaredoxi 96.2 0.016 3.5E-07 41.1 5.9 61 199-291 8-68 (79)
348 PHA03050 glutaredoxin; Provisi 96.2 0.019 4.2E-07 43.4 6.5 68 40-132 14-81 (108)
349 PF02114 Phosducin: Phosducin; 96.2 0.012 2.6E-07 52.0 6.0 65 40-133 149-213 (265)
350 PF13462 Thioredoxin_4: Thiore 96.1 0.026 5.5E-07 45.9 7.4 54 29-82 3-57 (162)
351 PHA03050 glutaredoxin; Provisi 96.1 0.012 2.5E-07 44.6 4.8 66 201-291 15-80 (108)
352 PF11009 DUF2847: Protein of u 96.1 0.046 9.9E-07 40.8 7.8 72 40-134 22-94 (105)
353 cd03418 GRX_GRXb_1_3_like Glut 96.0 0.052 1.1E-06 37.8 7.8 61 41-132 2-63 (75)
354 TIGR02183 GRXA Glutaredoxin, G 96.0 0.017 3.6E-07 41.8 5.3 60 201-283 2-63 (86)
355 cd03418 GRX_GRXb_1_3_like Glut 96.0 0.037 8E-07 38.5 6.7 56 201-285 2-58 (75)
356 TIGR02189 GlrX-like_plant Glut 95.9 0.029 6.3E-07 41.7 6.2 65 40-132 9-73 (99)
357 TIGR02190 GlrX-dom Glutaredoxi 95.9 0.05 1.1E-06 38.5 7.2 60 40-131 9-68 (79)
358 TIGR02181 GRX_bact Glutaredoxi 95.8 0.028 6.1E-07 39.7 5.7 54 202-283 2-55 (79)
359 cd03027 GRX_DEP Glutaredoxin ( 95.8 0.071 1.5E-06 37.0 7.6 61 41-132 3-63 (73)
360 KOG3414 Component of the U4/U6 95.8 0.14 3.1E-06 39.0 9.4 114 196-341 22-136 (142)
361 TIGR02183 GRXA Glutaredoxin, G 95.8 0.038 8.3E-07 39.9 6.2 65 41-131 2-68 (86)
362 PF05176 ATP-synt_10: ATP10 pr 95.8 0.087 1.9E-06 46.2 9.5 131 16-159 98-247 (252)
363 TIGR02181 GRX_bact Glutaredoxi 95.7 0.035 7.5E-07 39.2 5.8 59 42-131 2-60 (79)
364 PF13848 Thioredoxin_6: Thiore 95.7 0.97 2.1E-05 37.3 15.5 128 108-290 32-164 (184)
365 TIGR03143 AhpF_homolog putativ 95.7 0.038 8.2E-07 54.7 7.9 68 36-133 474-542 (555)
366 PF05176 ATP-synt_10: ATP10 pr 95.7 0.094 2E-06 46.0 9.4 119 177-297 100-236 (252)
367 KOG0911 Glutaredoxin-related p 95.7 0.0055 1.2E-07 51.6 1.6 73 196-296 16-88 (227)
368 cd03029 GRX_hybridPRX5 Glutare 95.6 0.047 1E-06 37.8 5.9 55 201-285 3-57 (72)
369 TIGR02189 GlrX-like_plant Glut 95.5 0.037 8E-07 41.2 5.3 59 201-285 10-68 (99)
370 cd03027 GRX_DEP Glutaredoxin ( 95.4 0.081 1.8E-06 36.7 6.7 55 201-283 3-57 (73)
371 cd03023 DsbA_Com1_like DsbA fa 95.4 0.031 6.8E-07 44.7 5.2 32 196-227 4-35 (154)
372 PF09695 YtfJ_HI0045: Bacteria 95.3 0.13 2.9E-06 41.1 8.2 108 187-298 27-145 (160)
373 COG4312 Uncharacterized protei 95.3 0.039 8.4E-07 46.2 5.4 91 21-115 54-153 (247)
374 PRK10329 glutaredoxin-like pro 95.3 0.09 1.9E-06 37.5 6.6 54 201-283 3-56 (81)
375 cd03029 GRX_hybridPRX5 Glutare 95.3 0.13 2.9E-06 35.5 7.4 59 41-131 3-61 (72)
376 cd03023 DsbA_Com1_like DsbA fa 95.2 0.041 9E-07 44.0 5.4 38 37-77 4-42 (154)
377 cd03028 GRX_PICOT_like Glutare 95.2 0.086 1.9E-06 38.4 6.4 65 196-291 6-74 (90)
378 TIGR02194 GlrX_NrdH Glutaredox 95.1 0.083 1.8E-06 36.6 5.9 53 202-283 2-54 (72)
379 PF02966 DIM1: Mitosis protein 95.1 0.38 8.2E-06 37.2 9.8 115 196-341 19-133 (133)
380 PRK10638 glutaredoxin 3; Provi 95.1 0.16 3.5E-06 36.2 7.6 61 41-132 4-64 (83)
381 TIGR00365 monothiol glutaredox 95.0 0.17 3.7E-06 37.4 7.7 62 40-132 14-79 (97)
382 COG0678 AHP1 Peroxiredoxin [Po 95.0 0.094 2E-06 41.4 6.3 103 189-295 28-146 (165)
383 TIGR00365 monothiol glutaredox 95.0 0.1 2.2E-06 38.6 6.4 59 198-285 12-74 (97)
384 KOG0913 Thiol-disulfide isomer 95.0 0.011 2.4E-07 50.1 1.3 69 199-293 41-109 (248)
385 PRK10638 glutaredoxin 3; Provi 94.9 0.12 2.7E-06 36.8 6.6 60 201-291 4-63 (83)
386 cd03028 GRX_PICOT_like Glutare 94.9 0.21 4.5E-06 36.3 7.8 55 47-132 21-75 (90)
387 PF13911 AhpC-TSA_2: AhpC/TSA 94.9 0.087 1.9E-06 40.2 6.0 53 219-275 2-54 (115)
388 PF13462 Thioredoxin_4: Thiore 94.8 0.098 2.1E-06 42.4 6.5 51 190-241 5-55 (162)
389 KOG1672 ATP binding protein [P 94.7 0.068 1.5E-06 44.0 5.1 73 196-296 83-155 (211)
390 COG0695 GrxC Glutaredoxin and 94.7 0.11 2.5E-06 36.8 5.7 20 201-220 3-22 (80)
391 COG1331 Highly conserved prote 94.6 0.089 1.9E-06 51.8 6.7 77 196-294 42-125 (667)
392 PRK15317 alkyl hydroperoxide r 94.5 0.14 3.1E-06 50.2 8.0 67 36-132 114-181 (517)
393 TIGR02194 GlrX_NrdH Glutaredox 94.4 0.18 3.9E-06 34.9 6.2 53 42-123 2-54 (72)
394 COG0695 GrxC Glutaredoxin and 94.0 0.25 5.3E-06 35.1 6.3 57 41-123 3-59 (80)
395 COG0678 AHP1 Peroxiredoxin [Po 93.9 0.4 8.7E-06 37.9 7.6 116 14-133 4-144 (165)
396 PRK10329 glutaredoxin-like pro 93.5 0.42 9.1E-06 34.0 6.8 54 41-123 3-56 (81)
397 KOG1752 Glutaredoxin and relat 93.5 0.64 1.4E-05 34.8 7.9 65 40-132 15-79 (104)
398 COG4545 Glutaredoxin-related p 93.3 0.34 7.3E-06 33.3 5.4 73 42-132 5-77 (85)
399 COG4312 Uncharacterized protei 93.1 0.15 3.3E-06 42.8 4.4 88 183-275 58-153 (247)
400 cd03019 DsbA_DsbA DsbA family, 92.8 0.17 3.7E-06 41.7 4.5 41 196-239 14-54 (178)
401 PRK10824 glutaredoxin-4; Provi 92.6 0.17 3.6E-06 38.7 3.7 25 198-222 15-43 (115)
402 PRK10824 glutaredoxin-4; Provi 92.2 0.75 1.6E-05 35.1 6.9 62 40-132 17-82 (115)
403 TIGR03140 AhpF alkyl hydropero 92.2 0.38 8.3E-06 47.2 6.7 61 36-123 115-176 (515)
404 KOG1752 Glutaredoxin and relat 92.2 0.44 9.5E-06 35.7 5.4 63 201-291 16-78 (104)
405 KOG0541 Alkyl hydroperoxide re 91.7 0.65 1.4E-05 37.0 6.1 79 14-93 10-100 (171)
406 KOG0913 Thiol-disulfide isomer 91.6 0.038 8.1E-07 46.9 -0.9 71 37-133 39-109 (248)
407 cd02983 P5_C P5 family, C-term 91.3 0.94 2E-05 35.5 6.8 70 198-293 21-96 (130)
408 PF13778 DUF4174: Domain of un 90.3 6.8 0.00015 30.0 10.9 105 32-160 2-110 (118)
409 PRK10954 periplasmic protein d 90.2 0.37 7.9E-06 41.1 3.9 41 36-78 35-79 (207)
410 KOG1672 ATP binding protein [P 90.1 0.74 1.6E-05 38.1 5.3 66 40-133 87-152 (211)
411 PF13778 DUF4174: Domain of un 90.1 3.8 8.2E-05 31.4 9.1 92 192-296 3-97 (118)
412 KOG0541 Alkyl hydroperoxide re 89.3 1.1 2.5E-05 35.7 5.6 105 189-296 34-153 (171)
413 PF07449 HyaE: Hydrogenase-1 e 88.7 0.93 2E-05 34.0 4.6 70 199-296 28-100 (107)
414 KOG3414 Component of the U4/U6 88.5 3 6.6E-05 32.0 7.1 61 37-124 22-84 (142)
415 COG4545 Glutaredoxin-related p 87.4 1.3 2.8E-05 30.5 4.2 73 202-292 5-77 (85)
416 PRK12759 bifunctional gluaredo 86.8 1.3 2.7E-05 42.1 5.4 21 201-221 4-24 (410)
417 PRK10954 periplasmic protein d 84.1 1.2 2.5E-05 38.0 3.5 42 196-240 36-80 (207)
418 KOG2603 Oligosaccharyltransfer 84.0 5.5 0.00012 35.7 7.5 73 196-291 59-141 (331)
419 PF05768 DUF836: Glutaredoxin- 83.8 3.3 7.2E-05 29.2 5.2 57 40-125 1-57 (81)
420 cd03060 GST_N_Omega_like GST_N 83.3 6.4 0.00014 26.7 6.4 59 203-292 3-61 (71)
421 PF05768 DUF836: Glutaredoxin- 83.3 2.4 5.1E-05 30.0 4.3 56 201-285 2-57 (81)
422 cd02983 P5_C P5 family, C-term 83.2 14 0.0003 28.8 9.0 72 54-161 41-114 (130)
423 PRK12759 bifunctional gluaredo 82.8 2.8 6.2E-05 39.8 5.8 35 41-83 4-38 (410)
424 PF13848 Thioredoxin_6: Thiore 81.2 19 0.00041 29.4 9.7 63 40-128 98-162 (184)
425 PF02966 DIM1: Mitosis protein 80.2 14 0.0003 28.8 7.6 45 37-83 19-64 (133)
426 KOG2603 Oligosaccharyltransfer 79.9 22 0.00048 32.0 9.8 95 13-131 32-141 (331)
427 KOG4498 Uncharacterized conser 78.9 4.4 9.5E-05 33.5 4.8 56 183-240 35-92 (197)
428 cd03031 GRX_GRX_like Glutaredo 76.9 12 0.00026 30.0 6.7 28 48-83 15-42 (147)
429 PF07449 HyaE: Hydrogenase-1 e 76.4 6.5 0.00014 29.5 4.8 66 40-132 29-96 (107)
430 PF06053 DUF929: Domain of unk 75.8 3.7 8E-05 35.9 3.8 34 195-228 56-89 (249)
431 cd03073 PDI_b'_ERp72_ERp57 PDI 75.7 11 0.00023 28.6 6.0 50 213-288 34-88 (111)
432 COG1331 Highly conserved prote 75.2 8.5 0.00018 38.4 6.5 80 34-133 39-124 (667)
433 cd02977 ArsC_family Arsenate R 74.8 5.9 0.00013 29.5 4.4 44 202-252 2-46 (105)
434 cd03060 GST_N_Omega_like GST_N 74.3 16 0.00034 24.7 6.1 32 43-80 3-34 (71)
435 COG1651 DsbG Protein-disulfide 73.1 11 0.00025 32.7 6.4 54 25-79 71-125 (244)
436 KOG3170 Conserved phosducin-li 71.9 6.8 0.00015 32.8 4.2 70 196-296 110-179 (240)
437 PF01216 Calsequestrin: Calseq 70.0 39 0.00085 31.0 8.9 72 40-136 54-130 (383)
438 COG1651 DsbG Protein-disulfide 69.0 13 0.00029 32.2 5.9 47 183-229 70-116 (244)
439 cd03035 ArsC_Yffb Arsenate Red 67.8 9.8 0.00021 28.4 4.1 44 202-252 2-46 (105)
440 PHA03075 glutaredoxin-like pro 67.6 5.4 0.00012 30.1 2.5 30 198-227 2-31 (123)
441 cd03031 GRX_GRX_like Glutaredo 67.3 24 0.00051 28.3 6.4 14 208-221 15-28 (147)
442 PF01216 Calsequestrin: Calseq 67.0 21 0.00045 32.7 6.5 71 197-294 51-128 (383)
443 KOG3171 Conserved phosducin-li 66.9 16 0.00034 31.0 5.3 78 26-132 144-225 (273)
444 PF04134 DUF393: Protein of un 65.7 16 0.00035 27.4 5.1 30 204-238 2-31 (114)
445 KOG4498 Uncharacterized conser 65.2 7.4 0.00016 32.2 3.1 54 24-78 35-91 (197)
446 COG3011 Predicted thiol-disulf 63.8 34 0.00074 26.9 6.5 71 197-295 6-77 (137)
447 COG3019 Predicted metal-bindin 63.5 48 0.001 26.1 7.1 63 200-296 27-92 (149)
448 cd03036 ArsC_like Arsenate Red 62.1 13 0.00027 28.1 3.8 20 202-221 2-21 (111)
449 TIGR01617 arsC_related transcr 62.0 13 0.00027 28.4 3.9 42 202-252 2-46 (117)
450 KOG2640 Thioredoxin [Function 61.2 2.9 6.2E-05 37.4 0.1 81 27-133 62-146 (319)
451 cd03036 ArsC_like Arsenate Red 59.9 5.8 0.00012 30.0 1.6 19 43-61 3-21 (111)
452 PRK01655 spxA transcriptional 59.6 13 0.00027 29.1 3.5 46 201-253 2-48 (131)
453 KOG3170 Conserved phosducin-li 59.2 27 0.00059 29.3 5.4 88 38-160 111-199 (240)
454 cd03032 ArsC_Spx Arsenate Redu 59.1 18 0.00039 27.4 4.3 42 202-252 3-47 (115)
455 cd03073 PDI_b'_ERp72_ERp57 PDI 58.6 51 0.0011 24.8 6.6 51 53-128 34-88 (111)
456 PF13743 Thioredoxin_5: Thiore 58.4 13 0.00029 30.6 3.7 34 43-78 2-35 (176)
457 cd02978 KaiB_like KaiB-like fa 58.3 46 0.00099 23.0 5.6 63 199-286 2-64 (72)
458 KOG2507 Ubiquitin regulatory p 57.9 73 0.0016 30.0 8.4 31 267-297 67-97 (506)
459 cd02977 ArsC_family Arsenate R 56.2 13 0.00029 27.5 3.1 20 42-61 2-21 (105)
460 TIGR01617 arsC_related transcr 55.8 25 0.00054 26.7 4.6 32 43-82 3-34 (117)
461 PRK12559 transcriptional regul 55.5 31 0.00068 26.9 5.1 46 201-253 2-48 (131)
462 PHA03075 glutaredoxin-like pro 54.9 21 0.00045 27.1 3.7 27 40-66 4-30 (123)
463 PF01323 DSBA: DSBA-like thior 54.8 27 0.00059 28.7 5.1 37 40-79 1-37 (193)
464 PF13743 Thioredoxin_5: Thiore 54.5 17 0.00038 29.9 3.7 35 203-240 2-36 (176)
465 TIGR03759 conj_TIGR03759 integ 54.1 56 0.0012 27.4 6.5 80 199-288 110-197 (200)
466 cd03072 PDI_b'_ERp44 PDIb' fam 53.8 66 0.0014 24.1 6.6 50 213-288 30-84 (111)
467 PLN03098 LPA1 LOW PSII ACCUMUL 52.6 1.4E+02 0.003 28.7 9.6 109 186-297 285-431 (453)
468 PRK01655 spxA transcriptional 50.6 34 0.00075 26.6 4.7 44 41-92 2-48 (131)
469 PF13911 AhpC-TSA_2: AhpC/TSA 50.2 27 0.00058 26.3 3.9 54 59-116 2-55 (115)
470 PF01323 DSBA: DSBA-like thior 50.0 27 0.00059 28.7 4.3 40 200-241 1-40 (193)
471 cd03032 ArsC_Spx Arsenate Redu 48.1 48 0.001 25.1 5.0 43 42-92 3-48 (115)
472 TIGR03765 ICE_PFL_4695 integra 47.6 1.2E+02 0.0025 22.7 6.7 66 216-288 37-102 (105)
473 PRK09301 circadian clock prote 47.3 75 0.0016 23.6 5.6 66 196-286 4-69 (103)
474 TIGR02654 circ_KaiB circadian 47.0 80 0.0017 22.7 5.6 64 198-286 3-66 (87)
475 cd03041 GST_N_2GST_N GST_N fam 45.9 37 0.00081 23.3 3.9 19 203-221 4-22 (77)
476 KOG2507 Ubiquitin regulatory p 45.6 92 0.002 29.4 7.1 26 108-133 68-93 (506)
477 cd03051 GST_N_GTT2_like GST_N 45.1 26 0.00057 23.4 3.0 31 203-240 3-33 (74)
478 PF11072 DUF2859: Protein of u 44.3 1.1E+02 0.0025 24.2 6.6 62 216-282 75-136 (142)
479 PRK13344 spxA transcriptional 43.8 41 0.00088 26.3 4.1 45 202-253 3-48 (132)
480 cd00570 GST_N_family Glutathio 43.8 44 0.00096 21.4 3.9 32 203-241 3-34 (71)
481 PF06953 ArsD: Arsenical resis 43.7 1.5E+02 0.0033 22.9 7.9 63 54-134 24-86 (123)
482 cd03025 DsbA_FrnE_like DsbA fa 43.7 37 0.0008 28.0 4.2 27 201-227 3-29 (193)
483 KOG3171 Conserved phosducin-li 41.8 65 0.0014 27.4 5.1 70 198-296 160-229 (273)
484 PF06053 DUF929: Domain of unk 41.6 32 0.00068 30.2 3.4 31 37-67 57-88 (249)
485 cd03074 PDI_b'_Calsequestrin_C 41.2 1.1E+02 0.0024 23.0 5.6 47 35-81 18-64 (120)
486 cd03025 DsbA_FrnE_like DsbA fa 40.5 56 0.0012 26.9 4.8 27 41-67 3-29 (193)
487 cd03035 ArsC_Yffb Arsenate Red 39.9 27 0.00059 26.0 2.5 44 42-92 2-47 (105)
488 cd03045 GST_N_Delta_Epsilon GS 39.0 36 0.00079 22.9 2.9 31 203-240 3-33 (74)
489 KOG2640 Thioredoxin [Function 38.4 18 0.00039 32.5 1.5 29 199-227 78-106 (319)
490 PF13417 GST_N_3: Glutathione 38.2 1.3E+02 0.0027 20.4 6.9 57 44-132 2-58 (75)
491 PF06764 DUF1223: Protein of u 37.5 1.5E+02 0.0032 25.2 6.7 34 203-241 4-37 (202)
492 cd03033 ArsC_15kD Arsenate Red 37.1 66 0.0014 24.3 4.2 47 202-255 3-50 (113)
493 PF09673 TrbC_Ftype: Type-F co 35.9 91 0.002 23.6 4.8 22 105-126 59-80 (113)
494 PF09673 TrbC_Ftype: Type-F co 33.6 1.1E+02 0.0025 23.0 5.0 20 267-286 61-80 (113)
495 cd03059 GST_N_SspA GST_N famil 32.5 78 0.0017 21.0 3.7 17 203-219 3-19 (73)
496 COG2761 FrnE Predicted dithiol 32.3 96 0.0021 26.7 4.8 54 265-334 172-225 (225)
497 PF09822 ABC_transp_aux: ABC-t 31.6 3.6E+02 0.0078 23.7 8.9 53 195-247 23-77 (271)
498 PF10589 NADH_4Fe-4S: NADH-ubi 31.5 27 0.00058 21.7 1.0 22 47-68 17-38 (46)
499 TIGR02742 TrbC_Ftype type-F co 31.1 1.8E+02 0.0039 22.7 5.8 81 41-128 1-82 (130)
500 KOG4614 Inner membrane protein 30.6 67 0.0015 27.8 3.5 35 278-323 248-282 (287)
No 1
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.94 E-value=8.3e-26 Score=179.65 Aligned_cols=130 Identities=51% Similarity=0.911 Sum_probs=118.7
Q ss_pred CceecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccc
Q 018808 180 DFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLAL 259 (350)
Q Consensus 180 ~f~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~ 259 (350)
+|+.+.+|+.+++++++||++||+||++||++|+.++|.|+++++++.+++..+++++|+.|.+.+++.+++++++|..+
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 47788999999999999999999999999999999999999999999876445999999999999999999998888777
Q ss_pred cCCc-hhHHHHHHHcCCCCccEEEEECCCCCEEeccchhhhhhcCCccCCC
Q 018808 260 PFKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPF 309 (350)
Q Consensus 260 ~~~~-~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~p~ 309 (350)
++.. +....+.+.|++.++|+++|||++|+++.+...++...++..+|||
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 7655 5567899999999999999999999999999999999999999997
No 2
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.93 E-value=2e-25 Score=177.65 Aligned_cols=120 Identities=31% Similarity=0.597 Sum_probs=104.6
Q ss_pred ceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcC-----CCcEEEEEEeCCCCHHHHHHhhcCCC--Ccccc
Q 018808 188 RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGK-----GESFEIVLISLDDEEESFKRDLGSMP--WLALP 260 (350)
Q Consensus 188 ~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~-----~~~~~vv~v~~d~~~~~~~~~~~~~~--~~~~~ 260 (350)
..+++++++||+|+|+|||+|||+|++++|.|.+++++++++ +.++++|+|+.|.+.+++.+|+++++ |..+|
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p 95 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP 95 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence 456788999999999999999999999999999999988753 23499999999999999999999886 66667
Q ss_pred CCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchhhhhhcCCccC
Q 018808 261 FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAF 307 (350)
Q Consensus 261 ~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~ 307 (350)
+..+....+.+.|++.++|+++|||++|+|+.+.....+++.|..+|
T Consensus 96 ~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 96 FEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred ccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence 77666678999999999999999999999999998888777765544
No 3
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.91 E-value=4.9e-24 Score=169.56 Aligned_cols=127 Identities=48% Similarity=0.868 Sum_probs=110.4
Q ss_pred eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCC-CCcccc
Q 018808 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM-PWLALP 260 (350)
Q Consensus 182 ~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~-~~~~~~ 260 (350)
+.|.+ +.+++++++||++||+||++||++|+.++|.|+++++++++++.++++++|+.|.+.+++++|++++ .|..++
T Consensus 3 ~~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~ 81 (132)
T cd02964 3 LLDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP 81 (132)
T ss_pred cccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence 44555 6999999999999999999999999999999999999998752349999999999999999999988 677777
Q ss_pred CCc-hhHHHHHHHcCCCCccEEEEECCCCCEEeccchhhhhh-cCCccCCC
Q 018808 261 FKD-KSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEE-HGVGAFPF 309 (350)
Q Consensus 261 ~~~-~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~-~~~~~~p~ 309 (350)
+.. .....+.+.|++.++|+++|||++|+|+++........ ++..+|||
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 654 34567888999999999999999999999998877665 88889997
No 4
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.90 E-value=3.2e-23 Score=164.77 Aligned_cols=129 Identities=55% Similarity=1.134 Sum_probs=117.5
Q ss_pred CceeccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCCccc
Q 018808 21 DFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAV 98 (350)
Q Consensus 21 ~f~~~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~~~~ 98 (350)
+|+.+.+|+.+++++++|| ++|+||++||++|+.++|.|.++++++.+++ .++++.|+.|.+.+.++++++..+|..+
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~ 80 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV 80 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence 4777899999999999999 9999999999999999999999999998652 5999999999999999999999998888
Q ss_pred ccCChhhHHHHHhhcCCCCcceEEEECCCCeEEecCCccceecccCcCCCC
Q 018808 99 PFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPF 149 (350)
Q Consensus 99 ~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~ 149 (350)
++.+.+....+++.|++.++|+++|+|++|+++.+.+.+++..++..+||+
T Consensus 81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 876655667899999999999999999999999999999999999988886
No 5
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.88 E-value=2.3e-22 Score=170.31 Aligned_cols=122 Identities=11% Similarity=0.148 Sum_probs=98.7
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------CCH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEE 244 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~~~ 244 (350)
..+..+|+| +.+.+|+.+++++++||+|||+|||+|||+|+.++|.|++++++++++| ++|++|+++ ++.
T Consensus 14 ~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred hcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecchhccCCCCCCH
Confidence 345678999 7899999999999999999999999999999999999999999999888 999999985 467
Q ss_pred HHHHHhhcCCCCccccCCch------hHHH--------HHHHcCCC-------CccEEEEECCCCCEEeccchh
Q 018808 245 ESFKRDLGSMPWLALPFKDK------SREK--------LARYFELS-------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~------~~~~--------~~~~~~v~-------~~P~~~lid~~G~i~~~~~~~ 297 (350)
+++++|+++++ ++||++.+ .... +...|++. ..|++||||++|+|+.++.|.
T Consensus 92 e~~~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~ 164 (199)
T PTZ00056 92 KDIRKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPR 164 (199)
T ss_pred HHHHHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCC
Confidence 88999998765 67777543 1112 22234332 224899999999999988773
No 6
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.88 E-value=1.6e-22 Score=163.79 Aligned_cols=121 Identities=28% Similarity=0.430 Sum_probs=108.3
Q ss_pred cccccCCc-ee--cCCCceeeccccCCCEEEEEEecc-CCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHH
Q 018808 174 LTSHSRDF-VI--SSDGRKISVSDLEGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 249 (350)
Q Consensus 174 ~~~~~p~f-~~--~~~g~~v~l~~~~gk~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 249 (350)
.|..+|+| +. +.+|+.+++++++||+++|+||++ |||+|+.++|.|.++++++++++ +.+++|+.+.+.. ..+
T Consensus 2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~~~-~~~ 78 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDDPP-VRE 78 (146)
T ss_dssp TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSSHH-HHH
T ss_pred CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCCHH-HHH
Confidence 57889999 64 599999999999999999999999 99999999999999999999888 9999999997776 888
Q ss_pred hhcCCCCccccCCchhHHHHHHHcCCC---------CccEEEEECCCCCEEeccchhh
Q 018808 250 DLGSMPWLALPFKDKSREKLARYFELS---------TLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~v~---------~~P~~~lid~~G~i~~~~~~~~ 298 (350)
++++.. .++++..|.+.++.+.|++. ++|+++|||++|+|++++.+..
T Consensus 79 ~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~ 135 (146)
T PF08534_consen 79 FLKKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPD 135 (146)
T ss_dssp HHHHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSB
T ss_pred HHHhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCC
Confidence 887754 78888899889999999998 9999999999999999998853
No 7
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.88 E-value=1.1e-22 Score=161.84 Aligned_cols=118 Identities=29% Similarity=0.588 Sum_probs=101.3
Q ss_pred CceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC------CEEEEEEECCCCHHHHHhHHhcCC--Cccc
Q 018808 28 GDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG------DFEVIFVSGDEDDEAFKGYFSKMP--WLAV 98 (350)
Q Consensus 28 g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~------~~~~v~i~~d~~~~~~~~~~~~~~--~~~~ 98 (350)
-+.+++++++|| ++|+|||+||++|+.++|.|.++|++++++. ++.+|+|+.|.+.+.+++|+++++ |..+
T Consensus 15 ~~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~ 94 (146)
T cd03008 15 TEREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFL 94 (146)
T ss_pred cccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceee
Confidence 345677899999 9999999999999999999999999887531 599999999998888999999987 6676
Q ss_pred ccCChhhHHHHHhhcCCCCcceEEEECCCCeEEecCCccceecccCcC
Q 018808 99 PFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEG 146 (350)
Q Consensus 99 ~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~ 146 (350)
++.+ +....+++.|++.++|+++|+|++|+++.+++...+..+|..+
T Consensus 95 p~~~-~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~ 141 (146)
T cd03008 95 PFED-EFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPAC 141 (146)
T ss_pred cccc-hHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHH
Confidence 7665 3345899999999999999999999999998888777776544
No 8
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.87 E-value=7.9e-22 Score=156.80 Aligned_cols=127 Identities=48% Similarity=0.979 Sum_probs=108.3
Q ss_pred ceeccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccC-CCEEEEEEECCCCHHHHHhHHhcC-CCccc
Q 018808 22 FLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFSKM-PWLAV 98 (350)
Q Consensus 22 f~~~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~i~~d~~~~~~~~~~~~~-~~~~~ 98 (350)
|+++.+ +++++++++|| ++|+||++||++|+.++|.|++++++++++ .+++++.|++|.+.+.++++.+++ +|..+
T Consensus 2 ~~~~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~ 80 (132)
T cd02964 2 FLLDGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAV 80 (132)
T ss_pred ccccCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEee
Confidence 344444 69999999999 999999999999999999999999999865 259999999999989999999998 57777
Q ss_pred ccCChhhHHHHHhhcCCCCcceEEEECCCCeEEecCCccceec-ccCcCCCC
Q 018808 99 PFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIRE-YGVEGYPF 149 (350)
Q Consensus 99 ~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~-~~~~~~p~ 149 (350)
++.+......+.+.|++.++|+++|+|++|+++.+++...+.. ++..+|||
T Consensus 81 ~~~d~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 81 PFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred ccCcHHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 7765455568889999999999999999999999987765554 78777776
No 9
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.87 E-value=1e-21 Score=168.73 Aligned_cols=124 Identities=21% Similarity=0.311 Sum_probs=101.4
Q ss_pred hhhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------C
Q 018808 171 RSVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------D 242 (350)
Q Consensus 171 ~~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~ 242 (350)
....+..+|+| +.+.+|+.+++++++||++||+||++||++|..++|.|++++++++++| ++|++|++| +
T Consensus 72 ~~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~ 149 (236)
T PLN02399 72 RAATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPG 149 (236)
T ss_pred chhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCC
Confidence 34577889999 7899999999999999999999999999999999999999999999988 999999985 3
Q ss_pred CHHHHHHhhc-CCCCccccCCch--hHH-HHHHHc-------C------CCCccEEEEECCCCCEEeccchh
Q 018808 243 EEESFKRDLG-SMPWLALPFKDK--SRE-KLARYF-------E------LSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 243 ~~~~~~~~~~-~~~~~~~~~~~~--~~~-~~~~~~-------~------v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+.++.++|+. ++. +.||++.+ ..+ .+...| + +...|++||||++|+|+.++.|.
T Consensus 150 s~~ei~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~ 220 (236)
T PLN02399 150 SNPEIKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPT 220 (236)
T ss_pred CHHHHHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCC
Confidence 5678888874 443 67877642 222 222222 2 35579999999999999999884
No 10
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.87 E-value=7.1e-22 Score=155.80 Aligned_cols=107 Identities=19% Similarity=0.288 Sum_probs=98.6
Q ss_pred CceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-----CCHHHHHHhhcCCCCccccC
Q 018808 187 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-----DEEESFKRDLGSMPWLALPF 261 (350)
Q Consensus 187 g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-----~~~~~~~~~~~~~~~~~~~~ 261 (350)
|+.+++++++||++||+||++||++|+.++|.|+++++++++++ +.+++|+.+ ++.++++++++++. +++|+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~-~~~p~ 89 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG--LVVIGVHSPEFAFERDLANVKSAVLRYG-ITYPV 89 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC--eEEEEeccCccccccCHHHHHHHHHHcC-CCCCE
Confidence 57899999999999999999999999999999999999999877 999999873 56788899998876 68999
Q ss_pred CchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 262 KDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 262 ~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+.|....+.+.|++.++|+++|||++|+|++++.|
T Consensus 90 ~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 90 ANDNDYATWRAYGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred EECCchHHHHHhCCCcCCeEEEECCCCcEEEEEec
Confidence 99999999999999999999999999999999877
No 11
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.86 E-value=3.5e-21 Score=149.18 Aligned_cols=111 Identities=20% Similarity=0.353 Sum_probs=95.3
Q ss_pred CCc-eecCCCceeeccccC-CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCC
Q 018808 179 RDF-VISSDGRKISVSDLE-GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPW 256 (350)
Q Consensus 179 p~f-~~~~~g~~v~l~~~~-gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 256 (350)
|+| +.+.+|+.+++++++ ||+++|+||++||++|+.++|.++++++++.++ +.++.++ +.+.++.+++++++..
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~---~~vi~v~-~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADW---LDVVLAS-DGEKAEHQRFLKKHGL 76 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCC---cEEEEEe-CCCHHHHHHHHHHhCC
Confidence 577 678999999999997 999999999999999999999999998887543 8888775 6688889999988775
Q ss_pred ccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccc
Q 018808 257 LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 295 (350)
..+|.+.+ .++.+.|++.++|++++||++|+|+++.+
T Consensus 77 ~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~~ 113 (114)
T cd02967 77 EAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKGL 113 (114)
T ss_pred CCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEeccc
Confidence 45676553 45889999999999999999999998754
No 12
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.86 E-value=1.1e-21 Score=159.91 Aligned_cols=117 Identities=21% Similarity=0.291 Sum_probs=96.8
Q ss_pred cCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------CCHHHHHH
Q 018808 178 SRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEESFKR 249 (350)
Q Consensus 178 ~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~ 249 (350)
+|+| +.+.+|+.+++++++||+|+|+||++||| |+.++|.|+++++++++++ +.+++|+++ ++.+++++
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~ 78 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG--LVVLGFPCNQFGGQEPGSNEEIKE 78 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC--EEEEEeccCccccCCCCCHHHHHH
Confidence 5788 78999999999999999999999999999 9999999999999999887 999999985 34678899
Q ss_pred hhcC-CCCccccCCchh--HHH-HHHHcC--CCCcc-----------EEEEECCCCCEEeccchhh
Q 018808 250 DLGS-MPWLALPFKDKS--REK-LARYFE--LSTLP-----------TLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 250 ~~~~-~~~~~~~~~~~~--~~~-~~~~~~--v~~~P-----------~~~lid~~G~i~~~~~~~~ 298 (350)
|+++ .. ++||++.|. ... ..+.|+ +..+| ++||||++|+|++++.|..
T Consensus 79 f~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~ 143 (152)
T cd00340 79 FCETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTT 143 (152)
T ss_pred HHHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCC
Confidence 9986 44 678877642 222 344454 34566 8999999999999998843
No 13
>PLN02412 probable glutathione peroxidase
Probab=99.86 E-value=2.1e-21 Score=160.25 Aligned_cols=120 Identities=21% Similarity=0.325 Sum_probs=97.7
Q ss_pred cccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------CCHHHH
Q 018808 176 SHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEESF 247 (350)
Q Consensus 176 ~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~ 247 (350)
..+|+| +.+.+|+.+++++++||++||+||++|||+|+.++|.|++++++++++| +.|++|++| ++.++.
T Consensus 7 ~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~~~~~~~~~~~~~~ 84 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCNQFLGQEPGSNEEI 84 (167)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEecccccccCCCCCHHHH
Confidence 568999 7899999999999999999999999999999999999999999999988 999999986 355666
Q ss_pred HHhh-cCCCCccccCCch--hH-HHHHHHcC-------------CCCccEEEEECCCCCEEeccchhh
Q 018808 248 KRDL-GSMPWLALPFKDK--SR-EKLARYFE-------------LSTLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 248 ~~~~-~~~~~~~~~~~~~--~~-~~~~~~~~-------------v~~~P~~~lid~~G~i~~~~~~~~ 298 (350)
.+++ +++. ++||++.+ .. ......|+ +...|++||||++|+|+.++.|..
T Consensus 85 ~~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~ 151 (167)
T PLN02412 85 QQTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTT 151 (167)
T ss_pred HHHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCC
Confidence 6654 5544 77888652 22 12233222 666899999999999999998843
No 14
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.86 E-value=2.4e-21 Score=162.78 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=101.3
Q ss_pred hhcccccCCc-eecCC--Cceeecccc-CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHH
Q 018808 172 SVLTSHSRDF-VISSD--GRKISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~--g~~v~l~~~-~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 247 (350)
...|.++|+| +.+.+ |+.++++++ +||+++|+||++||++|+.++|.|+++++ ++ ++|++|+.+++.++.
T Consensus 39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~--~~vi~v~~~~~~~~~ 112 (185)
T PRK15412 39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKA 112 (185)
T ss_pred hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cC--CEEEEEECCCCHHHH
Confidence 3567889999 67777 467777665 79999999999999999999999988753 35 999999998888888
Q ss_pred HHhhcCCCCcccc-CCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchhh
Q 018808 248 KRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 248 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 298 (350)
.+|++++. .+++ ...|....+.+.||+.++|++|+||++|+|++++.|..
T Consensus 113 ~~~~~~~~-~~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~ 163 (185)
T PRK15412 113 ISWLKELG-NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHAGDL 163 (185)
T ss_pred HHHHHHcC-CCCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEEecCC
Confidence 99988775 4565 35677778899999999999999999999999999854
No 15
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.86 E-value=1.8e-21 Score=153.04 Aligned_cols=116 Identities=34% Similarity=0.553 Sum_probs=106.5
Q ss_pred cccccCCc-eecCCCceeeccccCCCEEEEEEecc-CCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhh
Q 018808 174 LTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 251 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 251 (350)
+|.++|+| +.+.+|+.+++++++||+++|.||++ |||.|+..++.|+++++++++.+ +++++|+.| +.++.+++.
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d-~~~~~~~~~ 77 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTD-DPEEIKQFL 77 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESS-SHHHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeecccc-cccchhhhh
Confidence 57899999 78999999999999999999999999 99999999999999999999887 999999997 555777787
Q ss_pred cCCCCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEec
Q 018808 252 GSMPWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHS 293 (350)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~ 293 (350)
+... +++|+..|...++.+.|++. .+|++||||++|+|+++
T Consensus 78 ~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 78 EEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred hhhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence 7666 78889999999999999998 99999999999999874
No 16
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.85 E-value=2.3e-21 Score=153.16 Aligned_cols=116 Identities=18% Similarity=0.150 Sum_probs=101.3
Q ss_pred ccCCc-eecCCC--ceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcC
Q 018808 177 HSRDF-VISSDG--RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS 253 (350)
Q Consensus 177 ~~p~f-~~~~~g--~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 253 (350)
++|+| +.+.+| +.+++++++||+++|+||++|||+|+.++|.|+++.+++ + +++++|+.+++.+.++++++.
T Consensus 2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~--~~vv~v~~~~~~~~~~~~~~~ 76 (127)
T cd03010 2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---R--VPIYGINYKDNPENALAWLAR 76 (127)
T ss_pred CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---C--cEEEEEECCCCHHHHHHHHHh
Confidence 57899 678888 889999999999999999999999999999999998765 2 899999999899999999887
Q ss_pred CCCccc-cCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchhh
Q 018808 254 MPWLAL-PFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 254 ~~~~~~-~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 298 (350)
+.. .+ ++..|...++++.|++.++|++++||++|+++.+..|..
T Consensus 77 ~~~-~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~ 121 (127)
T cd03010 77 HGN-PYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYKHVGPL 121 (127)
T ss_pred cCC-CCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEEEeccC
Confidence 653 34 345677788999999999999999999999999988843
No 17
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.85 E-value=7.4e-21 Score=158.59 Aligned_cols=124 Identities=27% Similarity=0.432 Sum_probs=113.4
Q ss_pred hhhcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHH
Q 018808 171 RSVLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKR 249 (350)
Q Consensus 171 ~~~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~ 249 (350)
....+..+|+| +.+.+|+.+++++++||+++|+||++||++|+.+.+.|+++++++++++ +++++|++|.+.+++++
T Consensus 34 ~~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vi~i~~d~~~~~~~~ 111 (173)
T PRK03147 34 KVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETELAVKN 111 (173)
T ss_pred ccCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEEcCCCHHHHHH
Confidence 34567889999 7899999999999999999999999999999999999999999999876 99999999999999999
Q ss_pred hhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 250 DLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+.++++ +++++..+...++.+.|++..+|++++||++|+++....|.
T Consensus 112 ~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~ 158 (173)
T PRK03147 112 FVNRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGE 158 (173)
T ss_pred HHHHhC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCC
Confidence 998776 67888888888999999999999999999999999888773
No 18
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.85 E-value=7.4e-21 Score=142.32 Aligned_cols=93 Identities=38% Similarity=0.711 Sum_probs=84.4
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCC--CCccccCCchhHHHHHHHcC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM--PWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 274 (350)
||+++|+||++||++|+.++|.|.++++++++ +.++++|+|++|.+.+++++++++. +|..+++..+....+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 79999999999999999999999999999994 3459999999999999999999977 89999999998899999999
Q ss_pred CCCccEEEEECCCCCE
Q 018808 275 LSTLPTLVIIGPDGKT 290 (350)
Q Consensus 275 v~~~P~~~lid~~G~i 290 (350)
+.++|+++|+|++|+|
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 9999999999999986
No 19
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.84 E-value=1.4e-20 Score=155.45 Aligned_cols=120 Identities=16% Similarity=0.179 Sum_probs=104.6
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccC-CccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSS-YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|..+|+| +.+.+|+.+++++++||+++|+||++| ||+|..+++.|+++++++. + ++|++||.| +....++|
T Consensus 19 ~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~--~~vv~vs~D-~~~~~~~f 93 (167)
T PRK00522 19 QVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--N--TVVLCISAD-LPFAQKRF 93 (167)
T ss_pred CCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--C--cEEEEEeCC-CHHHHHHH
Confidence 468899999 789999999999999999999999999 9999999999999999983 4 999999998 45667888
Q ss_pred hcCCCCccccCCch-hHHHHHHHcCCCCcc---------EEEEECCCCCEEeccchh
Q 018808 251 LGSMPWLALPFKDK-SREKLARYFELSTLP---------TLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 251 ~~~~~~~~~~~~~~-~~~~~~~~~~v~~~P---------~~~lid~~G~i~~~~~~~ 297 (350)
.++++...++++.| ..+.+++.||+...| ++||||++|+|++.+.+.
T Consensus 94 ~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~ 150 (167)
T PRK00522 94 CGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVP 150 (167)
T ss_pred HHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECC
Confidence 88776334788888 456999999998777 999999999999998753
No 20
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.84 E-value=2.9e-20 Score=154.81 Aligned_cols=121 Identities=22% Similarity=0.301 Sum_probs=102.9
Q ss_pred cccccCCc-eecCCC----ceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHH
Q 018808 174 LTSHSRDF-VISSDG----RKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g----~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 247 (350)
+|..+|+| +.+.+| +.+++++++||++||+|| ++||++|..+++.|+++++++.+++ +.+++|++|. .+..
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~-~~~~ 77 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDS-HFSH 77 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCC-HHHH
Confidence 47789999 677776 799999999999999999 8999999999999999999999887 9999999984 3333
Q ss_pred HHhhcCC------CCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccchh
Q 018808 248 KRDLGSM------PWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 248 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++.+.. ..++|+++.|...++++.||+. .+|++||||++|+|++++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~ 139 (173)
T cd03015 78 LAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVND 139 (173)
T ss_pred HHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecC
Confidence 3444432 2367899999999999999986 688999999999999999763
No 21
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.84 E-value=3.3e-20 Score=149.73 Aligned_cols=119 Identities=20% Similarity=0.210 Sum_probs=104.6
Q ss_pred cccccCCc-eecCCCceeeccccCCCEEEEEEeccC-CccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhh
Q 018808 174 LTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSS-YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDL 251 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~ 251 (350)
+|..+|+| +.+.+|+.+++++++||++||+||++| |++|+.+++.|++++++++ + +.+++|++|. .+..+++.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~--~~vi~Is~d~-~~~~~~~~ 76 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--N--TVVLTISADL-PFAQKRWC 76 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--C--CEEEEEECCC-HHHHHHHH
Confidence 47889999 789999999999999999999999998 6999999999999999974 4 9999999985 56667888
Q ss_pred cCCCCccccCCchhH-HHHHHHcCCCC------ccEEEEECCCCCEEeccchh
Q 018808 252 GSMPWLALPFKDKSR-EKLARYFELST------LPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 252 ~~~~~~~~~~~~~~~-~~~~~~~~v~~------~P~~~lid~~G~i~~~~~~~ 297 (350)
+++....++++.|.. ..+.+.||+.. .|++||||++|+|++.+.+.
T Consensus 77 ~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 77 GAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred HhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECC
Confidence 877655788888875 89999999863 79999999999999999874
No 22
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.84 E-value=3e-20 Score=175.80 Aligned_cols=122 Identities=13% Similarity=0.159 Sum_probs=107.5
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-----CCHHH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-----DEEES 246 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-----~~~~~ 246 (350)
..+..+|+| +.+.+|+.+.++ +||+|||+|||+||++|+.++|.|++++++++.++ ++||+|+++ .+.++
T Consensus 33 ~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~~e~~~~~ 108 (521)
T PRK14018 33 TVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFLHEKKDGD 108 (521)
T ss_pred cccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEecccccccccHHH
Confidence 334578999 789999999987 89999999999999999999999999999998666 999999873 35577
Q ss_pred HHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchhh
Q 018808 247 FKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~ 298 (350)
+.++++...+.++|+..|...++.+.|+|.++|+++|||++|+++.+..|.+
T Consensus 109 ~~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~ 160 (521)
T PRK14018 109 FQKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSI 160 (521)
T ss_pred HHHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCC
Confidence 7888877766678888898899999999999999999999999999998854
No 23
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.84 E-value=2.9e-20 Score=151.94 Aligned_cols=120 Identities=21% Similarity=0.261 Sum_probs=107.3
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEecc-CCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
..|..+|+| +.+.+|+.+++++++||++||+||++ ||+.|+.+++.|+++++++++++ +++++|+.| +.+++++|
T Consensus 5 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d-~~~~~~~~ 81 (154)
T PRK09437 5 KAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTD-KPEKLSRF 81 (154)
T ss_pred CCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCC-CHHHHHHH
Confidence 357889999 78999999999999999999999987 68889999999999999999887 999999998 56888899
Q ss_pred hcCCCCccccCCchhHHHHHHHcCCCCc------------cEEEEECCCCCEEeccch
Q 018808 251 LGSMPWLALPFKDKSREKLARYFELSTL------------PTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------P~~~lid~~G~i~~~~~~ 296 (350)
.++++ ++++++.|..+.+.+.||+... |++||||++|+|+..+.|
T Consensus 82 ~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g 138 (154)
T PRK09437 82 AEKEL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDK 138 (154)
T ss_pred HHHhC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcC
Confidence 88775 6788888888899999998654 788999999999999877
No 24
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.83 E-value=2.3e-20 Score=150.06 Aligned_cols=118 Identities=26% Similarity=0.387 Sum_probs=107.0
Q ss_pred ccCCc-eecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCC
Q 018808 177 HSRDF-VISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM 254 (350)
Q Consensus 177 ~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 254 (350)
.+|+| +.+.+|+.+++++++||+++|+|| ++|||.|..+++.|.++++++.+++ +++++|+.| +.+.+.+|.+.+
T Consensus 2 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d-~~~~~~~~~~~~ 78 (140)
T cd03017 2 KAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPD-SVESHAKFAEKY 78 (140)
T ss_pred CCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCC-CHHHHHHHHHHh
Confidence 57889 789999999999999999999999 5899999999999999999998877 999999998 567888888877
Q ss_pred CCccccCCchhHHHHHHHcCCCCc---------cEEEEECCCCCEEeccchhh
Q 018808 255 PWLALPFKDKSREKLARYFELSTL---------PTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~v~~~---------P~~~lid~~G~i~~~~~~~~ 298 (350)
+ +.++++.|.+..+.+.||+... |+++|||++|+|++++.|..
T Consensus 79 ~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~ 130 (140)
T cd03017 79 G-LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVK 130 (140)
T ss_pred C-CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCC
Confidence 6 6788889998999999999888 99999999999999998843
No 25
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.83 E-value=1.9e-20 Score=155.75 Aligned_cols=119 Identities=15% Similarity=0.166 Sum_probs=100.4
Q ss_pred hhcccccCCc-eecCCCc--eeecccc-CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHH
Q 018808 172 SVLTSHSRDF-VISSDGR--KISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~--~v~l~~~-~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 247 (350)
..+|.++|+| +.+.+|+ .++++++ +||+++|+||++|||+|+.++|.++++++ ++ +++++|+.+++.++.
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~--~~vi~V~~~~~~~~~ 107 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DG--LPIVGVDYKDQSQNA 107 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cC--CEEEEEECCCChHHH
Confidence 4568899999 6788886 5555665 78999999999999999999999988754 34 999999998888888
Q ss_pred HHhhcCCCCcccc-CCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 248 KRDLGSMPWLALP-FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 248 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.+|++++. +.++ +..|...++.+.|++.++|++++||++|++++++.|.
T Consensus 108 ~~~~~~~~-~~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~ 157 (173)
T TIGR00385 108 LKFLKELG-NPYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAGP 157 (173)
T ss_pred HHHHHHcC-CCCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEEecc
Confidence 88888776 4565 4567778899999999999999999999999998884
No 26
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.83 E-value=4.5e-20 Score=154.72 Aligned_cols=121 Identities=21% Similarity=0.333 Sum_probs=95.6
Q ss_pred ccccCCc-eecCCCceeeccccCCCE-EEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-------CHH
Q 018808 175 TSHSRDF-VISSDGRKISVSDLEGKT-IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEE 245 (350)
Q Consensus 175 ~~~~p~f-~~~~~g~~v~l~~~~gk~-vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~ 245 (350)
+..+|+| +.+.+|+.+++++++||+ +|+.+||+|||+|+.++|.|+++++++++++ +.|++|++|+ +.+
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~~~~~~~~~~~~~ 94 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPCNQFMEQEPWDEP 94 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEecccccccCCCCHH
Confidence 4578999 789999999999999995 4566799999999999999999999999888 9999999752 457
Q ss_pred HHHHhhcCCCCccccCCch--hH----HHHHH------------HcCCCCccE---EEEECCCCCEEeccchh
Q 018808 246 SFKRDLGSMPWLALPFKDK--SR----EKLAR------------YFELSTLPT---LVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~--~~----~~~~~------------~~~v~~~P~---~~lid~~G~i~~~~~~~ 297 (350)
+..+|+.+...++||+..+ .. ..+.+ .+++.++|+ +||||++|+|++++.|.
T Consensus 95 ~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~ 167 (183)
T PTZ00256 95 EIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPK 167 (183)
T ss_pred HHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCC
Confidence 7888875332367887743 11 12221 235778994 69999999999999874
No 27
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.83 E-value=3.2e-20 Score=145.84 Aligned_cols=122 Identities=36% Similarity=0.651 Sum_probs=112.0
Q ss_pred eecCCCceeecc-ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcC--CCCcc
Q 018808 182 VISSDGRKISVS-DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS--MPWLA 258 (350)
Q Consensus 182 ~~~~~g~~v~l~-~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~--~~~~~ 258 (350)
+.+.+|..+..+ .++||+|.++|.|.|||||+.+.|.|.++|+++++++..++||+||.|.+.+++..|+.+ .+|..
T Consensus 17 l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~ 96 (157)
T KOG2501|consen 17 LRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLA 96 (157)
T ss_pred eeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEE
Confidence 567778777776 689999999999999999999999999999999998888999999999999999999985 57999
Q ss_pred ccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchhhhhhcC
Q 018808 259 LPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHG 303 (350)
Q Consensus 259 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~ 303 (350)
+|+..+..+++.++|+|.++|++.+++++|.++.......+...|
T Consensus 97 iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g 141 (157)
T KOG2501|consen 97 IPFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGG 141 (157)
T ss_pred ecCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhc
Confidence 999999999999999999999999999999999998887766654
No 28
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.83 E-value=4.5e-20 Score=155.49 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=95.9
Q ss_pred hhcccccCCc-eecCCCceeecc--ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHH
Q 018808 172 SVLTSHSRDF-VISSDGRKISVS--DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 248 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~~g~~v~l~--~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~ 248 (350)
..+|..+|+| +.+.+|+.++++ +.+||+++|+||++|||+|+.++|.+.+++++. + +.+++|+. ++.++.+
T Consensus 46 ~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~--~~vv~Is~-~~~~~~~ 119 (189)
T TIGR02661 46 PDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---E--TDVVMISD-GTPAEHR 119 (189)
T ss_pred CCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---C--CcEEEEeC-CCHHHHH
Confidence 3578899999 789999999994 579999999999999999999999999987653 3 67888884 4778888
Q ss_pred HhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEecc
Q 018808 249 RDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSN 294 (350)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~ 294 (350)
+|++++. ++++... ...++.+.|++..+|++++||++|+|+++.
T Consensus 120 ~~~~~~~-~~~~~~~-~~~~i~~~y~v~~~P~~~lID~~G~I~~~g 163 (189)
T TIGR02661 120 RFLKDHE-LGGERYV-VSAEIGMAFQVGKIPYGVLLDQDGKIRAKG 163 (189)
T ss_pred HHHHhcC-CCcceee-chhHHHHhccCCccceEEEECCCCeEEEcc
Confidence 9998775 3443222 356789999999999999999999999874
No 29
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.83 E-value=5e-20 Score=154.95 Aligned_cols=121 Identities=18% Similarity=0.277 Sum_probs=102.0
Q ss_pred hcccccCCc-eec-CCCc--eeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHH
Q 018808 173 VLTSHSRDF-VIS-SDGR--KISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESF 247 (350)
Q Consensus 173 ~~~~~~p~f-~~~-~~g~--~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~ 247 (350)
.+|..+|+| +.+ .+|+ .+++++++||++||+|| ++||++|..+++.|+++++++.+++ ++|++||.|. .+..
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~-~~~~ 79 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDT-HFVH 79 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCC-HHHH
Confidence 578899999 666 5676 68888999999999999 9999999999999999999999887 9999999995 3334
Q ss_pred HHhhcC---CCCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccch
Q 018808 248 KRDLGS---MPWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 248 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~ 296 (350)
++|... ...++||++.|.+.++++.||+. ..|++||||++|+|++.+..
T Consensus 80 ~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~ 137 (187)
T TIGR03137 80 KAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEIT 137 (187)
T ss_pred HHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEe
Confidence 444332 22467889999999999999986 46999999999999998864
No 30
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.83 E-value=1.1e-19 Score=151.14 Aligned_cols=118 Identities=22% Similarity=0.401 Sum_probs=106.9
Q ss_pred ccccCCc-eecCCCceeecccc-CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-------CHH
Q 018808 175 TSHSRDF-VISSDGRKISVSDL-EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEE 245 (350)
Q Consensus 175 ~~~~p~f-~~~~~g~~v~l~~~-~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~ 245 (350)
|..+|+| +.+.+|+.++++++ ++|++||+||++|||.|..+++.|.++++++++++ +++++|++|. +.+
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~--v~~v~is~d~~~~~~~d~~~ 78 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG--VAVVAINSNDIEAYPEDSPE 78 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCC--eEEEEEecCccccccccCHH
Confidence 4578999 78999999999998 89999999999999999999999999999998766 9999999984 678
Q ss_pred HHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccc
Q 018808 246 SFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 295 (350)
+++++++++. +.++++.|....+.+.|++..+|+++|||++|+|+++..
T Consensus 79 ~~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~ 127 (171)
T cd02969 79 NMKAKAKEHG-YPFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGR 127 (171)
T ss_pred HHHHHHHHCC-CCceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeec
Confidence 8999998776 568888898899999999999999999999999997753
No 31
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.82 E-value=7.3e-20 Score=148.74 Aligned_cols=121 Identities=19% Similarity=0.275 Sum_probs=105.7
Q ss_pred cccccCCc-eecCCCceeeccccCC-CEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 174 LTSHSRDF-VISSDGRKISVSDLEG-KTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g~~v~l~~~~g-k~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
+|..+|+| +.+.+|+.+++++++| |+++|.|| ++||++|...++.|+++++++++++ +++++|+.| +.+..++|
T Consensus 3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d-~~~~~~~~ 79 (149)
T cd03018 3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVD-SPFSLRAW 79 (149)
T ss_pred CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCC-CHHHHHHH
Confidence 57789999 7889999999999999 98888887 9999999999999999999998877 999999988 56678888
Q ss_pred hcCCCCccccCCchhH--HHHHHHcCCCC------ccEEEEECCCCCEEeccchhh
Q 018808 251 LGSMPWLALPFKDKSR--EKLARYFELST------LPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~--~~~~~~~~v~~------~P~~~lid~~G~i~~~~~~~~ 298 (350)
.+++. +++|+..|.. .++.+.||+.. .|+++|||++|+|++++.+..
T Consensus 80 ~~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 80 AEENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred HHhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCC
Confidence 88776 6788888866 88999999873 348999999999999998843
No 32
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.82 E-value=6.2e-20 Score=149.69 Aligned_cols=115 Identities=19% Similarity=0.245 Sum_probs=93.7
Q ss_pred Cc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------CCHHHHHHhh
Q 018808 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEESFKRDL 251 (350)
Q Consensus 180 ~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~~ 251 (350)
+| +.+.+|+.+++++++||++||+||++|||+|+.++|.|+++++++++++ +.|++|+++ ++.+..++|+
T Consensus 4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~--~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH--FNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC--eEEEEEeccccccCCCCCHHHHHHHH
Confidence 56 6789999999999999999999999999999999999999999999888 999999962 4567888998
Q ss_pred cC-CCCccccCCch-----hHHHHHHHcC---CCCccE----EEEECCCCCEEeccchh
Q 018808 252 GS-MPWLALPFKDK-----SREKLARYFE---LSTLPT----LVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 252 ~~-~~~~~~~~~~~-----~~~~~~~~~~---v~~~P~----~~lid~~G~i~~~~~~~ 297 (350)
++ ++ ++||++.+ ........|. ...+|+ +||||++|+|+.++.|.
T Consensus 82 ~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~ 139 (153)
T TIGR02540 82 RRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPE 139 (153)
T ss_pred HHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCC
Confidence 75 44 67887654 1111122232 235898 99999999999999884
No 33
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.82 E-value=1.9e-19 Score=145.75 Aligned_cols=116 Identities=32% Similarity=0.576 Sum_probs=98.2
Q ss_pred hcCccCCcee-c--cCCceeecCCCCCc-EEEEEecC-CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhH
Q 018808 15 LSSSARDFLI-R--SNGDQVKLDSLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (350)
Q Consensus 15 ~g~~~p~f~~-~--~~g~~~~l~~~~gk-~~v~F~~~-~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~ 89 (350)
+|+++|+|.+ + .+|+.+++++++|| ++|+||++ |||+|+.++|.+.++++++++++ +.+++|+.+.+.. ++++
T Consensus 2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~-v~~v~v~~~~~~~-~~~~ 79 (146)
T PF08534_consen 2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG-VDVVGVSSDDDPP-VREF 79 (146)
T ss_dssp TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT-CEEEEEEESSSHH-HHHH
T ss_pred CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc-eEEEEecccCCHH-HHHH
Confidence 5999999987 4 89999999999999 99999999 99999999999999999998875 9999999887766 8888
Q ss_pred HhcCCCcccccCChhhHHHHHhhcCCC---------CcceEEEECCCCeEEecC
Q 018808 90 FSKMPWLAVPFSDSETRDKLDELFKVM---------GIPHLVILDENGKVLSDG 134 (350)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~v~~~~ 134 (350)
.+.++....-..| ....+.+.|++. .+|++++||++|+|++..
T Consensus 80 ~~~~~~~~~~~~D--~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 80 LKKYGINFPVLSD--PDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp HHHTTTTSEEEEE--TTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred HHhhCCCceEEec--hHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 8886543333333 445899999998 999999999999999863
No 34
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.82 E-value=1.9e-19 Score=150.27 Aligned_cols=122 Identities=17% Similarity=0.222 Sum_probs=103.0
Q ss_pred hhcccccCCc-ee---cCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHH
Q 018808 172 SVLTSHSRDF-VI---SSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 246 (350)
Q Consensus 172 ~~~~~~~p~f-~~---~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~ 246 (350)
..+|.++|+| .. +-+...+++++++||++||+|| +.|||+|..+++.|+++++++.+.+ +++++||.| +...
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D-~~~~ 78 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTD-THFT 78 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCC-CHHH
Confidence 4578899999 33 3455677889999999999999 9999999999999999999999888 999999998 4455
Q ss_pred HHHhhcCC---CCccccCCchhHHHHHHHcCCC----Cc--cEEEEECCCCCEEeccch
Q 018808 247 FKRDLGSM---PWLALPFKDKSREKLARYFELS----TL--PTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 247 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~----~~--P~~~lid~~G~i~~~~~~ 296 (350)
.++|.+.. ..++||++.|.+.++++.||+. ++ |++||||++|+|++.+..
T Consensus 79 ~~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~ 137 (187)
T PRK10382 79 HKAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVT 137 (187)
T ss_pred HHHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEe
Confidence 55555432 3478999999999999999983 55 999999999999999765
No 35
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=3.7e-19 Score=141.47 Aligned_cols=119 Identities=24% Similarity=0.314 Sum_probs=108.9
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|.++|+| +++.+|+.++|++++||+|||+|| ..++|.|..++..+++.+.++...| .+|++||.| +....++|
T Consensus 5 ~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~D-s~~~~~~F 81 (157)
T COG1225 5 KVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPD-SPKSHKKF 81 (157)
T ss_pred CCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCC-CHHHHHHH
Confidence 468999999 899999999999999999999988 5599999999999999999999988 999999999 77788888
Q ss_pred hcCCCCccccCCchhHHHHHHHcCCC------------CccEEEEECCCCCEEeccc
Q 018808 251 LGSMPWLALPFKDKSREKLARYFELS------------TLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~v~------------~~P~~~lid~~G~i~~~~~ 295 (350)
.+++. ++|+.++|.+.++++.||+. ..+++||||++|+|++.+.
T Consensus 82 ~~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~ 137 (157)
T COG1225 82 AEKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWR 137 (157)
T ss_pred HHHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEec
Confidence 88887 88999999999999999972 4679999999999999983
No 36
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.81 E-value=4.9e-19 Score=137.09 Aligned_cols=109 Identities=22% Similarity=0.484 Sum_probs=92.9
Q ss_pred CCcee-ccCCceeecCCCC-Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCc
Q 018808 20 RDFLI-RSNGDQVKLDSLK-GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWL 96 (350)
Q Consensus 20 p~f~~-~~~g~~~~l~~~~-gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~ 96 (350)
|+|.+ +.+|+.+++++++ || ++|+||++||++|+.++|.+.++++++++ .+.++.++ +.+.++.+++.+.++..
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v~-~~~~~~~~~~~~~~~~~ 77 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLAS-DGEKAEHQRFLKKHGLE 77 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEEe-CCCHHHHHHHHHHhCCC
Confidence 78977 6899999999997 99 99999999999999999999999988854 37788775 67788899999988875
Q ss_pred ccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEecC
Q 018808 97 AVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134 (350)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 134 (350)
.+|+.. ...+.+.|+++.+|+++++|++|++++++
T Consensus 78 ~~p~~~---~~~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 78 AFPYVL---SAELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred CCcEEe---cHHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 555443 13588999999999999999999999863
No 37
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.80 E-value=3.7e-19 Score=139.89 Aligned_cols=114 Identities=32% Similarity=0.597 Sum_probs=98.3
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc-EEEEEecC-CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHh
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~-~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~ 91 (350)
+|+++|+|++ +.+|+++++++++|| ++|.||++ ||++|...++.|.++++++++++ +.+++|+.| +.+..+++.+
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~-~~vi~is~d-~~~~~~~~~~ 78 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG-VQVIGISTD-DPEEIKQFLE 78 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT-EEEEEEESS-SHHHHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce-EEeeecccc-cccchhhhhh
Confidence 5999999988 579999999999999 99999999 99999999999999999999874 999999985 4457888888
Q ss_pred cCCCcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEe
Q 018808 92 KMPWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLS 132 (350)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~ 132 (350)
.++....-+.| ....+.+.|++. .+|+++|+|++|+|++
T Consensus 79 ~~~~~~~~~~D--~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 79 EYGLPFPVLSD--PDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp HHTCSSEEEEE--TTSHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred hhccccccccC--cchHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 77633333333 335899999998 9999999999999987
No 38
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.80 E-value=5.4e-19 Score=141.99 Aligned_cols=119 Identities=24% Similarity=0.293 Sum_probs=106.2
Q ss_pred cCCc-eecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCC
Q 018808 178 SRDF-VISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMP 255 (350)
Q Consensus 178 ~p~f-~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~ 255 (350)
+|+| +.+.+|+.+++++++||+++|+|| ++||++|..+++.|++++++++..+ +.+++|+.| +.+..+++.+++.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d-~~~~~~~~~~~~~ 78 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVD-SPFSHKAWAEKEG 78 (140)
T ss_pred CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CHHHHHHHHhccc
Confidence 6888 789999999999999999999999 7899999999999999999997766 999999997 5677888888874
Q ss_pred CccccCCchhHHHHHHHcCCCCcc---------EEEEECCCCCEEeccchhhh
Q 018808 256 WLALPFKDKSREKLARYFELSTLP---------TLVIIGPDGKTLHSNVAEAI 299 (350)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~v~~~P---------~~~lid~~G~i~~~~~~~~~ 299 (350)
..+++++.|....+.+.||+...| +++|||++|+|++++.+...
T Consensus 79 ~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 79 GLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred CCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 478888889888999999988665 89999999999999988543
No 39
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.80 E-value=5e-19 Score=150.44 Aligned_cols=121 Identities=22% Similarity=0.242 Sum_probs=99.9
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEE-EEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHH--HHH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGL-YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE--SFK 248 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv-~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~--~~~ 248 (350)
.+|..+|+| +.+..| .+++++++||+++| +||++|||+|..+++.|+++++++++++ +++++||+|+... +|.
T Consensus 3 ~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~~~~~~w~ 79 (202)
T PRK13190 3 KLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSIYSHIAWL 79 (202)
T ss_pred CCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHH
Confidence 368899999 666666 69999999997665 6899999999999999999999999888 9999999995432 332
Q ss_pred -HhhcCCC-CccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccch
Q 018808 249 -RDLGSMP-WLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 249 -~~~~~~~-~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~ 296 (350)
++.++.+ .++||++.|.++++++.||+. .+|++||||++|+|++....
T Consensus 80 ~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~ 135 (202)
T PRK13190 80 RDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYY 135 (202)
T ss_pred HhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEe
Confidence 2333333 368999999999999999984 58999999999999987643
No 40
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.79 E-value=6.5e-19 Score=150.54 Aligned_cols=122 Identities=13% Similarity=0.116 Sum_probs=105.1
Q ss_pred hcccccCCc-eecCCCceeeccccCCCE-EEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCC--HHHHH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKT-IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE--EESFK 248 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~-vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~--~~~~~ 248 (350)
.+|..+|+| +.+.+|+.+.+++++||+ ||++||++|||+|..+++.|++++++|.++| +++++||+|+. ...|.
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~ 80 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWV 80 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHH
Confidence 578999999 678899988889999996 4689999999999999999999999999988 99999999963 44566
Q ss_pred HhhcCC--CCccccCCchhHHHHHHHcCCC-------CccEEEEECCCCCEEeccch
Q 018808 249 RDLGSM--PWLALPFKDKSREKLARYFELS-------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 249 ~~~~~~--~~~~~~~~~~~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~~ 296 (350)
+++++. ..++||++.|.+.++++.||+. ..|++||||++|+|+.....
T Consensus 81 ~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~ 137 (215)
T PRK13599 81 EWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYY 137 (215)
T ss_pred HhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEc
Confidence 666543 2378999999999999999983 68999999999999998653
No 41
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.79 E-value=6.8e-19 Score=142.92 Aligned_cols=115 Identities=23% Similarity=0.390 Sum_probs=98.5
Q ss_pred cCCc-eecCCCceeeccccC-CC-EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCC
Q 018808 178 SRDF-VISSDGRKISVSDLE-GK-TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM 254 (350)
Q Consensus 178 ~p~f-~~~~~g~~v~l~~~~-gk-~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 254 (350)
+|+| +.+.+|+.++++++. ++ ++|++||++|||+|+.+++.|+++++++.+++ +++++|+.|.. +...++.+..
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~-~~~~~~~~~~ 78 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESP-EKLEAFDKGK 78 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCH-HHHHHHHHhc
Confidence 6888 788999999999875 34 56666679999999999999999999999877 99999999854 4445666665
Q ss_pred CCccccCCchhHHHHHHHcCCC-----------------------------CccEEEEECCCCCEEeccch
Q 018808 255 PWLALPFKDKSREKLARYFELS-----------------------------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~v~-----------------------------~~P~~~lid~~G~i~~~~~~ 296 (350)
. +++|++.|.+..+.+.||+. .+|++||||++|+|++.+.+
T Consensus 79 ~-~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 79 F-LPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred C-CCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 4 78999999999999999984 79999999999999998765
No 42
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.78 E-value=8.3e-19 Score=141.31 Aligned_cols=117 Identities=25% Similarity=0.400 Sum_probs=98.6
Q ss_pred cCCc-eecCCCceeeccccCCCEEEEEEeccCCcc-ChhhHHHHHHHHHHHhcCC-CcEEEEEEeCCC---CHHHHHHhh
Q 018808 178 SRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKA-SAEFTPRLVEVYEKLKGKG-ESFEIVLISLDD---EEESFKRDL 251 (350)
Q Consensus 178 ~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~-C~~~~~~l~~~~~~~~~~~-~~~~vv~v~~d~---~~~~~~~~~ 251 (350)
+|+| +.+.+|+.+++.+++||+++|+||++||++ |..+++.|+++++++++++ .++++++|+.|. +.+.+++|.
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~ 81 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYA 81 (142)
T ss_pred CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHH
Confidence 6889 789999999999999999999999999997 9999999999999998753 359999999973 568888898
Q ss_pred cCCCCccccCCchh---HHHHHHHcCCCC--------------ccEEEEECCCCCEEeccc
Q 018808 252 GSMPWLALPFKDKS---REKLARYFELST--------------LPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 252 ~~~~~~~~~~~~~~---~~~~~~~~~v~~--------------~P~~~lid~~G~i~~~~~ 295 (350)
++++ .+++++.+. ...+++.||+.. .|++||||++|+|+..+.
T Consensus 82 ~~~~-~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 82 KAFG-PGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred HHhC-CCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence 8775 455655543 478999999754 357999999999998764
No 43
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.78 E-value=1.2e-18 Score=134.47 Aligned_cols=112 Identities=27% Similarity=0.404 Sum_probs=101.6
Q ss_pred eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCC-HHHHHHhhcCCCCcccc
Q 018808 182 VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE-EESFKRDLGSMPWLALP 260 (350)
Q Consensus 182 ~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~~~~~~ 260 (350)
+.+.+|+.+++++++||+++|+||++||++|+..++.|.++.+++.+.+ +.+++|++|.. .+++++++..+. .+++
T Consensus 4 ~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~~~v~~d~~~~~~~~~~~~~~~-~~~~ 80 (116)
T cd02966 4 LPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDPAAVKAFLKKYG-ITFP 80 (116)
T ss_pred ccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCC--eEEEEEECCCCCHHHHHHHHHHcC-CCcc
Confidence 5678999999999999999999999999999999999999999997555 99999999976 999999999886 6778
Q ss_pred CCchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 261 FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 261 ~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+..+...++.+.|++.++|+++|+|++|+++++..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 81 VLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred eEEcCcchHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 877878899999999999999999999999987643
No 44
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.78 E-value=1e-18 Score=138.03 Aligned_cols=112 Identities=20% Similarity=0.350 Sum_probs=95.0
Q ss_pred CccCCcee-ccCC--ceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhc
Q 018808 17 SSARDFLI-RSNG--DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSK 92 (350)
Q Consensus 17 ~~~p~f~~-~~~g--~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~ 92 (350)
.++|+|++ +.+| ..+++++++|| ++|+||++||++|+.+.|.|.++.+++ ++.+++|+.+++.+.++++++.
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~----~~~vv~v~~~~~~~~~~~~~~~ 76 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG----RVPIYGINYKDNPENALAWLAR 76 (127)
T ss_pred CCCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc----CcEEEEEECCCCHHHHHHHHHh
Confidence 36899988 5677 88999999999 999999999999999999999998775 3899999998889999999888
Q ss_pred CCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 93 MPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+.....++ ..|....+++.|++.++|+++++|++|+++++
T Consensus 77 ~~~~~~~~-~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 77 HGNPYAAV-GFDPDGRVGIDLGVYGVPETFLIDGDGIIRYK 116 (127)
T ss_pred cCCCCceE-EECCcchHHHhcCCCCCCeEEEECCCceEEEE
Confidence 76533322 22344689999999999999999999999875
No 45
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.78 E-value=1.4e-17 Score=143.30 Aligned_cols=175 Identities=15% Similarity=0.154 Sum_probs=113.9
Q ss_pred CCCc-EEEEEec---CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 36 LKGK-IGLYFSA---SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 36 ~~gk-~~v~F~~---~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
+++. .++.|++ +||++|+.+.|.+.++.+.+. .+++..+.+|.+.. ..+++
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~---~~~i~~v~vd~~~~----------------------~~l~~ 71 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP---KLKLEIYDFDTPED----------------------KEEAE 71 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC---CceEEEEecCCccc----------------------HHHHH
Confidence 4444 6666877 999999999999999999884 25555666653321 37999
Q ss_pred hcCCCCcceEEEECCCCeEEe-cCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCceecCCCcee
Q 018808 112 LFKVMGIPHLVILDENGKVLS-DGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRKI 190 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~v~~-~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f~~~~~g~~v 190 (350)
.|+|.++|+++++ ++|+.+. + ..|. .....+..++...... +.. +.. .+...+
T Consensus 72 ~~~V~~~Pt~~~f-~~g~~~~~~-------~~G~----~~~~~l~~~i~~~~~~---~~~----~~~-------L~~~~~ 125 (215)
T TIGR02187 72 KYGVERVPTTIIL-EEGKDGGIR-------YTGI----PAGYEFAALIEDIVRV---SQG----EPG-------LSEKTV 125 (215)
T ss_pred HcCCCccCEEEEE-eCCeeeEEE-------Eeec----CCHHHHHHHHHHHHHh---cCC----CCC-------CCHHHH
Confidence 9999999999999 4666542 2 1121 1223344444322111 000 000 111111
Q ss_pred -eccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHH
Q 018808 191 -SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 269 (350)
Q Consensus 191 -~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (350)
.+..+.+.++++.||++||++|+.+.+.++++..+.. ++.+..|+.+.. .++
T Consensus 126 ~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~----~i~~~~vD~~~~-----------------------~~~ 178 (215)
T TIGR02187 126 ELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND----KILGEMIEANEN-----------------------PDL 178 (215)
T ss_pred HHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC----ceEEEEEeCCCC-----------------------HHH
Confidence 1123455667777999999999999998888876632 277777766643 558
Q ss_pred HHHcCCCCccEEEEECCCCC
Q 018808 270 ARYFELSTLPTLVIIGPDGK 289 (350)
Q Consensus 270 ~~~~~v~~~P~~~lid~~G~ 289 (350)
++.|+|.++|++++. .+|+
T Consensus 179 ~~~~~V~~vPtl~i~-~~~~ 197 (215)
T TIGR02187 179 AEKYGVMSVPKIVIN-KGVE 197 (215)
T ss_pred HHHhCCccCCEEEEe-cCCE
Confidence 899999999999887 5675
No 46
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.78 E-value=4e-18 Score=143.28 Aligned_cols=116 Identities=20% Similarity=0.308 Sum_probs=94.0
Q ss_pred hhhhcCccCCcee-ccC--CceeecCCC-CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHH
Q 018808 12 QSLLSSSARDFLI-RSN--GDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (350)
Q Consensus 12 ~~~~g~~~p~f~~-~~~--g~~~~l~~~-~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~ 86 (350)
...+|.++|+|++ +.+ |+.++++++ +|| ++|+||++||++|+.++|.|.++++ + .+++++|+.+++.+..
T Consensus 38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~-~~~vi~v~~~~~~~~~ 112 (185)
T PRK15412 38 SALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----Q-GIRVVGMNYKDDRQKA 112 (185)
T ss_pred hhhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----c-CCEEEEEECCCCHHHH
Confidence 3567999999988 455 577777765 799 9999999999999999999988754 3 3889999988888889
Q ss_pred HhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 87 KGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
++|++.++.....+. .|....+.+.|++.++|+++++|++|++++.
T Consensus 113 ~~~~~~~~~~~~~~~-~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~ 158 (185)
T PRK15412 113 ISWLKELGNPYALSL-FDGDGMLGLDLGVYGAPETFLIDGNGIIRYR 158 (185)
T ss_pred HHHHHHcCCCCceEE-EcCCccHHHhcCCCcCCeEEEECCCceEEEE
Confidence 999988764322211 2334578889999999999999999999885
No 47
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.78 E-value=3.5e-18 Score=127.77 Aligned_cols=92 Identities=46% Similarity=0.927 Sum_probs=80.9
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcC--CCcccccCChhhHHHHHhhcC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM--PWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~ 114 (350)
|| ++|+||++||++|+.+.|.|.+++++++++.++++|+|+.|.+.+.++++++.. +|.++++.+.. +..+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDN-NSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHH-HHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcch-HHHHHHHCC
Confidence 78 999999999999999999999999999954479999999999999999999988 88888877544 569999999
Q ss_pred CCCcceEEEECCCCeE
Q 018808 115 VMGIPHLVILDENGKV 130 (350)
Q Consensus 115 v~~~P~~~lid~~G~v 130 (350)
+.++|+++|+|++|+|
T Consensus 80 i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 80 INGIPTLVLLDPDGKI 95 (95)
T ss_dssp -TSSSEEEEEETTSBE
T ss_pred CCcCCEEEEECCCCCC
Confidence 9999999999999986
No 48
>PRK15000 peroxidase; Provisional
Probab=99.78 E-value=2e-18 Score=146.26 Aligned_cols=123 Identities=18% Similarity=0.287 Sum_probs=99.3
Q ss_pred hcccccCCc-eecC--CCce---eecccc-CCCEEEEEEecc-CCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCH
Q 018808 173 VLTSHSRDF-VISS--DGRK---ISVSDL-EGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE 244 (350)
Q Consensus 173 ~~~~~~p~f-~~~~--~g~~---v~l~~~-~gk~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~ 244 (350)
.+|..+|+| +.+. +|+. .+++++ +||+++|+||+. ||++|..+++.|+++++++++++ ++|++||+|+..
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~~ 80 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSEF 80 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHH
Confidence 478899999 5554 3454 455555 799999999995 99999999999999999999888 999999999532
Q ss_pred --HHHHH-hhcCCC--CccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccchh
Q 018808 245 --ESFKR-DLGSMP--WLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 245 --~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~ 297 (350)
..|.+ +.+... .++||++.|.+.++++.||+. ++|++||||++|+|++...+.
T Consensus 81 ~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~ 144 (200)
T PRK15000 81 VHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVND 144 (200)
T ss_pred HHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecC
Confidence 33333 222222 368999999999999999997 799999999999999988764
No 49
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.78 E-value=1.7e-18 Score=148.94 Aligned_cols=121 Identities=22% Similarity=0.382 Sum_probs=94.2
Q ss_pred chhhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------C
Q 018808 11 IQSLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------E 81 (350)
Q Consensus 11 ~~~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~ 81 (350)
.....|+.+|+|++ +.+|+.+++++++|| ++|+||++||+.|..++|.|.+++++|++++ +.+++|+++ +
T Consensus 71 ~~~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G-v~VIgV~~d~~~~~e~~ 149 (236)
T PLN02399 71 ARAATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG-FEILAFPCNQFGGQEPG 149 (236)
T ss_pred cchhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC-cEEEEEecccccccCCC
Confidence 34457999999988 689999999999999 9999999999999999999999999999885 999999975 3
Q ss_pred CHHHHHhHHh-cCCCcccccCC-hhhHH-HHHhhc-------C------CCCcceEEEECCCCeEEec
Q 018808 82 DDEAFKGYFS-KMPWLAVPFSD-SETRD-KLDELF-------K------VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~-~~~~~-~l~~~~-------~------v~~~P~~~lid~~G~v~~~ 133 (350)
+.+++++++. +++ ..+|+.. .+.+. ..+..| + +++.|+++|||++|+++++
T Consensus 150 s~~ei~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~ 216 (236)
T PLN02399 150 SNPEIKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVER 216 (236)
T ss_pred CHHHHHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEE
Confidence 5567888873 444 3344432 22111 222222 2 3567999999999999986
No 50
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.77 E-value=2.7e-18 Score=146.81 Aligned_cols=123 Identities=14% Similarity=0.151 Sum_probs=101.0
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEE-EEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHH--HHH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGL-YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE--SFK 248 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv-~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~--~~~ 248 (350)
.+|..+|+| +.+.+|+....++++||+++| +||++||++|..+++.|++++++|+++| ++|++||+|+... +|.
T Consensus 8 ~iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~aw~ 85 (215)
T PRK13191 8 LIGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIEWV 85 (215)
T ss_pred cCCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHH
Confidence 578999999 677888744335589996554 8899999999999999999999999988 9999999996433 455
Q ss_pred HhhcCC--CCccccCCchhHHHHHHHcCCC-------CccEEEEECCCCCEEeccchh
Q 018808 249 RDLGSM--PWLALPFKDKSREKLARYFELS-------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 249 ~~~~~~--~~~~~~~~~~~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~~~ 297 (350)
++.++. ..++||++.|.+.++++.||+. ..|++||||++|+|++...+.
T Consensus 86 ~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~ 143 (215)
T PRK13191 86 MWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYP 143 (215)
T ss_pred hhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecC
Confidence 555431 1478999999999999999973 479999999999999987653
No 51
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.77 E-value=4.7e-18 Score=144.76 Aligned_cols=121 Identities=17% Similarity=0.222 Sum_probs=97.6
Q ss_pred cccccCCc-eecCCCceeeccccCC-CE-EEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCH--HHHH
Q 018808 174 LTSHSRDF-VISSDGRKISVSDLEG-KT-IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEE--ESFK 248 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g~~v~l~~~~g-k~-vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~--~~~~ 248 (350)
+|..+|+| +.+.+| .+++++++| |+ +|++||++|||.|..+++.|++++++++++| +++++||+|... .++.
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~~~~~~~~ 77 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSVESHIKWI 77 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHH
Confidence 47789999 667777 589999988 64 5668999999999999999999999999988 999999999532 2233
Q ss_pred HhhcCC--CCccccCCchhHHHHHHHcCCC--------CccEEEEECCCCCEEeccchh
Q 018808 249 RDLGSM--PWLALPFKDKSREKLARYFELS--------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 249 ~~~~~~--~~~~~~~~~~~~~~~~~~~~v~--------~~P~~~lid~~G~i~~~~~~~ 297 (350)
+.+..+ ..++||++.|.+.++++.||+. ..|++||||++|+|+....+.
T Consensus 78 ~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~ 136 (203)
T cd03016 78 EDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYP 136 (203)
T ss_pred hhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecC
Confidence 322221 3478999999999999999985 245799999999999887653
No 52
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.77 E-value=2.5e-18 Score=134.93 Aligned_cols=110 Identities=17% Similarity=0.355 Sum_probs=96.9
Q ss_pred CCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-CHHHHHHhhcCCCC
Q 018808 179 RDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-EEESFKRDLGSMPW 256 (350)
Q Consensus 179 p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-~~~~~~~~~~~~~~ 256 (350)
|+| +.+.+|+.+++++++||+++|+||++||++|+.++|.|.+++++ +.+++|+.|. +.++++++.+++.
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~- 72 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKG- 72 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcC-
Confidence 677 78899999999999999999999999999999999999999766 4577888875 5888899988876
Q ss_pred ccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 257 LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
++++...+.+.++.+.|++.++|+++|+|++| ++.+..|.
T Consensus 73 ~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~ 112 (123)
T cd03011 73 YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFVTTGV 112 (123)
T ss_pred CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEEEecc
Confidence 67888888888999999999999999999999 88888773
No 53
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.77 E-value=9.8e-19 Score=142.40 Aligned_cols=113 Identities=23% Similarity=0.373 Sum_probs=87.8
Q ss_pred ccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCHHHHHh
Q 018808 18 SARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKG 88 (350)
Q Consensus 18 ~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~~~~~~ 88 (350)
.+|+|++ +.+|+++++++++|| ++|+||++||+ |+.++|.|.+++++|++++ +.+++|+++ ++.+.+++
T Consensus 1 ~~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~ 78 (152)
T cd00340 1 SIYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG-LVVLGFPCNQFGGQEPGSNEEIKE 78 (152)
T ss_pred CcceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC-EEEEEeccCccccCCCCCHHHHHH
Confidence 3689988 689999999999999 99999999999 9999999999999998775 999999875 34577889
Q ss_pred HHhc-CCCcccccCC-hhhHHH-HHhhcC--CCCcc-----------eEEEECCCCeEEec
Q 018808 89 YFSK-MPWLAVPFSD-SETRDK-LDELFK--VMGIP-----------HLVILDENGKVLSD 133 (350)
Q Consensus 89 ~~~~-~~~~~~~~~~-~~~~~~-l~~~~~--v~~~P-----------~~~lid~~G~v~~~ 133 (350)
|+++ ++. .+|+.. .+.+.. ....|+ +..+| +++|||++|+++++
T Consensus 79 f~~~~~~~-~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~ 138 (152)
T cd00340 79 FCETNYGV-TFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKR 138 (152)
T ss_pred HHHHhcCC-CceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEE
Confidence 9876 553 444432 211111 233344 34455 89999999999985
No 54
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.76 E-value=5.1e-18 Score=147.75 Aligned_cols=124 Identities=15% Similarity=0.194 Sum_probs=100.8
Q ss_pred hhhcccccCCc-eec-CCC--ceeecccc-CCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCC-
Q 018808 171 RSVLTSHSRDF-VIS-SDG--RKISVSDL-EGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDE- 243 (350)
Q Consensus 171 ~~~~~~~~p~f-~~~-~~g--~~v~l~~~-~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~- 243 (350)
...+|..+|+| +.+ .+| +.++++++ +||++|++|| ++|||+|..+++.|++++++++++| ++|++||.|+.
T Consensus 67 ~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~ 144 (261)
T PTZ00137 67 SSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPF 144 (261)
T ss_pred cccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHH
Confidence 34789999999 555 344 46899997 8887777777 8999999999999999999999988 99999999962
Q ss_pred -HHHHHHh-hcC--CCCccccCCchhHHHHHHHcCCC-----CccEEEEECCCCCEEeccch
Q 018808 244 -EESFKRD-LGS--MPWLALPFKDKSREKLARYFELS-----TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 244 -~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~v~-----~~P~~~lid~~G~i~~~~~~ 296 (350)
..+|.+. .++ ...++||++.|.+.++++.||+. ..|++||||++|+|++....
T Consensus 145 ~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~~~ 206 (261)
T PTZ00137 145 SHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVAVY 206 (261)
T ss_pred HHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEEEe
Confidence 2333332 222 13478999999999999999985 58999999999999998854
No 55
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.76 E-value=3.7e-18 Score=176.63 Aligned_cols=123 Identities=20% Similarity=0.286 Sum_probs=106.4
Q ss_pred hhcccccCCc-eec--CCCceeec-cccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeC---C--C
Q 018808 172 SVLTSHSRDF-VIS--SDGRKISV-SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL---D--D 242 (350)
Q Consensus 172 ~~~~~~~p~f-~~~--~~g~~v~l-~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~---d--~ 242 (350)
...+..+|+| ..+ .+|+.+++ ++++||+|||+|||+||++|+.++|.|+++++++++++ +.|++|++ | .
T Consensus 391 ~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~--~~vvgV~~~~~D~~~ 468 (1057)
T PLN02919 391 KKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP--FTVVGVHSAKFDNEK 468 (1057)
T ss_pred cccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC--eEEEEEecccccccc
Confidence 3457889999 433 68899988 68999999999999999999999999999999998877 99999985 3 2
Q ss_pred CHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 243 EEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+.+++++++.+++ +++|+..|....+.+.|++.++|+++|||++|+++.+..|.
T Consensus 469 ~~~~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~~~G~ 522 (1057)
T PLN02919 469 DLEAIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQLSGE 522 (1057)
T ss_pred cHHHHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEEEecc
Confidence 5677888887765 67787788888999999999999999999999999998774
No 56
>PTZ00102 disulphide isomerase; Provisional
Probab=99.76 E-value=3.7e-17 Score=158.01 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=62.3
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.||.|+|+||++||++|+.+.|.+.++++.+++. ..+.+..++++.+ ...++.|++
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~v~~~~id~~~~-----------------------~~~~~~~~v 429 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN-DSIIVAKMNGTAN-----------------------ETPLEEFSW 429 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CcEEEEEEECCCC-----------------------ccchhcCCC
Confidence 4789999999999999999999999999988764 2477777777643 235778999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|++++++++|++..++.|
T Consensus 430 ~~~Pt~~~~~~~~~~~~~~~G 450 (477)
T PTZ00102 430 SAFPTILFVKAGERTPIPYEG 450 (477)
T ss_pred cccCeEEEEECCCcceeEecC
Confidence 999999999887776555555
No 57
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.76 E-value=4.1e-18 Score=144.28 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=92.3
Q ss_pred hhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCH
Q 018808 13 SLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDD 83 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~ 83 (350)
...+..+|+|++ +.+|+.+++++++|| ++|+||++||++|+.++|.|.+++++|++++ +++++|+++ ++.
T Consensus 13 ~~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g-~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 13 DELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG-LEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc-eEEEEecchhccCCCCCCH
Confidence 345788999988 689999999999999 9999999999999999999999999999885 999999974 456
Q ss_pred HHHHhHHhcCCCcccccC-C----hhhHHH--------HHhhcCC-------CCcceEEEECCCCeEEecC
Q 018808 84 EAFKGYFSKMPWLAVPFS-D----SETRDK--------LDELFKV-------MGIPHLVILDENGKVLSDG 134 (350)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~-~----~~~~~~--------l~~~~~v-------~~~P~~~lid~~G~v~~~~ 134 (350)
+.+++|++.++. .+++. + ...... +...|++ .+-|+++|||++|+++.+.
T Consensus 92 e~~~~f~~~~~~-~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~ 161 (199)
T PTZ00056 92 KDIRKFNDKNKI-KYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYF 161 (199)
T ss_pred HHHHHHHHHcCC-CceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEe
Confidence 789999988764 33432 1 111111 2223433 2224799999999999753
No 58
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.76 E-value=2.4e-18 Score=141.80 Aligned_cols=107 Identities=12% Similarity=0.089 Sum_probs=87.3
Q ss_pred CCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEE------EEEeCCCCHHHHHHhhc----CC
Q 018808 185 SDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEI------VLISLDDEEESFKRDLG----SM 254 (350)
Q Consensus 185 ~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~v------v~v~~d~~~~~~~~~~~----~~ 254 (350)
.+.+.++.++++||+.||+|||+||++|+.+.|.|.++ ++++ +.+ ++|+.|+.......|++ +.
T Consensus 47 ~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~--~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~ 120 (184)
T TIGR01626 47 TVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAK--FPPVKYQTTTIINADDAIVGTGMFVKSSAKKG 120 (184)
T ss_pred ccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcC--CCcccccceEEEECccchhhHHHHHHHHHHHh
Confidence 34567888899999999999999999999999999998 4444 777 99999986655444543 33
Q ss_pred CCcccc---CCchhHHHHHHHcCCCCccEE-EEECCCCCEEeccchhh
Q 018808 255 PWLALP---FKDKSREKLARYFELSTLPTL-VIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 255 ~~~~~~---~~~~~~~~~~~~~~v~~~P~~-~lid~~G~i~~~~~~~~ 298 (350)
. ..+| +..|..+.+...||+.++|++ ||||++|+|++++.|..
T Consensus 121 ~-~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l 167 (184)
T TIGR01626 121 K-KENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGAL 167 (184)
T ss_pred c-ccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCC
Confidence 2 3344 777778889999999999988 89999999999999954
No 59
>PLN02412 probable glutathione peroxidase
Probab=99.76 E-value=2.5e-18 Score=141.94 Aligned_cols=115 Identities=23% Similarity=0.380 Sum_probs=88.6
Q ss_pred CccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-------CHHHHH
Q 018808 17 SSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DDEAFK 87 (350)
Q Consensus 17 ~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~-------~~~~~~ 87 (350)
+.+|+|++ +.+|+.+++++++|| ++|+||++||+.|..++|.|.+++++|++++ +.+++|+++. +.+++.
T Consensus 7 ~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g-~~vvgv~~~~~~~~~~~~~~~~~ 85 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG-FEILAFPCNQFLGQEPGSNEEIQ 85 (167)
T ss_pred CCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC-cEEEEecccccccCCCCCHHHHH
Confidence 67999988 689999999999999 9999999999999999999999999999885 9999999863 445655
Q ss_pred hHH-hcCCCcccccCCh-hhH-HHHHhhc-----------C--CCCcceEEEECCCCeEEec
Q 018808 88 GYF-SKMPWLAVPFSDS-ETR-DKLDELF-----------K--VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~-~~~~~~~~~~~~~-~~~-~~l~~~~-----------~--v~~~P~~~lid~~G~v~~~ 133 (350)
+++ +.++ ..+|+... +.+ ...+..| + +.+.|+++|||++|+++.+
T Consensus 86 ~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~ 146 (167)
T PLN02412 86 QTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQR 146 (167)
T ss_pred HHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEE
Confidence 554 5544 34454321 111 1222222 2 6678999999999999985
No 60
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.75 E-value=2.1e-17 Score=137.67 Aligned_cols=117 Identities=26% Similarity=0.570 Sum_probs=102.2
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHh
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~ 91 (350)
-+|+.+|+|++ +.+|+.+++++++|| ++|+||++||+.|+...+.|.+++++++++ ++.++.|++|.+.+.++.+.+
T Consensus 36 ~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~ 114 (173)
T PRK03147 36 QVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVN 114 (173)
T ss_pred CCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHH
Confidence 36899999988 689999999999999 999999999999999999999999999876 499999999999999999998
Q ss_pred cCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 92 KMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.++.. +++. .+.+..+++.|++..+|+++++|++|+++..
T Consensus 115 ~~~~~-~~~~-~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 115 RYGLT-FPVA-IDKGRQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred HhCCC-ceEE-ECCcchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 87643 3332 2344689999999999999999999999864
No 61
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.75 E-value=2.9e-17 Score=136.57 Aligned_cols=116 Identities=18% Similarity=0.355 Sum_probs=99.9
Q ss_pred cCccCCcee-ccCCceeecCCC-CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-------CHHH
Q 018808 16 SSSARDFLI-RSNGDQVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-------DDEA 85 (350)
Q Consensus 16 g~~~p~f~~-~~~g~~~~l~~~-~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~-------~~~~ 85 (350)
|+.+|+|.+ +.+|+.++++++ +|+ ++|+||++|||.|..+++.|.+++++++++ ++.+++|++|. +.+.
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~-~v~~v~is~d~~~~~~~d~~~~ 79 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAK-GVAVVAINSNDIEAYPEDSPEN 79 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhC-CeEEEEEecCccccccccCHHH
Confidence 678999988 679999999998 888 999999999999999999999999999876 49999999875 5778
Q ss_pred HHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEecC
Q 018808 86 FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDG 134 (350)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 134 (350)
++++.+.++....-+.| ....+++.|++...|+++|+|++|++++..
T Consensus 80 ~~~~~~~~~~~~~~l~D--~~~~~~~~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 80 MKAKAKEHGYPFPYLLD--ETQEVAKAYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred HHHHHHHCCCCceEEEC--CchHHHHHcCCCcCCcEEEECCCCeEEEee
Confidence 89998887755333333 335899999999999999999999999864
No 62
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.75 E-value=1.5e-17 Score=140.19 Aligned_cols=112 Identities=21% Similarity=0.407 Sum_probs=93.0
Q ss_pred hhcCccCCcee-ccCCceeecC--CCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLD--SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGY 89 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~--~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~ 89 (350)
.+|+.+|+|++ +.+|+.++++ +++|| ++|+||++|||+|+.++|.+.+++++. .+.++.|+ +++.++.++|
T Consensus 47 ~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~----~~~vv~Is-~~~~~~~~~~ 121 (189)
T TIGR02661 47 DVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE----ETDVVMIS-DGTPAEHRRF 121 (189)
T ss_pred CCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc----CCcEEEEe-CCCHHHHHHH
Confidence 57999999998 6899999994 57999 999999999999999999999988764 25678887 4567788899
Q ss_pred HhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 90 FSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+++++.....+. . ..++.+.|++..+|+.+++|++|++++.
T Consensus 122 ~~~~~~~~~~~~-~--~~~i~~~y~v~~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 122 LKDHELGGERYV-V--SAEIGMAFQVGKIPYGVLLDQDGKIRAK 162 (189)
T ss_pred HHhcCCCcceee-c--hhHHHHhccCCccceEEEECCCCeEEEc
Confidence 988875433332 2 2478899999999999999999999875
No 63
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.75 E-value=1.7e-17 Score=141.02 Aligned_cols=122 Identities=19% Similarity=0.253 Sum_probs=101.3
Q ss_pred hcccccCCc-ee----cCCCceeeccccCCCEEEEEEec-cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHH
Q 018808 173 VLTSHSRDF-VI----SSDGRKISVSDLEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 246 (350)
Q Consensus 173 ~~~~~~p~f-~~----~~~g~~v~l~~~~gk~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~ 246 (350)
.+|.++|+| +. +.+|+.+++++++||+++|+||+ .||+.|..+++.|.++++++.++| ++|++||+|.....
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~d~~~~~ 84 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSMDSEYAH 84 (199)
T ss_pred ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHHHH
Confidence 578899999 33 35668999999999999999995 789999999999999999999988 99999999964432
Q ss_pred HHHhhc---C---CCCccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccchh
Q 018808 247 FKRDLG---S---MPWLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 247 ~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++.. . ...++||++.|.++++++.||+. .+|++||||++|+|++...+.
T Consensus 85 -~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~ 146 (199)
T PTZ00253 85 -LQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVND 146 (199)
T ss_pred -HHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecC
Confidence 22211 1 22478999999999999999985 479999999999999987663
No 64
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.75 E-value=8.4e-18 Score=132.51 Aligned_cols=104 Identities=21% Similarity=0.230 Sum_probs=88.8
Q ss_pred CCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-----CCHHHHHhHHhcCCCccccc
Q 018808 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-----EDDEAFKGYFSKMPWLAVPF 100 (350)
Q Consensus 27 ~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-----~~~~~~~~~~~~~~~~~~~~ 100 (350)
.|+++++++++|| ++|+||++||++|..++|.|+++++++++++ +.+++|+.+ .+.+.++++.++++....-.
T Consensus 12 ~~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~-~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 12 TDKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG-LVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred CCCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC-eEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence 4578999999999 9999999999999999999999999999774 999999763 45778888988887643333
Q ss_pred CChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 101 SDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 101 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.| ....+.+.|++.++|++++||++|++++.
T Consensus 91 ~D--~~~~~~~~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 91 ND--NDYATWRAYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred EC--CchHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence 33 34588999999999999999999999985
No 65
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.74 E-value=1.2e-17 Score=137.88 Aligned_cols=117 Identities=22% Similarity=0.219 Sum_probs=98.0
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCC-ChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASW-CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~-C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
.+|+++|+|++ +.+|+.+++++++|| ++|+||++| |++|..++|.|.++++++. ++++++|+.|. ....++|.
T Consensus 19 ~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~-~~~~~~f~ 94 (167)
T PRK00522 19 QVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADL-PFAQKRFC 94 (167)
T ss_pred CCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCC-HHHHHHHH
Confidence 36999999988 679999999999999 999999999 9999999999999999983 49999999875 45678888
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCCCcc---------eEEEECCCCeEEecC
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVMGIP---------HLVILDENGKVLSDG 134 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P---------~~~lid~~G~v~~~~ 134 (350)
+.++...+++........+++.||+...| +++|||++|+|++..
T Consensus 95 ~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~ 147 (167)
T PRK00522 95 GAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSE 147 (167)
T ss_pred HhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEE
Confidence 88876545544332344899999998777 999999999999863
No 66
>PRK13189 peroxiredoxin; Provisional
Probab=99.74 E-value=1.9e-17 Score=142.39 Aligned_cols=121 Identities=16% Similarity=0.237 Sum_probs=97.9
Q ss_pred hcccccCCc-eecCCCceeeccc-cCCCE-EEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHH--HH
Q 018808 173 VLTSHSRDF-VISSDGRKISVSD-LEGKT-IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE--SF 247 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~-~~gk~-vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~--~~ 247 (350)
.+|..+|+| +.+.+|+ +++++ ++||+ +|++||++|||.|..+++.|++++++|++++ ++|++||+|+... +|
T Consensus 10 ~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~~h~aw 86 (222)
T PRK13189 10 LIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVFSHIKW 86 (222)
T ss_pred cCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHH
Confidence 578999999 6777775 67766 59995 5568899999999999999999999999888 9999999995432 23
Q ss_pred HHhhc-CCC-CccccCCchhHHHHHHHcCCC-------CccEEEEECCCCCEEeccch
Q 018808 248 KRDLG-SMP-WLALPFKDKSREKLARYFELS-------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 248 ~~~~~-~~~-~~~~~~~~~~~~~~~~~~~v~-------~~P~~~lid~~G~i~~~~~~ 296 (350)
.+... ..+ .++||++.|.+.++++.||+. .+|++||||++|+|++....
T Consensus 87 ~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~ 144 (222)
T PRK13189 87 VEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYY 144 (222)
T ss_pred HHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEec
Confidence 33222 122 378999999999999999975 57999999999999988764
No 67
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.74 E-value=7.4e-17 Score=152.88 Aligned_cols=134 Identities=16% Similarity=0.262 Sum_probs=105.5
Q ss_pred hhhcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-----CCHHH
Q 018808 13 SLLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-----EDDEA 85 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-----~~~~~ 85 (350)
...++.+|+|++ +.+|++++++ +|| ++|+||++||++|+.++|.|.+++++++.+ ++.++.|+.+ .+.+.
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~ 108 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGD 108 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHH
Confidence 345678999977 7899999998 899 999999999999999999999999999865 4899999763 34567
Q ss_pred HHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHHH
Q 018808 86 FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQE 161 (350)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~ 161 (350)
++++.+..++..+++. .|....+++.|++.++|+++|+|++|+++... .| ....+.+.+++...
T Consensus 109 ~~~~~~~~~y~~~pV~-~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~-------~G----~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 109 FQKWYAGLDYPKLPVL-TDNGGTLAQSLNISVYPSWAIIGKDGDVQRIV-------KG----SISEAQALALIRNP 172 (521)
T ss_pred HHHHHHhCCCccccee-ccccHHHHHHcCCCCcCeEEEEcCCCeEEEEE-------eC----CCCHHHHHHHHHHh
Confidence 7787777766555543 24456899999999999999999999998742 22 23456666666543
No 68
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.74 E-value=1.6e-17 Score=133.97 Aligned_cols=115 Identities=22% Similarity=0.214 Sum_probs=95.4
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc-EEEEEecCC-ChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHh
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASW-CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~-C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~ 91 (350)
+|+++|+|++ +.+|+.+++++++|| ++|+||++| |++|+.+++.|.+++++++ ++.+++|+.|. .+..++|.+
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d~-~~~~~~~~~ 77 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISADL-PFAQKRWCG 77 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECCC-HHHHHHHHH
Confidence 5899999988 689999999999999 999999998 6999999999999999984 48999999876 556677888
Q ss_pred cCCCcccccCChhhHHHHHhhcCCCC------cceEEEECCCCeEEec
Q 018808 92 KMPWLAVPFSDSETRDKLDELFKVMG------IPHLVILDENGKVLSD 133 (350)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v~~------~P~~~lid~~G~v~~~ 133 (350)
.++...++.........+++.|++.. .|+++|||++|+|++.
T Consensus 78 ~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~ 125 (143)
T cd03014 78 AEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYV 125 (143)
T ss_pred hcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEE
Confidence 77754455332222258899999864 7899999999999885
No 69
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.74 E-value=1e-17 Score=139.33 Aligned_cols=115 Identities=21% Similarity=0.357 Sum_probs=93.1
Q ss_pred hhhcCccCCcee-ccCCc--eeecCCC-CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 13 SLLSSSARDFLI-RSNGD--QVKLDSL-KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 13 ~~~g~~~p~f~~-~~~g~--~~~l~~~-~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
..+|.++|+|++ +.+|+ .++++++ +|| ++|+||++||++|+.++|.+.+++++ .+++++|+.++..++.+
T Consensus 34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~ 108 (173)
T TIGR00385 34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNAL 108 (173)
T ss_pred hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHH
Confidence 467999999988 56776 5665675 789 99999999999999999999887652 38899999888888888
Q ss_pred hHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 88 GYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
++++.+++. ++....|....+.+.|++.++|+++++|++|+++++
T Consensus 109 ~~~~~~~~~-f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~ 153 (173)
T TIGR00385 109 KFLKELGNP-YQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYR 153 (173)
T ss_pred HHHHHcCCC-CceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEE
Confidence 898887653 332222344588999999999999999999999985
No 70
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.74 E-value=1.7e-17 Score=135.92 Aligned_cols=101 Identities=19% Similarity=0.313 Sum_probs=82.4
Q ss_pred ccCCceecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCC
Q 018808 177 HSRDFVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPW 256 (350)
Q Consensus 177 ~~p~f~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~ 256 (350)
..++| ...+|+.+++++++ +|+||++|||+|++++|.|+++++++ + ++|++|++|++.+
T Consensus 54 ~~~~f-~l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g--~~Vi~Vs~D~~~~----------- 112 (181)
T PRK13728 54 APRWF-RLSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---G--FSVFPYTLDGQGD----------- 112 (181)
T ss_pred CCCcc-CCCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---C--CEEEEEEeCCCCC-----------
Confidence 34555 23599999999998 77899999999999999999999998 3 8999999985532
Q ss_pred ccccCCch-hHHHHHHHcCC--CCccEEEEECCCCCEEe-ccchhh
Q 018808 257 LALPFKDK-SREKLARYFEL--STLPTLVIIGPDGKTLH-SNVAEA 298 (350)
Q Consensus 257 ~~~~~~~~-~~~~~~~~~~v--~~~P~~~lid~~G~i~~-~~~~~~ 298 (350)
..||+..+ ....+.+.|++ .++|++||||++|+++. .+.|.+
T Consensus 113 ~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~~~~G~~ 158 (181)
T PRK13728 113 TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALPLLQGAT 158 (181)
T ss_pred CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEEEEECCC
Confidence 57887774 55678889995 69999999999999974 677743
No 71
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.73 E-value=8.5e-17 Score=130.66 Aligned_cols=117 Identities=20% Similarity=0.307 Sum_probs=95.9
Q ss_pred hcCccCCcee-ccCCceeecCCCCC-c-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKG-K-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~g-k-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
+|+.+|+|.+ +.+|+.+++++++| | ++|.|| ++||+.|...+|.|+++++++++++ +.+++|+.|. .+..++|.
T Consensus 3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-v~vi~vs~d~-~~~~~~~~ 80 (149)
T cd03018 3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG-AEVLGISVDS-PFSLRAWA 80 (149)
T ss_pred CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC-CEEEEecCCC-HHHHHHHH
Confidence 5999999988 67999999999999 8 888887 8999999999999999999998764 9999999774 56688888
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCCC------cceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVMG------IPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~------~P~~~lid~~G~v~~~ 133 (350)
+.++....-+.|.+....+.+.|++.. .|+++|+|++|++++.
T Consensus 81 ~~~~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~ 129 (149)
T cd03018 81 EENGLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYA 129 (149)
T ss_pred HhcCCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEE
Confidence 877643333444332268899999873 3489999999999985
No 72
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.71 E-value=1.1e-16 Score=130.84 Aligned_cols=116 Identities=22% Similarity=0.345 Sum_probs=96.3
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEecC-CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~-~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
.+|+.+|+|++ +.+|+.+++++++|| ++|+||++ ||+.|....+.|.++++++++++ +++++|+.|+ .+.++++.
T Consensus 5 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~-v~vi~Is~d~-~~~~~~~~ 82 (154)
T PRK09437 5 KAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG-VVVLGISTDK-PEKLSRFA 82 (154)
T ss_pred CCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC-CEEEEEcCCC-HHHHHHHH
Confidence 46999999988 689999999999999 99999986 68899999999999999998875 9999999874 57888888
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCCCc------------ceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVMGI------------PHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~------------P~~~lid~~G~v~~~ 133 (350)
+.++. .+++.. |....+.+.|++... |+++|||++|+|++.
T Consensus 83 ~~~~~-~~~~l~-D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 83 EKELL-NFTLLS-DEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred HHhCC-CCeEEE-CCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 87754 333322 333578899998654 678999999999885
No 73
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.71 E-value=8.5e-17 Score=129.21 Aligned_cols=113 Identities=28% Similarity=0.409 Sum_probs=95.8
Q ss_pred CccCCcee-ccCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcC
Q 018808 17 SSARDFLI-RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93 (350)
Q Consensus 17 ~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~ 93 (350)
+++|+|.+ +.+|+.+++++++|| ++|+|| ++|||.|..+++.|.++++++.+++ +++++|+.|. .+.+++|.+.+
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~-~~vv~is~d~-~~~~~~~~~~~ 78 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG-AVVIGVSPDS-VESHAKFAEKY 78 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC-CEEEEEcCCC-HHHHHHHHHHh
Confidence 46899988 689999999999999 999999 5899999999999999999998764 9999999874 57788888877
Q ss_pred CCcccccCChhhHHHHHhhcCCCCc---------ceEEEECCCCeEEec
Q 018808 94 PWLAVPFSDSETRDKLDELFKVMGI---------PHLVILDENGKVLSD 133 (350)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~v~~~---------P~~~lid~~G~v~~~ 133 (350)
+.....+.|. ...+.+.|++... |+++++|++|++++.
T Consensus 79 ~~~~~~l~D~--~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~ 125 (140)
T cd03017 79 GLPFPLLSDP--DGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV 125 (140)
T ss_pred CCCceEEECC--ccHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence 6533333333 3589999999988 999999999999985
No 74
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.70 E-value=3.7e-16 Score=130.04 Aligned_cols=117 Identities=20% Similarity=0.305 Sum_probs=91.4
Q ss_pred hcCccCCcee-ccCC----ceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 15 LSSSARDFLI-RSNG----DQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g----~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
+|+.+|+|++ +.+| +.+++++++|| ++|+|| ++||+.|...++.|.+++++|.+++ +.+++|++|... ...
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~-v~vv~Is~d~~~-~~~ 78 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN-AEVLGVSTDSHF-SHL 78 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC-CEEEEEecCCHH-HHH
Confidence 5899999988 4565 79999999999 999999 7999999999999999999998774 999999987542 223
Q ss_pred hHHhcC------CCcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEecC
Q 018808 88 GYFSKM------PWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSDG 134 (350)
Q Consensus 88 ~~~~~~------~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~ 134 (350)
++.+.. ....+++. .|....+++.|++. ..|+++|||++|++++..
T Consensus 79 ~~~~~~~~~~~~~~~~f~~l-~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 79 AWRNTPRKEGGLGKINFPLL-ADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred HHHHhhhhhCCccCcceeEE-ECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 333321 11233332 23345899999986 678999999999999863
No 75
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.69 E-value=7.4e-17 Score=135.26 Aligned_cols=121 Identities=25% Similarity=0.381 Sum_probs=90.1
Q ss_pred CchhhhcCccCCcee-ccCCceeecCCCCCc-E-EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-----
Q 018808 10 DIQSLLSSSARDFLI-RSNGDQVKLDSLKGK-I-GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE----- 81 (350)
Q Consensus 10 ~~~~~~g~~~p~f~~-~~~g~~~~l~~~~gk-~-~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~----- 81 (350)
.++.. +.++|+|++ +.+|+.+++++++|| + ++.||++|||+|+.++|.|.+++++|++++ +.+++|+++.
T Consensus 12 ~~~~~-~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g-v~vv~vs~~~~~~~~ 89 (183)
T PTZ00256 12 QIQPP-TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG-LEILAFPCNQFMEQE 89 (183)
T ss_pred cccCC-CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC-cEEEEEecccccccC
Confidence 34444 678999988 689999999999999 5 456699999999999999999999998875 9999999752
Q ss_pred --CHHHHHhHHh-cCCCcccccC-C--hh--hHHHHH------------hhcCCCCcce---EEEECCCCeEEec
Q 018808 82 --DDEAFKGYFS-KMPWLAVPFS-D--SE--TRDKLD------------ELFKVMGIPH---LVILDENGKVLSD 133 (350)
Q Consensus 82 --~~~~~~~~~~-~~~~~~~~~~-~--~~--~~~~l~------------~~~~v~~~P~---~~lid~~G~v~~~ 133 (350)
+.+.+++|++ .++. .+|+. + .+ ....+. ..+++..+|+ ++|||++|+++++
T Consensus 90 ~~~~~~~~~f~~~~~~~-~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~ 163 (183)
T PTZ00256 90 PWDEPEIKEYVQKKFNV-DFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKY 163 (183)
T ss_pred CCCHHHHHHHHHHhcCC-CCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEE
Confidence 3467888875 4443 34433 1 11 111222 1235778894 6999999999986
No 76
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.68 E-value=1.3e-16 Score=125.54 Aligned_cols=119 Identities=45% Similarity=0.888 Sum_probs=104.8
Q ss_pred ccCCceeecC-CCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhc--CCCcccc
Q 018808 25 RSNGDQVKLD-SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSK--MPWLAVP 99 (350)
Q Consensus 25 ~~~g~~~~l~-~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~--~~~~~~~ 99 (350)
..+|..+..+ .++|| +.++|.+.|||+|+.+.|.|.++|+.+.+++ .+++|.|+.|.+.+.+..+... ..|..+|
T Consensus 19 ~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iP 98 (157)
T KOG2501|consen 19 KQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIP 98 (157)
T ss_pred ccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEec
Confidence 4577776666 68999 9999999999999999999999999998764 6999999999999999999985 6799999
Q ss_pred cCChhhHHHHHhhcCCCCcceEEEECCCCeEEecCCccceecccC
Q 018808 100 FSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGGVEIIREYGV 144 (350)
Q Consensus 100 ~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~ 144 (350)
+.+... +++.++|++.++|.+++++++|.++..++...+...+.
T Consensus 99 f~d~~~-~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~ 142 (157)
T KOG2501|consen 99 FGDDLI-QKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS 142 (157)
T ss_pred CCCHHH-HHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence 986555 59999999999999999999999998887777766653
No 77
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.68 E-value=3.9e-16 Score=125.08 Aligned_cols=105 Identities=15% Similarity=0.219 Sum_probs=81.1
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
..||+++|+||++||++|+.+.|.+.++++++.+. +.++.|++|.+.. ..+.+.|+
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~---------------------~~~~~~~~ 73 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKW---------------------LPEIDRYR 73 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCccc---------------------HHHHHHcC
Confidence 46899999999999999999999999999998754 8899998874311 34678999
Q ss_pred CCCccEEEEECCCCCEEeccchhhhhhcCCccCCCCccchHHHHHHHHHHHhcccccceeccC
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSG 337 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 337 (350)
|.++|+++++|++|+++.+..|.. ..++|.+..+...+..++......|
T Consensus 74 V~~iPt~v~~~~~G~~v~~~~G~~--------------~~~~l~~~l~~l~~~~~~~~~~~~~ 122 (142)
T cd02950 74 VDGIPHFVFLDREGNEEGQSIGLQ--------------PKQVLAQNLDALVAGEPLPYANAVG 122 (142)
T ss_pred CCCCCEEEEECCCCCEEEEEeCCC--------------CHHHHHHHHHHHHcCCCCCcccccC
Confidence 999999999999999999988832 2344555555555555555544433
No 78
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.68 E-value=5.4e-16 Score=128.72 Aligned_cols=117 Identities=14% Similarity=0.175 Sum_probs=91.3
Q ss_pred ccCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-------CCHHHHH
Q 018808 177 HSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-------DEEESFK 248 (350)
Q Consensus 177 ~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-------~~~~~~~ 248 (350)
.+++| +.+.+|+.+++++++||++||+|||+||++|. .++.|++++++|+++| ++|++|+++ ++.++.+
T Consensus 4 ~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g--l~Vlg~p~nqf~~qe~~~~~ei~ 80 (183)
T PRK10606 4 SILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG--FVVLGFPCNQFLGQEPGSDEEIK 80 (183)
T ss_pred CccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC--eEEEEeeccccccCCCCCHHHHH
Confidence 45677 68899999999999999999999999999996 6999999999999988 999999996 3678888
Q ss_pred Hhhc-CCCCccccCCchhH------HHHHHH----cC--------------------------CCCccEEEEECCCCCEE
Q 018808 249 RDLG-SMPWLALPFKDKSR------EKLARY----FE--------------------------LSTLPTLVIIGPDGKTL 291 (350)
Q Consensus 249 ~~~~-~~~~~~~~~~~~~~------~~~~~~----~~--------------------------v~~~P~~~lid~~G~i~ 291 (350)
+|+. +++ ++||+..+.+ +.+.+. .. |..--+-||||++|+++
T Consensus 81 ~f~~~~~g-~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv 159 (183)
T PRK10606 81 TYCRTTWG-VTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVI 159 (183)
T ss_pred HHHHHccC-CCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEE
Confidence 9987 444 6777763221 122222 21 22223579999999999
Q ss_pred eccchh
Q 018808 292 HSNVAE 297 (350)
Q Consensus 292 ~~~~~~ 297 (350)
.++...
T Consensus 160 ~r~~~~ 165 (183)
T PRK10606 160 QRFSPD 165 (183)
T ss_pred EEECCC
Confidence 998763
No 79
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.67 E-value=2.2e-16 Score=132.86 Aligned_cols=117 Identities=25% Similarity=0.379 Sum_probs=91.7
Q ss_pred hhcCccCCceec--cCCc--eeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 14 LLSSSARDFLIR--SNGD--QVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 14 ~~g~~~p~f~~~--~~g~--~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
.+|+.+|+|++. .+|+ .+++++++|| ++|+|| ++||+.|..+++.|.+++++|.+++ +++++|+.|.. +..+
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g-v~vi~VS~D~~-~~~~ 80 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG-VEVYSVSTDTH-FVHK 80 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC-CcEEEEeCCCH-HHHH
Confidence 679999999884 4676 6888999999 999999 9999999999999999999998775 89999998864 2333
Q ss_pred hHHhc---CCCcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 88 GYFSK---MPWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~---~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
+|... .....+++. .|....+++.|++. ..|+++|||++|+|++.
T Consensus 81 ~~~~~~~~~~~l~fpll-sD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~ 134 (187)
T TIGR03137 81 AWHDTSEAIGKITYPML-GDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAV 134 (187)
T ss_pred HHHhhhhhccCcceeEE-ECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEE
Confidence 33322 112334432 23346899999986 46999999999999885
No 80
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.67 E-value=6.5e-16 Score=119.06 Aligned_cols=110 Identities=31% Similarity=0.556 Sum_probs=94.7
Q ss_pred Ccee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC-HHHHHhHHhcCCCcc
Q 018808 21 DFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED-DEAFKGYFSKMPWLA 97 (350)
Q Consensus 21 ~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~-~~~~~~~~~~~~~~~ 97 (350)
+|.+ +.+|+.+++++++|| ++|+||++||+.|+...+.|.++.+++++. ++.++.|+++.. .+.++++++.+++..
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~~v~~d~~~~~~~~~~~~~~~~~~ 79 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDD-GVEVVGVNVDDDDPAAVKAFLKKYGITF 79 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCC-CeEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence 4656 579999999999999 999999999999999999999999999755 599999999987 899999999887433
Q ss_pred cccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 98 VPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 98 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
..+.+. ...+.+.|++.++|+++++|++|+++++
T Consensus 80 ~~~~~~--~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 80 PVLLDP--DGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred ceEEcC--cchHHHhcCcCccceEEEECCCCcEEEE
Confidence 333333 4589999999999999999999999874
No 81
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.67 E-value=4.7e-16 Score=125.18 Aligned_cols=116 Identities=28% Similarity=0.443 Sum_probs=93.8
Q ss_pred ccCCcee-ccCCceeecCCCCCc-EEEEEecCCChh-hhhhhHHHHHHHHHhccCC--CEEEEEEECCC---CHHHHHhH
Q 018808 18 SARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGP-CQRFTPILAEVYNELSRQG--DFEVIFVSGDE---DDEAFKGY 89 (350)
Q Consensus 18 ~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~-C~~~~~~l~~l~~~~~~~~--~~~~v~i~~d~---~~~~~~~~ 89 (350)
.+|+|++ +.+|+.+++.+++|| ++|.||++||+. |...++.|.++++++++++ ++.+++|+.|. +.+.++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~ 80 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAY 80 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHH
Confidence 4799988 689999999999999 999999999997 9999999999999998753 59999999874 45778888
Q ss_pred HhcCCC-cccccCChhhHHHHHhhcCCCCc--------------ceEEEECCCCeEEec
Q 018808 90 FSKMPW-LAVPFSDSETRDKLDELFKVMGI--------------PHLVILDENGKVLSD 133 (350)
Q Consensus 90 ~~~~~~-~~~~~~~~~~~~~l~~~~~v~~~--------------P~~~lid~~G~v~~~ 133 (350)
.+.++. +.+.....+....+++.||+... |.++|||++|++++.
T Consensus 81 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 139 (142)
T cd02968 81 AKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY 139 (142)
T ss_pred HHHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence 888752 11222223345689999997543 569999999999875
No 82
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.66 E-value=3e-16 Score=127.94 Aligned_cols=112 Identities=19% Similarity=0.268 Sum_probs=84.7
Q ss_pred CCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCHHHHHhHH
Q 018808 20 RDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKGYF 90 (350)
Q Consensus 20 p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~~~~~~~~ 90 (350)
-+|++ +.+|+++++++++|| ++|+||++|||+|...+|.|.+++++|++++ +.+++|+++ ++.+..++|+
T Consensus 3 ~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~-~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 3 YSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH-FNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred ccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC-eEEEEEeccccccCCCCCHHHHHHHH
Confidence 46877 689999999999999 9999999999999999999999999999875 999999862 4467788888
Q ss_pred hc-CCCcccccC-Ch---hhHHHHHhhcC---CCCcce----EEEECCCCeEEec
Q 018808 91 SK-MPWLAVPFS-DS---ETRDKLDELFK---VMGIPH----LVILDENGKVLSD 133 (350)
Q Consensus 91 ~~-~~~~~~~~~-~~---~~~~~l~~~~~---v~~~P~----~~lid~~G~v~~~ 133 (350)
+. ++. .+|.. +. +........|. ....|+ ++|||++|+++.+
T Consensus 82 ~~~~~~-~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~ 135 (153)
T TIGR02540 82 RRNYGV-TFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKF 135 (153)
T ss_pred HHhcCC-CCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEE
Confidence 75 453 34432 10 01011111222 235787 9999999999985
No 83
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.65 E-value=9.8e-16 Score=122.98 Aligned_cols=114 Identities=24% Similarity=0.359 Sum_probs=93.6
Q ss_pred ccCCcee-ccCCceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCC
Q 018808 18 SARDFLI-RSNGDQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMP 94 (350)
Q Consensus 18 ~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~ 94 (350)
.+|+|++ +.+|+.+++++++|| ++|+|| +.||+.|...++.|.++++++++. .+.+++|+.| +.+..+++.+.++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~-~~~~i~is~d-~~~~~~~~~~~~~ 78 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG-GAEVLGVSVD-SPFSHKAWAEKEG 78 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCC-CHHHHHHHHhccc
Confidence 3799988 689999999999999 999999 689999999999999999999766 4999999986 4567788888773
Q ss_pred CcccccCChhhHHHHHhhcCCCCcc---------eEEEECCCCeEEecC
Q 018808 95 WLAVPFSDSETRDKLDELFKVMGIP---------HLVILDENGKVLSDG 134 (350)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~~v~~~P---------~~~lid~~G~v~~~~ 134 (350)
...+++.. |....+.+.|++...| +++|+|++|++++..
T Consensus 79 ~~~~~~l~-D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~ 126 (140)
T cd02971 79 GLNFPLLS-DPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE 126 (140)
T ss_pred CCCceEEE-CCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence 33444332 3335899999988665 899999999999864
No 84
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.64 E-value=2e-15 Score=114.43 Aligned_cols=78 Identities=18% Similarity=0.366 Sum_probs=66.8
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
.+||+|||+||++||++|+.+.|.|+++++++ . . +.++.|+.|.+.. ..+++++|+
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~-~--v~~~~vd~d~~~~--------------------~~~l~~~~~ 68 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N-D--VVFLLVNGDENDS--------------------TMELCRREK 68 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C-C--CEEEEEECCCChH--------------------HHHHHHHcC
Confidence 45899999999999999999999999999998 2 2 8899998875421 146889999
Q ss_pred CCCccEEEEECCCCCEEeccchh
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
|.++||++++ ++|+++.+..|.
T Consensus 69 V~~~Pt~~~~-~~G~~v~~~~G~ 90 (103)
T cd02985 69 IIEVPHFLFY-KDGEKIHEEEGI 90 (103)
T ss_pred CCcCCEEEEE-eCCeEEEEEeCC
Confidence 9999998888 999999998884
No 85
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.64 E-value=8.2e-16 Score=123.98 Aligned_cols=91 Identities=15% Similarity=0.253 Sum_probs=65.6
Q ss_pred CceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhH
Q 018808 187 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSR 266 (350)
Q Consensus 187 g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (350)
|+.+++++ +.+|+||++||++|++++|.|++++++++ +.|++|++|+... ..+|...+..
T Consensus 44 G~~~~l~~----~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d~~~~-----------~~fp~~~~~~ 103 (153)
T TIGR02738 44 GRHANQDD----YALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLDGQGL-----------TGFPDPLPAT 103 (153)
T ss_pred chhhhcCC----CEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeCCCcc-----------cccccccCCc
Confidence 55555544 45999999999999999999999998872 7899999985431 1233322222
Q ss_pred HHH-HHHc---CCCCccEEEEECCCCCEEe-ccchh
Q 018808 267 EKL-ARYF---ELSTLPTLVIIGPDGKTLH-SNVAE 297 (350)
Q Consensus 267 ~~~-~~~~---~v~~~P~~~lid~~G~i~~-~~~~~ 297 (350)
.+. .+.| ++.++|++++||++|+++. +..|.
T Consensus 104 ~~~~~~~~~~~~v~~iPTt~LID~~G~~i~~~~~G~ 139 (153)
T TIGR02738 104 PEVMQTFFPNPRPVVTPATFLVNVNTRKAYPVLQGA 139 (153)
T ss_pred hHHHHHHhccCCCCCCCeEEEEeCCCCEEEEEeecc
Confidence 223 3455 8899999999999988654 56663
No 86
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.63 E-value=1.4e-15 Score=115.32 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=68.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.++++||+|||+||+||+.+.|.|.++.+++.+. +.++.|++|.. .++++.|+|
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~-----------------------~~la~~~~V 66 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEV-----------------------PDFNKMYEL 66 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCC-----------------------HHHHHHcCC
Confidence 3679999999999999999999999999999765 78999998865 558999999
Q ss_pred CCccEEEEECCCCCEEeccchhh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~~ 298 (350)
.++||++++ ++|+.+.+..|..
T Consensus 67 ~~iPTf~~f-k~G~~v~~~~G~~ 88 (114)
T cd02954 67 YDPPTVMFF-FRNKHMKIDLGTG 88 (114)
T ss_pred CCCCEEEEE-ECCEEEEEEcCCC
Confidence 999999999 8999999988744
No 87
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.63 E-value=1.9e-15 Score=118.49 Aligned_cols=105 Identities=27% Similarity=0.519 Sum_probs=86.5
Q ss_pred CCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC-CHHHHHhHHhcCCCc
Q 018808 20 RDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE-DDEAFKGYFSKMPWL 96 (350)
Q Consensus 20 p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~-~~~~~~~~~~~~~~~ 96 (350)
|+|++ +.+|+.+++++++|+ ++|+||++||++|+.+.|.|.+++++ +.+++|+.+. +.+.++++.+.++.
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~------~~~i~i~~~~~~~~~~~~~~~~~~~- 73 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD------YPVVSVALRSGDDGAVARFMQKKGY- 73 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh------CCEEEEEccCCCHHHHHHHHHHcCC-
Confidence 78977 689999999999999 99999999999999999999999876 3467777765 47888888888764
Q ss_pred ccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 97 AVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 97 ~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+++. .+.+..+++.|++.++|+++++|++| +++.
T Consensus 74 ~~~~~-~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~ 108 (123)
T cd03011 74 GFPVI-NDPDGVISARWGVSVTPAIVIVDPGG-IVFV 108 (123)
T ss_pred CccEE-ECCCcHHHHhCCCCcccEEEEEcCCC-eEEE
Confidence 34432 13335799999999999999999999 6653
No 88
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.63 E-value=1.5e-15 Score=129.11 Aligned_cols=117 Identities=21% Similarity=0.322 Sum_probs=92.0
Q ss_pred hhcCccCCceec-cCCceeecCCCCCc-EEE-EEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHH--HHH-
Q 018808 14 LLSSSARDFLIR-SNGDQVKLDSLKGK-IGL-YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE--AFK- 87 (350)
Q Consensus 14 ~~g~~~p~f~~~-~~g~~~~l~~~~gk-~~v-~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~--~~~- 87 (350)
.+|+.+|+|++. .+| .+++++++|| ++| +||++||+.|..+++.|.+++++|++++ +++++|++|+... .|.
T Consensus 3 ~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~-~~vi~vS~D~~~~~~~w~~ 80 (202)
T PRK13190 3 KLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG-VELVGLSVDSIYSHIAWLR 80 (202)
T ss_pred CCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHH
Confidence 369999999885 455 7999999999 655 6899999999999999999999999875 9999999986533 333
Q ss_pred hHHhcCCC-cccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 88 GYFSKMPW-LAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~~~-~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
++.+..+. ..+|+. .|....+++.||+. .+|.++|||++|+|++.
T Consensus 81 ~~~~~~g~~~~fPll-~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~ 132 (202)
T PRK13190 81 DIEERFGIKIPFPVI-ADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWM 132 (202)
T ss_pred hHHHhcCCCceEEEE-ECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEE
Confidence 33334442 345543 23446899999984 58999999999999874
No 89
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.63 E-value=1.8e-15 Score=129.40 Aligned_cols=118 Identities=15% Similarity=0.212 Sum_probs=95.4
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc--EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC--HHHHHh
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--DEAFKG 88 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk--~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~--~~~~~~ 88 (350)
.+|+.+|+|++ +.+|+...+++++|| +++.||++|||.|..+++.|.+++++|.+++ +++++|++|+. ...|.+
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g-v~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN-TELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC-CEEEEEeCCCHHHHHHHHH
Confidence 57999999988 578888888999999 4678999999999999999999999999885 99999999875 335666
Q ss_pred HHhcC-C-CcccccCChhhHHHHHhhcCCC-------CcceEEEECCCCeEEec
Q 018808 89 YFSKM-P-WLAVPFSDSETRDKLDELFKVM-------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 89 ~~~~~-~-~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~ 133 (350)
+++.. + ...||.. .|....+++.||+. ..|+++|||++|+|++.
T Consensus 82 ~i~~~~~~~i~fPil-~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 82 WIKDNTNIAIPFPVI-ADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred hHHHhcCCCCceeEE-ECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 66543 1 2345543 33445899999973 68999999999999875
No 90
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=5.1e-15 Score=117.85 Aligned_cols=116 Identities=23% Similarity=0.361 Sum_probs=98.8
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc-EEEEEec-CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
-+|++||+|++ +.+|+.++|++++|| +||+||- .++|.|..+.-.|.+.+.+|.+.+ .++++|+.|+ .+.-++|+
T Consensus 5 ~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~-a~V~GIS~Ds-~~~~~~F~ 82 (157)
T COG1225 5 KVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG-AVVLGISPDS-PKSHKKFA 82 (157)
T ss_pred CCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC-CEEEEEeCCC-HHHHHHHH
Confidence 46999999988 679999999999999 9999987 689999999999999999999885 9999999874 46778898
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCC------------CcceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVM------------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~ 133 (350)
++++......+|.+ ..+++.||+. ..+.++|||++|+|++.
T Consensus 83 ~k~~L~f~LLSD~~--~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~ 135 (157)
T COG1225 83 EKHGLTFPLLSDED--GEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYV 135 (157)
T ss_pred HHhCCCceeeECCc--HHHHHHhCcccccccCccccccccceEEEECCCCeEEEE
Confidence 88886644454444 4799999983 35689999999999874
No 91
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.62 E-value=2.3e-15 Score=156.11 Aligned_cols=116 Identities=23% Similarity=0.302 Sum_probs=97.4
Q ss_pred hcCccCCceec---cCCceeec-CCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEEC---C--CCHH
Q 018808 15 LSSSARDFLIR---SNGDQVKL-DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG---D--EDDE 84 (350)
Q Consensus 15 ~g~~~p~f~~~---~~g~~~~l-~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~---d--~~~~ 84 (350)
.|+++|+|... .+|+++++ ++++|| ++|+||++||++|+.++|.|++++++|++++ +.+++|++ | .+.+
T Consensus 393 ~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~-~~vvgV~~~~~D~~~~~~ 471 (1057)
T PLN02919 393 TATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP-FTVVGVHSAKFDNEKDLE 471 (1057)
T ss_pred cCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC-eEEEEEecccccccccHH
Confidence 58999999763 58999998 689999 9999999999999999999999999998774 99999974 3 2467
Q ss_pred HHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 85 AFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+++++..+++.....+.|. ...+.+.|++.++|+++|+|++|+++.+
T Consensus 472 ~~~~~~~~~~i~~pvv~D~--~~~~~~~~~V~~iPt~ilid~~G~iv~~ 518 (1057)
T PLN02919 472 AIRNAVLRYNISHPVVNDG--DMYLWRELGVSSWPTFAVVSPNGKLIAQ 518 (1057)
T ss_pred HHHHHHHHhCCCccEEECC--chHHHHhcCCCccceEEEECCCCeEEEE
Confidence 7888888877544334333 3478999999999999999999999875
No 92
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.61 E-value=4.6e-15 Score=120.30 Aligned_cols=112 Identities=20% Similarity=0.390 Sum_probs=88.4
Q ss_pred ccCCcee-ccCCceeecCCCC-Cc-E-EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcC
Q 018808 18 SARDFLI-RSNGDQVKLDSLK-GK-I-GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKM 93 (350)
Q Consensus 18 ~~p~f~~-~~~g~~~~l~~~~-gk-~-~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~ 93 (350)
.+|+|++ +.+|+.++++++. ++ + +++||++|||.|+.+++.|.++++++.+++ +.+++|+.++. +...++.+..
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~-v~vv~V~~~~~-~~~~~~~~~~ 78 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG-VELVAVGPESP-EKLEAFDKGK 78 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC-eEEEEEeCCCH-HHHHHHHHhc
Confidence 4799988 6899999999975 45 4 555579999999999999999999998774 99999998765 3445666666
Q ss_pred CCcccccCChhhHHHHHhhcCCC-----------------------------CcceEEEECCCCeEEec
Q 018808 94 PWLAVPFSDSETRDKLDELFKVM-----------------------------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~~v~-----------------------------~~P~~~lid~~G~v~~~ 133 (350)
+....-+.| ....+.+.|++. ..|..+|+|++|+|++.
T Consensus 79 ~~~~p~~~D--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~ 145 (149)
T cd02970 79 FLPFPVYAD--PDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFA 145 (149)
T ss_pred CCCCeEEEC--CchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEE
Confidence 543322444 345899999984 79999999999999875
No 93
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.61 E-value=2.9e-15 Score=122.75 Aligned_cols=98 Identities=23% Similarity=0.395 Sum_probs=78.5
Q ss_pred cCccCCceeccCCceeecCCCCCcEEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCC
Q 018808 16 SSSARDFLIRSNGDQVKLDSLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPW 95 (350)
Q Consensus 16 g~~~p~f~~~~~g~~~~l~~~~gk~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~ 95 (350)
..+.|+|.+. +|+++++++++ +|+||++|||+|+.++|.|+++++++ .+++++|++|...+
T Consensus 52 ~~~~~~f~l~-dG~~v~lsd~~---lV~FwaswCp~C~~e~P~L~~l~~~~----g~~Vi~Vs~D~~~~----------- 112 (181)
T PRK13728 52 KPAPRWFRLS-NGRQVNLADWK---VVLFMQGHCPYCHQFDPVLKQLAQQY----GFSVFPYTLDGQGD----------- 112 (181)
T ss_pred CCCCCccCCC-CCCEeehhHce---EEEEECCCCHhHHHHHHHHHHHHHHc----CCEEEEEEeCCCCC-----------
Confidence 3456688664 99999999997 77899999999999999999999998 38899999886532
Q ss_pred cccccCChhhHHHHHhhcCC--CCcceEEEECCCCeEEe
Q 018808 96 LAVPFSDSETRDKLDELFKV--MGIPHLVILDENGKVLS 132 (350)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~v--~~~P~~~lid~~G~v~~ 132 (350)
..||....+....+.+.|++ .++|+++|+|++|++++
T Consensus 113 ~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 113 TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 34554432233467788995 69999999999999864
No 94
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.61 E-value=3.9e-15 Score=121.22 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=99.9
Q ss_pred cccccCCc-eecCC---Cceeeccc-cCCC-EEEEEEeccCCccChhh-HHHHHHHHHHHhcCCCcE-EEEEEeCCCCHH
Q 018808 174 LTSHSRDF-VISSD---GRKISVSD-LEGK-TIGLYFSMSSYKASAEF-TPRLVEVYEKLKGKGESF-EIVLISLDDEEE 245 (350)
Q Consensus 174 ~~~~~p~f-~~~~~---g~~v~l~~-~~gk-~vlv~f~~~~C~~C~~~-~~~l~~~~~~~~~~~~~~-~vv~v~~d~~~~ 245 (350)
+|..+|+| +.+.+ |+.+++++ ++|| +||++|++.|||.|..+ ++.+++.++++.+.| + +|++||.| +..
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D-~~~ 77 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVN-DPF 77 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECC-CHH
Confidence 47789999 66664 89999999 5886 55555568899999999 999999999999888 8 69999999 566
Q ss_pred HHHHhhcCCCC-ccccCCchhHHHHHHHcCCC-----------CccEEEEECCCCCEEeccchh
Q 018808 246 SFKRDLGSMPW-LALPFKDKSREKLARYFELS-----------TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 246 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~-----------~~P~~~lid~~G~i~~~~~~~ 297 (350)
..++|.++... .+||+++|.+.++++.||+. ....+|||| +|+|++.+...
T Consensus 78 ~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~ 140 (155)
T cd03013 78 VMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEE 140 (155)
T ss_pred HHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEec
Confidence 67888887764 48999999999999999983 146789999 79999988764
No 95
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.60 E-value=6.4e-15 Score=123.09 Aligned_cols=117 Identities=22% Similarity=0.338 Sum_probs=92.0
Q ss_pred hhcCccCCceec--cCC--ceeecCCCCCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 14 LLSSSARDFLIR--SNG--DQVKLDSLKGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 14 ~~g~~~p~f~~~--~~g--~~~~l~~~~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
.+|.++|+|... .+| ..++|++++|| ++|+|| ++||+.|..+++.|.+++++|.+++ +++++|+.|+. ...+
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g-~~vigIS~D~~-~~~~ 80 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG-VDVYSVSTDTH-FTHK 80 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC-CEEEEEeCCCH-HHHH
Confidence 469999999774 234 46788899999 999999 9999999999999999999998875 99999998754 3444
Q ss_pred hHHhcC---CCcccccCChhhHHHHHhhcCCC----Cc--ceEEEECCCCeEEec
Q 018808 88 GYFSKM---PWLAVPFSDSETRDKLDELFKVM----GI--PHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~----~~--P~~~lid~~G~v~~~ 133 (350)
+|.+.. ....+|.. .|....+++.||+. +. |.++|||++|+|++.
T Consensus 81 a~~~~~~~~~~l~fpll-sD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~ 134 (187)
T PRK10382 81 AWHSSSETIAKIKYAMI-GDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAI 134 (187)
T ss_pred HHHHhhccccCCceeEE-EcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEE
Confidence 454432 22344544 34567999999983 45 999999999999885
No 96
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.59 E-value=9.7e-15 Score=120.47 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=84.6
Q ss_pred hhcCccCCceecc-----------CCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEE------E
Q 018808 14 LLSSSARDFLIRS-----------NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEV------I 75 (350)
Q Consensus 14 ~~g~~~p~f~~~~-----------~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~------v 75 (350)
.+|++.|...+.. +.++++.++++|| .+|+|||+||+.|+.+.|.+.++.+ + .+.+ +
T Consensus 24 ~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~----~-~~~~~~y~~t~ 98 (184)
T TIGR01626 24 QVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA----A-KFPPVKYQTTT 98 (184)
T ss_pred hcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH----c-CCCcccccceE
Confidence 5688888876643 3347888899999 9999999999999999999999843 3 3677 8
Q ss_pred EEECCCCHHHHHhHHh----c----CCCcccccCChhhHHHHHhhcCCCCcceE-EEECCCCeEEec
Q 018808 76 FVSGDEDDEAFKGYFS----K----MPWLAVPFSDSETRDKLDELFKVMGIPHL-VILDENGKVLSD 133 (350)
Q Consensus 76 ~i~~d~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~l~~~~~v~~~P~~-~lid~~G~v~~~ 133 (350)
.|+.|+.......|.+ + +||..+ +.| ....+...|++.+.|++ +++|++|++++.
T Consensus 99 ~IN~dd~~~~~~~fVk~fie~~~~~~P~~~v-llD--~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~ 162 (184)
T TIGR01626 99 IINADDAIVGTGMFVKSSAKKGKKENPWSQV-VLD--DKGAVKNAWQLNSEDSAIIVLDKTGKVKFV 162 (184)
T ss_pred EEECccchhhHHHHHHHHHHHhcccCCcceE-EEC--CcchHHHhcCCCCCCceEEEECCCCcEEEE
Confidence 8998876555444433 3 333211 222 34578889999999988 899999999985
No 97
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.8e-14 Score=117.17 Aligned_cols=123 Identities=24% Similarity=0.383 Sum_probs=104.0
Q ss_pred hhcccccCCc-eecC-CCc---eeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC--C
Q 018808 172 SVLTSHSRDF-VISS-DGR---KISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD--E 243 (350)
Q Consensus 172 ~~~~~~~p~f-~~~~-~g~---~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~--~ 243 (350)
.++|..+|+| .... .|. .++++++.||+++++|| +...+.|..++..+.+.|++|+++| +++++||+|+ +
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVigvS~Ds~fs 80 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIGVSTDSVFS 80 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEEEecCcHHH
Confidence 4688999999 4444 553 99999998899999998 5578899999999999999999999 9999999995 5
Q ss_pred HHHHHHhhcCCC---CccccCCchhHHHHHHHcCCC------CccEEEEECCCCCEEeccch
Q 018808 244 EESFKRDLGSMP---WLALPFKDKSREKLARYFELS------TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 244 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~ 296 (350)
..+|.+...+.. .++||+..|..+++++.||+. ++-.+|||||+|+|++....
T Consensus 81 H~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~ 142 (194)
T COG0450 81 HKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVN 142 (194)
T ss_pred HHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEe
Confidence 666777755443 389999999999999999984 46689999999999987654
No 98
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.2e-13 Score=129.44 Aligned_cols=180 Identities=21% Similarity=0.338 Sum_probs=120.2
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
.+|.||++||++|..+.|.+.++.+.++. .+.+..|.++... .++..|++.++|
T Consensus 50 ~~v~fyapwc~~c~~l~~~~~~~~~~l~~--~~~~~~vd~~~~~------------------------~~~~~y~i~gfP 103 (383)
T KOG0191|consen 50 WLVEFYAPWCGHCKKLAPTYKKLAKALKG--KVKIGAVDCDEHK------------------------DLCEKYGIQGFP 103 (383)
T ss_pred eEEEEECCCCcchhhhchHHHHHHHHhcC--ceEEEEeCchhhH------------------------HHHHhcCCccCc
Confidence 99999999999999999999999999876 3666666665443 799999999999
Q ss_pred eEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCc-eecCCCceeeccccCCC
Q 018808 120 HLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDF-VISSDGRKISVSDLEGK 198 (350)
Q Consensus 120 ~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f-~~~~~g~~v~l~~~~gk 198 (350)
++.++.+...++... + +...+.+.++....... ........ ..+ +...+-... -.....
T Consensus 104 tl~~f~~~~~~~~~~--------~----~~~~~~~~~~~~~~~~~----~~~~~~~~--~v~~l~~~~~~~~--~~~~~~ 163 (383)
T KOG0191|consen 104 TLKVFRPGKKPIDYS--------G----PRNAESLAEFLIKELEP----SVKKLVEG--EVFELTKDNFDET--VKDSDA 163 (383)
T ss_pred EEEEEcCCCceeecc--------C----cccHHHHHHHHHHhhcc----ccccccCC--ceEEccccchhhh--hhccCc
Confidence 999996553444321 1 22334444443322111 11111100 011 111110000 001235
Q ss_pred EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCc
Q 018808 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTL 278 (350)
Q Consensus 199 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 278 (350)
.+++.|+++||++|+.+.|.+.++...+.. +..+.+..+.++. ...+...+++..+
T Consensus 164 ~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~~~-----------------------~~~~~~~~~v~~~ 219 (383)
T KOG0191|consen 164 DWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDATV-----------------------HKSLASRLEVRGY 219 (383)
T ss_pred ceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeeccch-----------------------HHHHhhhhcccCC
Confidence 789999999999999999999999998875 2348888776651 2557889999999
Q ss_pred cEEEEECCCCC
Q 018808 279 PTLVIIGPDGK 289 (350)
Q Consensus 279 P~~~lid~~G~ 289 (350)
|++.++-++..
T Consensus 220 Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 220 PTLKLFPPGEE 230 (383)
T ss_pred ceEEEecCCCc
Confidence 99999944444
No 99
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=8.4e-15 Score=114.32 Aligned_cols=75 Identities=21% Similarity=0.391 Sum_probs=68.3
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++|+|+|||+||+||+.+.|.|+++..++.++ +++..|++|.. .+++.+|+|.
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~-----------------------~ela~~Y~I~ 114 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEH-----------------------PELAEDYEIS 114 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccc-----------------------cchHhhccee
Confidence 479999999999999999999999999999776 99999998854 5589999999
Q ss_pred CccEEEEECCCCCEEeccchhh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~~ 298 (350)
++|+++++ ++|+.+.+..|..
T Consensus 115 avPtvlvf-knGe~~d~~vG~~ 135 (150)
T KOG0910|consen 115 AVPTVLVF-KNGEKVDRFVGAV 135 (150)
T ss_pred eeeEEEEE-ECCEEeeeecccC
Confidence 99999999 9999998888854
No 100
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=5.1e-14 Score=131.23 Aligned_cols=88 Identities=26% Similarity=0.483 Sum_probs=67.6
Q ss_pred ccCCceeccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCC
Q 018808 18 SARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPW 95 (350)
Q Consensus 18 ~~p~f~~~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~ 95 (350)
.+++..+.++..++...-.... ++|.|||+||.||+.++|.+.+.+..+++.+ .+.++-|.+...
T Consensus 22 ~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~------------- 88 (493)
T KOG0190|consen 22 KAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE------------- 88 (493)
T ss_pred CcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-------------
Confidence 3455666666666655555555 9999999999999999999999999998874 455555544322
Q ss_pred cccccCChhhHHHHHhhcCCCCcceEEEECCCCeE
Q 018808 96 LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKV 130 (350)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v 130 (350)
..+|.+|+|+++||+.++ ++|+.
T Consensus 89 -----------~~~~~~y~v~gyPTlkiF-rnG~~ 111 (493)
T KOG0190|consen 89 -----------SDLASKYEVRGYPTLKIF-RNGRS 111 (493)
T ss_pred -----------hhhHhhhcCCCCCeEEEE-ecCCc
Confidence 378999999999999988 78874
No 101
>PRK15000 peroxidase; Provisional
Probab=99.57 E-value=1.2e-14 Score=123.09 Aligned_cols=118 Identities=20% Similarity=0.341 Sum_probs=89.8
Q ss_pred hhcCccCCceec-c--CCce---eecCCC-CCc-EEEEEecC-CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCH-
Q 018808 14 LLSSSARDFLIR-S--NGDQ---VKLDSL-KGK-IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD- 83 (350)
Q Consensus 14 ~~g~~~p~f~~~-~--~g~~---~~l~~~-~gk-~~v~F~~~-~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~- 83 (350)
.+|+.+|+|++. . +|+. ++++++ +|| ++|+||.. ||+.|..+++.|.+++++|++++ +++++|++|+..
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g-~~vigvS~D~~~~ 81 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG-VEVVGVSFDSEFV 81 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCCHHH
Confidence 469999999885 3 3454 455555 799 99999995 99999999999999999999885 999999998653
Q ss_pred -HHHHhH-HhcCCC--cccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 84 -EAFKGY-FSKMPW--LAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 84 -~~~~~~-~~~~~~--~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
..|.+. .+..+. ..+|.. .|....+++.|++. ..|.+++||++|+|++.
T Consensus 82 ~~~w~~~~~~~~g~~~i~fpll-sD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~ 140 (200)
T PRK15000 82 HNAWRNTPVDKGGIGPVKYAMV-ADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQ 140 (200)
T ss_pred HHHHHhhHHHhCCccccCceEE-ECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEE
Confidence 233332 222332 345543 33446899999997 79999999999999884
No 102
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.56 E-value=2.8e-14 Score=121.31 Aligned_cols=118 Identities=19% Similarity=0.266 Sum_probs=91.9
Q ss_pred hhcCccCCceec-----cCCceeecCCCCCc-EEEEEec-CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHH
Q 018808 14 LLSSSARDFLIR-----SNGDQVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAF 86 (350)
Q Consensus 14 ~~g~~~p~f~~~-----~~g~~~~l~~~~gk-~~v~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~ 86 (350)
.+|+++|+|++. .+|+++++++++|| ++|+||. .||+.|..+++.|.+++++|.+++ +++++|++|+.....
T Consensus 7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g-~~vv~IS~d~~~~~~ 85 (199)
T PTZ00253 7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN-CEVLACSMDSEYAHL 85 (199)
T ss_pred ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC-CEEEEEeCCCHHHHH
Confidence 579999999852 35689999999999 9999996 789999999999999999999885 999999998764422
Q ss_pred Hh--HHh-c--CCCcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 87 KG--YFS-K--MPWLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 87 ~~--~~~-~--~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
.. ... . .+-..+|+. .|...++++.||+. .+|..+|||++|++++.
T Consensus 86 ~~~~~~~~~~~~~~~~fpll-~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~ 142 (199)
T PTZ00253 86 QWTLQERKKGGLGTMAIPML-ADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQI 142 (199)
T ss_pred HHHhChHhhCCccccccceE-ECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEE
Confidence 11 111 1 122455654 33456999999985 47899999999999874
No 103
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.56 E-value=1.8e-14 Score=108.35 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=61.5
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
+++||+++|.|||+||++|+.+.|.+.++++++++ +.++.|..++. ...++++|
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~~----------------------~~~l~~~~ 68 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESSI----------------------KPSLLSRY 68 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCCC----------------------CHHHHHhc
Confidence 56899999999999999999999999999999853 67777765411 14588999
Q ss_pred CCCCccEEEEECCCCCEEeccch
Q 018808 274 ELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 274 ~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+|.++||+++++ +| .+.++.|
T Consensus 69 ~V~~~PT~~lf~-~g-~~~~~~G 89 (100)
T cd02999 69 GVVGFPTILLFN-ST-PRVRYNG 89 (100)
T ss_pred CCeecCEEEEEc-CC-ceeEecC
Confidence 999999999995 55 5566666
No 104
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.55 E-value=1.1e-13 Score=118.00 Aligned_cols=116 Identities=16% Similarity=0.280 Sum_probs=87.4
Q ss_pred hcCccCCceec-cCCceeecCCCCC-c--EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHH--HHHh
Q 018808 15 LSSSARDFLIR-SNGDQVKLDSLKG-K--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE--AFKG 88 (350)
Q Consensus 15 ~g~~~p~f~~~-~~g~~~~l~~~~g-k--~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~--~~~~ 88 (350)
+|+.+|+|++. .+| .+++++++| + +++.||++|||.|..+++.|++++++|++++ +++++|++|+... .|.+
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g-v~vigvS~D~~~~~~~~~~ 78 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN-VKLIGLSVDSVESHIKWIE 78 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC-CEEEEEECCCHHHHHHHHh
Confidence 48999999885 455 699999988 6 4567999999999999999999999998875 9999999986432 2222
Q ss_pred HHhcC--CCcccccCChhhHHHHHhhcCCC--------CcceEEEECCCCeEEec
Q 018808 89 YFSKM--PWLAVPFSDSETRDKLDELFKVM--------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 89 ~~~~~--~~~~~~~~~~~~~~~l~~~~~v~--------~~P~~~lid~~G~v~~~ 133 (350)
.+..+ .-..||+. .|....+++.||+. ..|.++|||++|+|++.
T Consensus 79 ~i~~~~~~~~~fpil-~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~ 132 (203)
T cd03016 79 DIEEYTGVEIPFPII-ADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI 132 (203)
T ss_pred hHHHhcCCCCceeEE-ECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEE
Confidence 22221 12334433 34456899999975 24579999999999874
No 105
>PHA02278 thioredoxin-like protein
Probab=99.55 E-value=2.6e-14 Score=107.56 Aligned_cols=79 Identities=19% Similarity=0.262 Sum_probs=65.3
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++++++|+|||+||+||+.+.|.+.++.+++... +.++.|++|.+.. + ..+++++|+|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~---~~~~~vdvd~~~~------------------d-~~~l~~~~~I 70 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK---KPILTLNLDAEDV------------------D-REKAVKLFDI 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC---ceEEEEECCcccc------------------c-cHHHHHHCCC
Confidence 5689999999999999999999999998775433 6788888874310 0 1458899999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++||++++ ++|+.+.+..|.
T Consensus 71 ~~iPT~i~f-k~G~~v~~~~G~ 91 (103)
T PHA02278 71 MSTPVLIGY-KDGQLVKKYEDQ 91 (103)
T ss_pred ccccEEEEE-ECCEEEEEEeCC
Confidence 999999999 899999998883
No 106
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.55 E-value=3.1e-14 Score=124.18 Aligned_cols=118 Identities=21% Similarity=0.205 Sum_probs=90.3
Q ss_pred hhcCccCCceec--cCC--ceeecCCC-CCc-EEEEEe-cCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC--HH
Q 018808 14 LLSSSARDFLIR--SNG--DQVKLDSL-KGK-IGLYFS-ASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--DE 84 (350)
Q Consensus 14 ~~g~~~p~f~~~--~~g--~~~~l~~~-~gk-~~v~F~-~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~--~~ 84 (350)
.+|+.+|+|++. .+| +.++++++ +|+ ++|+|| ++||+.|..+++.|.+++++|++++ +++++|+.|+. ..
T Consensus 69 ~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g-v~VigIS~Ds~~~h~ 147 (261)
T PTZ00137 69 LVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG-VKVLGVSVDSPFSHK 147 (261)
T ss_pred cCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC-CEEEEEECCCHHHHH
Confidence 679999999873 345 46999998 888 777766 8999999999999999999999885 99999999873 22
Q ss_pred HHHhH-HhcC--CCcccccCChhhHHHHHhhcCCC-----CcceEEEECCCCeEEec
Q 018808 85 AFKGY-FSKM--PWLAVPFSDSETRDKLDELFKVM-----GIPHLVILDENGKVLSD 133 (350)
Q Consensus 85 ~~~~~-~~~~--~~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~ 133 (350)
.|.+. .+.. ....+|.. .|....+++.||+. ..|.++|||++|+|++.
T Consensus 148 aw~~~~~~~~g~~~l~fPlL-sD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~ 203 (261)
T PTZ00137 148 AWKELDVRQGGVSPLKFPLF-SDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHV 203 (261)
T ss_pred HHHhhhhhhccccCcceEEE-EcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEE
Confidence 33332 2221 22345543 22346899999985 58999999999999885
No 107
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.55 E-value=3.5e-14 Score=121.55 Aligned_cols=117 Identities=18% Similarity=0.301 Sum_probs=90.6
Q ss_pred hhcCccCCceec-cCCceeec-CCCCCc-EE-EEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHH--HHH
Q 018808 14 LLSSSARDFLIR-SNGDQVKL-DSLKGK-IG-LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE--AFK 87 (350)
Q Consensus 14 ~~g~~~p~f~~~-~~g~~~~l-~~~~gk-~~-v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~--~~~ 87 (350)
.+|+.+|+|++. .+|+ +++ ++++|| ++ ++||++||+.|..+++.|.+++++|++++ +++++|++|+... .|.
T Consensus 8 ~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g-~~VigvS~Ds~~~h~aw~ 85 (215)
T PRK13191 8 LIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN-TELIGLSVDSNISHIEWV 85 (215)
T ss_pred cCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC-CEEEEEECCCHHHHHHHH
Confidence 479999999884 6776 556 558999 55 58899999999999999999999999885 9999999987644 455
Q ss_pred hHHhcC-C-CcccccCChhhHHHHHhhcCCC-------CcceEEEECCCCeEEec
Q 018808 88 GYFSKM-P-WLAVPFSDSETRDKLDELFKVM-------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~-~-~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~ 133 (350)
++.+.. + ...+|.. .|....+++.||+. ..|.++|||++|+|.+.
T Consensus 86 ~~~~~~~~~~i~fPll-sD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 139 (215)
T PRK13191 86 MWIEKNLKVEVPFPII-ADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLI 139 (215)
T ss_pred hhHHHhcCCCCceEEE-ECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEE
Confidence 555531 1 2334433 33446999999974 47999999999999874
No 108
>PRK13189 peroxiredoxin; Provisional
Probab=99.53 E-value=4.7e-14 Score=121.43 Aligned_cols=117 Identities=18% Similarity=0.334 Sum_probs=88.9
Q ss_pred hhcCccCCceec-cCCceeecCC-CCCc--EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHH--HHH
Q 018808 14 LLSSSARDFLIR-SNGDQVKLDS-LKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDE--AFK 87 (350)
Q Consensus 14 ~~g~~~p~f~~~-~~g~~~~l~~-~~gk--~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~--~~~ 87 (350)
.+|+.+|+|++. .+| .+++++ ++|| +|++||++||+.|..+++.|.+++++|++++ +++++|++|+... .|.
T Consensus 10 ~vG~~aPdF~~~~~~g-~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~-v~VigvS~D~~~~h~aw~ 87 (222)
T PRK13189 10 LIGDKFPEFEVKTTHG-PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN-TELIGLSIDQVFSHIKWV 87 (222)
T ss_pred cCCCcCCCcEeEcCCC-CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC-CEEEEEECCCHHHHHHHH
Confidence 469999999985 566 477876 5999 4557899999999999999999999998875 9999999986543 333
Q ss_pred hHHhc-CC-CcccccCChhhHHHHHhhcCCC-------CcceEEEECCCCeEEec
Q 018808 88 GYFSK-MP-WLAVPFSDSETRDKLDELFKVM-------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~-~~-~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~ 133 (350)
+.+.. .+ ...+|.. .|....+++.||+. ..|.++|||++|+|++.
T Consensus 88 ~~~~~~~g~~i~fPll-sD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 141 (222)
T PRK13189 88 EWIKEKLGVEIEFPII-ADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAI 141 (222)
T ss_pred HhHHHhcCcCcceeEE-EcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEE
Confidence 33222 22 1345533 33446899999975 56899999999999764
No 109
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.53 E-value=7.5e-14 Score=104.40 Aligned_cols=74 Identities=20% Similarity=0.361 Sum_probs=65.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++++++|+||++||++|+.+.|.+.++++.+.+. +.++.|+++.. .+++++|++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~-----------------------~~l~~~~~i 64 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQ-----------------------PQIAQQFGV 64 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCC-----------------------HHHHHHcCC
Confidence 4789999999999999999999999999998753 88888888743 458999999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|++++++ +|+++.+..|
T Consensus 65 ~~~Pt~~~~~-~g~~~~~~~g 84 (96)
T cd02956 65 QALPTVYLFA-AGQPVDGFQG 84 (96)
T ss_pred CCCCEEEEEe-CCEEeeeecC
Confidence 9999999995 9999887776
No 110
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.52 E-value=8.5e-14 Score=106.92 Aligned_cols=76 Identities=20% Similarity=0.223 Sum_probs=66.4
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
..+++++|+||++||++|+.+.|.+.++.+++++.+ +.++.|++|.. ..++++|+
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~d~~-----------------------~~l~~~~~ 76 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLG--VGIATVNAGHE-----------------------RRLARKLG 76 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcC--ceEEEEecccc-----------------------HHHHHHcC
Confidence 367899999999999999999999999999997654 88888887743 45789999
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
|.++|+++++ ++|+++.+..|
T Consensus 77 V~~~Pt~~i~-~~g~~~~~~~G 97 (111)
T cd02963 77 AHSVPAIVGI-INGQVTFYHDS 97 (111)
T ss_pred CccCCEEEEE-ECCEEEEEecC
Confidence 9999999999 69998888776
No 111
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.52 E-value=8.9e-14 Score=105.16 Aligned_cols=75 Identities=7% Similarity=0.021 Sum_probs=64.9
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|+|||+||++|+.+.|.+.++++++++.. +.++.|+.| . .+++++|+|
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~--~~~~~vd~d-~-----------------------~~~~~~~~v 69 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDL--LHFATAEAD-T-----------------------IDTLKRYRG 69 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCc--EEEEEEeCC-C-----------------------HHHHHHcCC
Confidence 47899999999999999999999999999987544 788888777 2 347899999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++|+++++ ++|+++.+..|.
T Consensus 70 ~~~Pt~~~~-~~g~~~~~~~G~ 90 (102)
T cd02948 70 KCEPTFLFY-KNGELVAVIRGA 90 (102)
T ss_pred CcCcEEEEE-ECCEEEEEEecC
Confidence 999998888 799999888873
No 112
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.52 E-value=8.7e-14 Score=115.45 Aligned_cols=122 Identities=23% Similarity=0.396 Sum_probs=98.8
Q ss_pred cccccCCc-eecCCCceeeccccCCCEEEEEEeccCCc-cChhhHHHHHHHHHHHhcCCCcEEEEEEeCC---CCHHHHH
Q 018808 174 LTSHSRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGKGESFEIVLISLD---DEEESFK 248 (350)
Q Consensus 174 ~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d---~~~~~~~ 248 (350)
.....++| +.+.+|+.+++++++||++||+|..+.|| .|...+..|.++++++.+++.++++++||+| ++++.++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~ 107 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLK 107 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHH
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHH
Confidence 44567789 89999999999999999999999999998 7999999999999999987667999999998 5788899
Q ss_pred HhhcCC--CCccccCCchhHHHHHHHcCCC----------------CccEEEEECCCCCEEeccc
Q 018808 249 RDLGSM--PWLALPFKDKSREKLARYFELS----------------TLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 249 ~~~~~~--~~~~~~~~~~~~~~~~~~~~v~----------------~~P~~~lid~~G~i~~~~~ 295 (350)
+|.+.+ .|..+....+...++.+.|++. ....++||||+|+++..+.
T Consensus 108 ~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 108 KYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 998865 3455555556667888888852 3447899999999998764
No 113
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.51 E-value=9.2e-14 Score=104.96 Aligned_cols=75 Identities=17% Similarity=0.295 Sum_probs=65.5
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
..+++++|.||++||++|+.+.|.+.++++++++. +.+..|++|.. ..++++|+
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~ 69 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDD-----------------------RMLCRSQG 69 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCcc-----------------------HHHHHHcC
Confidence 35689999999999999999999999999999754 88999998854 45789999
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
|.++||++++ ++|+.+.++.|
T Consensus 70 v~~~Pt~~~~-~~g~~~~~~~G 90 (101)
T cd03003 70 VNSYPSLYVF-PSGMNPEKYYG 90 (101)
T ss_pred CCccCEEEEE-cCCCCcccCCC
Confidence 9999999999 88988777666
No 114
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.50 E-value=1.4e-13 Score=108.18 Aligned_cols=89 Identities=22% Similarity=0.394 Sum_probs=68.6
Q ss_pred CC-CEEEEEEeccCCccChhhHHHHH---HHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 018808 196 EG-KTIGLYFSMSSYKASAEFTPRLV---EVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 271 (350)
Q Consensus 196 ~g-k~vlv~f~~~~C~~C~~~~~~l~---~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (350)
.| |+++|+||++||++|+.+.+.+. ++.+.+.+. +.++.|++|.+.... . +........++++
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~i~~d~~~~~~-~---------~~~~~~~~~~l~~ 78 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAH---FVVVYINIDGDKEVT-D---------FDGEALSEKELAR 78 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhh---eEEEEEEccCCceee-c---------cCCCCccHHHHHH
Confidence 57 89999999999999999999875 566666543 889999988543211 1 1111224568999
Q ss_pred HcCCCCccEEEEECCC-CCEEeccchh
Q 018808 272 YFELSTLPTLVIIGPD-GKTLHSNVAE 297 (350)
Q Consensus 272 ~~~v~~~P~~~lid~~-G~i~~~~~~~ 297 (350)
+|++.++|+++++|++ |+++.+..|.
T Consensus 79 ~~~v~~~Pt~~~~~~~gg~~~~~~~G~ 105 (125)
T cd02951 79 KYRVRFTPTVIFLDPEGGKEIARLPGY 105 (125)
T ss_pred HcCCccccEEEEEcCCCCceeEEecCC
Confidence 9999999999999999 8999998884
No 115
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.50 E-value=6.2e-13 Score=110.49 Aligned_cols=76 Identities=22% Similarity=0.301 Sum_probs=66.4
Q ss_pred CccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCHHHHH
Q 018808 17 SSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFK 87 (350)
Q Consensus 17 ~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~~~~~ 87 (350)
.++++|++ +.+|+.++|++++|| ++|.|||+||+.|. .++.|.+++++|++++ +.+++++++ ++.++++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~g-l~Vlg~p~nqf~~qe~~~~~ei~ 80 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQG-FVVLGFPCNQFLGQEPGSDEEIK 80 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCC-eEEEEeeccccccCCCCCHHHHH
Confidence 46789988 689999999999999 99999999999996 5999999999999886 999999986 3567888
Q ss_pred hHHh-cCC
Q 018808 88 GYFS-KMP 94 (350)
Q Consensus 88 ~~~~-~~~ 94 (350)
+|++ .++
T Consensus 81 ~f~~~~~g 88 (183)
T PRK10606 81 TYCRTTWG 88 (183)
T ss_pred HHHHHccC
Confidence 8886 454
No 116
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.48 E-value=4e-13 Score=105.91 Aligned_cols=113 Identities=14% Similarity=0.172 Sum_probs=87.4
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++|||.|||+||+||+.+.|.|.++.+++++. +.|+.|++|+. .+++..|+|
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~-----------------------~dla~~y~I 75 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEV-----------------------PDFNTMYEL 75 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCC-----------------------HHHHHHcCc
Confidence 4679999999999999999999999999999765 88899999865 568999999
Q ss_pred CCccEEE-EECCCCC-EEeccchhhhhhcCCccCCCCccchHHHHHHHHHHHhcccccceeccCCcCe
Q 018808 276 STLPTLV-IIGPDGK-TLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDF 341 (350)
Q Consensus 276 ~~~P~~~-lid~~G~-i~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 341 (350)
.+.|+++ ++ ++|+ .+.+..|... .+.|.....++|.++.+....+......++....+|
T Consensus 76 ~~~~t~~~ff-k~g~~~vd~~tG~~~------k~~~~~~~k~~l~~~i~~~~~~a~~g~~~~~~~~~~ 136 (142)
T PLN00410 76 YDPCTVMFFF-RNKHIMIDLGTGNNN------KINWALKDKQEFIDIVETVYRGARKGRGLVISPKDY 136 (142)
T ss_pred cCCCcEEEEE-ECCeEEEEEeccccc------ccccccCCHHHHHHHHHHHHHHHhcCCeEEECCCcc
Confidence 9877777 66 8998 7777666321 122335566777777776666666667777777776
No 117
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.48 E-value=1e-13 Score=122.77 Aligned_cols=92 Identities=17% Similarity=0.267 Sum_probs=72.5
Q ss_pred ceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHH
Q 018808 188 RKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE 267 (350)
Q Consensus 188 ~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (350)
+...++++.|+++||+||++||++|+.+.|.|++++++++ +.|++|++|.+.. ..||.. +.+.
T Consensus 157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~-----------~~fp~~-~~d~ 219 (271)
T TIGR02740 157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPL-----------PGFPNA-RPDA 219 (271)
T ss_pred HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCcc-----------ccCCcc-cCCH
Confidence 4466778899999999999999999999999999999884 8899999986532 124443 2335
Q ss_pred HHHHHcCCCCccEEEEECCCC-CEEeccch
Q 018808 268 KLARYFELSTLPTLVIIGPDG-KTLHSNVA 296 (350)
Q Consensus 268 ~~~~~~~v~~~P~~~lid~~G-~i~~~~~~ 296 (350)
.++++|||.++|+++|+|++| ++.....|
T Consensus 220 ~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G 249 (271)
T TIGR02740 220 GQAQQLKIRTVPAVFLADPDPNQFTPIGFG 249 (271)
T ss_pred HHHHHcCCCcCCeEEEEECCCCEEEEEEeC
Confidence 578999999999999999965 44444445
No 118
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2e-13 Score=118.08 Aligned_cols=77 Identities=21% Similarity=0.332 Sum_probs=70.0
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
.+.++|||+||++||++|+..+|.|.++..+++++ +.+..|++|.. ..++.+||
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~-----------------------p~vAaqfg 94 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAE-----------------------PMVAAQFG 94 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcc-----------------------hhHHHHhC
Confidence 34579999999999999999999999999999987 99999999965 45899999
Q ss_pred CCCccEEEEECCCCCEEeccchhh
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~~~ 298 (350)
|+++|++|+| .+|+.+....|..
T Consensus 95 iqsIPtV~af-~dGqpVdgF~G~q 117 (304)
T COG3118 95 VQSIPTVYAF-KDGQPVDGFQGAQ 117 (304)
T ss_pred cCcCCeEEEe-eCCcCccccCCCC
Confidence 9999999999 9999999888844
No 119
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.46 E-value=3.8e-13 Score=102.11 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=65.9
Q ss_pred CCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
.||+++|.||++||++|+.+.+.+ .++.+.+.+ + +.++.|+++.+.. ...+++++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~--~~~~~vd~~~~~~-------------------~~~~~~~~ 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-D--VVLLRADWTKNDP-------------------EITALLKR 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-C--eEEEEEecCCCCH-------------------HHHHHHHH
Confidence 578999999999999999999877 577777765 3 8899888764321 12568899
Q ss_pred cCCCCccEEEEECC-CCCEEeccchh
Q 018808 273 FELSTLPTLVIIGP-DGKTLHSNVAE 297 (350)
Q Consensus 273 ~~v~~~P~~~lid~-~G~i~~~~~~~ 297 (350)
|++.++|+++++++ +|+++.+..|.
T Consensus 68 ~~i~~~Pti~~~~~~~g~~~~~~~G~ 93 (104)
T cd02953 68 FGVFGPPTYLFYGPGGEPEPLRLPGF 93 (104)
T ss_pred cCCCCCCEEEEECCCCCCCCcccccc
Confidence 99999999999998 89999888774
No 120
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.46 E-value=4.3e-13 Score=101.72 Aligned_cols=70 Identities=17% Similarity=0.366 Sum_probs=62.7
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++.+++++ .+.++.|++|..+ .++..|+|
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~------------------------~la~~~~V 66 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVP------------------------DFNKMYEL 66 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCH------------------------HHHHHcCC
Confidence 456 99999999999999999999999999975 3789999988775 68999999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++||++++ ++|+.+.+
T Consensus 67 ~~iPTf~~f-k~G~~v~~ 83 (114)
T cd02954 67 YDPPTVMFF-FRNKHMKI 83 (114)
T ss_pred CCCCEEEEE-ECCEEEEE
Confidence 999999999 79998875
No 121
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.45 E-value=2.5e-13 Score=109.22 Aligned_cols=92 Identities=21% Similarity=0.269 Sum_probs=76.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++++++|+||++||++|+.+.|.+.++.+++.+.+ +.++.|++|.. .+++++|+|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~--v~f~~VDvd~~-----------------------~~la~~~~V 100 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNN--LKFGKIDIGRF-----------------------PNVAEKFRV 100 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--eEEEEEECCCC-----------------------HHHHHHcCc
Confidence 35799999999999999999999999999987655 99999999865 346778888
Q ss_pred CC------ccEEEEECCCCCEEeccchhhhhhcCCccCCCCccc
Q 018808 276 ST------LPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEK 313 (350)
Q Consensus 276 ~~------~P~~~lid~~G~i~~~~~~~~~~~~~~~~~p~~~~~ 313 (350)
.. +||++++ ++|+.+.+..|....+.+...+-|+-+.
T Consensus 101 ~~~~~v~~~PT~ilf-~~Gk~v~r~~G~~~~~~~~~~~~~~~~~ 143 (152)
T cd02962 101 STSPLSKQLPTIILF-QGGKEVARRPYYNDSKGRAVPFTFSKEN 143 (152)
T ss_pred eecCCcCCCCEEEEE-ECCEEEEEEeccccCccccccccccHHH
Confidence 76 9999999 7999999998866666666566666543
No 122
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.45 E-value=4.4e-13 Score=102.55 Aligned_cols=74 Identities=9% Similarity=0.007 Sum_probs=63.6
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHH-HHcC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA-RYFE 274 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 274 (350)
.++++||.|||+||++|+.+.|.+.++++++++. +.++.|++|.+ ..++ ++|+
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~-----------------------~~l~~~~~~ 81 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWP-----------------------QGKCRKQKH 81 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCC-----------------------hHHHHHhcC
Confidence 4689999999999999999999999999999754 88999988854 3466 5899
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
|.++||++++ ++|+...++.|
T Consensus 82 I~~~PTl~lf-~~g~~~~~y~G 102 (113)
T cd03006 82 FFYFPVIHLY-YRSRGPIEYKG 102 (113)
T ss_pred CcccCEEEEE-ECCccceEEeC
Confidence 9999999999 88887666665
No 123
>PTZ00062 glutaredoxin; Provisional
Probab=99.45 E-value=1.4e-12 Score=109.75 Aligned_cols=58 Identities=10% Similarity=0.134 Sum_probs=51.7
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
++++||++||+.|+.+.+.|.+|.++|+ ++.|+.|+.+ |+|.++|
T Consensus 20 ~vl~f~a~w~~~C~~m~~vl~~l~~~~~---~~~F~~V~~d--------------------------------~~V~~vP 64 (204)
T PTZ00062 20 LVLYVKSSKEPEYEQLMDVCNALVEDFP---SLEFYVVNLA--------------------------------DANNEYG 64 (204)
T ss_pred EEEEEeCCCCcchHHHHHHHHHHHHHCC---CcEEEEEccc--------------------------------cCcccce
Confidence 9999999999999999999999999986 3778888632 8999999
Q ss_pred eEEEECCCCeEEec
Q 018808 120 HLVILDENGKVLSD 133 (350)
Q Consensus 120 ~~~lid~~G~v~~~ 133 (350)
+++++ ++|+.+.+
T Consensus 65 tfv~~-~~g~~i~r 77 (204)
T PTZ00062 65 VFEFY-QNSQLINS 77 (204)
T ss_pred EEEEE-ECCEEEee
Confidence 99999 79998875
No 124
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.45 E-value=5e-13 Score=101.20 Aligned_cols=73 Identities=25% Similarity=0.528 Sum_probs=61.9
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
.+|+ ++|+||++||++|+.+.|.|.++++++. ++.++.|+.|...+ ...+++.|+
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~d~~~~---------------------~~~l~~~~~ 68 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN---DVVFLLVNGDENDS---------------------TMELCRREK 68 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CCEEEEEECCCChH---------------------HHHHHHHcC
Confidence 4588 9999999999999999999999999982 48889998876531 136889999
Q ss_pred CCCcceEEEECCCCeEEec
Q 018808 115 VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 115 v~~~P~~~lid~~G~v~~~ 133 (350)
|.++||++++ ++|+++.+
T Consensus 69 V~~~Pt~~~~-~~G~~v~~ 86 (103)
T cd02985 69 IIEVPHFLFY-KDGEKIHE 86 (103)
T ss_pred CCcCCEEEEE-eCCeEEEE
Confidence 9999998888 89998764
No 125
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.44 E-value=4.6e-13 Score=103.11 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=69.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.||+++++||++|||+|+.+.+.+.+..+-...-..++.++.++++++............. +.......++++.|||
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYGV 80 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcCC
Confidence 5789999999999999999988887654321111123889999998766555555442221 2233345689999999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++|+++++|++|+++.+..|.
T Consensus 81 ~gtPt~~~~d~~G~~v~~~~G~ 102 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYRIPGY 102 (112)
T ss_dssp -SSSEEEECTTTSCEEEEEESS
T ss_pred CccCEEEEEcCCCCEEEEecCC
Confidence 9999999999999999888874
No 126
>PRK09381 trxA thioredoxin; Provisional
Probab=99.43 E-value=1.1e-12 Score=100.52 Aligned_cols=74 Identities=19% Similarity=0.346 Sum_probs=64.9
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|+||++||++|+.+.|.++++.+++.+. +.++.|+++.. ..+.++|++.
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v~ 74 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQN-----------------------PGTAPKYGIR 74 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCC-----------------------hhHHHhCCCC
Confidence 679999999999999999999999999999754 88999988754 3467899999
Q ss_pred CccEEEEECCCCCEEeccchh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~ 297 (350)
.+|+++++ ++|+++.+..|.
T Consensus 75 ~~Pt~~~~-~~G~~~~~~~G~ 94 (109)
T PRK09381 75 GIPTLLLF-KNGEVAATKVGA 94 (109)
T ss_pred cCCEEEEE-eCCeEEEEecCC
Confidence 99999999 799999887763
No 127
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.43 E-value=3.9e-13 Score=107.70 Aligned_cols=84 Identities=24% Similarity=0.430 Sum_probs=67.7
Q ss_pred cCCceeecCC--CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCC
Q 018808 26 SNGDQVKLDS--LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (350)
Q Consensus 26 ~~g~~~~l~~--~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (350)
++++...+++ ..|+ ++|+||++||++|+.+.|.|.++++++.+ .+.|+.|++|....
T Consensus 6 ~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~------------------ 65 (142)
T cd02950 6 LAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKW------------------ 65 (142)
T ss_pred HhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCccc------------------
Confidence 3444444443 4778 99999999999999999999999999975 47888888875421
Q ss_pred hhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 103 SETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
..+++.|++.++|++++++++|+++.+
T Consensus 66 ----~~~~~~~~V~~iPt~v~~~~~G~~v~~ 92 (142)
T cd02950 66 ----LPEIDRYRVDGIPHFVFLDREGNEEGQ 92 (142)
T ss_pred ----HHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence 257788999999999999999998874
No 128
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.2e-13 Score=101.03 Aligned_cols=74 Identities=19% Similarity=0.359 Sum_probs=66.9
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+|.++++|+|+||+||+.+.|.+.++..+|.+ +.++.|++|. ..++++.++|.
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde-----------------------~~~~~~~~~V~ 73 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE-----------------------LEEVAKEFNVK 73 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc-----------------------CHhHHHhcCce
Confidence 68999999999999999999999999999975 7899998884 16689999999
Q ss_pred CccEEEEECCCCCEEeccchhh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~~ 298 (350)
++||++++ ++|+.+.+..|..
T Consensus 74 ~~PTf~f~-k~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 74 AMPTFVFY-KGGEEVDEVVGAN 94 (106)
T ss_pred EeeEEEEE-ECCEEEEEEecCC
Confidence 99999999 9999999988843
No 129
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.42 E-value=8.5e-13 Score=99.27 Aligned_cols=96 Identities=15% Similarity=0.252 Sum_probs=74.4
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+|+|.|+++||+||+.+.|.|.++++++++. +.++.|++|.. .++++.|+|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev-----------------------~dva~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKV-----------------------PVYTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEecccc-----------------------HHHHHhcCc
Confidence 5789999999999999999999999999999654 78888888854 568999999
Q ss_pred CCccEEEEECCCCCEEeccchhhhhhcCCccCCCCccchHHHHHHHH
Q 018808 276 STLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQR 322 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 322 (350)
.+.|+++++ .+|+-+....|-. .-..+.|..+..+++..+.+
T Consensus 67 ~amPtfvff-kngkh~~~d~gt~----~~~k~~~~~~~k~~~idi~e 108 (114)
T cd02986 67 SYIPSTIFF-FNGQHMKVDYGSP----DHTKFVGSFKTKQDFIDLIE 108 (114)
T ss_pred eeCcEEEEE-ECCcEEEEecCCC----CCcEEEEEcCchhHHHHHHH
Confidence 999999999 8888777666521 11234445555555555444
No 130
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.41 E-value=1.4e-12 Score=99.06 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=63.7
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|.||++||++|+.+.|.+.++.+++.+. +.+..|+++.. .+++++|+|.
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~i~ 72 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKY-----------------------ESLCQQANIR 72 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCch-----------------------HHHHHHcCCC
Confidence 569999999999999999999999999998643 88888888743 4588999999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
++|+++++..+|+.+.++.|
T Consensus 73 ~~Pt~~~~~~g~~~~~~~~G 92 (104)
T cd03004 73 AYPTIRLYPGNASKYHSYNG 92 (104)
T ss_pred cccEEEEEcCCCCCceEccC
Confidence 99999999665588877776
No 131
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.41 E-value=1e-12 Score=98.74 Aligned_cols=69 Identities=16% Similarity=0.369 Sum_probs=57.1
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhh
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (350)
++++|| ++|+||++||++|+.+.|.|.++++++++ +.++.|+.+... ..+++.
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~~~~-----------------------~~l~~~ 67 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEESSIK-----------------------PSLLSR 67 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECCCCC-----------------------HHHHHh
Confidence 357899 99999999999999999999999999863 667777654211 268899
Q ss_pred cCCCCcceEEEECCCCe
Q 018808 113 FKVMGIPHLVILDENGK 129 (350)
Q Consensus 113 ~~v~~~P~~~lid~~G~ 129 (350)
|++.++||+++++ +|.
T Consensus 68 ~~V~~~PT~~lf~-~g~ 83 (100)
T cd02999 68 YGVVGFPTILLFN-STP 83 (100)
T ss_pred cCCeecCEEEEEc-CCc
Confidence 9999999999996 443
No 132
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.40 E-value=8.6e-13 Score=106.48 Aligned_cols=80 Identities=18% Similarity=0.319 Sum_probs=57.3
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhc---
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF--- 113 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--- 113 (350)
++ .+|+||++||++|+.++|.|.+++++++ +.+++|+.|.... ..++. ..+.+. ..+...|
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~----~~Vi~Vs~d~~~~------~~fp~----~~~~~~-~~~~~~~~~~ 114 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG----LPVYAFSLDGQGL------TGFPD----PLPATP-EVMQTFFPNP 114 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC----CcEEEEEeCCCcc------ccccc----ccCCch-HHHHHHhccC
Confidence 45 7999999999999999999999999882 6788888876431 11111 111111 1233445
Q ss_pred CCCCcceEEEECCCCeEEe
Q 018808 114 KVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 114 ~v~~~P~~~lid~~G~v~~ 132 (350)
++.++|+++++|++|+++.
T Consensus 115 ~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 115 RPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred CCCCCCeEEEEeCCCCEEE
Confidence 8899999999999987644
No 133
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.40 E-value=2.5e-12 Score=97.08 Aligned_cols=73 Identities=21% Similarity=0.275 Sum_probs=60.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
+|+ ++|.||++||++|+.+.|.+.++++.++..+ +.+..|+++.. ..++++|+|
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~~~~-----------------------~~~~~~~~i 69 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLG--INVAKVDVTQE-----------------------PGLSGRFFV 69 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCC--eEEEEEEccCC-----------------------HhHHHHcCC
Confidence 455 6799999999999999999999998876544 88888887743 347889999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|++ .++.|
T Consensus 70 ~~~Pt~~~~-~~g~~-~~~~G 88 (101)
T cd02994 70 TALPTIYHA-KDGVF-RRYQG 88 (101)
T ss_pred cccCEEEEe-CCCCE-EEecC
Confidence 999999998 88985 55555
No 134
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.40 E-value=2.6e-12 Score=97.47 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=60.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++++++|.||++||++|+.+.|.+.++++++++.+..+.+..++++.. ..++++|+|
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~I 70 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-----------------------SSIASEFGV 70 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-----------------------HhHHhhcCC
Confidence 457999999999999999999999999999976543477777776532 357889999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ .+|. ..++.|
T Consensus 71 ~~~Pt~~l~-~~~~-~~~~~G 89 (104)
T cd03000 71 RGYPTIKLL-KGDL-AYNYRG 89 (104)
T ss_pred ccccEEEEE-cCCC-ceeecC
Confidence 999999999 4554 344444
No 135
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.39 E-value=1.6e-12 Score=98.24 Aligned_cols=74 Identities=16% Similarity=0.277 Sum_probs=62.8
Q ss_pred EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCc
Q 018808 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTL 278 (350)
Q Consensus 199 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 278 (350)
.++|.||++||++|+.+.|.+.++++++++....+.++.|+++.. ..++++|++.++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-----------------------~~~~~~~~v~~~ 74 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-----------------------RELCSEFQVRGY 74 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-----------------------hhhHhhcCCCcC
Confidence 499999999999999999999999999986222488888887643 357889999999
Q ss_pred cEEEEECCCCCEEeccch
Q 018808 279 PTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 279 P~~~lid~~G~i~~~~~~ 296 (350)
|+++++ ++|+.+.++.|
T Consensus 75 Pt~~~~-~~g~~~~~~~G 91 (102)
T cd03005 75 PTLLLF-KDGEKVDKYKG 91 (102)
T ss_pred CEEEEE-eCCCeeeEeeC
Confidence 999999 78988877777
No 136
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.38 E-value=1.5e-11 Score=104.58 Aligned_cols=117 Identities=24% Similarity=0.457 Sum_probs=100.4
Q ss_pred Cc-eecCCCceeeccccCCCEEEEEEeccCCc-cChhhHHHHHHHHHHHh-cCCCcEEEEEEeCC---CCHHHHHHhhc-
Q 018808 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLK-GKGESFEIVLISLD---DEEESFKRDLG- 252 (350)
Q Consensus 180 ~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~-~~~~~~~vv~v~~d---~~~~~~~~~~~- 252 (350)
+| +.+.+|+.+++.+++||+++|+|..+.|| .|..++..|..+.+++. ..+.+++++.|++| ++++.+++|..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 57 78999999999999999999999999999 79999999999999999 66677999999998 68888899988
Q ss_pred CC--CCccccCCchhHHHHHHHcCCCC---------------ccEEEEECCCCCEEeccch
Q 018808 253 SM--PWLALPFKDKSREKLARYFELST---------------LPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 253 ~~--~~~~~~~~~~~~~~~~~~~~v~~---------------~P~~~lid~~G~i~~~~~~ 296 (350)
.. .|..+........++.++|++.. ...++++|++|+++....+
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~ 189 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDY 189 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecC
Confidence 33 36667776777788999998752 3367899999999988765
No 137
>PRK10996 thioredoxin 2; Provisional
Probab=99.38 E-value=3.8e-12 Score=101.71 Aligned_cols=75 Identities=19% Similarity=0.361 Sum_probs=65.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+|+++|+||++||++|+.+.|.+.++++++.+. +.++.|+.+.. .++.++|+|
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~-----------------------~~l~~~~~V 104 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAE-----------------------RELSARFRI 104 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCC-----------------------HHHHHhcCC
Confidence 4789999999999999999999999999888654 88888877643 458899999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++|+++++ ++|+++.+..|.
T Consensus 105 ~~~Ptlii~-~~G~~v~~~~G~ 125 (139)
T PRK10996 105 RSIPTIMIF-KNGQVVDMLNGA 125 (139)
T ss_pred CccCEEEEE-ECCEEEEEEcCC
Confidence 999999988 699999887773
No 138
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.38 E-value=3.2e-12 Score=96.29 Aligned_cols=75 Identities=20% Similarity=0.355 Sum_probs=67.1
Q ss_pred CCCEEEEEEeccC--CccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 196 EGKTIGLYFSMSS--YKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 196 ~gk~vlv~f~~~~--C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
.|.+++|+||++| ||+|+.+.|.|.++.+++.++ +.++.|+.|+. .+++.+|
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~-----------------------~~la~~f 79 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADE-----------------------QALAARF 79 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCC-----------------------HHHHHHc
Confidence 4568999999997 999999999999999999866 88889988865 4689999
Q ss_pred CCCCccEEEEECCCCCEEeccchh
Q 018808 274 ELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 274 ~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+|.++||++++ ++|+++.+..|.
T Consensus 80 ~V~sIPTli~f-kdGk~v~~~~G~ 102 (111)
T cd02965 80 GVLRTPALLFF-RDGRYVGVLAGI 102 (111)
T ss_pred CCCcCCEEEEE-ECCEEEEEEeCc
Confidence 99999999999 899999998874
No 139
>PHA02278 thioredoxin-like protein
Probab=99.37 E-value=3.2e-12 Score=96.21 Aligned_cols=74 Identities=19% Similarity=0.420 Sum_probs=60.3
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+++ ++|+||++||++|+.+.|.|.++.+++.. +..++.|++|.+.- + ...+++.|+|
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~-------------------d-~~~l~~~~~I 70 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDV-------------------D-REKAVKLFDI 70 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCcccc-------------------c-cHHHHHHCCC
Confidence 566 99999999999999999999999887543 36688888876520 0 1268899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++||++++ ++|+.+.+
T Consensus 71 ~~iPT~i~f-k~G~~v~~ 87 (103)
T PHA02278 71 MSTPVLIGY-KDGQLVKK 87 (103)
T ss_pred ccccEEEEE-ECCEEEEE
Confidence 999999999 78988864
No 140
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.36 E-value=2.3e-12 Score=97.25 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=64.8
Q ss_pred CCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhh
Q 018808 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSET 105 (350)
Q Consensus 27 ~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (350)
+++.++.....++ ++|.||++||++|+.+.|.+.++.++++. .+.++.|+++...
T Consensus 7 ~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~---------------------- 62 (101)
T cd03003 7 DRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDR---------------------- 62 (101)
T ss_pred CHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccH----------------------
Confidence 4444444344567 99999999999999999999999999965 4889999988654
Q ss_pred HHHHHhhcCCCCcceEEEECCCCeEEe
Q 018808 106 RDKLDELFKVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 106 ~~~l~~~~~v~~~P~~~lid~~G~v~~ 132 (350)
.+++.|++.++|+++++ ++|+.+.
T Consensus 63 --~~~~~~~v~~~Pt~~~~-~~g~~~~ 86 (101)
T cd03003 63 --MLCRSQGVNSYPSLYVF-PSGMNPE 86 (101)
T ss_pred --HHHHHcCCCccCEEEEE-cCCCCcc
Confidence 68999999999999999 7886543
No 141
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.36 E-value=5.4e-12 Score=94.49 Aligned_cols=75 Identities=16% Similarity=0.305 Sum_probs=65.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++++||++||+.|+.+.|.+.++.+++.+. +.++.|+.|.. .++.+++++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~-----------------------~~l~~~~~v 65 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDED-----------------------QEIAEAAGI 65 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCC-----------------------HHHHHHCCC
Confidence 4689999999999999999999999999998753 88888887743 457899999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++|+++++ ++|+++.+..|.
T Consensus 66 ~~vPt~~i~-~~g~~v~~~~g~ 86 (97)
T cd02949 66 MGTPTVQFF-KDKELVKEISGV 86 (97)
T ss_pred eeccEEEEE-ECCeEEEEEeCC
Confidence 999999999 689999888773
No 142
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.36 E-value=5.9e-12 Score=96.25 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=62.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCC---CcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKG---ESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~---~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
.+++++|.||++||++|+.+.|.+.++++++++.. .++.+..|++|.. .+++++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-----------------------~~l~~~ 73 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-----------------------SDIADR 73 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-----------------------HHHHHh
Confidence 35789999999999999999999999998875421 1378888888754 458999
Q ss_pred cCCCCccEEEEECCCCCEE-eccch
Q 018808 273 FELSTLPTLVIIGPDGKTL-HSNVA 296 (350)
Q Consensus 273 ~~v~~~P~~~lid~~G~i~-~~~~~ 296 (350)
|+|.++|+++++ ++|++. ..+.|
T Consensus 74 ~~v~~~Ptl~~~-~~g~~~~~~~~g 97 (108)
T cd02996 74 YRINKYPTLKLF-RNGMMMKREYRG 97 (108)
T ss_pred CCCCcCCEEEEE-eCCcCcceecCC
Confidence 999999999999 889843 44444
No 143
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.36 E-value=3.7e-12 Score=97.48 Aligned_cols=69 Identities=16% Similarity=0.307 Sum_probs=59.3
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|.||++||++|+.+.|.+.++++++.+. +.++.|+++.+. ..++++.|++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~---------------------~~~~~~~~~i 72 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDK---------------------NKPLCGKYGV 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCccc---------------------cHHHHHHcCC
Confidence 3678999999999999999999999999998754 889999887521 1568899999
Q ss_pred CCccEEEEECCCC
Q 018808 276 STLPTLVIIGPDG 288 (350)
Q Consensus 276 ~~~P~~~lid~~G 288 (350)
.++|+++++++.+
T Consensus 73 ~~~Pt~~~~~~~~ 85 (109)
T cd03002 73 QGFPTLKVFRPPK 85 (109)
T ss_pred CcCCEEEEEeCCC
Confidence 9999999997766
No 144
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.36 E-value=5.2e-12 Score=95.44 Aligned_cols=70 Identities=17% Similarity=0.383 Sum_probs=59.7
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.|+ ++|+||++||++|+.+.|.|.++++++++. .+.++.++.| .. .+++.|++
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~-~~~~~~vd~d-~~------------------------~~~~~~~v 69 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD-LLHFATAEAD-TI------------------------DTLKRYRG 69 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC-cEEEEEEeCC-CH------------------------HHHHHcCC
Confidence 467 999999999999999999999999998754 3778888877 32 57889999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+.+.+
T Consensus 70 ~~~Pt~~~~-~~g~~~~~ 86 (102)
T cd02948 70 KCEPTFLFY-KNGELVAV 86 (102)
T ss_pred CcCcEEEEE-ECCEEEEE
Confidence 999999888 68988764
No 145
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.5e-12 Score=100.58 Aligned_cols=67 Identities=31% Similarity=0.727 Sum_probs=61.2
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
|+|+|||+||.+|+.+.|.|+++..+|.. .+++..|+.|... +++..|+|..+|
T Consensus 64 VlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~------------------------ela~~Y~I~avP 117 (150)
T KOG0910|consen 64 VLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHP------------------------ELAEDYEISAVP 117 (150)
T ss_pred EEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEcccccc------------------------chHhhcceeeee
Confidence 99999999999999999999999999954 5999999998776 699999999999
Q ss_pred eEEEECCCCeEEec
Q 018808 120 HLVILDENGKVLSD 133 (350)
Q Consensus 120 ~~~lid~~G~v~~~ 133 (350)
+++++ ++|+.+.+
T Consensus 118 tvlvf-knGe~~d~ 130 (150)
T KOG0910|consen 118 TVLVF-KNGEKVDR 130 (150)
T ss_pred EEEEE-ECCEEeee
Confidence 99999 79988753
No 146
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.35 E-value=5.2e-12 Score=102.81 Aligned_cols=115 Identities=20% Similarity=0.257 Sum_probs=89.5
Q ss_pred hcCccCCceec-cC---CceeecCC-CCCc--EEEEEecCCChhhhhh-hHHHHHHHHHhccCCCE-EEEEEECCCCHHH
Q 018808 15 LSSSARDFLIR-SN---GDQVKLDS-LKGK--IGLYFSASWCGPCQRF-TPILAEVYNELSRQGDF-EVIFVSGDEDDEA 85 (350)
Q Consensus 15 ~g~~~p~f~~~-~~---g~~~~l~~-~~gk--~~v~F~~~~C~~C~~~-~~~l~~l~~~~~~~~~~-~~v~i~~d~~~~~ 85 (350)
+|+.+|+|++. .+ |+.++|++ ++|+ ++++|...|||.|..+ ++.|.+.+++|.+.+ . .+++|+.|+. ..
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g-~~~V~~iS~D~~-~~ 78 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG-VDEVICVSVNDP-FV 78 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC-CCEEEEEECCCH-HH
Confidence 58999999884 43 89999999 5887 5555567899999998 999999999998876 6 6999998755 45
Q ss_pred HHhHHhcCCC-cccccCChhhHHHHHhhcCCC-----------CcceEEEECCCCeEEec
Q 018808 86 FKGYFSKMPW-LAVPFSDSETRDKLDELFKVM-----------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 86 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~ 133 (350)
.++|.+..+. ..++.. .|...++++.||+. ....++||| +|+|++.
T Consensus 79 ~~~~~~~~~~~~~f~lL-sD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~ 136 (155)
T cd03013 79 MKAWGKALGAKDKIRFL-ADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYL 136 (155)
T ss_pred HHHHHHhhCCCCcEEEE-ECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEE
Confidence 7778877775 345533 33446999999983 135779998 7999875
No 147
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.9e-11 Score=95.19 Aligned_cols=116 Identities=22% Similarity=0.276 Sum_probs=94.4
Q ss_pred CCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-------CHHHHHHh
Q 018808 179 RDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEESFKRD 250 (350)
Q Consensus 179 p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~ 250 (350)
-+| ..+.+|+.+++++++||++||...|+.|+.-. ....|+.+|++|+++| ++|+++.+++ +.++..+|
T Consensus 6 yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~~f 82 (162)
T COG0386 6 YDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIAKF 82 (162)
T ss_pred ccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHHHH
Confidence 356 67899999999999999999999999999887 5567999999999999 9999999973 78999999
Q ss_pred hcCCCCccccCCchhH----------HHHHHHc-------CCCCccEEEEECCCCCEEeccchh
Q 018808 251 LGSMPWLALPFKDKSR----------EKLARYF-------ELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~~----------~~~~~~~-------~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+.....++||+....+ +-|...- .|..--+-||||++|+|+.|+...
T Consensus 83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~ 146 (162)
T COG0386 83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPK 146 (162)
T ss_pred HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCC
Confidence 9977678888874221 2232222 134455889999999999998774
No 148
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.35 E-value=7.2e-12 Score=93.58 Aligned_cols=69 Identities=19% Similarity=0.365 Sum_probs=60.4
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+|+ ++|+||++||++|+.+.|.+.++++.+.. .+.++.|+++... .+++.|++
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~------------------------~l~~~~~i 64 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQP------------------------QIAQQFGV 64 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCH------------------------HHHHHcCC
Confidence 477 99999999999999999999999999865 4788888887654 68999999
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
.++|++++++ +|+.+.
T Consensus 65 ~~~Pt~~~~~-~g~~~~ 80 (96)
T cd02956 65 QALPTVYLFA-AGQPVD 80 (96)
T ss_pred CCCCEEEEEe-CCEEee
Confidence 9999999995 888765
No 149
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.34 E-value=5.4e-12 Score=96.89 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=61.9
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
..|+ ++|+||++||++|+.+.|.+.++.++++.. ++.++.|+++... .++..|+
T Consensus 22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~------------------------~l~~~~~ 76 (111)
T cd02963 22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHER------------------------RLARKLG 76 (111)
T ss_pred cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccH------------------------HHHHHcC
Confidence 4678 999999999999999999999999999754 4888888877553 6888999
Q ss_pred CCCcceEEEECCCCeEEec
Q 018808 115 VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 115 v~~~P~~~lid~~G~v~~~ 133 (350)
|.++|+++++ ++|+++.+
T Consensus 77 V~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 77 AHSVPAIVGI-INGQVTFY 94 (111)
T ss_pred CccCCEEEEE-ECCEEEEE
Confidence 9999999999 68887654
No 150
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.34 E-value=9.2e-12 Score=95.97 Aligned_cols=72 Identities=14% Similarity=0.214 Sum_probs=61.5
Q ss_pred CEEEEEEeccCCcc--Ch--hhHHHHHHHHHHHh-cCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 198 KTIGLYFSMSSYKA--SA--EFTPRLVEVYEKLK-GKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 198 k~vlv~f~~~~C~~--C~--~~~~~l~~~~~~~~-~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
.++|++||+.||+| |+ .+.|.+.+++.++- ..+ +.++.|++|.. .+++++
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~--v~~~kVD~d~~-----------------------~~La~~ 82 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKG--IGFGLVDSKKD-----------------------AKVAKK 82 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCC--CEEEEEeCCCC-----------------------HHHHHH
Confidence 58999999999998 99 77888889888873 223 99999999865 569999
Q ss_pred cCCCCccEEEEECCCCCEEeccch
Q 018808 273 FELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 273 ~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
|||.++||++++ ++|+++. +.|
T Consensus 83 ~~I~~iPTl~lf-k~G~~v~-~~G 104 (120)
T cd03065 83 LGLDEEDSIYVF-KDDEVIE-YDG 104 (120)
T ss_pred cCCccccEEEEE-ECCEEEE-eeC
Confidence 999999999999 8999887 666
No 151
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.34 E-value=4.9e-12 Score=96.82 Aligned_cols=77 Identities=14% Similarity=0.247 Sum_probs=62.9
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH-HcC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR-YFE 274 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 274 (350)
++|+++|.||++||++|+.+.|.+.++++++++.+ +.++.|++|.+. ..+++ .|+
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~--~~~~~vd~d~~~----------------------~~~~~~~~~ 75 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSN--VKVAKFNADGEQ----------------------REFAKEELQ 75 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECCccc----------------------hhhHHhhcC
Confidence 46899999999999999999999999999998655 999999887421 23444 599
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+..+|++++++++++....+.|
T Consensus 76 v~~~Pti~~f~~~~~~~~~y~g 97 (109)
T cd02993 76 LKSFPTILFFPKNSRQPIKYPS 97 (109)
T ss_pred CCcCCEEEEEcCCCCCceeccC
Confidence 9999999999887765555554
No 152
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.33 E-value=2.4e-12 Score=99.50 Aligned_cols=78 Identities=21% Similarity=0.355 Sum_probs=57.6
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
..++|+|+|+||++||++|+.+.|.+.+........ ..++.|.+|.+.+ ...+.|
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~---~~fv~v~vd~~~~----------------------~~~~~~ 70 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELS---HNFVMVNLEDDEE----------------------PKDEEF 70 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc---CcEEEEEecCCCC----------------------chhhhc
Confidence 346899999999999999999999998876654322 3466666663321 123467
Q ss_pred CCCC--ccEEEEECCCCCEEeccch
Q 018808 274 ELST--LPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 274 ~v~~--~P~~~lid~~G~i~~~~~~ 296 (350)
++.+ +|+++++|++|+++.+..+
T Consensus 71 ~~~g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 71 SPDGGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred ccCCCccceEEEECCCCCCchhhcc
Confidence 7765 9999999999999876443
No 153
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.32 E-value=1.6e-11 Score=98.83 Aligned_cols=72 Identities=19% Similarity=0.406 Sum_probs=61.5
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.+.++.++++.. ++.++.|+++... .+++.|+|
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~-~v~f~~VDvd~~~------------------------~la~~~~V 100 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNN-NLKFGKIDIGRFP------------------------NVAEKFRV 100 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccC-CeEEEEEECCCCH------------------------HHHHHcCc
Confidence 356 999999999999999999999999998754 4999999988765 57777887
Q ss_pred CC------cceEEEECCCCeEEecC
Q 018808 116 MG------IPHLVILDENGKVLSDG 134 (350)
Q Consensus 116 ~~------~P~~~lid~~G~v~~~~ 134 (350)
.+ +||++++ ++|+.+.+.
T Consensus 101 ~~~~~v~~~PT~ilf-~~Gk~v~r~ 124 (152)
T cd02962 101 STSPLSKQLPTIILF-QGGKEVARR 124 (152)
T ss_pred eecCCcCCCCEEEEE-ECCEEEEEE
Confidence 76 9999999 699888764
No 154
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.32 E-value=7.7e-12 Score=95.70 Aligned_cols=79 Identities=10% Similarity=0.043 Sum_probs=62.7
Q ss_pred ccCCceeecC---CCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCccccc
Q 018808 25 RSNGDQVKLD---SLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPF 100 (350)
Q Consensus 25 ~~~g~~~~l~---~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~ 100 (350)
+++.++++-. .-.++ ++|.||++||++|+.+.|.+.++.+++++ .+.++.|+++...
T Consensus 13 ~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~----------------- 73 (113)
T cd03006 13 DFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQ----------------- 73 (113)
T ss_pred EechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCCh-----------------
Confidence 3455554433 23445 99999999999999999999999999965 4888999887664
Q ss_pred CChhhHHHHH-hhcCCCCcceEEEECCCCeE
Q 018808 101 SDSETRDKLD-ELFKVMGIPHLVILDENGKV 130 (350)
Q Consensus 101 ~~~~~~~~l~-~~~~v~~~P~~~lid~~G~v 130 (350)
.++ +.|+|.++||+.++ ++|+.
T Consensus 74 -------~l~~~~~~I~~~PTl~lf-~~g~~ 96 (113)
T cd03006 74 -------GKCRKQKHFFYFPVIHLY-YRSRG 96 (113)
T ss_pred -------HHHHHhcCCcccCEEEEE-ECCcc
Confidence 567 58999999999999 67763
No 155
>PTZ00051 thioredoxin; Provisional
Probab=99.31 E-value=8.9e-12 Score=93.44 Aligned_cols=74 Identities=12% Similarity=0.246 Sum_probs=62.8
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.++.++|+||++||++|+.+.+.+.++++++.+ +.++.|+.+.. ..+.++|++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~----~~~~~vd~~~~-----------------------~~~~~~~~v 69 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK----MVFVKVDVDEL-----------------------SEVAEKENI 69 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC----cEEEEEECcch-----------------------HHHHHHCCC
Confidence 367999999999999999999999999887643 77777776532 458899999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
.++|+++++ ++|+++.+..|.
T Consensus 70 ~~~Pt~~~~-~~g~~~~~~~G~ 90 (98)
T PTZ00051 70 TSMPTFKVF-KNGSVVDTLLGA 90 (98)
T ss_pred ceeeEEEEE-eCCeEEEEEeCC
Confidence 999998888 899999998884
No 156
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.30 E-value=1.2e-11 Score=92.44 Aligned_cols=74 Identities=16% Similarity=0.245 Sum_probs=62.4
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|+||++||++|+.+.+.|.++.+++.. ++.++.|+.+.. .++.++|++.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~~-----------------------~~~~~~~~i~ 67 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEEL-----------------------PEISEKFEIT 67 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEccccC-----------------------HHHHHhcCCc
Confidence 68999999999999999999999999988732 277877765432 4588999999
Q ss_pred CccEEEEECCCCCEEeccchh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~ 297 (350)
++|+++++ .+|+++.+..|.
T Consensus 68 ~~Pt~~~~-~~g~~~~~~~g~ 87 (97)
T cd02984 68 AVPTFVFF-RNGTIVDRVSGA 87 (97)
T ss_pred cccEEEEE-ECCEEEEEEeCC
Confidence 99999999 689999887773
No 157
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.30 E-value=1.5e-11 Score=94.62 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=64.6
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.+++++|.||++||++|+.+.|.|.++.+++++ +.++.|+.+.. .+++++|+|
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~~~-----------------------~~l~~~~~v 73 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAEKA-----------------------PFLVEKLNI 73 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcccC-----------------------HHHHHHCCC
Confidence 357899999999999999999999999988753 78888888754 458999999
Q ss_pred CCccEEEEECCCCCEEeccchh
Q 018808 276 STLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~ 297 (350)
..+|+++++ ++|+++.+..|.
T Consensus 74 ~~vPt~l~f-k~G~~v~~~~g~ 94 (113)
T cd02989 74 KVLPTVILF-KNGKTVDRIVGF 94 (113)
T ss_pred ccCCEEEEE-ECCEEEEEEECc
Confidence 999999999 899999887764
No 158
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.30 E-value=1.6e-11 Score=94.59 Aligned_cols=72 Identities=21% Similarity=0.359 Sum_probs=62.6
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|.||++||++|+.+.|.+.++.+++.+ +.++.|+.+.. +++++|+|.
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~~~~------------------------~l~~~~~i~ 75 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINAEKA------------------------FLVNYLDIK 75 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEchhh------------------------HHHHhcCCC
Confidence 57999999999999999999999999998853 77887776621 578999999
Q ss_pred CccEEEEECCCCCEEeccchh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~ 297 (350)
++|+++++ ++|+++.+..|.
T Consensus 76 ~~Pt~~~f-~~G~~v~~~~G~ 95 (113)
T cd02957 76 VLPTLLVY-KNGELIDNIVGF 95 (113)
T ss_pred cCCEEEEE-ECCEEEEEEecH
Confidence 99999999 899999988774
No 159
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.29 E-value=2.3e-11 Score=92.10 Aligned_cols=78 Identities=14% Similarity=0.252 Sum_probs=62.9
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++++++|.||++||++|+.+.|.+.++.+.+...+ .+.++.++++.+ ....+.++|++
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~---------------------~~~~~~~~~~i 73 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDG-KGVLAAVDCTKP---------------------EHDALKEEYNV 73 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCC-ceEEEEEECCCC---------------------ccHHHHHhCCC
Confidence 45789999999999999999999999999987532 367777776632 12558899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++ ++|+++.+..|
T Consensus 74 ~~~Pt~~~~-~~g~~~~~~~g 93 (104)
T cd02997 74 KGFPTFKYF-ENGKFVEKYEG 93 (104)
T ss_pred ccccEEEEE-eCCCeeEEeCC
Confidence 999998877 78998877766
No 160
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.27 E-value=4.5e-11 Score=89.89 Aligned_cols=73 Identities=22% Similarity=0.421 Sum_probs=63.4
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|+||++||++|+.+.+.+.++.+++.+. +.++.|..+.+ .++.++|++.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v~ 67 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDEN-----------------------PDIAAKYGIR 67 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCC-----------------------HHHHHHcCCC
Confidence 469999999999999999999999999888654 88999987744 4578899999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
.+|+++++ ++|+++.+..|
T Consensus 68 ~~P~~~~~-~~g~~~~~~~g 86 (101)
T TIGR01068 68 SIPTLLLF-KNGKEVDRSVG 86 (101)
T ss_pred cCCEEEEE-eCCcEeeeecC
Confidence 99999999 78988877666
No 161
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.27 E-value=3.8e-11 Score=90.69 Aligned_cols=73 Identities=18% Similarity=0.415 Sum_probs=65.5
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|.||++||++|+.+.|.+.++.+++.+ + +.++.|+++.. ..++++|++.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~--v~~~~vd~~~~-----------------------~~l~~~~~v~ 70 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-N--VKFAKVDCDEN-----------------------KELCKKYGVK 70 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-T--SEEEEEETTTS-----------------------HHHHHHTTCS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc-c--cccchhhhhcc-----------------------chhhhccCCC
Confidence 68999999999999999999999999999987 3 88999988744 5589999999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
++|+++++ .+|+...+..|
T Consensus 71 ~~Pt~~~~-~~g~~~~~~~g 89 (103)
T PF00085_consen 71 SVPTIIFF-KNGKEVKRYNG 89 (103)
T ss_dssp SSSEEEEE-ETTEEEEEEES
T ss_pred CCCEEEEE-ECCcEEEEEEC
Confidence 99999999 88888887777
No 162
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.27 E-value=2.6e-11 Score=103.77 Aligned_cols=73 Identities=18% Similarity=0.263 Sum_probs=61.8
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|+||++||++|+.+.|.++++++++++. +.+..|+++.. .++.++|+|.
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~~-----------------------~~l~~~~~I~ 105 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATRA-----------------------LNLAKRFAIK 105 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCccc-----------------------HHHHHHcCCC
Confidence 578999999999999999999999999999754 77777766532 4588999999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
++|++++++ +|+++....|
T Consensus 106 ~~PTl~~f~-~G~~v~~~~G 124 (224)
T PTZ00443 106 GYPTLLLFD-KGKMYQYEGG 124 (224)
T ss_pred cCCEEEEEE-CCEEEEeeCC
Confidence 999999995 8988876555
No 163
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.27 E-value=5.6e-11 Score=98.66 Aligned_cols=118 Identities=25% Similarity=0.501 Sum_probs=90.5
Q ss_pred hcCccCCcee-ccCCceeecCCCCCc-EEEEEecCCCh-hhhhhhHHHHHHHHHhccCC-CEEEEEEECCC---CHHHHH
Q 018808 15 LSSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG-DFEVIFVSGDE---DDEAFK 87 (350)
Q Consensus 15 ~g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~-~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~---~~~~~~ 87 (350)
.....|+|++ +.+|+++++++++|| ++|+|..+.|| .|...+..|.++++++.+++ +++++.|++|. +++..+
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~ 107 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLK 107 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHH
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHH
Confidence 5667889977 789999999999999 99999999997 79999999999999998754 79999999985 456678
Q ss_pred hHHhcCC--CcccccCChhhHHHHHhhcCCC----------------CcceEEEECCCCeEEec
Q 018808 88 GYFSKMP--WLAVPFSDSETRDKLDELFKVM----------------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 88 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~----------------~~P~~~lid~~G~v~~~ 133 (350)
+|.+.++ |.... .+.+..+++++.|++. +...++|+|++|+++..
T Consensus 108 ~Y~~~~~~~~~~lt-g~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~ 170 (174)
T PF02630_consen 108 KYAKKFGPDFIGLT-GSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI 170 (174)
T ss_dssp HHHHCHTTTCEEEE-EEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred HHHHhcCCCcceeE-eCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence 8877653 32222 2344456788888753 34589999999999864
No 164
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.26 E-value=4.3e-11 Score=92.26 Aligned_cols=71 Identities=21% Similarity=0.234 Sum_probs=57.3
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|.||++||++|+.+.|.+.++++++++....+.+..|+++.+. ..++.+.|++.
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~---------------------~~~~~~~~~i~ 77 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE---------------------NVALCRDFGVT 77 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh---------------------hHHHHHhCCCC
Confidence 369999999999999999999999999998754334777777765321 25688999999
Q ss_pred CccEEEEECCCCC
Q 018808 277 TLPTLVIIGPDGK 289 (350)
Q Consensus 277 ~~P~~~lid~~G~ 289 (350)
++|+++++ ++|+
T Consensus 78 ~~Pt~~lf-~~~~ 89 (114)
T cd02992 78 GYPTLRYF-PPFS 89 (114)
T ss_pred CCCEEEEE-CCCC
Confidence 99999999 5555
No 165
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.26 E-value=3.2e-11 Score=90.95 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=62.7
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++++++|.||++||+.|+.+.+.++++++.+...+ ++.++.++++.. ..+.++|++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~-----------------------~~~~~~~~i 67 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATAE-----------------------KDLASRFGV 67 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccch-----------------------HHHHHhCCC
Confidence 67899999999999999999999999999987642 377777776532 568899999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.++|+++++++++. +.++.|
T Consensus 68 ~~~P~~~~~~~~~~-~~~~~g 87 (102)
T TIGR01126 68 SGFPTIKFFPKGKK-PVDYEG 87 (102)
T ss_pred CcCCEEEEecCCCc-ceeecC
Confidence 99999999987776 555555
No 166
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.25 E-value=3.5e-11 Score=91.23 Aligned_cols=70 Identities=23% Similarity=0.396 Sum_probs=58.9
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.+.++.+++.. .+.++.|+++... .+++.|++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~i 71 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYE------------------------SLCQQANI 71 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchH------------------------HHHHHcCC
Confidence 456 99999999999999999999999999854 4888888887553 68999999
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
.++|+++++.+.|+.+.
T Consensus 72 ~~~Pt~~~~~~g~~~~~ 88 (104)
T cd03004 72 RAYPTIRLYPGNASKYH 88 (104)
T ss_pred CcccEEEEEcCCCCCce
Confidence 99999999965535443
No 167
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.25 E-value=2.3e-10 Score=110.18 Aligned_cols=179 Identities=16% Similarity=0.148 Sum_probs=109.9
Q ss_pred CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC--CcceEEEEC
Q 018808 48 WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM--GIPHLVILD 125 (350)
Q Consensus 48 ~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~~lid 125 (350)
....|......+.++.++++.. .+.++.+.. +....+++.+++. ..|.+++++
T Consensus 246 ~~~~~~~~~~~~~~~a~~~~~~-~i~f~~~d~------------------------~~~~~~~~~~~~~~~~~P~~vi~~ 300 (462)
T TIGR01130 246 SLDPFEELRNRFLEAAKKFRGK-FVNFAVADE------------------------EDFGRELEYFGLKAEKFPAVAIQD 300 (462)
T ss_pred CchHHHHHHHHHHHHHHHCCCC-eEEEEEecH------------------------HHhHHHHHHcCCCccCCceEEEEe
Confidence 4445677777777777777531 244444432 2234688889887 699999999
Q ss_pred CCCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCC----ceecCCCceeeccc-cCCCEE
Q 018808 126 ENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRD----FVISSDGRKISVSD-LEGKTI 200 (350)
Q Consensus 126 ~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~----f~~~~~g~~v~l~~-~~gk~v 200 (350)
.+|...+.. . ....+.+.+.+++........... ....+.|. -+....|..+...- -.++.+
T Consensus 301 ~~~~~~y~~--------~--~~~~~~~~i~~fi~~~~~g~~~~~---~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~v 367 (462)
T TIGR01130 301 LEGNKKYPM--------D--QEEFSSENLEAFVKDFLDGKLKPY---LKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDV 367 (462)
T ss_pred CCcccccCC--------C--cCCCCHHHHHHHHHHHhcCCCCee---eccCCCCccCCCccEEeeCcCHHHHhccCCCeE
Confidence 887322211 0 012456677777665432211111 11122222 12223333332211 147899
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
+|+||++||++|+.+.|.+.++++.+++...++.++.|+++.+ ++.. +++.++|+
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n------------------------~~~~-~~i~~~Pt 422 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN------------------------DVPP-FEVEGFPT 422 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC------------------------ccCC-CCccccCE
Confidence 9999999999999999999999999987312388988887643 1223 88999999
Q ss_pred EEEECCCCC
Q 018808 281 LVIIGPDGK 289 (350)
Q Consensus 281 ~~lid~~G~ 289 (350)
++++.+.++
T Consensus 423 ~~~~~~~~~ 431 (462)
T TIGR01130 423 IKFVPAGKK 431 (462)
T ss_pred EEEEeCCCC
Confidence 999955444
No 168
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.24 E-value=1.3e-10 Score=88.17 Aligned_cols=68 Identities=28% Similarity=0.504 Sum_probs=55.8
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
+++ ++|+||++||++|+.+.|.|.++++.++.++ .+.+..++++... .+++.|+
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~------------------------~~~~~~~ 69 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS------------------------SIASEFG 69 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH------------------------hHHhhcC
Confidence 345 9999999999999999999999999996543 4777777765432 6788999
Q ss_pred CCCcceEEEECCCCe
Q 018808 115 VMGIPHLVILDENGK 129 (350)
Q Consensus 115 v~~~P~~~lid~~G~ 129 (350)
+.++|++++++ +|.
T Consensus 70 I~~~Pt~~l~~-~~~ 83 (104)
T cd03000 70 VRGYPTIKLLK-GDL 83 (104)
T ss_pred CccccEEEEEc-CCC
Confidence 99999999994 443
No 169
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.24 E-value=3.6e-11 Score=91.19 Aligned_cols=75 Identities=23% Similarity=0.392 Sum_probs=60.3
Q ss_pred CCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhh
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (350)
.|+ ++|+||++||++|+.+.+.+ .++.+.+++ ++.++.|+++.+.+ ....+++.
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~--------------------~~~~~~~~ 67 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDP--------------------EITALLKR 67 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCH--------------------HHHHHHHH
Confidence 567 99999999999999999887 577777765 48888888765421 12478899
Q ss_pred cCCCCcceEEEECC-CCeEEec
Q 018808 113 FKVMGIPHLVILDE-NGKVLSD 133 (350)
Q Consensus 113 ~~v~~~P~~~lid~-~G~v~~~ 133 (350)
|++.++|+++++++ +|+++.+
T Consensus 68 ~~i~~~Pti~~~~~~~g~~~~~ 89 (104)
T cd02953 68 FGVFGPPTYLFYGPGGEPEPLR 89 (104)
T ss_pred cCCCCCCEEEEECCCCCCCCcc
Confidence 99999999999988 8886653
No 170
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.24 E-value=4.1e-11 Score=93.23 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=60.4
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCc-hhHHHHHHHc-
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKD-KSREKLARYF- 273 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 273 (350)
.|+.++|+|+++|||+|+.+.|.|.++.++.+ +.+..|++|.+.. ..... ..-.++.+.|
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~-----~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQTK-----APIYYIDSENNGS-------------FEMSSLNDLTAFRSRFG 83 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhcC-----CcEEEEECCCccC-------------cCcccHHHHHHHHHHcC
Confidence 35789999999999999999999999988732 6688888874321 00000 0113445555
Q ss_pred ---CCCCccEEEEECCCCCEEeccchh
Q 018808 274 ---ELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 274 ---~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
++.++||++++ ++|+.+.+..|.
T Consensus 84 i~~~i~~~PT~v~~-k~Gk~v~~~~G~ 109 (122)
T TIGR01295 84 IPTSFMGTPTFVHI-TDGKQVSVRCGS 109 (122)
T ss_pred CcccCCCCCEEEEE-eCCeEEEEEeCC
Confidence 45679999999 999999998773
No 171
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.24 E-value=2.6e-11 Score=92.67 Aligned_cols=69 Identities=22% Similarity=0.461 Sum_probs=58.2
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccC----CCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ----GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~----~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
.++ ++|+||++||++|+.+.|.+.++++++++. +++.++.|+++... .+++
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~------------------------~l~~ 72 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES------------------------DIAD 72 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH------------------------HHHH
Confidence 456 999999999999999999999999887532 24788888887654 6899
Q ss_pred hcCCCCcceEEEECCCCeE
Q 018808 112 LFKVMGIPHLVILDENGKV 130 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~v 130 (350)
.|+++++|+++++ ++|++
T Consensus 73 ~~~v~~~Ptl~~~-~~g~~ 90 (108)
T cd02996 73 RYRINKYPTLKLF-RNGMM 90 (108)
T ss_pred hCCCCcCCEEEEE-eCCcC
Confidence 9999999999999 78873
No 172
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.24 E-value=1.2e-11 Score=109.68 Aligned_cols=87 Identities=21% Similarity=0.297 Sum_probs=69.7
Q ss_pred CCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhh
Q 018808 27 NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSET 105 (350)
Q Consensus 27 ~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (350)
..+..+++++.|+ ++|+||++||++|+.+.|.|.+++++++ +.++.|++|.... ..++..+.+
T Consensus 155 ~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~~~~-----------~~fp~~~~d- 218 (271)
T TIGR02740 155 KQKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG----IEVLPVSVDGGPL-----------PGFPNARPD- 218 (271)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC----cEEEEEeCCCCcc-----------ccCCcccCC-
Confidence 4455888899999 9999999999999999999999999983 7899999887642 123333322
Q ss_pred HHHHHhhcCCCCcceEEEECCCCeE
Q 018808 106 RDKLDELFKVMGIPHLVILDENGKV 130 (350)
Q Consensus 106 ~~~l~~~~~v~~~P~~~lid~~G~v 130 (350)
..+++.|+|.++|+++|+|++|..
T Consensus 219 -~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 219 -AGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred -HHHHHHcCCCcCCeEEEEECCCCE
Confidence 357889999999999999986543
No 173
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.5e-11 Score=91.41 Aligned_cols=68 Identities=25% Similarity=0.575 Sum_probs=60.0
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.+| ++|+|+++||++|+.+.|.+.+|..+|++ +.|+.+++|.. ..+++.|++
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~---v~Flkvdvde~------------------------~~~~~~~~V 72 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD---VVFLKVDVDEL------------------------EEVAKEFNV 72 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC---CEEEEEecccC------------------------HhHHHhcCc
Confidence 457 99999999999999999999999999974 78888988872 278999999
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
..+||++++ ++|+.+.
T Consensus 73 ~~~PTf~f~-k~g~~~~ 88 (106)
T KOG0907|consen 73 KAMPTFVFY-KGGEEVD 88 (106)
T ss_pred eEeeEEEEE-ECCEEEE
Confidence 999999999 7887665
No 174
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=4.3e-11 Score=103.69 Aligned_cols=90 Identities=22% Similarity=0.485 Sum_probs=73.1
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+.+ |+|+||++||++|+.+.|.|..+...|+. .+.++.|++|.++ .++..|||
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p------------------------~vAaqfgi 95 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEP------------------------MVAAQFGV 95 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcch------------------------hHHHHhCc
Confidence 445 99999999999999999999999999965 5899999998876 69999999
Q ss_pred CCcceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHHHHHH
Q 018808 116 MGIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERA 164 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~ 164 (350)
.++|++|++ .+|+.+.. .. .+.....+.+++++....
T Consensus 96 qsIPtV~af-~dGqpVdg--------F~---G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 96 QSIPTVYAF-KDGQPVDG--------FQ---GAQPESQLRQFLDKVLPA 132 (304)
T ss_pred CcCCeEEEe-eCCcCccc--------cC---CCCcHHHHHHHHHHhcCh
Confidence 999999999 89987752 11 123556777777654433
No 175
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.23 E-value=6.3e-11 Score=93.05 Aligned_cols=85 Identities=24% Similarity=0.408 Sum_probs=62.8
Q ss_pred CCC-c-EEEEEecCCChhhhhhhHHHH---HHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHH
Q 018808 36 LKG-K-IGLYFSASWCGPCQRFTPILA---EVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (350)
Q Consensus 36 ~~g-k-~~v~F~~~~C~~C~~~~~~l~---~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (350)
-.| | ++|+||++||++|+.+.+.+. ++.+.+.+ ++.++.|+++.+.... .+ ... ......++
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~-~~---------~~~-~~~~~~l~ 77 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVT-DF---------DGE-ALSEKELA 77 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceee-cc---------CCC-CccHHHHH
Confidence 367 8 999999999999999999874 56666654 4888888887653211 11 100 11345889
Q ss_pred hhcCCCCcceEEEECCC-CeEEec
Q 018808 111 ELFKVMGIPHLVILDEN-GKVLSD 133 (350)
Q Consensus 111 ~~~~v~~~P~~~lid~~-G~v~~~ 133 (350)
..|++.++|++++++++ |+++.+
T Consensus 78 ~~~~v~~~Pt~~~~~~~gg~~~~~ 101 (125)
T cd02951 78 RKYRVRFTPTVIFLDPEGGKEIAR 101 (125)
T ss_pred HHcCCccccEEEEEcCCCCceeEE
Confidence 99999999999999999 788764
No 176
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=99.23 E-value=4.3e-10 Score=94.94 Aligned_cols=117 Identities=19% Similarity=0.330 Sum_probs=97.1
Q ss_pred Cc-eecCCCceeeccccCCCEEEEEEeccCCc-cChhhHHHHHHHHHHHhcCC-CcEEEEEEeCC---CCHHHHHHhhcC
Q 018808 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYK-ASAEFTPRLVEVYEKLKGKG-ESFEIVLISLD---DEEESFKRDLGS 253 (350)
Q Consensus 180 ~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~-~C~~~~~~l~~~~~~~~~~~-~~~~vv~v~~d---~~~~~~~~~~~~ 253 (350)
.| +.+.+|+.++-.++.||++||+|..+.|| .|..++..|.++.+++.+.. ..+.-|+|++| ++.+.+.+|+++
T Consensus 121 pF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~e 200 (280)
T KOG2792|consen 121 PFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSE 200 (280)
T ss_pred ceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHh
Confidence 46 78999999999999999999999999999 79999999999999888663 33447889998 589999999998
Q ss_pred CC--CccccCCchhHHHHHHHcCCCCc--c-------------EEEEECCCCCEEeccch
Q 018808 254 MP--WLALPFKDKSREKLARYFELSTL--P-------------TLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 254 ~~--~~~~~~~~~~~~~~~~~~~v~~~--P-------------~~~lid~~G~i~~~~~~ 296 (350)
+. .+-++...+.-.++++.|.|.-- | .+|||||+|+.+..+..
T Consensus 201 F~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~Gr 260 (280)
T KOG2792|consen 201 FHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGR 260 (280)
T ss_pred cChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcc
Confidence 74 45566777777889999988422 3 46899999999977654
No 177
>PRK09381 trxA thioredoxin; Provisional
Probab=99.23 E-value=4.5e-11 Score=91.50 Aligned_cols=69 Identities=32% Similarity=0.648 Sum_probs=60.3
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|+||++||++|+.+.|.|.++.++++. .+.+..++++... .+++.|++.
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~ 74 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNP------------------------GTAPKYGIR 74 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCCh------------------------hHHHhCCCC
Confidence 56 99999999999999999999999999975 4888899887654 577889999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++|+++++ ++|+++.+
T Consensus 75 ~~Pt~~~~-~~G~~~~~ 90 (109)
T PRK09381 75 GIPTLLLF-KNGEVAAT 90 (109)
T ss_pred cCCEEEEE-eCCeEEEE
Confidence 99999999 78988764
No 178
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.22 E-value=5.5e-11 Score=89.52 Aligned_cols=69 Identities=22% Similarity=0.342 Sum_probs=59.5
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.+| ++|.|+++||++|+.+.|.|.++.+++++. +.++.|++|..+ ++++.|++
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~--~~f~kVDVDev~------------------------dva~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM--ASIYLVDVDKVP------------------------VYTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc--eEEEEEeccccH------------------------HHHHhcCc
Confidence 577 999999999999999999999999999642 778888888665 69999999
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
+..|+++++ .+|+-+.
T Consensus 67 ~amPtfvff-kngkh~~ 82 (114)
T cd02986 67 SYIPSTIFF-FNGQHMK 82 (114)
T ss_pred eeCcEEEEE-ECCcEEE
Confidence 999999988 6776443
No 179
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.22 E-value=1.1e-10 Score=90.69 Aligned_cols=84 Identities=18% Similarity=0.123 Sum_probs=59.5
Q ss_pred cCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 271 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (350)
-++|+|+|+|+++||++|+.+.+.. .++.+.+... +.+|.|+.+..++..+.+. ..+..
T Consensus 13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~---fv~VkvD~~~~~~~~~~~~---------------~~~~~ 74 (124)
T cd02955 13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNEN---FVPIKVDREERPDVDKIYM---------------NAAQA 74 (124)
T ss_pred HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCC---EEEEEEeCCcCcHHHHHHH---------------HHHHH
Confidence 4589999999999999999987622 2455555433 7777777765432211111 12334
Q ss_pred HcCCCCccEEEEECCCCCEEeccch
Q 018808 272 YFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 272 ~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
.||+.++|+++++|++|++++...+
T Consensus 75 ~~~~~G~Pt~vfl~~~G~~~~~~~~ 99 (124)
T cd02955 75 MTGQGGWPLNVFLTPDLKPFFGGTY 99 (124)
T ss_pred hcCCCCCCEEEEECCCCCEEeeeee
Confidence 6799999999999999999988755
No 180
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.22 E-value=3.4e-11 Score=92.52 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=63.3
Q ss_pred CCCEEEEEEec-------cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHH
Q 018808 196 EGKTIGLYFSM-------SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 268 (350)
Q Consensus 196 ~gk~vlv~f~~-------~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (350)
+|++++|+||| +||++|+.+.|.|.++.++++++ +.++.|++|+.+ ...+...+
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~----------------~w~d~~~~ 80 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRP----------------YWRDPNNP 80 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCcc----------------cccCcchh
Confidence 57899999999 99999999999999999998743 889999887532 11122357
Q ss_pred HHHHcCCC-CccEEEEECCCCCEEecc
Q 018808 269 LARYFELS-TLPTLVIIGPDGKTLHSN 294 (350)
Q Consensus 269 ~~~~~~v~-~~P~~~lid~~G~i~~~~ 294 (350)
+.+.|+|. ++||+++++..++++...
T Consensus 81 ~~~~~~I~~~iPT~~~~~~~~~l~~~~ 107 (119)
T cd02952 81 FRTDPKLTTGVPTLLRWKTPQRLVEDE 107 (119)
T ss_pred hHhccCcccCCCEEEEEcCCceecchh
Confidence 88999998 999999996655555433
No 181
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.22 E-value=7.4e-11 Score=90.29 Aligned_cols=69 Identities=16% Similarity=0.425 Sum_probs=57.7
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh-hcC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE-LFK 114 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 114 (350)
+|+ ++|.||++||++|+++.|.+.+++++++.+ ++.++.|+++.+.. .++. .|+
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~-~~~~~~vd~d~~~~-----------------------~~~~~~~~ 75 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS-NVKVAKFNADGEQR-----------------------EFAKEELQ 75 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC-CeEEEEEECCccch-----------------------hhHHhhcC
Confidence 568 999999999999999999999999999854 48899998876321 4565 599
Q ss_pred CCCcceEEEECCCCe
Q 018808 115 VMGIPHLVILDENGK 129 (350)
Q Consensus 115 v~~~P~~~lid~~G~ 129 (350)
+..+|++++++++++
T Consensus 76 v~~~Pti~~f~~~~~ 90 (109)
T cd02993 76 LKSFPTILFFPKNSR 90 (109)
T ss_pred CCcCCEEEEEcCCCC
Confidence 999999999977654
No 182
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.21 E-value=7.9e-11 Score=97.56 Aligned_cols=72 Identities=14% Similarity=0.199 Sum_probs=63.1
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++|+|.||++||++|+.+.|.|.+++.++.. +.++.|+++.. .++..|++.
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~----vkF~kVd~d~~------------------------~l~~~f~v~ 134 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA----VKFCKIRASAT------------------------GASDEFDTD 134 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC----eEEEEEeccch------------------------hhHHhCCCC
Confidence 35999999999999999999999999999853 88988887631 478899999
Q ss_pred CccEEEEECCCCCEEeccchh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~ 297 (350)
++||++++ ++|+++.+..|.
T Consensus 135 ~vPTllly-k~G~~v~~~vG~ 154 (175)
T cd02987 135 ALPALLVY-KGGELIGNFVRV 154 (175)
T ss_pred CCCEEEEE-ECCEEEEEEech
Confidence 99999999 899999988774
No 183
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.21 E-value=9.1e-11 Score=88.93 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=62.3
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
++++++.||++||++|+.+.|.+.++.++++.. .++.++.++++.. ...++++|++.
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~----------------------~~~~~~~~~i~ 74 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-DDVVIAKVDADEA----------------------NKDLAKKYGVS 74 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-CCEEEEEEECCCc----------------------chhhHHhCCCC
Confidence 568999999999999999999999999998732 2388888877641 14588999999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
++|++++++++|+....+.|
T Consensus 75 ~~P~~~~~~~~~~~~~~~~g 94 (105)
T cd02998 75 GFPTLKFFPKGSTEPVKYEG 94 (105)
T ss_pred CcCEEEEEeCCCCCccccCC
Confidence 99999999877666555555
No 184
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.21 E-value=4.6e-11 Score=89.56 Aligned_cols=76 Identities=12% Similarity=0.172 Sum_probs=63.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHh-cCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLK-GKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
++++++|.||++||++|+.+.+.+.++.+.++ ... +.++.|+++.. ..+.++|+
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~-----------------------~~~~~~~~ 68 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGK--VVVAKVDCTAN-----------------------NDLCSEYG 68 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCc--eEEEEeeccch-----------------------HHHHHhCC
Confidence 45689999999999999999999999999985 222 88888887642 56899999
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
+..+|++++++++|+...++.|
T Consensus 69 i~~~Pt~~~~~~~~~~~~~~~g 90 (101)
T cd02961 69 VRGYPTIKLFPNGSKEPVKYEG 90 (101)
T ss_pred CCCCCEEEEEcCCCcccccCCC
Confidence 9999999999887766666555
No 185
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.21 E-value=1e-10 Score=88.41 Aligned_cols=74 Identities=15% Similarity=0.240 Sum_probs=59.3
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++++|.||++||++|+.+.|.+.++++++... +.++.++++.. .+++++|++.
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~-----------------------~~~~~~~~i~ 71 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVH-----------------------QSLAQQYGVR 71 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcch-----------------------HHHHHHCCCC
Confidence 467999999999999999999999999998754 88888877643 4578999999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
++|++++++.+.+....+.|
T Consensus 72 ~~P~~~~~~~~~~~~~~~~g 91 (103)
T cd03001 72 GFPTIKVFGAGKNSPQDYQG 91 (103)
T ss_pred ccCEEEEECCCCcceeecCC
Confidence 99999999544243333433
No 186
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.21 E-value=1e-10 Score=88.23 Aligned_cols=69 Identities=25% Similarity=0.425 Sum_probs=57.9
Q ss_pred CCCcEEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 36 LKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 36 ~~gk~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
++|+++|+||++||++|+.+.|.+.++++.++.. ++.+..++++... .+++.|++
T Consensus 15 ~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~~~~~------------------------~~~~~~~i 69 (101)
T cd02994 15 LEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDL-GINVAKVDVTQEP------------------------GLSGRFFV 69 (101)
T ss_pred hCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccC-CeEEEEEEccCCH------------------------hHHHHcCC
Confidence 3445889999999999999999999999887543 4888888876553 58889999
Q ss_pred CCcceEEEECCCCeE
Q 018808 116 MGIPHLVILDENGKV 130 (350)
Q Consensus 116 ~~~P~~~lid~~G~v 130 (350)
.++|+++++ ++|++
T Consensus 70 ~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 70 TALPTIYHA-KDGVF 83 (101)
T ss_pred cccCEEEEe-CCCCE
Confidence 999999998 78875
No 187
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.19 E-value=1.3e-10 Score=87.98 Aligned_cols=73 Identities=32% Similarity=0.622 Sum_probs=59.6
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+++ ++|.||++||++|+.+.|.+.++.+.+++++.+.++.++++.+. ...+++.|++
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~----------------------~~~~~~~~~i 73 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE----------------------HDALKEEYNV 73 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc----------------------cHHHHHhCCC
Confidence 566 99999999999999999999999999975445778878776521 1378899999
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
+++|+++++ ++|+++.
T Consensus 74 ~~~Pt~~~~-~~g~~~~ 89 (104)
T cd02997 74 KGFPTFKYF-ENGKFVE 89 (104)
T ss_pred ccccEEEEE-eCCCeeE
Confidence 999999888 5777654
No 188
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.19 E-value=1.1e-10 Score=89.36 Aligned_cols=68 Identities=29% Similarity=0.485 Sum_probs=58.3
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.|+ ++|.||++||++|+.+.|.+.++++++.. .+.++.++++.+. ...+++.|++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~----------------------~~~~~~~~~i 72 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDK----------------------NKPLCGKYGV 72 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccc----------------------cHHHHHHcCC
Confidence 467 99999999999999999999999999864 4888889887632 1378999999
Q ss_pred CCcceEEEECCCC
Q 018808 116 MGIPHLVILDENG 128 (350)
Q Consensus 116 ~~~P~~~lid~~G 128 (350)
.++|+++++++.+
T Consensus 73 ~~~Pt~~~~~~~~ 85 (109)
T cd03002 73 QGFPTLKVFRPPK 85 (109)
T ss_pred CcCCEEEEEeCCC
Confidence 9999999997666
No 189
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.18 E-value=1.3e-10 Score=87.54 Aligned_cols=70 Identities=17% Similarity=0.332 Sum_probs=61.9
Q ss_pred CCc-EEEEEecCC--ChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhc
Q 018808 37 KGK-IGLYFSASW--CGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (350)
Q Consensus 37 ~gk-~~v~F~~~~--C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (350)
.|. ++|.||++| ||.|+.+.|.|.++.+++++ .+.++.++++... .++..|
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~------------------------~la~~f 79 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQ------------------------ALAARF 79 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCH------------------------HHHHHc
Confidence 444 999999997 99999999999999999976 4788899888775 699999
Q ss_pred CCCCcceEEEECCCCeEEec
Q 018808 114 KVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 114 ~v~~~P~~~lid~~G~v~~~ 133 (350)
+|.++||++++ ++|+++.+
T Consensus 80 ~V~sIPTli~f-kdGk~v~~ 98 (111)
T cd02965 80 GVLRTPALLFF-RDGRYVGV 98 (111)
T ss_pred CCCcCCEEEEE-ECCEEEEE
Confidence 99999999999 79998874
No 190
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.18 E-value=1.3e-10 Score=87.69 Aligned_cols=68 Identities=24% Similarity=0.557 Sum_probs=57.8
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccC-CCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 118 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 118 (350)
++|+||++||++|+.+.|.+.+++++++.. ..+.++.++++... .+++.|++.++
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~------------------------~~~~~~~v~~~ 74 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR------------------------ELCSEFQVRGY 74 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh------------------------hhHhhcCCCcC
Confidence 999999999999999999999999999762 25888888876543 68889999999
Q ss_pred ceEEEECCCCeEEe
Q 018808 119 PHLVILDENGKVLS 132 (350)
Q Consensus 119 P~~~lid~~G~v~~ 132 (350)
|+++++ ++|+.+.
T Consensus 75 Pt~~~~-~~g~~~~ 87 (102)
T cd03005 75 PTLLLF-KDGEKVD 87 (102)
T ss_pred CEEEEE-eCCCeee
Confidence 999999 6776554
No 191
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.18 E-value=1e-10 Score=88.17 Aligned_cols=69 Identities=26% Similarity=0.533 Sum_probs=59.0
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+++ ++|.||++||+.|+.+.+.+.++.+.++..+++.++.++++... .+++.|++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------------------------~~~~~~~i 67 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEK------------------------DLASRFGV 67 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchH------------------------HHHHhCCC
Confidence 677 99999999999999999999999999976535778777775543 68899999
Q ss_pred CCcceEEEECCCCe
Q 018808 116 MGIPHLVILDENGK 129 (350)
Q Consensus 116 ~~~P~~~lid~~G~ 129 (350)
.++|+++++++++.
T Consensus 68 ~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 68 SGFPTIKFFPKGKK 81 (102)
T ss_pred CcCCEEEEecCCCc
Confidence 99999999987775
No 192
>PRK10996 thioredoxin 2; Provisional
Probab=99.17 E-value=1.9e-10 Score=91.94 Aligned_cols=70 Identities=31% Similarity=0.701 Sum_probs=60.4
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++++++.. ++.++.++++... .+++.|+|
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~V 104 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAER------------------------ELSARFRI 104 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCH------------------------HHHHhcCC
Confidence 467 99999999999999999999999998865 4888888776553 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 105 ~~~Ptlii~-~~G~~v~~ 121 (139)
T PRK10996 105 RSIPTIMIF-KNGQVVDM 121 (139)
T ss_pred CccCEEEEE-ECCEEEEE
Confidence 999999998 58988764
No 193
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.17 E-value=1e-10 Score=90.47 Aligned_cols=75 Identities=31% Similarity=0.601 Sum_probs=55.3
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhh
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (350)
+..++| ++|+||++||++|+.+.|.+.+....... +..++.|.++.+.+ .+...
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~--~~~fv~v~vd~~~~-----------------------~~~~~ 69 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL--SHNFVMVNLEDDEE-----------------------PKDEE 69 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh--cCcEEEEEecCCCC-----------------------chhhh
Confidence 345778 99999999999999999999887665432 23466666664432 22335
Q ss_pred cCCCC--cceEEEECCCCeEEec
Q 018808 113 FKVMG--IPHLVILDENGKVLSD 133 (350)
Q Consensus 113 ~~v~~--~P~~~lid~~G~v~~~ 133 (350)
|++.+ +|+++++|++|+++.+
T Consensus 70 ~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 70 FSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred cccCCCccceEEEECCCCCCchh
Confidence 67665 9999999999998764
No 194
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.16 E-value=2.5e-10 Score=87.72 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=60.5
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++.++++ ++.++.|+++... .+++.|++
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~------------------------~l~~~~~v 73 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAP------------------------FLVEKLNI 73 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCH------------------------HHHHHCCC
Confidence 346 9999999999999999999999999885 3788889887664 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+.+.+
T Consensus 74 ~~vPt~l~f-k~G~~v~~ 90 (113)
T cd02989 74 KVLPTVILF-KNGKTVDR 90 (113)
T ss_pred ccCCEEEEE-ECCEEEEE
Confidence 999999999 79988875
No 195
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.16 E-value=6.7e-11 Score=90.96 Aligned_cols=91 Identities=27% Similarity=0.486 Sum_probs=61.7
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHH---HhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhh
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYN---ELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~---~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (350)
+|| +++.||++|||+|+.+.+.+....+ .+++ ++.++.+++++..+....+....+. ..-......+.+.
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~ 77 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQ----KNVRLSNKELAQR 77 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCH----SSCHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccc----hhhhHHHHHHHHH
Confidence 577 9999999999999999888875433 3322 4788888887665544444433221 0112344589999
Q ss_pred cCCCCcceEEEECCCCeEEec
Q 018808 113 FKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 113 ~~v~~~P~~~lid~~G~v~~~ 133 (350)
|++.++|+++++|++|+++.+
T Consensus 78 ~~v~gtPt~~~~d~~G~~v~~ 98 (112)
T PF13098_consen 78 YGVNGTPTIVFLDKDGKIVYR 98 (112)
T ss_dssp TT--SSSEEEECTTTSCEEEE
T ss_pred cCCCccCEEEEEcCCCCEEEE
Confidence 999999999999999998763
No 196
>PTZ00051 thioredoxin; Provisional
Probab=99.15 E-value=2e-10 Score=85.98 Aligned_cols=69 Identities=28% Similarity=0.609 Sum_probs=58.2
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.+.|.++.+++. ++.++.++++... .+++.|++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~~------------------------~~~~~~~v 69 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELS------------------------EVAEKENI 69 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcchH------------------------HHHHHCCC
Confidence 356 9999999999999999999999999765 3778888776432 68899999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 70 ~~~Pt~~~~-~~g~~~~~ 86 (98)
T PTZ00051 70 TSMPTFKVF-KNGSVVDT 86 (98)
T ss_pred ceeeEEEEE-eCCeEEEE
Confidence 999998888 79988764
No 197
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.6e-10 Score=90.67 Aligned_cols=116 Identities=22% Similarity=0.309 Sum_probs=94.1
Q ss_pred hhhhcccccCCc-eecCCCceeeccccCCC-EEEEEEec-cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHH
Q 018808 170 LRSVLTSHSRDF-VISSDGRKISVSDLEGK-TIGLYFSM-SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEES 246 (350)
Q Consensus 170 ~~~~~~~~~p~f-~~~~~g~~v~l~~~~gk-~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~ 246 (350)
+.-.+|..+||| +.|.+|+.++|.++.++ +|+++||. ...|-|.+....++.-|++++..+ .+|++++.|++ ..
T Consensus 61 ~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~GlS~D~s-~s 137 (211)
T KOG0855|consen 61 LKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGLSGDDS-AS 137 (211)
T ss_pred eeeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEeeccCch-HH
Confidence 345678999999 89999999999999875 88888773 466789999999999999999988 99999999954 34
Q ss_pred HHHhhcCCCCccccCCchhHHHHHHHcCCCCcc-------EEEEECCCCC
Q 018808 247 FKRDLGSMPWLALPFKDKSREKLARYFELSTLP-------TLVIIGPDGK 289 (350)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P-------~~~lid~~G~ 289 (350)
.++|..+.. +++..++|+.+++.+.+|+...| ..+++|..|.
T Consensus 138 qKaF~sKqn-lPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~ 186 (211)
T KOG0855|consen 138 QKAFASKQN-LPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGV 186 (211)
T ss_pred HHHhhhhcc-CCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCe
Confidence 455555443 77788999999999999986544 6788877653
No 198
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=6.6e-10 Score=88.16 Aligned_cols=120 Identities=21% Similarity=0.250 Sum_probs=95.3
Q ss_pred cccccCCc----eecCCCceeeccccCCCEEEEEEecc-CCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHH
Q 018808 174 LTSHSRDF----VISSDGRKISVSDLEGKTIGLYFSMS-SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFK 248 (350)
Q Consensus 174 ~~~~~p~f----~~~~~g~~v~l~~~~gk~vlv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~ 248 (350)
+..++|+| +.+..-+.++|++++||+|+++||.- +--.|..++-.+.+.+.+|+..+ .+|+++|+|+ .....
T Consensus 6 ~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n--~eVig~S~DS-~fshl 82 (196)
T KOG0852|consen 6 VFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN--TEVLGISTDS-VFSHL 82 (196)
T ss_pred cCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC--CeEEEEeccc-hhhhh
Confidence 34556777 23555678999999999999999844 55689999999999999999988 9999999994 33334
Q ss_pred Hhhc---CC---CCccccCCchhHHHHHHHcCC------CCccEEEEECCCCCEEeccch
Q 018808 249 RDLG---SM---PWLALPFKDKSREKLARYFEL------STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 249 ~~~~---~~---~~~~~~~~~~~~~~~~~~~~v------~~~P~~~lid~~G~i~~~~~~ 296 (350)
++++ +. +.+++|+++|...++++.||+ .++-.+++||++|.+++....
T Consensus 83 AW~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~N 142 (196)
T KOG0852|consen 83 AWINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITIN 142 (196)
T ss_pred hHhcCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeec
Confidence 4443 32 346799999999999999998 246689999999999886554
No 199
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.15 E-value=5.5e-10 Score=84.24 Aligned_cols=68 Identities=32% Similarity=0.718 Sum_probs=60.2
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|+||++||++|+.+.|.|.++.+.+.+ ++.++.|+++... .+++.|++.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~------------------------~l~~~~~v~ 70 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENK------------------------ELCKKYGVK 70 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSH------------------------HHHHHTTCS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccc------------------------hhhhccCCC
Confidence 56 99999999999999999999999999986 4889999887664 799999999
Q ss_pred CcceEEEECCCCeEEe
Q 018808 117 GIPHLVILDENGKVLS 132 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~ 132 (350)
++|+++++ .+|+...
T Consensus 71 ~~Pt~~~~-~~g~~~~ 85 (103)
T PF00085_consen 71 SVPTIIFF-KNGKEVK 85 (103)
T ss_dssp SSSEEEEE-ETTEEEE
T ss_pred CCCEEEEE-ECCcEEE
Confidence 99999999 6776654
No 200
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.14 E-value=3.4e-10 Score=84.64 Aligned_cols=70 Identities=24% Similarity=0.596 Sum_probs=60.2
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++++||++||+.|+.+.|.+.++.+++++ ++.++.++.+... +++..|++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~------------------------~l~~~~~v 65 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQ------------------------EIAEAAGI 65 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCH------------------------HHHHHCCC
Confidence 456 99999999999999999999999999875 4888888877654 67888999
Q ss_pred CCcceEEEECCCCeEEec
Q 018808 116 MGIPHLVILDENGKVLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~~ 133 (350)
.++|+++++ ++|+++.+
T Consensus 66 ~~vPt~~i~-~~g~~v~~ 82 (97)
T cd02949 66 MGTPTVQFF-KDKELVKE 82 (97)
T ss_pred eeccEEEEE-ECCeEEEE
Confidence 999999999 57888764
No 201
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.14 E-value=4.5e-10 Score=86.36 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=53.2
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
++.++++||++||++|+.+.|.|.++.+++ +. +.+..|+.|.. .+++++|++.
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~---i~~~~vd~d~~-----------------------~~l~~~~~v~ 74 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-DK---LKLEIYDFDED-----------------------KEKAEKYGVE 74 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-Cc---eEEEEEeCCcC-----------------------HHHHHHcCCC
Confidence 346889999999999999999999998776 22 88888887743 4588999999
Q ss_pred CccEEEEECC
Q 018808 277 TLPTLVIIGP 286 (350)
Q Consensus 277 ~~P~~~lid~ 286 (350)
++|++++++.
T Consensus 75 ~vPt~~i~~~ 84 (113)
T cd02975 75 RVPTTIFLQD 84 (113)
T ss_pred cCCEEEEEeC
Confidence 9999999954
No 202
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.14 E-value=7.1e-10 Score=87.53 Aligned_cols=71 Identities=13% Similarity=0.285 Sum_probs=58.7
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.++.+++++ ...++.|++|..+ +++..|++
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~------------------------dla~~y~I 75 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVP------------------------DFNTMYEL 75 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCH------------------------HHHHHcCc
Confidence 456 99999999999999999999999999975 3778889988775 68999999
Q ss_pred CCcceEEEECCCCe-EEec
Q 018808 116 MGIPHLVILDENGK-VLSD 133 (350)
Q Consensus 116 ~~~P~~~lid~~G~-v~~~ 133 (350)
++.|+++++=++|. .+.+
T Consensus 76 ~~~~t~~~ffk~g~~~vd~ 94 (142)
T PLN00410 76 YDPCTVMFFFRNKHIMIDL 94 (142)
T ss_pred cCCCcEEEEEECCeEEEEE
Confidence 98777773337887 5554
No 203
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.13 E-value=3.6e-10 Score=84.47 Aligned_cols=69 Identities=23% Similarity=0.544 Sum_probs=58.1
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|.||++||++|+.+.+.|.++.+++.. ++.++.++.+... .+++.|++.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~--~i~~~~vd~~~~~------------------------~~~~~~~i~ 67 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP--SVLFLSIEAEELP------------------------EISEKFEIT 67 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC--ceEEEEEccccCH------------------------HHHHhcCCc
Confidence 57 99999999999999999999999999732 5788888665432 688999999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++|+++++ ++|+++.+
T Consensus 68 ~~Pt~~~~-~~g~~~~~ 83 (97)
T cd02984 68 AVPTFVFF-RNGTIVDR 83 (97)
T ss_pred cccEEEEE-ECCEEEEE
Confidence 99999999 58988764
No 204
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=3.1e-10 Score=92.55 Aligned_cols=119 Identities=24% Similarity=0.428 Sum_probs=95.4
Q ss_pred hhhcCccCCceec-c-CCc---eeecCCCCCc-EEEEEec-CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC--H
Q 018808 13 SLLSSSARDFLIR-S-NGD---QVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--D 83 (350)
Q Consensus 13 ~~~g~~~p~f~~~-~-~g~---~~~l~~~~gk-~~v~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~--~ 83 (350)
..+|+++|+|+.+ . .|. .++++++.|| ++++||- ..-+.|..+...|+++|.+|.+++ .+++++++|+. .
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g-~eVigvS~Ds~fsH 81 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG-VEVIGVSTDSVFSH 81 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC-CEEEEEecCcHHHH
Confidence 4679999999885 3 553 9999999889 8888876 577999999999999999999996 99999999874 4
Q ss_pred HHHHhHHhcCCC---cccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEec
Q 018808 84 EAFKGYFSKMPW---LAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 84 ~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~ 133 (350)
..|++...+.+. ..+|.. +|.+.++++.||+. ..-.++|||++|++...
T Consensus 82 ~aW~~~~~~~~gi~~i~~Pmi-aD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~ 139 (194)
T COG0450 82 KAWKATIREAGGIGKIKFPMI-ADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHI 139 (194)
T ss_pred HHHHhcHHhcCCccceecceE-EcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEE
Confidence 467777555433 556654 56667999999985 34489999999998763
No 205
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.12 E-value=3.8e-10 Score=85.47 Aligned_cols=71 Identities=24% Similarity=0.518 Sum_probs=58.9
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|.||++||++|+.+.|.+.++.+.++..+.+.++.++++... ..+++.|++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----------------------~~~~~~~~i 73 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN-----------------------KDLAKKYGV 73 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc-----------------------hhhHHhCCC
Confidence 356 99999999999999999999999999974435888888876621 278999999
Q ss_pred CCcceEEEECCCCeE
Q 018808 116 MGIPHLVILDENGKV 130 (350)
Q Consensus 116 ~~~P~~~lid~~G~v 130 (350)
.++|+++++++.|+.
T Consensus 74 ~~~P~~~~~~~~~~~ 88 (105)
T cd02998 74 SGFPTLKFFPKGSTE 88 (105)
T ss_pred CCcCEEEEEeCCCCC
Confidence 999999999766543
No 206
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.12 E-value=1.6e-10 Score=89.04 Aligned_cols=68 Identities=10% Similarity=0.178 Sum_probs=57.6
Q ss_pred EEEEEecCCChh--hh--hhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 40 IGLYFSASWCGP--CQ--RFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 40 ~~v~F~~~~C~~--C~--~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+|++||+.||++ |+ .+.|.+.++++++-+.+++.++.|++|... .+++.|+|
T Consensus 30 vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~------------------------~La~~~~I 85 (120)
T cd03065 30 CLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA------------------------KVAKKLGL 85 (120)
T ss_pred EEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH------------------------HHHHHcCC
Confidence 888999999976 99 888989998888832225899999998775 79999999
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
+++||++++ ++|+++.
T Consensus 86 ~~iPTl~lf-k~G~~v~ 101 (120)
T cd03065 86 DEEDSIYVF-KDDEVIE 101 (120)
T ss_pred ccccEEEEE-ECCEEEE
Confidence 999999999 7898765
No 207
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.11 E-value=2.9e-10 Score=87.58 Aligned_cols=67 Identities=15% Similarity=0.359 Sum_probs=57.3
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|+||++||++|+.+.|.|.++.++++ ++.++.|+++.. .++..|++.
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~-------------------------~l~~~~~i~ 75 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKA-------------------------FLVNYLDIK 75 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhh-------------------------HHHHhcCCC
Confidence 46 9999999999999999999999999985 367777776432 578889999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++|+++++ ++|+.+.+
T Consensus 76 ~~Pt~~~f-~~G~~v~~ 91 (113)
T cd02957 76 VLPTLLVY-KNGELIDN 91 (113)
T ss_pred cCCEEEEE-ECCEEEEE
Confidence 99999999 78988875
No 208
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.11 E-value=9.6e-10 Score=94.21 Aligned_cols=69 Identities=23% Similarity=0.484 Sum_probs=58.2
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|+||++||++|+.+.|.+.+++++++. .+.+..++++... .+++.|+|.
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~------------------------~l~~~~~I~ 105 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRAL------------------------NLAKRFAIK 105 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccH------------------------HHHHHcCCC
Confidence 46 99999999999999999999999999975 4777777665442 689999999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++|++++++ +|+++.+
T Consensus 106 ~~PTl~~f~-~G~~v~~ 121 (224)
T PTZ00443 106 GYPTLLLFD-KGKMYQY 121 (224)
T ss_pred cCCEEEEEE-CCEEEEe
Confidence 999999995 7877653
No 209
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.08 E-value=4.6e-10 Score=86.48 Aligned_cols=69 Identities=26% Similarity=0.423 Sum_probs=55.5
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccC-CCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ-GDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
++ ++|+||++||++|+.+.|.+.++.+++++. +.+.+..++++.+. ...+++.|++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~----------------------~~~~~~~~~i 76 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE----------------------NVALCRDFGV 76 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh----------------------hHHHHHhCCC
Confidence 36 999999999999999999999999998653 24777777765332 1378899999
Q ss_pred CCcceEEEECCCC
Q 018808 116 MGIPHLVILDENG 128 (350)
Q Consensus 116 ~~~P~~~lid~~G 128 (350)
+++|+++++.+..
T Consensus 77 ~~~Pt~~lf~~~~ 89 (114)
T cd02992 77 TGYPTLRYFPPFS 89 (114)
T ss_pred CCCCEEEEECCCC
Confidence 9999999995443
No 210
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.07 E-value=7.9e-10 Score=83.61 Aligned_cols=67 Identities=21% Similarity=0.331 Sum_probs=54.8
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
++.++|+||++||++|+.+.|.+.++.+.+++. .++.+..|+++. .++...+++.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~------------------------~~~~~~~~~~ 72 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATA------------------------NDVPSEFVVD 72 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcc------------------------hhhhhhccCC
Confidence 578999999999999999999999999998763 238888887763 2356678889
Q ss_pred CccEEEEECCCCC
Q 018808 277 TLPTLVIIGPDGK 289 (350)
Q Consensus 277 ~~P~~~lid~~G~ 289 (350)
++|+++++. +|+
T Consensus 73 ~~Pt~~~~~-~~~ 84 (104)
T cd02995 73 GFPTILFFP-AGD 84 (104)
T ss_pred CCCEEEEEc-CCC
Confidence 999999994 454
No 211
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.05 E-value=4.8e-10 Score=83.96 Aligned_cols=71 Identities=25% Similarity=0.492 Sum_probs=59.3
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
.+++ ++|.||++||++|+.+.+.+.++.+.++.+..+.++.++++... .+++.|+
T Consensus 13 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------------------------~~~~~~~ 68 (101)
T cd02961 13 KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN------------------------DLCSEYG 68 (101)
T ss_pred hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH------------------------HHHHhCC
Confidence 3556 99999999999999999999999999952225888888876543 7899999
Q ss_pred CCCcceEEEECCCCeE
Q 018808 115 VMGIPHLVILDENGKV 130 (350)
Q Consensus 115 v~~~P~~~lid~~G~v 130 (350)
+.++|++++++++|..
T Consensus 69 i~~~Pt~~~~~~~~~~ 84 (101)
T cd02961 69 VRGYPTIKLFPNGSKE 84 (101)
T ss_pred CCCCCEEEEEcCCCcc
Confidence 9999999999877543
No 212
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=4.5e-10 Score=94.29 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=63.9
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
-.+|.|+|+|.|+||+||+...|.+..+..+|+. ..++.|.+|. .+..+.-+|
T Consensus 19 ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~-----------------------c~~taa~~g 71 (288)
T KOG0908|consen 19 AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDE-----------------------CRGTAATNG 71 (288)
T ss_pred cCceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHH-----------------------hhchhhhcC
Confidence 3468999999999999999999999999999965 6688887762 244677899
Q ss_pred CCCccEEEEECCCCCEEeccchh
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
|.++||++++ ++|+-+.+..|.
T Consensus 72 V~amPTFiff-~ng~kid~~qGA 93 (288)
T KOG0908|consen 72 VNAMPTFIFF-RNGVKIDQIQGA 93 (288)
T ss_pred cccCceEEEE-ecCeEeeeecCC
Confidence 9999999999 999888887764
No 213
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.03 E-value=5.8e-10 Score=93.61 Aligned_cols=71 Identities=13% Similarity=0.148 Sum_probs=61.7
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+++|+|.||++||++|+.+.|.|.+++.++.. +.|+.|+++. ....|++.
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~ad~--------------------------~~~~~~i~ 151 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIISTQ--------------------------CIPNYPDK 151 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEhHH--------------------------hHhhCCCC
Confidence 46999999999999999999999999999853 7888887651 24689999
Q ss_pred CccEEEEECCCCCEEeccchhh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~~ 298 (350)
.+||++++ ++|+++.+..|..
T Consensus 152 ~lPTlliy-k~G~~v~~ivG~~ 172 (192)
T cd02988 152 NLPTILVY-RNGDIVKQFIGLL 172 (192)
T ss_pred CCCEEEEE-ECCEEEEEEeCch
Confidence 99999999 9999999988843
No 214
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.03 E-value=2e-09 Score=80.74 Aligned_cols=68 Identities=31% Similarity=0.674 Sum_probs=58.8
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|+||++||++|+.+.+.|.++.++++. ++.++.++++... .+++.|++.
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~ 67 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENP------------------------DIAAKYGIR 67 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCH------------------------HHHHHcCCC
Confidence 45 99999999999999999999999988864 4889999877653 678899999
Q ss_pred CcceEEEECCCCeEEe
Q 018808 117 GIPHLVILDENGKVLS 132 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~ 132 (350)
.+|+++++ ++|+++.
T Consensus 68 ~~P~~~~~-~~g~~~~ 82 (101)
T TIGR01068 68 SIPTLLLF-KNGKEVD 82 (101)
T ss_pred cCCEEEEE-eCCcEee
Confidence 99999999 6787654
No 215
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.03 E-value=2.7e-09 Score=77.01 Aligned_cols=62 Identities=16% Similarity=0.244 Sum_probs=51.1
Q ss_pred EEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCcc
Q 018808 200 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLP 279 (350)
Q Consensus 200 vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P 279 (350)
.+..||++||++|+...+.|.+++++++.. +.++.|+.+.+ .++.++||+.++|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~-----------------------~~~~~~~~v~~vP 55 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMEN-----------------------PQKAMEYGIMAVP 55 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccC-----------------------HHHHHHcCCccCC
Confidence 467899999999999999999999988644 88888887644 3467889999999
Q ss_pred EEEEECCCCCE
Q 018808 280 TLVIIGPDGKT 290 (350)
Q Consensus 280 ~~~lid~~G~i 290 (350)
++++ +|+.
T Consensus 56 t~~~---~g~~ 63 (82)
T TIGR00411 56 AIVI---NGDV 63 (82)
T ss_pred EEEE---CCEE
Confidence 9886 5654
No 216
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.02 E-value=1.2e-09 Score=107.02 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=62.6
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHH
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 270 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (350)
..+||+|+|+||++||++|+.+.+.+ .++.++++ + +.++.|+++++.+ ...++.
T Consensus 471 ~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~--~~~v~vDvt~~~~-------------------~~~~l~ 527 (571)
T PRK00293 471 KGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--D--TVLLQADVTANNA-------------------EDVALL 527 (571)
T ss_pred HhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--C--CEEEEEECCCCCh-------------------hhHHHH
Confidence 34589999999999999999988764 56666664 2 7788887764321 236789
Q ss_pred HHcCCCCccEEEEECCCCCEE--eccch
Q 018808 271 RYFELSTLPTLVIIGPDGKTL--HSNVA 296 (350)
Q Consensus 271 ~~~~v~~~P~~~lid~~G~i~--~~~~~ 296 (350)
++|++.++|+++++|++|+++ .+..|
T Consensus 528 ~~~~v~g~Pt~~~~~~~G~~i~~~r~~G 555 (571)
T PRK00293 528 KHYNVLGLPTILFFDAQGQEIPDARVTG 555 (571)
T ss_pred HHcCCCCCCEEEEECCCCCCcccccccC
Confidence 999999999999999999985 45555
No 217
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.02 E-value=2.3e-09 Score=80.92 Aligned_cols=64 Identities=23% Similarity=0.465 Sum_probs=54.9
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|.||++||++|+.+.|.|.++++++.. .+.++.++++... .+++.|+++
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~------------------------~~~~~~~i~ 71 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQ------------------------SLAQQYGVR 71 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchH------------------------HHHHHCCCC
Confidence 45 99999999999999999999999999865 4788888876543 688999999
Q ss_pred CcceEEEECCC
Q 018808 117 GIPHLVILDEN 127 (350)
Q Consensus 117 ~~P~~~lid~~ 127 (350)
++|++++++++
T Consensus 72 ~~P~~~~~~~~ 82 (103)
T cd03001 72 GFPTIKVFGAG 82 (103)
T ss_pred ccCEEEEECCC
Confidence 99999999644
No 218
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.02 E-value=2.1e-09 Score=78.93 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=60.4
Q ss_pred CEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCC
Q 018808 198 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 277 (350)
Q Consensus 198 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 277 (350)
++++|.||++||++|+.+.+.+.++.++ ..+ +.++.|+++.. .++.+.|++.+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~--~~~~~i~~~~~-----------------------~~~~~~~~v~~ 63 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPK--VKFVKVDVDEN-----------------------PELAEEYGVRS 63 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CCC--ceEEEEECCCC-----------------------hhHHHhcCccc
Confidence 7899999999999999999999999887 223 88998888753 45788999999
Q ss_pred ccEEEEECCCCCEEeccch
Q 018808 278 LPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 278 ~P~~~lid~~G~i~~~~~~ 296 (350)
+|+++++ ++|+++....|
T Consensus 64 ~P~~~~~-~~g~~~~~~~g 81 (93)
T cd02947 64 IPTFLFF-KNGKEVDRVVG 81 (93)
T ss_pred ccEEEEE-ECCEEEEEEec
Confidence 9999999 67887777766
No 219
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.01 E-value=5.2e-09 Score=81.45 Aligned_cols=79 Identities=19% Similarity=0.413 Sum_probs=55.3
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC-
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK- 114 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~- 114 (350)
.|+ ++|+|+++|||+|+.+.|.|.++.++. +..+..|++|.+.. ....+...-.++.+.|+
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGS-------------FEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccC-------------cCcccHHHHHHHHHHcCC
Confidence 456 899999999999999999999998873 35688888774320 00000011124555554
Q ss_pred ---CCCcceEEEECCCCeEEec
Q 018808 115 ---VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 115 ---v~~~P~~~lid~~G~v~~~ 133 (350)
+.++|+++++ ++|+.+.+
T Consensus 85 ~~~i~~~PT~v~~-k~Gk~v~~ 105 (122)
T TIGR01295 85 PTSFMGTPTFVHI-TDGKQVSV 105 (122)
T ss_pred cccCCCCCEEEEE-eCCeEEEE
Confidence 5669999999 89988874
No 220
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.01 E-value=1.2e-09 Score=84.05 Aligned_cols=78 Identities=22% Similarity=0.502 Sum_probs=61.3
Q ss_pred CCCc-EEEEEec-------CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHH
Q 018808 36 LKGK-IGLYFSA-------SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 107 (350)
Q Consensus 36 ~~gk-~~v~F~~-------~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (350)
.+|+ ++|+||+ +||++|+.+.|.|.++.++++. ++.++.|+++.... | .+.+.
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~----------w-------~d~~~ 79 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPY----------W-------RDPNN 79 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCccc----------c-------cCcch
Confidence 3578 9999999 9999999999999999999874 47889998876431 0 11224
Q ss_pred HHHhhcCCC-CcceEEEECCCCeEEe
Q 018808 108 KLDELFKVM-GIPHLVILDENGKVLS 132 (350)
Q Consensus 108 ~l~~~~~v~-~~P~~~lid~~G~v~~ 132 (350)
.++..|++. ++||+++++..++++.
T Consensus 80 ~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 80 PFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred hhHhccCcccCCCEEEEEcCCceecc
Confidence 788899998 9999999965555554
No 221
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.01 E-value=2.2e-09 Score=81.17 Aligned_cols=66 Identities=23% Similarity=0.543 Sum_probs=54.6
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ ++|+||++||++|+.+.|.+.++.+.++...++.+..++++.. .++..+++.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-------------------------~~~~~~~~~ 72 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-------------------------DVPSEFVVD 72 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-------------------------hhhhhccCC
Confidence 57 9999999999999999999999999997643588888877643 356678889
Q ss_pred CcceEEEECCCC
Q 018808 117 GIPHLVILDENG 128 (350)
Q Consensus 117 ~~P~~~lid~~G 128 (350)
++|+++++.+++
T Consensus 73 ~~Pt~~~~~~~~ 84 (104)
T cd02995 73 GFPTILFFPAGD 84 (104)
T ss_pred CCCEEEEEcCCC
Confidence 999999995444
No 222
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.99 E-value=2.3e-09 Score=100.97 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=58.8
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
.+++++||+||++||++|+.+.|.+.++++++++.+ +.++.|++|.+.. ....+.|+
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~--v~~~kVdvD~~~~---------------------~~~~~~~~ 425 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG--VKVAKFRADGDQK---------------------EFAKQELQ 425 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--cEEEEEECCCCcc---------------------HHHHHHcC
Confidence 367899999999999999999999999999998766 8899998884321 22346899
Q ss_pred CCCccEEEEECCCCC
Q 018808 275 LSTLPTLVIIGPDGK 289 (350)
Q Consensus 275 v~~~P~~~lid~~G~ 289 (350)
|.++||++++ ++|.
T Consensus 426 I~~~PTii~F-k~g~ 439 (463)
T TIGR00424 426 LGSFPTILFF-PKHS 439 (463)
T ss_pred CCccceEEEE-ECCC
Confidence 9999999999 5553
No 223
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.99 E-value=2e-09 Score=89.16 Aligned_cols=67 Identities=10% Similarity=0.223 Sum_probs=58.1
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
+. ++|+||++||++|+.+.|.|.+|+++++ .+.|+.|+++.. .++..|++.
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~---~vkF~kVd~d~~-------------------------~l~~~f~v~ 134 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP---AVKFCKIRASAT-------------------------GASDEFDTD 134 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC---CeEEEEEeccch-------------------------hhHHhCCCC
Confidence 35 9999999999999999999999999985 388888887632 477889999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++|+++++ ++|+++.+
T Consensus 135 ~vPTllly-k~G~~v~~ 150 (175)
T cd02987 135 ALPALLVY-KGGELIGN 150 (175)
T ss_pred CCCEEEEE-ECCEEEEE
Confidence 99999999 79998864
No 224
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=6.7e-09 Score=82.12 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=89.5
Q ss_pred cCCc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-------CHHHHHH
Q 018808 178 SRDF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEESFKR 249 (350)
Q Consensus 178 ~p~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~ 249 (350)
.-+| ..+.+|+.++++.++||++||.-.|+.|+.-......|+.++++|+++| ++|++..+++ +.++...
T Consensus 14 iydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCNQFg~QEp~~n~Ei~~ 91 (171)
T KOG1651|consen 14 IYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCNQFGNQEPGSNEEILN 91 (171)
T ss_pred eeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccccccCcCCCCcHHHHH
Confidence 3456 5799999999999999999999999999998878889999999999999 9999999973 5567777
Q ss_pred hhcCCCCccccCCch------hHHHHHHHc----------CCCCccEEEEECCCCCEEeccch
Q 018808 250 DLGSMPWLALPFKDK------SREKLARYF----------ELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 250 ~~~~~~~~~~~~~~~------~~~~~~~~~----------~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
++.......+|+... ....+.+-+ .|..--+-||||++|+++.|+..
T Consensus 92 f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~p 154 (171)
T KOG1651|consen 92 FVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSP 154 (171)
T ss_pred HHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCC
Confidence 776444444444321 112222222 23444578999999999999876
No 225
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.96 E-value=3.3e-09 Score=81.54 Aligned_cols=60 Identities=20% Similarity=0.340 Sum_probs=52.3
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
++|+||++||++|+.+.|.|.++...+ + .+.+..++.+..+ .+++.|++.++|
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~------------------------~l~~~~~v~~vP 77 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDK------------------------EKAEKYGVERVP 77 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCH------------------------HHHHHcCCCcCC
Confidence 889999999999999999999998876 2 4888888887654 688999999999
Q ss_pred eEEEECC
Q 018808 120 HLVILDE 126 (350)
Q Consensus 120 ~~~lid~ 126 (350)
++++++.
T Consensus 78 t~~i~~~ 84 (113)
T cd02975 78 TTIFLQD 84 (113)
T ss_pred EEEEEeC
Confidence 9999964
No 226
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.9e-09 Score=101.01 Aligned_cols=92 Identities=16% Similarity=0.222 Sum_probs=72.4
Q ss_pred ceecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCcccc
Q 018808 181 FVISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALP 260 (350)
Q Consensus 181 f~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~ 260 (350)
.+..++...+...-..+..++|.|||+||+.|+...|.+.+.++.+++.++.+.+.-|.+...
T Consensus 26 ~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~----------------- 88 (493)
T KOG0190|consen 26 DVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE----------------- 88 (493)
T ss_pred ceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-----------------
Confidence 333333333443344567899999999999999999999999999999876688888765422
Q ss_pred CCchhHHHHHHHcCCCCccEEEEECCCCCEEeccch
Q 018808 261 FKDKSREKLARYFELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 261 ~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
++++.+|+|.++||+-++ ++|+....+.|
T Consensus 89 ------~~~~~~y~v~gyPTlkiF-rnG~~~~~Y~G 117 (493)
T KOG0190|consen 89 ------SDLASKYEVRGYPTLKIF-RNGRSAQDYNG 117 (493)
T ss_pred ------hhhHhhhcCCCCCeEEEE-ecCCcceeccC
Confidence 678999999999999999 99997555555
No 227
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.95 E-value=1.5e-08 Score=86.28 Aligned_cols=112 Identities=25% Similarity=0.545 Sum_probs=87.7
Q ss_pred Ccee-ccCCceeecCCCCCc-EEEEEecCCCh-hhhhhhHHHHHHHHHhc-cCC-CEEEEEEECCCC---HHHHHhHHh-
Q 018808 21 DFLI-RSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELS-RQG-DFEVIFVSGDED---DEAFKGYFS- 91 (350)
Q Consensus 21 ~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~-~C~~~~~~l~~l~~~~~-~~~-~~~~v~i~~d~~---~~~~~~~~~- 91 (350)
+|++ +.+|+.+++.+++|| ++|+|..+.|| .|..+...|..+.+++. ..+ +++++.|++|.+ ++-.+++..
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 7877 689999999999999 99999999998 79999999999999998 333 799999999754 555666666
Q ss_pred c-CC-CcccccCChhhHHHHHhhcCCC---------------CcceEEEECCCCeEEec
Q 018808 92 K-MP-WLAVPFSDSETRDKLDELFKVM---------------GIPHLVILDENGKVLSD 133 (350)
Q Consensus 92 ~-~~-~~~~~~~~~~~~~~l~~~~~v~---------------~~P~~~lid~~G~v~~~ 133 (350)
. .+ |..+... .+..+++++.|++. +...++++|++|++...
T Consensus 129 ~~~~~~~~ltg~-~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~ 186 (207)
T COG1999 129 NFDPRWIGLTGT-PEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGT 186 (207)
T ss_pred cCCCCeeeeeCC-HHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEE
Confidence 2 12 3333333 66677888888875 23478899999998875
No 228
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.93 E-value=5.2e-09 Score=81.28 Aligned_cols=97 Identities=10% Similarity=0.180 Sum_probs=63.3
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHH---HHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLV---EVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 271 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~---~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (350)
-++|+|+|+|++.||++|+.+...+- ++.+...+ . +.+|.+..|.+.. +. .
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~--Fv~V~l~~d~td~------------~~---~-------- 74 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-D--FIMLNLVHETTDK------------NL---S-------- 74 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-C--eEEEEEEeccCCC------------Cc---C--------
Confidence 35899999999999999999987542 23333322 2 5444554442210 00 0
Q ss_pred HcCCCCccEEEEECCCCCEEeccchhhhhhcCCccCCCCccchHHHHHHHH
Q 018808 272 YFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQR 322 (350)
Q Consensus 272 ~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~ 322 (350)
..| .++|+++++|++|+++.+..|.. +...|-|.+.+++.|.+.-+
T Consensus 75 ~~g-~~vPtivFld~~g~vi~~i~Gy~----~~~~~~y~~~~~~~~~~~m~ 120 (130)
T cd02960 75 PDG-QYVPRIMFVDPSLTVRADITGRY----SNRLYTYEPADIPLLIENMK 120 (130)
T ss_pred ccC-cccCeEEEECCCCCCcccccccc----cCccceeCcCcHHHHHHHHH
Confidence 022 47999999999999999988754 23456677777777765443
No 229
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.92 E-value=6.9e-09 Score=73.67 Aligned_cols=59 Identities=12% Similarity=0.101 Sum_probs=47.4
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
.|.||++|||+|+.+.|.+.++.+++..+ ++++-|+ + .+.+..||+.++|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~---~~~~~v~--~------------------------~~~a~~~~v~~vPt 52 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID---AEFEKVT--D------------------------MNEILEAGVTATPG 52 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC---eEEEEeC--C------------------------HHHHHHcCCCcCCE
Confidence 37899999999999999999999998654 6776553 1 11256799999999
Q ss_pred EEEECCCCCEE
Q 018808 281 LVIIGPDGKTL 291 (350)
Q Consensus 281 ~~lid~~G~i~ 291 (350)
+++ ||+++
T Consensus 53 i~i---~G~~~ 60 (76)
T TIGR00412 53 VAV---DGELV 60 (76)
T ss_pred EEE---CCEEE
Confidence 998 88888
No 230
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.92 E-value=3.7e-09 Score=101.77 Aligned_cols=77 Identities=19% Similarity=0.322 Sum_probs=64.4
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++++++|.|||+||++|+.+.|.+.++++.+.+.+.++.++.|+++.. .+++++|+|
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i 73 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-----------------------KDLAQKYGV 73 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-----------------------HHHHHhCCC
Confidence 467899999999999999999999999999887655588888887743 458999999
Q ss_pred CCccEEEEECCCCCE-Eeccch
Q 018808 276 STLPTLVIIGPDGKT-LHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i-~~~~~~ 296 (350)
.++|+++++ ++|+. +..+.|
T Consensus 74 ~~~Pt~~~~-~~g~~~~~~~~g 94 (462)
T TIGR01130 74 SGYPTLKIF-RNGEDSVSDYNG 94 (462)
T ss_pred ccccEEEEE-eCCccceeEecC
Confidence 999999999 67776 555544
No 231
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.90 E-value=2.8e-08 Score=77.21 Aligned_cols=83 Identities=25% Similarity=0.215 Sum_probs=57.0
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHH
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKL 109 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (350)
+.-++| ++|+|+++||+.|+.+.+.. .++.+.+.+ ++.+|.++.+...+..+.+ ....
T Consensus 11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~----------------~~~~ 72 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIY----------------MNAA 72 (124)
T ss_pred HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHH----------------HHHH
Confidence 344678 99999999999999887632 355555543 3677777665543211111 1122
Q ss_pred HhhcCCCCcceEEEECCCCeEEecC
Q 018808 110 DELFKVMGIPHLVILDENGKVLSDG 134 (350)
Q Consensus 110 ~~~~~v~~~P~~~lid~~G~v~~~~ 134 (350)
...|++.++|+++++|++|++++..
T Consensus 73 ~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 73 QAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred HHhcCCCCCCEEEEECCCCCEEeee
Confidence 3367999999999999999999864
No 232
>PLN02309 5'-adenylylsulfate reductase
Probab=98.90 E-value=9.1e-09 Score=96.94 Aligned_cols=67 Identities=16% Similarity=0.303 Sum_probs=56.8
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH-HcC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR-YFE 274 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 274 (350)
+++++||+||++||++|+.+.|.+.++++++...+ +.++.|++|... .++++ .|+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~--V~f~kVD~d~~~----------------------~~la~~~~~ 419 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG--VKVAKFRADGDQ----------------------KEFAKQELQ 419 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--eEEEEEECCCcc----------------------hHHHHhhCC
Confidence 57899999999999999999999999999998766 999999887321 33554 699
Q ss_pred CCCccEEEEECC
Q 018808 275 LSTLPTLVIIGP 286 (350)
Q Consensus 275 v~~~P~~~lid~ 286 (350)
|.++||++++.+
T Consensus 420 I~~~PTil~f~~ 431 (457)
T PLN02309 420 LGSFPTILLFPK 431 (457)
T ss_pred CceeeEEEEEeC
Confidence 999999999943
No 233
>PTZ00102 disulphide isomerase; Provisional
Probab=98.90 E-value=6.3e-09 Score=100.71 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=62.3
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
.+++.++|.||++||++|+++.|.+.++++.+...+.++.+..|+++.. .+++++|+
T Consensus 47 ~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-----------------------~~l~~~~~ 103 (477)
T PTZ00102 47 TENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-----------------------MELAQEFG 103 (477)
T ss_pred hcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-----------------------HHHHHhcC
Confidence 3578999999999999999999999999988876544578888877643 56899999
Q ss_pred CCCccEEEEECCCCCEEeccch
Q 018808 275 LSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~~~~ 296 (350)
|.++|++++++. |+.+ .+.|
T Consensus 104 i~~~Pt~~~~~~-g~~~-~y~g 123 (477)
T PTZ00102 104 VRGYPTIKFFNK-GNPV-NYSG 123 (477)
T ss_pred CCcccEEEEEEC-CceE-EecC
Confidence 999999999954 5544 4444
No 234
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.7e-08 Score=77.42 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=99.2
Q ss_pred hcccccCCc-eecCCCceeeccccCCCEEEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHh
Q 018808 173 VLTSHSRDF-VISSDGRKISVSDLEGKTIGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRD 250 (350)
Q Consensus 173 ~~~~~~p~f-~~~~~g~~v~l~~~~gk~vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~ 250 (350)
.+|.++|+| +.+.+...++++++.||..+|..+ +-..|.|......+++...++.+ ..++.||+| -+-+..+|
T Consensus 19 ~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~----~~Vl~IS~D-LPFAq~Rf 93 (158)
T COG2077 19 QVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN----TVVLCISMD-LPFAQKRF 93 (158)
T ss_pred ccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC----cEEEEEeCC-ChhHHhhh
Confidence 578999999 788999999999999986555554 55889999999999998888765 789999999 77788999
Q ss_pred hcCCCCccccCCchh-HHHHHHHcCC--CCcc-------EEEEECCCCCEEeccchhh
Q 018808 251 LGSMPWLALPFKDKS-REKLARYFEL--STLP-------TLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 251 ~~~~~~~~~~~~~~~-~~~~~~~~~v--~~~P-------~~~lid~~G~i~~~~~~~~ 298 (350)
+...+.-++..++|. +.++.++||+ ...| +.+++|.+|+|++......
T Consensus 94 C~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv~e 151 (158)
T COG2077 94 CGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELVPE 151 (158)
T ss_pred hhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEccch
Confidence 998876667777775 4568899996 3343 7899999999999887643
No 235
>PHA02125 thioredoxin-like protein
Probab=98.87 E-value=1.1e-08 Score=72.46 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=45.5
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.||++||++|+...|.|.++. ++++-|+.|.. .+++++|++.++||
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~-----------------------~~l~~~~~v~~~PT 49 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEG-----------------------VELTAKHHIRSLPT 49 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCC-----------------------HHHHHHcCCceeCe
Confidence 78999999999999999886541 44555554432 56899999999999
Q ss_pred EEEECCCCCEEeccch
Q 018808 281 LVIIGPDGKTLHSNVA 296 (350)
Q Consensus 281 ~~lid~~G~i~~~~~~ 296 (350)
++ +|+.+.+..|
T Consensus 50 ~~----~g~~~~~~~G 61 (75)
T PHA02125 50 LV----NTSTLDRFTG 61 (75)
T ss_pred EE----CCEEEEEEeC
Confidence 86 5777766655
No 236
>PTZ00062 glutaredoxin; Provisional
Probab=98.87 E-value=8.3e-09 Score=87.00 Aligned_cols=65 Identities=11% Similarity=0.093 Sum_probs=56.2
Q ss_pred CEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCC
Q 018808 198 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 277 (350)
Q Consensus 198 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 277 (350)
..++++|||+|||+|+.+.+.|.++.+++++ +.++.|+.| |+|.+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~----~~F~~V~~d-------------------------------~~V~~ 62 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS----LEFYVVNLA-------------------------------DANNE 62 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC----cEEEEEccc-------------------------------cCccc
Confidence 4689999999999999999999999999854 777777422 89999
Q ss_pred ccEEEEECCCCCEEeccchhh
Q 018808 278 LPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 278 ~P~~~lid~~G~i~~~~~~~~ 298 (350)
+|+++++ ++|+++.+..|..
T Consensus 63 vPtfv~~-~~g~~i~r~~G~~ 82 (204)
T PTZ00062 63 YGVFEFY-QNSQLINSLEGCN 82 (204)
T ss_pred ceEEEEE-ECCEEEeeeeCCC
Confidence 9999999 8999999988743
No 237
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.84 E-value=4.5e-08 Score=75.45 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=59.4
Q ss_pred cccCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHH
Q 018808 193 SDLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 269 (350)
Q Consensus 193 ~~~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (350)
+.-++|+++|+|+++||++|..+...+ .++.+.+.+. +.++.++.++. ...++
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~---~v~~~~d~~~~---------------------e~~~~ 68 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN---FIFWQCDIDSS---------------------EGQRF 68 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC---EEEEEecCCCc---------------------cHHHH
Confidence 334589999999999999999986532 2244444432 55555544421 22568
Q ss_pred HHHcCCCCccEEEEECC-CCCEEeccchh
Q 018808 270 ARYFELSTLPTLVIIGP-DGKTLHSNVAE 297 (350)
Q Consensus 270 ~~~~~v~~~P~~~lid~-~G~i~~~~~~~ 297 (350)
++.|++.++|+++++|+ +|+++.+..|.
T Consensus 69 ~~~~~~~~~P~~~~i~~~~g~~l~~~~G~ 97 (114)
T cd02958 69 LQSYKVDKYPHIAIIDPRTGEVLKVWSGN 97 (114)
T ss_pred HHHhCccCCCeEEEEeCccCcEeEEEcCC
Confidence 89999999999999999 89999998884
No 238
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=98.84 E-value=2.9e-08 Score=84.04 Aligned_cols=114 Identities=18% Similarity=0.291 Sum_probs=88.2
Q ss_pred Ccee-ccCCceeecCCCCCc-EEEEEecCCCh-hhhhhhHHHHHHHHHhccCC--CEEEEEEECCC---CHHHHHhHHhc
Q 018808 21 DFLI-RSNGDQVKLDSLKGK-IGLYFSASWCG-PCQRFTPILAEVYNELSRQG--DFEVIFVSGDE---DDEAFKGYFSK 92 (350)
Q Consensus 21 ~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~-~C~~~~~~l~~l~~~~~~~~--~~~~v~i~~d~---~~~~~~~~~~~ 92 (350)
+|.+ +.+|+.++.+++.|| ++++|-.+.|| .|..++-.|.....++.++. .+.-|.|++|. +.+.++++.++
T Consensus 121 pF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~e 200 (280)
T KOG2792|consen 121 PFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSE 200 (280)
T ss_pred ceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHh
Confidence 6766 789999999999999 99999999998 79999999988888887653 34468888886 56677788777
Q ss_pred CCCcccc-cCChhhHHHHHhhcCCCCcc---------------eEEEECCCCeEEecC
Q 018808 93 MPWLAVP-FSDSETRDKLDELFKVMGIP---------------HLVILDENGKVLSDG 134 (350)
Q Consensus 93 ~~~~~~~-~~~~~~~~~l~~~~~v~~~P---------------~~~lid~~G~v~~~~ 134 (350)
+.-..+. ....+.-+.+|+.|.|...+ .+||+||+|+.+...
T Consensus 201 F~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~ 258 (280)
T KOG2792|consen 201 FHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYY 258 (280)
T ss_pred cChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhh
Confidence 5422222 33456667899999885332 678999999988753
No 239
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=9e-09 Score=86.58 Aligned_cols=73 Identities=30% Similarity=0.591 Sum_probs=59.4
Q ss_pred cCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 33 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 33 l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
++.-.+| ++|+|+++||.+|+++.|.|..|..+|+. ..|+.|++|.-+ ..+.
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~---aVFlkVdVd~c~------------------------~taa 68 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG---AVFLKVDVDECR------------------------GTAA 68 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc---cEEEEEeHHHhh------------------------chhh
Confidence 3344568 99999999999999999999999999964 567777766443 5677
Q ss_pred hcCCCCcceEEEECCCCeEEec
Q 018808 112 LFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+||..+||++++ .+|.-+.+
T Consensus 69 ~~gV~amPTFiff-~ng~kid~ 89 (288)
T KOG0908|consen 69 TNGVNAMPTFIFF-RNGVKIDQ 89 (288)
T ss_pred hcCcccCceEEEE-ecCeEeee
Confidence 8999999999999 77766553
No 240
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.83 E-value=1.1e-08 Score=96.55 Aligned_cols=68 Identities=18% Similarity=0.385 Sum_probs=56.2
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++ ++|+||++||++|+.+.|.|.+++++++..+ +.++.|++|.+.. ...+..|+|
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~-v~~~kVdvD~~~~----------------------~~~~~~~~I 426 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG-VKVAKFRADGDQK----------------------EFAKQELQL 426 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC-cEEEEEECCCCcc----------------------HHHHHHcCC
Confidence 567 9999999999999999999999999997653 8888898886531 123467999
Q ss_pred CCcceEEEECCC
Q 018808 116 MGIPHLVILDEN 127 (350)
Q Consensus 116 ~~~P~~~lid~~ 127 (350)
.++||++++.++
T Consensus 427 ~~~PTii~Fk~g 438 (463)
T TIGR00424 427 GSFPTILFFPKH 438 (463)
T ss_pred CccceEEEEECC
Confidence 999999999433
No 241
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.82 E-value=2.5e-08 Score=68.94 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=48.6
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
+..|+++|||+|+...+.|.++.+... + +++..++.+++ .++++.||+.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~--i~~~~id~~~~-----------------------~~l~~~~~i~~vPt 55 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP--N--ISAEMIDAAEF-----------------------PDLADEYGVMSVPA 55 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC--c--eEEEEEEcccC-----------------------HhHHHHcCCcccCE
Confidence 678999999999999999998866532 2 78888877643 44788999999999
Q ss_pred EEEECCCCCEEec
Q 018808 281 LVIIGPDGKTLHS 293 (350)
Q Consensus 281 ~~lid~~G~i~~~ 293 (350)
+++ +|+++..
T Consensus 56 i~i---~~~~~~~ 65 (67)
T cd02973 56 IVI---NGKVEFV 65 (67)
T ss_pred EEE---CCEEEEe
Confidence 865 3565543
No 242
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.81 E-value=3.7e-08 Score=70.95 Aligned_cols=61 Identities=26% Similarity=0.456 Sum_probs=50.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
+.-||++||++|+...|.|.++++.++. ++.++.|+.+.+. .+++.|++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~------------------------~~~~~~~v~~vPt 56 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENP------------------------QKAMEYGIMAVPA 56 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCH------------------------HHHHHcCCccCCE
Confidence 5679999999999999999999998864 4888888877554 4677899999999
Q ss_pred EEEECCCCeE
Q 018808 121 LVILDENGKV 130 (350)
Q Consensus 121 ~~lid~~G~v 130 (350)
+++ +|+.
T Consensus 57 ~~~---~g~~ 63 (82)
T TIGR00411 57 IVI---NGDV 63 (82)
T ss_pred EEE---CCEE
Confidence 986 5654
No 243
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.81 E-value=2.1e-08 Score=86.37 Aligned_cols=75 Identities=16% Similarity=0.208 Sum_probs=56.3
Q ss_pred CCCEEEEEEec---cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 196 EGKTIGLYFSM---SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 196 ~gk~vlv~f~~---~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
++...++.|.+ +||++|+.+.|.+.++.+++.. +++..+.+|.+ ...+++++
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~----~~i~~v~vd~~---------------------~~~~l~~~ 72 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK----LKLEIYDFDTP---------------------EDKEEAEK 72 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC----ceEEEEecCCc---------------------ccHHHHHH
Confidence 34444555776 9999999999999999988842 55656666522 12568999
Q ss_pred cCCCCccEEEEECCCCCEEe-ccch
Q 018808 273 FELSTLPTLVIIGPDGKTLH-SNVA 296 (350)
Q Consensus 273 ~~v~~~P~~~lid~~G~i~~-~~~~ 296 (350)
|+|.++||++++ ++|+.+. ++.|
T Consensus 73 ~~V~~~Pt~~~f-~~g~~~~~~~~G 96 (215)
T TIGR02187 73 YGVERVPTTIIL-EEGKDGGIRYTG 96 (215)
T ss_pred cCCCccCEEEEE-eCCeeeEEEEee
Confidence 999999999999 5787763 6666
No 244
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.80 E-value=1.7e-08 Score=84.84 Aligned_cols=65 Identities=11% Similarity=0.246 Sum_probs=55.8
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
++ +||+||++||++|+.+.|.|.+|+++|. .+.|+.|+++. ....|++.
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~vkFvkI~ad~---------------------------~~~~~~i~ 151 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DTKFVKIISTQ---------------------------CIPNYPDK 151 (192)
T ss_pred CCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CCEEEEEEhHH---------------------------hHhhCCCC
Confidence 46 9999999999999999999999999986 37888887641 23569999
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
++|+++++ ++|+++.+
T Consensus 152 ~lPTlliy-k~G~~v~~ 167 (192)
T cd02988 152 NLPTILVY-RNGDIVKQ 167 (192)
T ss_pred CCCEEEEE-ECCEEEEE
Confidence 99999999 89998875
No 245
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.79 E-value=4.8e-08 Score=71.54 Aligned_cols=66 Identities=35% Similarity=0.707 Sum_probs=55.9
Q ss_pred c-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCC
Q 018808 39 K-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 117 (350)
Q Consensus 39 k-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 117 (350)
+ ++|.||++||+.|..+.+.+.++.+. . . ++.++.++++... .+++.|++.+
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~-~-~~~~~~i~~~~~~------------------------~~~~~~~v~~ 63 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-Y-P-KVKFVKVDVDENP------------------------ELAEEYGVRS 63 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH-C-C-CceEEEEECCCCh------------------------hHHHhcCccc
Confidence 6 99999999999999999999999887 2 2 5889999887643 6888899999
Q ss_pred cceEEEECCCCeEEe
Q 018808 118 IPHLVILDENGKVLS 132 (350)
Q Consensus 118 ~P~~~lid~~G~v~~ 132 (350)
+|+++++ ++|+++.
T Consensus 64 ~P~~~~~-~~g~~~~ 77 (93)
T cd02947 64 IPTFLFF-KNGKEVD 77 (93)
T ss_pred ccEEEEE-ECCEEEE
Confidence 9999999 5676554
No 246
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.79 E-value=3.8e-08 Score=74.05 Aligned_cols=79 Identities=28% Similarity=0.370 Sum_probs=64.1
Q ss_pred Cc-eecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC-------CHHHHHHhh
Q 018808 180 DF-VISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD-------EEESFKRDL 251 (350)
Q Consensus 180 ~f-~~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~~ 251 (350)
+| ..+.+|+.++++.++||++||.-.|+.|+.-. ....|++++++|+++| ++|+++.+++ +.++.+.++
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehHHhccccCCCHHHHHHHH
Confidence 45 57899999999999999999999999999888 8889999999999998 9999999974 455555555
Q ss_pred cCCCCccccC
Q 018808 252 GSMPWLALPF 261 (350)
Q Consensus 252 ~~~~~~~~~~ 261 (350)
....+.+||+
T Consensus 80 ~~~~~~~F~v 89 (108)
T PF00255_consen 80 KEKFGVTFPV 89 (108)
T ss_dssp CHCHT-SSEE
T ss_pred HhccCCcccc
Confidence 5432234443
No 247
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.77 E-value=3.9e-08 Score=71.92 Aligned_cols=71 Identities=11% Similarity=0.034 Sum_probs=58.1
Q ss_pred cccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 193 SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 193 ~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
.++++++-+..|+++||++|+...+.+.++.+.+.+ +.+..+..++. .+++++
T Consensus 8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~----i~~~~vd~~~~-----------------------~e~a~~ 60 (89)
T cd03026 8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN----IEHEMIDGALF-----------------------QDEVEE 60 (89)
T ss_pred HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC----ceEEEEEhHhC-----------------------HHHHHH
Confidence 467788899999999999999999999998877642 77777776643 457899
Q ss_pred cCCCCccEEEEECCCCCEEec
Q 018808 273 FELSTLPTLVIIGPDGKTLHS 293 (350)
Q Consensus 273 ~~v~~~P~~~lid~~G~i~~~ 293 (350)
|||.++|++++ +|+++.+
T Consensus 61 ~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 61 RGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred cCCccCCEEEE---CCEEEEe
Confidence 99999999975 6888775
No 248
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=7e-08 Score=75.43 Aligned_cols=115 Identities=23% Similarity=0.317 Sum_probs=83.9
Q ss_pred ccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCHHHHHh
Q 018808 18 SARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAFKG 88 (350)
Q Consensus 18 ~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~~~~~~ 88 (350)
+.-+|.+ +.+|+.++|++++|| ++|.-.|+.|..-.+ ...|+.||++|+++| +.+++..|+ .+.+++.+
T Consensus 4 ~~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~G-f~VLgFPcNQF~~QEPg~~eEI~~ 81 (162)
T COG0386 4 SIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKG-FEVLGFPCNQFGGQEPGSDEEIAK 81 (162)
T ss_pred ccccceeeccCCCCccHHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCC-cEEEeccccccccCCCCCHHHHHH
Confidence 4567877 689999999999999 999999999998884 557999999999997 999999986 36778999
Q ss_pred HHhcCCCcccccCC------hhhH---HHHHhhc-------CCCCcceEEEECCCCeEEecC
Q 018808 89 YFSKMPWLAVPFSD------SETR---DKLDELF-------KVMGIPHLVILDENGKVLSDG 134 (350)
Q Consensus 89 ~~~~~~~~~~~~~~------~~~~---~~l~~~~-------~v~~~P~~~lid~~G~v~~~~ 134 (350)
|+..-=...||..+ .+.+ +.|...- .|.+==+-+|||++|+|+.|.
T Consensus 82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf 143 (162)
T COG0386 82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRF 143 (162)
T ss_pred HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEee
Confidence 98753223333221 1111 1222222 123333889999999999984
No 249
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.75 E-value=5.6e-08 Score=73.31 Aligned_cols=68 Identities=35% Similarity=0.534 Sum_probs=58.4
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
++++++.|+++||++|..+.+.+.+++++++++ +.++.|+.|+. ..+++.||+.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~-----------------------~~~~~~~~i~ 65 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDF-----------------------GRHLEYFGLK 65 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhh-----------------------HHHHHHcCCC
Confidence 789999999999999999999999999999865 88988877642 4588999999
Q ss_pred --CccEEEEECCC-CCE
Q 018808 277 --TLPTLVIIGPD-GKT 290 (350)
Q Consensus 277 --~~P~~~lid~~-G~i 290 (350)
++|++++++.. |+.
T Consensus 66 ~~~~P~~~~~~~~~~~k 82 (103)
T cd02982 66 EEDLPVIAIINLSDGKK 82 (103)
T ss_pred hhhCCEEEEEecccccc
Confidence 99999999663 543
No 250
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.3e-07 Score=73.70 Aligned_cols=116 Identities=22% Similarity=0.200 Sum_probs=92.2
Q ss_pred hhcCccCCcee-ccCCceeecCCCCCc--EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHH
Q 018808 14 LLSSSARDFLI-RSNGDQVKLDSLKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYF 90 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~~~l~~~~gk--~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~ 90 (350)
-+|+++|+|++ ..+.+.+++.++.|| ++..|-+-.-|.|......|++...++. +..++.|+.| -+-...+|+
T Consensus 19 ~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~---~~~Vl~IS~D-LPFAq~RfC 94 (158)
T COG2077 19 QVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG---NTVVLCISMD-LPFAQKRFC 94 (158)
T ss_pred ccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC---CcEEEEEeCC-ChhHHhhhh
Confidence 45999999988 689999999999999 5555666678999999999999888876 4789999987 445678999
Q ss_pred hcCCCcccccCChhhHHHHHhhcCCC--Cc-------ceEEEECCCCeEEec
Q 018808 91 SKMPWLAVPFSDSETRDKLDELFKVM--GI-------PHLVILDENGKVLSD 133 (350)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~l~~~~~v~--~~-------P~~~lid~~G~v~~~ 133 (350)
...+..+.-..+.-....+.+.||+. .- -..+++|.+|+|+|.
T Consensus 95 ~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~ 146 (158)
T COG2077 95 GAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYS 146 (158)
T ss_pred hhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEE
Confidence 98887765544444445788999962 23 378999999999985
No 251
>PLN02309 5'-adenylylsulfate reductase
Probab=98.74 E-value=3.5e-08 Score=93.05 Aligned_cols=66 Identities=17% Similarity=0.391 Sum_probs=55.6
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh-hcC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE-LFK 114 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ 114 (350)
.++ ++|+||++||++|+.+.|.|.++.+++... ++.++.++++.... .++. .|+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~-----------------------~la~~~~~ 419 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQK-----------------------EFAKQELQ 419 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcch-----------------------HHHHhhCC
Confidence 567 999999999999999999999999999765 48899998873321 5665 699
Q ss_pred CCCcceEEEECC
Q 018808 115 VMGIPHLVILDE 126 (350)
Q Consensus 115 v~~~P~~~lid~ 126 (350)
|.++||++++.+
T Consensus 420 I~~~PTil~f~~ 431 (457)
T PLN02309 420 LGSFPTILLFPK 431 (457)
T ss_pred CceeeEEEEEeC
Confidence 999999999943
No 252
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.73 E-value=6.9e-08 Score=94.68 Aligned_cols=75 Identities=24% Similarity=0.502 Sum_probs=59.0
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHH
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKL 109 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (350)
+..+|| ++|+||++||++|+.+.+.. .++.++++ ++.++.++++++.+ .++++
T Consensus 470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~--------------------~~~~l 526 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNA--------------------EDVAL 526 (571)
T ss_pred HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCCh--------------------hhHHH
Confidence 345689 99999999999999987764 56666664 37777787765422 23478
Q ss_pred HhhcCCCCcceEEEECCCCeEE
Q 018808 110 DELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 110 ~~~~~v~~~P~~~lid~~G~v~ 131 (350)
.++|++.++|+++++|++|+++
T Consensus 527 ~~~~~v~g~Pt~~~~~~~G~~i 548 (571)
T PRK00293 527 LKHYNVLGLPTILFFDAQGQEI 548 (571)
T ss_pred HHHcCCCCCCEEEEECCCCCCc
Confidence 8999999999999999999874
No 253
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.69 E-value=1.2e-07 Score=65.55 Aligned_cols=62 Identities=23% Similarity=0.305 Sum_probs=49.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|+++||++|....+.|.++.+... .+.+..++.+... ++++.|++.++|+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~------------------------~l~~~~~i~~vPt 55 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFP------------------------DLADEYGVMSVPA 55 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCH------------------------hHHHHcCCcccCE
Confidence 678999999999999999998866542 4788888776553 5778899999999
Q ss_pred EEEECCCCeEEe
Q 018808 121 LVILDENGKVLS 132 (350)
Q Consensus 121 ~~lid~~G~v~~ 132 (350)
+++ +|++++
T Consensus 56 i~i---~~~~~~ 64 (67)
T cd02973 56 IVI---NGKVEF 64 (67)
T ss_pred EEE---CCEEEE
Confidence 876 456655
No 254
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=9.4e-08 Score=75.71 Aligned_cols=119 Identities=21% Similarity=0.296 Sum_probs=86.5
Q ss_pred cCccCCcee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-------CCHHHH
Q 018808 16 SSSARDFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-------EDDEAF 86 (350)
Q Consensus 16 g~~~p~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-------~~~~~~ 86 (350)
-.+.-+|+. +.+|+.++|+.++|| ++|.-.|+.|..-......|..|+++|++++ +++++..|+ ...+++
T Consensus 11 ~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G-l~ILaFPCNQFg~QEp~~n~Ei 89 (171)
T KOG1651|consen 11 KGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG-LEILAFPCNQFGNQEPGSNEEI 89 (171)
T ss_pred hcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC-eEEEEeccccccCcCCCCcHHH
Confidence 455678987 789999999999999 9999999999999977889999999999997 999999986 245677
Q ss_pred HhHHhcCCCcccccCChh-----hHHHHHhhc----------CCCCcceEEEECCCCeEEecCC
Q 018808 87 KGYFSKMPWLAVPFSDSE-----TRDKLDELF----------KVMGIPHLVILDENGKVLSDGG 135 (350)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~-----~~~~l~~~~----------~v~~~P~~~lid~~G~v~~~~~ 135 (350)
..++.......++..+.- ....+.+.+ .|.+==+-+|+|++|.++.|.+
T Consensus 90 ~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 90 LNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred HHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeC
Confidence 777764332222222110 111222211 2233338899999999999854
No 255
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.66 E-value=1.3e-07 Score=67.05 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=47.2
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
-|.||++||++|..+.|.+.++.++++. ++.++.|+ +. ..+..|++.++|+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~---~~------------------------~~a~~~~v~~vPt 52 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT---DM------------------------NEILEAGVTATPG 52 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC---CH------------------------HHHHHcCCCcCCE
Confidence 4789999999999999999999999864 36665554 22 2245699999999
Q ss_pred EEEECCCCeEEe
Q 018808 121 LVILDENGKVLS 132 (350)
Q Consensus 121 ~~lid~~G~v~~ 132 (350)
+++ ||+++.
T Consensus 53 i~i---~G~~~~ 61 (76)
T TIGR00412 53 VAV---DGELVI 61 (76)
T ss_pred EEE---CCEEEE
Confidence 999 787764
No 256
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=1.4e-07 Score=74.36 Aligned_cols=114 Identities=21% Similarity=0.343 Sum_probs=83.4
Q ss_pred hhhhcCccCCcee-ccCCceeecCCCCCc--EEEEEecC-CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHH
Q 018808 12 QSLLSSSARDFLI-RSNGDQVKLDSLKGK--IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFK 87 (350)
Q Consensus 12 ~~~~g~~~p~f~~-~~~g~~~~l~~~~gk--~~v~F~~~-~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~ 87 (350)
.--+|+.+|+|++ +.+|+.++|.++.|+ ++++||-. ..|-|....=.|.+-|+++++.+ .++++++.|+. ...+
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~-aeV~GlS~D~s-~sqK 139 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG-AEVIGLSGDDS-ASQK 139 (211)
T ss_pred eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC-ceEEeeccCch-HHHH
Confidence 3456999999988 789999999999998 55555543 45789888888999999998775 89999998754 4455
Q ss_pred hHHhcCCCcccccCChhhHHHHHhhcCCCCcc-------eEEEECCCCe
Q 018808 88 GYFSKMPWLAVPFSDSETRDKLDELFKVMGIP-------HLVILDENGK 129 (350)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P-------~~~lid~~G~ 129 (350)
.|..++...-... .|..+++.+.+|+...| .++++++.|.
T Consensus 140 aF~sKqnlPYhLL--SDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~ 186 (211)
T KOG0855|consen 140 AFASKQNLPYHLL--SDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGV 186 (211)
T ss_pred HhhhhccCCeeee--cCcchhHHHHhCCCCCCCCCcccceEEEEecCCe
Confidence 6655554322223 34445899999987655 6777766653
No 257
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.64 E-value=2.4e-07 Score=70.67 Aligned_cols=73 Identities=12% Similarity=0.208 Sum_probs=50.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
+.+.+||.|+|+| |+|.+ .|...+++.++......+.+.-|.+++-. ...+.+++++|+|
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~------------------~~~~~~L~~~y~I 76 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYG------------------EKLNMELGERYKL 76 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEeccccc------------------chhhHHHHHHhCC
Confidence 4578999999955 44444 36666776666543333778888775310 0122679999999
Q ss_pred C--CccEEEEECCCCC
Q 018808 276 S--TLPTLVIIGPDGK 289 (350)
Q Consensus 276 ~--~~P~~~lid~~G~ 289 (350)
. ++||++++ ++|.
T Consensus 77 ~~~gyPTl~lF-~~g~ 91 (116)
T cd03007 77 DKESYPVIYLF-HGGD 91 (116)
T ss_pred CcCCCCEEEEE-eCCC
Confidence 9 99999999 6664
No 258
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.61 E-value=2.1e-07 Score=79.70 Aligned_cols=86 Identities=20% Similarity=0.275 Sum_probs=66.5
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
.+.+++=|++|+.+.|++|..+.|.|..+.++++ +.|+.||+|...- ..||.... +..+++++
T Consensus 117 ~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-----~~v~~vs~DG~~~-----------~~fp~~~~-~~g~~~~l 179 (215)
T PF13728_consen 117 QLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG-----FSVIPVSLDGRPI-----------PSFPNPRP-DPGQAKRL 179 (215)
T ss_pred HHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-----CEEEEEecCCCCC-----------cCCCCCCC-CHHHHHHc
Confidence 3446678999999999999999999999999984 9999999995321 23333322 45688899
Q ss_pred CCCCccEEEEECCCC-CEEeccch
Q 018808 274 ELSTLPTLVIIGPDG-KTLHSNVA 296 (350)
Q Consensus 274 ~v~~~P~~~lid~~G-~i~~~~~~ 296 (350)
||..+|++||+++++ ++.-...|
T Consensus 180 ~v~~~Pal~Lv~~~~~~~~pv~~G 203 (215)
T PF13728_consen 180 GVKVTPALFLVNPNTKKWYPVSQG 203 (215)
T ss_pred CCCcCCEEEEEECCCCeEEEEeee
Confidence 999999999999988 44433444
No 259
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.61 E-value=2e-07 Score=68.12 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=58.0
Q ss_pred cCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 33 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 33 l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
++++++. .+..|+++||++|....+.+.++.+.+. ++.+..++.+... +++.
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~------------------------e~a~ 59 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQ------------------------DEVE 59 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCH------------------------HHHH
Confidence 3467788 8888999999999999999999887764 3778888776554 6888
Q ss_pred hcCCCCcceEEEECCCCeEEec
Q 018808 112 LFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.|+|.++|++++ +|+++..
T Consensus 60 ~~~V~~vPt~vi---dG~~~~~ 78 (89)
T cd03026 60 ERGIMSVPAIFL---NGELFGF 78 (89)
T ss_pred HcCCccCCEEEE---CCEEEEe
Confidence 999999999975 6888774
No 260
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.60 E-value=1.7e-06 Score=85.22 Aligned_cols=176 Identities=15% Similarity=0.180 Sum_probs=107.3
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhh
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (350)
+.+++. .++.|+...|..|......|.++. .+.++ +.+......++ .++++.
T Consensus 362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~--i~~~~~~~~~~------------------------~~~~~~ 414 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEK--LNSEAVNRGEE------------------------PESETL 414 (555)
T ss_pred HhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCc--EEEEEeccccc------------------------hhhHhh
Confidence 346667 788888888999988877777765 44443 55544443333 267888
Q ss_pred cCCCCcceEEEECCCCe---EEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCceecCCCce
Q 018808 113 FKVMGIPHLVILDENGK---VLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISSDGRK 189 (350)
Q Consensus 113 ~~v~~~P~~~lid~~G~---v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f~~~~~g~~ 189 (350)
|++...|++.+++.+|+ +.+. |. |.- ..+..|+...... +...+. ++.+.
T Consensus 415 ~~v~~~P~~~i~~~~~~~~~i~f~---------g~---P~G-~Ef~s~i~~i~~~----------~~~~~~----l~~~~ 467 (555)
T TIGR03143 415 PKITKLPTVALLDDDGNYTGLKFH---------GV---PSG-HELNSFILALYNA----------AGPGQP----LGEEL 467 (555)
T ss_pred cCCCcCCEEEEEeCCCcccceEEE---------ec---Ccc-HhHHHHHHHHHHh----------cCCCCC----CCHHH
Confidence 99999999999976653 4332 21 222 2233333221111 000000 01111
Q ss_pred e-eccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHH
Q 018808 190 I-SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 268 (350)
Q Consensus 190 v-~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (350)
. .+..+.++..+-.|.+++||+|+.....++++..+.++ +..-.|....- .+
T Consensus 468 ~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~----i~~~~i~~~~~-----------------------~~ 520 (555)
T TIGR03143 468 LEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN----VEAEMIDVSHF-----------------------PD 520 (555)
T ss_pred HHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC----ceEEEEECccc-----------------------HH
Confidence 1 22345566667788999999999988888888777542 44444433321 56
Q ss_pred HHHHcCCCCccEEEEECCCCCEEec
Q 018808 269 LARYFELSTLPTLVIIGPDGKTLHS 293 (350)
Q Consensus 269 ~~~~~~v~~~P~~~lid~~G~i~~~ 293 (350)
++++|+|.++|++++ ||+++..
T Consensus 521 ~~~~~~v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 521 LKDEYGIMSVPAIVV---DDQQVYF 542 (555)
T ss_pred HHHhCCceecCEEEE---CCEEEEe
Confidence 889999999999887 4566544
No 261
>PHA02125 thioredoxin-like protein
Probab=98.59 E-value=2.4e-07 Score=65.58 Aligned_cols=57 Identities=32% Similarity=0.640 Sum_probs=42.6
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
.++.||++||++|+.+.|.|.++ .+.++.|+.+... ++++.|++.++|
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~~~--------~~~~~~vd~~~~~------------------------~l~~~~~v~~~P 48 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLANV--------EYTYVDVDTDEGV------------------------ELTAKHHIRSLP 48 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHHHH--------hheEEeeeCCCCH------------------------HHHHHcCCceeC
Confidence 37899999999999999988654 1345556554432 689999999999
Q ss_pred eEEEECCCCeEEe
Q 018808 120 HLVILDENGKVLS 132 (350)
Q Consensus 120 ~~~lid~~G~v~~ 132 (350)
+++ +|+.+.
T Consensus 49 T~~----~g~~~~ 57 (75)
T PHA02125 49 TLV----NTSTLD 57 (75)
T ss_pred eEE----CCEEEE
Confidence 987 455443
No 262
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.55 E-value=5.5e-07 Score=70.01 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=47.7
Q ss_pred CCCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHH
Q 018808 35 SLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (350)
Q Consensus 35 ~~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (350)
.-+|| ++|+|++.||++|+.+...+ .++.+..++ ++.+|.+..|.+.. ...
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~-----------------------~~~ 74 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDK-----------------------NLS 74 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCC-----------------------CcC
Confidence 34678 99999999999999887765 244444433 35555555543321 000
Q ss_pred hhcCCCCcceEEEECCCCeEEec
Q 018808 111 ELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 111 ~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
..+ .++|+++++|++|+++.+
T Consensus 75 -~~g-~~vPtivFld~~g~vi~~ 95 (130)
T cd02960 75 -PDG-QYVPRIMFVDPSLTVRAD 95 (130)
T ss_pred -ccC-cccCeEEEECCCCCCccc
Confidence 022 468999999999998875
No 263
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.54 E-value=3.2e-07 Score=69.16 Aligned_cols=63 Identities=17% Similarity=0.275 Sum_probs=55.7
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
|+ +++.|+++||++|..+.+.|.+++++++. ++.++.|+++... .++..|++.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~------------------------~~~~~~~i~ 65 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFG------------------------RHLEYFGLK 65 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhH------------------------HHHHHcCCC
Confidence 77 99999999999999999999999999975 5889988776543 688899999
Q ss_pred --CcceEEEECC
Q 018808 117 --GIPHLVILDE 126 (350)
Q Consensus 117 --~~P~~~lid~ 126 (350)
++|++++++.
T Consensus 66 ~~~~P~~~~~~~ 77 (103)
T cd02982 66 EEDLPVIAIINL 77 (103)
T ss_pred hhhCCEEEEEec
Confidence 9999999975
No 264
>smart00594 UAS UAS domain.
Probab=98.49 E-value=4.3e-07 Score=70.78 Aligned_cols=82 Identities=13% Similarity=0.297 Sum_probs=56.9
Q ss_pred eccccCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHH
Q 018808 191 SVSDLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE 267 (350)
Q Consensus 191 ~l~~~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (350)
..+.-++|.++|+|+++||++|..+...+ .++.+.+.. . +-++.++++.+ ...
T Consensus 21 ~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~--fv~~~~dv~~~---------------------eg~ 76 (122)
T smart00594 21 QEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-N--FIFWQVDVDTS---------------------EGQ 76 (122)
T ss_pred HHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-C--EEEEEecCCCh---------------------hHH
Confidence 33445689999999999999999987532 123333332 2 55555554432 226
Q ss_pred HHHHHcCCCCccEEEEECCCC-----CEEeccch
Q 018808 268 KLARYFELSTLPTLVIIGPDG-----KTLHSNVA 296 (350)
Q Consensus 268 ~~~~~~~v~~~P~~~lid~~G-----~i~~~~~~ 296 (350)
++++.|++.++|+++++|++| +++.+.-|
T Consensus 77 ~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G 110 (122)
T smart00594 77 RVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEG 110 (122)
T ss_pred HHHHhcCcCCCCEEEEEecCCCceeEEEeccccC
Confidence 789999999999999999998 35555544
No 265
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.48 E-value=5.3e-07 Score=78.19 Aligned_cols=78 Identities=18% Similarity=0.271 Sum_probs=63.6
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
...|+|+|+|.||+..+...|.+.+.+..+++...+-++|.-.+|.+.+ ..++.+|.|.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e---------------------~~ia~ky~I~ 71 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE---------------------DDIADKYHIN 71 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh---------------------hHHhhhhccc
Confidence 4689999999999999999999999998888775445566656554332 5689999999
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
.+||+-|+ ++|.+..+...
T Consensus 72 KyPTlKvf-rnG~~~~rEYR 90 (375)
T KOG0912|consen 72 KYPTLKVF-RNGEMMKREYR 90 (375)
T ss_pred cCceeeee-eccchhhhhhc
Confidence 99999999 99998886543
No 266
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.47 E-value=5.1e-07 Score=78.31 Aligned_cols=88 Identities=27% Similarity=0.496 Sum_probs=66.5
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 118 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 118 (350)
++|.|||.||+.++...|.+.+.+++++++. +-++|+-.+|++.+ ..|+.+|.|..+
T Consensus 16 vfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e----------------------~~ia~ky~I~Ky 73 (375)
T KOG0912|consen 16 VFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE----------------------DDIADKYHINKY 73 (375)
T ss_pred EeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh----------------------hHHhhhhccccC
Confidence 9999999999999999999999999987653 34566666666644 379999999999
Q ss_pred ceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHH
Q 018808 119 PHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 160 (350)
Q Consensus 119 P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~ 160 (350)
||+-++ .+|.+.. ++|.+. .+.+.+.++++.
T Consensus 74 PTlKvf-rnG~~~~-------rEYRg~---RsVeaL~efi~k 104 (375)
T KOG0912|consen 74 PTLKVF-RNGEMMK-------REYRGQ---RSVEALIEFIEK 104 (375)
T ss_pred ceeeee-eccchhh-------hhhccc---hhHHHHHHHHHH
Confidence 999999 7887665 234332 355555555543
No 267
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.44 E-value=1.3e-06 Score=65.67 Aligned_cols=59 Identities=29% Similarity=0.461 Sum_probs=53.8
Q ss_pred Ccee-ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC
Q 018808 21 DFLI-RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81 (350)
Q Consensus 21 ~f~~-~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~ 81 (350)
+|++ +.+|+.++|+.++|| ++|.-.|+.|+.-. ....|++|+++|++++ +++++..++.
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g-l~ILaFPcnq 63 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG-LEILAFPCNQ 63 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT-EEEEEEEBST
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC-eEEEeeehHH
Confidence 6777 689999999999999 99999999999988 7889999999999886 9999999864
No 268
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.44 E-value=7.3e-07 Score=64.25 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=33.1
Q ss_pred cCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCC
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDD 242 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~ 242 (350)
..||+++|+|++.||++|+.+...+ .++.+.+.++ +..+.|..+.
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~~ 62 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVDD 62 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETTT
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcCC
Confidence 3589999999999999999998766 3344434433 7777777653
No 269
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.43 E-value=1.4e-06 Score=75.87 Aligned_cols=86 Identities=16% Similarity=0.218 Sum_probs=66.3
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
.+.+++-|++|+.+.|++|.++.|.|+.+.++++ +.++.||+|.... ..||.... +..+++++
T Consensus 147 ~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-----i~v~~VS~DG~~~-----------p~fp~~~~-d~gqa~~l 209 (256)
T TIGR02739 147 QLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-----ISVIPISVDGTLI-----------PGLPNSRS-DSGQAQHL 209 (256)
T ss_pred HHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCCC-----------CCCCCccC-ChHHHHhc
Confidence 3455688999999999999999999999999986 8899999995321 23443322 35578899
Q ss_pred CCCCccEEEEECCCC-CEEeccch
Q 018808 274 ELSTLPTLVIIGPDG-KTLHSNVA 296 (350)
Q Consensus 274 ~v~~~P~~~lid~~G-~i~~~~~~ 296 (350)
|+..+|+++|++++. +..-...|
T Consensus 210 ~v~~~Pal~Lv~~~t~~~~pv~~G 233 (256)
T TIGR02739 210 GVKYFPALYLVNPKSQKMSPLAYG 233 (256)
T ss_pred CCccCceEEEEECCCCcEEEEeec
Confidence 999999999999994 44434444
No 270
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.43 E-value=3.3e-07 Score=71.83 Aligned_cols=76 Identities=21% Similarity=0.231 Sum_probs=47.6
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH-
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY- 272 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 272 (350)
.+..+.-++.|..+|||.|...+|.|.++.+..+. +++=.+..|++.+ +..+
T Consensus 38 ~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~----i~~~~i~rd~~~e-----------------------l~~~~ 90 (129)
T PF14595_consen 38 SIQKPYNILVITETWCGDCARNVPVLAKIAEANPN----IEVRIILRDENKE-----------------------LMDQY 90 (129)
T ss_dssp T--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT----EEEEEE-HHHHHH-----------------------HTTTT
T ss_pred hcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC----CeEEEEEecCChh-----------------------HHHHH
Confidence 34556788999999999999999999999988642 5555555553322 2332
Q ss_pred --cCCCCccEEEEECCCCCEEeccch
Q 018808 273 --FELSTLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 273 --~~v~~~P~~~lid~~G~i~~~~~~ 296 (350)
.|...+|+++++|.+|+.+.++..
T Consensus 91 lt~g~~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 91 LTNGGRSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp TT-SS--SSEEEEE-TT--EEEEEES
T ss_pred HhCCCeecCEEEEEcCCCCEeEEEcC
Confidence 467889999999999999988765
No 271
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.1e-06 Score=67.47 Aligned_cols=121 Identities=19% Similarity=0.300 Sum_probs=95.3
Q ss_pred hcccccCCceecCCCceeeccccCCCEEEEEEe--ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC--CHHHHH
Q 018808 173 VLTSHSRDFVISSDGRKISVSDLEGKTIGLYFS--MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD--EEESFK 248 (350)
Q Consensus 173 ~~~~~~p~f~~~~~g~~v~l~~~~gk~vlv~f~--~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~--~~~~~~ 248 (350)
.+|..+|+|..+..-..+++.++.|.-+.|-|. +...|.|..++..+..++.+|..++ ++.++.|+|+ +...|.
T Consensus 7 ~lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn--vKlialS~d~vesH~~Wi 84 (224)
T KOG0854|consen 7 RLGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN--VKLIALSVDDVESHKDWI 84 (224)
T ss_pred cccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC--ceEEEeehhhHHHHHHHH
Confidence 368889999766666679999999987777777 4588999999999999999999998 9999999994 444454
Q ss_pred Hhh----cCCC-CccccCCchhHHHHHHHcCC--------C----CccEEEEECCCCCEEeccc
Q 018808 249 RDL----GSMP-WLALPFKDKSREKLARYFEL--------S----TLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 249 ~~~----~~~~-~~~~~~~~~~~~~~~~~~~v--------~----~~P~~~lid~~G~i~~~~~ 295 (350)
+-+ ...+ -+.+|+..|..++++-.|++ . ..-.+++||++-++.-...
T Consensus 85 ~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~l 148 (224)
T KOG0854|consen 85 KDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFL 148 (224)
T ss_pred HHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEE
Confidence 333 3222 37888899999999988875 1 2457899999999886654
No 272
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.42 E-value=1.7e-06 Score=66.60 Aligned_cols=76 Identities=21% Similarity=0.249 Sum_probs=54.8
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHH
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKL 109 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (350)
+.-++| ++|+|+++||+.|..+.... .++.+.+++ ++.++.++.++.. ...+
T Consensus 13 Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e----------------------~~~~ 68 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSE----------------------GQRF 68 (114)
T ss_pred HHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCcc----------------------HHHH
Confidence 344678 99999999999999887643 345555543 2445555444321 1368
Q ss_pred HhhcCCCCcceEEEECC-CCeEEec
Q 018808 110 DELFKVMGIPHLVILDE-NGKVLSD 133 (350)
Q Consensus 110 ~~~~~v~~~P~~~lid~-~G~v~~~ 133 (350)
+..|++.++|+++++|+ +|+++.+
T Consensus 69 ~~~~~~~~~P~~~~i~~~~g~~l~~ 93 (114)
T cd02958 69 LQSYKVDKYPHIAIIDPRTGEVLKV 93 (114)
T ss_pred HHHhCccCCCeEEEEeCccCcEeEE
Confidence 88999999999999999 8988874
No 273
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=2.7e-06 Score=67.93 Aligned_cols=117 Identities=23% Similarity=0.339 Sum_probs=87.4
Q ss_pred hhcCccCCceec--cCCc--eeecCCCCCc-EEEEEec-CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC--HHH
Q 018808 14 LLSSSARDFLIR--SNGD--QVKLDSLKGK-IGLYFSA-SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--DEA 85 (350)
Q Consensus 14 ~~g~~~p~f~~~--~~g~--~~~l~~~~gk-~~v~F~~-~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~--~~~ 85 (350)
.+..++|+|.-. .+|. .++|++++|| +++.||. .+--.|..+.-.+.+.+.+|++.+ -+++++++|+. .-.
T Consensus 5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n-~eVig~S~DS~fshlA 83 (196)
T KOG0852|consen 5 VVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN-TEVLGISTDSVFSHLA 83 (196)
T ss_pred ccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC-CeEEEEeccchhhhhh
Confidence 446677999443 4554 7999999999 9999985 456689999999999999998874 99999999864 234
Q ss_pred HHhHHhcCC---CcccccCChhhHHHHHhhcCCC------CcceEEEECCCCeEEe
Q 018808 86 FKGYFSKMP---WLAVPFSDSETRDKLDELFKVM------GIPHLVILDENGKVLS 132 (350)
Q Consensus 86 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~ 132 (350)
|...-.+.+ -..+|.. +|.+.++++.||+. .+--++|+|++|.+..
T Consensus 84 W~ntprk~gGlg~~~iPll-sD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~ 138 (196)
T KOG0852|consen 84 WINTPRKQGGLGPLNIPLL-SDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQ 138 (196)
T ss_pred HhcCchhhCCcCcccccee-eccchhhHHhcCceecCCCcceeeeEEEccccceEE
Confidence 444444433 2446654 56677999999983 4558899999998865
No 274
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.35 E-value=2.6e-06 Score=73.87 Aligned_cols=86 Identities=12% Similarity=0.206 Sum_probs=65.7
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
++.+++-|++|+.+.||+|.++.|.|+.+.++++ +.|+.||+|.... ..||.... +...++++
T Consensus 140 ~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-----~~v~~VS~DG~~~-----------p~fp~~~~-d~gqa~~l 202 (248)
T PRK13703 140 KLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-----LSVIPVSVDGVIN-----------PLLPDSRT-DQGQAQRL 202 (248)
T ss_pred HHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCCC-----------CCCCCCcc-ChhHHHhc
Confidence 3445678899999999999999999999999986 8899999995321 23444322 23456899
Q ss_pred CCCCccEEEEECCCC-CEEeccch
Q 018808 274 ELSTLPTLVIIGPDG-KTLHSNVA 296 (350)
Q Consensus 274 ~v~~~P~~~lid~~G-~i~~~~~~ 296 (350)
|+..+|+++|++++. +..-...|
T Consensus 203 ~v~~~PAl~Lv~~~t~~~~pv~~G 226 (248)
T PRK13703 203 GVKYFPALMLVDPKSGSVRPLSYG 226 (248)
T ss_pred CCcccceEEEEECCCCcEEEEeec
Confidence 999999999999996 55444445
No 275
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.33 E-value=6.7e-07 Score=77.35 Aligned_cols=68 Identities=25% Similarity=0.461 Sum_probs=51.5
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 118 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 118 (350)
++|+||++||.||++.-|.+.+.-..+++-+ .+++-. +|.++ -..++..|+++++
T Consensus 46 W~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGK--lDaT~----------------------f~aiAnefgiqGY 101 (468)
T KOG4277|consen 46 WFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGK--LDATR----------------------FPAIANEFGIQGY 101 (468)
T ss_pred EEEEeechhhhhcccccchhHHhCcchhhcCCceeecc--ccccc----------------------chhhHhhhccCCC
Confidence 9999999999999999999999888887654 233322 33332 1378899999999
Q ss_pred ceEEEECCCCeEEe
Q 018808 119 PHLVILDENGKVLS 132 (350)
Q Consensus 119 P~~~lid~~G~v~~ 132 (350)
||+.++ ++|-++.
T Consensus 102 PTIk~~-kgd~a~d 114 (468)
T KOG4277|consen 102 PTIKFF-KGDHAID 114 (468)
T ss_pred ceEEEe-cCCeeee
Confidence 999999 5554443
No 276
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.30 E-value=2.2e-06 Score=73.45 Aligned_cols=82 Identities=28% Similarity=0.327 Sum_probs=64.5
Q ss_pred cCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 33 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 33 l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
+..+.++ -+++|+.+.|++|..+.|.|..+.+++ .+.++.|++|...- ..++-... +..+++
T Consensus 115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y----g~~v~~vs~DG~~~-----------~~fp~~~~--~~g~~~ 177 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY----GFSVIPVSLDGRPI-----------PSFPNPRP--DPGQAK 177 (215)
T ss_pred HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh----CCEEEEEecCCCCC-----------cCCCCCCC--CHHHHH
Confidence 4456677 899999999999999999999999998 38999999986532 22332222 346888
Q ss_pred hcCCCCcceEEEECCCCeEE
Q 018808 112 LFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~v~ 131 (350)
.+++..+|+++|+++++...
T Consensus 178 ~l~v~~~Pal~Lv~~~~~~~ 197 (215)
T PF13728_consen 178 RLGVKVTPALFLVNPNTKKW 197 (215)
T ss_pred HcCCCcCCEEEEEECCCCeE
Confidence 99999999999999887433
No 277
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.29 E-value=2.5e-06 Score=65.05 Aligned_cols=73 Identities=33% Similarity=0.513 Sum_probs=55.0
Q ss_pred eccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHH
Q 018808 191 SVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 270 (350)
Q Consensus 191 ~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (350)
....+.++++++.||++||++|+.+.|.+.++.+++... +.++.++..+ ....+.
T Consensus 26 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~i~~~~----------------------~~~~~~ 80 (127)
T COG0526 26 SLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGD---VEVVAVNVDD----------------------ENPDLA 80 (127)
T ss_pred ehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcCC---cEEEEEECCC----------------------CChHHH
Confidence 333444889999999999999999999999999999762 7888888751 114456
Q ss_pred HHcC--CCCccEEEEECCCCC
Q 018808 271 RYFE--LSTLPTLVIIGPDGK 289 (350)
Q Consensus 271 ~~~~--v~~~P~~~lid~~G~ 289 (350)
..|+ +..+|+++++ .+|+
T Consensus 81 ~~~~~~~~~~p~~~~~-~~~~ 100 (127)
T COG0526 81 AEFGVAVRSIPTLLLF-KDGK 100 (127)
T ss_pred HHHhhhhccCCeEEEE-eCcc
Confidence 6666 7788988765 4443
No 278
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=98.29 E-value=9.8e-07 Score=76.36 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=56.6
Q ss_pred CEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCC
Q 018808 198 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 277 (350)
Q Consensus 198 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 277 (350)
..++|.|||+||..|++..|.+.++-.++++.|..+++-...+. .| ..++..|||++
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT----------------~f-------~aiAnefgiqG 100 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDAT----------------RF-------PAIANEFGIQG 100 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccc----------------cc-------hhhHhhhccCC
Confidence 48999999999999999999999998888887744444332221 11 45899999999
Q ss_pred ccEEEEECCCCCEEeccc
Q 018808 278 LPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 278 ~P~~~lid~~G~i~~~~~ 295 (350)
+||+.++ ++|..+....
T Consensus 101 YPTIk~~-kgd~a~dYRG 117 (468)
T KOG4277|consen 101 YPTIKFF-KGDHAIDYRG 117 (468)
T ss_pred CceEEEe-cCCeeeecCC
Confidence 9999999 6666554433
No 279
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.28 E-value=4.6e-06 Score=56.03 Aligned_cols=63 Identities=24% Similarity=0.400 Sum_probs=48.4
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.||++||++|....+.+.++ +....+ +.++.++++...... .....+++..+|+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~P~ 56 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKG--VKFEAVDVDEDPALE--------------------KELKRYGVGGVPT 56 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCC--cEEEEEEcCCChHHh--------------------hHHHhCCCccccE
Confidence 4789999999999999999988 333444 999999988543321 1145788999999
Q ss_pred EEEECCC
Q 018808 281 LVIIGPD 287 (350)
Q Consensus 281 ~~lid~~ 287 (350)
+++++++
T Consensus 57 ~~~~~~~ 63 (69)
T cd01659 57 LVVFGPG 63 (69)
T ss_pred EEEEeCC
Confidence 9999776
No 280
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.25 E-value=3.2e-06 Score=64.55 Aligned_cols=66 Identities=21% Similarity=0.235 Sum_probs=44.5
Q ss_pred CCc-EEEEEec--CCCh---hhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHH
Q 018808 37 KGK-IGLYFSA--SWCG---PCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (350)
Q Consensus 37 ~gk-~~v~F~~--~~C~---~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (350)
+.+ ++|.|++ +||. +|..+.|.+..... .+.+..|.+++..+ ..+..|+
T Consensus 17 ~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~-------------------~~~~~L~ 71 (116)
T cd03007 17 KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGE-------------------KLNMELG 71 (116)
T ss_pred cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccc-------------------hhhHHHH
Confidence 445 9999999 7777 55555554432211 36677777754211 1234899
Q ss_pred hhcCCC--CcceEEEECCCC
Q 018808 111 ELFKVM--GIPHLVILDENG 128 (350)
Q Consensus 111 ~~~~v~--~~P~~~lid~~G 128 (350)
..|+|. ++||+.++ ++|
T Consensus 72 ~~y~I~~~gyPTl~lF-~~g 90 (116)
T cd03007 72 ERYKLDKESYPVIYLF-HGG 90 (116)
T ss_pred HHhCCCcCCCCEEEEE-eCC
Confidence 999999 99999999 455
No 281
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=1.1e-06 Score=82.79 Aligned_cols=66 Identities=27% Similarity=0.484 Sum_probs=55.2
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGI 118 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~ 118 (350)
.+|.||++||++|+++.|.++.+++.+.+.. -+.+..|+|.+. .+..+|+.|+|+++
T Consensus 60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~----------------------~N~~lCRef~V~~~ 117 (606)
T KOG1731|consen 60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADE----------------------ENVKLCREFSVSGY 117 (606)
T ss_pred HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccch----------------------hhhhhHhhcCCCCC
Confidence 8999999999999999999999999998764 355555666433 34589999999999
Q ss_pred ceEEEECCC
Q 018808 119 PHLVILDEN 127 (350)
Q Consensus 119 P~~~lid~~ 127 (350)
|++..+.++
T Consensus 118 Ptlryf~~~ 126 (606)
T KOG1731|consen 118 PTLRYFPPD 126 (606)
T ss_pred ceeeecCCc
Confidence 999999766
No 282
>smart00594 UAS UAS domain.
Probab=98.21 E-value=1.1e-05 Score=62.91 Aligned_cols=74 Identities=18% Similarity=0.264 Sum_probs=53.2
Q ss_pred eecCCCCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhH
Q 018808 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETR 106 (350)
Q Consensus 31 ~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (350)
+..+.-++| ++|+|+++||+.|..+...+ .++.+.+++ ++.++.+++++.. .
T Consensus 20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~e----------------------g 75 (122)
T smart00594 20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSE----------------------G 75 (122)
T ss_pred HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChh----------------------H
Confidence 344445788 99999999999999887764 344455543 2444445444332 1
Q ss_pred HHHHhhcCCCCcceEEEECCCC
Q 018808 107 DKLDELFKVMGIPHLVILDENG 128 (350)
Q Consensus 107 ~~l~~~~~v~~~P~~~lid~~G 128 (350)
..++..|+++++|++++++++|
T Consensus 76 ~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 76 QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred HHHHHhcCcCCCCEEEEEecCC
Confidence 3789999999999999999997
No 283
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6.6e-06 Score=77.29 Aligned_cols=66 Identities=20% Similarity=0.352 Sum_probs=57.2
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
.++.++|.||++||++|+++.|.+.++...+++. +.+..|.++.. .++++.|+|
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~---~~~~~vd~~~~-----------------------~~~~~~y~i 99 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK---VKIGAVDCDEH-----------------------KDLCEKYGI 99 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc---eEEEEeCchhh-----------------------HHHHHhcCC
Confidence 3568999999999999999999999999999874 77777766633 679999999
Q ss_pred CCccEEEEECCC
Q 018808 276 STLPTLVIIGPD 287 (350)
Q Consensus 276 ~~~P~~~lid~~ 287 (350)
.++||+.++.+.
T Consensus 100 ~gfPtl~~f~~~ 111 (383)
T KOG0191|consen 100 QGFPTLKVFRPG 111 (383)
T ss_pred ccCcEEEEEcCC
Confidence 999999999665
No 284
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.17 E-value=4.9e-06 Score=72.57 Aligned_cols=83 Identities=18% Similarity=0.234 Sum_probs=65.0
Q ss_pred ecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHH
Q 018808 32 KLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD 110 (350)
Q Consensus 32 ~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (350)
.++.+.++ -+++||.+.|++|..+.|.|+.+.++| .+.++.|++|...- ..+|....+ ..++
T Consensus 144 ~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y----gi~v~~VS~DG~~~-----------p~fp~~~~d--~gqa 206 (256)
T TIGR02739 144 AIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY----GISVIPISVDGTLI-----------PGLPNSRSD--SGQA 206 (256)
T ss_pred HHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh----CCeEEEEecCCCCC-----------CCCCCccCC--hHHH
Confidence 34456677 899999999999999999999999998 38999999987631 223333233 3678
Q ss_pred hhcCCCCcceEEEECCCCeEE
Q 018808 111 ELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 111 ~~~~v~~~P~~~lid~~G~v~ 131 (350)
..+++..+|+++|++++.+..
T Consensus 207 ~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 207 QHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred HhcCCccCceEEEEECCCCcE
Confidence 889999999999999885433
No 285
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.16 E-value=5.5e-06 Score=59.65 Aligned_cols=45 Identities=31% Similarity=0.727 Sum_probs=32.5
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDED 82 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~ 82 (350)
-+|| ++|+|+++||+.|+.+...+ .++.+.+.+ ++..+.|..+..
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~ 63 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDE 63 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTH
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCC
Confidence 4678 99999999999999887776 344443543 467777776443
No 286
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.12 E-value=6.2e-06 Score=71.49 Aligned_cols=80 Identities=16% Similarity=0.167 Sum_probs=63.1
Q ss_pred cCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHh
Q 018808 33 LDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDE 111 (350)
Q Consensus 33 l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 111 (350)
++++.++ -+++||.+.|++|..+.|.|+.+.+++ .+.++.|++|.... ..+|....+. ..+.
T Consensus 138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y----g~~v~~VS~DG~~~-----------p~fp~~~~d~--gqa~ 200 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY----GLSVIPVSVDGVIN-----------PLLPDSRTDQ--GQAQ 200 (248)
T ss_pred HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh----CCeEEEEecCCCCC-----------CCCCCCccCh--hHHH
Confidence 4456667 899999999999999999999999998 48899999987531 2343333333 4567
Q ss_pred hcCCCCcceEEEECCCCe
Q 018808 112 LFKVMGIPHLVILDENGK 129 (350)
Q Consensus 112 ~~~v~~~P~~~lid~~G~ 129 (350)
.+++..+|.++|++++..
T Consensus 201 ~l~v~~~PAl~Lv~~~t~ 218 (248)
T PRK13703 201 RLGVKYFPALMLVDPKSG 218 (248)
T ss_pred hcCCcccceEEEEECCCC
Confidence 899999999999998863
No 287
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.06 E-value=2.8e-05 Score=52.04 Aligned_cols=63 Identities=33% Similarity=0.531 Sum_probs=47.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.||.+||++|....+.+.++ ..... ++.++.++++...+.. .....+++..+|+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~P~ 56 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNK-GVKFEAVDVDEDPALE---------------------KELKRYGVGGVPT 56 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCC-CcEEEEEEcCCChHHh---------------------hHHHhCCCccccE
Confidence 4789999999999999999988 33333 5889999887665311 1134688899999
Q ss_pred EEEECCC
Q 018808 121 LVILDEN 127 (350)
Q Consensus 121 ~~lid~~ 127 (350)
+++++++
T Consensus 57 ~~~~~~~ 63 (69)
T cd01659 57 LVVFGPG 63 (69)
T ss_pred EEEEeCC
Confidence 9999765
No 288
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=2.5e-05 Score=62.46 Aligned_cols=116 Identities=18% Similarity=0.353 Sum_probs=87.5
Q ss_pred hcCccCCceeccCCceeecCCCCCc-EEEEE--ecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC--HH----H
Q 018808 15 LSSSARDFLIRSNGDQVKLDSLKGK-IGLYF--SASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED--DE----A 85 (350)
Q Consensus 15 ~g~~~p~f~~~~~g~~~~l~~~~gk-~~v~F--~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~--~~----~ 85 (350)
+|+.+|+|..+.+-..+.+.|+.|. +.|-| -+...|.|..++..++.+.-+|.+++ ++.+++++|+- .. +
T Consensus 8 lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn-vKlialS~d~vesH~~Wi~D 86 (224)
T KOG0854|consen 8 LGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN-VKLIALSVDDVESHKDWIKD 86 (224)
T ss_pred ccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC-ceEEEeehhhHHHHHHHHHH
Confidence 6999999999998899999999998 55555 45678999999999999999999985 99999999853 22 3
Q ss_pred HHhHHhcCCC-cccccCChhhHHHHHhhcCC--------CC----cceEEEECCCCeEEe
Q 018808 86 FKGYFSKMPW-LAVPFSDSETRDKLDELFKV--------MG----IPHLVILDENGKVLS 132 (350)
Q Consensus 86 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~v--------~~----~P~~~lid~~G~v~~ 132 (350)
++.+.+..+. ..+|+. .|.+++++-.|+. .+ .-.++++|++-++.-
T Consensus 87 Iks~~~~~~~~~~yPII-aD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirL 145 (224)
T KOG0854|consen 87 IKSYAKVKNHSVPYPII-ADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRL 145 (224)
T ss_pred HHHHHhccCCCCCCCee-cCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEE
Confidence 4444454443 444544 5666788877764 12 347889999887654
No 289
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.02 E-value=9.5e-05 Score=57.65 Aligned_cols=73 Identities=10% Similarity=0.150 Sum_probs=59.7
Q ss_pred EEEEEEecc--CCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 199 TIGLYFSMS--SYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 199 ~vlv~f~~~--~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
..+|+|-+. .+|-+....-.|.++.++|.+.. +.++.|+.|.+ .+++.+|||.
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~--v~~akVDiD~~-----------------------~~LA~~fgV~ 90 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT--WQVAIADLEQS-----------------------EAIGDRFGVF 90 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCc--eEEEEEECCCC-----------------------HHHHHHcCCc
Confidence 455555433 67888888889999999996433 88999998865 5699999999
Q ss_pred CccEEEEECCCCCEEeccchh
Q 018808 277 TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~~ 297 (350)
++||++++ ++|+++.+..|.
T Consensus 91 siPTLl~F-kdGk~v~~i~G~ 110 (132)
T PRK11509 91 RFPATLVF-TGGNYRGVLNGI 110 (132)
T ss_pred cCCEEEEE-ECCEEEEEEeCc
Confidence 99999999 999999998883
No 290
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.00 E-value=2e-05 Score=63.65 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=43.0
Q ss_pred eccccCCCEEEEEEeccCCccChhhHHH-H--HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHH
Q 018808 191 SVSDLEGKTIGLYFSMSSYKASAEFTPR-L--VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE 267 (350)
Q Consensus 191 ~l~~~~gk~vlv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (350)
..+.-.+|+++|.++++||.+|..|... + .++.+-++.. +--|.|..+..+. +...+. .
T Consensus 31 ~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~---FI~VkvDree~Pd-id~~y~--------------~ 92 (163)
T PF03190_consen 31 EKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN---FIPVKVDREERPD-IDKIYM--------------N 92 (163)
T ss_dssp HHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH----EEEEEETTT-HH-HHHHHH--------------H
T ss_pred HHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC---EEEEEeccccCcc-HHHHHH--------------H
Confidence 3344468999999999999999988741 1 1233333332 4444444443222 211111 1
Q ss_pred HHHHHcCCCCccEEEEECCCCCEEecc
Q 018808 268 KLARYFELSTLPTLVIIGPDGKTLHSN 294 (350)
Q Consensus 268 ~~~~~~~v~~~P~~~lid~~G~i~~~~ 294 (350)
......|..++|++++++|+|+.+...
T Consensus 93 ~~~~~~~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 93 AVQAMSGSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp HHHHHHS---SSEEEEE-TTS-EEEEE
T ss_pred HHHHhcCCCCCCceEEECCCCCeeeee
Confidence 112223788999999999999999764
No 291
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.99 E-value=3.5e-05 Score=58.57 Aligned_cols=69 Identities=39% Similarity=0.699 Sum_probs=51.9
Q ss_pred eeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC-CCHHHHHhHHhcCCCcccccCChhhHH
Q 018808 30 QVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD-EDDEAFKGYFSKMPWLAVPFSDSETRD 107 (350)
Q Consensus 30 ~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (350)
........++ +++.||++||++|+.+.|.+.++.+++.. .+.++.++.. ...
T Consensus 24 ~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~------------------------ 77 (127)
T COG0526 24 PLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENP------------------------ 77 (127)
T ss_pred ceehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCCh------------------------
Confidence 3344444578 99999999999999999999999999975 3778888875 222
Q ss_pred HHHhhcC--CCCcceEEEE
Q 018808 108 KLDELFK--VMGIPHLVIL 124 (350)
Q Consensus 108 ~l~~~~~--v~~~P~~~li 124 (350)
.+...|+ +..+|++++.
T Consensus 78 ~~~~~~~~~~~~~p~~~~~ 96 (127)
T COG0526 78 DLAAEFGVAVRSIPTLLLF 96 (127)
T ss_pred HHHHHHhhhhccCCeEEEE
Confidence 4555566 6777887755
No 292
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=5.8e-06 Score=77.94 Aligned_cols=69 Identities=28% Similarity=0.325 Sum_probs=59.7
Q ss_pred CEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCC
Q 018808 198 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 277 (350)
Q Consensus 198 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 277 (350)
+..+|.|+++||+.|+.+.|.++++++.+.....-+.|.+|++-+.. +..+++.|+|..
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~---------------------N~~lCRef~V~~ 116 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE---------------------NVKLCREFSVSG 116 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh---------------------hhhhHhhcCCCC
Confidence 47899999999999999999999999999887666788888875432 267999999999
Q ss_pred ccEEEEECCC
Q 018808 278 LPTLVIIGPD 287 (350)
Q Consensus 278 ~P~~~lid~~ 287 (350)
+|++..+-++
T Consensus 117 ~Ptlryf~~~ 126 (606)
T KOG1731|consen 117 YPTLRYFPPD 126 (606)
T ss_pred CceeeecCCc
Confidence 9999999777
No 293
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.94 E-value=2e-05 Score=75.13 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=55.8
Q ss_pred CCCEEEEEEeccCCccChhhHHHHH-HHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLV-EVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE 274 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~-~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (350)
++|+|+++|+|.||-.|+.+.+..- +.....+-.+ +..+-++... ..+.+.++.++|+
T Consensus 473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~--~vlLqaDvT~-------------------~~p~~~~lLk~~~ 531 (569)
T COG4232 473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD--VVLLQADVTA-------------------NDPAITALLKRLG 531 (569)
T ss_pred CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC--eEEEEeeecC-------------------CCHHHHHHHHHcC
Confidence 3469999999999999999887544 3444444444 5555554432 2234578899999
Q ss_pred CCCccEEEEECCCCCEEec
Q 018808 275 LSTLPTLVIIGPDGKTLHS 293 (350)
Q Consensus 275 v~~~P~~~lid~~G~i~~~ 293 (350)
+.+.|++++++++|+-...
T Consensus 532 ~~G~P~~~ff~~~g~e~~~ 550 (569)
T COG4232 532 VFGVPTYLFFGPQGSEPEI 550 (569)
T ss_pred CCCCCEEEEECCCCCcCcC
Confidence 9999999999999975544
No 294
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=9.1e-05 Score=58.23 Aligned_cols=86 Identities=23% Similarity=0.433 Sum_probs=61.7
Q ss_pred CCCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCC---hhhHH
Q 018808 35 SLKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD---SETRD 107 (350)
Q Consensus 35 ~~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 107 (350)
...+| .++.|-+..|++|.++-..+ .++++-+.. .+.++.++...... ..+...+ ..+.+
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skp-----------v~f~~g~kee~~s~~ 105 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKP-----------VLFKVGDKEEKMSTE 105 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcc-----------eEeecCceeeeecHH
Confidence 34678 99999999999998876665 466666655 37777777644321 1111111 22356
Q ss_pred HHHhhcCCCCcceEEEECCCCeEEec
Q 018808 108 KLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 108 ~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
+|++.|+++++|+++++|.+|+.+..
T Consensus 106 ELa~kf~vrstPtfvFfdk~Gk~Il~ 131 (182)
T COG2143 106 ELAQKFAVRSTPTFVFFDKTGKTILE 131 (182)
T ss_pred HHHHHhccccCceEEEEcCCCCEEEe
Confidence 89999999999999999999987763
No 295
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=2e-05 Score=65.97 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=54.2
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
+++ +++.||+.||..|.++...+..+.+.++ ++.++.+..+... .++..+.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~------------------------eis~~~~v 68 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFP------------------------EISNLIAV 68 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhh------------------------HHHHHHHH
Confidence 667 9999999999999999999988888772 4777777655443 78899999
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
...|++..+ ..|..+.
T Consensus 69 ~~vp~~~~~-~~~~~v~ 84 (227)
T KOG0911|consen 69 EAVPYFVFF-FLGEKVD 84 (227)
T ss_pred hcCceeeee-ecchhhh
Confidence 999999887 4555443
No 296
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.87 E-value=1.9e-05 Score=61.82 Aligned_cols=76 Identities=32% Similarity=0.591 Sum_probs=44.7
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhh
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 112 (350)
+.+.++ .++.|..+|||.|++..|.|.++.+..+ ++.+-.+..|.+.+...++ +.
T Consensus 37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~-------------------lt-- 92 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQY-------------------LT-- 92 (129)
T ss_dssp HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTT-------------------TT--
T ss_pred HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHH-------------------Hh--
Confidence 345566 8999999999999999999999988753 3666666555444311111 11
Q ss_pred cCCCCcceEEEECCCCeEEec
Q 018808 113 FKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 113 ~~v~~~P~~~lid~~G~v~~~ 133 (350)
.|..++|+++++|.+|+.+.+
T Consensus 93 ~g~~~IP~~I~~d~~~~~lg~ 113 (129)
T PF14595_consen 93 NGGRSIPTFIFLDKDGKELGR 113 (129)
T ss_dssp -SS--SSEEEEE-TT--EEEE
T ss_pred CCCeecCEEEEEcCCCCEeEE
Confidence 577899999999999988765
No 297
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.86 E-value=0.00059 Score=60.06 Aligned_cols=92 Identities=15% Similarity=0.164 Sum_probs=55.8
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeC---C-CC------------H-HHHHHhhcCCCC-
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL---D-DE------------E-ESFKRDLGSMPW- 256 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~---d-~~------------~-~~~~~~~~~~~~- 256 (350)
-.+|.+++.|.-+.||+|+++...+.++.+. | .+++..+.+ . ++ + ..+..+...+..
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~ 189 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS----G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKL 189 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc----C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhcc
Confidence 3568899999999999999999888776543 1 144443332 1 11 1 112222111110
Q ss_pred -cccc--------CCchhHHHHHHHcCCCCccEEEEECCCCCEE
Q 018808 257 -LALP--------FKDKSREKLARYFELSTLPTLVIIGPDGKTL 291 (350)
Q Consensus 257 -~~~~--------~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~ 291 (350)
+.-+ ...+...++.+.+|++++|++++.|.+|++.
T Consensus 190 ~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~ 233 (251)
T PRK11657 190 GLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQ 233 (251)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 0000 0112345788999999999999999999753
No 298
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.85 E-value=3.4e-05 Score=65.72 Aligned_cols=119 Identities=15% Similarity=0.239 Sum_probs=85.8
Q ss_pred hhhcccccCCc-eecCCCce-eeccccC--CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC----
Q 018808 171 RSVLTSHSRDF-VISSDGRK-ISVSDLE--GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD---- 242 (350)
Q Consensus 171 ~~~~~~~~p~f-~~~~~g~~-v~l~~~~--gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~---- 242 (350)
....|..||+. +.+.+|+. .++-|+. ++++||+|.+-.||+=..-+..++++.++|.+. ++++.|.+..
T Consensus 72 ~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~---adFl~VYI~EAHps 148 (237)
T PF00837_consen 72 EAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV---ADFLIVYIEEAHPS 148 (237)
T ss_pred ceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh---hheehhhHhhhCcC
Confidence 34668899999 78999988 8998884 589999999999999999999999999999976 5666666531
Q ss_pred ----------------CHHH---HHHhhcCCCCccccCCchh-HHHHHHHcCCCCcc-EEEEECCCCCEEeccch
Q 018808 243 ----------------EEES---FKRDLGSMPWLALPFKDKS-REKLARYFELSTLP-TLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 243 ----------------~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~P-~~~lid~~G~i~~~~~~ 296 (350)
+.++ ..+.+.+.. ..+|+..|. +....+.||.. | .++|| .+|+|+++...
T Consensus 149 DgW~~~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~YgA~--PeRlyIi-~~gkv~Y~Gg~ 219 (237)
T PF00837_consen 149 DGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAYGAL--PERLYII-QDGKVVYKGGP 219 (237)
T ss_pred CCccCCCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHhCCC--cceEEEE-ECCEEEEeCCC
Confidence 1111 111122222 456665554 56677788764 5 45666 79999998753
No 299
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.84 E-value=7.6e-05 Score=51.98 Aligned_cols=59 Identities=17% Similarity=0.246 Sum_probs=42.2
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
+..|+++|||+|+...+.|.+ .+ +.+..++++++.+. ..++.+.+++.++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KG--IAFEEIDVEKDSAA-------------------REEVLKVLGQRGVPV 53 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CC--CeEEEEeccCCHHH-------------------HHHHHHHhCCCcccE
Confidence 467999999999998777654 23 67777777654332 134677889999999
Q ss_pred EEEECCCCCE
Q 018808 281 LVIIGPDGKT 290 (350)
Q Consensus 281 ~~lid~~G~i 290 (350)
+++- |++
T Consensus 54 ~~~~---~~~ 60 (74)
T TIGR02196 54 IVIG---HKI 60 (74)
T ss_pred EEEC---CEE
Confidence 8763 554
No 300
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.81 E-value=6.4e-05 Score=53.05 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=40.3
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH-HcCCCCcc
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR-YFELSTLP 279 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~P 279 (350)
+..||++|||+|++..+.|.++ + +.+-.++++.+... ...+.+ .+++..+|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~--~~~~~idi~~~~~~-------------------~~~~~~~~~~~~~vP 53 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------G--AAYEWVDIEEDEGA-------------------ADRVVSVNNGNMTVP 53 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C--CceEEEeCcCCHhH-------------------HHHHHHHhCCCceeC
Confidence 5679999999999988877544 2 33444556543221 012222 25888999
Q ss_pred EEEEECCCCCEEeccc
Q 018808 280 TLVIIGPDGKTLHSNV 295 (350)
Q Consensus 280 ~~~lid~~G~i~~~~~ 295 (350)
++ ++ .+|+++....
T Consensus 54 ~i-~~-~~g~~l~~~~ 67 (77)
T TIGR02200 54 TV-KF-ADGSFLTNPS 67 (77)
T ss_pred EE-EE-CCCeEecCCC
Confidence 86 46 5677765443
No 301
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.81 E-value=0.0012 Score=57.32 Aligned_cols=88 Identities=10% Similarity=0.176 Sum_probs=54.8
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEE--eCCC--C---------------HHHHHHhhcCCC-
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI--SLDD--E---------------EESFKRDLGSMP- 255 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v--~~d~--~---------------~~~~~~~~~~~~- 255 (350)
.||.+++.|..+.||+|+++.+.+.++. +.+ +.+..+ .... + ...+.+......
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~----~~~--v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYN----ALG--ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHh----cCC--eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 4688999999999999999998887663 334 555443 3311 1 111222222111
Q ss_pred -CccccCCchhHHHHHHHcCCCCccEEEEECCCCCEE
Q 018808 256 -WLALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291 (350)
Q Consensus 256 -~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~ 291 (350)
............++++++||.++|+++ + ++|+++
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPtiv-~-~~G~~~ 214 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPAIV-L-SNGTLV 214 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccEEE-E-cCCeEe
Confidence 011222334567899999999999988 4 578776
No 302
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.78 E-value=5.1e-05 Score=54.59 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=42.1
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|+++|||+|....+.|.++. ... .+.++-|+.+.+..+.+ ..+.+.+|+..+|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~~~~------------------~~l~~~~g~~~vP~ 57 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGSEIQ------------------DYLEEITGQRTVPN 57 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChHHHH------------------HHHHHHhCCCCCCe
Confidence 46799999999999999988875 222 26777776654333221 33566788999999
Q ss_pred EEE
Q 018808 281 LVI 283 (350)
Q Consensus 281 ~~l 283 (350)
+++
T Consensus 58 v~i 60 (84)
T TIGR02180 58 IFI 60 (84)
T ss_pred EEE
Confidence 854
No 303
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00039 Score=54.74 Aligned_cols=94 Identities=22% Similarity=0.294 Sum_probs=63.0
Q ss_pred ccCCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHH
Q 018808 194 DLEGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLA 270 (350)
Q Consensus 194 ~~~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (350)
...+|++++.|....|++|-.+-..+ .++++-+... +.++.+....+.... -+.... ...-...+++
T Consensus 39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~skpv~-f~~g~k------ee~~s~~ELa 108 (182)
T COG2143 39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYSKPVL-FKVGDK------EEKMSTEELA 108 (182)
T ss_pred CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccCcceE-eecCce------eeeecHHHHH
Confidence 34679999999999999998876544 3355555543 667766665332110 000000 0112246899
Q ss_pred HHcCCCCccEEEEECCCCCEEeccchh
Q 018808 271 RYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 271 ~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
+.|+|+++|+++++|.+|+-+...-|.
T Consensus 109 ~kf~vrstPtfvFfdk~Gk~Il~lPGY 135 (182)
T COG2143 109 QKFAVRSTPTFVFFDKTGKTILELPGY 135 (182)
T ss_pred HHhccccCceEEEEcCCCCEEEecCCC
Confidence 999999999999999999988776664
No 304
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.74 E-value=0.00027 Score=54.32 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=56.1
Q ss_pred ccCCCEEEEEEecc----CCccChhhH--HHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHH
Q 018808 194 DLEGKTIGLYFSMS----SYKASAEFT--PRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSRE 267 (350)
Q Consensus 194 ~~~gk~vlv~f~~~----~C~~C~~~~--~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (350)
.-++|.++|+++++ ||.+|+..+ |.+.+.. .. . +-+.+.+++..+ ..
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~l---n~-~--fv~w~~dv~~~e---------------------g~ 66 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYI---NT-R--MLFWACSVAKPE---------------------GY 66 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHH---Hc-C--EEEEEEecCChH---------------------HH
Confidence 34679999999999 889998777 3444443 22 2 666666655332 26
Q ss_pred HHHHHcCCCCccEEEEE---CCCCCEEeccch
Q 018808 268 KLARYFELSTLPTLVII---GPDGKTLHSNVA 296 (350)
Q Consensus 268 ~~~~~~~v~~~P~~~li---d~~G~i~~~~~~ 296 (350)
+++..+++.++|++.++ +.+.+++.+..|
T Consensus 67 ~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G 98 (116)
T cd02991 67 RVSQALRERTYPFLAMIMLKDNRMTIVGRLEG 98 (116)
T ss_pred HHHHHhCCCCCCEEEEEEecCCceEEEEEEeC
Confidence 79999999999999999 666677888777
No 305
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.72 E-value=0.00018 Score=55.17 Aligned_cols=78 Identities=17% Similarity=0.296 Sum_probs=48.6
Q ss_pred CCCEEEEEEec-------cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHH
Q 018808 196 EGKTIGLYFSM-------SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 268 (350)
Q Consensus 196 ~gk~vlv~f~~-------~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (350)
.++.++|.|.+ +|||.|....|.+++......+. ..+|.|.+. +...|+. ++..
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~---~~lv~v~VG-~r~~Wkd---------------p~n~ 78 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPEN---ARLVYVEVG-DRPEWKD---------------PNNP 78 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STT---EEEEEEE----HHHHC----------------TTSH
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCC---ceEEEEEcC-CHHHhCC---------------CCCC
Confidence 35677777764 49999999999999988885543 778877775 3333321 1123
Q ss_pred HHH--HcCCCCccEEEEECCCCCEEe
Q 018808 269 LAR--YFELSTLPTLVIIGPDGKTLH 292 (350)
Q Consensus 269 ~~~--~~~v~~~P~~~lid~~G~i~~ 292 (350)
+.. .+++.++||++-.+..++++.
T Consensus 79 fR~~p~~~l~~IPTLi~~~~~~rL~e 104 (119)
T PF06110_consen 79 FRTDPDLKLKGIPTLIRWETGERLVE 104 (119)
T ss_dssp HHH--CC---SSSEEEECTSS-EEEH
T ss_pred ceEcceeeeeecceEEEECCCCccch
Confidence 444 689999999999977666443
No 306
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.65 E-value=0.00016 Score=51.96 Aligned_cols=65 Identities=28% Similarity=0.525 Sum_probs=45.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|+++|||+|....+.|.++. .+. .+.++.|+.+.+.+.+ ...+.+.+++.++|+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~~~~~-------------------~~~l~~~~g~~~vP~ 57 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSNGSEI-------------------QDYLEEITGQRTVPN 57 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCChHHH-------------------HHHHHHHhCCCCCCe
Confidence 46799999999999999888765 221 3677777766544322 224666788899999
Q ss_pred EEEECCCCeEE
Q 018808 121 LVILDENGKVL 131 (350)
Q Consensus 121 ~~lid~~G~v~ 131 (350)
+++ +|+.+
T Consensus 58 v~i---~g~~i 65 (84)
T TIGR02180 58 IFI---NGKFI 65 (84)
T ss_pred EEE---CCEEE
Confidence 865 46554
No 307
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.62 E-value=0.00025 Score=49.29 Aligned_cols=55 Identities=20% Similarity=0.538 Sum_probs=40.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
+..|+++||++|+...+.|.+ . .+.+..++++.+.+ ....+.+.+++.++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~-~i~~~~vdi~~~~~--------------------~~~~~~~~~~~~~vP~ 53 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------K-GIAFEEIDVEKDSA--------------------AREEVLKVLGQRGVPV 53 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------C-CCeEEEEeccCCHH--------------------HHHHHHHHhCCCcccE
Confidence 567999999999998877654 2 36777787776543 1235677789999999
Q ss_pred EEE
Q 018808 121 LVI 123 (350)
Q Consensus 121 ~~l 123 (350)
+++
T Consensus 54 ~~~ 56 (74)
T TIGR02196 54 IVI 56 (74)
T ss_pred EEE
Confidence 887
No 308
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.59 E-value=0.0057 Score=59.93 Aligned_cols=64 Identities=11% Similarity=0.024 Sum_probs=47.2
Q ss_pred cccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 193 SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 193 ~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
..+.++.-+..|..+.||+|+.....++++....+ .+..-.|.... ..+++.+
T Consensus 112 ~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~----~i~~~~id~~~-----------------------~~~~~~~ 164 (517)
T PRK15317 112 KALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP----NITHTMIDGAL-----------------------FQDEVEA 164 (517)
T ss_pred HhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC----CceEEEEEchh-----------------------CHhHHHh
Confidence 34456677889999999999988888888876543 25555553221 1568899
Q ss_pred cCCCCccEEEE
Q 018808 273 FELSTLPTLVI 283 (350)
Q Consensus 273 ~~v~~~P~~~l 283 (350)
|++.++|++++
T Consensus 165 ~~v~~VP~~~i 175 (517)
T PRK15317 165 RNIMAVPTVFL 175 (517)
T ss_pred cCCcccCEEEE
Confidence 99999999976
No 309
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00018 Score=59.84 Aligned_cols=104 Identities=19% Similarity=0.299 Sum_probs=70.7
Q ss_pred CCceeecCCCCCc---EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCCh
Q 018808 27 NGDQVKLDSLKGK---IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDS 103 (350)
Q Consensus 27 ~g~~~~l~~~~gk---~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~ 103 (350)
+++.....--+.| ++|.|++.|.|.|+++.|.+.+|..+|...+ +++-.|.+..=.
T Consensus 131 ~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~-lkFGkvDiGrfp-------------------- 189 (265)
T KOG0914|consen 131 NMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL-LKFGKVDIGRFP-------------------- 189 (265)
T ss_pred chhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCC-CcccceeeccCc--------------------
Confidence 5555555444444 9999999999999999999999999998774 777777654222
Q ss_pred hhHHHHHhhcCC------CCcceEEEECCCCeEEecCCccceecc-cCcCCCCChHHHHHHH
Q 018808 104 ETRDKLDELFKV------MGIPHLVILDENGKVLSDGGVEIIREY-GVEGYPFTVERIKEMK 158 (350)
Q Consensus 104 ~~~~~l~~~~~v------~~~P~~~lid~~G~v~~~~~~~~~~~~-~~~~~p~~~~~i~~l~ 158 (350)
..+.+|+| +..||++++ .+|+-+.+- ..+... ...+++.+.+.+-...
T Consensus 190 ----d~a~kfris~s~~srQLPT~ilF-q~gkE~~Rr--P~vd~~gra~s~~fSeenv~~~F 244 (265)
T KOG0914|consen 190 ----DVAAKFRISLSPGSRQLPTYILF-QKGKEVSRR--PDVDVKGRAVSFPFSEENVCQHF 244 (265)
T ss_pred ----ChHHheeeccCcccccCCeEEEE-ccchhhhcC--ccccccCCcccccccHHHHHHHh
Confidence 23444554 467899999 788766552 222222 3445777777765444
No 310
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.57 E-value=0.00044 Score=59.00 Aligned_cols=118 Identities=19% Similarity=0.373 Sum_probs=79.4
Q ss_pred hhcCccCCcee-ccCCce-eecCCC-CC-c-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEEC----C----
Q 018808 14 LLSSSARDFLI-RSNGDQ-VKLDSL-KG-K-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG----D---- 80 (350)
Q Consensus 14 ~~g~~~p~f~~-~~~g~~-~~l~~~-~g-k-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~----d---- 80 (350)
.+|..|||..+ +.+|++ .++.|+ +| + +||+|-+--||+=+.-.+.++++.++|++.-++-+|.|.- |
T Consensus 74 ~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHpsDgW~~ 153 (237)
T PF00837_consen 74 KLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHPSDGWAF 153 (237)
T ss_pred eCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCcCCCccC
Confidence 46999999955 888888 999998 55 4 9999999889999988999999999998743344444421 1
Q ss_pred ----------CCHH---H-HHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEecCC
Q 018808 81 ----------EDDE---A-FKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSDGG 135 (350)
Q Consensus 81 ----------~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~~ 135 (350)
.+.+ . .+.+.... ...++.-....+...+.||+..- .++|+ .+|+++|.++
T Consensus 154 ~~~~~~i~qh~sledR~~aA~~l~~~~--~~~pi~vD~mdN~~~~~YgA~Pe-RlyIi-~~gkv~Y~Gg 218 (237)
T PF00837_consen 154 GNNPYEIPQHRSLEDRLRAAKLLKEEF--PQCPIVVDTMDNNFNKAYGALPE-RLYII-QDGKVVYKGG 218 (237)
T ss_pred CCCceeecCCCCHHHHHHHHHHHHhhC--CCCCEEEEccCCHHHHHhCCCcc-eEEEE-ECCEEEEeCC
Confidence 0111 1 22222223 23443333344577788887543 45555 6999999865
No 311
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.57 E-value=0.00016 Score=69.20 Aligned_cols=73 Identities=22% Similarity=0.387 Sum_probs=52.0
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHH-HHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhc
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPIL-AEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF 113 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l-~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 113 (350)
-++| ++|+||++||-.|+.+.+.. .+-....+-. ++..+-.+...+.. .+.++-+.|
T Consensus 472 ~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p--------------------~~~~lLk~~ 530 (569)
T COG4232 472 AKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDP--------------------AITALLKRL 530 (569)
T ss_pred CCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCH--------------------HHHHHHHHc
Confidence 3567 99999999999999887774 3333333333 35565555443322 234777889
Q ss_pred CCCCcceEEEECCCCe
Q 018808 114 KVMGIPHLVILDENGK 129 (350)
Q Consensus 114 ~v~~~P~~~lid~~G~ 129 (350)
++-+.|++++++++|+
T Consensus 531 ~~~G~P~~~ff~~~g~ 546 (569)
T COG4232 531 GVFGVPTYLFFGPQGS 546 (569)
T ss_pred CCCCCCEEEEECCCCC
Confidence 9999999999998886
No 312
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.56 E-value=0.00023 Score=50.11 Aligned_cols=63 Identities=22% Similarity=0.469 Sum_probs=40.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHH-hhcCCCCcc
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLD-ELFKVMGIP 119 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~v~~~P 119 (350)
+..||++||++|+...+.|.++ .+.+-.++++.+.+. ...+. ..++..++|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~--------~~~~~~idi~~~~~~--------------------~~~~~~~~~~~~~vP 53 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL--------GAAYEWVDIEEDEGA--------------------ADRVVSVNNGNMTVP 53 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCceEEEeCcCCHhH--------------------HHHHHHHhCCCceeC
Confidence 6789999999999988877654 134445666655321 11222 235888999
Q ss_pred eEEEECCCCeEEec
Q 018808 120 HLVILDENGKVLSD 133 (350)
Q Consensus 120 ~~~lid~~G~v~~~ 133 (350)
+++ + .+|+++..
T Consensus 54 ~i~-~-~~g~~l~~ 65 (77)
T TIGR02200 54 TVK-F-ADGSFLTN 65 (77)
T ss_pred EEE-E-CCCeEecC
Confidence 874 4 57776654
No 313
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.56 E-value=0.0022 Score=54.40 Aligned_cols=90 Identities=14% Similarity=0.225 Sum_probs=55.6
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC---CH-------------HHHHHhhcCCCC--
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD---EE-------------ESFKRDLGSMPW-- 256 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~---~~-------------~~~~~~~~~~~~-- 256 (350)
-.++..++.|..+.||+|+++.+.+.+ ...+-++.++.++... +. +.|.++......
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~-----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~ 149 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEKELKP-----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPP 149 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHHHHhh-----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCC
Confidence 347899999999999999999998876 1222225555555432 11 122222221110
Q ss_pred --ccccCCchhHHHHHHHcCCCCccEEEEECCCCCEE
Q 018808 257 --LALPFKDKSREKLARYFELSTLPTLVIIGPDGKTL 291 (350)
Q Consensus 257 --~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~ 291 (350)
-......+...++++.+|+.++|+++ + .+|+++
T Consensus 150 ~~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~ 184 (197)
T cd03020 150 PAASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV 184 (197)
T ss_pred CccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence 01122344566899999999999997 5 557764
No 314
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.41 E-value=0.00064 Score=53.05 Aligned_cols=68 Identities=12% Similarity=0.233 Sum_probs=56.0
Q ss_pred EEEEEecC--CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCC
Q 018808 40 IGLYFSAS--WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 117 (350)
Q Consensus 40 ~~v~F~~~--~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 117 (350)
.+|.|-.. .+|-+....-.|.++.++|... ++.++.|++|... .++..|||.+
T Consensus 37 ~vl~~~gdp~r~~E~~D~avvleELa~e~~~~-~v~~akVDiD~~~------------------------~LA~~fgV~s 91 (132)
T PRK11509 37 GVVLLSSDPKRTPEVSDNPVMIGELLREFPDY-TWQVAIADLEQSE------------------------AIGDRFGVFR 91 (132)
T ss_pred EEEEeCCCCCcCCccccHHHHHHHHHHHhcCC-ceEEEEEECCCCH------------------------HHHHHcCCcc
Confidence 55655543 4778888888899999999643 4899999988775 7999999999
Q ss_pred cceEEEECCCCeEEec
Q 018808 118 IPHLVILDENGKVLSD 133 (350)
Q Consensus 118 ~P~~~lid~~G~v~~~ 133 (350)
+|+++++ ++|+.+.+
T Consensus 92 iPTLl~F-kdGk~v~~ 106 (132)
T PRK11509 92 FPATLVF-TGGNYRGV 106 (132)
T ss_pred CCEEEEE-ECCEEEEE
Confidence 9999999 89998874
No 315
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.39 E-value=0.001 Score=50.99 Aligned_cols=77 Identities=21% Similarity=0.559 Sum_probs=48.1
Q ss_pred CCc-EEEEEecC-------CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHH
Q 018808 37 KGK-IGLYFSAS-------WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (350)
Q Consensus 37 ~gk-~~v~F~~~-------~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (350)
.|+ ++|.|+++ |||.|+.-.|.+.+.....++ +..++.+.+.+. ..|+. .+..
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r-~~Wkd----------------p~n~ 78 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDR-PEWKD----------------PNNP 78 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---H-HHHC-----------------TTSH
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCH-HHhCC----------------CCCC
Confidence 456 88888854 999999999999988888554 477887776533 33322 1124
Q ss_pred HHh--hcCCCCcceEEEECCCCeEEe
Q 018808 109 LDE--LFKVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 109 l~~--~~~v~~~P~~~lid~~G~v~~ 132 (350)
+.. .+++.++||++-++..++++.
T Consensus 79 fR~~p~~~l~~IPTLi~~~~~~rL~e 104 (119)
T PF06110_consen 79 FRTDPDLKLKGIPTLIRWETGERLVE 104 (119)
T ss_dssp HHH--CC---SSSEEEECTSS-EEEH
T ss_pred ceEcceeeeeecceEEEECCCCccch
Confidence 444 699999999999976666543
No 316
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.37 E-value=0.00085 Score=47.36 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=40.5
Q ss_pred eccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEE
Q 018808 205 SMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVII 284 (350)
Q Consensus 205 ~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~li 284 (350)
++++|+.|......++++..+++-+ ++++-+ . + ..++ .+||+.++|++ +|
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~i~---~ei~~~--~-~----------------------~~~~-~~ygv~~vPal-vI 55 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELGIE---VEIIDI--E-D----------------------FEEI-EKYGVMSVPAL-VI 55 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTTEE---EEEEET--T-T----------------------HHHH-HHTT-SSSSEE-EE
T ss_pred eCCCCCCcHHHHHHHHHHHHhcCCe---EEEEEc--c-C----------------------HHHH-HHcCCCCCCEE-EE
Confidence 5777999999999888888887422 544433 1 1 1345 89999999999 55
Q ss_pred CCCCCEEecc
Q 018808 285 GPDGKTLHSN 294 (350)
Q Consensus 285 d~~G~i~~~~ 294 (350)
||+++...
T Consensus 56 --ng~~~~~G 63 (76)
T PF13192_consen 56 --NGKVVFVG 63 (76)
T ss_dssp --TTEEEEES
T ss_pred --CCEEEEEe
Confidence 47877654
No 317
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.37 E-value=0.015 Score=56.98 Aligned_cols=64 Identities=8% Similarity=0.048 Sum_probs=46.2
Q ss_pred cccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHH
Q 018808 193 SDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARY 272 (350)
Q Consensus 193 ~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (350)
..+.++.-+..|..+.||+|+.....++++....+. +..-.|... ...+++++
T Consensus 113 ~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~----i~~~~id~~-----------------------~~~~~~~~ 165 (515)
T TIGR03140 113 RRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPN----ISHTMIDGA-----------------------LFQDEVEA 165 (515)
T ss_pred HhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC----ceEEEEEch-----------------------hCHHHHHh
Confidence 345566778889999999999888877777666442 444433222 11568899
Q ss_pred cCCCCccEEEE
Q 018808 273 FELSTLPTLVI 283 (350)
Q Consensus 273 ~~v~~~P~~~l 283 (350)
|++.++|++++
T Consensus 166 ~~v~~VP~~~i 176 (515)
T TIGR03140 166 LGIQGVPAVFL 176 (515)
T ss_pred cCCcccCEEEE
Confidence 99999999986
No 318
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.36 E-value=0.00054 Score=55.40 Aligned_cols=85 Identities=25% Similarity=0.368 Sum_probs=44.1
Q ss_pred eecCCCCCc-EEEEEecCCChhhhhhhHH-H--HHHHHHhccCCCEEEEEEECCCCH-HHHHhHHhcCCCcccccCChhh
Q 018808 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPI-L--AEVYNELSRQGDFEVIFVSGDEDD-EAFKGYFSKMPWLAVPFSDSET 105 (350)
Q Consensus 31 ~~l~~~~gk-~~v~F~~~~C~~C~~~~~~-l--~~l~~~~~~~~~~~~v~i~~d~~~-~~~~~~~~~~~~~~~~~~~~~~ 105 (350)
+..+.-++| ++|.+.++||..|..|... | .++.+.++++ ||.|.+|.++ .+++.....
T Consensus 30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~----FI~VkvDree~Pdid~~y~~------------- 92 (163)
T PF03190_consen 30 LEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN----FIPVKVDREERPDIDKIYMN------------- 92 (163)
T ss_dssp HHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-----EEEEEETTT-HHHHHHHHH-------------
T ss_pred HHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC----EEEEEeccccCccHHHHHHH-------------
Confidence 344445678 9999999999999877642 2 2334444332 5565555432 222111110
Q ss_pred HHHHHhhcCCCCcceEEEECCCCeEEecC
Q 018808 106 RDKLDELFKVMGIPHLVILDENGKVLSDG 134 (350)
Q Consensus 106 ~~~l~~~~~v~~~P~~~lid~~G~v~~~~ 134 (350)
-.....|..+.|+.++++++|+.++-+
T Consensus 93 --~~~~~~~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 93 --AVQAMSGSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp --HHHHHHS---SSEEEEE-TTS-EEEEE
T ss_pred --HHHHhcCCCCCCceEEECCCCCeeeee
Confidence 111223778999999999999998853
No 319
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.34 E-value=0.0025 Score=44.98 Aligned_cols=59 Identities=36% Similarity=0.530 Sum_probs=41.4
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEE
Q 018808 43 YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLV 122 (350)
Q Consensus 43 ~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~ 122 (350)
.+++++|++|......+.++...++ +.+=.+.. .+. +++ ..||+.++|+++
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~-~~~-----------------------~~~-~~ygv~~vPalv 54 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDI-EDF-----------------------EEI-EKYGVMSVPALV 54 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEET-TTH-----------------------HHH-HHTT-SSSSEEE
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEc-cCH-----------------------HHH-HHcCCCCCCEEE
Confidence 3468889999998888888888773 33433333 232 255 889999999996
Q ss_pred EECCCCeEEec
Q 018808 123 ILDENGKVLSD 133 (350)
Q Consensus 123 lid~~G~v~~~ 133 (350)
+ ||+++..
T Consensus 55 I---ng~~~~~ 62 (76)
T PF13192_consen 55 I---NGKVVFV 62 (76)
T ss_dssp E---TTEEEEE
T ss_pred E---CCEEEEE
Confidence 6 6888764
No 320
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.26 E-value=0.0022 Score=42.85 Aligned_cols=59 Identities=31% Similarity=0.511 Sum_probs=41.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|..++||+|......|.+ . .+.+-.++++.+.+ ..+.+.+..+..++|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~-------~-~i~y~~~dv~~~~~--------------------~~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE-------K-GIPYEEVDVDEDEE--------------------AREELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH-------T-TBEEEEEEGGGSHH--------------------HHHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHHHH-------c-CCeeeEcccccchh--------------------HHHHHHHHcCCCccCE
Confidence 467899999999997766632 2 37777777776642 2235666669999999
Q ss_pred EEEECCCCeE
Q 018808 121 LVILDENGKV 130 (350)
Q Consensus 121 ~~lid~~G~v 130 (350)
+++ +|++
T Consensus 53 v~i---~g~~ 59 (60)
T PF00462_consen 53 VFI---DGKF 59 (60)
T ss_dssp EEE---TTEE
T ss_pred EEE---CCEE
Confidence 987 5554
No 321
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.25 E-value=0.0014 Score=43.74 Aligned_cols=55 Identities=22% Similarity=0.346 Sum_probs=37.7
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|+.+|||+|......| .+.+ +.+-.++++.+++ ...++.+..|...+|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~--i~y~~~dv~~~~~-------------------~~~~l~~~~g~~~~P~ 52 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKG--IPYEEVDVDEDEE-------------------AREELKELSGVRTVPQ 52 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTT--BEEEEEEGGGSHH-------------------HHHHHHHHHSSSSSSE
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcC--CeeeEcccccchh-------------------HHHHHHHHcCCCccCE
Confidence 4678999999998877666 3333 5566666664432 1245556669999999
Q ss_pred EEE
Q 018808 281 LVI 283 (350)
Q Consensus 281 ~~l 283 (350)
+++
T Consensus 53 v~i 55 (60)
T PF00462_consen 53 VFI 55 (60)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 322
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.23 E-value=0.0037 Score=52.93 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=56.7
Q ss_pred eeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC--CH--------------HHHHhHHhc
Q 018808 30 QVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE--DD--------------EAFKGYFSK 92 (350)
Q Consensus 30 ~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~--~~--------------~~~~~~~~~ 92 (350)
.+.+..-.++ +++.|..+.||+|+++.+.+.+ ...+.++.++.+.... .. +.+.++...
T Consensus 69 ~i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~ 144 (197)
T cd03020 69 AIVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP----NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSG 144 (197)
T ss_pred CeEEcCCCCCEEEEEEECCCCccHHHHHHHHhh----ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhC
Confidence 3444444567 9999999999999999988876 1222134444444432 11 112222221
Q ss_pred CCC---cccccCChhhHHHHHhhcCCCCcceEEEECCCCeEE
Q 018808 93 MPW---LAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 93 ~~~---~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 131 (350)
... ....-...+.+..+++.+|+.++|++++ .+|+++
T Consensus 145 ~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii~--~~G~~~ 184 (197)
T cd03020 145 GKVPPPAASCDNPVAANLALGRQLGVNGTPTIVL--ADGRVV 184 (197)
T ss_pred CCCCCCccccCchHHHHHHHHHHcCCCcccEEEE--CCCeEe
Confidence 111 0111234556778999999999999984 567764
No 323
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.0011 Score=49.78 Aligned_cols=71 Identities=17% Similarity=0.172 Sum_probs=49.2
Q ss_pred CCEEEEEEec--------cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHH
Q 018808 197 GKTIGLYFSM--------SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREK 268 (350)
Q Consensus 197 gk~vlv~f~~--------~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (350)
|+.+++.|.+ +|||.|.+..|.+.+..+..... +.+|.|.+.+. +. =.+....
T Consensus 25 ~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~---~~~v~v~VG~r-p~---------------Wk~p~n~ 85 (128)
T KOG3425|consen 25 GKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPED---VHFVHVYVGNR-PY---------------WKDPANP 85 (128)
T ss_pred CceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCc---eEEEEEEecCC-Cc---------------ccCCCCc
Confidence 4456666664 59999999999998888755544 88888877631 11 1122244
Q ss_pred HHHHcCC-CCccEEEEECC
Q 018808 269 LARYFEL-STLPTLVIIGP 286 (350)
Q Consensus 269 ~~~~~~v-~~~P~~~lid~ 286 (350)
+.+..++ .++||++=.++
T Consensus 86 FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 86 FRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred cccCCCceeecceeeEEcC
Confidence 5666676 89999998874
No 324
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.12 E-value=0.0049 Score=53.60 Aligned_cols=95 Identities=19% Similarity=0.297 Sum_probs=56.3
Q ss_pred eecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCC-CH----------------HHHHhHHh
Q 018808 31 VKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDE-DD----------------EAFKGYFS 91 (350)
Q Consensus 31 ~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~-~~----------------~~~~~~~~ 91 (350)
+....-.|+ +++.|.-+.||+|+++.+.+.++.+ .+ ++.++.+.... .+ ..+.++..
T Consensus 100 i~~g~~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~ 175 (232)
T PRK10877 100 IVYKAPQEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMK 175 (232)
T ss_pred EEecCCCCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHc
Confidence 333334567 8999999999999999888876643 22 23333333311 11 11222222
Q ss_pred cCCCcc-cccCChhhHHHHHhhcCCCCcceEEEECCCCeEE
Q 018808 92 KMPWLA-VPFSDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 92 ~~~~~~-~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 131 (350)
...... ..-...+.+..+++.+|++++|++++ ++|+++
T Consensus 176 ~~~~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 176 GKDVSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred CCCCCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 111110 11234566779999999999999996 578765
No 325
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.12 E-value=0.0064 Score=53.52 Aligned_cols=92 Identities=17% Similarity=0.250 Sum_probs=54.6
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEEC---CCC-------------HH-HHHhHHhcCCCc-
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG---DED-------------DE-AFKGYFSKMPWL- 96 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~---d~~-------------~~-~~~~~~~~~~~~- 96 (350)
-.++ +++.|.-+.||+|+++.+.+.++.+. +++++..+.. ..+ +. .+..+...+...
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~----g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~ 190 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS----GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLG 190 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHHhhc----CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccC
Confidence 3566 88899999999999998888765542 2355444432 111 11 111111111100
Q ss_pred -cccc-------CChhhHHHHHhhcCCCCcceEEEECCCCeEE
Q 018808 97 -AVPF-------SDSETRDKLDELFKVMGIPHLVILDENGKVL 131 (350)
Q Consensus 97 -~~~~-------~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~ 131 (350)
.... ...+.+..+.+.+|++++|++++.|.+|.+.
T Consensus 191 ~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~ 233 (251)
T PRK11657 191 LKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQ 233 (251)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEE
Confidence 0000 1122355788899999999999999889754
No 326
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.06 E-value=0.0037 Score=45.08 Aligned_cols=66 Identities=18% Similarity=0.380 Sum_probs=45.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhc--CCCCc
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELF--KVMGI 118 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~v~~~ 118 (350)
+..|..+|||+|.+....|.++..++. .+.+..++++.+... ..++.+.+ ++..+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~--------------------~~el~~~~~~~~~~v 59 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGIS--------------------KADLEKTVGKPVETV 59 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHH--------------------HHHHHHHHCCCCCcC
Confidence 567899999999999999998887652 366777777655321 11333333 35789
Q ss_pred ceEEEECCCCeEEe
Q 018808 119 PHLVILDENGKVLS 132 (350)
Q Consensus 119 P~~~lid~~G~v~~ 132 (350)
|++++ +|+.+.
T Consensus 60 P~ifi---~g~~ig 70 (85)
T PRK11200 60 PQIFV---DQKHIG 70 (85)
T ss_pred CEEEE---CCEEEc
Confidence 99875 576653
No 327
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.00076 Score=56.14 Aligned_cols=91 Identities=19% Similarity=0.319 Sum_probs=65.7
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC-
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL- 275 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v- 275 (350)
.+.++|.|++.|.|.|....|.+.++..+|...+ +.+=.|.+..= ...+.+|+|
T Consensus 144 ~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~--lkFGkvDiGrf-----------------------pd~a~kfris 198 (265)
T KOG0914|consen 144 RTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL--LKFGKVDIGRF-----------------------PDVAAKFRIS 198 (265)
T ss_pred ceEEEEEEEeecChhhcccccccHHHHHHhCCCC--CcccceeeccC-----------------------cChHHheeec
Confidence 3589999999999999999999999999999877 66666655421 125667776
Q ss_pred -----CCccEEEEECCCCCEEeccchhhhhhcC-CccCCCCccchH
Q 018808 276 -----STLPTLVIIGPDGKTLHSNVAEAIEEHG-VGAFPFTPEKFA 315 (350)
Q Consensus 276 -----~~~P~~~lid~~G~i~~~~~~~~~~~~~-~~~~p~~~~~~~ 315 (350)
+.+||.+++ ++|+-+.+.-. .+..| ...||++.+-.-
T Consensus 199 ~s~~srQLPT~ilF-q~gkE~~RrP~--vd~~gra~s~~fSeenv~ 241 (265)
T KOG0914|consen 199 LSPGSRQLPTYILF-QKGKEVSRRPD--VDVKGRAVSFPFSEENVC 241 (265)
T ss_pred cCcccccCCeEEEE-ccchhhhcCcc--ccccCCcccccccHHHHH
Confidence 459999999 88887766422 22222 246788877543
No 328
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.01 E-value=0.0081 Score=50.37 Aligned_cols=109 Identities=17% Similarity=0.313 Sum_probs=80.5
Q ss_pred eecCCCceeeccc-cCCCEEEE--EEe-----ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcC
Q 018808 182 VISSDGRKISVSD-LEGKTIGL--YFS-----MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGS 253 (350)
Q Consensus 182 ~~~~~g~~v~l~~-~~gk~vlv--~f~-----~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~ 253 (350)
+.+.+|+ ++|.+ |.|+-.|| .|. ..-|+-|...+..++.....+..++ +.++.|+-. ..+++..|.+.
T Consensus 51 F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd--~tfa~vSra-P~~~i~afk~r 126 (211)
T PF05988_consen 51 FDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARD--TTFAVVSRA-PLEKIEAFKRR 126 (211)
T ss_pred EeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCC--ceEEEEeCC-CHHHHHHHHHh
Confidence 4566776 88877 57763333 332 4579999999999988888888887 888888866 78889999999
Q ss_pred CCCccccCCchhHHHHHHHcCC-----CCccEEEEECCC-CCEEeccc
Q 018808 254 MPWLALPFKDKSREKLARYFEL-----STLPTLVIIGPD-GKTLHSNV 295 (350)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~v-----~~~P~~~lid~~-G~i~~~~~ 295 (350)
++|- +|..+.....+...|++ ...|.+-++=++ |+|.+.+.
T Consensus 127 mGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~VfhTys 173 (211)
T PF05988_consen 127 MGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRVFHTYS 173 (211)
T ss_pred cCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEEEEEee
Confidence 9987 88888777778888887 456765444455 45554443
No 329
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.96 E-value=0.0066 Score=46.60 Aligned_cols=71 Identities=13% Similarity=0.202 Sum_probs=48.1
Q ss_pred CCCCc-EEEEEecC----CChhhhhh--hHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHH
Q 018808 35 SLKGK-IGLYFSAS----WCGPCQRF--TPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 107 (350)
Q Consensus 35 ~~~gk-~~v~F~~~----~C~~C~~~--~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (350)
.-++| ++|+++++ ||..|+.. .|.+.+..+ + ++.+.+.+++..+. .
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln---~--~fv~w~~dv~~~eg----------------------~ 66 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN---T--RMLFWACSVAKPEG----------------------Y 66 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH---c--CEEEEEEecCChHH----------------------H
Confidence 44678 99999999 88888754 344444433 2 35555555554321 3
Q ss_pred HHHhhcCCCCcceEEEE---CCCCeEEe
Q 018808 108 KLDELFKVMGIPHLVIL---DENGKVLS 132 (350)
Q Consensus 108 ~l~~~~~v~~~P~~~li---d~~G~v~~ 132 (350)
.++..++++++|++.++ +.+.+++.
T Consensus 67 ~la~~l~~~~~P~~~~l~~~~~~~~vv~ 94 (116)
T cd02991 67 RVSQALRERTYPFLAMIMLKDNRMTIVG 94 (116)
T ss_pred HHHHHhCCCCCCEEEEEEecCCceEEEE
Confidence 79999999999999999 44445554
No 330
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=96.88 E-value=0.0066 Score=51.55 Aligned_cols=105 Identities=14% Similarity=0.137 Sum_probs=74.5
Q ss_pred eeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCC-CcEEEEEEeCCCCHHHHH-HhhcCCCCccccCCc--hh
Q 018808 190 ISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKG-ESFEIVLISLDDEEESFK-RDLGSMPWLALPFKD--KS 265 (350)
Q Consensus 190 v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~-~~~~vv~v~~d~~~~~~~-~~~~~~~~~~~~~~~--~~ 265 (350)
....+..|+++||.+-..+|..|...+..|..+..++..+| .++.++.|+--.....+. ..++..--..||+.. ..
T Consensus 19 ~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r~~~~ipVyqq~~~ 98 (238)
T PF04592_consen 19 DPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRRVSEHIPVYQQDEN 98 (238)
T ss_pred hHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHhCCCCCceecCCcc
Confidence 34567789999999999999999999999999999999887 578888888754333332 223322223466543 23
Q ss_pred HHHHHHHcCCCCccEEEEECCCCCEEeccc
Q 018808 266 REKLARYFELSTLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 266 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~~ 295 (350)
...+...++-. -=.++|+|+=|++.+...
T Consensus 99 q~dvW~~L~G~-kdD~~iyDRCGrL~~~i~ 127 (238)
T PF04592_consen 99 QPDVWELLNGS-KDDFLIYDRCGRLTYHIP 127 (238)
T ss_pred ccCHHHHhCCC-cCcEEEEeccCcEEEEec
Confidence 34566666543 236789999999998754
No 331
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.84 E-value=0.0033 Score=45.36 Aligned_cols=65 Identities=15% Similarity=0.260 Sum_probs=43.5
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC--CCCc
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE--LSTL 278 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~ 278 (350)
+..|+.+|||+|.+....|+++..++. + +.+..++++.+..+ ..++.+.++ +..+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~--~--i~~~~idi~~~~~~-------------------~~el~~~~~~~~~~v 59 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD--D--FDYRYVDIHAEGIS-------------------KADLEKTVGKPVETV 59 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc--C--CcEEEEECCCChHH-------------------HHHHHHHHCCCCCcC
Confidence 567999999999999999999887653 3 66666666643211 123444444 5789
Q ss_pred cEEEEECCCCCEE
Q 018808 279 PTLVIIGPDGKTL 291 (350)
Q Consensus 279 P~~~lid~~G~i~ 291 (350)
|+++ + +|+.+
T Consensus 60 P~if-i--~g~~i 69 (85)
T PRK11200 60 PQIF-V--DQKHI 69 (85)
T ss_pred CEEE-E--CCEEE
Confidence 9976 4 46554
No 332
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.84 E-value=0.006 Score=44.54 Aligned_cols=83 Identities=16% Similarity=0.183 Sum_probs=48.7
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEEC--CCC----HHH-HHhHHhcC-CCcccccCChhhHHHHHhh
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG--DED----DEA-FKGYFSKM-PWLAVPFSDSETRDKLDEL 112 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~--d~~----~~~-~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 112 (350)
+..|+...||+|....+.+.++....+. ++.+....+ ... ... .+...... ......+.+.-....+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARA 78 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 4678999999999999999988754443 356665543 322 111 11111110 0000111111144578889
Q ss_pred cCCCCcceEEEEC
Q 018808 113 FKVMGIPHLVILD 125 (350)
Q Consensus 113 ~~v~~~P~~~lid 125 (350)
+|+.++|++++-|
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 9999999999965
No 333
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.72 E-value=0.0094 Score=49.32 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=29.6
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQ 69 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~ 69 (350)
.++ +++.|+...||+|..+.+.+.++.++++.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~ 47 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD 47 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC
Confidence 677 999999999999999999999999988553
No 334
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.65 E-value=0.008 Score=42.75 Aligned_cols=64 Identities=30% Similarity=0.470 Sum_probs=43.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|..+|||+|....+.|.++.. .+.++.+..+.+..+ ....+.+.++..++|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~-------------------~~~~~~~~~g~~~~P~ 56 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSE-------------------IQDYLQELTGQRTVPN 56 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHH-------------------HHHHHHHHhCCCCCCe
Confidence 567889999999998888776533 356677766554321 1225666678899999
Q ss_pred EEEECCCCeEEe
Q 018808 121 LVILDENGKVLS 132 (350)
Q Consensus 121 ~~lid~~G~v~~ 132 (350)
+++ +|+.+.
T Consensus 57 v~~---~g~~ig 65 (82)
T cd03419 57 VFI---GGKFIG 65 (82)
T ss_pred EEE---CCEEEc
Confidence 754 465543
No 335
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=96.65 E-value=0.065 Score=42.83 Aligned_cols=131 Identities=11% Similarity=0.228 Sum_probs=78.8
Q ss_pred hcCccCCceecc-----------CCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHH-hccCCCEEEEEE-ECC
Q 018808 15 LSSSARDFLIRS-----------NGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNE-LSRQGDFEVIFV-SGD 80 (350)
Q Consensus 15 ~g~~~p~f~~~~-----------~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~-~~~~~~~~~v~i-~~d 80 (350)
+|++.|...+.. ...+++.+.+.|| .+|...|-.-..-....|.+..+.+. |+.+ +++...| +.|
T Consensus 3 ~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d-~yqtttIiN~d 81 (160)
T PF09695_consen 3 LGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD-KYQTTTIINLD 81 (160)
T ss_pred CCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc-ceeEEEEEecc
Confidence 578888776643 2336777789999 66666655444444445555555444 5444 4666665 555
Q ss_pred CC--------HHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCC-cceEEEECCCCeEEecCCccceecccCcCCCCCh
Q 018808 81 ED--------DEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG-IPHLVILDENGKVLSDGGVEIIREYGVEGYPFTV 151 (350)
Q Consensus 81 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~-~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~ 151 (350)
+. ...+++-.+.+||-.+-.. .+..+.+.|+... .-.++++|++|+|.+.. .| ..+.
T Consensus 82 DAi~gt~~fVrss~e~~kk~~p~s~~vlD---~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k-------~G----~Ls~ 147 (160)
T PF09695_consen 82 DAIWGTGGFVRSSAEDSKKEFPWSQFVLD---SNGVVRKAWQLQEESSAIIVLDKQGKVQFVK-------EG----ALSP 147 (160)
T ss_pred cccccchHHHHHHHHHhhhhCCCcEEEEc---CCCceeccccCCCCCceEEEEcCCccEEEEE-------CC----CCCH
Confidence 43 3334445556787665443 3335677777653 34688999999998741 22 3566
Q ss_pred HHHHHHHHH
Q 018808 152 ERIKEMKEQ 160 (350)
Q Consensus 152 ~~i~~l~~~ 160 (350)
+.+...+..
T Consensus 148 ~Ev~qVi~L 156 (160)
T PF09695_consen 148 AEVQQVIAL 156 (160)
T ss_pred HHHHHHHHH
Confidence 666666543
No 336
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.65 E-value=0.0053 Score=43.70 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=39.0
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|..+|||+|......|.++.. . +.++-|+.+.+..+. ...+.+.+|...+|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~---~~~~~v~~~~~~~~~------------------~~~~~~~~g~~~~P~ 56 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----K---PAVVELDQHEDGSEI------------------QDYLQELTGQRTVPN 56 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----C---cEEEEEeCCCChHHH------------------HHHHHHHhCCCCCCe
Confidence 467889999999988887766532 2 667777666432221 134566778899999
Q ss_pred EE
Q 018808 281 LV 282 (350)
Q Consensus 281 ~~ 282 (350)
++
T Consensus 57 v~ 58 (82)
T cd03419 57 VF 58 (82)
T ss_pred EE
Confidence 74
No 337
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=96.59 E-value=0.01 Score=50.40 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=76.3
Q ss_pred ccCCceeccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCC--CEEEEEEECCCCHHHHH-hHHhcC
Q 018808 18 SARDFLIRSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQG--DFEVIFVSGDEDDEAFK-GYFSKM 93 (350)
Q Consensus 18 ~~p~f~~~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~~v~i~~d~~~~~~~-~~~~~~ 93 (350)
++|.+.+. ..-.+.+..|+ +||.+.-.+|..|......|..|..+|...+ ++.++.|+--+....++ ..++..
T Consensus 9 ~~p~W~i~---~~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r 85 (238)
T PF04592_consen 9 PPPPWKIG---GQDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRR 85 (238)
T ss_pred CCCCceEC---CchHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHh
Confidence 44555442 24456788999 9999999999999999999999999998877 78888888543322222 222222
Q ss_pred CCcccccCCh-hhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 94 PWLAVPFSDS-ETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 94 ~~~~~~~~~~-~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
--..++++.. .....+...++-. ---++|+|+=|++.+.
T Consensus 86 ~~~~ipVyqq~~~q~dvW~~L~G~-kdD~~iyDRCGrL~~~ 125 (238)
T PF04592_consen 86 VSEHIPVYQQDENQPDVWELLNGS-KDDFLIYDRCGRLTYH 125 (238)
T ss_pred CCCCCceecCCccccCHHHHhCCC-cCcEEEEeccCcEEEE
Confidence 2233555432 2334666666643 3468999999999884
No 338
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.59 E-value=0.006 Score=44.55 Aligned_cols=81 Identities=20% Similarity=0.178 Sum_probs=49.0
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC--CC-----HHHHHHhhc--CCC-CccccCCchhHHHHH
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD--DE-----EESFKRDLG--SMP-WLALPFKDKSREKLA 270 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d--~~-----~~~~~~~~~--~~~-~~~~~~~~~~~~~~~ 270 (350)
+..|+...||+|....+.+.++......+ +.+..+.+. .. ....+.... ... -..+.... ......
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~ 76 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGG---VRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEAL-ADTALA 76 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCc---EEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHH-HHHHHH
Confidence 35789999999999999999987444333 666666553 21 111111111 000 00000000 456788
Q ss_pred HHcCCCCccEEEEEC
Q 018808 271 RYFELSTLPTLVIIG 285 (350)
Q Consensus 271 ~~~~v~~~P~~~lid 285 (350)
+.+|+.++|++++-|
T Consensus 77 ~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 77 RALGVTGTPTFVVNG 91 (98)
T ss_pred HHcCCCCCCEEEECC
Confidence 899999999999886
No 339
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.47 E-value=0.0053 Score=54.27 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=56.6
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
+..|||.||-+.++.|..+-..|..++.+|.. ++|+.|..... . +...|...
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~-----------------------~-~~~~f~~~ 197 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKC-----------------------P-ASENFPDK 197 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGC-----------------------C-TTTTS-TT
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhcc-----------------------C-cccCCccc
Confidence 45899999999999999999999999999986 88998876521 0 35678899
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
.+|++++. ++|.++...++
T Consensus 198 ~LPtllvY-k~G~l~~~~V~ 216 (265)
T PF02114_consen 198 NLPTLLVY-KNGDLIGNFVG 216 (265)
T ss_dssp C-SEEEEE-ETTEEEEEECT
T ss_pred CCCEEEEE-ECCEEEEeEEe
Confidence 99999999 89999988876
No 340
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.44 E-value=0.014 Score=40.11 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=34.9
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|+.+||++|......|.+ .+ +.+..++++.+.+. ..++.+..++..+|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~--i~~~~~~i~~~~~~-------------------~~~~~~~~~~~~vP~ 53 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RG--IPFEEVDVDEDPEA-------------------LEELKKLNGYRSVPV 53 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CC--CCeEEEeCCCCHHH-------------------HHHHHHHcCCcccCE
Confidence 467899999999987666644 23 55555666643221 123344447889998
Q ss_pred EEE
Q 018808 281 LVI 283 (350)
Q Consensus 281 ~~l 283 (350)
+++
T Consensus 54 i~~ 56 (73)
T cd02976 54 VVI 56 (73)
T ss_pred EEE
Confidence 865
No 341
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.41 E-value=0.029 Score=38.26 Aligned_cols=61 Identities=31% Similarity=0.457 Sum_probs=40.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|..+|||+|+.....|.+. .+.+..++++.+.+ ....+.+..+...+|.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~--------~i~~~~~di~~~~~--------------------~~~~l~~~~~~~~~P~ 53 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL--------GIEFEEIDILEDGE--------------------LREELKELSGWPTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCcEEEEECCCCHH--------------------HHHHHHHHhCCCCcCE
Confidence 5678899999999988877654 24556666665543 1225555667788887
Q ss_pred EEEECCCCeEEe
Q 018808 121 LVILDENGKVLS 132 (350)
Q Consensus 121 ~~lid~~G~v~~ 132 (350)
+++ +|+.+.
T Consensus 54 ~~~---~~~~ig 62 (72)
T cd02066 54 IFI---NGEFIG 62 (72)
T ss_pred EEE---CCEEEe
Confidence 755 566554
No 342
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=96.36 E-value=0.021 Score=47.87 Aligned_cols=108 Identities=22% Similarity=0.391 Sum_probs=72.3
Q ss_pred CceeccCCceeecCCC-CCc--EEEEEec------CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHh
Q 018808 21 DFLIRSNGDQVKLDSL-KGK--IGLYFSA------SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (350)
Q Consensus 21 ~f~~~~~g~~~~l~~~-~gk--~~v~F~~------~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~ 91 (350)
++.++....+++|.++ .|+ ++|+.+. ..|+-|..+...+......+..+ ++.++.|+- ...+.+..|.+
T Consensus 48 ~Y~F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~r-d~tfa~vSr-aP~~~i~afk~ 125 (211)
T PF05988_consen 48 DYVFDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHAR-DTTFAVVSR-APLEKIEAFKR 125 (211)
T ss_pred CeEEeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhC-CceEEEEeC-CCHHHHHHHHH
Confidence 4666544445999985 667 6666433 45999999999997777788777 488888874 47788999999
Q ss_pred cCCCcccccCChhhHHHHHhhcCC-----CCcceE-EEECCCCeEEe
Q 018808 92 KMPWLAVPFSDSETRDKLDELFKV-----MGIPHL-VILDENGKVLS 132 (350)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v-----~~~P~~-~lid~~G~v~~ 132 (350)
.++|...-++..+. .+...|++ ...|.+ +++-..|+|..
T Consensus 126 rmGW~~pw~Ss~gs--~Fn~D~~~~~~~~~~~~g~svF~Rdg~~Vfh 170 (211)
T PF05988_consen 126 RMGWTFPWYSSYGS--DFNYDFGVSFDEGGEMPGLSVFLRDGGRVFH 170 (211)
T ss_pred hcCCCceEEEcCCC--cccccccceeccCCCceeEEEEEEcCCEEEE
Confidence 99998433443332 55666776 344533 33323355554
No 343
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.30 E-value=0.02 Score=39.36 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=36.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|+++||++|.+....|.+ . .+.+..++++.+.+. ...+.+..+...+|+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~-~i~~~~~~i~~~~~~--------------------~~~~~~~~~~~~vP~ 53 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------R-GIPFEEVDVDEDPEA--------------------LEELKKLNGYRSVPV 53 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------C-CCCeEEEeCCCCHHH--------------------HHHHHHHcCCcccCE
Confidence 567899999999997766654 1 255666666654321 123444457788998
Q ss_pred EEE
Q 018808 121 LVI 123 (350)
Q Consensus 121 ~~l 123 (350)
+++
T Consensus 54 i~~ 56 (73)
T cd02976 54 VVI 56 (73)
T ss_pred EEE
Confidence 876
No 344
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.29 E-value=0.025 Score=42.18 Aligned_cols=78 Identities=13% Similarity=0.228 Sum_probs=53.4
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
..++++|+=..+.||........+++.++...++ +.+..+.+-... +...++++.|||
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R-------------------~vSn~IAe~~~V 75 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYR-------------------PVSNAIAEDFGV 75 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGH-------------------HHHHHHHHHHT-
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCc-------------------hhHHHHHHHhCC
Confidence 3578888888999999999999999988887654 666666553221 234789999999
Q ss_pred CC-ccEEEEECCCCCEEeccch
Q 018808 276 ST-LPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~-~P~~~lid~~G~i~~~~~~ 296 (350)
.. -|..+|| ++|++++...-
T Consensus 76 ~HeSPQ~ili-~~g~~v~~aSH 96 (105)
T PF11009_consen 76 KHESPQVILI-KNGKVVWHASH 96 (105)
T ss_dssp ---SSEEEEE-ETTEEEEEEEG
T ss_pred CcCCCcEEEE-ECCEEEEECcc
Confidence 76 9999999 99999976543
No 345
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.23 E-value=0.025 Score=38.60 Aligned_cols=61 Identities=23% Similarity=0.266 Sum_probs=38.9
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|..+|||+|+.....|.+.. +.+..++++.+.+. ..++.+..+...+|+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~-------------------~~~l~~~~~~~~~P~ 53 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGEL-------------------REELKELSGWPTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 45688999999998888776542 34445555543321 144566677788998
Q ss_pred EEEECCCCCEEe
Q 018808 281 LVIIGPDGKTLH 292 (350)
Q Consensus 281 ~~lid~~G~i~~ 292 (350)
+++ +|+.+.
T Consensus 54 ~~~---~~~~ig 62 (72)
T cd02066 54 IFI---NGEFIG 62 (72)
T ss_pred EEE---CCEEEe
Confidence 754 455543
No 346
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.22 E-value=0.021 Score=43.09 Aligned_cols=71 Identities=21% Similarity=0.447 Sum_probs=50.2
Q ss_pred CCc-EEEEEec--------CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHH
Q 018808 37 KGK-IGLYFSA--------SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRD 107 (350)
Q Consensus 37 ~gk-~~v~F~~--------~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (350)
+|+ +++.|.+ +|||.|..-.|.+.+..+..++ ++.+|-+.+...+ . |.. .+.
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp-~---------Wk~-------p~n 84 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRP-Y---------WKD-------PAN 84 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCC-c---------ccC-------CCC
Confidence 667 8888886 5899999999999988886665 4788888765332 1 111 112
Q ss_pred HHHhhcCC-CCcceEEEECC
Q 018808 108 KLDELFKV-MGIPHLVILDE 126 (350)
Q Consensus 108 ~l~~~~~v-~~~P~~~lid~ 126 (350)
.+.+..++ +.+||++=.+.
T Consensus 85 ~FR~d~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 85 PFRKDPGILTAVPTLLRWKR 104 (128)
T ss_pred ccccCCCceeecceeeEEcC
Confidence 45555666 88999998864
No 347
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.20 E-value=0.016 Score=41.06 Aligned_cols=61 Identities=23% Similarity=0.353 Sum_probs=39.2
Q ss_pred EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCc
Q 018808 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTL 278 (350)
Q Consensus 199 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 278 (350)
.-++.|..+|||+|.+....|.+ .| +.+..++++.+.+. .++.+..|...+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~-------~g--i~y~~idi~~~~~~--------------------~~~~~~~g~~~v 58 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKE-------KG--YDFEEIPLGNDARG--------------------RSLRAVTGATTV 58 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHH-------cC--CCcEEEECCCChHH--------------------HHHHHHHCCCCc
Confidence 34567999999999988777643 23 44445555543221 235556788999
Q ss_pred cEEEEECCCCCEE
Q 018808 279 PTLVIIGPDGKTL 291 (350)
Q Consensus 279 P~~~lid~~G~i~ 291 (350)
|.+++ +|+.+
T Consensus 59 P~i~i---~g~~i 68 (79)
T TIGR02190 59 PQVFI---GGKLI 68 (79)
T ss_pred CeEEE---CCEEE
Confidence 99964 45543
No 348
>PHA03050 glutaredoxin; Provisional
Probab=96.20 E-value=0.019 Score=43.39 Aligned_cols=68 Identities=15% Similarity=0.240 Sum_probs=40.8
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
-++.|..+|||+|.+....|.++.-..+ .++++.|.-..+.. +....+.+..|.+.+|
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~-------------------~~~~~l~~~tG~~tVP 71 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPEN-------------------ELRDYFEQITGGRTVP 71 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCH-------------------HHHHHHHHHcCCCCcC
Confidence 5778899999999987776654421110 23444443211211 2234667777888999
Q ss_pred eEEEECCCCeEEe
Q 018808 120 HLVILDENGKVLS 132 (350)
Q Consensus 120 ~~~lid~~G~v~~ 132 (350)
.+++ +|+.+.
T Consensus 72 ~IfI---~g~~iG 81 (108)
T PHA03050 72 RIFF---GKTSIG 81 (108)
T ss_pred EEEE---CCEEEe
Confidence 9966 466553
No 349
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.15 E-value=0.012 Score=52.02 Aligned_cols=65 Identities=12% Similarity=0.257 Sum_probs=51.3
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
|||.||-+.++.|..+...|..|+.+|+. ++|+.|...... +...|.....|
T Consensus 149 VVVHiY~~~~~~C~~mn~~L~~LA~kyp~---vKFvkI~a~~~~-------------------------~~~~f~~~~LP 200 (265)
T PF02114_consen 149 VVVHIYEPGFPRCEIMNSCLECLARKYPE---VKFVKIRASKCP-------------------------ASENFPDKNLP 200 (265)
T ss_dssp EEEEEE-TTSCCHHHHHHHHHHHHHH-TT---SEEEEEEECGCC-------------------------TTTTS-TTC-S
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHhCCc---eEEEEEehhccC-------------------------cccCCcccCCC
Confidence 99999999999999999999999999984 889999764321 34458889999
Q ss_pred eEEEECCCCeEEec
Q 018808 120 HLVILDENGKVLSD 133 (350)
Q Consensus 120 ~~~lid~~G~v~~~ 133 (350)
+++++ ++|.++..
T Consensus 201 tllvY-k~G~l~~~ 213 (265)
T PF02114_consen 201 TLLVY-KNGDLIGN 213 (265)
T ss_dssp EEEEE-ETTEEEEE
T ss_pred EEEEE-ECCEEEEe
Confidence 99999 79988774
No 350
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=96.10 E-value=0.026 Score=45.86 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=42.6
Q ss_pred ceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC
Q 018808 29 DQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82 (350)
Q Consensus 29 ~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~ 82 (350)
..+.+..-.++ +|+.|+...||+|..+.+.+.++.+++-+.+++.++...+-..
T Consensus 3 ~~~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~ 57 (162)
T PF13462_consen 3 YDPTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLD 57 (162)
T ss_dssp TSEEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSS
T ss_pred CCCeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcccc
Confidence 34556667778 9999999999999999999999999996556788888877444
No 351
>PHA03050 glutaredoxin; Provisional
Probab=96.08 E-value=0.012 Score=44.60 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=38.8
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|..+|||+|......|.+. +-....++++-|.-..+..+ ...++.+..|...+|.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~----~i~~~~~~~i~i~~~~~~~~------------------~~~~l~~~tG~~tVP~ 72 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKF----SFKRGAYEIVDIKEFKPENE------------------LRDYFEQITGGRTVPR 72 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHc----CCCcCCcEEEECCCCCCCHH------------------HHHHHHHHcCCCCcCE
Confidence 5569999999998877766554 22111255554432111111 1245666778889999
Q ss_pred EEEECCCCCEE
Q 018808 281 LVIIGPDGKTL 291 (350)
Q Consensus 281 ~~lid~~G~i~ 291 (350)
+| || |+.+
T Consensus 73 If-I~--g~~i 80 (108)
T PHA03050 73 IF-FG--KTSI 80 (108)
T ss_pred EE-EC--CEEE
Confidence 84 43 4544
No 352
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.08 E-value=0.046 Score=40.80 Aligned_cols=72 Identities=17% Similarity=0.292 Sum_probs=50.9
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCC-c
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG-I 118 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~-~ 118 (350)
++|+=.++.||....-..+|.+.+....++ +.+..|.+=..++ ..+.++..|||.. .
T Consensus 22 ~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~--~~~y~l~v~~~R~--------------------vSn~IAe~~~V~HeS 79 (105)
T PF11009_consen 22 VLIFKHSTRCPISAMALREFEKFWEESPDE--IPVYYLDVIEYRP--------------------VSNAIAEDFGVKHES 79 (105)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHH--------------------HHHHHHHHHT----S
T ss_pred EEEEEeCCCChhhHHHHHHHHHHhhcCCcc--ceEEEEEEEeCch--------------------hHHHHHHHhCCCcCC
Confidence 666669999999999998998888887653 7777777654443 3458999999975 8
Q ss_pred ceEEEECCCCeEEecC
Q 018808 119 PHLVILDENGKVLSDG 134 (350)
Q Consensus 119 P~~~lid~~G~v~~~~ 134 (350)
|.++++ ++|++++..
T Consensus 80 PQ~ili-~~g~~v~~a 94 (105)
T PF11009_consen 80 PQVILI-KNGKVVWHA 94 (105)
T ss_dssp SEEEEE-ETTEEEEEE
T ss_pred CcEEEE-ECCEEEEEC
Confidence 999999 899999864
No 353
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.04 E-value=0.052 Score=37.75 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=38.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC-Ccc
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM-GIP 119 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-~~P 119 (350)
+..|..++||+|......|++ . ++.+-.++++.+.+. ...+.+.++.. .+|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~-~i~~~~i~i~~~~~~--------------------~~~~~~~~~~~~~vP 53 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------K-GVDYEEIDVDGDPAL--------------------REEMINRSGGRRTVP 53 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------C-CCcEEEEECCCCHHH--------------------HHHHHHHhCCCCccC
Confidence 466888999999997776654 2 255666666655332 12444555665 789
Q ss_pred eEEEECCCCeEEe
Q 018808 120 HLVILDENGKVLS 132 (350)
Q Consensus 120 ~~~lid~~G~v~~ 132 (350)
.+++ +|+.+.
T Consensus 54 ~v~i---~g~~ig 63 (75)
T cd03418 54 QIFI---GDVHIG 63 (75)
T ss_pred EEEE---CCEEEe
Confidence 7764 455543
No 354
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.04 E-value=0.017 Score=41.80 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=36.9
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcC--CCCc
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFE--LSTL 278 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~ 278 (350)
++.|..+|||+|.+....|.++..++. + +.+..++.+.+..+ ..++.+.+| ...+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~--i~~~~idi~~~~~~-------------------~~~l~~~~g~~~~tV 58 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--D--FEFRYIDIHAEGIS-------------------KADLEKTVGKPVETV 58 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--C--CcEEEEECCCCHHH-------------------HHHHHHHhCCCCCCc
Confidence 567889999999998888877644332 2 44555555432211 123455555 3789
Q ss_pred cEEEE
Q 018808 279 PTLVI 283 (350)
Q Consensus 279 P~~~l 283 (350)
|.+++
T Consensus 59 P~ifi 63 (86)
T TIGR02183 59 PQIFV 63 (86)
T ss_pred CeEEE
Confidence 99854
No 355
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.96 E-value=0.037 Score=38.54 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=34.6
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC-Ccc
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS-TLP 279 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~P 279 (350)
+..|..+|||+|......|++ .+ +.+-.++++.+.+. ..++.+.+|.. .+|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~i~i~~~~~~-------------------~~~~~~~~~~~~~vP 53 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KG--VDYEEIDVDGDPAL-------------------REEMINRSGGRRTVP 53 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CC--CcEEEEECCCCHHH-------------------HHHHHHHhCCCCccC
Confidence 456889999999987776654 23 44445555544322 13455566766 899
Q ss_pred EEEEEC
Q 018808 280 TLVIIG 285 (350)
Q Consensus 280 ~~~lid 285 (350)
.++ +|
T Consensus 54 ~v~-i~ 58 (75)
T cd03418 54 QIF-IG 58 (75)
T ss_pred EEE-EC
Confidence 764 43
No 356
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.89 E-value=0.029 Score=41.73 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=39.1
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
-++.|..+|||+|.+....|.++ + +.+-.+++|.+++. .+....+.+..|..++|
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~----~----i~~~~vdid~~~~~-----------------~~~~~~l~~~tg~~tvP 63 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTL----G----VNPAVHEIDKEPAG-----------------KDIENALSRLGCSPAVP 63 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHc----C----CCCEEEEcCCCccH-----------------HHHHHHHHHhcCCCCcC
Confidence 56778889999999877655533 1 33444555543221 11223455556788999
Q ss_pred eEEEECCCCeEEe
Q 018808 120 HLVILDENGKVLS 132 (350)
Q Consensus 120 ~~~lid~~G~v~~ 132 (350)
.+++ +|+.+.
T Consensus 64 ~Vfi---~g~~iG 73 (99)
T TIGR02189 64 AVFV---GGKLVG 73 (99)
T ss_pred eEEE---CCEEEc
Confidence 9865 465553
No 357
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.89 E-value=0.05 Score=38.51 Aligned_cols=60 Identities=18% Similarity=0.369 Sum_probs=40.5
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
.++-|..+|||+|.+....|.+ . .+.+..++++.+.+. ..+.+..|...+|
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~-------~-gi~y~~idi~~~~~~---------------------~~~~~~~g~~~vP 59 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKE-------K-GYDFEEIPLGNDARG---------------------RSLRAVTGATTVP 59 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHH-------c-CCCcEEEECCCChHH---------------------HHHHHHHCCCCcC
Confidence 6778899999999998777753 2 255556666654321 1344557888999
Q ss_pred eEEEECCCCeEE
Q 018808 120 HLVILDENGKVL 131 (350)
Q Consensus 120 ~~~lid~~G~v~ 131 (350)
.+++ +|+.+
T Consensus 60 ~i~i---~g~~i 68 (79)
T TIGR02190 60 QVFI---GGKLI 68 (79)
T ss_pred eEEE---CCEEE
Confidence 9975 56554
No 358
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.83 E-value=0.028 Score=39.68 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=33.8
Q ss_pred EEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEE
Q 018808 202 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 281 (350)
Q Consensus 202 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~ 281 (350)
..|+.+|||+|......|++. + +.+-.++++.+.+. ..++.+..|...+|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~-------~--i~~~~~di~~~~~~-------------------~~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK-------G--VTFTEIRVDGDPAL-------------------RDEMMQRSGRRTVPQI 53 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc-------C--CCcEEEEecCCHHH-------------------HHHHHHHhCCCCcCEE
Confidence 568899999999887777542 3 33333444433321 1345556678889997
Q ss_pred EE
Q 018808 282 VI 283 (350)
Q Consensus 282 ~l 283 (350)
++
T Consensus 54 ~i 55 (79)
T TIGR02181 54 FI 55 (79)
T ss_pred EE
Confidence 44
No 359
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.82 E-value=0.071 Score=36.98 Aligned_cols=61 Identities=20% Similarity=0.282 Sum_probs=40.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++-|..++||.|+.....|.+ . .+.+..++++.+.+ ...++.+..+...+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~-gi~~~~~di~~~~~--------------------~~~el~~~~g~~~vP~ 54 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------K-GLPYVEINIDIFPE--------------------RKAELEERTGSSVVPQ 54 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------C-CCceEEEECCCCHH--------------------HHHHHHHHhCCCCcCE
Confidence 456778999999997776664 2 36666677765543 2235666667677888
Q ss_pred EEEECCCCeEEe
Q 018808 121 LVILDENGKVLS 132 (350)
Q Consensus 121 ~~lid~~G~v~~ 132 (350)
+++ +|+.+.
T Consensus 55 v~i---~~~~iG 63 (73)
T cd03027 55 IFF---NEKLVG 63 (73)
T ss_pred EEE---CCEEEe
Confidence 865 455554
No 360
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=95.82 E-value=0.14 Score=39.01 Aligned_cols=114 Identities=15% Similarity=0.221 Sum_probs=75.3
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
..|.|+|-|.-.|=|.|..+-..|.++.+.+.+- ..|..|..|+. ..+.+.|++
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV-----------------------~~~~~~~~l 75 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEV-----------------------PDFVKMYEL 75 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchh-----------------------hhhhhhhcc
Confidence 3579999999999999999999999999998764 44555555422 457788999
Q ss_pred CCccEEEEE-CCCCCEEeccchhhhhhcCCccCCCCccchHHHHHHHHHHHhcccccceeccCCcCe
Q 018808 276 STLPTLVII-GPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDF 341 (350)
Q Consensus 276 ~~~P~~~li-d~~G~i~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 341 (350)
...|++.++ +...--+.-..|.. ..+.|.-+..+++.++.+..-.+..-...++....+|
T Consensus 76 ~~p~tvmfFfn~kHmkiD~gtgdn------~Kin~~~~~kq~~Idiie~iyRga~KGKgiV~sP~dy 136 (142)
T KOG3414|consen 76 YDPPTVMFFFNNKHMKIDLGTGDN------NKINFAFEDKQEFIDIIETIYRGARKGKGIVQSPKDY 136 (142)
T ss_pred cCCceEEEEEcCceEEEeeCCCCC------ceEEEEeccHHHHHHHHHHHHHhhhcCCeEEECCcch
Confidence 998887666 32222222222211 2345556677777766666555555555666665555
No 361
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.75 E-value=0.038 Score=39.87 Aligned_cols=65 Identities=18% Similarity=0.371 Sum_probs=39.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC--CCCc
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK--VMGI 118 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~~ 118 (350)
++.|..+|||+|.+....|.++..++. .+.+..++++.+... ...+...++ ..++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~--------------------~~~l~~~~g~~~~tV 58 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGIS--------------------KADLEKTVGKPVETV 58 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHH--------------------HHHHHHHhCCCCCCc
Confidence 567888999999998888776644322 245555665543211 113444455 3789
Q ss_pred ceEEEECCCCeEE
Q 018808 119 PHLVILDENGKVL 131 (350)
Q Consensus 119 P~~~lid~~G~v~ 131 (350)
|.+++ +|+.+
T Consensus 59 P~ifi---~g~~i 68 (86)
T TIGR02183 59 PQIFV---DEKHV 68 (86)
T ss_pred CeEEE---CCEEe
Confidence 99865 45554
No 362
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=95.75 E-value=0.087 Score=46.23 Aligned_cols=131 Identities=15% Similarity=0.158 Sum_probs=75.4
Q ss_pred cCccCCcee-ccCCceeecCC-CCCc--EEEEEecCCChhhhhhhHHHHHHHHHhccCC--CEEEEEEECCCCHH--HHH
Q 018808 16 SSSARDFLI-RSNGDQVKLDS-LKGK--IGLYFSASWCGPCQRFTPILAEVYNELSRQG--DFEVIFVSGDEDDE--AFK 87 (350)
Q Consensus 16 g~~~p~f~~-~~~g~~~~l~~-~~gk--~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~~v~i~~d~~~~--~~~ 87 (350)
.-..|+|.. +++|+.+++.+ ++|| +|..|+..|-..|..-- .....+.|.... +++++-|++-+..- -+.
T Consensus 98 AlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw--~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~ 175 (252)
T PF05176_consen 98 ALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSW--TSPFLEDFLQEPYGRVQIVEINLIENWLKSWLV 175 (252)
T ss_pred CCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHH--hhHHHHHHhhCCCCceEEEEEecchHHHHHHHH
Confidence 345788877 68888888865 7999 44445556655443211 113334444333 69999999865432 111
Q ss_pred hHHh--------cCCCcccccCChh-hHHHHHhhcCCC--CcceEEEECCCCeEEecCCccceecccCcCCCCChHHHHH
Q 018808 88 GYFS--------KMPWLAVPFSDSE-TRDKLDELFKVM--GIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKE 156 (350)
Q Consensus 88 ~~~~--------~~~~~~~~~~~~~-~~~~l~~~~~v~--~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~ 156 (350)
+++. ...|..+-+...+ ....+.+.+++. .+..++|+|.+|+|...+ +.+.+.+.+..
T Consensus 176 ~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWag-----------sG~At~~E~~~ 244 (252)
T PF05176_consen 176 KLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAG-----------SGPATPEELES 244 (252)
T ss_pred HHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCc-----------cCCCCHHHHHH
Confidence 2221 1123333222211 234677788875 467999999999999853 22356666665
Q ss_pred HHH
Q 018808 157 MKE 159 (350)
Q Consensus 157 l~~ 159 (350)
|..
T Consensus 245 L~k 247 (252)
T PF05176_consen 245 LWK 247 (252)
T ss_pred HHH
Confidence 554
No 363
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.73 E-value=0.035 Score=39.23 Aligned_cols=59 Identities=17% Similarity=0.322 Sum_probs=37.8
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceE
Q 018808 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121 (350)
Q Consensus 42 v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 121 (350)
..|+.+|||+|......|.+. .+.+-.++++.+.+. ..++.+..+..++|++
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~--------------------~~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPAL--------------------RDEMMQRSGRRTVPQI 53 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHH--------------------HHHHHHHhCCCCcCEE
Confidence 567889999999988777642 244555555555421 2245555677889997
Q ss_pred EEECCCCeEE
Q 018808 122 VILDENGKVL 131 (350)
Q Consensus 122 ~lid~~G~v~ 131 (350)
++ +|+.+
T Consensus 54 ~i---~g~~i 60 (79)
T TIGR02181 54 FI---GDVHV 60 (79)
T ss_pred EE---CCEEE
Confidence 55 45544
No 364
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=95.70 E-value=0.97 Score=37.26 Aligned_cols=128 Identities=23% Similarity=0.410 Sum_probs=78.3
Q ss_pred HHHhhcCCCCcceEEEECC-CCe-EEecCCccceecccCcCCCCChHHHHHHHHHHHHHHHhhchhhhcccccCCceecC
Q 018808 108 KLDELFKVMGIPHLVILDE-NGK-VLSDGGVEIIREYGVEGYPFTVERIKEMKEQEERAKREQSLRSVLTSHSRDFVISS 185 (350)
Q Consensus 108 ~l~~~~~v~~~P~~~lid~-~G~-v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~p~f~~~~ 185 (350)
.+++.+++.. |+++++.+ +++ +.+.+ . .++.+.+...+... ..|-+ ...
T Consensus 32 ~~~~~~~~~~-p~i~~~k~~~~~~~~y~~----------~--~~~~~~l~~fI~~~---------------~~P~v-~~~ 82 (184)
T PF13848_consen 32 ELAKKYGIKE-PTIVVYKKFDEKPVVYDG----------D--KFTPEELKKFIKKN---------------SFPLV-PEL 82 (184)
T ss_dssp HHHHHCTCSS-SEEEEEECTTTSEEEESS----------S--TTSHHHHHHHHHHH---------------SSTSC-EEE
T ss_pred HHHHHhCCCC-CcEEEeccCCCCceeccc----------c--cCCHHHHHHHHHHh---------------ccccc-ccc
Confidence 6788899988 99999965 233 33321 1 13556665555431 12332 111
Q ss_pred CCceeeccccCCCE-EEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCch
Q 018808 186 DGRKISVSDLEGKT-IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDK 264 (350)
Q Consensus 186 ~g~~v~l~~~~gk~-vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 264 (350)
+...+..---.+++ +++.|..............+.+++.+++++ +.++.+..+..
T Consensus 83 t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---~~f~~~d~~~~--------------------- 138 (184)
T PF13848_consen 83 TPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---INFVYVDADDF--------------------- 138 (184)
T ss_dssp STTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT---SEEEEEETTTT---------------------
T ss_pred chhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe---EEEEEeehHHh---------------------
Confidence 22211111112344 777776665666677778888888888765 77888776632
Q ss_pred hHHHHHHHcCCC--CccEEEEECCCCCE
Q 018808 265 SREKLARYFELS--TLPTLVIIGPDGKT 290 (350)
Q Consensus 265 ~~~~~~~~~~v~--~~P~~~lid~~G~i 290 (350)
..+.+.||+. .+|.+++++....-
T Consensus 139 --~~~~~~~~i~~~~~P~~vi~~~~~~~ 164 (184)
T PF13848_consen 139 --PRLLKYFGIDEDDLPALVIFDSNKGK 164 (184)
T ss_dssp --HHHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred --HHHHHHcCCCCccCCEEEEEECCCCc
Confidence 4477789987 89999999965543
No 365
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.70 E-value=0.038 Score=54.70 Aligned_cols=68 Identities=10% Similarity=0.132 Sum_probs=48.9
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
+.+. .+-.|.+++||+|......+.++....+ ++..-.|....-+ +++..|+
T Consensus 474 ~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~---~i~~~~i~~~~~~------------------------~~~~~~~ 526 (555)
T TIGR03143 474 ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP---NVEAEMIDVSHFP------------------------DLKDEYG 526 (555)
T ss_pred cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC---CceEEEEECcccH------------------------HHHHhCC
Confidence 3455 5666789999999988888877777643 2555555544333 6888999
Q ss_pred CCCcceEEEECCCCeEEec
Q 018808 115 VMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 115 v~~~P~~~lid~~G~v~~~ 133 (350)
|.++|++++ ||+++..
T Consensus 527 v~~vP~~~i---~~~~~~~ 542 (555)
T TIGR03143 527 IMSVPAIVV---DDQQVYF 542 (555)
T ss_pred ceecCEEEE---CCEEEEe
Confidence 999999998 5666653
No 366
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=95.68 E-value=0.094 Score=46.02 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=66.8
Q ss_pred ccCCc-eecCCCceeeccc-cCCCEEEEEEec-cCCccChhhHHHHHHHHHHHhcC-CCcEEEEEEeCCCCHH-H-HHHh
Q 018808 177 HSRDF-VISSDGRKISVSD-LEGKTIGLYFSM-SSYKASAEFTPRLVEVYEKLKGK-GESFEIVLISLDDEEE-S-FKRD 250 (350)
Q Consensus 177 ~~p~f-~~~~~g~~v~l~~-~~gk~vlv~f~~-~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vv~v~~d~~~~-~-~~~~ 250 (350)
..|+| ..+++|+.+++.+ ++||+.||..+. .|--.|...- .....+++... +..++++-|++.++.- . +...
T Consensus 100 yFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw--~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~~~ 177 (252)
T PF05176_consen 100 YFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSW--TSPFLEDFLQEPYGRVQIVEINLIENWLKSWLVKL 177 (252)
T ss_pred cCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHH--hhHHHHHHhhCCCCceEEEEEecchHHHHHHHHHH
Confidence 45666 4677888777754 689965554443 3432222211 11233333322 1259999999875432 1 1111
Q ss_pred h-cCC-------CCccccCCch--hHHHHHHHcCCCC--ccEEEEECCCCCEEeccchh
Q 018808 251 L-GSM-------PWLALPFKDK--SREKLARYFELST--LPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 251 ~-~~~-------~~~~~~~~~~--~~~~~~~~~~v~~--~P~~~lid~~G~i~~~~~~~ 297 (350)
+ ..+ .|..+-+..+ ....+.+.+++.. +..+||||++|+|++...|.
T Consensus 178 ~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWagsG~ 236 (252)
T PF05176_consen 178 FMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAGSGP 236 (252)
T ss_pred HhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCccCC
Confidence 1 111 1222212121 2457888888754 77899999999999999884
No 367
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.0055 Score=51.60 Aligned_cols=73 Identities=12% Similarity=0.174 Sum_probs=56.5
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
+++.+++.||+.||.+|..+...+..+.+..+ . +.++.+..+.. .++...+.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~--~--~~~~k~~a~~~-----------------------~eis~~~~v 68 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK--N--AQFLKLEAEEF-----------------------PEISNLIAV 68 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh--h--heeeeehhhhh-----------------------hHHHHHHHH
Confidence 67889999999999999999988888887772 2 66776655422 557888889
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.+.|+..++ ..|+.+.+-.+
T Consensus 69 ~~vp~~~~~-~~~~~v~~l~~ 88 (227)
T KOG0911|consen 69 EAVPYFVFF-FLGEKVDRLSG 88 (227)
T ss_pred hcCceeeee-ecchhhhhhhc
Confidence 999998888 66766655544
No 368
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.58 E-value=0.047 Score=37.80 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=35.0
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|..+|||+|.+....|.+ .+ +.+..++++.+.. ...+.+..|...+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~--i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NG--ISYEEIPLGKDIT--------------------GRSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cC--CCcEEEECCCChh--------------------HHHHHHHhCCCCcCe
Confidence 456888999999988666653 23 4444555553321 133555668889999
Q ss_pred EEEEC
Q 018808 281 LVIIG 285 (350)
Q Consensus 281 ~~lid 285 (350)
+ ++|
T Consensus 54 i-fi~ 57 (72)
T cd03029 54 V-FID 57 (72)
T ss_pred E-EEC
Confidence 7 454
No 369
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.46 E-value=0.037 Score=41.16 Aligned_cols=59 Identities=19% Similarity=0.179 Sum_probs=33.9
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
++.|..+|||+|.+....|.+. +- .+++ +.+|.+++.. .....+.+..|...+|.
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~----~i---~~~~--vdid~~~~~~----------------~~~~~l~~~tg~~tvP~ 64 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL----GV---NPAV--HEIDKEPAGK----------------DIENALSRLGCSPAVPA 64 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc----CC---CCEE--EEcCCCccHH----------------HHHHHHHHhcCCCCcCe
Confidence 4568889999998776655433 21 1444 4444322110 11134555567889999
Q ss_pred EEEEC
Q 018808 281 LVIIG 285 (350)
Q Consensus 281 ~~lid 285 (350)
+| ||
T Consensus 65 Vf-i~ 68 (99)
T TIGR02189 65 VF-VG 68 (99)
T ss_pred EE-EC
Confidence 74 53
No 370
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.43 E-value=0.081 Score=36.71 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=35.3
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
+..|..+|||.|++....|.+ .+ +.+..++++.+.+. ..++.+..+-..+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~g--i~~~~~di~~~~~~-------------------~~el~~~~g~~~vP~ 54 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KG--LPYVEINIDIFPER-------------------KAELEERTGSSVVPQ 54 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CC--CceEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 446788999999988776654 33 44555565543321 245666677778888
Q ss_pred EEE
Q 018808 281 LVI 283 (350)
Q Consensus 281 ~~l 283 (350)
+++
T Consensus 55 v~i 57 (73)
T cd03027 55 IFF 57 (73)
T ss_pred EEE
Confidence 743
No 371
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.38 E-value=0.031 Score=44.75 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=28.0
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHh
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLK 227 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~ 227 (350)
.++++|+.|+..+||+|+.+.+.+.++..++.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 46789999999999999999999998877664
No 372
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=95.32 E-value=0.13 Score=41.12 Aligned_cols=108 Identities=14% Similarity=0.225 Sum_probs=65.4
Q ss_pred CceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHH-HhcCCCcEEEEE-EeCCCC----HHHHHHhh----cCCCC
Q 018808 187 GRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEK-LKGKGESFEIVL-ISLDDE----EESFKRDL----GSMPW 256 (350)
Q Consensus 187 g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~-~~~~~~~~~vv~-v~~d~~----~~~~~~~~----~~~~~ 256 (350)
.+..+...+.||+-+|...|-.-..-..-.|.+..+.+. |+.. +++..+ |+.|+. ---.+..+ ++++|
T Consensus 27 y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d--~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~ 104 (160)
T PF09695_consen 27 YQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHD--KYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPW 104 (160)
T ss_pred ccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCcc--ceeEEEEEecccccccchHHHHHHHHHhhhhCCC
Confidence 345556678899999988876544433444556555544 4443 365554 455541 11222222 23455
Q ss_pred ccccCCchhHHHHHHHcCCCC-ccEEEEECCCCCEEeccchhh
Q 018808 257 LALPFKDKSREKLARYFELST-LPTLVIIGPDGKTLHSNVAEA 298 (350)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~v~~-~P~~~lid~~G~i~~~~~~~~ 298 (350)
-.+ ..|.++.+.+.+++.. --.++++|++|+|++...|.+
T Consensus 105 s~~--vlD~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k~G~L 145 (160)
T PF09695_consen 105 SQF--VLDSNGVVRKAWQLQEESSAIIVLDKQGKVQFVKEGAL 145 (160)
T ss_pred cEE--EEcCCCceeccccCCCCCceEEEEcCCccEEEEECCCC
Confidence 444 3455556777777653 357889999999999999866
No 373
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.32 E-value=0.039 Score=46.24 Aligned_cols=91 Identities=21% Similarity=0.394 Sum_probs=63.2
Q ss_pred CceeccCCceeecCCC-CCc--EEEE-E-ecC----CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHh
Q 018808 21 DFLIRSNGDQVKLDSL-KGK--IGLY-F-SAS----WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFS 91 (350)
Q Consensus 21 ~f~~~~~g~~~~l~~~-~gk--~~v~-F-~~~----~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~ 91 (350)
+..++....+.||++| .|+ ++|| | +.+ .|+-|...+.++.-....+... ++.++.|+- ...+++..+..
T Consensus 54 ~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~-dv~lv~VsR-APl~~l~~~k~ 131 (247)
T COG4312 54 DYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHH-DVTLVAVSR-APLEELVAYKR 131 (247)
T ss_pred eeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhc-CceEEEEec-CcHHHHHHHHH
Confidence 3445444558899986 566 5555 3 334 4999999999998888888777 488888874 46788999999
Q ss_pred cCCCcccccCChhhHHHHHhhcCC
Q 018808 92 KMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
.++|...-+++.+. .+-+.|.+
T Consensus 132 rmGW~f~w~Ss~~s--~Fn~Df~v 153 (247)
T COG4312 132 RMGWQFPWVSSTDS--DFNRDFQV 153 (247)
T ss_pred hcCCcceeEeccCc--cccccccc
Confidence 99998333443332 45555654
No 374
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.29 E-value=0.09 Score=37.46 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=34.6
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
+..|..+|||+|......|. +.| +.+-.++++.+++. .+..+..|...+|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~-------~~g--I~~~~idi~~~~~~--------------------~~~~~~~g~~~vPv 53 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAME-------SRG--FDFEMINVDRVPEA--------------------AETLRAQGFRQLPV 53 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHH-------HCC--CceEEEECCCCHHH--------------------HHHHHHcCCCCcCE
Confidence 45688899999988766663 345 55666666654332 11223357889999
Q ss_pred EEE
Q 018808 281 LVI 283 (350)
Q Consensus 281 ~~l 283 (350)
+++
T Consensus 54 v~i 56 (81)
T PRK10329 54 VIA 56 (81)
T ss_pred EEE
Confidence 865
No 375
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.26 E-value=0.13 Score=35.48 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=38.1
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
++.|..+|||+|.+....|.+ . .+.+..++++.+.+ ...+.+..|...+|.
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~-~i~~~~~~v~~~~~---------------------~~~~~~~~g~~~vP~ 53 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------N-GISYEEIPLGKDIT---------------------GRSLRAVTGAMTVPQ 53 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------c-CCCcEEEECCCChh---------------------HHHHHHHhCCCCcCe
Confidence 566888999999997766653 2 25566666654431 114455568889999
Q ss_pred EEEECCCCeEE
Q 018808 121 LVILDENGKVL 131 (350)
Q Consensus 121 ~~lid~~G~v~ 131 (350)
+++ +|+.+
T Consensus 54 ifi---~g~~i 61 (72)
T cd03029 54 VFI---DGELI 61 (72)
T ss_pred EEE---CCEEE
Confidence 854 45554
No 376
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.24 E-value=0.041 Score=44.02 Aligned_cols=38 Identities=29% Similarity=0.556 Sum_probs=30.2
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEE
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFV 77 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i 77 (350)
.++ +++.|+..+||+|..+.+.+.++..+++ ++.++..
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~---~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP---DVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC---CceEEEE
Confidence 466 8999999999999999999998887764 3445544
No 377
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.15 E-value=0.086 Score=38.37 Aligned_cols=65 Identities=20% Similarity=0.359 Sum_probs=37.5
Q ss_pred CCCEEEEEEec----cCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHH
Q 018808 196 EGKTIGLYFSM----SSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLAR 271 (350)
Q Consensus 196 ~gk~vlv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (350)
+++.|+|+--. +|||+|......|.+. + +.+..++++.+.+ ...++.+
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~--i~y~~idv~~~~~-------------------~~~~l~~ 57 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------G--VDFGTFDILEDEE-------------------VRQGLKE 57 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------C--CCeEEEEcCCCHH-------------------HHHHHHH
Confidence 34456665432 6999998876666443 2 3333444443322 1245666
Q ss_pred HcCCCCccEEEEECCCCCEE
Q 018808 272 YFELSTLPTLVIIGPDGKTL 291 (350)
Q Consensus 272 ~~~v~~~P~~~lid~~G~i~ 291 (350)
..|...+|.+| || |+.+
T Consensus 58 ~~g~~tvP~vf-i~--g~~i 74 (90)
T cd03028 58 YSNWPTFPQLY-VN--GELV 74 (90)
T ss_pred HhCCCCCCEEE-EC--CEEE
Confidence 67888999974 44 5443
No 378
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=95.11 E-value=0.083 Score=36.57 Aligned_cols=53 Identities=17% Similarity=0.267 Sum_probs=33.2
Q ss_pred EEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEE
Q 018808 202 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 281 (350)
Q Consensus 202 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~ 281 (350)
..|..++||+|+.....|.+ .+ +.+-.++++.+.+. ..++ +..|...+|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~~di~~~~~~-------------------~~~~-~~~g~~~vP~v 52 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HG--IAFEEINIDEQPEA-------------------IDYV-KAQGFRQVPVI 52 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEECCCCHHH-------------------HHHH-HHcCCcccCEE
Confidence 45788999999988777753 34 44555555544322 1223 34588889996
Q ss_pred EE
Q 018808 282 VI 283 (350)
Q Consensus 282 ~l 283 (350)
++
T Consensus 53 ~~ 54 (72)
T TIGR02194 53 VA 54 (72)
T ss_pred EE
Confidence 44
No 379
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=95.11 E-value=0.38 Score=37.24 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=71.1
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
..|+|+|-|...|=|.|..+-..|.+++++.+.- ..|..|..++- ..+.+.|.+
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~V-----------------------pdfn~~yel 72 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEV-----------------------PDFNQMYEL 72 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTT-----------------------HCCHHHTTS
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccc-----------------------hhhhccccc
Confidence 4689999999999999999999999999998764 56666666632 235677888
Q ss_pred CCccEEEEECCCCCEEeccchhhhhhcCCccCCCCccchHHHHHHHHHHHhcccccceeccCCcCe
Q 018808 276 STLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVLVSGDLDF 341 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~ 341 (350)
. .|.++++==+++-+....|.. .-..+.|.-+..+++..+.+..-.+......++....+|
T Consensus 73 ~-dP~tvmFF~rnkhm~vD~Gtg----nnnKin~~~~~kqe~iDiie~iyrga~kGk~iv~sP~dy 133 (133)
T PF02966_consen 73 Y-DPCTVMFFFRNKHMMVDFGTG----NNNKINWAFEDKQEFIDIIETIYRGARKGKGIVVSPKDY 133 (133)
T ss_dssp --SSEEEEEEETTEEEEEESSSS----SSSSBCS--SCHHHHHHHHHHHHHHHHTT-SEEE-SS-G
T ss_pred C-CCeEEEEEecCeEEEEEecCC----CccEEEEEcCcHHHHHHHHHHHHHHhhcCCeeEeCCCCC
Confidence 7 776544422344443333311 112466777777777777776555555555555555554
No 380
>PRK10638 glutaredoxin 3; Provisional
Probab=95.07 E-value=0.16 Score=36.21 Aligned_cols=61 Identities=15% Similarity=0.269 Sum_probs=39.5
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
+..|..+|||+|.+....|.+. .+.+..++++.+.+ ....+.+..+...+|.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~--------------------~~~~l~~~~g~~~vP~ 55 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAA--------------------KREEMIKRSGRTTVPQ 55 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHH--------------------HHHHHHHHhCCCCcCE
Confidence 4566779999999987776642 25555666665532 1224556667788997
Q ss_pred EEEECCCCeEEe
Q 018808 121 LVILDENGKVLS 132 (350)
Q Consensus 121 ~~lid~~G~v~~ 132 (350)
+++ +|+.+.
T Consensus 56 i~~---~g~~ig 64 (83)
T PRK10638 56 IFI---DAQHIG 64 (83)
T ss_pred EEE---CCEEEe
Confidence 755 466654
No 381
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.04 E-value=0.17 Score=37.42 Aligned_cols=62 Identities=27% Similarity=0.432 Sum_probs=38.4
Q ss_pred EEEEEec----CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 40 IGLYFSA----SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 40 ~~v~F~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
++|+-.. +|||+|.+....|.++ .+.+..++++.+.+ ....+.+..|.
T Consensus 14 Vvvf~kg~~~~~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~--------------------~~~~l~~~tg~ 65 (97)
T TIGR00365 14 VVLYMKGTPQFPQCGFSARAVQILKAC--------GVPFAYVNVLEDPE--------------------IRQGIKEYSNW 65 (97)
T ss_pred EEEEEccCCCCCCCchHHHHHHHHHHc--------CCCEEEEECCCCHH--------------------HHHHHHHHhCC
Confidence 5655442 8999999977766543 24455566654432 22355555677
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
..+|.+++ +|+.+.
T Consensus 66 ~tvP~vfi---~g~~iG 79 (97)
T TIGR00365 66 PTIPQLYV---KGEFVG 79 (97)
T ss_pred CCCCEEEE---CCEEEe
Confidence 88898876 466543
No 382
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.094 Score=41.37 Aligned_cols=103 Identities=15% Similarity=0.254 Sum_probs=69.0
Q ss_pred eeeccc-cCCCEEEEE-EeccCCccChh-hHHHHHHHHHHHhcCCCcE-EEEEEeCCCCHHHHHHhhcCCCCc-cccCCc
Q 018808 189 KISVSD-LEGKTIGLY-FSMSSYKASAE-FTPRLVEVYEKLKGKGESF-EIVLISLDDEEESFKRDLGSMPWL-ALPFKD 263 (350)
Q Consensus 189 ~v~l~~-~~gk~vlv~-f~~~~C~~C~~-~~~~l~~~~~~~~~~~~~~-~vv~v~~d~~~~~~~~~~~~~~~~-~~~~~~ 263 (350)
.++.++ ++||.|+|+ .-+...|.|.. .+|...+++.+++.+| + +|+.|+++ +.--+.++.+....- ++.++.
T Consensus 28 ~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kG--VD~I~cVSVN-D~FVm~AWak~~g~~~~I~fi~ 104 (165)
T COG0678 28 DVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKG--VDEIYCVSVN-DAFVMNAWAKSQGGEGNIKFIP 104 (165)
T ss_pred cccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcC--CceEEEEEeC-cHHHHHHHHHhcCCCccEEEec
Confidence 344444 578765553 34557788877 8999999999999988 3 46667777 444445555443322 566778
Q ss_pred hhHHHHHHHcCC-----------CCccEEEEECCCCCEEeccc
Q 018808 264 KSREKLARYFEL-----------STLPTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 264 ~~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~~ 295 (350)
|.+.++.+.+|. ++.-...++ .||.|..-..
T Consensus 105 Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~i 146 (165)
T COG0678 105 DGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFI 146 (165)
T ss_pred CCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEEe
Confidence 888888888864 445556677 8888776554
No 383
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=94.97 E-value=0.1 Score=38.61 Aligned_cols=59 Identities=20% Similarity=0.353 Sum_probs=34.9
Q ss_pred CEEEEEEe----ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 198 KTIGLYFS----MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 198 k~vlv~f~----~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
..|+|+-. .+|||+|......|.+. + +.+..+.++++.+. ..++.+..
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-------~--i~~~~~di~~~~~~-------------------~~~l~~~t 63 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKAC-------G--VPFAYVNVLEDPEI-------------------RQGIKEYS 63 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHc-------C--CCEEEEECCCCHHH-------------------HHHHHHHh
Confidence 44555544 38999998776666443 2 33444555433221 23455666
Q ss_pred CCCCccEEEEEC
Q 018808 274 ELSTLPTLVIIG 285 (350)
Q Consensus 274 ~v~~~P~~~lid 285 (350)
|...+|.+| ||
T Consensus 64 g~~tvP~vf-i~ 74 (97)
T TIGR00365 64 NWPTIPQLY-VK 74 (97)
T ss_pred CCCCCCEEE-EC
Confidence 778899886 44
No 384
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.97 E-value=0.011 Score=50.06 Aligned_cols=69 Identities=16% Similarity=0.252 Sum_probs=50.9
Q ss_pred EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCc
Q 018808 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTL 278 (350)
Q Consensus 199 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 278 (350)
-.++.|+++|||.|....+.+..++.--.+-+ +.+-.|.+-.+ --+.-+|=+.++
T Consensus 41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~--v~va~VDvt~n-----------------------pgLsGRF~vtaL 95 (248)
T KOG0913|consen 41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDLG--VKVAKVDVTTN-----------------------PGLSGRFLVTAL 95 (248)
T ss_pred HHHHHhcCCCCccccchHHHHhccCCccCCCc--eeEEEEEEEec-----------------------cccceeeEEEec
Confidence 35678999999999999999988876655555 55555543311 125667778999
Q ss_pred cEEEEECCCCCEEec
Q 018808 279 PTLVIIGPDGKTLHS 293 (350)
Q Consensus 279 P~~~lid~~G~i~~~ 293 (350)
|++|-+ .+|.....
T Consensus 96 ptIYHv-kDGeFrry 109 (248)
T KOG0913|consen 96 PTIYHV-KDGEFRRY 109 (248)
T ss_pred ceEEEe-eccccccc
Confidence 999999 99976643
No 385
>PRK10638 glutaredoxin 3; Provisional
Probab=94.92 E-value=0.12 Score=36.84 Aligned_cols=60 Identities=17% Similarity=0.268 Sum_probs=36.9
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
+..|..+|||+|......|.+. + +.+..++++.+.+. ..++.+..|...+|.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-------g--i~y~~~dv~~~~~~-------------------~~~l~~~~g~~~vP~ 55 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-------G--VSFQEIPIDGDAAK-------------------REEMIKRSGRTTVPQ 55 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C--CCcEEEECCCCHHH-------------------HHHHHHHhCCCCcCE
Confidence 4467789999998877766542 3 33444555533221 234566668889997
Q ss_pred EEEECCCCCEE
Q 018808 281 LVIIGPDGKTL 291 (350)
Q Consensus 281 ~~lid~~G~i~ 291 (350)
+++ +|+.+
T Consensus 56 i~~---~g~~i 63 (83)
T PRK10638 56 IFI---DAQHI 63 (83)
T ss_pred EEE---CCEEE
Confidence 744 36555
No 386
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=94.90 E-value=0.21 Score=36.32 Aligned_cols=55 Identities=25% Similarity=0.410 Sum_probs=34.6
Q ss_pred CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECC
Q 018808 47 SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDE 126 (350)
Q Consensus 47 ~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~ 126 (350)
+|||+|......|.+. .+.+-.++++.+.+ ....+.+..|...+|.+++
T Consensus 21 ~~Cp~C~~ak~~L~~~--------~i~y~~idv~~~~~--------------------~~~~l~~~~g~~tvP~vfi--- 69 (90)
T cd03028 21 PRCGFSRKVVQILNQL--------GVDFGTFDILEDEE--------------------VRQGLKEYSNWPTFPQLYV--- 69 (90)
T ss_pred CCCcHHHHHHHHHHHc--------CCCeEEEEcCCCHH--------------------HHHHHHHHhCCCCCCEEEE---
Confidence 6999999977666543 14455555554432 2336666678888999855
Q ss_pred CCeEEe
Q 018808 127 NGKVLS 132 (350)
Q Consensus 127 ~G~v~~ 132 (350)
+|+.+.
T Consensus 70 ~g~~iG 75 (90)
T cd03028 70 NGELVG 75 (90)
T ss_pred CCEEEe
Confidence 466543
No 387
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=94.88 E-value=0.087 Score=40.24 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=36.8
Q ss_pred HHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 219 LVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 219 l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
|.+...++.+.| +.++.|.+.+ .+..++|++... .++++..|++..+-+.+|+
T Consensus 2 L~~~~~~l~~~g--v~lv~I~~g~-~~~~~~f~~~~~-~p~~ly~D~~~~lY~~lg~ 54 (115)
T PF13911_consen 2 LSRRKPELEAAG--VKLVVIGCGS-PEGIEKFCELTG-FPFPLYVDPERKLYKALGL 54 (115)
T ss_pred hhHhHHHHHHcC--CeEEEEEcCC-HHHHHHHHhccC-CCCcEEEeCcHHHHHHhCC
Confidence 445566777777 8899998874 434777776544 5777777777777777765
No 388
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.79 E-value=0.098 Score=42.36 Aligned_cols=51 Identities=14% Similarity=0.158 Sum_probs=39.3
Q ss_pred eeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 018808 190 ISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241 (350)
Q Consensus 190 v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d 241 (350)
..+-.-..+++|+.|+...||+|..+.+.+.++.+++-+.| ++.++.+.+-
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~ 55 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVP 55 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESS
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEcc
Confidence 33445566899999999999999999999999999983332 4888888773
No 389
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.68 E-value=0.068 Score=44.02 Aligned_cols=73 Identities=14% Similarity=0.220 Sum_probs=61.8
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
+..-|++.||-+.-..|+-+-..|..++..+-+ ..++-|+.... + -+..+++|
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~--------------P---------Flv~kL~I 135 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKA--------------P---------FLVTKLNI 135 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccC--------------c---------eeeeeeee
Confidence 456899999999888999999999999988865 56888887632 1 26789999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
.-+|++.++ .+|+.+.+.+|
T Consensus 136 kVLP~v~l~-k~g~~~D~iVG 155 (211)
T KOG1672|consen 136 KVLPTVALF-KNGKTVDYVVG 155 (211)
T ss_pred eEeeeEEEE-EcCEEEEEEee
Confidence 999999999 99999988877
No 390
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=0.11 Score=36.81 Aligned_cols=20 Identities=5% Similarity=-0.109 Sum_probs=15.4
Q ss_pred EEEEeccCCccChhhHHHHH
Q 018808 201 GLYFSMSSYKASAEFTPRLV 220 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~ 220 (350)
+..|.-++||+|.+....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45677889999988766664
No 391
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.089 Score=51.76 Aligned_cols=77 Identities=23% Similarity=0.347 Sum_probs=50.0
Q ss_pred CCCEEEEEEeccCCccChhhH------HHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHH
Q 018808 196 EGKTIGLYFSMSSYKASAEFT------PRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 269 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~------~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (350)
.+|+++|...++||.+|.-|. |.+.++.++ . +|.|-+|..+. |.....-..+
T Consensus 42 edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~---~-----FV~IKVDREER--------------PDvD~~Ym~~ 99 (667)
T COG1331 42 EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE---N-----FVPVKVDREER--------------PDVDSLYMNA 99 (667)
T ss_pred hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh---C-----ceeeeEChhhc--------------cCHHHHHHHH
Confidence 578999999999999999887 344444332 2 56666664321 1111111233
Q ss_pred HHHc-CCCCccEEEEECCCCCEEecc
Q 018808 270 ARYF-ELSTLPTLVIIGPDGKTLHSN 294 (350)
Q Consensus 270 ~~~~-~v~~~P~~~lid~~G~i~~~~ 294 (350)
++.. |-.++|-++++-|||+..+..
T Consensus 100 ~q~~tG~GGWPLtVfLTPd~kPFfag 125 (667)
T COG1331 100 SQAITGQGGWPLTVFLTPDGKPFFAG 125 (667)
T ss_pred HHHhccCCCCceeEEECCCCceeeee
Confidence 3333 456899999999999998654
No 392
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.53 E-value=0.14 Score=50.20 Aligned_cols=67 Identities=16% Similarity=0.235 Sum_probs=48.1
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
+.+. -+..|.++.||+|+.....+.++...-+ ++..-.|..... .+++..|+
T Consensus 114 ~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~---~i~~~~id~~~~------------------------~~~~~~~~ 166 (517)
T PRK15317 114 LDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP---NITHTMIDGALF------------------------QDEVEARN 166 (517)
T ss_pred cCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC---CceEEEEEchhC------------------------HhHHHhcC
Confidence 3455 7888999999999998888888777533 355555543333 36888999
Q ss_pred CCCcceEEEECCCCeEEe
Q 018808 115 VMGIPHLVILDENGKVLS 132 (350)
Q Consensus 115 v~~~P~~~lid~~G~v~~ 132 (350)
+.++|++++ +|+.++
T Consensus 167 v~~VP~~~i---~~~~~~ 181 (517)
T PRK15317 167 IMAVPTVFL---NGEEFG 181 (517)
T ss_pred CcccCEEEE---CCcEEE
Confidence 999999987 344444
No 393
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.39 E-value=0.18 Score=34.87 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=34.7
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceE
Q 018808 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121 (350)
Q Consensus 42 v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 121 (350)
..|..++||+|+.....|.+ . .+.+-.++++.+.+. ...+.. .|..++|.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~-~i~~~~~di~~~~~~--------------------~~~~~~-~g~~~vP~v 52 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------H-GIAFEEINIDEQPEA--------------------IDYVKA-QGFRQVPVI 52 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------C-CCceEEEECCCCHHH--------------------HHHHHH-cCCcccCEE
Confidence 45777999999998877753 2 356666676655431 113333 477889997
Q ss_pred EE
Q 018808 122 VI 123 (350)
Q Consensus 122 ~l 123 (350)
++
T Consensus 53 ~~ 54 (72)
T TIGR02194 53 VA 54 (72)
T ss_pred EE
Confidence 65
No 394
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.25 Score=35.11 Aligned_cols=57 Identities=19% Similarity=0.364 Sum_probs=34.9
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
+..|.-++||+|.+....|.+ ++ +.+..+.++..... +....+.+..|.+.+|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~-------~g-~~~~~i~~~~~~~~------------------~~~~~~~~~~g~~tvP~ 56 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDR-------KG-VDYEEIDVDDDEPE------------------EAREMVKRGKGQRTVPQ 56 (80)
T ss_pred EEEEECCCCchHHHHHHHHHH-------cC-CCcEEEEecCCcHH------------------HHHHHHHHhCCCCCcCE
Confidence 456777899999987766652 32 55555555444310 11123444448899999
Q ss_pred EEE
Q 018808 121 LVI 123 (350)
Q Consensus 121 ~~l 123 (350)
+++
T Consensus 57 I~i 59 (80)
T COG0695 57 IFI 59 (80)
T ss_pred EEE
Confidence 888
No 395
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.86 E-value=0.4 Score=37.91 Aligned_cols=116 Identities=20% Similarity=0.253 Sum_probs=70.1
Q ss_pred hhcCccCCceecc---C-----CceeecCCC-CCcEEEEEec--CCChhhhh-hhHHHHHHHHHhccCCCEEEEEEECCC
Q 018808 14 LLSSSARDFLIRS---N-----GDQVKLDSL-KGKIGLYFSA--SWCGPCQR-FTPILAEVYNELSRQGDFEVIFVSGDE 81 (350)
Q Consensus 14 ~~g~~~p~f~~~~---~-----g~~~~l~~~-~gk~~v~F~~--~~C~~C~~-~~~~l~~l~~~~~~~~~~~~v~i~~d~ 81 (350)
.+|++.|..++.. + -..++..++ +||.+|-|-. ...|.|.. .+|.+.+++.++.+++-=.++.|++++
T Consensus 4 ~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVND 83 (165)
T COG0678 4 MVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVND 83 (165)
T ss_pred ccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeCc
Confidence 4699999988832 1 234555564 6675555544 45789974 899999999999998744566667665
Q ss_pred C--HHHHHhHHhcCCCcccccCChhhHHHHHhhc-----------CCCCcceEEEECCCCeEEec
Q 018808 82 D--DEAFKGYFSKMPWLAVPFSDSETRDKLDELF-----------KVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 82 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------~v~~~P~~~lid~~G~v~~~ 133 (350)
. ...|.+.....+ .+-+. +|-+.++++.. |+++.-+..++ .||.|.+-
T Consensus 84 ~FVm~AWak~~g~~~--~I~fi-~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~ 144 (165)
T COG0678 84 AFVMNAWAKSQGGEG--NIKFI-PDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKL 144 (165)
T ss_pred HHHHHHHHHhcCCCc--cEEEe-cCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEE
Confidence 3 223333322221 11111 22233555544 35666777777 78888763
No 396
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.53 E-value=0.42 Score=33.99 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=35.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcce
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPH 120 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~ 120 (350)
+.-|..+|||+|.+....|.+ ++ +.+-.++++.+++.. ..+. ..|...+|.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~g-I~~~~idi~~~~~~~--------------------~~~~-~~g~~~vPv 53 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RG-FDFEMINVDRVPEAA--------------------ETLR-AQGFRQLPV 53 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CC-CceEEEECCCCHHHH--------------------HHHH-HcCCCCcCE
Confidence 456778999999997776643 33 667777777654321 1232 247788998
Q ss_pred EEE
Q 018808 121 LVI 123 (350)
Q Consensus 121 ~~l 123 (350)
+++
T Consensus 54 v~i 56 (81)
T PRK10329 54 VIA 56 (81)
T ss_pred EEE
Confidence 866
No 397
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.46 E-value=0.64 Score=34.78 Aligned_cols=65 Identities=28% Similarity=0.463 Sum_probs=40.2
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
-+|.|.-+||++|.+....| ..+.. ...++.+.-+.+..+++ +.+.+.-+.+.+|
T Consensus 15 ~VVifSKs~C~~c~~~k~ll----~~~~v--~~~vvELD~~~~g~eiq-------------------~~l~~~tg~~tvP 69 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELL----SDLGV--NPKVVELDEDEDGSEIQ-------------------KALKKLTGQRTVP 69 (104)
T ss_pred CEEEEECCcCchHHHHHHHH----HhCCC--CCEEEEccCCCCcHHHH-------------------HHHHHhcCCCCCC
Confidence 57888899999999844333 33332 34555554443333333 3455555667899
Q ss_pred eEEEECCCCeEEe
Q 018808 120 HLVILDENGKVLS 132 (350)
Q Consensus 120 ~~~lid~~G~v~~ 132 (350)
.++| +|+.+.
T Consensus 70 ~vFI---~Gk~iG 79 (104)
T KOG1752|consen 70 NVFI---GGKFIG 79 (104)
T ss_pred EEEE---CCEEEc
Confidence 9888 677663
No 398
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=0.34 Score=33.32 Aligned_cols=73 Identities=22% Similarity=0.339 Sum_probs=46.4
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceE
Q 018808 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHL 121 (350)
Q Consensus 42 v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~ 121 (350)
+-|++.-||.|.....+|.++ ++.+=.|++-.+..++++|+.-.. ..+-. .=.+.+|..++|.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl--------~v~yd~VeIt~Sm~NlKrFl~lRD--s~~~F------d~vk~~gyiGIPal 68 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL--------NVDYDFVEITESMANLKRFLHLRD--SRPEF------DEVKSNGYIGIPAL 68 (85)
T ss_pred eeeccccCcchHHHHHHHHHc--------CCCceeeehhhhhhhHHHHHhhhc--cchhH------HhhhhcCcccceEE
Confidence 458888999999877777654 233334444557777888876432 00000 22456788899988
Q ss_pred EEECCCCeEEe
Q 018808 122 VILDENGKVLS 132 (350)
Q Consensus 122 ~lid~~G~v~~ 132 (350)
.+ ++|+++-
T Consensus 69 l~--~d~~vVl 77 (85)
T COG4545 69 LT--DDGKVVL 77 (85)
T ss_pred Ee--CCCcEEE
Confidence 77 6777764
No 399
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.11 E-value=0.15 Score=42.77 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=67.1
Q ss_pred ecCCCceeeccc-cCCCEEEEE---E----eccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCC
Q 018808 183 ISSDGRKISVSD-LEGKTIGLY---F----SMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSM 254 (350)
Q Consensus 183 ~~~~g~~v~l~~-~~gk~vlv~---f----~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~ 254 (350)
.+.+| ..+|.+ |.||--||. + |..-||-|...+..+......+...+ +.+++|+-- ..+++..+...+
T Consensus 58 e~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~d--v~lv~VsRA-Pl~~l~~~k~rm 133 (247)
T COG4312 58 ETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHD--VTLVAVSRA-PLEELVAYKRRM 133 (247)
T ss_pred ecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcC--ceEEEEecC-cHHHHHHHHHhc
Confidence 34555 577777 477744433 2 34479999999999988888888877 999999865 778889999999
Q ss_pred CCccccCCchhHHHHHHHcCC
Q 018808 255 PWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~v 275 (350)
+|- ||..+..+..+-+.|.+
T Consensus 134 GW~-f~w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 134 GWQ-FPWVSSTDSDFNRDFQV 153 (247)
T ss_pred CCc-ceeEeccCccccccccc
Confidence 987 88888777778888865
No 400
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=92.75 E-value=0.17 Score=41.66 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=33.7
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEe
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLIS 239 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~ 239 (350)
.+++.|+.|+...||+|+.+.+.+.++..+++.+ +.+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~---v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKD---VKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCC---ceEEEcC
Confidence 5789999999999999999999999999888543 5554444
No 401
>PRK10824 glutaredoxin-4; Provisional
Probab=92.57 E-value=0.17 Score=38.66 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=17.0
Q ss_pred CEEEEEEec----cCCccChhhHHHHHHH
Q 018808 198 KTIGLYFSM----SSYKASAEFTPRLVEV 222 (350)
Q Consensus 198 k~vlv~f~~----~~C~~C~~~~~~l~~~ 222 (350)
..|+|+--+ +|||+|......|.+.
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 455555444 5999999887766554
No 402
>PRK10824 glutaredoxin-4; Provisional
Probab=92.22 E-value=0.75 Score=35.12 Aligned_cols=62 Identities=19% Similarity=0.329 Sum_probs=37.0
Q ss_pred EEEEEec----CCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCC
Q 018808 40 IGLYFSA----SWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKV 115 (350)
Q Consensus 40 ~~v~F~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 115 (350)
++|+--. +|||+|.+....|..+ . +.+-.++++.+.+ ....+.+.-|-
T Consensus 17 Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~----~----i~~~~idi~~d~~--------------------~~~~l~~~sg~ 68 (115)
T PRK10824 17 ILLYMKGSPKLPSCGFSAQAVQALSAC----G----ERFAYVDILQNPD--------------------IRAELPKYANW 68 (115)
T ss_pred EEEEECCCCCCCCCchHHHHHHHHHHc----C----CCceEEEecCCHH--------------------HHHHHHHHhCC
Confidence 5555443 5999999977666543 2 2233344444432 12245555577
Q ss_pred CCcceEEEECCCCeEEe
Q 018808 116 MGIPHLVILDENGKVLS 132 (350)
Q Consensus 116 ~~~P~~~lid~~G~v~~ 132 (350)
+.+|.+++ +|+.+.
T Consensus 69 ~TVPQIFI---~G~~IG 82 (115)
T PRK10824 69 PTFPQLWV---DGELVG 82 (115)
T ss_pred CCCCeEEE---CCEEEc
Confidence 88999888 677664
No 403
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.20 E-value=0.38 Score=47.18 Aligned_cols=61 Identities=15% Similarity=0.230 Sum_probs=44.0
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
+.+. -+-.|..+.||+|+.....+.++....+ ++..-.+..... .++..+|+
T Consensus 115 ~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p---~i~~~~id~~~~------------------------~~~~~~~~ 167 (515)
T TIGR03140 115 LNGPLHFETYVSLTCQNCPDVVQALNQMALLNP---NISHTMIDGALF------------------------QDEVEALG 167 (515)
T ss_pred cCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC---CceEEEEEchhC------------------------HHHHHhcC
Confidence 4556 7888999999999988877877766643 244444433322 26788899
Q ss_pred CCCcceEEE
Q 018808 115 VMGIPHLVI 123 (350)
Q Consensus 115 v~~~P~~~l 123 (350)
+.++|++++
T Consensus 168 v~~VP~~~i 176 (515)
T TIGR03140 168 IQGVPAVFL 176 (515)
T ss_pred CcccCEEEE
Confidence 999999987
No 404
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=0.44 Score=35.65 Aligned_cols=63 Identities=24% Similarity=0.330 Sum_probs=34.3
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
+|.|..+|||+|...- ++...+. +....+.+|..++ .......+.+.-|...+|.
T Consensus 16 VVifSKs~C~~c~~~k----~ll~~~~-----v~~~vvELD~~~~----------------g~eiq~~l~~~tg~~tvP~ 70 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAK----ELLSDLG-----VNPKVVELDEDED----------------GSEIQKALKKLTGQRTVPN 70 (104)
T ss_pred EEEEECCcCchHHHHH----HHHHhCC-----CCCEEEEccCCCC----------------cHHHHHHHHHhcCCCCCCE
Confidence 3458889999998743 3333333 3334444453211 1112233444456678998
Q ss_pred EEEECCCCCEE
Q 018808 281 LVIIGPDGKTL 291 (350)
Q Consensus 281 ~~lid~~G~i~ 291 (350)
+||= |+.+
T Consensus 71 vFI~---Gk~i 78 (104)
T KOG1752|consen 71 VFIG---GKFI 78 (104)
T ss_pred EEEC---CEEE
Confidence 8874 6655
No 405
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=91.71 E-value=0.65 Score=36.99 Aligned_cols=79 Identities=25% Similarity=0.376 Sum_probs=50.7
Q ss_pred hhcCccCCceec---c-----CCceeecCCC-CCcEEEEE--ecCCChhh-hhhhHHHHHHHHHhccCCCEEEEEEECCC
Q 018808 14 LLSSSARDFLIR---S-----NGDQVKLDSL-KGKIGLYF--SASWCGPC-QRFTPILAEVYNELSRQGDFEVIFVSGDE 81 (350)
Q Consensus 14 ~~g~~~p~f~~~---~-----~g~~~~l~~~-~gk~~v~F--~~~~C~~C-~~~~~~l~~l~~~~~~~~~~~~v~i~~d~ 81 (350)
-+|+..|+.++. . .+.+++++++ +||.+|.| -....|.| +...|.+.+-.++++.++-=+++.+++|+
T Consensus 10 ~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSVnD 89 (171)
T KOG0541|consen 10 AVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSVND 89 (171)
T ss_pred cccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEecCc
Confidence 358889983322 2 2238888885 77733334 34456774 68899999999999988756677778775
Q ss_pred CHHHHHhHHhcC
Q 018808 82 DDEAFKGYFSKM 93 (350)
Q Consensus 82 ~~~~~~~~~~~~ 93 (350)
. -.+..|.+.+
T Consensus 90 p-Fv~~aW~k~~ 100 (171)
T KOG0541|consen 90 P-FVMKAWAKSL 100 (171)
T ss_pred H-HHHHHHHhhc
Confidence 4 2333444333
No 406
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=91.61 E-value=0.038 Score=46.93 Aligned_cols=71 Identities=21% Similarity=0.362 Sum_probs=47.9
Q ss_pred CCcEEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 37 KGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 37 ~gk~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
.|..++.|+++|||.|....|.+.+...--.+ -.+.+..|.+.... -+.-.|-+.
T Consensus 39 ~gewmi~~~ap~~psc~~~~~~~~~~a~~s~d-L~v~va~VDvt~np------------------------gLsGRF~vt 93 (248)
T KOG0913|consen 39 TGEWMIEFGAPWCPSCSDLIPHLENFATVSLD-LGVKVAKVDVTTNP------------------------GLSGRFLVT 93 (248)
T ss_pred chHHHHHhcCCCCccccchHHHHhccCCccCC-CceeEEEEEEEecc------------------------ccceeeEEE
Confidence 33388999999999999999988765433222 23555555433222 355567788
Q ss_pred CcceEEEECCCCeEEec
Q 018808 117 GIPHLVILDENGKVLSD 133 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~ 133 (350)
..|++|=+ .+|....+
T Consensus 94 aLptIYHv-kDGeFrry 109 (248)
T KOG0913|consen 94 ALPTIYHV-KDGEFRRY 109 (248)
T ss_pred ecceEEEe-eccccccc
Confidence 99999988 78876543
No 407
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=91.26 E-value=0.94 Score=35.46 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=48.9
Q ss_pred CEEEEEEecc--CCc-cCh-hhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHc
Q 018808 198 KTIGLYFSMS--SYK-ASA-EFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYF 273 (350)
Q Consensus 198 k~vlv~f~~~--~C~-~C~-~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (350)
..-+|.|... .|. .+. .....|.++++++++++ +.++.++.++. ..+.+.|
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~--i~Fv~vd~~~~-----------------------~~~~~~f 75 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKP--WGWLWTEAGAQ-----------------------LDLEEAL 75 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCc--EEEEEEeCccc-----------------------HHHHHHc
Confidence 4666666543 243 233 34678889999998876 88888877642 3378889
Q ss_pred CCC--CccEEEEECCCCCEEec
Q 018808 274 ELS--TLPTLVIIGPDGKTLHS 293 (350)
Q Consensus 274 ~v~--~~P~~~lid~~G~i~~~ 293 (350)
|+. .+|++++++.++. .+.
T Consensus 76 gl~~~~~P~v~i~~~~~~-KY~ 96 (130)
T cd02983 76 NIGGFGYPAMVAINFRKM-KFA 96 (130)
T ss_pred CCCccCCCEEEEEecccC-ccc
Confidence 985 4999999998765 444
No 408
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=90.27 E-value=6.8 Score=30.01 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=63.7
Q ss_pred ecCCCCCc--EEEEEecC-CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHH
Q 018808 32 KLDSLKGK--IGLYFSAS-WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDK 108 (350)
Q Consensus 32 ~l~~~~gk--~~v~F~~~-~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (350)
.|++++++ ++|.|--+ .-+.-......|.+-...+.++ ++.++.+.-+..... ....+......
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR-di~v~~i~~~~~~~~------------~~~~~~~~~~~ 68 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER-DIVVIVITGDGARSP------------GKPLSPEDIQA 68 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC-ceEEEEEeCCccccc------------cCcCCHHHHHH
Confidence 36677887 66666533 3344556666677766677777 477777743332210 01222344457
Q ss_pred HHhhcCCCC-cceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHH
Q 018808 109 LDELFKVMG-IPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 160 (350)
Q Consensus 109 l~~~~~v~~-~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~ 160 (350)
+.+.|++.. .-+++|++++|.+-.+. ..|++.+.+-..++.
T Consensus 69 lr~~l~~~~~~f~~vLiGKDG~vK~r~-----------~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 69 LRKRLRIPPGGFTVVLIGKDGGVKLRW-----------PEPIDPEELFDTIDA 110 (118)
T ss_pred HHHHhCCCCCceEEEEEeCCCcEEEec-----------CCCCCHHHHHHHHhC
Confidence 888888653 45889999999876541 235666666665553
No 409
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=90.17 E-value=0.37 Score=41.11 Aligned_cols=41 Identities=20% Similarity=0.364 Sum_probs=31.4
Q ss_pred CCCc-EEEEEecCCChhhhhhhHHH---HHHHHHhccCCCEEEEEEE
Q 018808 36 LKGK-IGLYFSASWCGPCQRFTPIL---AEVYNELSRQGDFEVIFVS 78 (350)
Q Consensus 36 ~~gk-~~v~F~~~~C~~C~~~~~~l---~~l~~~~~~~~~~~~v~i~ 78 (350)
..|+ .++.|+...||+|..+.+.+ ..+.+.++++ +.++.+.
T Consensus 35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~--v~~~~~~ 79 (207)
T PRK10954 35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG--TKMTKYH 79 (207)
T ss_pred CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC--CeEEEec
Confidence 3578 89999999999999998866 7778887654 4555443
No 410
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=90.11 E-value=0.74 Score=38.12 Aligned_cols=66 Identities=15% Similarity=0.171 Sum_probs=55.9
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
|++.||-+.-.-|+-+...|..|++++-+ .+|+-|+....+ -++..++|...|
T Consensus 87 VVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~P------------------------Flv~kL~IkVLP 139 (211)
T KOG1672|consen 87 VVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAP------------------------FLVTKLNIKVLP 139 (211)
T ss_pred EEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCc------------------------eeeeeeeeeEee
Confidence 99999999888999999999999998764 679999876654 477789999999
Q ss_pred eEEEECCCCeEEec
Q 018808 120 HLVILDENGKVLSD 133 (350)
Q Consensus 120 ~~~lid~~G~v~~~ 133 (350)
++.++ .+|..+.+
T Consensus 140 ~v~l~-k~g~~~D~ 152 (211)
T KOG1672|consen 140 TVALF-KNGKTVDY 152 (211)
T ss_pred eEEEE-EcCEEEEE
Confidence 99999 88876654
No 411
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=90.11 E-value=3.8 Score=31.45 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=53.5
Q ss_pred ccccCCCE-EEEEEe-ccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHH
Q 018808 192 VSDLEGKT-IGLYFS-MSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 269 (350)
Q Consensus 192 l~~~~gk~-vlv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (350)
|++++++. +||.|- ...-+.-...+..|.+....+.++. +.++.+.-+.... ..-+........+
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRd--i~v~~i~~~~~~~-----------~~~~~~~~~~~~l 69 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERD--IVVIVITGDGARS-----------PGKPLSPEDIQAL 69 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCc--eEEEEEeCCcccc-----------ccCcCCHHHHHHH
Confidence 45565543 333333 2233344556666666666777776 7777764332111 0112223345678
Q ss_pred HHHcCCCC-ccEEEEECCCCCEEeccch
Q 018808 270 ARYFELST-LPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 270 ~~~~~v~~-~P~~~lid~~G~i~~~~~~ 296 (350)
.+.|++.. --+.+||++||.+..++..
T Consensus 70 r~~l~~~~~~f~~vLiGKDG~vK~r~~~ 97 (118)
T PF13778_consen 70 RKRLRIPPGGFTVVLIGKDGGVKLRWPE 97 (118)
T ss_pred HHHhCCCCCceEEEEEeCCCcEEEecCC
Confidence 88998753 4588999999999888554
No 412
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=89.31 E-value=1.1 Score=35.67 Aligned_cols=105 Identities=23% Similarity=0.302 Sum_probs=64.7
Q ss_pred eeecccc-CCCEEEEE-EeccCCcc-ChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCC-CccccCCch
Q 018808 189 KISVSDL-EGKTIGLY-FSMSSYKA-SAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMP-WLALPFKDK 264 (350)
Q Consensus 189 ~v~l~~~-~gk~vlv~-f~~~~C~~-C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~-~~~~~~~~~ 264 (350)
++.++++ +||-++|+ .-+...|. |+..+|-+.+-.++++.+|- =+|+.|++| ++-.+..+.+.++ .-.+.+..|
T Consensus 34 tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGV-d~iicvSVn-DpFv~~aW~k~~g~~~~V~f~aD 111 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGV-DEIICVSVN-DPFVMKAWAKSLGANDHVKFVAD 111 (171)
T ss_pred eEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCC-cEEEEEecC-cHHHHHHHHhhcCccceEEEEec
Confidence 6777764 78655553 33446666 67889999999999999882 256677777 4544455544332 123444556
Q ss_pred hHHHHHHHcCC-----------CCccEEEEECCCCCEEeccch
Q 018808 265 SREKLARYFEL-----------STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 265 ~~~~~~~~~~v-----------~~~P~~~lid~~G~i~~~~~~ 296 (350)
...++.+.+|+ +.--.-+++ .||++......
T Consensus 112 ~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~nvE 153 (171)
T KOG0541|consen 112 PAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVNVE 153 (171)
T ss_pred CCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEEec
Confidence 66666666553 222233455 88888876654
No 413
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=88.72 E-value=0.93 Score=34.03 Aligned_cols=70 Identities=23% Similarity=0.329 Sum_probs=44.5
Q ss_pred EEEEEEeccCC---ccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 199 TIGLYFSMSSY---KASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 199 ~vlv~f~~~~C---~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
..++ |++..| +-|....-.|-++.+.+... +....|.. ....++..+||+
T Consensus 28 ~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~---~~~avv~~-----------------------~~e~~L~~r~gv 80 (107)
T PF07449_consen 28 DAVL-FFAGDPARFPETADVAVILPELVKAFPGR---FRGAVVAR-----------------------AAERALAARFGV 80 (107)
T ss_dssp CEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTS---EEEEEEEH-----------------------HHHHHHHHHHT-
T ss_pred cEEE-EECCCCCcCcccccceeEcHHHHHhhhCc---cceEEECc-----------------------hhHHHHHHHhCC
Confidence 3444 444444 45555444666677777665 55444431 123679999999
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
..+|+++++ ++|+.+....|
T Consensus 81 ~~~PaLvf~-R~g~~lG~i~g 100 (107)
T PF07449_consen 81 RRWPALVFF-RDGRYLGAIEG 100 (107)
T ss_dssp TSSSEEEEE-ETTEEEEEEES
T ss_pred ccCCeEEEE-ECCEEEEEecC
Confidence 999999999 99988866544
No 414
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=88.54 E-value=3 Score=31.98 Aligned_cols=61 Identities=18% Similarity=0.529 Sum_probs=46.1
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEE-ECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFV-SGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
..| +++-|-..|-|.|..+-..|..+.+++.+ +..+.+ .+++.+ .+-+.|+
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn---fa~IylvdideV~------------------------~~~~~~~ 74 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN---FAVIYLVDIDEVP------------------------DFVKMYE 74 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhh---ceEEEEEecchhh------------------------hhhhhhc
Confidence 446 88889999999999999999999999874 444443 455443 5777789
Q ss_pred CCCcceEEEE
Q 018808 115 VMGIPHLVIL 124 (350)
Q Consensus 115 v~~~P~~~li 124 (350)
+...|++.++
T Consensus 75 l~~p~tvmfF 84 (142)
T KOG3414|consen 75 LYDPPTVMFF 84 (142)
T ss_pred ccCCceEEEE
Confidence 8888866654
No 415
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.42 E-value=1.3 Score=30.51 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=44.6
Q ss_pred EEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEE
Q 018808 202 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTL 281 (350)
Q Consensus 202 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~ 281 (350)
..|++..||-|......|.++.-. ++. |.+-.+-..+++|+.-.. .. ..=+-.+..|-.++|.+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~-------yd~--VeIt~Sm~NlKrFl~lRD------s~-~~Fd~vk~~gyiGIPal 68 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVD-------YDF--VEITESMANLKRFLHLRD------SR-PEFDEVKSNGYIGIPAL 68 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCC-------cee--eehhhhhhhHHHHHhhhc------cc-hhHHhhhhcCcccceEE
Confidence 458899999998887777655211 333 334456677788776211 00 01123567788899987
Q ss_pred EEECCCCCEEe
Q 018808 282 VIIGPDGKTLH 292 (350)
Q Consensus 282 ~lid~~G~i~~ 292 (350)
++ .||+++-
T Consensus 69 l~--~d~~vVl 77 (85)
T COG4545 69 LT--DDGKVVL 77 (85)
T ss_pred Ee--CCCcEEE
Confidence 65 5666663
No 416
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=86.78 E-value=1.3 Score=42.13 Aligned_cols=21 Identities=0% Similarity=-0.151 Sum_probs=16.3
Q ss_pred EEEEeccCCccChhhHHHHHH
Q 018808 201 GLYFSMSSYKASAEFTPRLVE 221 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~ 221 (350)
++.|..+|||+|.+.-..|.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~ 24 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA 24 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 567899999999877666544
No 417
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=84.09 E-value=1.2 Score=37.98 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=30.7
Q ss_pred CCCEEEEEEeccCCccChhhHHHH---HHHHHHHhcCCCcEEEEEEeC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRL---VEVYEKLKGKGESFEIVLISL 240 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~~vv~v~~ 240 (350)
.|++.|+.|+.-.||+|..+.+.+ ..+.+.+.+. +.++.+.+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~---v~~~~~~~ 80 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG---TKMTKYHV 80 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC---CeEEEecc
Confidence 467888999999999999998865 6677776544 44544433
No 418
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.01 E-value=5.5 Score=35.69 Aligned_cols=73 Identities=12% Similarity=0.250 Sum_probs=52.2
Q ss_pred CCCEEEEEEecc----CCccChhhHHHHHHHHHHHhcCCCc-----EEEEEEeCCCCHHHHHHhhcCCCCccccCCchhH
Q 018808 196 EGKTIGLYFSMS----SYKASAEFTPRLVEVYEKLKGKGES-----FEIVLISLDDEEESFKRDLGSMPWLALPFKDKSR 266 (350)
Q Consensus 196 ~gk~vlv~f~~~----~C~~C~~~~~~l~~~~~~~~~~~~~-----~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (350)
++-.+++.|-|. .|.-|+.+..+++-+++.+...+.. +=+..|..|+ .
T Consensus 59 rNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e-----------------------~ 115 (331)
T KOG2603|consen 59 RNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE-----------------------S 115 (331)
T ss_pred CCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc-----------------------c
Confidence 444677777755 8999999999999999888766421 2233333332 3
Q ss_pred HHHHHHcCCCCccEEEEECCC-CCEE
Q 018808 267 EKLARYFELSTLPTLVIIGPD-GKTL 291 (350)
Q Consensus 267 ~~~~~~~~v~~~P~~~lid~~-G~i~ 291 (350)
.++.+++++...|+++++.|. |+..
T Consensus 116 p~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 116 PQVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred HHHHHHhcccCCCeEEEeCCCccccc
Confidence 568999999999999999765 4444
No 419
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=83.80 E-value=3.3 Score=29.24 Aligned_cols=57 Identities=33% Similarity=0.381 Sum_probs=40.4
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
+++.|..+.|+-|......|.++.... .+.+-.|+++++. .+.++|+. .+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~------------------------~l~~~Y~~-~IP 51 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDP------------------------ELFEKYGY-RIP 51 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTH------------------------HHHHHSCT-STS
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCH------------------------HHHHHhcC-CCC
Confidence 367788899999998877776543332 4788888888665 57778884 789
Q ss_pred eEEEEC
Q 018808 120 HLVILD 125 (350)
Q Consensus 120 ~~~lid 125 (350)
.+.+-+
T Consensus 52 Vl~~~~ 57 (81)
T PF05768_consen 52 VLHIDG 57 (81)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 877754
No 420
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=83.35 E-value=6.4 Score=26.68 Aligned_cols=59 Identities=17% Similarity=0.236 Sum_probs=34.2
Q ss_pred EEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEE
Q 018808 203 YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLV 282 (350)
Q Consensus 203 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~ 282 (350)
.|+..|||+|.+..-.|.+. |-.++++.|+.... ..++.+......+|++.
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-------gl~~e~~~v~~~~~----------------------~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-------GITVELREVELKNK----------------------PAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-------CCCcEEEEeCCCCC----------------------CHHHHHHCCCCCCCEEE
Confidence 46788999998765544322 22267766654321 12345555667788873
Q ss_pred EECCCCCEEe
Q 018808 283 IIGPDGKTLH 292 (350)
Q Consensus 283 lid~~G~i~~ 292 (350)
+.+|..+.
T Consensus 54 --~~~g~~l~ 61 (71)
T cd03060 54 --LGNGTVIE 61 (71)
T ss_pred --ECCCcEEe
Confidence 34576654
No 421
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=83.34 E-value=2.4 Score=30.00 Aligned_cols=56 Identities=21% Similarity=0.330 Sum_probs=39.9
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccE
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPT 280 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~ 280 (350)
|+.|..+.|+-|......|.++.... + +.+-.|+++++ .++.++|+. .+|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~---~--~~l~~vDI~~d-----------------------~~l~~~Y~~-~IPV 52 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF---P--FELEEVDIDED-----------------------PELFEKYGY-RIPV 52 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS---T--CEEEEEETTTT-----------------------HHHHHHSCT-STSE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc---C--ceEEEEECCCC-----------------------HHHHHHhcC-CCCE
Confidence 56788999999988877776653332 2 77888887754 447889996 7998
Q ss_pred EEEEC
Q 018808 281 LVIIG 285 (350)
Q Consensus 281 ~~lid 285 (350)
+.+-+
T Consensus 53 l~~~~ 57 (81)
T PF05768_consen 53 LHIDG 57 (81)
T ss_dssp EEETT
T ss_pred EEEcC
Confidence 66654
No 422
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=83.25 E-value=14 Score=28.82 Aligned_cols=72 Identities=15% Similarity=0.270 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC--CcceEEEECCCCeEE
Q 018808 54 RFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM--GIPHLVILDENGKVL 131 (350)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~~lid~~G~v~ 131 (350)
.....|.+++++|+.+. +.+++++.+... .+.+.||+. .+|.+++++.++. .
T Consensus 41 ~~~~~l~~vAk~~kgk~-i~Fv~vd~~~~~------------------------~~~~~fgl~~~~~P~v~i~~~~~~-K 94 (130)
T cd02983 41 KYLEILKSVAEKFKKKP-WGWLWTEAGAQL------------------------DLEEALNIGGFGYPAMVAINFRKM-K 94 (130)
T ss_pred HHHHHHHHHHHHhcCCc-EEEEEEeCcccH------------------------HHHHHcCCCccCCCEEEEEecccC-c
Confidence 45677889999997653 788888776553 477789985 4899999987653 2
Q ss_pred ecCCccceecccCcCCCCChHHHHHHHHHH
Q 018808 132 SDGGVEIIREYGVEGYPFTVERIKEMKEQE 161 (350)
Q Consensus 132 ~~~~~~~~~~~~~~~~p~~~~~i~~l~~~~ 161 (350)
|. ....+.+.+.+.++....
T Consensus 95 Y~----------~~~~~~t~e~i~~Fv~~~ 114 (130)
T cd02983 95 FA----------TLKGSFSEDGINEFLREL 114 (130)
T ss_pred cc----------cccCccCHHHHHHHHHHH
Confidence 21 011235677777777653
No 423
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=82.85 E-value=2.8 Score=39.76 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=24.4
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCH
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~ 83 (350)
++.|..+|||+|.+....|.+ ++ +.+-.++++.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~g-i~~~~idi~~~~ 38 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------ND-IPFTQISLDDDV 38 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CC-CCeEEEECCCCh
Confidence 667889999999987766654 22 556666666544
No 424
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=81.20 E-value=19 Score=29.39 Aligned_cols=63 Identities=21% Similarity=0.394 Sum_probs=43.3
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC--C
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM--G 117 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~ 117 (350)
+++.|..............|..+.++++. ++.++.+.++... .+.+.|++. .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~~~~------------------------~~~~~~~i~~~~ 151 (184)
T PF13848_consen 98 VLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDADDFP------------------------RLLKYFGIDEDD 151 (184)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETTTTH------------------------HHHHHTTTTTSS
T ss_pred EEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehHHhH------------------------HHHHHcCCCCcc
Confidence 44555544556666777777777777754 4777777766332 577788887 8
Q ss_pred cceEEEECCCC
Q 018808 118 IPHLVILDENG 128 (350)
Q Consensus 118 ~P~~~lid~~G 128 (350)
.|.+++++.+.
T Consensus 152 ~P~~vi~~~~~ 162 (184)
T PF13848_consen 152 LPALVIFDSNK 162 (184)
T ss_dssp SSEEEEEETTT
T ss_pred CCEEEEEECCC
Confidence 99999999444
No 425
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=80.24 E-value=14 Score=28.82 Aligned_cols=45 Identities=18% Similarity=0.347 Sum_probs=33.8
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCH
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~ 83 (350)
..| +++-|-..|-|.|.++--.|..+.++++.- ..+..+..+..+
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~--a~IY~vDi~~Vp 64 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF--AVIYLVDIDEVP 64 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--EEEEEEETTTTH
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc--eEEEEEEcccch
Confidence 456 888999999999999999999999998752 344445666544
No 426
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=79.89 E-value=22 Score=31.98 Aligned_cols=95 Identities=21% Similarity=0.295 Sum_probs=59.5
Q ss_pred hhhcCccCCceeccCCceeec---CCCCCc-EEEEEecC----CChhhhhhhHHHHHHHHHhccCC------CEEEEEEE
Q 018808 13 SLLSSSARDFLIRSNGDQVKL---DSLKGK-IGLYFSAS----WCGPCQRFTPILAEVYNELSRQG------DFEVIFVS 78 (350)
Q Consensus 13 ~~~g~~~p~f~~~~~g~~~~l---~~~~gk-~~v~F~~~----~C~~C~~~~~~l~~l~~~~~~~~------~~~~v~i~ 78 (350)
...+.+.+.-.+..++..++. ...+.= +++.|.|. .|..|.+....+.-+.+.+.... ++-+.-|+
T Consensus 32 ~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd 111 (331)
T KOG2603|consen 32 QLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVD 111 (331)
T ss_pred HHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEe
Confidence 333444444445444444332 222333 77778775 49999998888888888775442 23444455
Q ss_pred CCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCC-CeEE
Q 018808 79 GDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDEN-GKVL 131 (350)
Q Consensus 79 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~-G~v~ 131 (350)
.|+.+ .+-+.+++.+.|+++++.|. |+..
T Consensus 112 ~~e~p------------------------~~Fq~l~ln~~P~l~~f~P~~~n~~ 141 (331)
T KOG2603|consen 112 YDESP------------------------QVFQQLNLNNVPHLVLFSPAKGNKK 141 (331)
T ss_pred ccccH------------------------HHHHHhcccCCCeEEEeCCCccccc
Confidence 55443 57778999999999999754 4443
No 427
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.90 E-value=4.4 Score=33.50 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=45.9
Q ss_pred ecCCCceeeccccCC--CEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeC
Q 018808 183 ISSDGRKISVSDLEG--KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 240 (350)
Q Consensus 183 ~~~~g~~v~l~~~~g--k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~ 240 (350)
.+..|+.+...++.. +.|+....-+.|-.|+.+...|.++..-+.+.| +.+++|-.
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~G--v~Li~vg~ 92 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELG--VVLIAVGP 92 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhC--CEEEEEec
Confidence 467889999988743 578888889999999999999999966666667 88888764
No 428
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=76.92 E-value=12 Score=29.97 Aligned_cols=28 Identities=14% Similarity=0.092 Sum_probs=18.3
Q ss_pred CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCH
Q 018808 48 WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDD 83 (350)
Q Consensus 48 ~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~ 83 (350)
+||+|......|..+ .+.+-.++++.+.
T Consensus 15 t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~ 42 (147)
T cd03031 15 TFEDCNNVRAILESF--------RVKFDERDVSMDS 42 (147)
T ss_pred cChhHHHHHHHHHHC--------CCcEEEEECCCCH
Confidence 899998877666532 3556666665554
No 429
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=76.35 E-value=6.5 Score=29.54 Aligned_cols=66 Identities=23% Similarity=0.359 Sum_probs=42.8
Q ss_pred EEEEEecC--CChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCC
Q 018808 40 IGLYFSAS--WCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG 117 (350)
Q Consensus 40 ~~v~F~~~--~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~ 117 (350)
.+++|... .|+-|.+..-.|-+|.+.|... +....+. .. ....+...||+..
T Consensus 29 ~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~--~~~avv~--~~----------------------~e~~L~~r~gv~~ 82 (107)
T PF07449_consen 29 AVLFFAGDPARFPETADVAVILPELVKAFPGR--FRGAVVA--RA----------------------AERALAARFGVRR 82 (107)
T ss_dssp EEEEESS-TTTSTTCCHHHHHHHHHHCTSTTS--EEEEEEE--HH----------------------HHHHHHHHHT-TS
T ss_pred EEEEECCCCCcCcccccceeEcHHHHHhhhCc--cceEEEC--ch----------------------hHHHHHHHhCCcc
Confidence 45555443 2455666666677777877653 5544443 11 2248999999999
Q ss_pred cceEEEECCCCeEEe
Q 018808 118 IPHLVILDENGKVLS 132 (350)
Q Consensus 118 ~P~~~lid~~G~v~~ 132 (350)
.|+++++ ++|+.+.
T Consensus 83 ~PaLvf~-R~g~~lG 96 (107)
T PF07449_consen 83 WPALVFF-RDGRYLG 96 (107)
T ss_dssp SSEEEEE-ETTEEEE
T ss_pred CCeEEEE-ECCEEEE
Confidence 9999999 8888776
No 430
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=75.77 E-value=3.7 Score=35.87 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=29.1
Q ss_pred cCCCEEEEEEeccCCccChhhHHHHHHHHHHHhc
Q 018808 195 LEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKG 228 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~ 228 (350)
..||+.+++..+-|||.|..+.-.|-....+|..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 3589999999999999999999888777777754
No 431
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=75.71 E-value=11 Score=28.56 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHh-cCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCC----ccEEEEECCC
Q 018808 213 AEFTPRLVEVYEKLK-GKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST----LPTLVIIGPD 287 (350)
Q Consensus 213 ~~~~~~l~~~~~~~~-~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~P~~~lid~~ 287 (350)
......+.+++++++ ++ +.++.++.++. ....+.||+.. .|.+.+++.+
T Consensus 34 ~~~~~~~~~vAk~fk~gk---i~Fv~~D~~~~-----------------------~~~l~~fgl~~~~~~~P~~~i~~~~ 87 (111)
T cd03073 34 NYWRNRVLKVAKDFPDRK---LNFAVADKEDF-----------------------SHELEEFGLDFSGGEKPVVAIRTAK 87 (111)
T ss_pred HHHHHHHHHHHHHCcCCe---EEEEEEcHHHH-----------------------HHHHHHcCCCcccCCCCEEEEEeCC
Confidence 345678888888988 45 66666654421 23678899874 9999999876
Q ss_pred C
Q 018808 288 G 288 (350)
Q Consensus 288 G 288 (350)
+
T Consensus 88 ~ 88 (111)
T cd03073 88 G 88 (111)
T ss_pred C
Confidence 5
No 432
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=75.19 E-value=8.5 Score=38.41 Aligned_cols=80 Identities=20% Similarity=0.227 Sum_probs=49.0
Q ss_pred CCCCCc-EEEEEecCCChhhhhhhHH-H--HHHHHHhccCCCEEEEEEECCCCHH-HHHhHHhcCCCcccccCChhhHHH
Q 018808 34 DSLKGK-IGLYFSASWCGPCQRFTPI-L--AEVYNELSRQGDFEVIFVSGDEDDE-AFKGYFSKMPWLAVPFSDSETRDK 108 (350)
Q Consensus 34 ~~~~gk-~~v~F~~~~C~~C~~~~~~-l--~~l~~~~~~~~~~~~v~i~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 108 (350)
+.-++| ++|-.-.+||..|..|... + .++++-+++. ||.|.+|.++. ++++. .-.
T Consensus 39 A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~----FV~IKVDREERPDvD~~----------------Ym~ 98 (667)
T COG1331 39 AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN----FVPVKVDREERPDVDSL----------------YMN 98 (667)
T ss_pred HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC----ceeeeEChhhccCHHHH----------------HHH
Confidence 345778 9999999999999866432 1 2333333322 78888875532 11110 012
Q ss_pred HHh-hcCCCCcceEEEECCCCeEEec
Q 018808 109 LDE-LFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 109 l~~-~~~v~~~P~~~lid~~G~v~~~ 133 (350)
++. .-|--+.|..+++-|+|+.++.
T Consensus 99 ~~q~~tG~GGWPLtVfLTPd~kPFfa 124 (667)
T COG1331 99 ASQAITGQGGWPLTVFLTPDGKPFFA 124 (667)
T ss_pred HHHHhccCCCCceeEEECCCCceeee
Confidence 222 2344589999999999999875
No 433
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=74.81 E-value=5.9 Score=29.45 Aligned_cols=44 Identities=18% Similarity=0.214 Sum_probs=25.5
Q ss_pred EEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-CCHHHHHHhhc
Q 018808 202 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-DEEESFKRDLG 252 (350)
Q Consensus 202 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-~~~~~~~~~~~ 252 (350)
..|..++|+.|++....|++ .|-.++++-|.-+ .+.+++.+...
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~~l~~~~~ 46 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLKEPPTKEELKELLA 46 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCCCHHHHHHHHH
Confidence 46788999999988766644 3322555544332 24445444443
No 434
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=74.28 E-value=16 Score=24.69 Aligned_cols=32 Identities=19% Similarity=0.010 Sum_probs=19.6
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECC
Q 018808 43 YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGD 80 (350)
Q Consensus 43 ~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d 80 (350)
-|+..+||+|++..-.|.+.-- .++.+.++..
T Consensus 3 ly~~~~~p~~~rv~~~L~~~gl------~~e~~~v~~~ 34 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLAGI------TVELREVELK 34 (71)
T ss_pred EEecCCCcHHHHHHHHHHHcCC------CcEEEEeCCC
Confidence 3567899999887655543211 3566666543
No 435
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=73.15 E-value=11 Score=32.67 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=37.0
Q ss_pred ccCCceeecCCCCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEEC
Q 018808 25 RSNGDQVKLDSLKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 79 (350)
Q Consensus 25 ~~~g~~~~l~~~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~ 79 (350)
..++...-..+..++ +++.|....||+|....+.+.+.+....+. ++.+.-+.+
T Consensus 71 ~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~-~~~~~~~~f 125 (244)
T COG1651 71 TPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKV-RLVLREFPF 125 (244)
T ss_pred cCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCC-ceEEEEeec
Confidence 345555556666668 999999999999988888887766555443 344444444
No 436
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=71.91 E-value=6.8 Score=32.78 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=55.3
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
+|-+|+|..|...-|-|.-....|++++-+|++ +++|.|...+ ....|-=
T Consensus 110 ~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~----iKFVki~at~--------------------------cIpNYPe 159 (240)
T KOG3170|consen 110 EGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ----IKFVKIPATT--------------------------CIPNYPE 159 (240)
T ss_pred CccEEEEEeeccccHHHHHHHHHHHHHhhcCCc----ceEEeccccc--------------------------ccCCCcc
Confidence 366999999999999999999999999999976 7787775432 2234555
Q ss_pred CCccEEEEECCCCCEEeccch
Q 018808 276 STLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 276 ~~~P~~~lid~~G~i~~~~~~ 296 (350)
..+||++|. -.|-+...++|
T Consensus 160 ~nlPTl~VY-~~G~lk~q~ig 179 (240)
T KOG3170|consen 160 SNLPTLLVY-HHGALKKQMIG 179 (240)
T ss_pred cCCCeEEEe-ecchHHhheeh
Confidence 678999999 77888877766
No 437
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=69.95 E-value=39 Score=31.01 Aligned_cols=72 Identities=18% Similarity=0.302 Sum_probs=43.6
Q ss_pred EEEEEecCCChh--hhh---hhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcC
Q 018808 40 IGLYFSASWCGP--CQR---FTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFK 114 (350)
Q Consensus 40 ~~v~F~~~~C~~--C~~---~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 114 (350)
++|+|+.+--.. .++ +.-.+-+|.++.-++..+.+..|+...+. ++++++|
T Consensus 54 l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~------------------------klAKKLg 109 (383)
T PF01216_consen 54 LVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDA------------------------KLAKKLG 109 (383)
T ss_dssp EEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTH------------------------HHHHHHT
T ss_pred EEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHH------------------------HHHHhcC
Confidence 777777764321 111 12223345555544335888888876664 7999999
Q ss_pred CCCcceEEEECCCCeEEecCCc
Q 018808 115 VMGIPHLVILDENGKVLSDGGV 136 (350)
Q Consensus 115 v~~~P~~~lid~~G~v~~~~~~ 136 (350)
+...++++++ ++|+++..+|.
T Consensus 110 v~E~~SiyVf-kd~~~IEydG~ 130 (383)
T PF01216_consen 110 VEEEGSIYVF-KDGEVIEYDGE 130 (383)
T ss_dssp --STTEEEEE-ETTEEEEE-S-
T ss_pred ccccCcEEEE-ECCcEEEecCc
Confidence 9999999999 88888876553
No 438
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=69.02 E-value=13 Score=32.20 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=34.9
Q ss_pred ecCCCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcC
Q 018808 183 ISSDGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGK 229 (350)
Q Consensus 183 ~~~~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~ 229 (350)
...++..+...+..+++.++.|....||+|....+.|.+.+-.....
T Consensus 70 ~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~ 116 (244)
T COG1651 70 LTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKV 116 (244)
T ss_pred ecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCC
Confidence 34455555555556689999999999999999999888866655543
No 439
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=67.78 E-value=9.8 Score=28.43 Aligned_cols=44 Identities=11% Similarity=0.142 Sum_probs=26.1
Q ss_pred EEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-CCHHHHHHhhc
Q 018808 202 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-DEEESFKRDLG 252 (350)
Q Consensus 202 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-~~~~~~~~~~~ 252 (350)
..|+.++|+.|++....|.+. |-.++++-+.-+ -+.+++++++.
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-------~i~~~~~di~~~p~s~~eL~~~l~ 46 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-------GVAYTFHDYRKDGLDAATLERWLA 46 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-------CCCeEEEecccCCCCHHHHHHHHH
Confidence 468889999999887666433 312555444333 25555555544
No 440
>PHA03075 glutaredoxin-like protein; Provisional
Probab=67.56 E-value=5.4 Score=30.13 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=23.7
Q ss_pred CEEEEEEeccCCccChhhHHHHHHHHHHHh
Q 018808 198 KTIGLYFSMSSYKASAEFTPRLVEVYEKLK 227 (350)
Q Consensus 198 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~ 227 (350)
|.++|-|.-+.|+.|......|.++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568899999999999988887766655443
No 441
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=67.35 E-value=24 Score=28.26 Aligned_cols=14 Identities=7% Similarity=0.199 Sum_probs=10.4
Q ss_pred CCccChhhHHHHHH
Q 018808 208 SYKASAEFTPRLVE 221 (350)
Q Consensus 208 ~C~~C~~~~~~l~~ 221 (350)
+||+|......|++
T Consensus 15 t~~~C~~ak~iL~~ 28 (147)
T cd03031 15 TFEDCNNVRAILES 28 (147)
T ss_pred cChhHHHHHHHHHH
Confidence 89999877666543
No 442
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=66.96 E-value=21 Score=32.74 Aligned_cols=71 Identities=15% Similarity=0.242 Sum_probs=44.1
Q ss_pred CCEEEEEEeccCCccChhhH------H-HHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHH
Q 018808 197 GKTIGLYFSMSSYKASAEFT------P-RLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKL 269 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~------~-~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (350)
-+.++|+|+.+-- .-+... . .|+-.++-+..+| +.+-.|++..+ ..+
T Consensus 51 yd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~g--igfg~VD~~Kd-----------------------~kl 104 (383)
T PF01216_consen 51 YDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKG--IGFGMVDSKKD-----------------------AKL 104 (383)
T ss_dssp -SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCT--EEEEEEETTTT-----------------------HHH
T ss_pred hcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccC--cceEEeccHHH-----------------------HHH
Confidence 3578888887742 222221 1 2333344455556 88888887654 669
Q ss_pred HHHcCCCCccEEEEECCCCCEEecc
Q 018808 270 ARYFELSTLPTLVIIGPDGKTLHSN 294 (350)
Q Consensus 270 ~~~~~v~~~P~~~lid~~G~i~~~~ 294 (350)
++++|+...++++++ ++|+++.-.
T Consensus 105 AKKLgv~E~~SiyVf-kd~~~IEyd 128 (383)
T PF01216_consen 105 AKKLGVEEEGSIYVF-KDGEVIEYD 128 (383)
T ss_dssp HHHHT--STTEEEEE-ETTEEEEE-
T ss_pred HHhcCccccCcEEEE-ECCcEEEec
Confidence 999999999999999 888888554
No 443
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=66.89 E-value=16 Score=31.03 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=57.6
Q ss_pred cCCceeecCC---CCCc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccC
Q 018808 26 SNGDQVKLDS---LKGK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFS 101 (350)
Q Consensus 26 ~~g~~~~l~~---~~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~ 101 (350)
.+|+.+.-.- ++-- ++|..|-+.-+-|..++.-+.=|+..|+. ++|+-|.....
T Consensus 144 ~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~---vKFckikss~~------------------- 201 (273)
T KOG3171|consen 144 ETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI---VKFCKIKSSNT------------------- 201 (273)
T ss_pred ccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc---eeEEEeeeccc-------------------
Confidence 4666554322 2223 78889999999999999999999999974 78888865333
Q ss_pred ChhhHHHHHhhcCCCCcceEEEECCCCeEEe
Q 018808 102 DSETRDKLDELFKVMGIPHLVILDENGKVLS 132 (350)
Q Consensus 102 ~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~ 132 (350)
...+.|.....|++.++ +.|+++.
T Consensus 202 ------gas~~F~~n~lP~LliY-kgGeLIg 225 (273)
T KOG3171|consen 202 ------GASDRFSLNVLPTLLIY-KGGELIG 225 (273)
T ss_pred ------cchhhhcccCCceEEEe-eCCchhH
Confidence 24455778899999999 7888765
No 444
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=65.75 E-value=16 Score=27.44 Aligned_cols=30 Identities=17% Similarity=0.093 Sum_probs=21.0
Q ss_pred EeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEE
Q 018808 204 FSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLI 238 (350)
Q Consensus 204 f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v 238 (350)
||-.+||.|......+... +....++++.+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~-----d~~~~l~~~~~ 31 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR-----DRGGRLRFVDI 31 (114)
T ss_pred EECCCCHhHHHHHHHHHhc-----CCCCCEEEEEC
Confidence 6778999999998877665 22223777665
No 445
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.16 E-value=7.4 Score=32.22 Aligned_cols=54 Identities=24% Similarity=0.341 Sum_probs=41.3
Q ss_pred eccCCceeecCCCCCc---EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEE
Q 018808 24 IRSNGDQVKLDSLKGK---IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78 (350)
Q Consensus 24 ~~~~g~~~~l~~~~gk---~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~ 78 (350)
++..|+.+...++..+ ++...-.+.|-.|+.....|..+..-+...| +..+.|-
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~G-v~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELG-VVLIAVG 91 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhC-CEEEEEe
Confidence 6678999999998554 5555566899999999999999966665555 6666664
No 446
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=63.80 E-value=34 Score=26.91 Aligned_cols=71 Identities=11% Similarity=0.062 Sum_probs=45.6
Q ss_pred CCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC
Q 018808 197 GKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS 276 (350)
Q Consensus 197 gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 276 (350)
.++-++.+|..-|+.|......|.+. +++..+.+..+..+.. ..+.+..++.
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~-----D~~~~i~f~~~q~e~g-----------------------~~~l~~~~l~ 57 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRR-----DQGGRIRFAALQSEPG-----------------------QALLEAAGLD 57 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHh-----ccCCcEEEEeccCchh-----------------------hhHHhhcCCC
Confidence 35566778888999999877666443 2222366666654322 4456666665
Q ss_pred Cc-cEEEEECCCCCEEeccc
Q 018808 277 TL-PTLVIIGPDGKTLHSNV 295 (350)
Q Consensus 277 ~~-P~~~lid~~G~i~~~~~ 295 (350)
.. +.+++++.+|++.....
T Consensus 58 ~~~~~s~~~~~~g~~~~~sd 77 (137)
T COG3011 58 PEDVDSVLLVEAGQLLVGSD 77 (137)
T ss_pred hhhhheeeEecCCceEeccH
Confidence 43 67777878888776543
No 447
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=63.49 E-value=48 Score=26.11 Aligned_cols=63 Identities=19% Similarity=0.330 Sum_probs=40.1
Q ss_pred EEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCC---
Q 018808 200 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELS--- 276 (350)
Q Consensus 200 vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--- 276 (350)
-++++..+.|+=|..-+..| +..| ++|-.+..|+- ..+.++|||.
T Consensus 27 ~~~vyksPnCGCC~~w~~~m-------k~~G--f~Vk~~~~~d~-----------------------~alK~~~gIp~e~ 74 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHM-------KANG--FEVKVVETDDF-----------------------LALKRRLGIPYEM 74 (149)
T ss_pred eEEEEeCCCCccHHHHHHHH-------HhCC--cEEEEeecCcH-----------------------HHHHHhcCCChhh
Confidence 45678899999997655544 4556 88877766631 3466777773
Q ss_pred CccEEEEECCCCCEEeccch
Q 018808 277 TLPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 277 ~~P~~~lid~~G~i~~~~~~ 296 (350)
.--.+.+| +|+.+.-++.
T Consensus 75 ~SCHT~VI--~Gy~vEGHVP 92 (149)
T COG3019 75 QSCHTAVI--NGYYVEGHVP 92 (149)
T ss_pred ccccEEEE--cCEEEeccCC
Confidence 23356677 3666655443
No 448
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=62.05 E-value=13 Score=28.09 Aligned_cols=20 Identities=10% Similarity=0.165 Sum_probs=15.3
Q ss_pred EEEeccCCccChhhHHHHHH
Q 018808 202 LYFSMSSYKASAEFTPRLVE 221 (350)
Q Consensus 202 v~f~~~~C~~C~~~~~~l~~ 221 (350)
..|..++|+.|++....|.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE 21 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 35778899999988766644
No 449
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=62.02 E-value=13 Score=28.36 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=25.5
Q ss_pred EEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC---CHHHHHHhhc
Q 018808 202 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD---EEESFKRDLG 252 (350)
Q Consensus 202 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~---~~~~~~~~~~ 252 (350)
..|+.++|+.|++....|.+ .| +.+..+++.. +.+++.+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~--i~~~~idi~~~~~~~~el~~l~~ 46 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NG--IEYQFIDIGEDGPTREELLDILS 46 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cC--CceEEEecCCChhhHHHHHHHHH
Confidence 35788899999988776654 34 4455555543 3344444443
No 450
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=61.18 E-value=2.9 Score=37.40 Aligned_cols=81 Identities=21% Similarity=0.307 Sum_probs=52.4
Q ss_pred CCceeecCCCCC--c--EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCC
Q 018808 27 NGDQVKLDSLKG--K--IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSD 102 (350)
Q Consensus 27 ~g~~~~l~~~~g--k--~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~ 102 (350)
++-+.-+....| . +-+-||++|||..+...|.+.=.+..|+. ++..++ ++ +..
T Consensus 62 ~~l~~l~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~---i~h~~v-----ee----~~~----------- 118 (319)
T KOG2640|consen 62 DCLQVLLDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS---IQHFAV-----EE----SQA----------- 118 (319)
T ss_pred chhhHHHHhhccccCCcccccchhcccCcccccCcccchhhhhccc---cccccH-----HH----Hhh-----------
Confidence 333444444555 2 88999999999999888888766666541 222221 11 111
Q ss_pred hhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 103 SETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 103 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
...+...|++.+.|...+.+..-..+++
T Consensus 119 ---lpsv~s~~~~~~~ps~~~~n~t~~~~~~ 146 (319)
T KOG2640|consen 119 ---LPSVFSSYGIHSEPSNLMLNQTCPASYR 146 (319)
T ss_pred ---cccchhccccccCCcceeeccccchhhc
Confidence 1156677999999999999766665554
No 451
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=59.91 E-value=5.8 Score=29.98 Aligned_cols=19 Identities=21% Similarity=0.623 Sum_probs=14.6
Q ss_pred EEecCCChhhhhhhHHHHH
Q 018808 43 YFSASWCGPCQRFTPILAE 61 (350)
Q Consensus 43 ~F~~~~C~~C~~~~~~l~~ 61 (350)
.|..++|+.|+.....|.+
T Consensus 3 iY~~~~C~~c~ka~~~L~~ 21 (111)
T cd03036 3 FYEYPKCSTCRKAKKWLDE 21 (111)
T ss_pred EEECCCCHHHHHHHHHHHH
Confidence 4677999999987765543
No 452
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=59.63 E-value=13 Score=29.11 Aligned_cols=46 Identities=17% Similarity=0.042 Sum_probs=26.9
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-CCHHHHHHhhcC
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-DEEESFKRDLGS 253 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-~~~~~~~~~~~~ 253 (350)
+..|..++|+.|++....|.+ .|..++++-|.-+ .+.+++.++++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-------~gi~~~~idi~~~~~~~~eL~~~l~~ 48 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-------HDIPFTERNIFSSPLTIDEIKQILRM 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCcEEeeccCChhhHHHHHHHHHH
Confidence 446788899999987665533 3412444444333 245666666654
No 453
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=59.17 E-value=27 Score=29.33 Aligned_cols=88 Identities=13% Similarity=0.242 Sum_probs=58.6
Q ss_pred Cc-EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 38 GK-IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 38 gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
|- |+|..|...-|.|.-....|+.|..+|+. ++||.|......+ +|--.
T Consensus 111 gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~---iKFVki~at~cIp---------------------------NYPe~ 160 (240)
T KOG3170|consen 111 GVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ---IKFVKIPATTCIP---------------------------NYPES 160 (240)
T ss_pred ccEEEEEeeccccHHHHHHHHHHHHHhhcCCc---ceEEecccccccC---------------------------CCccc
Confidence 44 89999999999999999999999999985 7788886543321 24457
Q ss_pred CcceEEEECCCCeEEecCCccceecccCcCCCCChHHHHHHHHH
Q 018808 117 GIPHLVILDENGKVLSDGGVEIIREYGVEGYPFTVERIKEMKEQ 160 (350)
Q Consensus 117 ~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~p~~~~~i~~l~~~ 160 (350)
..||++++ -.|-+.... +... ..|+.+ .+.+.+..++.+
T Consensus 161 nlPTl~VY-~~G~lk~q~-igll-~lgG~n--~t~ed~e~~L~q 199 (240)
T KOG3170|consen 161 NLPTLLVY-HHGALKKQM-IGLL-ELGGMN--LTMEDVEDFLVQ 199 (240)
T ss_pred CCCeEEEe-ecchHHhhe-ehhh-hhcCCc--CCHHHHHHHHHh
Confidence 78999998 455544321 1111 222221 366666666654
No 454
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=59.09 E-value=18 Score=27.39 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=25.9
Q ss_pred EEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCC---CHHHHHHhhc
Q 018808 202 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDD---EEESFKRDLG 252 (350)
Q Consensus 202 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~---~~~~~~~~~~ 252 (350)
..|+.++|+.|++....|.+ .| +.+-.+++.. +.+++.++++
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~-------~g--i~~~~idi~~~~~~~~el~~~~~ 47 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE-------HQ--IPFEERNLFKQPLTKEELKEILS 47 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEecCCCcchHHHHHHHHH
Confidence 45778899999987666543 34 4444444432 4566666555
No 455
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=58.64 E-value=51 Score=24.82 Aligned_cols=51 Identities=12% Similarity=0.126 Sum_probs=34.0
Q ss_pred hhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCC----cceEEEECCCC
Q 018808 53 QRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMG----IPHLVILDENG 128 (350)
Q Consensus 53 ~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~----~P~~~lid~~G 128 (350)
......+.+++++++. +++.++.++.+.. ....+.||+.. .|.+.+++.++
T Consensus 34 ~~~~~~~~~vAk~fk~-gki~Fv~~D~~~~------------------------~~~l~~fgl~~~~~~~P~~~i~~~~~ 88 (111)
T cd03073 34 NYWRNRVLKVAKDFPD-RKLNFAVADKEDF------------------------SHELEEFGLDFSGGEKPVVAIRTAKG 88 (111)
T ss_pred HHHHHHHHHHHHHCcC-CeEEEEEEcHHHH------------------------HHHHHHcCCCcccCCCCEEEEEeCCC
Confidence 4566777888888862 1366666654322 24667788874 89999998665
No 456
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=58.40 E-value=13 Score=30.59 Aligned_cols=34 Identities=26% Similarity=0.547 Sum_probs=25.6
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEE
Q 018808 43 YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVS 78 (350)
Q Consensus 43 ~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~ 78 (350)
.|..|.|+.|-...|.+.++..+++.+ +.+-.|.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~--i~~~~i~ 35 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK--IEFRFIP 35 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT--EEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc--EEEEEEE
Confidence 588999999999999999999999875 4444444
No 457
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=58.32 E-value=46 Score=23.01 Aligned_cols=63 Identities=22% Similarity=0.284 Sum_probs=45.5
Q ss_pred EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCc
Q 018808 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTL 278 (350)
Q Consensus 199 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 278 (350)
++|.-|.+...+-....+..+.++.+++..- ++++=.|.+.+. .++++.+++.++
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~--~~~LeVIDv~~~-----------------------P~lAe~~~ivAt 56 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLGG--PYELEVIDVLKQ-----------------------PQLAEEDKIVAT 56 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcCC--cEEEEEEEcccC-----------------------HhHHhhCCEEEe
Confidence 4566677777788889999999998888633 365555555433 457889999999
Q ss_pred cEEEEECC
Q 018808 279 PTLVIIGP 286 (350)
Q Consensus 279 P~~~lid~ 286 (350)
||++=..|
T Consensus 57 PtLvk~~P 64 (72)
T cd02978 57 PTLVKVLP 64 (72)
T ss_pred chhhhcCC
Confidence 99765544
No 458
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=57.86 E-value=73 Score=30.04 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=27.2
Q ss_pred HHHHHHcCCCCccEEEEECCCCCEEeccchh
Q 018808 267 EKLARYFELSTLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 267 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~ 297 (350)
..++..|.+..+|..|+|+..|..+.+..|.
T Consensus 67 ~qFs~IYp~v~vPs~ffIg~sGtpLevitg~ 97 (506)
T KOG2507|consen 67 TQFSAIYPYVSVPSIFFIGFSGTPLEVITGF 97 (506)
T ss_pred hhhhhhcccccccceeeecCCCceeEEeecc
Confidence 5678888999999999999999999887764
No 459
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=56.24 E-value=13 Score=27.48 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=15.3
Q ss_pred EEEecCCChhhhhhhHHHHH
Q 018808 42 LYFSASWCGPCQRFTPILAE 61 (350)
Q Consensus 42 v~F~~~~C~~C~~~~~~l~~ 61 (350)
..|..++|+.|+.....|.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~ 21 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE 21 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 45778999999997766553
No 460
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=55.81 E-value=25 Score=26.69 Aligned_cols=32 Identities=25% Similarity=0.529 Sum_probs=21.4
Q ss_pred EEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCC
Q 018808 43 YFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDED 82 (350)
Q Consensus 43 ~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~ 82 (350)
.|+.++|+.|+.....|.+ ++ +.+..++...+
T Consensus 3 iY~~~~C~~c~ka~~~L~~-------~~-i~~~~idi~~~ 34 (117)
T TIGR01617 3 VYGSPNCTTCKKARRWLEA-------NG-IEYQFIDIGED 34 (117)
T ss_pred EEeCCCCHHHHHHHHHHHH-------cC-CceEEEecCCC
Confidence 5678999999997766654 22 55555655443
No 461
>PRK12559 transcriptional regulator Spx; Provisional
Probab=55.46 E-value=31 Score=26.89 Aligned_cols=46 Identities=13% Similarity=0.069 Sum_probs=29.4
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-CCHHHHHHhhcC
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-DEEESFKRDLGS 253 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-~~~~~~~~~~~~ 253 (350)
+..|..++|+.|++....|.+ .|-.++++-+.-+ -+.+++.++++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-------~gi~~~~~di~~~~~s~~el~~~l~~ 48 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE-------NQIDYTEKNIVSNSMTVDELKSILRL 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence 456788899999987665533 3322555544444 367777777764
No 462
>PHA03075 glutaredoxin-like protein; Provisional
Probab=54.89 E-value=21 Score=27.10 Aligned_cols=27 Identities=22% Similarity=0.506 Sum_probs=22.5
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHh
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNEL 66 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~ 66 (350)
+++-|-=|.|+.|......|.++..+|
T Consensus 4 tLILfGKP~C~vCe~~s~~l~~ledeY 30 (123)
T PHA03075 4 TLILFGKPLCSVCESISEALKELEDEY 30 (123)
T ss_pred eEEEeCCcccHHHHHHHHHHHHhhccc
Confidence 788899999999998888886666655
No 463
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=54.83 E-value=27 Score=28.75 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=28.9
Q ss_pred EEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEEC
Q 018808 40 IGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSG 79 (350)
Q Consensus 40 ~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~ 79 (350)
+|.+|+..-||+|-...+.|.++.+.+.+ +++....+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~---~~i~~~p~ 37 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPD---VEIEWRPF 37 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTT---CEEEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcC---CcEEEecc
Confidence 46788889999999999999999999832 44555443
No 464
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=54.51 E-value=17 Score=29.93 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=25.8
Q ss_pred EEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeC
Q 018808 203 YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 240 (350)
Q Consensus 203 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~ 240 (350)
.|..|.|+.|-...|.+.++..+++.+ +.+-.|..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~---i~~~~i~~ 36 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK---IEFRFIPG 36 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT---EEEEEEE-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc---EEEEEEEc
Confidence 588999999999999999999999876 55555444
No 465
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=54.11 E-value=56 Score=27.44 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=50.3
Q ss_pred EEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCcc-------ccCCchhHHHHHH
Q 018808 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLA-------LPFKDKSREKLAR 271 (350)
Q Consensus 199 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 271 (350)
-.+..|.-..|+.|...+..+.. .. ..+.|..|.++.+.+.++.+...+.+.. ++...|.. -..
T Consensus 110 ~rlalFvkd~C~~C~~~~~~l~a-----~~--~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G--~w~ 180 (200)
T TIGR03759 110 GRLALFVKDDCVACDARVQRLLA-----DN--APLDLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNHDNG--RWL 180 (200)
T ss_pred CeEEEEeCCCChHHHHHHHHHhc-----CC--CceeEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEecCcc--hHH
Confidence 34556666899999888776632 22 3499999998888888888887654211 22223332 344
Q ss_pred HcCC-CCccEEEEECCCC
Q 018808 272 YFEL-STLPTLVIIGPDG 288 (350)
Q Consensus 272 ~~~v-~~~P~~~lid~~G 288 (350)
.||+ ..+|..+. ..+|
T Consensus 181 ~lg~~g~lP~~l~-q~~g 197 (200)
T TIGR03759 181 QLGLQGQLPAVVQ-QVNG 197 (200)
T ss_pred HccCCCCCCEEEE-ecCC
Confidence 5675 34777744 4554
No 466
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=53.80 E-value=66 Score=24.15 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHH---HhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCC--ccEEEEECCC
Q 018808 213 AEFTPRLVEVYEK---LKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST--LPTLVIIGPD 287 (350)
Q Consensus 213 ~~~~~~l~~~~~~---~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~P~~~lid~~ 287 (350)
......+.+++++ ++++ +.++.++.+.. ....+.||+.. +|.+.+.+-+
T Consensus 30 ~~~~~~~~~vAk~~~~~kgk---i~Fv~~d~~~~-----------------------~~~~~~fgl~~~~~P~i~i~~~~ 83 (111)
T cd03072 30 ESLKEFKQAVARQLISEKGA---INFLTADGDKF-----------------------RHPLLHLGKTPADLPVIAIDSFR 83 (111)
T ss_pred HHHHHHHHHHHHHHHhcCce---EEEEEEechHh-----------------------hhHHHHcCCCHhHCCEEEEEcch
Confidence 4556778888888 7755 77776665521 22678899987 8999999876
Q ss_pred C
Q 018808 288 G 288 (350)
Q Consensus 288 G 288 (350)
+
T Consensus 84 ~ 84 (111)
T cd03072 84 H 84 (111)
T ss_pred h
Confidence 5
No 467
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=52.57 E-value=1.4e+02 Score=28.69 Aligned_cols=109 Identities=12% Similarity=0.126 Sum_probs=68.9
Q ss_pred CCceeeccccCCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHH-H------------------
Q 018808 186 DGRKISVSDLEGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEE-S------------------ 246 (350)
Q Consensus 186 ~g~~v~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~-~------------------ 246 (350)
+++.+++.+++|..-+|...++- ..|..-+...+...+++.+++ |-||-|..+.+.+ +
T Consensus 285 ~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r~--VlvVPv~~~~~~~~~~~~~gfg~~s~~a~~~p~ 361 (453)
T PLN03098 285 TNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKRG--VLLIPVVWGENKDPQPKKKGFGRSSKAAASLPS 361 (453)
T ss_pred CCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHcC--cEEEEEecCCCCccccccccccccchhhhcCCC
Confidence 57789999999965444444443 456666777788888999988 8888888763321 1
Q ss_pred -------------HHHhh-cCCCCccccCCchh-HH---HHHHHcCCC-CccEEEEECCCCCEEeccchh
Q 018808 247 -------------FKRDL-GSMPWLALPFKDKS-RE---KLARYFELS-TLPTLVIIGPDGKTLHSNVAE 297 (350)
Q Consensus 247 -------------~~~~~-~~~~~~~~~~~~~~-~~---~~~~~~~v~-~~P~~~lid~~G~i~~~~~~~ 297 (350)
.+..+ .+..|.-.|+..+. .. +..+.=|+. +-|.++.+-.||+|..+..|.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~kr~~a~pv~~~~W~~wi~~q~~~~gv~~~~~vyi~lr~dGrVr~SG~G~ 431 (453)
T PLN03098 362 IGDDFEKRAQSAAAKSVLKGEKRFKAEVVSPAEWERWIRDQQESEGVTPGEDVYIILRLDGRVRRSGRGM 431 (453)
T ss_pred ccchhhhhhHHHHHHHhhhcccceEEeecchHHHHHHHHHHHHhcCCCCCCceEEEEeeCCeEecCCCCC
Confidence 11111 13346666666432 21 122222442 347788999999999999884
No 468
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=50.57 E-value=34 Score=26.64 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=25.3
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC---CHHHHHhHHhc
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE---DDEAFKGYFSK 92 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~---~~~~~~~~~~~ 92 (350)
+..|..++|+.|+.....|.+ ++ +.+-.+++.. +.+++.++++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-------~g-i~~~~idi~~~~~~~~eL~~~l~~ 48 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-------HD-IPFTERNIFSSPLTIDEIKQILRM 48 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cC-CCcEEeeccCChhhHHHHHHHHHH
Confidence 345777999999996655543 22 4444444432 33455555544
No 469
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=50.18 E-value=27 Score=26.26 Aligned_cols=54 Identities=11% Similarity=0.201 Sum_probs=31.1
Q ss_pred HHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCC
Q 018808 59 LAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVM 116 (350)
Q Consensus 59 l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~ 116 (350)
|.+...++.+.+ +.++.|.+.+... +++|++...|...-+ .|..+.+.+.++..
T Consensus 2 L~~~~~~l~~~g-v~lv~I~~g~~~~-~~~f~~~~~~p~~ly--~D~~~~lY~~lg~~ 55 (115)
T PF13911_consen 2 LSRRKPELEAAG-VKLVVIGCGSPEG-IEKFCELTGFPFPLY--VDPERKLYKALGLK 55 (115)
T ss_pred hhHhHHHHHHcC-CeEEEEEcCCHHH-HHHHHhccCCCCcEE--EeCcHHHHHHhCCc
Confidence 444556665564 8899998775543 777765544432222 23334666666654
No 470
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=49.99 E-value=27 Score=28.75 Aligned_cols=40 Identities=15% Similarity=0.017 Sum_probs=29.8
Q ss_pred EEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 018808 200 IGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241 (350)
Q Consensus 200 vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d 241 (350)
.|.+|+..-||+|....+.|.++.+++.+- +++...+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~--~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDV--EIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTC--EEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCC--cEEEeccccc
Confidence 367788889999999999999999998331 2555555443
No 471
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=48.14 E-value=48 Score=25.06 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=25.0
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC---CHHHHHhHHhc
Q 018808 42 LYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE---DDEAFKGYFSK 92 (350)
Q Consensus 42 v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~---~~~~~~~~~~~ 92 (350)
..|+.++|+.|+.....|.+ ++ +.+-.+++.. +.+++.++++.
T Consensus 3 ~iY~~~~C~~c~ka~~~L~~-------~g-i~~~~idi~~~~~~~~el~~~~~~ 48 (115)
T cd03032 3 KLYTSPSCSSCRKAKQWLEE-------HQ-IPFEERNLFKQPLTKEELKEILSL 48 (115)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC-CceEEEecCCCcchHHHHHHHHHH
Confidence 35677999999997666543 22 4444554433 34445555443
No 472
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=47.57 E-value=1.2e+02 Score=22.71 Aligned_cols=66 Identities=24% Similarity=0.336 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEEEECCCC
Q 018808 216 TPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLVIIGPDG 288 (350)
Q Consensus 216 ~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G 288 (350)
..-|++-.+++++.+ ..=+.|+++ +.+.+.+...--+ .++.......++++.+++..+|.+ |...|
T Consensus 37 ~~WL~~~~~~L~~l~--AvGlVVnV~-t~~~l~~Lr~lap--gl~l~P~sgddLa~rL~l~hYPvL--it~tg 102 (105)
T TIGR03765 37 RQWLQQNAAALKSLG--AVGLVVNVE-TAAALQRLRALAP--GLPLLPVSGDDLAERLGLRHYPVL--ITATG 102 (105)
T ss_pred HHHHHHHHHHHHHCC--CeEEEEecC-CHHHHHHHHHHcC--CCcccCCCHHHHHHHhCCCcccEE--EecCc
Confidence 345777788888776 444556665 4455544443222 233444445679999999999964 44444
No 473
>PRK09301 circadian clock protein KaiB; Provisional
Probab=47.27 E-value=75 Score=23.65 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=48.8
Q ss_pred CCCEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCC
Q 018808 196 EGKTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFEL 275 (350)
Q Consensus 196 ~gk~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 275 (350)
++.++|=-|.+..-|-....+..+.++.+++.... +++=.|.+-+. .++++.+++
T Consensus 4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~--y~LeVIDv~~q-----------------------PelAE~~~I 58 (103)
T PRK09301 4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGV--YALKVIDVLKN-----------------------PQLAEEDKI 58 (103)
T ss_pred CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCc--eEEEEEEcccC-----------------------HhHHhHCCe
Confidence 34577777888888899999999999988766543 55555554433 458999999
Q ss_pred CCccEEEEECC
Q 018808 276 STLPTLVIIGP 286 (350)
Q Consensus 276 ~~~P~~~lid~ 286 (350)
.++||++=+.|
T Consensus 59 vATPTLIK~~P 69 (103)
T PRK09301 59 LATPTLAKILP 69 (103)
T ss_pred EEecHHhhcCC
Confidence 99999876655
No 474
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=47.04 E-value=80 Score=22.73 Aligned_cols=64 Identities=17% Similarity=0.133 Sum_probs=46.8
Q ss_pred CEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCC
Q 018808 198 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 277 (350)
Q Consensus 198 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 277 (350)
++++=-|.+..-|-+...+..+.++.+++.... +++=.|.+-+. .++++.+++.+
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~--y~LeVIDv~~q-----------------------P~lAE~~~IvA 57 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGV--YALKVIDVLKN-----------------------PQLAEEDKILA 57 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCc--eEEEEEEcccC-----------------------HhHHhHCCEEE
Confidence 456666777788889999999999988766443 55555544433 45899999999
Q ss_pred ccEEEEECC
Q 018808 278 LPTLVIIGP 286 (350)
Q Consensus 278 ~P~~~lid~ 286 (350)
+||++=..|
T Consensus 58 TPtLIK~~P 66 (87)
T TIGR02654 58 TPTLSKILP 66 (87)
T ss_pred ecHHhhcCC
Confidence 999877655
No 475
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=45.87 E-value=37 Score=23.29 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=13.3
Q ss_pred EEeccCCccChhhHHHHHH
Q 018808 203 YFSMSSYKASAEFTPRLVE 221 (350)
Q Consensus 203 ~f~~~~C~~C~~~~~~l~~ 221 (350)
.+..++||+|.+..-.|.+
T Consensus 4 Ly~~~~sp~~~kv~~~L~~ 22 (77)
T cd03041 4 LYEFEGSPFCRLVREVLTE 22 (77)
T ss_pred EecCCCCchHHHHHHHHHH
Confidence 4566799999876655533
No 476
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=45.57 E-value=92 Score=29.42 Aligned_cols=26 Identities=12% Similarity=0.420 Sum_probs=21.9
Q ss_pred HHHhhcCCCCcceEEEECCCCeEEec
Q 018808 108 KLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 108 ~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
.+...|.+..+|..++|+..|..+..
T Consensus 68 qFs~IYp~v~vPs~ffIg~sGtpLev 93 (506)
T KOG2507|consen 68 QFSAIYPYVSVPSIFFIGFSGTPLEV 93 (506)
T ss_pred hhhhhcccccccceeeecCCCceeEE
Confidence 56677888999999999999987763
No 477
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=45.14 E-value=26 Score=23.40 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=19.5
Q ss_pred EEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeC
Q 018808 203 YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 240 (350)
Q Consensus 203 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~ 240 (350)
.|+.++|++|++..-.|.+. +-.++.+-++.
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~-------~l~~~~~~v~~ 33 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEK-------GIDVPLVTVDL 33 (74)
T ss_pred EEeCCCCcchHHHHHHHHHc-------CCCceEEEeec
Confidence 46677899998876665443 21256665554
No 478
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=44.32 E-value=1.1e+02 Score=24.22 Aligned_cols=62 Identities=29% Similarity=0.373 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCCccEEE
Q 018808 216 TPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELSTLPTLV 282 (350)
Q Consensus 216 ~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~ 282 (350)
...|.+-.+++++.+ ..=+.|+++ +.+.+.+...--+ .+++......++++.+++..+|.++
T Consensus 75 ~~WL~~~~~~L~~l~--AvGlVVNV~-t~~~L~~Lr~lap--gl~l~P~sgddLA~rL~l~HYPvLI 136 (142)
T PF11072_consen 75 RQWLQQNAEELKQLG--AVGLVVNVA-TEAALQRLRQLAP--GLPLLPVSGDDLARRLGLSHYPVLI 136 (142)
T ss_pred HHHHHHHHHHHHHCC--CeEEEEecC-CHHHHHHHHHHcC--CCeecCCCHHHHHHHhCCCcccEEe
Confidence 445777778887766 444556665 5555554444222 2233334456799999999999653
No 479
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=43.80 E-value=41 Score=26.30 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=26.6
Q ss_pred EEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-CCHHHHHHhhcC
Q 018808 202 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-DEEESFKRDLGS 253 (350)
Q Consensus 202 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-~~~~~~~~~~~~ 253 (350)
..|..++|+.|++....|. +.|-.++++-+.-+ -+.+++.++++.
T Consensus 3 ~iY~~~~C~~crkA~~~L~-------~~~i~~~~~d~~~~~~s~~eL~~~l~~ 48 (132)
T PRK13344 3 KIYTISSCTSCKKAKTWLN-------AHQLSYKEQNLGKEPLTKEEILAILTK 48 (132)
T ss_pred EEEeCCCCHHHHHHHHHHH-------HcCCCeEEEECCCCCCCHHHHHHHHHH
Confidence 4567889999998765553 33412444444333 366676666654
No 480
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=43.80 E-value=44 Score=21.45 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=19.4
Q ss_pred EEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 018808 203 YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241 (350)
Q Consensus 203 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d 241 (350)
.|+.++||.|.+..-.|... +- .++++.++.+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-----~i--~~~~~~~~~~ 34 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-----GL--PYELVPVDLG 34 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-----CC--CcEEEEeCCC
Confidence 46677899998766655433 21 2666665543
No 481
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=43.75 E-value=1.5e+02 Score=22.89 Aligned_cols=63 Identities=19% Similarity=0.186 Sum_probs=40.4
Q ss_pred hhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEEECCCCeEEec
Q 018808 54 RFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVILDENGKVLSD 133 (350)
Q Consensus 54 ~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~ 133 (350)
..+-.|....+.+++++ +.+--.+...+++.|.+.. .-..+-..-|....|.+++ ||+++..
T Consensus 24 ~eL~~~a~~~~~Lk~~g-v~v~RyNL~~~P~aF~~n~--------------~V~~~L~~~G~e~LPitlV---dGeiv~~ 85 (123)
T PF06953_consen 24 PELVRFAADLDWLKEQG-VEVERYNLAQNPQAFVENP--------------EVNQLLQTEGAEALPITLV---DGEIVKT 85 (123)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEEETTT-TTHHHHSH--------------HHHHHHHHH-GGG-SEEEE---TTEEEEE
T ss_pred HHHHHHHHHHHHHHhCC-ceEEEEccccCHHHHHhCH--------------HHHHHHHHcCcccCCEEEE---CCEEEEe
Confidence 45556677777777776 8888888887776554421 1225556678889998877 8998875
Q ss_pred C
Q 018808 134 G 134 (350)
Q Consensus 134 ~ 134 (350)
+
T Consensus 86 G 86 (123)
T PF06953_consen 86 G 86 (123)
T ss_dssp S
T ss_pred c
Confidence 3
No 482
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=43.75 E-value=37 Score=28.01 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=23.9
Q ss_pred EEEEeccCCccChhhHHHHHHHHHHHh
Q 018808 201 GLYFSMSSYKASAEFTPRLVEVYEKLK 227 (350)
Q Consensus 201 lv~f~~~~C~~C~~~~~~l~~~~~~~~ 227 (350)
|.+|+.+.||+|-...+.|.++.+++.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 557888899999999999999999983
No 483
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=41.79 E-value=65 Score=27.44 Aligned_cols=70 Identities=20% Similarity=0.239 Sum_probs=54.5
Q ss_pred CEEEEEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCCCCHHHHHHhhcCCCCccccCCchhHHHHHHHcCCCC
Q 018808 198 KTIGLYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLDDEEESFKRDLGSMPWLALPFKDKSREKLARYFELST 277 (350)
Q Consensus 198 k~vlv~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 277 (350)
-.++|..|-+.-+-|-.+...|.=++.+++. ++++.|.... -....+|...+
T Consensus 160 ~~i~VhIYEdgi~gcealn~~~~cLAAeyP~----vKFckikss~------------------------~gas~~F~~n~ 211 (273)
T KOG3171|consen 160 TTIVVHIYEDGIKGCEALNSSLTCLAAEYPI----VKFCKIKSSN------------------------TGASDRFSLNV 211 (273)
T ss_pred EEEEEEEecCCCchHHHHhhhHHHhhccCCc----eeEEEeeecc------------------------ccchhhhcccC
Confidence 4678888988888998888888888888875 7788776532 23567888999
Q ss_pred ccEEEEECCCCCEEeccch
Q 018808 278 LPTLVIIGPDGKTLHSNVA 296 (350)
Q Consensus 278 ~P~~~lid~~G~i~~~~~~ 296 (350)
+|++++. ++|.++...+.
T Consensus 212 lP~LliY-kgGeLIgNFv~ 229 (273)
T KOG3171|consen 212 LPTLLIY-KGGELIGNFVS 229 (273)
T ss_pred CceEEEe-eCCchhHHHHH
Confidence 9999999 99998865543
No 484
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=41.64 E-value=32 Score=30.18 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=24.3
Q ss_pred CCc-EEEEEecCCChhhhhhhHHHHHHHHHhc
Q 018808 37 KGK-IGLYFSASWCGPCQRFTPILAEVYNELS 67 (350)
Q Consensus 37 ~gk-~~v~F~~~~C~~C~~~~~~l~~l~~~~~ 67 (350)
.|| .+++.-+.|||+|....=.|-....+|.
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcC
Confidence 588 8888888999999987766666666664
No 485
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=41.19 E-value=1.1e+02 Score=23.04 Aligned_cols=47 Identities=23% Similarity=0.303 Sum_probs=38.3
Q ss_pred CCCCcEEEEEecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCC
Q 018808 35 SLKGKIGLYFSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDE 81 (350)
Q Consensus 35 ~~~gk~~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~ 81 (350)
+..|..++.|--.--|.-..+...++++++.+.++.++.++.|.-|.
T Consensus 18 d~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~ 64 (120)
T cd03074 18 DLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDD 64 (120)
T ss_pred ccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCcc
Confidence 34555788888888888899999999999999877789999996654
No 486
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=40.47 E-value=56 Score=26.86 Aligned_cols=27 Identities=33% Similarity=0.704 Sum_probs=23.6
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhc
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELS 67 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~ 67 (350)
+.+|+-+.||.|-...+.|.++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 456777899999999999999999984
No 487
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=39.93 E-value=27 Score=26.01 Aligned_cols=44 Identities=14% Similarity=0.291 Sum_probs=26.4
Q ss_pred EEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECC-CCHHHHHhHHhc
Q 018808 42 LYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGD-EDDEAFKGYFSK 92 (350)
Q Consensus 42 v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d-~~~~~~~~~~~~ 92 (350)
..|+.++|+.|+.....|.+ ++ .+.++-+.-+ .+.++++.+++.
T Consensus 2 ~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~~~p~s~~eL~~~l~~ 47 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYRKDGLDAATLERWLAK 47 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecccCCCCHHHHHHHHHH
Confidence 46788999999997766543 22 3555555433 245555555443
No 488
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=38.96 E-value=36 Score=22.86 Aligned_cols=31 Identities=6% Similarity=0.136 Sum_probs=19.1
Q ss_pred EEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeC
Q 018808 203 YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISL 240 (350)
Q Consensus 203 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~ 240 (350)
.|+.++|+.|++..-.|.+. |-.++++.|..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~-------gi~~e~~~i~~ 33 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKAL-------GLELNLKEVNL 33 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHc-------CCCCEEEEecC
Confidence 46778899998665544332 22266766654
No 489
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=38.38 E-value=18 Score=32.49 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=23.1
Q ss_pred EEEEEEeccCCccChhhHHHHHHHHHHHh
Q 018808 199 TIGLYFSMSSYKASAEFTPRLVEVYEKLK 227 (350)
Q Consensus 199 ~vlv~f~~~~C~~C~~~~~~l~~~~~~~~ 227 (350)
+|-+-||++|||..+...|..+-.+.-+.
T Consensus 78 ~vs~~fy~s~C~fsr~~~~~fd~~~sl~~ 106 (319)
T KOG2640|consen 78 YVSLLFYASWCPFSRAVRPEFDVRSSLFS 106 (319)
T ss_pred cccccchhcccCcccccCcccchhhhhcc
Confidence 67778999999998888887766665554
No 490
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=38.24 E-value=1.3e+02 Score=20.39 Aligned_cols=57 Identities=25% Similarity=0.311 Sum_probs=34.0
Q ss_pred EecCCChhhhhhhHHHHHHHHHhccCCCEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcceEEE
Q 018808 44 FSASWCGPCQRFTPILAEVYNELSRQGDFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIPHLVI 123 (350)
Q Consensus 44 F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~l 123 (350)
+..++||+|++..-.+.. +.+ .++++.++.....+ .+.+......+|.+.
T Consensus 2 y~~~~Sp~~~kv~~~l~~--~~i----~~~~~~v~~~~~~~-----------------------~~~~~~p~~~vPvL~- 51 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEE--KGI----PYELVPVDPEEKRP-----------------------EFLKLNPKGKVPVLV- 51 (75)
T ss_dssp EEETTSHHHHHHHHHHHH--HTE----EEEEEEEBTTSTSH-----------------------HHHHHSTTSBSSEEE-
T ss_pred CCcCCChHHHHHHHHHHH--cCC----eEEEeccCcccchh-----------------------HHHhhcccccceEEE-
Confidence 467899999986655442 222 35566665443322 445555666788886
Q ss_pred ECCCCeEEe
Q 018808 124 LDENGKVLS 132 (350)
Q Consensus 124 id~~G~v~~ 132 (350)
.| |.++.
T Consensus 52 ~~--g~~l~ 58 (75)
T PF13417_consen 52 DD--GEVLT 58 (75)
T ss_dssp ET--TEEEE
T ss_pred EC--CEEEe
Confidence 43 77665
No 491
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=37.50 E-value=1.5e+02 Score=25.20 Aligned_cols=34 Identities=12% Similarity=0.157 Sum_probs=24.3
Q ss_pred EEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC
Q 018808 203 YFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD 241 (350)
Q Consensus 203 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d 241 (350)
-|-+..|..|..-...|.++..+ . + +-.++..+|
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~-~--~--Vi~LafHVD 37 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAAR-P--D--VIALAFHVD 37 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHH-T--S--SEEEEEE-S
T ss_pred EecCCCCCCCcHHHHHHHHhhcC-C--C--EEEEEecCC
Confidence 46677999999999999999887 2 3 888888887
No 492
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=37.11 E-value=66 Score=24.33 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=29.0
Q ss_pred EEEeccCCccChhhHHHHHHHHHHHhcCCCcEEEEEEeCC-CCHHHHHHhhcCCC
Q 018808 202 LYFSMSSYKASAEFTPRLVEVYEKLKGKGESFEIVLISLD-DEEESFKRDLGSMP 255 (350)
Q Consensus 202 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vv~v~~d-~~~~~~~~~~~~~~ 255 (350)
..|..+.|+.|++....|.+. |..++++-+.-+ -+.++++++++..+
T Consensus 3 ~iy~~p~C~~crkA~~~L~~~-------gi~~~~~d~~~~p~s~~eL~~~l~~~g 50 (113)
T cd03033 3 IFYEKPGCANNARQKALLEAA-------GHEVEVRDLLTEPWTAETLRPFFGDLP 50 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------CCCcEEeehhcCCCCHHHHHHHHHHcC
Confidence 457788999999877655332 322555554444 26677777666443
No 493
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=35.93 E-value=91 Score=23.58 Aligned_cols=22 Identities=14% Similarity=0.481 Sum_probs=18.7
Q ss_pred hHHHHHhhcCCCCcceEEEECC
Q 018808 105 TRDKLDELFKVMGIPHLVILDE 126 (350)
Q Consensus 105 ~~~~l~~~~~v~~~P~~~lid~ 126 (350)
.+..+-++|+|..+|++++...
T Consensus 59 IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 59 IDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred EChhHHhhCCceEcCEEEEEcC
Confidence 3458899999999999999855
No 494
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=33.59 E-value=1.1e+02 Score=23.02 Aligned_cols=20 Identities=20% Similarity=0.627 Sum_probs=17.8
Q ss_pred HHHHHHcCCCCccEEEEECC
Q 018808 267 EKLARYFELSTLPTLVIIGP 286 (350)
Q Consensus 267 ~~~~~~~~v~~~P~~~lid~ 286 (350)
..+.++|+|..+|++++...
T Consensus 61 P~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 61 PRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred hhHHhhCCceEcCEEEEEcC
Confidence 45899999999999999955
No 495
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=32.52 E-value=78 Score=21.04 Aligned_cols=17 Identities=18% Similarity=-0.015 Sum_probs=12.7
Q ss_pred EEeccCCccChhhHHHH
Q 018808 203 YFSMSSYKASAEFTPRL 219 (350)
Q Consensus 203 ~f~~~~C~~C~~~~~~l 219 (350)
.|+.++||.|.+..-.|
T Consensus 3 ly~~~~~~~~~~v~~~l 19 (73)
T cd03059 3 LYSGPDDVYSHRVRIVL 19 (73)
T ss_pred EEECCCChhHHHHHHHH
Confidence 46678899998776555
No 496
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.33 E-value=96 Score=26.73 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=0.0
Q ss_pred hHHHHHHHcCCCCccEEEEECCCCCEEeccchhhhhhcCCccCCCCccchHHHHHHHHHHHhccccccee
Q 018808 265 SREKLARYFELSTLPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRAKEESQTLESVL 334 (350)
Q Consensus 265 ~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~ 334 (350)
.+...+++.||+++|++++ +|++.-...- +++.++................+++
T Consensus 172 ~d~~~A~e~gI~gVP~fv~---d~~~~V~Gaq-------------~~~v~~~al~~~~~~~~~~~~~~~~ 225 (225)
T COG2761 172 QDEAAAQEMGIRGVPTFVF---DGKYAVSGAQ-------------PYDVLEDALRQLLAEKAEEHKPPLL 225 (225)
T ss_pred HHHHHHHHCCCccCceEEE---cCcEeecCCC-------------CHHHHHHHHHHHHhcccccCCCCCC
No 497
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=31.63 E-value=3.6e+02 Score=23.69 Aligned_cols=53 Identities=6% Similarity=0.114 Sum_probs=33.0
Q ss_pred cCCCEEEEEEeccCCcc-ChhhHHHHHHHHHHHhcCCC-cEEEEEEeCCCCHHHH
Q 018808 195 LEGKTIGLYFSMSSYKA-SAEFTPRLVEVYEKLKGKGE-SFEIVLISLDDEEESF 247 (350)
Q Consensus 195 ~~gk~vlv~f~~~~C~~-C~~~~~~l~~~~~~~~~~~~-~~~vv~v~~d~~~~~~ 247 (350)
+...+.+-.|+...-+. -....+.+.++.++|...+. ++.+-.|..+.+++..
T Consensus 23 L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~ 77 (271)
T PF09822_consen 23 LDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEA 77 (271)
T ss_pred CCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHH
Confidence 34445555555543333 34566677778888876664 7899888876555443
No 498
>PF10589 NADH_4Fe-4S: NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; InterPro: IPR019575 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the F subunit of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. This entry represents the iron-sulphur binding domain of the F subunit.; GO: 0055114 oxidation-reduction process; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1.
Probab=31.52 E-value=27 Score=21.70 Aligned_cols=22 Identities=36% Similarity=0.675 Sum_probs=17.0
Q ss_pred CCChhhhhhhHHHHHHHHHhcc
Q 018808 47 SWCGPCQRFTPILAEVYNELSR 68 (350)
Q Consensus 47 ~~C~~C~~~~~~l~~l~~~~~~ 68 (350)
-.|.+|+.-++.|.++.+++.+
T Consensus 17 GkC~PCR~Gt~~l~~~l~~i~~ 38 (46)
T PF10589_consen 17 GKCTPCREGTRQLAEILEKIVR 38 (46)
T ss_dssp S--HHHHCCCCHHHHHHHHHTB
T ss_pred CCCCCcHhHHHHHHHHHHHHHc
Confidence 3689999999999999888853
No 499
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=31.13 E-value=1.8e+02 Score=22.68 Aligned_cols=81 Identities=11% Similarity=0.110 Sum_probs=0.0
Q ss_pred EEEEecCCChhhhhhhHHHHHHHHHhccCC-CEEEEEEECCCCHHHHHhHHhcCCCcccccCChhhHHHHHhhcCCCCcc
Q 018808 41 GLYFSASWCGPCQRFTPILAEVYNELSRQG-DFEVIFVSGDEDDEAFKGYFSKMPWLAVPFSDSETRDKLDELFKVMGIP 119 (350)
Q Consensus 41 ~v~F~~~~C~~C~~~~~~l~~l~~~~~~~~-~~~~v~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P 119 (350)
++.|-+..=| ...|+++.+....-+ .+.+-++.-++-.+..+...+-..-..- .....+..+-++|+|+.+|
T Consensus 1 ~~vFvS~SMP-----~~~Lk~l~~~a~~~g~~~VlRG~~~~~~~~T~~~i~~L~~~~~~--~~v~IdP~lF~~f~I~~VP 73 (130)
T TIGR02742 1 VMVFVSFSMP-----EPLLKQLLDQAEALGAPLVIRGLLDNGFKATATRIQSLIKDGGK--SGVQIDPQWFKQFDITAVP 73 (130)
T ss_pred CEEEEEcCCC-----HHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHhcCCC--CcEEEChHHHhhcCceEcC
Q ss_pred eEEEECCCC
Q 018808 120 HLVILDENG 128 (350)
Q Consensus 120 ~~~lid~~G 128 (350)
++++...+.
T Consensus 74 a~V~~~~~~ 82 (130)
T TIGR02742 74 AFVVVKDGL 82 (130)
T ss_pred EEEEECCCC
No 500
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=30.62 E-value=67 Score=27.75 Aligned_cols=35 Identities=20% Similarity=0.327 Sum_probs=25.6
Q ss_pred ccEEEEECCCCCEEeccchhhhhhcCCccCCCCccchHHHHHHHHH
Q 018808 278 LPTLVIIGPDGKTLHSNVAEAIEEHGVGAFPFTPEKFAELAEIQRA 323 (350)
Q Consensus 278 ~P~~~lid~~G~i~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 323 (350)
.-.++++|..|+|+....|.. +++..+.|....+.
T Consensus 248 ~GyV~L~D~s~kIRW~g~G~a-----------Tp~Eve~L~~~~k~ 282 (287)
T KOG4614|consen 248 TGYVLLLDKSGKIRWQGFGTA-----------TPEEVEQLLSCTKL 282 (287)
T ss_pred eEEEEEEccCceEEEeecCCC-----------CHHHHHHHHHHHHH
Confidence 346789999999999988854 46667776655443
Done!