Query 018809
Match_columns 350
No_of_seqs 411 out of 3366
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:12:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1491 Predicted GTP-binding 100.0 4.1E-72 8.9E-77 511.3 24.5 345 1-349 1-352 (391)
2 PRK09601 GTP-binding protein Y 100.0 5.4E-72 1.2E-76 530.5 24.9 323 24-349 2-325 (364)
3 PTZ00258 GTP-binding protein; 100.0 2.2E-71 4.8E-76 532.0 25.7 335 15-349 12-349 (390)
4 TIGR00092 GTP-binding protein 100.0 3.4E-70 7.3E-75 518.3 26.8 323 24-349 2-329 (368)
5 COG0012 Predicted GTPase, prob 100.0 5.7E-70 1.2E-74 508.7 20.9 325 23-349 1-333 (372)
6 PRK09602 translation-associate 100.0 9.8E-51 2.1E-55 393.4 21.0 315 25-348 2-373 (396)
7 cd01900 YchF YchF subfamily. 100.0 4.8E-48 1E-52 356.5 20.1 273 27-302 1-274 (274)
8 COG1163 DRG Predicted GTPase [ 100.0 3.8E-37 8.2E-42 280.9 2.1 263 24-348 63-338 (365)
9 cd01899 Ygr210 Ygr210 subfamil 100.0 4.4E-30 9.5E-35 242.5 14.7 249 27-283 1-269 (318)
10 KOG1486 GTP-binding protein DR 99.9 8E-28 1.7E-32 212.3 4.5 261 23-348 61-337 (364)
11 cd04867 TGS_YchF_C TGS_YchF_C: 99.9 9.6E-25 2.1E-29 161.0 4.0 46 304-349 1-46 (83)
12 PF06071 YchF-GTPase_C: Protei 99.9 2.2E-24 4.8E-29 160.2 2.1 46 304-349 1-46 (84)
13 COG1159 Era GTPase [General fu 99.9 2.9E-23 6.3E-28 189.3 3.5 196 24-238 6-221 (298)
14 COG1120 FepC ABC-type cobalami 99.8 4.2E-21 9E-26 174.5 6.8 174 14-206 18-223 (258)
15 KOG1487 GTP-binding protein DR 99.8 4.5E-22 9.7E-27 176.7 -1.6 264 22-348 56-331 (358)
16 COG4152 ABC-type uncharacteriz 99.8 1.7E-20 3.6E-25 166.2 6.0 174 13-207 17-215 (300)
17 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 5.9E-20 1.3E-24 166.2 3.3 173 12-205 18-221 (254)
18 KOG1489 Predicted GTP-binding 99.8 6.3E-19 1.4E-23 161.1 9.4 95 20-130 192-286 (366)
19 COG0411 LivG ABC-type branched 99.8 1E-20 2.3E-25 168.0 -2.7 175 13-207 19-235 (250)
20 COG4555 NatA ABC-type Na+ tran 99.8 2E-19 4.3E-24 155.2 4.1 175 13-207 17-218 (245)
21 COG4586 ABC-type uncharacteriz 99.8 3E-19 6.6E-24 160.5 4.4 163 13-207 39-242 (325)
22 COG1127 Ttg2A ABC-type transpo 99.8 7.2E-19 1.6E-23 155.8 6.3 173 15-207 25-231 (263)
23 cd01896 DRG The developmentall 99.8 6.1E-19 1.3E-23 160.4 5.2 219 26-310 2-233 (233)
24 PRK12298 obgE GTPase CgtA; Rev 99.7 1.5E-18 3.2E-23 168.6 7.7 174 21-211 156-349 (390)
25 COG1131 CcmA ABC-type multidru 99.7 5.3E-19 1.2E-23 165.9 3.5 175 12-205 19-220 (293)
26 COG1135 AbcC ABC-type metal io 99.7 7.1E-19 1.5E-23 161.0 3.8 176 12-207 20-227 (339)
27 COG0536 Obg Predicted GTPase [ 99.7 3.8E-18 8.2E-23 157.9 7.1 115 15-152 150-264 (369)
28 COG1116 TauB ABC-type nitrate/ 99.7 2.9E-18 6.4E-23 153.5 5.8 166 13-198 18-207 (248)
29 COG3638 ABC-type phosphate/pho 99.7 1.7E-17 3.7E-22 146.7 9.9 183 12-214 18-240 (258)
30 COG3842 PotA ABC-type spermidi 99.7 3.5E-18 7.6E-23 161.9 5.6 175 12-206 19-221 (352)
31 COG1125 OpuBA ABC-type proline 99.7 2.2E-18 4.7E-23 153.7 3.4 174 12-205 15-219 (309)
32 PRK13537 nodulation ABC transp 99.7 2.6E-18 5.7E-23 162.4 2.5 174 13-206 22-222 (306)
33 COG3839 MalK ABC-type sugar tr 99.7 2.7E-18 5.8E-23 161.9 2.5 172 14-205 19-217 (338)
34 COG1126 GlnQ ABC-type polar am 99.7 2.5E-17 5.4E-22 144.0 7.7 169 15-204 19-218 (240)
35 PRK13536 nodulation factor exp 99.7 3.3E-18 7.2E-23 163.8 2.1 174 13-206 56-256 (340)
36 COG1118 CysA ABC-type sulfate/ 99.7 1.7E-17 3.7E-22 151.7 5.8 175 11-205 15-221 (345)
37 COG1137 YhbG ABC-type (unclass 99.7 1.2E-18 2.5E-23 150.3 -1.7 173 15-207 21-224 (243)
38 TIGR01188 drrA daunorubicin re 99.7 1.3E-17 2.9E-22 157.4 2.5 174 13-206 8-208 (302)
39 TIGR00436 era GTP-binding prot 99.7 3E-17 6.5E-22 152.6 4.4 194 26-238 2-213 (270)
40 COG4559 ABC-type hemin transpo 99.7 7.9E-17 1.7E-21 140.2 6.0 166 15-205 18-224 (259)
41 TIGR02314 ABC_MetN D-methionin 99.7 7.9E-18 1.7E-22 161.1 -0.6 174 13-205 20-224 (343)
42 COG4604 CeuD ABC-type enteroch 99.7 8.7E-17 1.9E-21 138.5 5.6 175 14-207 17-221 (252)
43 TIGR03522 GldA_ABC_ATP gliding 99.7 1.8E-17 4E-22 156.4 1.5 174 13-207 17-217 (301)
44 cd03261 ABC_Org_Solvent_Resist 99.7 4.6E-17 1E-21 148.2 3.8 174 13-205 15-220 (235)
45 PRK09536 btuD corrinoid ABC tr 99.7 6.1E-17 1.3E-21 157.8 4.8 174 13-206 18-223 (402)
46 COG1117 PstB ABC-type phosphat 99.7 4.3E-16 9.2E-21 135.9 9.2 175 13-205 22-231 (253)
47 COG1124 DppF ABC-type dipeptid 99.6 2.2E-16 4.8E-21 140.4 7.4 169 13-203 22-223 (252)
48 COG4175 ProV ABC-type proline/ 99.6 9.1E-17 2E-21 147.3 4.9 172 15-206 45-249 (386)
49 PRK15494 era GTPase Era; Provi 99.6 1E-16 2.3E-21 153.5 5.5 201 15-238 36-265 (339)
50 PRK11650 ugpC glycerol-3-phosp 99.6 1.6E-17 3.6E-22 159.9 -0.0 173 13-205 19-218 (356)
51 cd03259 ABC_Carb_Solutes_like 99.6 2.8E-17 6.1E-22 147.3 0.9 171 13-202 15-211 (213)
52 TIGR00960 3a0501s02 Type II (G 99.6 4.4E-17 9.6E-22 146.4 1.5 167 13-199 18-215 (216)
53 cd03226 ABC_cobalt_CbiO_domain 99.6 4.9E-17 1.1E-21 145.0 1.7 168 13-200 15-204 (205)
54 cd03265 ABC_DrrA DrrA is the A 99.6 4.3E-17 9.4E-22 146.9 1.2 174 13-205 15-215 (220)
55 TIGR01288 nodI ATP-binding ABC 99.6 6.4E-17 1.4E-21 152.8 2.4 173 13-205 19-218 (303)
56 PRK11432 fbpC ferric transport 99.6 2.5E-17 5.3E-22 158.3 -0.6 172 14-205 22-220 (351)
57 COG1134 TagH ABC-type polysacc 99.6 2.7E-16 5.9E-21 140.1 6.1 163 12-207 41-232 (249)
58 cd03293 ABC_NrtD_SsuB_transpor 99.6 5.5E-17 1.2E-21 146.2 1.4 173 13-204 19-216 (220)
59 TIGR03265 PhnT2 putative 2-ami 99.6 3.8E-17 8.3E-22 157.2 0.4 171 15-205 21-218 (353)
60 cd03268 ABC_BcrA_bacitracin_re 99.6 7.9E-17 1.7E-21 143.9 2.3 171 12-202 14-206 (208)
61 TIGR02315 ABC_phnC phosphonate 99.6 1.3E-16 2.9E-21 145.8 3.6 174 13-205 17-229 (243)
62 TIGR01186 proV glycine betaine 99.6 5E-17 1.1E-21 156.5 0.8 174 13-205 8-213 (363)
63 COG3840 ThiQ ABC-type thiamine 99.6 4.2E-16 9.1E-21 132.7 6.3 171 17-207 18-215 (231)
64 cd03224 ABC_TM1139_LivF_branch 99.6 2E-16 4.4E-21 142.6 4.6 172 13-204 15-214 (222)
65 cd03263 ABC_subfamily_A The AB 99.6 9.5E-17 2.1E-21 144.6 2.5 172 13-205 17-215 (220)
66 TIGR03410 urea_trans_UrtE urea 99.6 3.1E-16 6.7E-21 142.3 5.7 174 13-205 15-215 (230)
67 cd03256 ABC_PhnC_transporter A 99.6 8.5E-17 1.8E-21 146.9 1.9 174 13-205 16-228 (241)
68 cd03298 ABC_ThiQ_thiamine_tran 99.6 1E-16 2.2E-21 143.5 2.4 168 15-201 15-208 (211)
69 TIGR01184 ntrCD nitrate transp 99.6 7.6E-17 1.6E-21 146.4 1.5 171 15-204 2-197 (230)
70 PRK11153 metN DL-methionine tr 99.6 4.1E-17 8.9E-22 156.7 -0.4 174 13-205 20-224 (343)
71 PRK11247 ssuB aliphatic sulfon 99.6 2.2E-16 4.8E-21 145.7 4.4 172 14-205 28-217 (257)
72 cd03296 ABC_CysA_sulfate_impor 99.6 8.9E-17 1.9E-21 146.7 1.6 174 13-205 17-220 (239)
73 PRK10851 sulfate/thiosulfate t 99.6 1.6E-16 3.5E-21 152.9 3.4 174 13-205 17-220 (353)
74 cd03301 ABC_MalK_N The N-termi 99.6 7.3E-17 1.6E-21 144.6 0.9 171 13-202 15-211 (213)
75 COG3845 ABC-type uncharacteriz 99.6 2.2E-15 4.7E-20 145.7 10.8 171 12-202 18-220 (501)
76 TIGR02673 FtsE cell division A 99.6 1.7E-16 3.6E-21 142.4 2.7 166 13-198 17-213 (214)
77 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.6 1.2E-16 2.7E-21 143.7 1.8 167 13-199 19-217 (218)
78 PRK11000 maltose/maltodextrin 99.6 9.6E-17 2.1E-21 155.5 1.1 173 14-205 19-217 (369)
79 PRK11614 livF leucine/isoleuci 99.6 1.6E-16 3.5E-21 144.8 2.4 173 13-205 20-220 (237)
80 PRK09452 potA putrescine/sperm 99.6 8.2E-17 1.8E-21 155.9 0.4 171 15-205 31-228 (375)
81 cd03258 ABC_MetN_methionine_tr 99.6 9E-17 2E-21 146.0 0.7 174 13-205 20-224 (233)
82 cd03225 ABC_cobalt_CbiO_domain 99.6 1.1E-16 2.4E-21 143.3 1.0 165 14-198 17-210 (211)
83 TIGR03258 PhnT 2-aminoethylpho 99.6 7.7E-17 1.7E-21 155.5 -0.1 173 13-205 20-222 (362)
84 cd03218 ABC_YhbG The ABC trans 99.6 2.2E-16 4.8E-21 143.3 2.8 172 14-205 16-216 (232)
85 cd03269 ABC_putative_ATPase Th 99.6 2.1E-16 4.5E-21 141.4 2.6 168 14-201 16-207 (210)
86 cd03215 ABC_Carb_Monos_II This 99.6 3.7E-16 8E-21 136.8 4.0 152 15-199 17-181 (182)
87 cd03266 ABC_NatA_sodium_export 99.6 2.3E-16 5.1E-21 141.8 2.8 169 13-201 20-215 (218)
88 cd03262 ABC_HisP_GlnQ_permease 99.6 6.6E-16 1.4E-20 138.4 5.5 166 14-199 16-212 (213)
89 COG1129 MglA ABC-type sugar tr 99.6 2E-15 4.3E-20 148.4 9.2 173 12-205 22-228 (500)
90 TIGR01277 thiQ thiamine ABC tr 99.6 2.2E-16 4.7E-21 141.7 2.3 171 15-204 15-211 (213)
91 cd03229 ABC_Class3 This class 99.6 3.7E-16 8.1E-21 136.3 3.6 152 13-198 15-177 (178)
92 PRK09493 glnQ glutamine ABC tr 99.6 3.4E-16 7.3E-21 142.9 3.3 173 13-205 16-219 (240)
93 PRK11831 putative ABC transpor 99.6 3.4E-16 7.3E-21 145.5 3.3 173 14-205 23-227 (269)
94 PF02421 FeoB_N: Ferrous iron 99.6 9E-16 2E-20 130.2 5.6 59 26-101 2-60 (156)
95 cd03294 ABC_Pro_Gly_Bertaine T 99.6 1.3E-16 2.9E-21 148.2 0.6 173 14-205 40-244 (269)
96 COG1136 SalX ABC-type antimicr 99.6 1.6E-16 3.6E-21 141.8 1.0 167 12-199 19-219 (226)
97 TIGR02142 modC_ABC molybdenum 99.6 2.3E-16 5E-21 152.1 2.1 171 16-205 15-215 (354)
98 cd03219 ABC_Mj1267_LivG_branch 99.6 1.3E-16 2.7E-21 145.3 0.1 171 14-204 16-225 (236)
99 PRK13652 cbiO cobalt transport 99.6 1.4E-16 3E-21 148.7 0.4 175 13-206 19-222 (277)
100 PRK11607 potG putrescine trans 99.6 1.4E-16 3E-21 154.5 0.3 171 15-205 36-233 (377)
101 cd03257 ABC_NikE_OppD_transpor 99.6 4.7E-16 1E-20 140.7 3.8 170 13-201 20-225 (228)
102 COG0410 LivF ABC-type branched 99.6 2E-15 4.4E-20 133.4 7.6 176 11-205 16-220 (237)
103 PRK11144 modC molybdate transp 99.6 1.9E-16 4E-21 152.6 1.0 171 15-205 15-212 (352)
104 TIGR03411 urea_trans_UrtD urea 99.6 2.9E-16 6.4E-21 143.5 2.1 172 13-205 17-225 (242)
105 cd03260 ABC_PstB_phosphate_tra 99.6 6.4E-16 1.4E-20 139.9 4.3 171 13-205 15-223 (227)
106 PRK10908 cell division protein 99.6 2.3E-16 5E-21 142.4 1.2 168 14-201 18-216 (222)
107 cd03214 ABC_Iron-Siderophores_ 99.6 6.2E-16 1.3E-20 135.2 3.8 153 13-201 14-177 (180)
108 cd03264 ABC_drug_resistance_li 99.6 4E-16 8.7E-21 139.6 2.7 167 14-202 16-209 (211)
109 PRK10575 iron-hydroxamate tran 99.6 2.4E-16 5.2E-21 146.1 1.3 173 14-205 27-231 (265)
110 PRK10070 glycine betaine trans 99.6 1.4E-16 3.1E-21 155.2 -0.3 173 14-205 44-248 (400)
111 PRK13637 cbiO cobalt transport 99.6 2E-16 4.3E-21 148.4 0.5 175 12-205 21-228 (287)
112 cd03235 ABC_Metallic_Cations A 99.6 7.3E-16 1.6E-20 138.2 4.1 166 13-198 14-208 (213)
113 TIGR03864 PQQ_ABC_ATP ABC tran 99.6 2.5E-16 5.4E-21 143.5 1.1 172 14-205 17-215 (236)
114 TIGR03005 ectoine_ehuA ectoine 99.6 2.5E-16 5.5E-21 144.9 1.0 174 13-205 15-230 (252)
115 PRK13636 cbiO cobalt transport 99.6 2E-16 4.4E-21 148.0 0.4 176 13-207 21-227 (283)
116 PRK11231 fecE iron-dicitrate t 99.6 6.5E-16 1.4E-20 142.4 3.6 173 13-205 17-221 (255)
117 PRK13548 hmuV hemin importer A 99.6 3.8E-16 8.2E-21 144.3 2.0 174 13-205 17-224 (258)
118 PRK11300 livG leucine/isoleuci 99.6 6.2E-16 1.3E-20 142.4 3.2 174 13-205 20-237 (255)
119 PRK10771 thiQ thiamine transpo 99.6 3.2E-16 6.9E-21 142.4 1.2 172 15-205 16-213 (232)
120 TIGR03415 ABC_choXWV_ATP choli 99.6 1.5E-16 3.2E-21 154.0 -1.0 173 14-205 40-248 (382)
121 PRK12296 obgE GTPase CgtA; Rev 99.6 2.4E-15 5.2E-20 149.1 7.3 118 15-155 150-267 (500)
122 cd03233 ABC_PDR_domain1 The pl 99.6 1.7E-15 3.6E-20 134.9 5.6 165 13-202 22-200 (202)
123 PRK10895 lipopolysaccharide AB 99.6 1.5E-15 3.2E-20 138.8 5.3 172 14-205 19-220 (241)
124 TIGR02211 LolD_lipo_ex lipopro 99.6 3.3E-16 7.3E-21 141.1 1.0 169 13-201 20-220 (221)
125 TIGR02769 nickel_nikE nickel i 99.6 7.3E-16 1.6E-20 142.9 3.1 174 13-205 26-234 (265)
126 PRK10253 iron-enterobactin tra 99.6 4.1E-16 8.9E-21 144.6 1.4 173 14-205 23-227 (265)
127 PRK14250 phosphate ABC transpo 99.6 5.1E-16 1.1E-20 142.0 1.8 173 13-204 18-214 (241)
128 PRK13647 cbiO cobalt transport 99.6 3.1E-16 6.6E-21 146.2 0.4 174 12-205 19-221 (274)
129 COG2884 FtsE Predicted ATPase 99.6 1.8E-15 4E-20 129.7 5.0 176 6-203 11-218 (223)
130 PRK13641 cbiO cobalt transport 99.6 1.9E-16 4.2E-21 148.5 -1.2 173 13-205 22-228 (287)
131 cd03295 ABC_OpuCA_Osmoprotecti 99.6 3.6E-16 7.7E-21 143.0 0.6 172 14-204 17-218 (242)
132 TIGR03873 F420-0_ABC_ATP propo 99.6 7.3E-16 1.6E-20 142.2 2.6 173 13-205 16-220 (256)
133 PRK13634 cbiO cobalt transport 99.6 2E-16 4.4E-21 148.5 -1.1 173 13-205 22-229 (290)
134 cd03292 ABC_FtsE_transporter F 99.6 6.5E-16 1.4E-20 138.5 2.1 167 13-199 16-213 (214)
135 TIGR03740 galliderm_ABC gallid 99.6 1.9E-15 4.2E-20 136.4 5.1 174 13-206 15-208 (223)
136 cd03267 ABC_NatA_like Similar 99.6 5.2E-16 1.1E-20 141.5 1.2 171 13-202 36-234 (236)
137 cd03216 ABC_Carb_Monos_I This 99.6 6.1E-15 1.3E-19 126.9 7.8 146 13-201 15-161 (163)
138 PRK11248 tauB taurine transpor 99.6 5.2E-16 1.1E-20 143.1 1.1 172 13-203 16-212 (255)
139 PRK10584 putative ABC transpor 99.6 4.9E-16 1.1E-20 140.7 0.9 169 13-201 25-225 (228)
140 PRK00089 era GTPase Era; Revie 99.6 1.3E-15 2.9E-20 143.0 3.9 195 24-237 5-219 (292)
141 PRK13646 cbiO cobalt transport 99.6 2.4E-16 5.3E-21 147.7 -1.2 175 12-205 21-229 (286)
142 cd03297 ABC_ModC_molybdenum_tr 99.6 9.1E-16 2E-20 137.7 2.5 167 16-202 16-212 (214)
143 PRK13643 cbiO cobalt transport 99.6 4.6E-16 9.9E-21 146.0 0.6 173 13-206 21-228 (288)
144 cd03230 ABC_DR_subfamily_A Thi 99.6 1.5E-15 3.2E-20 131.9 3.5 150 13-199 15-172 (173)
145 PRK11264 putative amino-acid A 99.6 1.5E-15 3.3E-20 139.4 3.8 173 13-205 18-227 (250)
146 PRK10619 histidine/lysine/argi 99.6 1.1E-15 2.4E-20 141.0 2.8 172 14-205 21-235 (257)
147 PRK11629 lolD lipoprotein tran 99.6 4.5E-16 9.6E-21 141.6 0.1 172 13-204 24-227 (233)
148 PRK13650 cbiO cobalt transport 99.6 4.2E-16 9.1E-21 145.6 -0.3 173 13-205 22-223 (279)
149 cd03228 ABCC_MRP_Like The MRP 99.6 2.2E-15 4.7E-20 130.6 4.2 146 13-198 17-170 (171)
150 PRK11124 artP arginine transpo 99.6 5.9E-15 1.3E-19 134.9 7.3 173 13-205 17-224 (242)
151 cd03300 ABC_PotA_N PotA is an 99.6 5.9E-16 1.3E-20 140.7 0.6 173 13-204 15-213 (232)
152 cd03213 ABCG_EPDR ABCG transpo 99.6 3.3E-15 7.2E-20 132.1 5.2 160 12-201 23-191 (194)
153 PRK12299 obgE GTPase CgtA; Rev 99.6 5.6E-15 1.2E-19 141.0 7.0 98 16-129 150-247 (335)
154 TIGR00972 3a0107s01c2 phosphat 99.6 1.6E-15 3.4E-20 139.2 3.0 171 13-205 16-226 (247)
155 PRK15112 antimicrobial peptide 99.5 1.9E-15 4.2E-20 140.3 3.1 174 13-205 28-233 (267)
156 cd03246 ABCC_Protease_Secretio 99.5 3.4E-15 7.3E-20 129.7 4.4 148 13-199 17-172 (173)
157 PRK15079 oligopeptide ABC tran 99.5 5.9E-16 1.3E-20 147.8 -0.3 174 13-205 36-245 (331)
158 PRK09984 phosphonate/organopho 99.5 1.6E-15 3.6E-20 140.3 2.6 175 13-206 19-237 (262)
159 COG1122 CbiO ABC-type cobalt t 99.5 1.9E-15 4.1E-20 136.9 2.8 175 12-205 18-222 (235)
160 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.5 1.4E-15 3.1E-20 137.5 1.9 166 13-202 37-222 (224)
161 PRK13639 cbiO cobalt transport 99.5 6.2E-16 1.3E-20 144.2 -0.6 173 13-205 17-220 (275)
162 PRK13635 cbiO cobalt transport 99.5 8.5E-16 1.8E-20 143.5 0.2 173 13-205 22-223 (279)
163 PRK13547 hmuV hemin importer A 99.5 1.7E-15 3.7E-20 140.9 2.2 173 14-205 17-238 (272)
164 TIGR02770 nickel_nikD nickel i 99.5 2.3E-15 5E-20 136.7 2.8 172 15-205 3-209 (230)
165 cd03222 ABC_RNaseL_inhibitor T 99.5 2.7E-15 5.8E-20 130.6 3.1 130 19-200 20-150 (177)
166 PRK10762 D-ribose transporter 99.5 5.3E-15 1.2E-19 149.1 5.7 172 14-205 20-224 (501)
167 cd03247 ABCC_cytochrome_bd The 99.5 5.5E-15 1.2E-19 128.9 5.1 152 13-201 17-175 (178)
168 PRK15439 autoinducer 2 ABC tra 99.5 1.5E-15 3.3E-20 153.4 1.6 173 14-206 27-224 (510)
169 PRK13649 cbiO cobalt transport 99.5 8.6E-16 1.9E-20 143.6 -0.1 173 13-205 22-228 (280)
170 TIGR00968 3a0106s01 sulfate AB 99.5 2.9E-15 6.3E-20 136.6 3.2 174 13-205 15-214 (237)
171 cd03251 ABCC_MsbA MsbA is an e 99.5 2.8E-15 6.1E-20 136.2 3.1 170 13-204 17-218 (234)
172 PRK14247 phosphate ABC transpo 99.5 2.9E-15 6.3E-20 137.6 3.1 177 13-205 18-228 (250)
173 PRK12297 obgE GTPase CgtA; Rev 99.5 1.3E-14 2.7E-19 142.1 7.7 89 25-129 159-247 (424)
174 PRK13638 cbiO cobalt transport 99.5 4.4E-15 9.5E-20 138.2 4.3 173 13-205 16-219 (271)
175 PRK13651 cobalt transporter AT 99.5 1.4E-15 2.9E-20 143.8 0.8 173 13-206 22-249 (305)
176 PRK14242 phosphate transporter 99.5 2.9E-15 6.2E-20 137.9 2.9 177 13-205 21-231 (253)
177 PRK14267 phosphate ABC transpo 99.5 3.2E-15 6.9E-20 137.6 3.0 172 13-205 19-231 (253)
178 PRK13645 cbiO cobalt transport 99.5 1.1E-15 2.5E-20 143.4 -0.0 174 13-205 26-234 (289)
179 cd03299 ABC_ModC_like Archeal 99.5 3.2E-15 6.9E-20 136.2 2.8 173 14-205 15-213 (235)
180 PRK15177 Vi polysaccharide exp 99.5 5.9E-15 1.3E-19 132.5 4.3 167 15-207 4-188 (213)
181 PRK03695 vitamin B12-transport 99.5 5.4E-15 1.2E-19 135.8 4.1 171 14-205 12-216 (248)
182 PRK11701 phnK phosphonate C-P 99.5 3.9E-15 8.3E-20 137.5 3.1 174 13-205 21-235 (258)
183 TIGR03771 anch_rpt_ABC anchore 99.5 4.3E-15 9.2E-20 134.3 3.3 165 20-205 2-195 (223)
184 cd03232 ABC_PDR_domain2 The pl 99.5 5.8E-15 1.3E-19 130.4 4.0 162 13-202 22-190 (192)
185 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.5 2E-14 4.3E-19 121.2 7.1 130 12-199 14-144 (144)
186 COG1119 ModF ABC-type molybden 99.5 1.8E-14 3.8E-19 128.5 7.0 172 15-204 48-255 (257)
187 cd03234 ABCG_White The White s 99.5 9.7E-15 2.1E-19 132.1 5.5 171 12-202 21-224 (226)
188 PRK14273 phosphate ABC transpo 99.5 3.8E-15 8.2E-20 137.2 2.8 172 13-205 22-232 (254)
189 PRK13644 cbiO cobalt transport 99.5 3.6E-15 7.7E-20 139.0 2.6 172 13-205 17-218 (274)
190 PRK13632 cbiO cobalt transport 99.5 1.1E-15 2.5E-20 142.1 -0.8 174 12-205 23-225 (271)
191 PRK14270 phosphate ABC transpo 99.5 4.7E-15 1E-19 136.4 3.3 177 13-205 19-229 (251)
192 TIGR02982 heterocyst_DevA ABC 99.5 2.4E-15 5.1E-20 135.6 1.3 168 13-200 20-219 (220)
193 cd03245 ABCC_bacteriocin_expor 99.5 5.9E-15 1.3E-19 132.9 3.8 166 13-201 19-217 (220)
194 PRK09700 D-allose transporter 99.5 4.2E-15 9.1E-20 150.2 3.1 174 13-206 20-229 (510)
195 PRK13633 cobalt transporter AT 99.5 1.5E-15 3.2E-20 142.0 -0.3 174 12-205 24-227 (280)
196 cd03244 ABCC_MRP_domain2 Domai 99.5 7.5E-15 1.6E-19 132.3 4.4 168 12-203 18-218 (221)
197 PRK14268 phosphate ABC transpo 99.5 5.6E-15 1.2E-19 136.4 3.4 172 13-205 27-236 (258)
198 cd03254 ABCC_Glucan_exporter_l 99.5 5.3E-15 1.2E-19 134.0 3.1 170 13-204 18-219 (229)
199 PRK13631 cbiO cobalt transport 99.5 1.4E-15 3.1E-20 144.6 -0.8 173 13-205 41-259 (320)
200 PRK14269 phosphate ABC transpo 99.5 6.9E-15 1.5E-19 134.9 3.7 175 13-205 17-224 (246)
201 PRK10744 pstB phosphate transp 99.5 6.1E-15 1.3E-19 136.3 3.4 176 14-205 29-238 (260)
202 cd03217 ABC_FeS_Assembly ABC-t 99.5 8.1E-15 1.8E-19 130.3 4.0 162 13-204 15-187 (200)
203 TIGR01978 sufC FeS assembly AT 99.5 4.5E-15 9.7E-20 135.6 2.4 174 14-205 16-228 (243)
204 cd03252 ABCC_Hemolysin The ABC 99.5 6.5E-15 1.4E-19 134.2 3.4 171 13-205 17-219 (237)
205 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.5 6.8E-15 1.5E-19 134.1 3.5 171 13-205 18-220 (238)
206 PRK15056 manganese/iron transp 99.5 5.7E-15 1.2E-19 137.5 2.9 171 14-205 23-224 (272)
207 PRK10418 nikD nickel transport 99.5 4.1E-15 8.8E-20 137.0 1.9 174 13-205 18-224 (254)
208 PRK11308 dppF dipeptide transp 99.5 4.9E-15 1.1E-19 141.3 2.5 174 13-205 30-238 (327)
209 PRK10419 nikE nickel transport 99.5 6.7E-15 1.4E-19 136.7 3.2 174 13-205 27-235 (268)
210 cd04938 TGS_Obg-like TGS_Obg-l 99.5 1E-14 2.3E-19 108.6 3.5 45 304-348 1-56 (76)
211 PRK13640 cbiO cobalt transport 99.5 1.8E-15 3.9E-20 141.6 -0.8 174 12-205 21-226 (282)
212 PRK13648 cbiO cobalt transport 99.5 1.8E-15 3.9E-20 140.6 -0.8 173 13-205 24-225 (269)
213 PRK13546 teichoic acids export 99.5 1.4E-14 3E-19 134.3 5.0 166 15-205 41-226 (264)
214 cd03253 ABCC_ATM1_transporter 99.5 7.5E-15 1.6E-19 133.6 3.1 169 14-204 17-217 (236)
215 TIGR02323 CP_lyasePhnK phospho 99.5 1.1E-14 2.5E-19 133.9 4.3 173 14-205 19-232 (253)
216 PRK09473 oppD oligopeptide tra 99.5 4.1E-15 9E-20 142.0 1.4 174 13-205 31-245 (330)
217 PRK14251 phosphate ABC transpo 99.5 9.3E-15 2E-19 134.3 3.6 177 13-205 19-229 (251)
218 PRK10982 galactose/methyl gala 99.5 1.5E-14 3.2E-19 145.6 5.4 172 14-205 14-217 (491)
219 PRK13538 cytochrome c biogenes 99.5 3.6E-14 7.8E-19 126.5 7.3 133 14-160 17-173 (204)
220 PRK14235 phosphate transporter 99.5 7.7E-15 1.7E-19 136.2 3.1 174 15-205 36-245 (267)
221 PRK13540 cytochrome c biogenes 99.5 4.4E-14 9.5E-19 125.5 7.6 134 12-159 15-170 (200)
222 COG1123 ATPase components of v 99.5 2.1E-14 4.5E-19 142.2 5.8 177 10-205 303-513 (539)
223 PRK14256 phosphate ABC transpo 99.5 2E-14 4.2E-19 132.3 5.3 177 13-205 19-230 (252)
224 PRK14248 phosphate ABC transpo 99.5 1.2E-14 2.7E-19 134.9 4.0 176 14-205 37-246 (268)
225 PRK13549 xylose transporter AT 99.5 8.4E-15 1.8E-19 147.9 3.1 174 13-206 20-227 (506)
226 cd03237 ABC_RNaseL_inhibitor_d 99.5 6.5E-15 1.4E-19 135.1 2.1 157 18-197 19-191 (246)
227 PRK14262 phosphate ABC transpo 99.5 1.3E-14 2.9E-19 133.2 4.0 178 12-205 17-228 (250)
228 COG4608 AppF ABC-type oligopep 99.5 8.5E-15 1.8E-19 132.9 2.7 162 12-205 27-193 (268)
229 COG4525 TauB ABC-type taurine 99.5 1.6E-14 3.4E-19 124.5 4.1 164 13-196 20-207 (259)
230 TIGR01166 cbiO cobalt transpor 99.5 3.8E-14 8.2E-19 124.8 6.7 134 13-160 7-171 (190)
231 PRK13549 xylose transporter AT 99.5 7E-15 1.5E-19 148.4 2.3 174 13-206 277-489 (506)
232 PRK13541 cytochrome c biogenes 99.5 5E-14 1.1E-18 124.7 7.4 129 17-159 19-166 (195)
233 PRK11022 dppD dipeptide transp 99.5 7.3E-15 1.6E-19 140.1 2.3 178 13-205 22-237 (326)
234 PRK13543 cytochrome c biogenes 99.5 3.2E-14 6.9E-19 127.8 6.2 160 13-191 26-207 (214)
235 PRK11288 araG L-arabinose tran 99.5 6.1E-15 1.3E-19 148.7 1.7 172 15-206 270-480 (501)
236 PRK14259 phosphate ABC transpo 99.5 1.5E-14 3.2E-19 134.5 4.1 167 14-197 29-228 (269)
237 PRK13539 cytochrome c biogenes 99.5 7E-14 1.5E-18 124.9 8.2 133 14-160 18-171 (207)
238 COG0488 Uup ATPase components 99.5 2.6E-14 5.6E-19 143.3 5.9 160 15-208 20-237 (530)
239 PRK13642 cbiO cobalt transport 99.5 2.9E-15 6.2E-20 139.8 -0.9 173 13-205 22-223 (277)
240 PRK14241 phosphate transporter 99.5 1.2E-14 2.6E-19 134.2 3.2 177 13-205 19-236 (258)
241 PRK14238 phosphate transporter 99.5 1.2E-14 2.5E-19 135.3 3.0 177 13-205 39-249 (271)
242 TIGR01189 ccmA heme ABC export 99.5 6.9E-14 1.5E-18 124.0 7.7 132 14-159 16-170 (198)
243 PRK14237 phosphate transporter 99.5 1E-14 2.2E-19 135.4 2.5 178 12-205 34-245 (267)
244 TIGR01257 rim_protein retinal- 99.5 9.1E-15 2E-19 164.2 2.2 174 13-206 1954-2154(2272)
245 cd03231 ABC_CcmA_heme_exporter 99.5 8.4E-14 1.8E-18 123.8 7.9 158 14-191 16-195 (201)
246 TIGR02729 Obg_CgtA Obg family 99.5 6.3E-14 1.4E-18 133.6 7.5 93 21-129 154-246 (329)
247 PRK13545 tagH teichoic acids e 99.5 1.5E-14 3.2E-19 143.7 3.3 167 14-205 40-226 (549)
248 PRK14275 phosphate ABC transpo 99.5 2E-14 4.3E-19 134.8 3.9 173 15-205 56-264 (286)
249 PRK09700 D-allose transporter 99.5 7.6E-15 1.7E-19 148.3 1.2 170 14-203 279-490 (510)
250 PRK14240 phosphate transporter 99.5 1.6E-14 3.4E-19 132.8 3.1 177 13-205 18-228 (250)
251 PRK14239 phosphate transporter 99.5 2E-14 4.3E-19 132.2 3.8 174 13-205 20-230 (252)
252 PRK10938 putative molybdenum t 99.5 1.8E-14 4E-19 144.9 3.9 170 13-205 18-218 (490)
253 PRK10261 glutathione transport 99.5 1.1E-14 2.3E-19 150.5 2.2 173 14-205 340-547 (623)
254 COG2274 SunT ABC-type bacterio 99.5 2.5E-14 5.4E-19 147.9 4.9 166 14-205 489-690 (709)
255 PRK14253 phosphate ABC transpo 99.5 2.7E-14 5.8E-19 131.1 4.5 178 12-205 17-227 (249)
256 cd03248 ABCC_TAP TAP, the Tran 99.5 1.2E-14 2.6E-19 131.4 2.2 166 12-199 28-225 (226)
257 PRK14272 phosphate ABC transpo 99.5 1.6E-14 3.4E-19 132.8 3.0 173 12-205 18-230 (252)
258 COG1101 PhnK ABC-type uncharac 99.5 2E-14 4.3E-19 125.6 3.2 173 12-203 20-230 (263)
259 PRK14257 phosphate ABC transpo 99.5 1.3E-14 2.8E-19 138.5 2.3 177 13-205 97-307 (329)
260 PLN03211 ABC transporter G-25; 99.5 5.6E-14 1.2E-18 145.5 7.1 193 15-232 85-312 (659)
261 TIGR03608 L_ocin_972_ABC putat 99.5 5.8E-14 1.3E-18 125.1 6.2 133 13-159 13-177 (206)
262 PRK14263 phosphate ABC transpo 99.5 1.8E-14 3.8E-19 133.4 3.0 177 13-205 23-239 (261)
263 PRK14274 phosphate ABC transpo 99.5 1.6E-14 3.5E-19 133.4 2.7 171 13-205 27-237 (259)
264 TIGR03797 NHPM_micro_ABC2 NHPM 99.5 1.7E-14 3.7E-19 150.7 3.1 165 12-205 467-667 (686)
265 PRK14243 phosphate transporter 99.5 2.7E-14 5.8E-19 132.4 3.9 177 13-205 25-242 (264)
266 PRK15093 antimicrobial peptide 99.5 1.1E-14 2.3E-19 139.3 1.2 178 13-205 22-242 (330)
267 PRK14244 phosphate ABC transpo 99.5 1.8E-14 3.8E-19 132.5 2.6 176 13-205 20-231 (251)
268 PRK11147 ABC transporter ATPas 99.5 1.9E-14 4.2E-19 148.9 3.1 168 15-209 336-526 (635)
269 PRK14249 phosphate ABC transpo 99.5 2.6E-14 5.5E-19 131.4 3.6 172 13-205 19-229 (251)
270 PRK10261 glutathione transport 99.5 8.4E-15 1.8E-19 151.2 0.3 175 12-205 30-252 (623)
271 PRK15439 autoinducer 2 ABC tra 99.5 1E-14 2.2E-19 147.4 0.9 170 15-204 280-485 (510)
272 PRK15134 microcin C ABC transp 99.5 1E-14 2.2E-19 148.0 0.8 173 13-205 301-509 (529)
273 PRK11176 lipid transporter ATP 99.5 3E-14 6.5E-19 146.2 4.0 168 13-205 358-561 (582)
274 PRK10762 D-ribose transporter 99.5 1.2E-14 2.6E-19 146.6 1.0 172 14-205 268-478 (501)
275 PRK09544 znuC high-affinity zi 99.5 1.6E-14 3.5E-19 132.9 1.8 166 14-205 20-203 (251)
276 COG4148 ModC ABC-type molybdat 99.5 4.6E-14 1E-18 127.7 4.6 169 17-206 17-213 (352)
277 TIGR03796 NHPM_micro_ABC1 NHPM 99.5 2.2E-14 4.7E-19 150.5 2.8 166 13-206 494-695 (710)
278 PRK14254 phosphate ABC transpo 99.5 3.7E-14 8.1E-19 132.9 4.1 176 14-205 55-263 (285)
279 PRK15064 ABC transporter ATP-b 99.5 2E-14 4.2E-19 146.0 2.3 166 15-205 336-519 (530)
280 PRK14258 phosphate ABC transpo 99.5 1.2E-14 2.5E-19 134.5 0.5 173 14-205 23-239 (261)
281 PRK14261 phosphate ABC transpo 99.5 5.7E-14 1.2E-18 129.3 5.0 177 13-205 21-231 (253)
282 PRK14245 phosphate ABC transpo 99.5 2.4E-14 5.1E-19 131.6 2.5 174 14-205 19-228 (250)
283 PRK11174 cysteine/glutathione 99.4 2.8E-14 6E-19 146.7 3.2 165 14-205 366-566 (588)
284 PRK14271 phosphate ABC transpo 99.4 3.3E-14 7.2E-19 132.6 3.3 176 14-205 37-245 (276)
285 cd03250 ABCC_MRP_domain1 Domai 99.4 5E-14 1.1E-18 125.5 3.8 47 13-70 20-66 (204)
286 TIGR03269 met_CoM_red_A2 methy 99.4 2.3E-14 5E-19 145.1 1.9 173 14-205 300-511 (520)
287 COG4988 CydD ABC-type transpor 99.4 7.3E-14 1.6E-18 138.0 5.3 171 12-206 335-538 (559)
288 TIGR03269 met_CoM_red_A2 methy 99.4 2E-14 4.4E-19 145.6 1.2 177 13-206 15-253 (520)
289 PRK14265 phosphate ABC transpo 99.4 5.3E-14 1.2E-18 131.1 3.9 177 13-205 35-252 (274)
290 PRK10247 putative ABC transpor 99.4 2.4E-13 5.2E-18 123.0 8.0 164 12-195 21-210 (225)
291 PRK11288 araG L-arabinose tran 99.4 2.8E-14 6E-19 144.0 2.0 170 14-203 20-221 (501)
292 TIGR02633 xylG D-xylose ABC tr 99.4 1E-13 2.3E-18 139.7 6.2 170 14-203 276-484 (500)
293 cd03369 ABCC_NFT1 Domain 2 of 99.4 1.1E-13 2.4E-18 123.5 5.7 165 12-203 22-204 (207)
294 PRK14252 phosphate ABC transpo 99.4 5.5E-14 1.2E-18 130.3 3.6 177 13-205 31-243 (265)
295 cd03223 ABCD_peroxisomal_ALDP 99.4 5E-13 1.1E-17 115.3 9.3 144 14-196 17-161 (166)
296 TIGR02633 xylG D-xylose ABC tr 99.4 4.6E-14 9.9E-19 142.3 3.0 173 13-205 16-224 (500)
297 PRK14264 phosphate ABC transpo 99.4 6.6E-14 1.4E-18 132.4 3.8 178 13-205 60-283 (305)
298 PRK14246 phosphate ABC transpo 99.4 9.3E-14 2E-18 128.3 4.7 172 13-205 25-235 (257)
299 TIGR03375 type_I_sec_LssB type 99.4 5.2E-14 1.1E-18 147.3 3.3 167 13-205 480-682 (694)
300 PRK14260 phosphate ABC transpo 99.4 6.8E-14 1.5E-18 129.3 3.6 172 13-205 22-237 (259)
301 PRK14266 phosphate ABC transpo 99.4 5.3E-14 1.1E-18 129.2 2.8 178 12-205 17-228 (250)
302 PRK09580 sufC cysteine desulfu 99.4 5.2E-14 1.1E-18 129.0 2.7 176 13-206 16-230 (248)
303 PRK14236 phosphate transporter 99.4 1E-13 2.3E-18 129.0 4.7 174 15-205 42-250 (272)
304 cd03288 ABCC_SUR2 The SUR doma 99.4 5.9E-14 1.3E-18 129.6 3.0 170 13-205 36-237 (257)
305 COG1132 MdlB ABC-type multidru 99.4 4.6E-14 1E-18 144.4 2.5 168 13-206 344-547 (567)
306 PRK14255 phosphate ABC transpo 99.4 1E-13 2.2E-18 127.5 4.5 173 13-204 20-229 (252)
307 COG4987 CydC ABC-type transpor 99.4 1.3E-13 2.9E-18 134.6 5.2 166 13-206 353-556 (573)
308 PRK10790 putative multidrug tr 99.4 7.1E-14 1.5E-18 143.8 3.4 165 13-206 356-558 (592)
309 TIGR01193 bacteriocin_ABC ABC- 99.4 8.1E-14 1.7E-18 146.2 3.8 166 13-205 489-691 (708)
310 TIGR01846 type_I_sec_HlyB type 99.4 7.4E-14 1.6E-18 146.1 3.4 166 14-205 473-674 (694)
311 PRK10636 putative ABC transpor 99.4 4.3E-14 9.4E-19 146.2 1.6 167 15-207 329-513 (638)
312 TIGR02203 MsbA_lipidA lipid A 99.4 1.1E-13 2.4E-18 141.7 4.5 170 14-205 348-550 (571)
313 PRK15134 microcin C ABC transp 99.4 8.3E-14 1.8E-18 141.4 3.6 174 12-204 23-239 (529)
314 cd03289 ABCC_CFTR2 The CFTR su 99.4 6.5E-14 1.4E-18 130.4 2.5 170 13-206 19-220 (275)
315 PRK11819 putative ABC transpor 99.4 1E-13 2.3E-18 141.4 4.1 168 13-207 22-246 (556)
316 cd03236 ABC_RNaseL_inhibitor_d 99.4 8.4E-14 1.8E-18 128.3 3.0 167 14-202 17-218 (255)
317 PRK10636 putative ABC transpor 99.4 9.5E-14 2.1E-18 143.7 3.7 172 14-208 17-233 (638)
318 COG4619 ABC-type uncharacteriz 99.4 1.1E-12 2.5E-17 110.5 9.3 134 6-155 11-172 (223)
319 TIGR00958 3a01208 Conjugate Tr 99.4 4.3E-14 9.4E-19 148.1 1.0 164 14-205 497-696 (711)
320 TIGR02868 CydC thiol reductant 99.4 4.6E-13 1E-17 136.0 8.3 129 15-158 352-512 (529)
321 TIGR01257 rim_protein retinal- 99.4 7.9E-14 1.7E-18 156.8 2.8 171 14-205 946-1143(2272)
322 PRK15064 ABC transporter ATP-b 99.4 5.6E-14 1.2E-18 142.7 1.4 168 13-207 16-238 (530)
323 CHL00131 ycf16 sulfate ABC tra 99.4 8.2E-14 1.8E-18 128.1 2.2 175 13-205 22-235 (252)
324 TIGR02324 CP_lyasePhnL phospho 99.4 3.9E-13 8.4E-18 121.4 6.6 160 13-191 23-219 (224)
325 PRK13409 putative ATPase RIL; 99.4 6.2E-14 1.3E-18 143.4 1.5 167 15-207 356-538 (590)
326 cd03290 ABCC_SUR1_N The SUR do 99.4 1.4E-13 3.1E-18 123.8 3.7 163 13-198 16-217 (218)
327 TIGR01192 chvA glucan exporter 99.4 9.5E-14 2.1E-18 142.5 2.8 170 14-205 351-552 (585)
328 PRK11160 cysteine/glutathione 99.4 1E-13 2.2E-18 142.0 3.0 170 13-205 355-556 (574)
329 PRK13657 cyclic beta-1,2-gluca 99.4 1.6E-13 3.4E-18 141.1 4.4 170 13-205 350-552 (588)
330 cd00267 ABC_ATPase ABC (ATP-bi 99.4 1.7E-13 3.8E-18 116.9 3.8 142 13-198 14-156 (157)
331 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 1.6E-13 3.4E-18 140.0 4.2 166 15-206 339-526 (552)
332 TIGR00955 3a01204 The Eye Pigm 99.4 5.6E-13 1.2E-17 137.6 8.0 176 12-207 39-252 (617)
333 PRK11819 putative ABC transpor 99.4 1.2E-13 2.6E-18 141.0 2.9 164 15-206 341-528 (556)
334 PRK10982 galactose/methyl gala 99.4 2.1E-13 4.5E-18 137.3 4.5 170 14-203 264-472 (491)
335 PRK10789 putative multidrug tr 99.4 1.4E-13 3E-18 140.9 3.2 167 13-205 330-532 (569)
336 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 1.8E-13 4E-18 139.6 3.9 168 13-207 20-244 (552)
337 KOG0055 Multidrug/pheromone ex 99.4 1E-13 2.2E-18 147.0 1.9 165 15-205 370-570 (1228)
338 TIGR02204 MsbA_rel ABC transpo 99.4 2E-13 4.3E-18 140.0 3.4 165 15-205 357-557 (576)
339 cd03291 ABCC_CFTR1 The CFTR su 99.4 1.9E-13 4.2E-18 127.7 3.0 165 13-205 52-241 (282)
340 TIGR01187 potA spermidine/putr 99.4 4.8E-14 1E-18 134.5 -1.2 158 29-205 1-184 (325)
341 TIGR01842 type_I_sec_PrtD type 99.4 5.9E-13 1.3E-17 135.6 6.6 168 13-205 333-536 (544)
342 COG4181 Predicted ABC-type tra 99.4 5.9E-13 1.3E-17 112.6 4.9 166 15-201 27-225 (228)
343 COG4138 BtuD ABC-type cobalami 99.4 1.6E-12 3.4E-17 110.3 7.1 172 13-205 14-215 (248)
344 PRK11147 ABC transporter ATPas 99.3 3.3E-13 7.2E-18 139.8 3.3 167 14-207 19-239 (635)
345 COG0444 DppD ABC-type dipeptid 99.3 2.5E-13 5.5E-18 125.9 1.1 181 12-206 19-238 (316)
346 TIGR02857 CydD thiol reductant 99.3 1.9E-12 4.2E-17 131.4 7.6 132 13-158 337-500 (529)
347 PLN03232 ABC transporter C fam 99.3 1.2E-12 2.7E-17 146.6 6.3 167 13-206 1251-1453(1495)
348 COG4167 SapF ABC-type antimicr 99.3 2.2E-12 4.7E-17 110.3 6.3 174 13-205 28-233 (267)
349 PLN03073 ABC transporter F fam 99.3 5.1E-13 1.1E-17 139.3 3.0 163 15-206 526-709 (718)
350 COG4674 Uncharacterized ABC-ty 99.3 6.1E-13 1.3E-17 114.7 2.8 173 13-207 20-231 (249)
351 COG1160 Predicted GTPases [Gen 99.3 6.3E-13 1.4E-17 128.1 2.5 87 25-128 4-93 (444)
352 PLN03130 ABC transporter C fam 99.3 2.3E-12 5.1E-17 144.8 7.0 166 13-205 1254-1455(1622)
353 cd03238 ABC_UvrA The excision 99.3 1.4E-12 3.1E-17 113.4 4.0 150 13-200 10-166 (176)
354 PRK10938 putative molybdenum t 99.3 2.9E-13 6.4E-18 136.1 -0.5 170 15-203 277-484 (490)
355 PRK13409 putative ATPase RIL; 99.3 7.9E-13 1.7E-17 135.4 2.7 157 15-197 91-286 (590)
356 PRK10535 macrolide transporter 99.3 8.2E-13 1.8E-17 137.1 2.0 173 13-206 23-227 (648)
357 PF00005 ABC_tran: ABC transpo 99.3 7.9E-13 1.7E-17 109.9 1.5 49 16-75 3-51 (137)
358 TIGR00956 3a01205 Pleiotropic 99.3 2.7E-12 5.9E-17 142.7 5.9 199 15-231 780-1013(1394)
359 KOG0061 Transporter, ABC super 99.3 5.8E-12 1.2E-16 129.4 7.8 191 15-233 47-277 (613)
360 cd01898 Obg Obg subfamily. Th 99.3 3.1E-12 6.7E-17 109.6 4.8 87 26-128 2-88 (170)
361 KOG1423 Ras-like GTPase ERA [C 99.3 4.5E-12 9.8E-17 115.9 6.0 196 24-237 72-319 (379)
362 KOG0059 Lipid exporter ABCA1 a 99.3 2.3E-12 5E-17 137.7 4.7 173 13-206 580-782 (885)
363 PRK10522 multidrug transporter 99.3 8.5E-13 1.8E-17 134.6 1.3 164 13-203 338-530 (547)
364 COG0488 Uup ATPase components 99.3 9.3E-13 2E-17 132.2 1.4 157 15-207 339-521 (530)
365 TIGR00956 3a01205 Pleiotropic 99.3 3.6E-12 7.9E-17 141.7 6.0 178 15-207 78-296 (1394)
366 TIGR01194 cyc_pep_trnsptr cycl 99.3 1.5E-12 3.3E-17 132.9 2.6 160 15-201 359-549 (555)
367 PLN03140 ABC transporter G fam 99.3 1.7E-12 3.8E-17 144.2 3.1 173 15-206 182-422 (1470)
368 KOG0057 Mitochondrial Fe/S clu 99.3 6.7E-12 1.5E-16 122.9 6.4 165 15-206 369-569 (591)
369 TIGR00957 MRP_assoc_pro multi 99.3 6.2E-12 1.3E-16 141.2 7.0 165 13-206 1301-1503(1522)
370 COG1123 ATPase components of v 99.3 3E-12 6.6E-17 126.9 3.9 174 12-207 23-240 (539)
371 COG0486 ThdF Predicted GTPase 99.3 2.5E-12 5.4E-17 124.3 3.2 94 20-130 213-308 (454)
372 COG4133 CcmA ABC-type transpor 99.2 1.9E-11 4.1E-16 105.0 8.0 48 15-73 19-66 (209)
373 KOG0058 Peptide exporter, ABC 99.2 1.4E-11 3E-16 124.4 8.2 166 14-205 484-685 (716)
374 PTZ00243 ABC transporter; Prov 99.2 7.1E-12 1.5E-16 140.7 6.3 166 14-206 1326-1528(1560)
375 COG4172 ABC-type uncharacteriz 99.2 9E-12 2E-16 118.0 5.8 174 13-206 302-511 (534)
376 COG0370 FeoB Fe2+ transport sy 99.2 5.8E-12 1.3E-16 126.6 4.3 145 26-198 5-166 (653)
377 PF01926 MMR_HSR1: 50S ribosom 99.2 2E-12 4.4E-17 104.4 0.9 61 26-103 1-62 (116)
378 PTZ00265 multidrug resistance 99.2 2.5E-12 5.5E-17 143.3 1.9 180 13-205 1183-1446(1466)
379 cd01881 Obg_like The Obg-like 99.2 7.6E-12 1.7E-16 107.6 3.0 84 29-129 1-85 (176)
380 PLN03140 ABC transporter G fam 99.2 1E-11 2.2E-16 138.2 4.7 176 15-208 897-1107(1470)
381 COG4598 HisP ABC-type histidin 99.2 9.5E-11 2.1E-15 100.1 8.5 169 15-204 23-234 (256)
382 COG1084 Predicted GTPase [Gene 99.2 3.4E-11 7.3E-16 111.6 6.1 64 23-103 167-230 (346)
383 PTZ00265 multidrug resistance 99.2 1.5E-11 3.2E-16 137.2 3.5 50 13-73 400-450 (1466)
384 PLN03073 ABC transporter F fam 99.2 1.4E-11 2.9E-16 128.7 2.9 73 123-207 353-427 (718)
385 COG0396 sufC Cysteine desulfur 99.1 1.9E-10 4.2E-15 101.8 9.0 52 15-75 21-72 (251)
386 TIGR01271 CFTR_protein cystic 99.1 4.6E-11 9.9E-16 134.0 6.4 165 13-205 1234-1434(1490)
387 COG4618 ArpD ABC-type protease 99.1 1E-10 2.2E-15 113.7 7.7 164 12-206 350-555 (580)
388 TIGR00957 MRP_assoc_pro multi 99.1 3.4E-11 7.3E-16 135.4 4.0 162 13-206 653-845 (1522)
389 TIGR01271 CFTR_protein cystic 99.1 7.9E-11 1.7E-15 132.1 6.3 164 14-206 442-631 (1490)
390 COG4107 PhnK ABC-type phosphon 99.1 4E-10 8.7E-15 95.8 8.7 170 15-203 23-233 (258)
391 TIGR03156 GTP_HflX GTP-binding 99.1 5.4E-11 1.2E-15 114.5 3.7 90 23-128 188-278 (351)
392 KOG0062 ATPase component of AB 99.1 5.3E-11 1.1E-15 115.8 3.4 74 123-208 207-282 (582)
393 COG4161 ArtP ABC-type arginine 99.1 6.1E-11 1.3E-15 99.5 2.7 169 16-205 20-224 (242)
394 TIGR00954 3a01203 Peroxysomal 99.1 2E-10 4.3E-15 119.5 7.1 46 14-70 468-513 (659)
395 KOG1191 Mitochondrial GTPase [ 99.1 9.1E-11 2E-15 113.6 3.6 93 19-128 263-358 (531)
396 cd01666 TGS_DRG_C TGS_DRG_C: 99.0 1E-10 2.2E-15 86.7 2.7 45 304-348 1-49 (75)
397 COG4136 ABC-type uncharacteriz 99.0 1.1E-09 2.4E-14 91.0 8.8 127 15-152 19-170 (213)
398 KOG0055 Multidrug/pheromone ex 99.0 3.8E-10 8.2E-15 120.3 6.8 165 15-205 1007-1207(1228)
399 COG2262 HflX GTPases [General 99.0 1.6E-10 3.5E-15 110.1 3.5 87 25-129 193-282 (411)
400 PRK11058 GTPase HflX; Provisio 99.0 1.3E-10 2.8E-15 114.5 2.8 86 25-128 198-286 (426)
401 PTZ00243 ABC transporter; Prov 99.0 4.6E-10 9.9E-15 126.3 6.8 164 15-207 677-866 (1560)
402 KOG0927 Predicted transporter 99.0 5.8E-10 1.2E-14 109.2 6.3 72 124-207 231-305 (614)
403 COG1160 Predicted GTPases [Gen 99.0 3.8E-10 8.1E-15 109.1 4.4 90 23-129 177-271 (444)
404 PLN03130 ABC transporter C fam 99.0 4.8E-10 1E-14 126.4 6.0 160 14-207 633-824 (1622)
405 COG4778 PhnL ABC-type phosphon 99.0 1.8E-09 3.9E-14 91.6 7.6 151 13-191 26-222 (235)
406 COG4615 PvdE ABC-type sideroph 98.9 2.6E-09 5.6E-14 101.3 8.7 48 15-73 340-387 (546)
407 KOG0056 Heavy metal exporter H 98.9 3.7E-09 8E-14 102.5 9.4 123 13-153 553-711 (790)
408 cd01669 TGS_Ygr210_C TGS_Ygr21 98.9 5.9E-10 1.3E-14 83.0 3.0 32 316-347 23-54 (76)
409 PLN03232 ABC transporter C fam 98.9 9.4E-10 2E-14 123.7 6.0 160 13-206 632-823 (1495)
410 PRK09554 feoB ferrous iron tra 98.9 1.9E-09 4.2E-14 113.2 6.8 88 25-129 4-96 (772)
411 KOG0927 Predicted transporter 98.9 2.9E-09 6.2E-14 104.5 6.2 168 16-207 408-592 (614)
412 TIGR00450 mnmE_trmE_thdF tRNA 98.8 1.1E-09 2.5E-14 108.4 2.7 93 20-129 199-293 (442)
413 cd04164 trmE TrmE (MnmE, ThdF, 98.8 1.5E-09 3.3E-14 91.1 2.9 61 24-101 1-62 (157)
414 cd01878 HflX HflX subfamily. 98.8 1.6E-09 3.4E-14 96.2 3.1 61 25-101 42-102 (204)
415 KOG0054 Multidrug resistance-a 98.8 1.4E-08 3E-13 110.6 10.1 161 14-205 1156-1356(1381)
416 KOG0054 Multidrug resistance-a 98.8 5.3E-09 1.2E-13 113.8 6.7 158 12-207 535-727 (1381)
417 PRK05291 trmE tRNA modificatio 98.8 2.5E-09 5.4E-14 106.4 3.8 93 20-129 211-305 (449)
418 KOG0065 Pleiotropic drug resis 98.8 7.8E-09 1.7E-13 110.7 7.5 185 15-218 808-1027(1391)
419 cd03280 ABC_MutS2 MutS2 homolo 98.8 1.9E-08 4.2E-13 89.3 8.8 144 15-203 18-171 (200)
420 cd03270 ABC_UvrA_I The excisio 98.8 1.3E-08 2.8E-13 92.2 7.1 34 12-45 9-43 (226)
421 TIGR03594 GTPase_EngA ribosome 98.8 2.7E-09 5.8E-14 105.6 2.9 87 26-129 1-89 (429)
422 cd01852 AIG1 AIG1 (avrRpt2-ind 98.8 5.1E-09 1.1E-13 92.6 3.7 60 26-102 2-63 (196)
423 COG4172 ABC-type uncharacteriz 98.8 1.7E-08 3.6E-13 96.2 7.1 178 12-204 24-240 (534)
424 KOG0066 eIF2-interacting prote 98.7 5.2E-09 1.1E-13 100.3 3.4 44 14-68 603-646 (807)
425 cd03278 ABC_SMC_barmotin Barmo 98.7 2E-08 4.4E-13 89.0 5.1 32 15-47 14-45 (197)
426 COG5265 ATM1 ABC-type transpor 98.7 5.3E-08 1.2E-12 93.2 8.0 55 12-77 277-331 (497)
427 PRK00093 GTP-binding protein D 98.7 1.1E-08 2.4E-13 101.4 3.1 87 26-129 3-91 (435)
428 cd04178 Nucleostemin_like Nucl 98.6 4.7E-08 1E-12 84.8 5.8 56 23-98 116-172 (172)
429 COG1245 Predicted ATPase, RNas 98.6 9.9E-09 2.1E-13 99.0 1.7 37 18-65 361-397 (591)
430 PRK03003 GTP-binding protein D 98.6 1.9E-08 4.1E-13 100.9 3.7 88 25-129 39-128 (472)
431 cd01879 FeoB Ferrous iron tran 98.6 8.3E-09 1.8E-13 86.9 0.9 56 29-101 1-56 (158)
432 cd01894 EngA1 EngA1 subfamily. 98.6 9.3E-09 2E-13 86.4 1.0 57 28-101 1-58 (157)
433 cd03279 ABC_sbcCD SbcCD and ot 98.6 2.7E-08 5.9E-13 89.2 3.9 59 131-198 151-209 (213)
434 COG4178 ABC-type uncharacteriz 98.6 6.8E-08 1.5E-12 97.5 7.0 45 14-69 409-453 (604)
435 cd01895 EngA2 EngA2 subfamily. 98.6 4.3E-08 9.4E-13 83.4 4.6 61 25-102 3-64 (174)
436 cd04163 Era Era subfamily. Er 98.6 2E-08 4.4E-13 84.6 2.4 61 24-101 3-64 (168)
437 cd03283 ABC_MutS-like MutS-lik 98.6 6.8E-08 1.5E-12 85.8 5.7 28 20-47 21-48 (199)
438 cd01858 NGP_1 NGP-1. Autoanti 98.6 9.1E-08 2E-12 81.5 6.2 56 23-98 101-157 (157)
439 cd01897 NOG NOG1 is a nucleola 98.6 9.1E-08 2E-12 81.7 6.1 58 26-100 2-59 (168)
440 PRK03003 GTP-binding protein D 98.6 3.7E-08 8.1E-13 98.7 3.5 87 24-129 211-304 (472)
441 cd01855 YqeH YqeH. YqeH is an 98.5 8.4E-08 1.8E-12 84.3 4.9 56 23-98 126-190 (190)
442 cd04171 SelB SelB subfamily. 98.5 3.5E-08 7.6E-13 83.6 2.2 58 25-98 1-61 (164)
443 PRK09518 bifunctional cytidyla 98.5 3.4E-08 7.5E-13 103.7 2.6 88 25-129 276-365 (712)
444 cd01849 YlqF_related_GTPase Yl 98.5 1.7E-07 3.6E-12 79.8 6.2 57 22-98 98-155 (155)
445 PRK00093 GTP-binding protein D 98.5 5.5E-08 1.2E-12 96.5 3.7 90 23-129 172-266 (435)
446 KOG2355 Predicted ABC-type tra 98.5 2.3E-07 5E-12 81.2 6.6 69 131-207 165-233 (291)
447 COG0218 Predicted GTPase [Gene 98.5 1.4E-07 3.1E-12 82.3 5.4 59 23-101 23-83 (200)
448 COG1129 MglA ABC-type sugar tr 98.5 1.9E-07 4.2E-12 92.4 6.8 166 15-202 276-481 (500)
449 cd03243 ABC_MutS_homologs The 98.5 1.4E-07 3E-12 83.9 5.1 33 15-47 20-52 (202)
450 PRK09518 bifunctional cytidyla 98.5 9.2E-08 2E-12 100.5 4.5 88 25-129 451-543 (712)
451 cd03240 ABC_Rad50 The catalyti 98.5 1.2E-07 2.6E-12 84.6 4.2 26 19-45 18-43 (204)
452 TIGR03594 GTPase_EngA ribosome 98.5 1.1E-07 2.4E-12 94.1 4.1 88 25-129 173-265 (429)
453 cd00880 Era_like Era (E. coli 98.5 9.5E-08 2.1E-12 79.4 3.0 59 29-103 1-60 (163)
454 cd01853 Toc34_like Toc34-like 98.4 3.4E-07 7.4E-12 84.0 6.5 65 20-101 27-92 (249)
455 PRK00454 engB GTP-binding prot 98.4 9.4E-08 2E-12 83.9 2.7 58 23-100 23-82 (196)
456 TIGR02858 spore_III_AA stage I 98.4 6.1E-07 1.3E-11 83.3 7.9 38 25-73 112-149 (270)
457 TIGR00437 feoB ferrous iron tr 98.4 9E-08 1.9E-12 98.3 2.6 81 31-129 1-83 (591)
458 KOG0066 eIF2-interacting prote 98.4 1.6E-07 3.5E-12 90.2 4.0 73 123-207 421-495 (807)
459 PRK04213 GTP-binding protein; 98.4 1.7E-07 3.6E-12 82.9 3.8 55 24-99 9-63 (201)
460 KOG0410 Predicted GTP binding 98.4 8.7E-08 1.9E-12 88.7 1.8 89 23-129 177-268 (410)
461 cd03272 ABC_SMC3_euk Eukaryoti 98.4 1.1E-06 2.3E-11 80.3 8.6 24 24-47 23-46 (243)
462 PRK09563 rbgA GTPase YlqF; Rev 98.4 4.8E-07 1E-11 84.9 6.3 61 22-102 119-180 (287)
463 cd01861 Rab6 Rab6 subfamily. 98.4 6.1E-07 1.3E-11 75.9 6.1 58 26-98 2-59 (161)
464 TIGR03598 GTPase_YsxC ribosome 98.3 1.8E-07 3.9E-12 81.3 2.0 60 22-101 16-77 (179)
465 TIGR03596 GTPase_YlqF ribosome 98.3 1E-06 2.2E-11 82.2 6.7 60 23-102 117-177 (276)
466 PRK15467 ethanolamine utilizat 98.3 2.5E-07 5.4E-12 79.0 2.0 23 26-48 3-25 (158)
467 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 1.4E-06 3E-11 72.9 5.7 54 26-99 85-139 (141)
468 KOG0065 Pleiotropic drug resis 98.3 3E-06 6.5E-11 91.4 9.2 176 15-207 132-347 (1391)
469 PRK09866 hypothetical protein; 98.3 8E-07 1.7E-11 89.9 4.6 35 25-59 70-105 (741)
470 cd03274 ABC_SMC4_euk Eukaryoti 98.3 2.8E-06 6.1E-11 76.2 7.6 21 25-45 26-46 (212)
471 cd04160 Arfrp1 Arfrp1 subfamil 98.2 4.8E-07 1E-11 77.1 2.4 57 26-99 1-61 (167)
472 cd03271 ABC_UvrA_II The excisi 98.2 1.2E-06 2.7E-11 80.8 5.0 30 15-44 12-41 (261)
473 TIGR00231 small_GTP small GTP- 98.2 2.4E-06 5.3E-11 70.8 6.4 59 25-98 2-60 (161)
474 cd01866 Rab2 Rab2 subfamily. 98.2 5.9E-07 1.3E-11 77.0 2.6 59 25-98 5-63 (168)
475 TIGR00991 3a0901s02IAP34 GTP-b 98.2 2.2E-06 4.7E-11 80.5 6.4 61 24-101 38-99 (313)
476 cd04104 p47_IIGP_like p47 (47- 98.2 1.3E-06 2.7E-11 77.4 4.5 24 25-48 2-25 (197)
477 cd03285 ABC_MSH2_euk MutS2 hom 98.2 5.5E-06 1.2E-10 74.8 8.6 31 15-45 21-51 (222)
478 cd00154 Rab Rab family. Rab G 98.2 6E-07 1.3E-11 74.9 2.1 58 26-98 2-59 (159)
479 cd01887 IF2_eIF5B IF2/eIF5B (i 98.2 7.9E-07 1.7E-11 75.7 2.9 60 26-99 2-61 (168)
480 COG1161 Predicted GTPases [Gen 98.2 1.7E-06 3.7E-11 82.5 5.3 60 24-103 132-192 (322)
481 cd01868 Rab11_like Rab11-like. 98.2 2.9E-06 6.4E-11 72.1 6.1 59 25-98 4-62 (165)
482 cd01130 VirB11-like_ATPase Typ 98.2 1.5E-06 3.3E-11 76.2 4.4 44 17-71 18-61 (186)
483 cd04166 CysN_ATPS CysN_ATPS su 98.2 4E-07 8.6E-12 81.3 0.7 24 26-49 1-24 (208)
484 TIGR03597 GTPase_YqeH ribosome 98.2 1.6E-06 3.6E-11 83.9 4.9 59 23-101 153-217 (360)
485 COG3596 Predicted GTPase [Gene 98.2 7.2E-07 1.6E-11 81.3 2.0 89 23-128 38-127 (296)
486 cd03273 ABC_SMC2_euk Eukaryoti 98.2 9E-06 1.9E-10 74.7 9.3 24 24-47 25-48 (251)
487 cd04142 RRP22 RRP22 subfamily. 98.2 1.2E-06 2.5E-11 77.8 3.1 60 26-100 2-61 (198)
488 COG3845 ABC-type uncharacteriz 98.2 1.3E-05 2.9E-10 78.5 10.5 168 12-204 272-485 (501)
489 cd01888 eIF2_gamma eIF2-gamma 98.2 2E-06 4.3E-11 76.6 4.4 23 26-48 2-24 (203)
490 PF04548 AIG1: AIG1 family; I 98.2 3.8E-06 8.3E-11 75.3 6.3 60 26-102 2-63 (212)
491 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.1 1.2E-06 2.6E-11 74.7 2.7 59 25-98 3-61 (166)
492 cd04155 Arl3 Arl3 subfamily. 98.1 4.6E-06 1E-10 71.5 6.3 51 24-98 14-68 (173)
493 KOG0060 Long-chain acyl-CoA tr 98.1 8.4E-06 1.8E-10 81.1 8.8 45 15-70 452-496 (659)
494 cd00820 PEPCK_HprK Phosphoenol 98.1 2.7E-06 5.8E-11 67.6 4.2 32 14-45 5-36 (107)
495 TIGR03238 dnd_assoc_3 dnd syst 98.1 2.5E-06 5.3E-11 84.1 4.6 46 15-73 23-69 (504)
496 cd01856 YlqF YlqF. Proteins o 98.1 4.8E-06 1E-10 72.0 5.8 56 23-98 114-170 (171)
497 cd00879 Sar1 Sar1 subfamily. 98.1 7.5E-06 1.6E-10 71.5 6.9 56 23-98 18-73 (190)
498 cd01876 YihA_EngB The YihA (En 98.1 3E-06 6.4E-11 71.5 4.2 55 27-101 2-58 (170)
499 cd00881 GTP_translation_factor 98.1 1.8E-06 3.8E-11 74.8 2.8 24 26-49 1-24 (189)
500 cd03282 ABC_MSH4_euk MutS4 hom 98.1 1.4E-05 3E-10 71.3 8.4 34 14-47 19-52 (204)
No 1
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=4.1e-72 Score=511.28 Aligned_cols=345 Identities=62% Similarity=0.997 Sum_probs=318.0
Q ss_pred CCCccccCcCCCCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhc
Q 018809 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLF 80 (350)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~ 80 (350)
|||+.-. ...+++.+|...+..+||||.||+|||||||+||.....++||||||++|+.+.|.+++.+++.++..|
T Consensus 1 ~~~kk~~----~~~~~~~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y 76 (391)
T KOG1491|consen 1 MPPKKDI----EEKKVLLGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIY 76 (391)
T ss_pred CCccccc----ccccccccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhc
Confidence 5665522 356889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeeeeecccccccccCccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHHHH
Q 018809 81 KPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 160 (350)
Q Consensus 81 ~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~ 160 (350)
+++..+|..++++|++|+.++++.|.++||+|++++|.+|+++||+|||.+.|+.|+.+++||.+|++++.+|+.++|++
T Consensus 77 ~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e 156 (391)
T KOG1491|consen 77 GPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLE 156 (391)
T ss_pred CCcceeeeeEEEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccc----ccHHHHHHHHHHHHHHhhcCCc-ccc-CCCChhHHHHHHHhhhhhcCCcchhcccchh
Q 018809 161 FMERRIEDVEKSMKRSND----KQLKIEHELCQRVKAWLQDGKD-VRL-GDWKAADIEILNTFQLLTAKPVVYLVNMNEK 234 (350)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~----h~~~~~~~l~~~i~~~L~~g~~-~~~-~~~t~~~~e~i~~~~~~~~kp~~~~~n~~~~ 234 (350)
.++++++++.+.....+. +.......+++++..+|.+|+. +.+ ..|++++++++...++++.||++|++|+++.
T Consensus 157 ~l~k~~e~~~k~~~~~~~~~~~~q~k~e~~~l~~v~~~ll~~kk~~~~~~~W~d~eieiln~~~lLt~kP~Vyl~N~se~ 236 (391)
T KOG1491|consen 157 FLEKRLEKLEKKHKRTKSNLETKQLKFEYGLLEKVKEKLLDGKKPVRPKEKWNDEEIEILNKLFLLTAKPTVYLLNLSEH 236 (391)
T ss_pred HHHHHHHHHhhhhhcccCcHHHHHHHHHHhHHHHHHHHHhccCCCCcchhhcCHHHHHHHHHhhhhhcCceEEEEecCcc
Confidence 999999988876644432 4455567789999888866554 344 8999999999999999999999999999999
Q ss_pred hhhhhcccChhHHHHHHHhhC-CCeEEEecHHHHHHhcCCChhHHHHHHHhcCCCCcHHHHHHHHHhhcCCceeeccCCC
Q 018809 235 DYQRKKNKFLPKIHAWVQEHG-GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPD 313 (350)
Q Consensus 235 ~~~~~~~~~~~~i~~~~~~~~-~~~~v~~sa~~e~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~l~li~~ft~~~~ 313 (350)
++..+++.++.++++|.+++. ++.++++|+..|.++..+.+||+.+|++..+..|+|+++|.+.|+.|+||+|||+||+
T Consensus 237 dy~r~knk~l~~i~~w~~~~~~g~~~i~fs~~~e~ql~~~~~EE~~~~~~~~~~~s~L~~iI~~~~~~L~li~fFt~G~~ 316 (391)
T KOG1491|consen 237 DYARKKNKKLPKIKEWVDEVSPGDVVIVFSAAFESQLFELYEEEAVKELEDLGDSSALPKIIKTGYSALNLIVFFTCGED 316 (391)
T ss_pred hhhhHHHHHHhhhhhhhhccCCCCeEEEehHHHHHHhhccCHHHHHHHHHhcccccchhHHHHHHHHhhCceEEEeeCCc
Confidence 887777889999999998754 6789999999999999999999999999999779999999999999999999999999
Q ss_pred CeeeeecCCCCChhhhhhccccccccCeeEEEEEee
Q 018809 314 EVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVVAC 349 (350)
Q Consensus 314 e~~a~~~~~gsta~~~A~~IHsd~~~~fi~A~v~~~ 349 (350)
|+|+|||++|++|++|||+|||||+++||.|+|++|
T Consensus 317 eV~~WtIr~gt~ap~aagvihsdf~k~Fi~aev~~f 352 (391)
T KOG1491|consen 317 EVRAWTIRKGTKAPQAAGVIHSDFEKGFIMAEVMKF 352 (391)
T ss_pred hheeeehhhccccccccceeeehhhhhccccceeee
Confidence 999999999999999999999999999999999988
No 2
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=100.00 E-value=5.4e-72 Score=530.53 Aligned_cols=323 Identities=48% Similarity=0.821 Sum_probs=298.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~ 103 (350)
+..+||||.||+|||||||+|||....+++|||||++|+.|.+.+++.+++.++.++.|++.++.+++++|+||+..+++
T Consensus 2 ~~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 2 GLKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 57899999999999999999999998889999999999999999999888899999999999999999999999999888
Q ss_pred cCccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHH
Q 018809 104 EGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKI 183 (350)
Q Consensus 104 ~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~ 183 (350)
.+.+++++|++.++.+|+++||+|+|.++++.+..+..||..++++++.|+.++|++.++++|+++.+....+. .....
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~~~-~~~~~ 160 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKGGD-KEAKA 160 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccc-hhHHH
Confidence 88889999999999999999999999999999988889999999999999999999999999998887653322 23456
Q ss_pred HHHHHHHHHHHhhcCCccccCCCChhHHHHHHHhhhhhcCCcchhcccchhhhhhhcccChhHHHHHHHhhCCCeEEEec
Q 018809 184 EHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFS 263 (350)
Q Consensus 184 ~~~l~~~i~~~L~~g~~~~~~~~t~~~~e~i~~~~~~~~kp~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~s 263 (350)
..+++++|...|++|++++...|++++.+.++.+++++.||++|++|+++.++. ..+++++++.+++.+. +.+++++|
T Consensus 161 e~~~l~~v~~~Le~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~~~~-~~~~~~~~i~~~~~~~-~~~~i~~s 238 (364)
T PRK09601 161 ELELLEKLLEHLEEGKPARTLELTDEEEKLLKSLQLLTAKPVLYVANVDEDDLA-DGNPYVKKVREIAAKE-GAEVVVIC 238 (364)
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCHHHHHHHHHhcccccCCeEEEEECCccccc-cccHHHHHHHHHHHHc-CCeEEEEE
Confidence 678889999999999998878899999999999999999999999999987653 3456888999888764 67899999
Q ss_pred HHHHHHhcCCChhHHHHHHHhcC-CCCcHHHHHHHHHhhcCCceeeccCCCCeeeeecCCCCChhhhhhccccccccCee
Q 018809 264 CALERNLADMPPDEAAKYCEENK-VQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFI 342 (350)
Q Consensus 264 a~~e~~l~~l~~~~~~~~~~~~~-~~~~l~~li~~~~~~l~li~~ft~~~~e~~a~~~~~gsta~~~A~~IHsd~~~~fi 342 (350)
|..|.+|++|+++++.+||+.+| .+++++++++++|++||||+|||||++|+|||||++||||+||||+|||||+||||
T Consensus 239 a~~E~el~~l~~ee~~~fl~~~g~~~s~~~~ii~~~~~~L~li~fftvg~~evrawti~~GstA~~aAg~IHsD~~kgFI 318 (364)
T PRK09601 239 AKIEAEIAELDDEEKAEFLEELGLEESGLDRLIRAGYELLGLITYFTAGPKEVRAWTIKKGTTAPQAAGVIHTDFEKGFI 318 (364)
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCCcchhHHHHHHHHHHHhCCEEEecCCCCeEEEEEeCCCCchHHHhhcchhhHhhccE
Confidence 99999999998889999999999 69999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEee
Q 018809 343 CAEVVAC 349 (350)
Q Consensus 343 ~A~v~~~ 349 (350)
||||++|
T Consensus 319 ~AeVi~~ 325 (364)
T PRK09601 319 RAEVISY 325 (364)
T ss_pred EEEEecH
Confidence 9999998
No 3
>PTZ00258 GTP-binding protein; Provisional
Probab=100.00 E-value=2.2e-71 Score=532.02 Aligned_cols=335 Identities=63% Similarity=1.096 Sum_probs=303.5
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeee
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D 94 (350)
.-...+...+..+||||.||+|||||||+|++..+.++||||||++|+.|.+.+++.+++.++.++.+++.++.+++++|
T Consensus 12 ~~~~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvD 91 (390)
T PTZ00258 12 KVLLGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITD 91 (390)
T ss_pred chhhccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEE
Confidence 34455668889999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred ecccccccccCccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018809 95 IAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK 174 (350)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~ 174 (350)
+||+..+.+.+.+++++|++.++.+|+++||+|++.++++.|.++..||..+++.++.|+.++++..++++++++.+...
T Consensus 92 tpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~ 171 (390)
T PTZ00258 92 IAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRK 171 (390)
T ss_pred CCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 99999988888889999999999999999999999999999999999999999999999999999999999988876531
Q ss_pred hc-ccccHHHHHHHHHHHHHHhhcCCccccCCCChhHHHHHHHhhhhhcCCcchhcccchhhhhhhcccChhHHHHHHHh
Q 018809 175 RS-NDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQE 253 (350)
Q Consensus 175 ~~-~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t~~~~e~i~~~~~~~~kp~~~~~n~~~~~~~~~~~~~~~~i~~~~~~ 253 (350)
.. .........+++++|..+|++|.+++..+|++++.+.++.+++++.||++|++|+.+.++....+.+++++.++++.
T Consensus 172 ~~~~~~~~~~~~~~l~~v~~~L~~~~~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~ 251 (390)
T PTZ00258 172 KKKKKKEEKVELDVLKKVLEWLEEGKPVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGE 251 (390)
T ss_pred cccchhhHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhcccchHHHHHHHHHHHh
Confidence 11 11233445788899999999999998889999999999999999999999999999766522335578888887765
Q ss_pred hCCCeEEEecHHHHHHhcCC-ChhHHHHHHHhcC-CCCcHHHHHHHHHhhcCCceeeccCCCCeeeeecCCCCChhhhhh
Q 018809 254 HGGEQIIPFSCALERNLADM-PPDEAAKYCEENK-VQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAG 331 (350)
Q Consensus 254 ~~~~~~v~~sa~~e~~l~~l-~~~~~~~~~~~~~-~~~~l~~li~~~~~~l~li~~ft~~~~e~~a~~~~~gsta~~~A~ 331 (350)
..+.+++++||+.|.+|++| +++++.+||+.+| .+++++++++++|++||||+|||+||||+||||+++||||+||||
T Consensus 252 ~~~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL~li~ffT~g~~e~raw~i~~Gsta~~aAg 331 (390)
T PTZ00258 252 KGGGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLLNLIHFFTAGPDEVRCWTIQKGTKAPQAAG 331 (390)
T ss_pred cCCCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHhCCEEEEcCCCCceeEEEeCCCCcHHHHHh
Confidence 42467999999999999999 9999999999999 599999999999999999999999999999999999999999999
Q ss_pred ccccccccCeeEEEEEee
Q 018809 332 TIHTDFERGFICAEVVAC 349 (350)
Q Consensus 332 ~IHsd~~~~fi~A~v~~~ 349 (350)
+|||||+|||||||||+|
T Consensus 332 ~IHsD~~kgFi~Aev~~~ 349 (390)
T PTZ00258 332 VIHSDFEKGFICAEVMKY 349 (390)
T ss_pred hhhhHHhhCcEEEEECcH
Confidence 999999999999999997
No 4
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=100.00 E-value=3.4e-70 Score=518.27 Aligned_cols=323 Identities=40% Similarity=0.616 Sum_probs=295.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~-~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
+..+||||.||+|||||||+||+... .+++|||||+.|+.|.+.+++.+++.++.++++.+..+..++++|+||+..++
T Consensus 2 ~lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 2 GLSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred CceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 47899999999999999999999998 88999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHH
Q 018809 103 HEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK 182 (350)
Q Consensus 103 ~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~ 182 (350)
+++.+++++|++.++.+|+++||+|+|.++++.|..+..||..++.+++.|+.++|+..++++++++.+.... + ....
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~~~~ek~l~r~~k~~k~-~-k~~~ 159 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADEFLVEKRIGRSKKSAEG-G-KDKK 159 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc-c-hhhH
Confidence 9999999999999999999999999999999999998999999999999999999999999999888875432 2 3345
Q ss_pred HHHHHHHHHHHHhhcCCccccCCCChhHHHHHHHhhhhhcCCcchhcccchhhhhhhcccChhHHHHHHHhh--CCCeEE
Q 018809 183 IEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEH--GGEQII 260 (350)
Q Consensus 183 ~~~~l~~~i~~~L~~g~~~~~~~~t~~~~e~i~~~~~~~~kp~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~v 260 (350)
....+++++..+|++|++++...+++++..+++.++++|.||++|++|+.++.+..+.+.+.+.++ |+... .+..++
T Consensus 160 ~e~~ll~~~~~~Le~~~~~r~~~~~~ee~~~~~~~~llt~Kp~~~v~N~~e~~~~~~n~~~~~~~~-~~~~~~~~~~~~~ 238 (368)
T TIGR00092 160 EELLLLEIILPLLNGGQMARHVDLSKEELILIKSLNLLTKKPIILIANVSEDYLRNLNNNYLLIVE-WIAAYSKGDPKVV 238 (368)
T ss_pred HHHHHHHHHHHHHhCCCeeccCCCCHHHHHHHHhCcchhhCCEEEEEECCHHHhhhcccHHHHHHH-HHhhcCcCCCeEE
Confidence 678899999999999999987678888888999999999999999999998766422244555555 77653 256789
Q ss_pred EecHHHHHHhcCCChhHHHHHHHhcC-CCC-cHHHHHHHHHhhcCCceeeccCCCCeeeeecCCCCChhhhhhccccccc
Q 018809 261 PFSCALERNLADMPPDEAAKYCEENK-VQS-ALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFE 338 (350)
Q Consensus 261 ~~sa~~e~~l~~l~~~~~~~~~~~~~-~~~-~l~~li~~~~~~l~li~~ft~~~~e~~a~~~~~gsta~~~A~~IHsd~~ 338 (350)
++||..|.++++|+++|+.+|++++| .+| ++++|++..|++|+|++|||+||+|+||||+++|+||++|||+|||||+
T Consensus 239 ~~~a~~E~el~~l~~ee~~~fl~~~g~~~s~~~~~ii~~~y~lL~L~sFfT~g~~EvRaWti~~G~~Ap~AAG~IHsDfe 318 (368)
T TIGR00092 239 FVCALEESELSELDDEERQEFLQKLGLTESAGLNIIIRARYKLLLLSFFFTGGKEEVRAWTRKGGWAAPQAAGIIHTDFE 318 (368)
T ss_pred EeEHHHHHHHhcCCHHHHHHHHHHcCCcccchHHHHHHHHHHHhCeeEEEcCCCceeEEeecCCCCchhHhcCCcccccc
Confidence 99999999999999999999999999 688 9999999999999999999999999999999999999999999999999
Q ss_pred cCeeEEEEEee
Q 018809 339 RGFICAEVVAC 349 (350)
Q Consensus 339 ~~fi~A~v~~~ 349 (350)
||||||||++|
T Consensus 319 kgFIrAEV~~y 329 (368)
T TIGR00092 319 TGFIAAEVISW 329 (368)
T ss_pred cCceEEEEecH
Confidence 99999999998
No 5
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.7e-70 Score=508.66 Aligned_cols=325 Identities=46% Similarity=0.793 Sum_probs=299.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhcc-CCCCCCcceeeeeecccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFK-PKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~-~~~~~~~~l~~~D~~g~~~~ 101 (350)
++..+||||.||+|||||||+||...++++||||||++|+.|.+++++.++..++.++. +++..+..++++|++|+.++
T Consensus 1 m~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 1 MSLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CCceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 35689999999999999999999999888999999999999999999999999999999 78888999999999999999
Q ss_pred cccCccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cc
Q 018809 102 AHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN--DK 179 (350)
Q Consensus 102 ~~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~--~h 179 (350)
+++|+++||+||+++|.+|+++||||||.+.++.|..+.+||..|+++++.|+++||++.++++|+++.+....++ .+
T Consensus 81 As~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~~~~k 160 (372)
T COG0012 81 ASKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLDK 160 (372)
T ss_pred cccCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988764443 35
Q ss_pred cHHHHHHHHHHHHHHhhcCCccc---cCCCChhHHHHHHHhhhhhcCCcchhcccchhhhhhhcccChhHHHHHHHhhCC
Q 018809 180 QLKIEHELCQRVKAWLQDGKDVR---LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGG 256 (350)
Q Consensus 180 ~~~~~~~l~~~i~~~L~~g~~~~---~~~~t~~~~e~i~~~~~~~~kp~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~ 256 (350)
...+...++..+...|.+|++.+ ...|++++...++..++++.||++|++|+.+.+... .+.++++++++.+.. +
T Consensus 161 ~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~-~n~~~~~i~~~~~~~-~ 238 (372)
T COG0012 161 ELKEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLAN-LNEYVKRLKELAAKE-N 238 (372)
T ss_pred HHHHHHHHHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccc-hhHHHHHHHHHhhhc-C
Confidence 56667788898989999998865 356999999999989999999999999999877642 256799999988764 5
Q ss_pred CeEEEecHHHHHHhcCCCh-hHHHHHHHhcC-CCCcHHHHHHHHHhhcCCceeeccCCCCeeeeecCCCCChhhhhhccc
Q 018809 257 EQIIPFSCALERNLADMPP-DEAAKYCEENK-VQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIH 334 (350)
Q Consensus 257 ~~~v~~sa~~e~~l~~l~~-~~~~~~~~~~~-~~~~l~~li~~~~~~l~li~~ft~~~~e~~a~~~~~gsta~~~A~~IH 334 (350)
.+++++||+.|.+|++|++ +++.+|+...| .+++|++++.+.|.+|||++|||+|++|+|+||+++|+||+|+||.||
T Consensus 239 ~~vV~~sA~~E~eL~~l~~~~e~~~F~~~~g~~~~~l~~~i~~~y~~lgl~~~ft~g~~evrawti~~g~kap~aaG~Ih 318 (372)
T COG0012 239 AEVVPVSAAIELELRELADAEEKGEFLIELGQKESGLNELIRAGYGLLGLQTYFTAGVKEVRAWTIKDGSKAPDAAGVIH 318 (372)
T ss_pred CcEEEeeHHHHHHHHhCccccchhhHHHhcCcchhHHHHHHHHHhcccchhHHHhhcCCeEEEEEeccCCcccccCCccc
Confidence 7899999999999999987 88999999999 489999999999999999999999999999999999999999999999
Q ss_pred cccccCeeEEEEEee
Q 018809 335 TDFERGFICAEVVAC 349 (350)
Q Consensus 335 sd~~~~fi~A~v~~~ 349 (350)
|||++|||+|+|++|
T Consensus 319 ~Dfe~~fi~aevi~~ 333 (372)
T COG0012 319 PDFEKGFIRAEVISY 333 (372)
T ss_pred cchhhccccceEeeH
Confidence 999999999999987
No 6
>PRK09602 translation-associated GTPase; Reviewed
Probab=100.00 E-value=9.8e-51 Score=393.42 Aligned_cols=315 Identities=26% Similarity=0.371 Sum_probs=249.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeC----CcchhHHHhhcc---CCCCCCcceeeeeecc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP----DERFEWLCQLFK---PKSAVPAFLEIHDIAG 97 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~----~~~l~~l~~~~~---~~~~~~~~l~~~D~~g 97 (350)
.++||||.||+|||||||+||+....+++|||||++|+.|.+.++ +.+++.++.... +....+.+++++|+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 479999999999999999999998888999999999999998874 445555443322 2224456789999999
Q ss_pred cccccccCccccchHHHHHHHHHHHHHHHhhcCCC----ceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018809 98 LVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDP----DIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM 173 (350)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~----~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~ 173 (350)
+..+++++.+++++|++.++.+|+++||+|++.++ .+.+ ++..||..++++++.|+..+|+..+++++.++.+..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~-~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~ 160 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVE-PGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKA 160 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccC-CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99998888899999999999999999999999543 2334 677899999999999999999999999988876544
Q ss_pred hhccc-cc--HHHHHHHH----HHHHHHhh-cCCccccCCCChhHHHHHHHhhhhhcCCcchhcccchhhhhhhcccChh
Q 018809 174 KRSND-KQ--LKIEHELC----QRVKAWLQ-DGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLP 245 (350)
Q Consensus 174 ~~~~~-h~--~~~~~~l~----~~i~~~L~-~g~~~~~~~~t~~~~e~i~~~~~~~~kp~~~~~n~~~~~~~~~~~~~~~ 245 (350)
..+.. .. .......+ ++|..+|+ .|.+.+...|++++...++.+.+++.||++|++|+.|... .+.++.
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~---~~~~l~ 237 (396)
T PRK09602 161 QAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPP---AEENIE 237 (396)
T ss_pred hcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhccc---chHHHH
Confidence 22210 00 11111122 66888887 5777666789999998898898899999999999987421 122344
Q ss_pred HHHHHHHhhCCCeEEEecHHHHHHhcC---------------------CChhHH------HHHHHhcCCCCcHHHHH-HH
Q 018809 246 KIHAWVQEHGGEQIIPFSCALERNLAD---------------------MPPDEA------AKYCEENKVQSALPKII-KT 297 (350)
Q Consensus 246 ~i~~~~~~~~~~~~v~~sa~~e~~l~~---------------------l~~~~~------~~~~~~~~~~~~l~~li-~~ 297 (350)
++.++ ....++++||..|.++.+ +++++. .+|+..+|. +++++++ ++
T Consensus 238 ~i~~~----~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r~~E~IRk~l~~~g~-~~~~~~i~~~ 312 (396)
T PRK09602 238 RLKEE----KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKKALEYIREVLKKYGG-TGVQEAINTA 312 (396)
T ss_pred HHHhc----CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHHHHHHHHHHHHHhCC-chHHHHHHHH
Confidence 44443 345699999999998776 443331 267777887 8999999 99
Q ss_pred HHhhcCCceeeccCC----------CCeeeeecCCCCChhhhhhccccccccCeeEEEEEe
Q 018809 298 GFSAINLIYFFTAGP----------DEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVVA 348 (350)
Q Consensus 298 ~~~~l~li~~ft~~~----------~e~~a~~~~~gsta~~~A~~IHsd~~~~fi~A~v~~ 348 (350)
+|++|+||+|||+++ ++.|||++++||||+|+|++|||||+++||||+.|.
T Consensus 313 ~~~~L~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~~~ 373 (396)
T PRK09602 313 VFDLLDMIVVYPVEDENKLTDKKGNVLPDAFLLPKGSTARDLAYKIHTDIGEGFLYAIDAR 373 (396)
T ss_pred HHHHhCCEEEEecCcccccccccCcccceeEEECCCCCHHHHHHHHHHHHHhhceehhccc
Confidence 999999999999975 566799999999999999999999999999998753
No 7
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=100.00 E-value=4.8e-48 Score=356.45 Aligned_cols=273 Identities=51% Similarity=0.829 Sum_probs=246.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccccCc
Q 018809 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQ 106 (350)
Q Consensus 27 igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~ 106 (350)
+||||.||+|||||||+|||....+++|||||++|+.|.+.+++.+++.++.++.|.+.++.+++++|+||+.++++.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 58999999999999999999999889999999999999999999999999999999999999999999999999998888
Q ss_pred cccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHH
Q 018809 107 GLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHE 186 (350)
Q Consensus 107 ~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~ 186 (350)
+++++|++.++.+|+++||+|+|.++++.+..+.+||..++++++.|+.++|+..++++++++.+...... .......+
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ek~~~~l~k~~~~~~-~~~~~e~~ 159 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSGD-KEAKAELE 159 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc-HHHHHHHH
Confidence 99999999999999999999999999999998889999999999999999999999999998887653322 33566778
Q ss_pred HHHHHHHHhhcCCccccCCCChhHHHHHHHhhhhhcCCcchhcccchhhhhhhcccChhHHHHHHHhhCCCeEEEecHHH
Q 018809 187 LCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSCAL 266 (350)
Q Consensus 187 l~~~i~~~L~~g~~~~~~~~t~~~~e~i~~~~~~~~kp~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~sa~~ 266 (350)
+++++..+|++|++++...|++++.+.++.+++++.||++|++|++++++. ..+.+..++..+... .+.+++++||..
T Consensus 160 ~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~d~~-~~~~~~~~~~~~~~~-~~~~~i~~sa~~ 237 (274)
T cd01900 160 LLEKIKEHLEEGKPARSLELTEEEIEILNSLQLLTAKPVLYVANVSEDDLA-NGNNKVLKVREIAAK-EGAEVIPISAKI 237 (274)
T ss_pred HHHHHHHHHHcCCCcCcCCCCHHHHHHHHHHhHhhcCCceeecccCHHHhc-cccHHHHHHHHHHhc-CCCeEEEeeHHH
Confidence 999999999999999888999999999999999999999999999987663 223445556655544 367899999999
Q ss_pred HHHhcCCChhHHHHHHHhcC-CCCcHHHHHHHHHhhc
Q 018809 267 ERNLADMPPDEAAKYCEENK-VQSALPKIIKTGFSAI 302 (350)
Q Consensus 267 e~~l~~l~~~~~~~~~~~~~-~~~~l~~li~~~~~~l 302 (350)
|.+|++|+++|+.+|++++| .++++++||+++|++|
T Consensus 238 E~eL~~l~~ee~~~fl~~~gi~es~l~riI~~~y~~L 274 (274)
T cd01900 238 EAELAELDEEEAAEFLEELGLEESGLDRLIRAGYELL 274 (274)
T ss_pred HHHHHcCCHHHHHHHHHHcCCccccHHHHHHHHHhhC
Confidence 99999999999999999999 6899999999999986
No 8
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=100.00 E-value=3.8e-37 Score=280.93 Aligned_cols=263 Identities=27% Similarity=0.380 Sum_probs=194.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~ 103 (350)
...+++||+|++|||||+|+|||...+++.|||||..|..|.+.+.| .++|++|+||+..+++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g-----------------a~IQild~Pgii~gas 125 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG-----------------AQIQLLDLPGIIEGAS 125 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC-----------------ceEEEEcCcccccCcc
Confidence 35899999999999999999999999999999999999999999997 4699999999999999
Q ss_pred cCccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccc---c
Q 018809 104 EGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVE-KSMKRSND---K 179 (350)
Q Consensus 104 ~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~-~~~~~~~~---h 179 (350)
.+.++|.+++..+|.||+++.|+|++.++ ..++.+.+|+-...+.. .+....+. +....++- .
T Consensus 126 ~g~grG~~vlsv~R~ADlIiiVld~~~~~------------~~~~~i~~ELe~~GIrl-nk~~p~V~I~kk~~gGI~i~~ 192 (365)
T COG1163 126 SGRGRGRQVLSVARNADLIIIVLDVFEDP------------HHRDIIERELEDVGIRL-NKRPPDVTIKKKESGGIRING 192 (365)
T ss_pred cCCCCcceeeeeeccCCEEEEEEecCCCh------------hHHHHHHHHHHhcCeEe-cCCCCceEEEEeccCCEEEec
Confidence 99999999999999999999988886432 23566665544444321 11111110 00001110 0
Q ss_pred cHHHHHHHHHHHHHHhhcCCcc-----ccCCCChhHHHHHHHhhhhhcCCcchhcccchhhhhhhcccChhHHHHHHHhh
Q 018809 180 QLKIEHELCQRVKAWLQDGKDV-----RLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEH 254 (350)
Q Consensus 180 ~~~~~~~l~~~i~~~L~~g~~~-----~~~~~t~~~~e~i~~~~~~~~kp~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~ 254 (350)
......--.+.|..+|.+.++. ..+++|.++....- +..+.++|.+|++|+.|... .+.+..+.+.
T Consensus 193 t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l-~~nrvY~p~l~v~NKiD~~~-------~e~~~~l~~~- 263 (365)
T COG1163 193 TGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDAL-EGNRVYKPALYVVNKIDLPG-------LEELERLARK- 263 (365)
T ss_pred ccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHH-hhcceeeeeEEEEecccccC-------HHHHHHHHhc-
Confidence 0100112235566777776654 23678888765432 24468999999999987532 2234433332
Q ss_pred CCCeEEEecHHHHHHhcCCChhHHHHHHHhcCCCCcHHHHHHHHHhhcCCceeeccCCCCe----eeeecCCCCChhhhh
Q 018809 255 GGEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPDEV----KCWQIRRQTKAPQAA 330 (350)
Q Consensus 255 ~~~~~v~~sa~~e~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~l~li~~ft~~~~e~----~a~~~~~gsta~~~A 330 (350)
...+++||.... ++++|.+.+|+.|++|++||+.|.+. .|.++++|||+.|+|
T Consensus 264 --~~~v~isa~~~~---------------------nld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~GsTV~Dvc 320 (365)
T COG1163 264 --PNSVPISAKKGI---------------------NLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRGSTVGDVC 320 (365)
T ss_pred --cceEEEecccCC---------------------CHHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCCCcHHHHH
Confidence 257899977632 58899999999999999999987443 699999999999999
Q ss_pred hccccccccCeeEEEEEe
Q 018809 331 GTIHTDFERGFICAEVVA 348 (350)
Q Consensus 331 ~~IHsd~~~~fi~A~v~~ 348 (350)
.+||+||.+.|.||.||+
T Consensus 321 ~~IH~~l~~~FryA~VWG 338 (365)
T COG1163 321 RKIHRDLVENFRYARVWG 338 (365)
T ss_pred HHHHHHHHHhcceEEEec
Confidence 999999999999999996
No 9
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.97 E-value=4.4e-30 Score=242.48 Aligned_cols=249 Identities=29% Similarity=0.434 Sum_probs=192.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEe----CCcchhHHHhh-----ccCCCCCCcceeeeeecc
Q 018809 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI----PDERFEWLCQL-----FKPKSAVPAFLEIHDIAG 97 (350)
Q Consensus 27 igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~----~~~~l~~l~~~-----~~~~~~~~~~l~~~D~~g 97 (350)
+||||.||+|||||||+||+....+++|||||+.|+.|.+.+ ++.+++.++.. ..+.+.+ .++++|+||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v--~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYV--PVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcc--eEEEEECCC
Confidence 589999999999999999999888899999999999999887 55666666543 2222333 489999999
Q ss_pred cccccccCccccchHHHHHHHHHHHHHHHhhcCCCc---eeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018809 98 LVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPD---IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK 174 (350)
Q Consensus 98 ~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~---vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~ 174 (350)
+..+++++.+++++|++.++.+|+++||+|++.+.+ +.+..+..||..+++++..|+.+||+..+++++.++.+...
T Consensus 79 lv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~ 158 (318)
T cd01899 79 LVPGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKAD 158 (318)
T ss_pred CCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888888899999999999999999999996544 36777888999999999999999999999999988876543
Q ss_pred hccc---ccHHHHHHHH----HHHHHHhhcCC-ccccCCCChhHHHHHHHhhhhhcCCcchhcccchhhhhhhcccChhH
Q 018809 175 RSND---KQLKIEHELC----QRVKAWLQDGK-DVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPK 246 (350)
Q Consensus 175 ~~~~---h~~~~~~~l~----~~i~~~L~~g~-~~~~~~~t~~~~e~i~~~~~~~~kp~~~~~n~~~~~~~~~~~~~~~~ 246 (350)
.++. ........++ ++|..+|++|. ......|++.+.+.+...++++.||++|++|+.|.. . .+.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~--~-~~~~~~~ 235 (318)
T cd01899 159 AEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIP--D-AENNISK 235 (318)
T ss_pred cCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHcc--C-hHHHHHH
Confidence 2211 0122223333 77888888776 444467898999888888889999999999999732 1 1122222
Q ss_pred HHHHHHhhCCCeEEEecHHHHHHhcCCChhHHHHHHH
Q 018809 247 IHAWVQEHGGEQIIPFSCALERNLADMPPDEAAKYCE 283 (350)
Q Consensus 247 i~~~~~~~~~~~~v~~sa~~e~~l~~l~~~~~~~~~~ 283 (350)
+.. .....+++++||..|.++.+|.+++..+|+.
T Consensus 236 l~~---~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lP 269 (318)
T cd01899 236 LRL---KYPDEIVVPTSAEAELALRRAAKQGLIKYDP 269 (318)
T ss_pred HHh---hCCCCeEEEEeCcccccHHHHHHhhHHHhCC
Confidence 322 2224579999999999988885556777763
No 10
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.94 E-value=8e-28 Score=212.33 Aligned_cols=261 Identities=20% Similarity=0.310 Sum_probs=182.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
...++++||.|.+|||||+..||+...++++|.|||+....|.+.++|. .++++|+||++.++
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga-----------------~IQllDLPGIieGA 123 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA-----------------NIQLLDLPGIIEGA 123 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc-----------------eEEEecCccccccc
Confidence 4469999999999999999999999989999999999999999999974 58999999999999
Q ss_pred ccCccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcc----
Q 018809 103 HEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRI-EDVEKSMKRSN---- 177 (350)
Q Consensus 103 ~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~-~~~~~~~~~~~---- 177 (350)
+.++++|++..+..+.+|+++.|+|+.... ..-..++.|+..-.+.. .++. +.+-+....++
T Consensus 124 sqgkGRGRQviavArtaDlilMvLDatk~e------------~qr~~le~ELe~vGiRL-Nk~~Pniy~k~kk~gGi~f~ 190 (364)
T KOG1486|consen 124 SQGKGRGRQVIAVARTADLILMVLDATKSE------------DQREILEKELEAVGIRL-NKRKPNIYFKKKKTGGISFN 190 (364)
T ss_pred ccCCCCCceEEEEeecccEEEEEecCCcch------------hHHHHHHHHHHHhceec-cCCCCCeEEEeeccCCeEEe
Confidence 999999999999999999988877774211 11223333332222211 1110 00000000111
Q ss_pred -cccHH-HHHHHHHHHHHHhhcCCc-----cccCCCChhHHHHHHHhhhhhcCCcchhcccchhhhhhhcccChhHHHHH
Q 018809 178 -DKQLK-IEHELCQRVKAWLQDGKD-----VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAW 250 (350)
Q Consensus 178 -~h~~~-~~~~l~~~i~~~L~~g~~-----~~~~~~t~~~~e~i~~~~~~~~kp~~~~~n~~~~~~~~~~~~~~~~i~~~ 250 (350)
+-.+. --+.++ ..+|.+.++ ++..+.|.++.-.+- .....+-+.+|+-|+.|.- .++++..+
T Consensus 191 ~T~~lT~~~ek~i---~~ILheykI~Naevl~ReD~t~DdfIDvi-~gnr~Y~~ClYvYnKID~v-------s~eevdrl 259 (364)
T KOG1486|consen 191 TTVPLTHCDEKLI---YTILHEYKIHNAEVLFREDCTVDDFIDVI-EGNRVYIKCLYVYNKIDQV-------SIEEVDRL 259 (364)
T ss_pred eeeccccccHHHH---HHHHHHHeeccceEEEecCCChHHHHHHH-hccceEEEEEEEeecccee-------cHHHHHHH
Confidence 00000 011222 234554443 344567777653332 3455788999999998642 23455555
Q ss_pred HHhhCCCeEEEecHHHHHHhcCCChhHHHHHHHhcCCCCcHHHHHHHHHhhcCCceeeccCC----CCeeeeecCCCCCh
Q 018809 251 VQEHGGEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGP----DEVKCWQIRRQTKA 326 (350)
Q Consensus 251 ~~~~~~~~~v~~sa~~e~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~l~li~~ft~~~----~e~~a~~~~~gsta 326 (350)
++. ++ .+++|+... | +|++|.+.+++.|+|.++||+.+ |...|.++++|+|+
T Consensus 260 Ar~-Pn--svViSC~m~-----l----------------nld~lle~iWe~l~L~rvYtKk~g~~Pdfdd~~vlr~g~tv 315 (364)
T KOG1486|consen 260 ARQ-PN--SVVISCNMK-----L----------------NLDRLLERIWEELNLVRVYTKKKGQRPDFDDPLVLRKGSTV 315 (364)
T ss_pred hcC-CC--cEEEEeccc-----c----------------CHHHHHHHHHHHhceEEEEecCCCCCCCCCCceEEeCCCcH
Confidence 443 22 455564432 2 58999999999999999999874 55579999999999
Q ss_pred hhhhhccccccccCeeEEEEEe
Q 018809 327 PQAAGTIHTDFERGFICAEVVA 348 (350)
Q Consensus 327 ~~~A~~IHsd~~~~fi~A~v~~ 348 (350)
.++|..||.||+..|.||-||+
T Consensus 316 e~~C~~iHr~l~~qfkyAlVWG 337 (364)
T KOG1486|consen 316 EDVCHRIHRTLAAQFKYALVWG 337 (364)
T ss_pred HHHHHHHHHHHHHhhceeeEec
Confidence 9999999999999999999997
No 11
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.90 E-value=9.6e-25 Score=161.03 Aligned_cols=46 Identities=74% Similarity=1.190 Sum_probs=45.2
Q ss_pred CceeeccCCCCeeeeecCCCCChhhhhhccccccccCeeEEEEEee
Q 018809 304 LIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVVAC 349 (350)
Q Consensus 304 li~~ft~~~~e~~a~~~~~gsta~~~A~~IHsd~~~~fi~A~v~~~ 349 (350)
|++|||+||+|+||||+++|+||+||||+|||||+||||+|||++|
T Consensus 1 L~tffT~G~~EvRAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~ 46 (83)
T cd04867 1 LISFFTAGPDEVRAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKY 46 (83)
T ss_pred CccEECCCCCeEEEEEccCCCChHHhcCCcccccccCcEEEEEEcH
Confidence 7899999999999999999999999999999999999999999997
No 12
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=99.89 E-value=2.2e-24 Score=160.22 Aligned_cols=46 Identities=67% Similarity=1.152 Sum_probs=43.1
Q ss_pred CceeeccCCCCeeeeecCCCCChhhhhhccccccccCeeEEEEEee
Q 018809 304 LIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVVAC 349 (350)
Q Consensus 304 li~~ft~~~~e~~a~~~~~gsta~~~A~~IHsd~~~~fi~A~v~~~ 349 (350)
|++|||+||+|+||||+++|+||++|||+|||||+||||+|||++|
T Consensus 1 L~tffT~G~~EvRaWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~ 46 (84)
T PF06071_consen 1 LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISY 46 (84)
T ss_dssp EEEEEEESSSEEEEEEEETT-BHHHHHHCC-THHHHHEEEEEEEEH
T ss_pred CceEEccCCCeEEEEEccCCCCHHHhHhHHHHHHHhhceEEEEEcH
Confidence 6899999999999999999999999999999999999999999997
No 13
>COG1159 Era GTPase [General function prediction only]
Probab=99.87 E-value=2.9e-23 Score=189.29 Aligned_cols=196 Identities=22% Similarity=0.261 Sum_probs=145.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
..+++|||+||+|||||+|.|.|.++++ |+.|+||+....|.+..++ .|+.|+||||++...
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~-----------------~QiIfvDTPGih~pk 68 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN-----------------AQIIFVDTPGIHKPK 68 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC-----------------ceEEEEeCCCCCCcc
Confidence 3578999999999999999999999988 9999999999999988763 579999999999886
Q ss_pred cc-CccccchHHHHHHHHHHHHHHHhhcCCCc---eee---ecCCCCCC----chhHHHHHHH-HHHHHHHHHHHHHHHH
Q 018809 103 HE-GQGLGNSFLSHIRAVDGIFHVLRAFEDPD---IIH---VDDSVDPV----RDLEVISAEL-RLKDIEFMERRIEDVE 170 (350)
Q Consensus 103 ~~-~~~~~~~~l~~l~~~d~~l~vv~a~~~~~---vl~---ld~~~eP~----~~ld~~~~el-~~~~l~~l~~~~~~~~ 170 (350)
+. +..|...+.+.+..+|++++|+++..... -.+ +.....|. +.+|.+..+. ++...+.+.... .+.
T Consensus 69 ~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~-~f~ 147 (298)
T COG1159 69 HALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLL-PFK 147 (298)
T ss_pred hHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhC-Ccc
Confidence 54 45566677889999999999999864221 001 11011122 3555544433 233333332222 222
Q ss_pred HHHhhcccccHHHHHHHHHHHHHHhhcCCcccc-CCCChhHH-----HHHHHh-hhhhcCCcchhcccchhhhhh
Q 018809 171 KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAADI-----EILNTF-QLLTAKPVVYLVNMNEKDYQR 238 (350)
Q Consensus 171 ~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~-~~~t~~~~-----e~i~~~-~~~~~kp~~~~~n~~~~~~~~ 238 (350)
..++.|. ....++..|.+.+..+|++|+.+|+ +.+||.+. |++||. ++.++.++||++.+..+.+..
T Consensus 148 ~ivpiSA-~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~ 221 (298)
T COG1159 148 EIVPISA-LKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEE 221 (298)
T ss_pred eEEEeec-cccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEe
Confidence 3444453 6778899999999999999999988 67888774 899999 888999999999998877643
No 14
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.83 E-value=4.2e-21 Score=174.47 Aligned_cols=174 Identities=21% Similarity=0.254 Sum_probs=129.2
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCC-C
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKS-A 85 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~-~ 85 (350)
-.+++.+++.|++++|+||||||||||+++|+|. .+|.+|.|.++|+++..+. . .|.||. .
T Consensus 18 l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~-----------l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~ 86 (258)
T COG1120 18 LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL-----------LKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPS 86 (258)
T ss_pred EecceEEecCCcEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCC
Confidence 3678899999999999999999999999999999 7999999999998876543 2 355655 5
Q ss_pred CCcceeeeeecccccccccCccc--cch----H---HHHHHHHHHH--------------HHHHhhc-CCCceeeecCCC
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGL--GNS----F---LSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~--~~~----~---l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~~~ 141 (350)
.+..+++.|.+.+++.++.+... ..+ . ++.++..+.. +.+++|+ ++|++++||
T Consensus 87 ~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLD--- 163 (258)
T COG1120 87 APFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLD--- 163 (258)
T ss_pred CCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeC---
Confidence 67789999999999877653211 111 1 2222111111 6788998 999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
||++.+|+-++-.++..+..+.+.. ...+ .-..|++......||++ ..|++|+++..|..
T Consensus 164 EPTs~LDi~~Q~evl~ll~~l~~~~---~~tv-v~vlHDlN~A~ryad~~-i~lk~G~i~a~G~p 223 (258)
T COG1120 164 EPTSHLDIAHQIEVLELLRDLNREK---GLTV-VMVLHDLNLAARYADHL-ILLKDGKIVAQGTP 223 (258)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhc---CCEE-EEEecCHHHHHHhCCEE-EEEECCeEEeecCc
Confidence 9999999999866655544433221 1111 11239999999999999 99999999988764
No 15
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.82 E-value=4.5e-22 Score=176.70 Aligned_cols=264 Identities=20% Similarity=0.282 Sum_probs=182.7
Q ss_pred cCCc-EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 22 SSHL-KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 22 ~~g~-~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
+.|. ++|++|.|.+||||++.-|+|...+++.|.|||.....|.+.+.| +.+++.|+||++.
T Consensus 56 ktg~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g-----------------aKiqlldlpgiie 118 (358)
T KOG1487|consen 56 KTGDARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG-----------------AKIQLLDLPGIIE 118 (358)
T ss_pred eecceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc-----------------cceeeecCcchhc
Confidence 3444 899999999999999999999999999999999999999998887 3589999999999
Q ss_pred ccccCccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---
Q 018809 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN--- 177 (350)
Q Consensus 101 ~~~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~--- 177 (350)
++..+++++.+++...|.|.+++.|+|++ .|...-.+++.|+.-..+..-++.-+...+....++
T Consensus 119 gakdgkgrg~qviavartcnli~~vld~~------------kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInl 186 (358)
T KOG1487|consen 119 GAKDGKGRGKQVIAVARTCNLIFIVLDVL------------KPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINL 186 (358)
T ss_pred ccccCCCCccEEEEEeecccEEEEEeecc------------CcccHHHHHHHhhhcceeeccCCCCCccccccccCceee
Confidence 99999999999988888888877766663 577777777766554444321111110001111111
Q ss_pred --c-ccHHHHHHHHHHHHHHhhcCCccccCCCChhHHHHHHHhhhhhcCCcchhcccchhhhhhhcccChhHHHHHHHhh
Q 018809 178 --D-KQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEH 254 (350)
Q Consensus 178 --~-h~~~~~~~l~~~i~~~L~~g~~~~~~~~t~~~~e~i~~~~~~~~kp~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~ 254 (350)
+ .+++.+..+|.+- ..-. -.+....+.|.++.-..-+ +.+.+-|.+|++|+.+.-. ++++.-..
T Consensus 187 t~~~LdlD~~rsil~ey-R~hs-Adi~Lr~DaT~DdLIdvVe-gnr~yVp~iyvLNkIdsIS-------iEELdii~--- 253 (358)
T KOG1487|consen 187 TGTHLDLDLQRSILSEY-RIHS-ADIALRFDATADDLIDVVE-GNRIYVPCIYVLNKIDSIS-------IEELDIIY--- 253 (358)
T ss_pred ecchhhHHHHHHHHHHh-hhcc-hheeeecCcchhhhhhhhc-cCceeeeeeeeecccceee-------eeccceee---
Confidence 1 2233333444332 1111 1111123444444322212 3357889999999876432 12222111
Q ss_pred CCCeEEEecHHHHHHhcCCChhHHHHHHHhcCCCCcHHHHHHHHHhhcCCceeeccCC----CCeeeeecCCC-CChhhh
Q 018809 255 GGEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGP----DEVKCWQIRRQ-TKAPQA 329 (350)
Q Consensus 255 ~~~~~v~~sa~~e~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~l~li~~ft~~~----~e~~a~~~~~g-sta~~~ 329 (350)
.....+++||..+++ ++.|...+++.|+|+++||..+ |-..+..++.+ +|+.|+
T Consensus 254 ~iphavpISA~~~wn---------------------~d~lL~~mweyL~LvriYtkPKgq~PDy~~pVvLs~~~~sv~df 312 (358)
T KOG1487|consen 254 TIPHAVPISAHTGWN---------------------FDKLLEKMWEYLKLVRIYTKPKGQPPDYTSPVVLSSERRSVEDF 312 (358)
T ss_pred eccceeecccccccc---------------------hHHHHHHHhhcchheEEecCCCCCCCCCCCCceecCCcccHHHH
Confidence 122379999888764 7889999999999999999874 44467777776 899999
Q ss_pred hhccccccccCeeEEEEEe
Q 018809 330 AGTIHTDFERGFICAEVVA 348 (350)
Q Consensus 330 A~~IHsd~~~~fi~A~v~~ 348 (350)
|.+||+++.+.|.||-||+
T Consensus 313 c~~ih~~~~~~fk~alvwg 331 (358)
T KOG1487|consen 313 CNKIHKSILKQFKYALVWG 331 (358)
T ss_pred HHHHHHHHHHhhhhheEec
Confidence 9999999999999999996
No 16
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.81 E-value=1.7e-20 Score=166.18 Aligned_cols=174 Identities=18% Similarity=0.284 Sum_probs=119.3
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh---hccC-CCCCCc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ---LFKP-KSAVPA 88 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~---~~~~-~~~~~~ 88 (350)
+-+++++++++|++.|++|+|||||||+|++|+|+ ++|++|.|.++|..+.+... .|-| .+..+.
T Consensus 17 av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgl-----------le~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~ 85 (300)
T COG4152 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL-----------LEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYP 85 (300)
T ss_pred eecceeeeecCCeEEEeecCCCCCccchHHHHhcc-----------CCccCceEEEcCcchhhhhhhhcccChhhhccCc
Confidence 44889999999999999999999999999999999 79999999999977654322 2333 344555
Q ss_pred ceeeeeecccccc---ccc----------------CccccchHHHHH--HHHHHHHHHHhhcCCCceeeecCCCCCCchh
Q 018809 89 FLEIHDIAGLVRG---AHE----------------GQGLGNSFLSHI--RAVDGIFHVLRAFEDPDIIHVDDSVDPVRDL 147 (350)
Q Consensus 89 ~l~~~D~~g~~~~---~~~----------------~~~~~~~~l~~l--~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~l 147 (350)
.+++.|..-+... ..+ ......+. ..+ .+.+-+-++....+.|++++|| ||++++
T Consensus 86 k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kI-k~LSKGnqQKIQfisaviHePeLlILD---EPFSGL 161 (300)
T COG4152 86 KMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKI-KELSKGNQQKIQFISAVIHEPELLILD---EPFSGL 161 (300)
T ss_pred cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchH-HHhhhhhhHHHHHHHHHhcCCCEEEec---CCccCC
Confidence 6666665433210 000 00000000 011 1112222333334699999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 148 d~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
|+++.+++...+..+. ....++..|+ |.++.+++|||++ -+|..|+.+..|++.
T Consensus 162 DPVN~elLk~~I~~lk----~~GatIifSs-H~Me~vEeLCD~l-lmL~kG~~V~~G~v~ 215 (300)
T COG4152 162 DPVNVELLKDAIFELK----EEGATIIFSS-HRMEHVEELCDRL-LMLKKGQTVLYGTVE 215 (300)
T ss_pred ChhhHHHHHHHHHHHH----hcCCEEEEec-chHHHHHHHhhhh-heecCCceEEeccHH
Confidence 9999887766654332 2334444554 9999999999999 999999999888753
No 17
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=5.9e-20 Score=166.20 Aligned_cols=173 Identities=18% Similarity=0.239 Sum_probs=120.0
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH----hhccCCCC--
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----QLFKPKSA-- 85 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~----~~~~~~~~-- 85 (350)
|.=..++.++++|++++||||||||||||+++++|+ ++|.+|.|.+.|....... -.|.||+.
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGl-----------l~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~ 86 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGL-----------LKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSV 86 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CcCCcceEEEccccccccccCCeEEEcCccccc
Confidence 456788999999999999999999999999999998 6999999999886543221 23555532
Q ss_pred -CCcceeeeeecccccccccCc---------cccchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecCC
Q 018809 86 -VPAFLEIHDIAGLVRGAHEGQ---------GLGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 86 -~~~~l~~~D~~g~~~~~~~~~---------~~~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~~ 140 (350)
....+++.|++.++.....+. ......++.+...+.. +.++||+ .+|++++||
T Consensus 87 d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLD-- 164 (254)
T COG1121 87 DRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLD-- 164 (254)
T ss_pred CCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEec--
Confidence 123378889888875443321 1111222222222222 7799999 999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||+.++|...+..++..+..+.+. .+.+ .-.+|++..+.+.+|++ ..|+. +++..|+
T Consensus 165 -EP~~gvD~~~~~~i~~lL~~l~~e----g~tI-l~vtHDL~~v~~~~D~v-i~Ln~-~~~~~G~ 221 (254)
T COG1121 165 -EPFTGVDVAGQKEIYDLLKELRQE----GKTV-LMVTHDLGLVMAYFDRV-ICLNR-HLIASGP 221 (254)
T ss_pred -CCcccCCHHHHHHHHHHHHHHHHC----CCEE-EEEeCCcHHhHhhCCEE-EEEcC-eeEeccC
Confidence 999999999987666665444332 2222 12249999999999999 77764 4444444
No 18
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.78 E-value=6.3e-19 Score=161.14 Aligned_cols=95 Identities=36% Similarity=0.656 Sum_probs=86.5
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.++.=.-+||||.||||||||+|+|+..+..+++|+|||+.|.-|.+.+++ ..++++.|+||++
T Consensus 192 ELKsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd----------------f~q~tVADiPGiI 255 (366)
T KOG1489|consen 192 ELKSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD----------------FSQITVADIPGII 255 (366)
T ss_pred EeeeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc----------------cceeEeccCcccc
Confidence 344455789999999999999999999999999999999999999998876 3469999999999
Q ss_pred cccccCccccchHHHHHHHHHHHHHHHhhcC
Q 018809 100 RGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130 (350)
Q Consensus 100 ~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~~ 130 (350)
++++.+++++-+|+++++.++.+++|+|+..
T Consensus 256 ~GAh~nkGlG~~FLrHiER~~~l~fVvD~s~ 286 (366)
T KOG1489|consen 256 EGAHMNKGLGYKFLRHIERCKGLLFVVDLSG 286 (366)
T ss_pred ccccccCcccHHHHHHHHhhceEEEEEECCC
Confidence 9999999999999999999999999999864
No 19
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.77 E-value=1e-20 Score=168.03 Aligned_cols=175 Identities=18% Similarity=0.209 Sum_probs=118.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh----------hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ----------LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~----------~~~~ 82 (350)
+-+.++.++++|+++|||||||||||||||++||. .+|++|+|.+.|+++..++. -||.
T Consensus 19 Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~-----------~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~ 87 (250)
T COG0411 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF-----------YKPSSGTVIFRGRDITGLPPHRIARLGIARTFQI 87 (250)
T ss_pred EEeceeEEEcCCeEEEEECCCCCCceeeeeeeccc-----------ccCCCceEEECCcccCCCCHHHHHhccceeeccc
Confidence 44789999999999999999999999999999999 69999999999987654332 2443
Q ss_pred CCCCCcceeeeeeccccccccc--------------CccccchHHHHHHHHH-----------------HHHHHHhhc-C
Q 018809 83 KSAVPAFLEIHDIAGLVRGAHE--------------GQGLGNSFLSHIRAVD-----------------GIFHVLRAF-E 130 (350)
Q Consensus 83 ~~~~~~~l~~~D~~g~~~~~~~--------------~~~~~~~~l~~l~~~d-----------------~~l~vv~a~-~ 130 (350)
.+. ...+++.|+..+....+. ......+....+..++ -.+.+++|+ .
T Consensus 88 ~rl-F~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~ 166 (250)
T COG0411 88 TRL-FPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALAT 166 (250)
T ss_pred ccc-cCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhc
Confidence 333 346888887765422110 0000011111111111 126788998 8
Q ss_pred CCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 131 DPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 131 ~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
+|+++.|| ||..++..-+.+.+...+..+.+. ....+ .--.|++..+..+||+| ..|..|+++..|+..
T Consensus 167 ~P~lLLLD---EPaAGln~~e~~~l~~~i~~i~~~---~g~ti-llIEHdM~~Vm~l~dri-~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 167 QPKLLLLD---EPAAGLNPEETEELAELIRELRDR---GGVTI-LLIEHDMKLVMGLADRI-VVLNYGEVIAEGTPE 235 (250)
T ss_pred CCCEEEec---CccCCCCHHHHHHHHHHHHHHHhc---CCcEE-EEEEeccHHHhhhccEE-EeccCCcCcccCCHH
Confidence 99999999 999999887754444333222211 00000 00139999999999999 999999999887643
No 20
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.77 E-value=2e-19 Score=155.17 Aligned_cols=175 Identities=18% Similarity=0.231 Sum_probs=112.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhh-------ccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQL-------FKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~-------~~~~~~ 85 (350)
+-+.+++.+..|+++||+|+|||||||++++|.++ +.|++|.|+++|.+....+.. ...+..
T Consensus 17 AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatl-----------L~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~g 85 (245)
T COG4555 17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL-----------LIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERG 85 (245)
T ss_pred hhhheeEEeccceEEEEEcCCCCCchhHHHHHHHh-----------ccCCCceEEEeecccccChHHHhhhcceecCCcC
Confidence 34678899999999999999999999999999999 799999999998654332221 113334
Q ss_pred CCcceeeeeeccccccccc---C--ccccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCc
Q 018809 86 VPAFLEIHDIAGLVRGAHE---G--QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVR 145 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~---~--~~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~ 145 (350)
++..++.-++..+....+. . +.....+...+..-+. -+.++||+ ++|+++++| ||++
T Consensus 86 lY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlD---EP~s 162 (245)
T COG4555 86 LYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLD---EPTS 162 (245)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEc---CCCC
Confidence 4444444443322110000 0 0000000000000000 14566776 799999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 146 ~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
++|+.....+...+..++ .-.+.+.+|+ |.+++++++||++ .+|.+|+.++.++..
T Consensus 163 GLDi~~~r~~~dfi~q~k----~egr~viFSS-H~m~EvealCDrv-ivlh~Gevv~~gs~~ 218 (245)
T COG4555 163 GLDIRTRRKFHDFIKQLK----NEGRAVIFSS-HIMQEVEALCDRV-IVLHKGEVVLEGSIE 218 (245)
T ss_pred CccHHHHHHHHHHHHHhh----cCCcEEEEec-ccHHHHHHhhheE-EEEecCcEEEcCCHH
Confidence 999998644444333222 1122333454 9999999999999 999999999887653
No 21
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.76 E-value=3e-19 Score=160.50 Aligned_cols=163 Identities=18% Similarity=0.251 Sum_probs=109.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcch--------hHHHhhccCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF--------EWLCQLFKPKS 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l--------~~l~~~~~~~~ 84 (350)
+-..+++.|++|+++|++|+|||||||++++|||. +.|.+|.|.++|..- +.+...+.+..
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl-----------l~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ 107 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL-----------LLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKL 107 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc-----------cccCCCeEEecCcCcchhHHHHHHHHHHHhhhhh
Confidence 44678899999999999999999999999999999 799999999998531 11111122111
Q ss_pred CCCcceeeeeeccc---------------------------------ccccccCccccchHHHHHHHHHHHHHHHhhcCC
Q 018809 85 AVPAFLEIHDIAGL---------------------------------VRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED 131 (350)
Q Consensus 85 ~~~~~l~~~D~~g~---------------------------------~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~~~ 131 (350)
-..+|+|.. .+..-...++|+++ +...+-+++ ++
T Consensus 108 -----ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRm--raeLaaaLL------h~ 174 (325)
T COG4586 108 -----QLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRM--RAELAAALL------HP 174 (325)
T ss_pred -----eeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHH--HHHHHHHhc------CC
Confidence 123444421 11111111222221 111222222 69
Q ss_pred CceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 132 PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 132 ~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
|+|++|| ||+.++|+..++-++..+.+..+. ...++-. ++|++..+..+|++| .++..|+++++|+++
T Consensus 175 p~VLfLD---EpTvgLDV~aq~~ir~Flke~n~~---~~aTVll-TTH~~~di~~lc~rv-~~I~~Gqlv~dg~l~ 242 (325)
T COG4586 175 PKVLFLD---EPTVGLDVNAQANIREFLKEYNEE---RQATVLL-TTHIFDDIATLCDRV-LLIDQGQLVFDGTLA 242 (325)
T ss_pred CcEEEec---CCccCcchhHHHHHHHHHHHHHHh---hCceEEE-EecchhhHHHhhhhe-EEeeCCcEeecccHH
Confidence 9999999 999999999987776665544332 2222212 249999999999999 999999999998876
No 22
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.76 E-value=7.2e-19 Score=155.78 Aligned_cols=173 Identities=23% Similarity=0.284 Sum_probs=120.6
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh------------hccC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ------------LFKP 82 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~------------~~~~ 82 (350)
+.++.+|++|++.+|+|++|+|||||++++.|+ .+|++|.|.+.|+++..+++ +||.
T Consensus 25 d~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl-----------l~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~ 93 (263)
T COG1127 25 DGVDLDVPRGEILAILGGSGSGKSTLLRLILGL-----------LRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQ 93 (263)
T ss_pred cCceeeecCCcEEEEECCCCcCHHHHHHHHhcc-----------CCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeec
Confidence 778899999999999999999999999999999 79999999999987654432 2333
Q ss_pred CCCCCcceeeeeecccccccccC--ccccc-hHHHHHHHHH-------H-----------HHHHHhhc-CCCceeeecCC
Q 018809 83 KSAVPAFLEIHDIAGLVRGAHEG--QGLGN-SFLSHIRAVD-------G-----------IFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 83 ~~~~~~~l~~~D~~g~~~~~~~~--~~~~~-~~l~~l~~~d-------~-----------~l~vv~a~-~~~~vl~ld~~ 140 (350)
......+++.|++++.-..+.. +...+ ..+..+..+. . -+.++||+ -+|+++++|
T Consensus 94 -gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~D-- 170 (263)
T COG1127 94 -GALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLD-- 170 (263)
T ss_pred -cccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEec--
Confidence 3344568899998875332221 11000 0111111110 0 04567777 799999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
||++++|++....+...+..+.+.+ ..+. .-.+|++..+..+||++ .+|.+|+++..|+..
T Consensus 171 -EPtsGLDPI~a~~~~~LI~~L~~~l---g~T~-i~VTHDl~s~~~i~Drv-~~L~~gkv~~~Gt~~ 231 (263)
T COG1127 171 -EPTSGLDPISAGVIDELIRELNDAL---GLTV-IMVTHDLDSLLTIADRV-AVLADGKVIAEGTPE 231 (263)
T ss_pred -CCCCCCCcchHHHHHHHHHHHHHhh---CCEE-EEEECChHHHHhhhceE-EEEeCCEEEEeCCHH
Confidence 9999999998655555444433322 1111 11259999999999999 999999999887654
No 23
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.75 E-value=6.1e-19 Score=160.43 Aligned_cols=219 Identities=21% Similarity=0.285 Sum_probs=135.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccccC
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~~~ 105 (350)
+++|+|+||+|||||+|+|+|....+++|||+|..|..|.+.+.|. .++++|+||+.......
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~-----------------~i~l~DtpG~~~~~~~~ 64 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGA-----------------KIQLLDLPGIIEGAADG 64 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCe-----------------EEEEEECCCcccccccc
Confidence 6899999999999999999999877899999999999999988763 48899999987765544
Q ss_pred ccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cccc-
Q 018809 106 QGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR-----SNDK- 179 (350)
Q Consensus 106 ~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~-----~~~h- 179 (350)
.++..+++..++.+|++++|+|+. ++....+.+.+++....+ ++++....+.. ++-.
T Consensus 65 ~~~~~~~l~~~~~ad~il~V~D~t------------~~~~~~~~~~~~l~~~gi-----~l~~~~~~v~~~~~~~ggi~~ 127 (233)
T cd01896 65 KGRGRQVIAVARTADLILMVLDAT------------KPEGHREILERELEGVGI-----RLNKRPPNITIKKKKKGGINI 127 (233)
T ss_pred hhHHHHHHHhhccCCEEEEEecCC------------cchhHHHHHHHHHHHcCc-----eecCCCCeEEEEEEecCCEEE
Confidence 455556666667777777766653 222233333332222221 01110000000 0000
Q ss_pred --cHHHHHHHHHHHHHHhhcCCcc-----ccCCCChhHHHHHHHhhhhhcCCcchhcccchhhhhhhcccChhHHHHHHH
Q 018809 180 --QLKIEHELCQRVKAWLQDGKDV-----RLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQ 252 (350)
Q Consensus 180 --~~~~~~~l~~~i~~~L~~g~~~-----~~~~~t~~~~e~i~~~~~~~~kp~~~~~n~~~~~~~~~~~~~~~~i~~~~~ 252 (350)
.......-.+.+..+|.+.++. ..++.|.++.+.. -...+.+.|++++.||.|..-. +++..+..
T Consensus 128 ~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~-~~~~~~y~p~iiV~NK~Dl~~~-------~~~~~~~~ 199 (233)
T cd01896 128 TSTVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDV-IEGNRVYIPCLYVYNKIDLISI-------EELDLLAR 199 (233)
T ss_pred eccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHH-HhCCceEeeEEEEEECccCCCH-------HHHHHHhc
Confidence 0000111224444555555433 2366777766432 1244678999999999874211 12223222
Q ss_pred hhCCCeEEEecHHHHHHhcCCChhHHHHHHHhcCCCCcHHHHHHHHHhhcCCceeecc
Q 018809 253 EHGGEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTA 310 (350)
Q Consensus 253 ~~~~~~~v~~sa~~e~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~l~li~~ft~ 310 (350)
...++.+||... .++++|.+.+++.|++|++||+
T Consensus 200 ---~~~~~~~SA~~g---------------------~gi~~l~~~i~~~L~~irvy~k 233 (233)
T cd01896 200 ---QPNSVVISAEKG---------------------LNLDELKERIWDKLGLIRVYTK 233 (233)
T ss_pred ---CCCEEEEcCCCC---------------------CCHHHHHHHHHHHhCcEEEecC
Confidence 234778887652 2588899999999999999995
No 24
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=1.5e-18 Score=168.59 Aligned_cols=174 Identities=23% Similarity=0.389 Sum_probs=116.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
++.=.-|||||+||||||||+|+|++.+..+++|||||+.|+.|.+.+.+. ..+.++|+||++.
T Consensus 156 lk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~----------------~~i~~vDtPGi~~ 219 (390)
T PRK12298 156 LKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE----------------RSFVVADIPGLIE 219 (390)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC----------------cEEEEEeCCCccc
Confidence 334447999999999999999999999888899999999999999988641 2488999999998
Q ss_pred ccccCccccchHHHHHHHHHHHHHHHhhcC--CCce-----ee---ecC-----CCCCC----chhHHHHHHHHHHHHHH
Q 018809 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRAFE--DPDI-----IH---VDD-----SVDPV----RDLEVISAELRLKDIEF 161 (350)
Q Consensus 101 ~~~~~~~~~~~~l~~l~~~d~~l~vv~a~~--~~~v-----l~---ld~-----~~eP~----~~ld~~~~el~~~~l~~ 161 (350)
+++.+.+++.++++.++.+|++++|+|+.. +.+. .+ +.. ...|. +.+|....+.....+..
T Consensus 220 ~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~ 299 (390)
T PRK12298 220 GASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKA 299 (390)
T ss_pred cccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHH
Confidence 888777788899999999999999998751 1110 00 000 00121 23333322221111111
Q ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcccc-CCCChhHH
Q 018809 162 MERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAADI 211 (350)
Q Consensus 162 l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~-~~~t~~~~ 211 (350)
+.+........+..| ++....+.++++.+...|++++++|+ +.+|+.+.
T Consensus 300 l~~~~~~~~~Vi~IS-A~tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~ 349 (390)
T PRK12298 300 IVEALGWEGPVYLIS-AASGLGVKELCWDLMTFIEENPREEAEEAEAPEKV 349 (390)
T ss_pred HHHHhCCCCCEEEEE-CCCCcCHHHHHHHHHHHhhhCcccCCcccccCccH
Confidence 111100000122233 48888999999999999999988777 56666553
No 25
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.74 E-value=5.3e-19 Score=165.94 Aligned_cols=175 Identities=19% Similarity=0.239 Sum_probs=114.1
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH----HHh--hccCC-C
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LCQ--LFKPK-S 84 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~----l~~--~~~~~-~ 84 (350)
+.-++++..+++|+++||+||||||||||+|+|+|. ..|++|.|.+.|.+... ... .|.++ .
T Consensus 19 ~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl-----------~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~ 87 (293)
T COG1131 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL-----------LKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEP 87 (293)
T ss_pred EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEEcCEeCccCHHHHHhheEEEccCC
Confidence 345789999999999999999999999999999999 68999999999865432 111 23332 2
Q ss_pred CCCcceeeeeecccccccccCc-----cccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCC
Q 018809 85 AVPAFLEIHDIAGLVRGAHEGQ-----GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~~-----~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~ 144 (350)
..+..+++.++..+....+... ...+..++.+...+ .-+.++.++ .+|++++|| ||+
T Consensus 88 ~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLD---EPt 164 (293)
T COG1131 88 SLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILD---EPT 164 (293)
T ss_pred CCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEEC---CCC
Confidence 3445566555544432211100 00111111111110 013455555 699999999 999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 145 ~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+++|+.....+...+..+.+. -..++..+ +|.+.+++.+||+| .+|.+|++++.++
T Consensus 165 ~GLDp~~~~~~~~~l~~l~~~---g~~tvlis-sH~l~e~~~~~d~v-~il~~G~~~~~g~ 220 (293)
T COG1131 165 SGLDPESRREIWELLRELAKE---GGVTILLS-THILEEAEELCDRV-IILNDGKIIAEGT 220 (293)
T ss_pred cCCCHHHHHHHHHHHHHHHhC---CCcEEEEe-CCcHHHHHHhCCEE-EEEeCCEEEEeCC
Confidence 999999975555554333221 00123234 49999999999999 9999999998874
No 26
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=7.1e-19 Score=160.98 Aligned_cols=176 Identities=18% Similarity=0.269 Sum_probs=119.6
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH------------hh
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------------QL 79 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~------------~~ 79 (350)
++-++++..|+.|+++||||++|||||||++++.++ -+|++|.|.++|.++..+. .+
T Consensus 20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L-----------e~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMI 88 (339)
T COG1135 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL-----------ERPTSGSVFVDGQDLTALSEAELRQLRQKIGMI 88 (339)
T ss_pred eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc-----------CCCCCceEEEcCEecccCChHHHHHHHhhccEE
Confidence 456889999999999999999999999999999999 5899999999997653322 13
Q ss_pred ccCCCCCCcceeeeeeccccccccc--Cccc---cchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecC
Q 018809 80 FKPKSAVPAFLEIHDIAGLVRGAHE--GQGL---GNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 80 ~~~~~~~~~~l~~~D~~g~~~~~~~--~~~~---~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~ 139 (350)
|+..+. -...++.++..+.-.... .... ....++.+...|-. +.++||+ .+|++++.|
T Consensus 89 FQhFnL-LssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~D- 166 (339)
T COG1135 89 FQHFNL-LSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCD- 166 (339)
T ss_pred eccccc-cccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEec-
Confidence 332222 223455555554321110 0001 11111111111111 5688888 899999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
||++.+|+-...-++..+..+.+.+. -++ .--+|.++-+..+|+|+ .+|++|+++-.|++.
T Consensus 167 --EaTSALDP~TT~sIL~LL~~In~~lg---lTI-vlITHEm~Vvk~ic~rV-avm~~G~lvE~G~v~ 227 (339)
T COG1135 167 --EATSALDPETTQSILELLKDINRELG---LTI-VLITHEMEVVKRICDRV-AVLDQGRLVEEGTVS 227 (339)
T ss_pred --CccccCChHHHHHHHHHHHHHHHHcC---CEE-EEEechHHHHHHHhhhh-eEeeCCEEEEeccHH
Confidence 99999999988777766655554432 111 11149999999999999 999999998776654
No 27
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.73 E-value=3.8e-18 Score=157.86 Aligned_cols=115 Identities=34% Similarity=0.568 Sum_probs=95.0
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeee
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D 94 (350)
+.+..+++-=.-+||||.||||||||+++++..+..+++|||||+.|+-|.|.+.+. ..+.+.|
T Consensus 150 r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~----------------~sfv~AD 213 (369)
T COG0536 150 RDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG----------------ESFVVAD 213 (369)
T ss_pred EEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC----------------CcEEEec
Confidence 333334444446899999999999999999999999999999999999999998543 3488999
Q ss_pred ecccccccccCccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHH
Q 018809 95 IAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISA 152 (350)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~ 152 (350)
.||++.+++.+.+++.+|++++..+.+++||+|+.... ..||..++..+..
T Consensus 214 IPGLIEGAs~G~GLG~~FLrHIERt~vL~hviD~s~~~-------~~dp~~~~~~i~~ 264 (369)
T COG0536 214 IPGLIEGASEGVGLGLRFLRHIERTRVLLHVIDLSPID-------GRDPIEDYQTIRN 264 (369)
T ss_pred CcccccccccCCCccHHHHHHHHhhheeEEEEecCccc-------CCCHHHHHHHHHH
Confidence 99999999999999999999999999999999986321 1367666555554
No 28
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=2.9e-18 Score=153.47 Aligned_cols=166 Identities=19% Similarity=0.252 Sum_probs=114.9
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH----HHhhccCCCCCCc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LCQLFKPKSAVPA 88 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~----l~~~~~~~~~~~~ 88 (350)
.=.+++.++..|++++||||+|||||||||+++|+ .+|++|.|.++|+.+.. .+.+||....+|
T Consensus 18 vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL-----------~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlP- 85 (248)
T COG1116 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL-----------EKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLP- 85 (248)
T ss_pred EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCcccCCCCCCEEEEeccCcccc-
Confidence 34678899999999999999999999999999999 68999999999976522 223455555545
Q ss_pred ceeeeeeccccccccc---C--ccccchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecCCCCCCchhH
Q 018809 89 FLEIHDIAGLVRGAHE---G--QGLGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (350)
Q Consensus 89 ~l~~~D~~g~~~~~~~---~--~~~~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (350)
+.++.|++.+.-.... . ......+++.+...+.. +.++||+ .+|+++.+| ||+..+|
T Consensus 86 W~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlD---EPFgALD 162 (248)
T COG1116 86 WLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLD---EPFGALD 162 (248)
T ss_pred hhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEc---CCcchhh
Confidence 5788888777533211 0 01111111111111111 5677887 899999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcC
Q 018809 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (350)
Q Consensus 149 ~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g 198 (350)
.++++.....+ .+.|++...++.. .||+.++.-.+.||| -+|..+
T Consensus 163 alTR~~lq~~l---~~lw~~~~~Tvll-VTHdi~EAv~LsdRi-vvl~~~ 207 (248)
T COG1116 163 ALTREELQDEL---LRLWEETRKTVLL-VTHDVDEAVYLADRV-VVLSNR 207 (248)
T ss_pred HHHHHHHHHHH---HHHHHhhCCEEEE-EeCCHHHHHhhhCEE-EEecCC
Confidence 99987776664 3344443333212 259999999999999 777664
No 29
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.7e-17 Score=146.74 Aligned_cols=183 Identities=22% Similarity=0.275 Sum_probs=126.2
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH------------Hhh
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------------CQL 79 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l------------~~~ 79 (350)
++-..++.+|+.|+.++|||++|||||||+++|.|+ .+|+.|.|.++|.++..+ ..+
T Consensus 18 ~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl-----------~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmI 86 (258)
T COG3638 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL-----------VDPTSGEILFNGVQITKLKGKELRKLRRDIGMI 86 (258)
T ss_pred eeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc-----------cCCCcceEEecccchhccchHHHHHHHHhceeE
Confidence 455789999999999999999999999999999998 799999999998654321 123
Q ss_pred ccCCCCCCcceeeeeecccccccccC--c---ccc-----chHHHHHHHHHHH-----------------HHHHhhc-CC
Q 018809 80 FKPKSAVPAFLEIHDIAGLVRGAHEG--Q---GLG-----NSFLSHIRAVDGI-----------------FHVLRAF-ED 131 (350)
Q Consensus 80 ~~~~~~~~~~l~~~D~~g~~~~~~~~--~---~~~-----~~~l~~l~~~d~~-----------------l~vv~a~-~~ 131 (350)
|+....++ .+.++.++-.+...+.. . ++. ...++.+...+.+ +.++|++ ++
T Consensus 87 fQ~~nLv~-r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~ 165 (258)
T COG3638 87 FQQFNLVP-RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQ 165 (258)
T ss_pred eccCCccc-ccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcC
Confidence 44444433 45666665554333221 0 010 1112222222222 6688998 99
Q ss_pred CceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCChhHH
Q 018809 132 PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADI 211 (350)
Q Consensus 132 ~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t~~~~ 211 (350)
|+++.-| ||+..+|+.+...++..+..+.+.- ..++..+ -|+.+-..+.|+|+ .-|.+|+++++++..+-..
T Consensus 166 pkiILAD---EPvasLDp~~a~~Vm~~l~~in~~~---g~Tvi~n-LH~vdlA~~Y~~Ri-igl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 166 PKIILAD---EPVASLDPESAKKVMDILKDINQED---GITVIVN-LHQVDLAKKYADRI-IGLKAGRIVFDGPASELTD 237 (258)
T ss_pred CCEEecC---CcccccChhhHHHHHHHHHHHHHHc---CCEEEEE-echHHHHHHHHhhh-eEecCCcEEEeCChhhhhH
Confidence 9999999 9999999999888877765544321 1122122 29999999999999 8899999999987664433
Q ss_pred HHH
Q 018809 212 EIL 214 (350)
Q Consensus 212 e~i 214 (350)
+.+
T Consensus 238 ~~~ 240 (258)
T COG3638 238 EAL 240 (258)
T ss_pred HHH
Confidence 433
No 30
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.72 E-value=3.5e-18 Score=161.90 Aligned_cols=175 Identities=15% Similarity=0.231 Sum_probs=124.6
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-------hhccCCC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKS 84 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-------~~~~~~~ 84 (350)
++-+.++..|.+|++++|+||+||||||++++|+|. ..|++|.|.++|+++..++ .+||.-.
T Consensus 19 ~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf-----------e~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YA 87 (352)
T COG3842 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF-----------EQPSSGEILLDGEDITDVPPEKRPIGMVFQSYA 87 (352)
T ss_pred eEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCChhhcccceeecCcc
Confidence 445788999999999999999999999999999999 5899999999998876543 2444444
Q ss_pred CCCcceeeeeecccccccccC---c---cccchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecCCCCC
Q 018809 85 AVPAFLEIHDIAGLVRGAHEG---Q---GLGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVDP 143 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~---~---~~~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~~~eP 143 (350)
.+| ++++.|+.+++-..... . ....++++.++..+.. +.++||+ .+|+++.+| ||
T Consensus 88 LFP-HltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLD---EP 163 (352)
T COG3842 88 LFP-HMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLD---EP 163 (352)
T ss_pred cCC-CCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhc---Cc
Confidence 444 89999999887541110 1 1112222222222111 6688888 899999999 99
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 144 ~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
++.+|.--++.....+..+.+.+ ..+. .-.+|+.++...+.||| .+|++|++...++.
T Consensus 164 lSaLD~kLR~~mr~Elk~lq~~~---giT~-i~VTHDqeEAl~msDrI-~Vm~~G~I~Q~gtP 221 (352)
T COG3842 164 LSALDAKLREQMRKELKELQREL---GITF-VYVTHDQEEALAMSDRI-AVMNDGRIEQVGTP 221 (352)
T ss_pred ccchhHHHHHHHHHHHHHHHHhc---CCeE-EEEECCHHHHhhhccce-EEccCCceeecCCH
Confidence 99999877655555544433322 1111 12259999999999999 99999998766543
No 31
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.72 E-value=2.2e-18 Score=153.74 Aligned_cols=174 Identities=18% Similarity=0.247 Sum_probs=120.4
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH---------HhhccC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------CQLFKP 82 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l---------~~~~~~ 82 (350)
.+-+.++..|..|+++++|||+||||||+++++.++ ++|++|.|.++|+++..+ ....++
T Consensus 15 ~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL-----------iept~G~I~i~g~~i~~~d~~~LRr~IGYviQq 83 (309)
T COG1125 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL-----------IEPTSGEILIDGEDISDLDPVELRRKIGYVIQQ 83 (309)
T ss_pred eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc-----------cCCCCceEEECCeecccCCHHHHHHhhhhhhhh
Confidence 345788999999999999999999999999999999 799999999999865431 112232
Q ss_pred CCCCCcceeeeeeccccccccc--CccccchHHHHHHHHHH-------------------HHHHHhhc-CCCceeeecCC
Q 018809 83 KSAVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDG-------------------IFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 83 ~~~~~~~l~~~D~~g~~~~~~~--~~~~~~~~l~~l~~~d~-------------------~l~vv~a~-~~~~vl~ld~~ 140 (350)
...+ .++++.++..+.....+ ......+..+.+..+++ -+-|+||+ .+|.++.+|
T Consensus 84 igLF-Ph~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMD-- 160 (309)
T COG1125 84 IGLF-PHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD-- 160 (309)
T ss_pred cccC-CCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeec--
Confidence 2233 36677776665533221 00011111111111110 15688888 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|+++...+..++..+.+.+ .+++..- +|++++...|.||| .+|.+|+++..++
T Consensus 161 -EPFgALDpI~R~~lQ~e~~~lq~~l---~kTivfV-THDidEA~kLadri-~vm~~G~i~Q~~~ 219 (309)
T COG1125 161 -EPFGALDPITRKQLQEEIKELQKEL---GKTIVFV-THDIDEALKLADRI-AVMDAGEIVQYDT 219 (309)
T ss_pred -CCccccChhhHHHHHHHHHHHHHHh---CCEEEEE-ecCHHHHHhhhceE-EEecCCeEEEeCC
Confidence 9999999999877776665554433 2222222 59999999999999 9999999876543
No 32
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.71 E-value=2.6e-18 Score=162.45 Aligned_cols=174 Identities=16% Similarity=0.251 Sum_probs=114.3
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH----h--hccCCC-C
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----Q--LFKPKS-A 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~----~--~~~~~~-~ 85 (350)
.-+.++.++++|+++||+||||||||||+++|+|. .+|++|.|.++|.++.... . .|.++. .
T Consensus 22 ~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl-----------~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~ 90 (306)
T PRK13537 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL-----------THPDAGSISLCGEPVPSRARHARQRVGVVPQFDN 90 (306)
T ss_pred EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEecccchHHHHhcEEEEeccCc
Confidence 44788999999999999999999999999999999 6899999999987653211 1 222332 3
Q ss_pred CCcceeeeeeccccccccc-C-c---cccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCc
Q 018809 86 VPAFLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~-~-~---~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~ 145 (350)
.+..+++.|+..+....+. . . .....+++.++..+ .-+.+++|+ .+|+++++| ||++
T Consensus 91 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLD---EPt~ 167 (306)
T PRK13537 91 LDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLD---EPTT 167 (306)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEe---CCCc
Confidence 3344566665543211110 0 0 00001111111000 115577777 899999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 146 ~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
++|+.....++..+..+.+ -...+..+ +|++.+++.+||++ .+|++|+++..++.
T Consensus 168 gLD~~~~~~l~~~l~~l~~----~g~till~-sH~l~e~~~~~d~i-~il~~G~i~~~g~~ 222 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLA----RGKTILLT-THFMEEAERLCDRL-CVIEEGRKIAEGAP 222 (306)
T ss_pred CCCHHHHHHHHHHHHHHHh----CCCEEEEE-CCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 9999997665555433311 11222223 49999999999999 99999999877653
No 33
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.71 E-value=2.7e-18 Score=161.88 Aligned_cols=172 Identities=15% Similarity=0.193 Sum_probs=121.1
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-------hhccCCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-------~~~~~~~~~ 86 (350)
-++++..+..|++++|+||+|||||||+|+|+|+ .+|++|.|.++|+++..+. .+||.-..
T Consensus 19 l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL-----------e~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yAL- 86 (338)
T COG3839 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL-----------EEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYAL- 86 (338)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCChhHCCEEEEeCCccc-
Confidence 3568889999999999999999999999999999 6899999999998775532 24444434
Q ss_pred CcceeeeeecccccccccC-----ccccchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecCCCCCCch
Q 018809 87 PAFLEIHDIAGLVRGAHEG-----QGLGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVDPVRD 146 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~~-----~~~~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~~~eP~~~ 146 (350)
+.+|++.|+.++.-...+. ....+...+.++..+.+ +.+.||+ .+|+++.+| ||++.
T Consensus 87 yPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~D---EPlSn 163 (338)
T COG3839 87 YPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLD---EPLSN 163 (338)
T ss_pred cCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEec---CchhH
Confidence 4589999999886433210 01111111222222222 5677887 899999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 147 ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+|...+......+..+.+++ ..+. .-.+|+..+...+.||| .+|.+|++...++
T Consensus 164 LDa~lR~~mr~ei~~lh~~l---~~T~-IYVTHDq~EAmtladri-~Vm~~G~i~Q~g~ 217 (338)
T COG3839 164 LDAKLRVLMRSEIKKLHERL---GTTT-IYVTHDQVEAMTLADRI-VVMNDGRIQQVGT 217 (338)
T ss_pred hhHHHHHHHHHHHHHHHHhc---CCcE-EEEcCCHHHHHhhCCEE-EEEeCCeeeecCC
Confidence 99887766655544443332 1111 12259999999999999 8999998876554
No 34
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.70 E-value=2.5e-17 Score=143.97 Aligned_cols=169 Identities=20% Similarity=0.275 Sum_probs=116.5
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchh------HHH----hhccCCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE------WLC----QLFKPKS 84 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~------~l~----~~~~~~~ 84 (350)
+.++.++..|++++||||+|||||||++||.++ -.|++|.|.++|..+. .+. .+|+.-+
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~L-----------E~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fn 87 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGL-----------EEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFN 87 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHHHCC-----------cCCCCceEEECCEeccchhhHHHHHHhcCeeccccc
Confidence 678889999999999999999999999999999 5899999999996432 121 2344444
Q ss_pred CCCcceeeeeecccccccccC------ccccchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecCCCCC
Q 018809 85 AVPAFLEIHDIAGLVRGAHEG------QGLGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVDP 143 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~------~~~~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~~~eP 143 (350)
.+ .++++.++.-+..-..++ +......++.+..+|.. +.++||+ .+|+++..| ||
T Consensus 88 LF-PHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD---EP 163 (240)
T COG1126 88 LF-PHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD---EP 163 (240)
T ss_pred cc-ccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec---CC
Confidence 44 478888887665322221 12233344444444433 6788998 899999999 99
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 144 ~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
++.+|+.--...+..+..+.+ -..+. .-.+|.+....++.||+ .++++|+++-.+
T Consensus 164 TSALDPElv~EVL~vm~~LA~----eGmTM-ivVTHEM~FAr~Vadrv-iFmd~G~iie~g 218 (240)
T COG1126 164 TSALDPELVGEVLDVMKDLAE----EGMTM-IIVTHEMGFAREVADRV-IFMDQGKIIEEG 218 (240)
T ss_pred cccCCHHHHHHHHHHHHHHHH----cCCeE-EEEechhHHHHHhhheE-EEeeCCEEEEec
Confidence 999998653333332222211 11111 11259999999999999 999999877554
No 35
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.70 E-value=3.3e-18 Score=163.77 Aligned_cols=174 Identities=16% Similarity=0.213 Sum_probs=113.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH----Hh--hccCCC-C
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQ--LFKPKS-A 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l----~~--~~~~~~-~ 85 (350)
.-+++++++.+|+++||+||||||||||+++|+|. .+|++|.|.++|.++... .. .|.++. .
T Consensus 56 ~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl-----------~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~ 124 (340)
T PRK13536 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM-----------TSPDAGKITVLGVPVPARARLARARIGVVPQFDN 124 (340)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCceEEEECCEECCcchHHHhccEEEEeCCcc
Confidence 34788899999999999999999999999999999 689999999999764321 11 122222 2
Q ss_pred CCcceeeeeecccccccccCc-----cccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCc
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQ-----GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~-----~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~ 145 (350)
.+..+++.|+..+....+... .....+++.++..+ .-+.+++++ .+|+++++| ||++
T Consensus 125 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLD---EPt~ 201 (340)
T PRK13536 125 LDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILD---EPTT 201 (340)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCCC
Confidence 333455555543321111000 00001111111100 115577777 799999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 146 ~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
++|+.....++..+..+.+ -...+..+ +|++.+++.+||++ .+|.+|+++..++.
T Consensus 202 gLD~~~r~~l~~~l~~l~~----~g~tilis-SH~l~e~~~~~d~i-~il~~G~i~~~g~~ 256 (340)
T PRK13536 202 GLDPHARHLIWERLRSLLA----RGKTILLT-THFMEEAERLCDRL-CVLEAGRKIAEGRP 256 (340)
T ss_pred CCCHHHHHHHHHHHHHHHh----CCCEEEEE-CCCHHHHHHhCCEE-EEEECCEEEEEcCH
Confidence 9999997666555433321 11222233 49999999999999 89999999877654
No 36
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.7e-17 Score=151.67 Aligned_cols=175 Identities=17% Similarity=0.219 Sum_probs=117.3
Q ss_pred CCCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCc---chhHHHh-------hc
Q 018809 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE---RFEWLCQ-------LF 80 (350)
Q Consensus 11 ~~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~---~l~~l~~-------~~ 80 (350)
+++-..++..|+.|+.++|+||||||||||+++|+|+ ..|+.|.|.++|+ +...+.. .|
T Consensus 15 ~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGL-----------e~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvF 83 (345)
T COG1118 15 FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGL-----------ETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVF 83 (345)
T ss_pred ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCc-----------CCCCCceEEECCEeccchhccchhhcceeEEE
Confidence 3455689999999999999999999999999999999 6899999999998 4333211 22
Q ss_pred cCCCCCCcceeeeeecccccccccC----ccccchHHHHHHHHHHH-----------------HHHHhhc-CCCceeeec
Q 018809 81 KPKSAVPAFLEIHDIAGLVRGAHEG----QGLGNSFLSHIRAVDGI-----------------FHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 81 ~~~~~~~~~l~~~D~~g~~~~~~~~----~~~~~~~l~~l~~~d~~-----------------l~vv~a~-~~~~vl~ld 138 (350)
+.-. ...+|++.|+..++....+. .....+..+.++.+.+- +.++||+ -+|+++.||
T Consensus 84 Q~YA-LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLD 162 (345)
T COG1118 84 QHYA-LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 162 (345)
T ss_pred echh-hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeec
Confidence 2222 34478999998887432211 11112222222222211 6688888 899999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||+..+|.--...+...+. +..+++.-.. .-.+|+.+++.+++|++ -.|++|++...++
T Consensus 163 ---EPf~ALDa~vr~~lr~wLr---~~~~~~~~tt-vfVTHD~eea~~ladrv-vvl~~G~Ieqvg~ 221 (345)
T COG1118 163 ---EPFGALDAKVRKELRRWLR---KLHDRLGVTT-VFVTHDQEEALELADRV-VVLNQGRIEQVGP 221 (345)
T ss_pred ---CCchhhhHHHHHHHHHHHH---HHHHhhCceE-EEEeCCHHHHHhhcceE-EEecCCeeeeeCC
Confidence 9999999855433322222 2222221111 01149999999999999 9999998765554
No 37
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=1.2e-18 Score=150.28 Aligned_cols=173 Identities=20% Similarity=0.321 Sum_probs=116.5
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh--------hccCCC-C
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--------LFKPKS-A 85 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~--------~~~~~~-~ 85 (350)
+.++.++++|+++||+|||||||||.|.+++|+ ..|++|.|.++|.++..++. .|-||. .
T Consensus 21 ~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Gl-----------v~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~S 89 (243)
T COG1137 21 NDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL-----------VRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEAS 89 (243)
T ss_pred eeeeEEEcCCcEEEEECCCCCCceeEEEEEEEE-----------EecCCceEEECCcccccCChHHHhhcCcccccccch
Confidence 667889999999999999999999999999999 79999999999988765433 355543 4
Q ss_pred CCcceeeeeeccccccccc-Ccc------ccchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecCCCCC
Q 018809 86 VPAFLEIHDIAGLVRGAHE-GQG------LGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVDP 143 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~-~~~------~~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~~~eP 143 (350)
+...+++.|+....-.... ... ..+..++.++...+- +.++|++ .+|..+.|| ||
T Consensus 90 IFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLD---EP 166 (243)
T COG1137 90 IFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLD---EP 166 (243)
T ss_pred HhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEec---CC
Confidence 5556777777655422211 100 011111111111111 5688888 899999999 99
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 144 ~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
+.++|++.- .+++.+.+.+....--+ .-+.|+-.+...+|||+ .++.+|+++..|+..
T Consensus 167 FAGVDPiaV----~dIq~iI~~L~~rgiGv-LITDHNVREtL~i~dRa-YIi~~G~vla~G~p~ 224 (243)
T COG1137 167 FAGVDPIAV----IDIQRIIKHLKDRGIGV-LITDHNVRETLDICDRA-YIISDGKVLAEGSPE 224 (243)
T ss_pred ccCCCchhH----HHHHHHHHHHHhCCceE-EEccccHHHHHhhhheE-EEEecCeEEecCCHH
Confidence 999999873 23322222221110000 01249999999999999 889999999887643
No 38
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.67 E-value=1.3e-17 Score=157.45 Aligned_cols=174 Identities=15% Similarity=0.225 Sum_probs=111.5
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH----HHh--hccCCC-C
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LCQ--LFKPKS-A 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~----l~~--~~~~~~-~ 85 (350)
.-.+++..+++|+++||+||||||||||+++|+|. .+|++|.|.++|.++.. ... .|.++. .
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~ 76 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTL-----------LRPTSGTARVAGYDVVREPRKVRRSIGIVPQYAS 76 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEcccCHHHHHhhcEEecCCCC
Confidence 44678899999999999999999999999999999 68999999999875422 111 122322 2
Q ss_pred CCcceeeeeeccccccccc-C----ccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCc
Q 018809 86 VPAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~-~----~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~ 145 (350)
.+..+++.++..+...... . ......+++.+...+ .-+.+++|+ .+|+++++| ||++
T Consensus 77 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~ 153 (302)
T TIGR01188 77 VDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLD---EPTT 153 (302)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCc
Confidence 3334455554432211000 0 000011111111110 015577777 899999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 146 ~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
++|+.....+...+..+.+ -...+... +|++..+..+||++ .+|.+|+++..++.
T Consensus 154 gLD~~~~~~l~~~l~~~~~----~g~tvi~~-sH~~~~~~~~~d~v-~~l~~G~i~~~g~~ 208 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKE----EGVTILLT-THYMEEADKLCDRI-AIIDHGRIIAEGTP 208 (302)
T ss_pred CCCHHHHHHHHHHHHHHHh----CCCEEEEE-CCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 9999987665554433211 11122122 49999999999999 89999998876543
No 39
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.67 E-value=3e-17 Score=152.61 Aligned_cols=194 Identities=19% Similarity=0.097 Sum_probs=126.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~~ 104 (350)
+++|+|+||||||||+|+|+|.+..+ +++|+||+.+..|.....+ .++.++||||+....+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~-----------------~qii~vDTPG~~~~~~~ 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA-----------------SQIIFIDTPGFHEKKHS 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC-----------------cEEEEEECcCCCCCcch
Confidence 68999999999999999999998754 8999999998888765443 35889999999765322
Q ss_pred -CccccchHHHHHHHHHHHHHHHhhcCCCce----e-eecCCCCCC----chhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018809 105 -GQGLGNSFLSHIRAVDGIFHVLRAFEDPDI----I-HVDDSVDPV----RDLEVISAELRLKDIEFMERRIEDVEKSMK 174 (350)
Q Consensus 105 -~~~~~~~~l~~l~~~d~~l~vv~a~~~~~v----l-~ld~~~eP~----~~ld~~~~el~~~~l~~l~~~~~~~~~~~~ 174 (350)
...+...+...++.+|++++|+|+...... + .+....-|. +..|..+.+........+.+.. .+...+.
T Consensus 65 l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~-~~~~v~~ 143 (270)
T TIGR00436 65 LNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILE-DFKDIVP 143 (270)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhc-CCCceEE
Confidence 112233445667888888888887532110 0 011111121 2333332222211111111110 0112222
Q ss_pred hcccccHHHHHHHHHHHHHHhhcCCcccc-CCCChhH-----HHHHHHh-hhhhcCCcchhcccchhhhhh
Q 018809 175 RSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IEILNTF-QLLTAKPVVYLVNMNEKDYQR 238 (350)
Q Consensus 175 ~~~~h~~~~~~~l~~~i~~~L~~g~~~~~-~~~t~~~-----~e~i~~~-~~~~~kp~~~~~n~~~~~~~~ 238 (350)
.| +....+++++.+.+...++.|+++++ +..|+.+ .|++|+. +..+++++||.+.+..+.+..
T Consensus 144 iS-A~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~~~ 213 (270)
T TIGR00436 144 IS-ALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERKSF 213 (270)
T ss_pred Ee-cCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEE
Confidence 33 36677889999999999999998877 5567654 3789999 678999999999988777743
No 40
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=7.9e-17 Score=140.24 Aligned_cols=166 Identities=16% Similarity=0.267 Sum_probs=114.9
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h---hccCCCCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q---LFKPKSAV 86 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~---~~~~~~~~ 86 (350)
+.++..+++|+..+|+||||||||||++.|+|. ..|.+|.+.++|..+..+. . +..++..+
T Consensus 18 ~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe-----------l~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~l 86 (259)
T COG4559 18 DGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE-----------LSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSL 86 (259)
T ss_pred cCcceeccCCcEEEEECCCCccHHHHHHHhhCc-----------cCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCccc
Confidence 567888999999999999999999999999999 7899999999998765432 1 22333344
Q ss_pred CcceeeeeecccccccccCccc--cch--HHHHHHHHHHH-----------------HHHHhhc-------CCCceeeec
Q 018809 87 PAFLEIHDIAGLVRGAHEGQGL--GNS--FLSHIRAVDGI-----------------FHVLRAF-------EDPDIIHVD 138 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~~~~~--~~~--~l~~l~~~d~~-----------------l~vv~a~-------~~~~vl~ld 138 (350)
-+.+++.|++.++.-++..... ... ..+.+..+|+. ++++|.+ .++.+++||
T Consensus 87 aFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LD 166 (259)
T COG4559 87 AFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLD 166 (259)
T ss_pred ccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEec
Confidence 4567888888887655532111 001 12222333332 4444443 334588999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~-----~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|+..+...+.....+.+ .+. -|++......||+| .+|.+|+++..|.
T Consensus 167 ---EPtsaLDi~HQ~~tl~laR~la~----------~g~~V~~VLHDLNLAA~YaDri-vll~~Grv~a~g~ 224 (259)
T COG4559 167 ---EPTSALDIAHQHHTLRLARQLAR----------EGGAVLAVLHDLNLAAQYADRI-VLLHQGRVIASGS 224 (259)
T ss_pred ---CCccccchHHHHHHHHHHHHHHh----------cCCcEEEEEccchHHHHhhhee-eeeeCCeEeecCC
Confidence 99999999987555544333222 121 19999999999999 9999999987654
No 41
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.66 E-value=7.9e-18 Score=161.08 Aligned_cols=174 Identities=16% Similarity=0.239 Sum_probs=114.3
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--------Hh--hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQ--LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------~~--~~~~ 82 (350)
.-.++++++.+|+++||+|+||||||||+++|+|+ .+|++|.|.++|.++..+ .. .|.+
T Consensus 20 ~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl-----------~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~ 88 (343)
T TIGR02314 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-----------ERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIF 88 (343)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHHHhcCEEEEE
Confidence 45788899999999999999999999999999999 689999999999765321 11 1111
Q ss_pred C-CCCCcceeeeeeccccccccc--Cccc---cchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecCCC
Q 018809 83 K-SAVPAFLEIHDIAGLVRGAHE--GQGL---GNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 83 ~-~~~~~~l~~~D~~g~~~~~~~--~~~~---~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~~~ 141 (350)
+ .......++.|+..+...... .... ...+++.+...+.. +.+++|+ .+|+++++|
T Consensus 89 Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlD--- 165 (343)
T TIGR02314 89 QHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD--- 165 (343)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---
Confidence 2 122223456565543211100 0000 01111111111111 5678888 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|......++..+..+.+. ....+... +|+++.+.++||++ .+|++|+++..++
T Consensus 166 EPts~LD~~t~~~i~~lL~~l~~~---~g~tiili-TH~~~~v~~~~d~v-~vl~~G~iv~~g~ 224 (343)
T TIGR02314 166 EATSALDPATTQSILELLKEINRR---LGLTILLI-THEMDVVKRICDCV-AVISNGELIEQGT 224 (343)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHh---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 999999999987666665443321 11122122 49999999999999 8999999886654
No 42
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=8.7e-17 Score=138.50 Aligned_cols=175 Identities=17% Similarity=0.249 Sum_probs=123.6
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh---hccCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ---LFKPKSA 85 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~---~~~~~~~ 85 (350)
-..++.+++.|.+.+||||||||||||+.+++.+ +++++|.|.++|.++.. +++ +..+...
T Consensus 17 l~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL-----------~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~ 85 (252)
T COG4604 17 LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRL-----------LKKDSGEITIDGLELTSTPSKELAKKLSILKQENH 85 (252)
T ss_pred eccceeeecCCceeEEECCCCccHHHHHHHHHHh-----------ccccCceEEEeeeecccCChHHHHHHHHHHHhhch
Confidence 3678889999999999999999999999999999 78999999999976532 332 4555666
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHH-------HHH--------------HHHHhhc-CCCceeeecCCCCC
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV-------DGI--------------FHVLRAF-EDPDIIHVDDSVDP 143 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~-------d~~--------------l~vv~a~-~~~~vl~ld~~~eP 143 (350)
+...+++.|+++|++.++..-.+...-...+..+ |+- .+++-.+ ++.|.++|| ||
T Consensus 86 i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLD---EP 162 (252)
T COG4604 86 INSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLD---EP 162 (252)
T ss_pred hhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEec---Cc
Confidence 6677999999999987764222221111111111 110 3344445 788999999 99
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 144 ~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
++.+|+...-.++..++.+.+. +.+++.. .-|+........|.| ..|.+|+.+..|..+
T Consensus 163 LNNLDmkHsv~iMk~Lrrla~e---l~Ktivi-VlHDINfAS~YsD~I-VAlK~G~vv~~G~~~ 221 (252)
T COG4604 163 LNNLDMKHSVQIMKILRRLADE---LGKTIVV-VLHDINFASCYSDHI-VALKNGKVVKQGSPD 221 (252)
T ss_pred ccccchHHHHHHHHHHHHHHHH---hCCeEEE-EEecccHHHhhhhhe-eeecCCEEEecCCHH
Confidence 9999998876665554433333 2222211 129998888889999 889999999887643
No 43
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.66 E-value=1.8e-17 Score=156.40 Aligned_cols=174 Identities=16% Similarity=0.213 Sum_probs=113.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH----HHh--hccCCC-C
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LCQ--LFKPKS-A 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~----l~~--~~~~~~-~ 85 (350)
.-+++++.+++|+++||+||||||||||+++|+|. .+|++|.|.++|.++.. ... .|.++. .
T Consensus 17 ~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl-----------~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~ 85 (301)
T TIGR03522 17 ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY-----------LPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNP 85 (301)
T ss_pred EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEcccChHHHHhceEEecCCCC
Confidence 44778899999999999999999999999999999 68999999999976532 111 233332 3
Q ss_pred CCcceeeeeeccccccccc-C----ccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCc
Q 018809 86 VPAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~-~----~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~ 145 (350)
.+..+++.|+..+...... . .......++.+...+ .-+.+++++ .+|+++++| ||++
T Consensus 86 l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD---EPt~ 162 (301)
T TIGR03522 86 LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD---EPTT 162 (301)
T ss_pred CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcc
Confidence 3444555555432211100 0 000011111110000 015567777 899999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 146 ~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
++|+...+.+...+..+. + ...+... +|++.++.++|+++ .+|++|+++..++.+
T Consensus 163 gLD~~~~~~l~~~l~~~~----~-~~tiii~-sH~l~~~~~~~d~i-~~l~~G~i~~~g~~~ 217 (301)
T TIGR03522 163 GLDPNQLVEIRNVIKNIG----K-DKTIILS-THIMQEVEAICDRV-IIINKGKIVADKKLD 217 (301)
T ss_pred cCCHHHHHHHHHHHHHhc----C-CCEEEEE-cCCHHHHHHhCCEE-EEEECCEEEEeCCHH
Confidence 999998766555543321 1 1222223 49999999999999 999999998776543
No 44
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=4.6e-17 Score=148.20 Aligned_cols=174 Identities=21% Similarity=0.236 Sum_probs=110.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--------Hh--hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQ--LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------~~--~~~~ 82 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++... .. .|.+
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~ 83 (235)
T cd03261 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL-----------LRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLF 83 (235)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccChhhHHHHhcceEEEc
Confidence 34678899999999999999999999999999999 689999999998654321 11 1222
Q ss_pred CC-CCCcceeeeeecccccccccC---cc---ccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCC
Q 018809 83 KS-AVPAFLEIHDIAGLVRGAHEG---QG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 83 ~~-~~~~~l~~~D~~g~~~~~~~~---~~---~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~ 140 (350)
+. .....+++.|+..+....... .. .....++.+...+ .-+.+++++ .+|+++++|
T Consensus 84 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllD-- 161 (235)
T cd03261 84 QSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYD-- 161 (235)
T ss_pred cCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEec--
Confidence 22 222234555554332110000 00 0001111111100 115677777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+. ....+... +|+...+..+||++ .+|++|+++..++
T Consensus 162 -EPt~~LD~~~~~~l~~~l~~~~~~---~~~tvi~v-sH~~~~~~~~~d~v-~~l~~G~i~~~g~ 220 (235)
T cd03261 162 -EPTAGLDPIASGVIDDLIRSLKKE---LGLTSIMV-THDLDTAFAIADRI-AVLYDGKIVAEGT 220 (235)
T ss_pred -CCcccCCHHHHHHHHHHHHHHHHh---cCcEEEEE-ecCHHHHHHhcCEE-EEEECCeEEEecC
Confidence 999999999876666654433211 11122122 49999999999999 8889998876543
No 45
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.65 E-value=6.1e-17 Score=157.84 Aligned_cols=174 Identities=16% Similarity=0.245 Sum_probs=115.5
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCC-
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKS- 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~- 84 (350)
.-+.++..+++|++++|+||||||||||+++|+|. .+|.+|.|.++|+.+..+ .. .+.++.
T Consensus 18 vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl-----------l~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~ 86 (402)
T PRK09536 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT-----------LTPTAGTVLVAGDDVEALSARAASRRVASVPQDT 86 (402)
T ss_pred EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCCcEEEECCEEcCcCCHHHHhcceEEEccCC
Confidence 34678899999999999999999999999999999 689999999999765321 11 122332
Q ss_pred CCCcceeeeeecccccccccC--cccc----chHHHHHHHHHH-----------------HHHHHhhc-CCCceeeecCC
Q 018809 85 AVPAFLEIHDIAGLVRGAHEG--QGLG----NSFLSHIRAVDG-----------------IFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~--~~~~----~~~l~~l~~~d~-----------------~l~vv~a~-~~~~vl~ld~~ 140 (350)
..+..+++.|+..+....+.+ ..+. ....+.++..++ -+.+++++ ++|++++||
T Consensus 87 ~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLD-- 164 (402)
T PRK09536 87 SLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLD-- 164 (402)
T ss_pred CCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE--
Confidence 333456666665543321110 0000 011111111111 15677888 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
||++.+|+..+..++..+..+.+ ....+... +|++..+..+|+++ .+|.+|+++..++.
T Consensus 165 -EPtsgLD~~~~~~l~~lL~~l~~----~g~TIIiv-sHdl~~~~~~adri-i~l~~G~iv~~G~~ 223 (402)
T PRK09536 165 -EPTASLDINHQVRTLELVRRLVD----DGKTAVAA-IHDLDLAARYCDEL-VLLADGRVRAAGPP 223 (402)
T ss_pred -CCcccCCHHHHHHHHHHHHHHHh----cCCEEEEE-ECCHHHHHHhCCEE-EEEECCEEEEecCH
Confidence 99999999987666555443321 11122222 49999999999999 89999998876653
No 46
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.65 E-value=4.3e-16 Score=135.88 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=120.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----------HHhhcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----------LCQLFK 81 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----------l~~~~~ 81 (350)
+-..++..|+.+.+.+||||+|||||||++++......+. . -...|.|.+.|+++.. ...+|+
T Consensus 22 aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~---~---~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQ 95 (253)
T COG1117 22 ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIP---G---ARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQ 95 (253)
T ss_pred hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCc---C---ceEEEEEEECCeeccCCCCCHHHHHHHheeecc
Confidence 4467888999999999999999999999999998853221 1 1246999999876422 222344
Q ss_pred CCCCCCcceeeeeecccccccccCc--cccchHHHHHHHHHHH---------------------HHHHhhc-CCCceeee
Q 018809 82 PKSAVPAFLEIHDIAGLVRGAHEGQ--GLGNSFLSHIRAVDGI---------------------FHVLRAF-EDPDIIHV 137 (350)
Q Consensus 82 ~~~~~~~~l~~~D~~g~~~~~~~~~--~~~~~~l~~l~~~d~~---------------------l~vv~a~-~~~~vl~l 137 (350)
... |+.++++|+..++...+... .+...+...++.|.++ +-++|++ -+|+|+.+
T Consensus 96 kPn--PFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLm 173 (253)
T COG1117 96 KPN--PFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLM 173 (253)
T ss_pred CCC--CCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEe
Confidence 444 44489999998875544321 2222233444444333 6688988 79999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++.+|++....+...+..+++.+ ++ .-.+|+++....+.|+. +++..|+++..++
T Consensus 174 D---EPtSALDPIsT~kIEeLi~eLk~~y-----TI-viVTHnmqQAaRvSD~t-aFf~~G~LvE~g~ 231 (253)
T COG1117 174 D---EPTSALDPISTLKIEELITELKKKY-----TI-VIVTHNMQQAARVSDYT-AFFYLGELVEFGP 231 (253)
T ss_pred c---CcccccCchhHHHHHHHHHHHHhcc-----EE-EEEeCCHHHHHHHhHhh-hhhcccEEEEEcC
Confidence 9 9999999998654444443333211 11 11259999999999999 8888898875543
No 47
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.65 E-value=2.2e-16 Score=140.45 Aligned_cols=169 Identities=21% Similarity=0.281 Sum_probs=107.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH---------h-hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---------Q-LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~---------~-~~~~ 82 (350)
.-+.++.++.+|+.+||+|++|||||||.++|+|+ .+|.+|.|.++|..+.... + +|+.
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl-----------~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQD 90 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGL-----------EKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQD 90 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcc-----------cCCCCceEEECCcccCccccchhhccceeEEecC
Confidence 55789999999999999999999999999999999 5899999999996443211 1 1111
Q ss_pred -CCCCCcceeeeeecccccccccCccccch---HHHHHHHHHH------------------HHHHHhhc-CCCceeeecC
Q 018809 83 -KSAVPAFLEIHDIAGLVRGAHEGQGLGNS---FLSHIRAVDG------------------IFHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 83 -~~~~~~~l~~~D~~g~~~~~~~~~~~~~~---~l~~l~~~d~------------------~l~vv~a~-~~~~vl~ld~ 139 (350)
...+....++-+...- +....++.+. ..+.+..+.+ =+.++||+ -+|+++++|
T Consensus 91 p~~SLnP~~tv~~~l~E---pl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlD- 166 (252)
T COG1124 91 PYSSLNPRRTVGRILSE---PLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILD- 166 (252)
T ss_pred CccccCcchhHHHHHhh---hhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEec-
Confidence 1111111111111000 0000000000 0000000000 04577887 799999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcccc
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~ 203 (350)
||++.+|...+..++..+..+.+..+- ..+ . -+|++..+..+|||| .+|++|.++..
T Consensus 167 --EptSaLD~siQa~IlnlL~~l~~~~~l--t~l-~-IsHdl~~v~~~cdRi-~Vm~~G~ivE~ 223 (252)
T COG1124 167 --EPTSALDVSVQAQILNLLLELKKERGL--TYL-F-ISHDLALVEHMCDRI-AVMDNGQIVEI 223 (252)
T ss_pred --CchhhhcHHHHHHHHHHHHHHHHhcCc--eEE-E-EeCcHHHHHHHhhhe-eeeeCCeEEEe
Confidence 999999999988887776665553321 011 1 149999999999999 99999987754
No 48
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=9.1e-17 Score=147.33 Aligned_cols=172 Identities=19% Similarity=0.266 Sum_probs=119.2
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------------HHhhcc
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------------LCQLFK 81 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------------l~~~~~ 81 (350)
+.++..++.|+++.|.|.+|||||||++++.++ ++|++|.|.++|.++.. ++..|+
T Consensus 45 ~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrL-----------iept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ 113 (386)
T COG4175 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL-----------IEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQ 113 (386)
T ss_pred ccceeeecCCeEEEEEecCCCCHHHHHHHHhcc-----------CCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhh
Confidence 678889999999999999999999999999999 79999999999976432 233455
Q ss_pred CCCCCCcceeeeeecccccccccC--ccccchHHHHHHHHHHH-----------------HHHHhhc-CCCceeeecCCC
Q 018809 82 PKSAVPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVDGI-----------------FHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 82 ~~~~~~~~l~~~D~~g~~~~~~~~--~~~~~~~l~~l~~~d~~-----------------l~vv~a~-~~~~vl~ld~~~ 141 (350)
.-..+| +.++.|+.+++.....- .....+....++.+.+- +-++||+ .+|+++++|
T Consensus 114 ~FaLlP-hrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMD--- 189 (386)
T COG4175 114 SFALLP-HRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMD--- 189 (386)
T ss_pred hhcccc-chhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEec---
Confidence 544555 56788887775322110 00111111122221111 4577888 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
||++.+|++-.......+-.+++.+ .+++.+- +|++++...+-+|| .+|++|+++..|+.
T Consensus 190 EaFSALDPLIR~~mQdeLl~Lq~~l---~KTIvFi-tHDLdEAlriG~rI-aimkdG~ivQ~Gtp 249 (386)
T COG4175 190 EAFSALDPLIRTEMQDELLELQAKL---KKTIVFI-THDLDEALRIGDRI-AIMKDGEIVQVGTP 249 (386)
T ss_pred CchhhcChHHHHHHHHHHHHHHHHh---CCeEEEE-ecCHHHHHhccceE-EEecCCeEEEeCCH
Confidence 9999999876544444443344433 2333222 49999999999999 99999999887754
No 49
>PRK15494 era GTPase Era; Provisional
Probab=99.65 E-value=1e-16 Score=153.51 Aligned_cols=201 Identities=14% Similarity=0.119 Sum_probs=133.9
Q ss_pred ccccccccCCc-------EEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCC
Q 018809 15 RPILGRFSSHL-------KIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86 (350)
Q Consensus 15 ~~~~~~i~~g~-------~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~ 86 (350)
..+...++.|+ .++|+|.||+|||||+|.|+|...++ ++.|+||+....|.+..++
T Consensus 36 ~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~---------------- 99 (339)
T PRK15494 36 SKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD---------------- 99 (339)
T ss_pred cCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC----------------
Confidence 33445567787 99999999999999999999988765 7899999998888888765
Q ss_pred Ccceeeeeeccccccccc-CccccchHHHHHHHHHHHHHHHhhcCCCc-----ee-eecCCCCCC----chhHHHHHHHH
Q 018809 87 PAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAVDGIFHVLRAFEDPD-----II-HVDDSVDPV----RDLEVISAELR 155 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~-~~~~~~~~l~~l~~~d~~l~vv~a~~~~~-----vl-~ld~~~eP~----~~ld~~~~el~ 155 (350)
.++.++||||....... ...+.+.....++.+|++++|+|+....+ ++ .+.....|. +.+|..+..
T Consensus 100 -~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~-- 176 (339)
T PRK15494 100 -TQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKY-- 176 (339)
T ss_pred -eEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcccc--
Confidence 35889999998654322 22233334455778888888877642211 00 011111121 233322210
Q ss_pred HHHHHHHHHHHHHHH---HHHhhcccccHHHHHHHHHHHHHHhhcCCcccc-CCCChhHH-----HHHHHh-hhhhcCCc
Q 018809 156 LKDIEFMERRIEDVE---KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAADI-----EILNTF-QLLTAKPV 225 (350)
Q Consensus 156 ~~~l~~l~~~~~~~~---~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~-~~~t~~~~-----e~i~~~-~~~~~kp~ 225 (350)
+..+.+.+.... ..+..| +....+++++.+.+...++.|+++|+ +.+||.+. |++|+. +..+++++
T Consensus 177 ---~~~~~~~l~~~~~~~~i~~iS-Aktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~Ei 252 (339)
T PRK15494 177 ---LNDIKAFLTENHPDSLLFPIS-ALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKEL 252 (339)
T ss_pred ---HHHHHHHHHhcCCCcEEEEEe-ccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccc
Confidence 111222221111 112223 36778899999999999999999988 67787653 889999 88899999
Q ss_pred chhcccchhhhhh
Q 018809 226 VYLVNMNEKDYQR 238 (350)
Q Consensus 226 ~~~~n~~~~~~~~ 238 (350)
||.+.+..+.+.+
T Consensus 253 P~~~~v~i~~~~~ 265 (339)
T PRK15494 253 PYKLTVQTEKWED 265 (339)
T ss_pred CceEEEEEEEEEE
Confidence 9999998877753
No 50
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1.6e-17 Score=159.93 Aligned_cols=173 Identities=16% Similarity=0.149 Sum_probs=115.7
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-------hhccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-------~~~~~~~~ 85 (350)
.-.+++.++.+|++++|+||||||||||+++|+|+ .+|++|.|.++|+.+..+. .+++.. .
T Consensus 19 ~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~-~ 86 (356)
T PRK11650 19 VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL-----------ERITSGEIWIGGRVVNELEPADRDIAMVFQNY-A 86 (356)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCCc-c
Confidence 34578899999999999999999999999999999 5899999999997653221 122222 2
Q ss_pred CCcceeeeeeccccccccc-C-cc---ccchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecCCCCCCc
Q 018809 86 VPAFLEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVDPVR 145 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~-~-~~---~~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~~~eP~~ 145 (350)
.+..+++.|+..+...... . .. .....++.++..+.. +.++||+ .+|+++++| ||++
T Consensus 87 lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD---EP~s 163 (356)
T PRK11650 87 LYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD---EPLS 163 (356)
T ss_pred ccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcc
Confidence 3335677776654322110 0 00 011111211111111 6688888 899999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 146 ~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
.+|....+.+...+..+.+. ....+.. .+|+..++..++|++ .+|++|+++..++
T Consensus 164 ~LD~~~r~~l~~~l~~l~~~---~g~tii~-vTHd~~ea~~l~D~i-~vl~~G~i~~~g~ 218 (356)
T PRK11650 164 NLDAKLRVQMRLEIQRLHRR---LKTTSLY-VTHDQVEAMTLADRV-VVMNGGVAEQIGT 218 (356)
T ss_pred cCCHHHHHHHHHHHHHHHHh---cCCEEEE-EeCCHHHHHHhCCEE-EEEeCCEEEEECC
Confidence 99999887666655433221 1112212 249999999999999 8999999876654
No 51
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=2.8e-17 Score=147.33 Aligned_cols=171 Identities=15% Similarity=0.194 Sum_probs=106.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH----h-hccCCC-CC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----Q-LFKPKS-AV 86 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~----~-~~~~~~-~~ 86 (350)
.-.++++++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++.... . .|.++. ..
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~ 83 (213)
T cd03259 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL-----------ERPDSGEILIDGRDVTGVPPERRNIGMVFQDYAL 83 (213)
T ss_pred eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEcCcCchhhccEEEEcCchhh
Confidence 34678899999999999999999999999999999 6899999999987653211 0 122222 12
Q ss_pred Ccceeeeeeccccccccc-C-c---cccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCch
Q 018809 87 PAFLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~-~-~---~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ 146 (350)
...+++.|+..+...... . . .....+++.+...+ .-+.+++++ .+|+++++| ||+++
T Consensus 84 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllD---EPt~~ 160 (213)
T cd03259 84 FPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLD---EPLSA 160 (213)
T ss_pred ccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCccc
Confidence 223444444432211000 0 0 00011111111100 015677877 899999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccc
Q 018809 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (350)
Q Consensus 147 ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~ 202 (350)
+|......+...+..+.+ +....+... +|+...+..+|+++ ..|.+|+++.
T Consensus 161 LD~~~~~~l~~~l~~~~~---~~~~tii~~-sH~~~~~~~~~d~v-~~l~~G~i~~ 211 (213)
T cd03259 161 LDAKLREELREELKELQR---ELGITTIYV-THDQEEALALADRI-AVMNEGRIVQ 211 (213)
T ss_pred CCHHHHHHHHHHHHHHHH---HcCCEEEEE-ecCHHHHHHhcCEE-EEEECCEEEe
Confidence 999887655555433221 111122122 49999999999999 7888887643
No 52
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.64 E-value=4.4e-17 Score=146.37 Aligned_cols=167 Identities=13% Similarity=0.155 Sum_probs=104.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--------Hh--hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQ--LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------~~--~~~~ 82 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++... .. .|.+
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~ 86 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI-----------EKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVF 86 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEehhhcChhHHHHHHHhceEEe
Confidence 34678899999999999999999999999999999 589999999998765321 11 1222
Q ss_pred CC-CCCcceeeeeeccccccccc-----CccccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCC
Q 018809 83 KS-AVPAFLEIHDIAGLVRGAHE-----GQGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 83 ~~-~~~~~l~~~D~~g~~~~~~~-----~~~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~ 141 (350)
+. .....+++.|+..+...... .......+++.+...+. -+.+++++ .+|+++++|
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD--- 163 (216)
T TIGR00960 87 QDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLAD--- 163 (216)
T ss_pred cCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence 22 22223445554433210000 00000111111111111 15677887 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~ 199 (350)
||++++|....+.+...+..+.+ ....+... +|+...+..+||++ .+|.+|+
T Consensus 164 EPt~~LD~~~~~~l~~~l~~~~~----~~~tii~v-sH~~~~~~~~~d~i-~~l~~G~ 215 (216)
T TIGR00960 164 EPTGNLDPELSRDIMRLFEEFNR----RGTTVLVA-THDINLVETYRHRT-LTLSRGR 215 (216)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHH----CCCEEEEE-eCCHHHHHHhCCEE-EEEeCCc
Confidence 99999999987665554433211 11112122 49999999999988 7777775
No 53
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.64 E-value=4.9e-17 Score=144.99 Aligned_cols=168 Identities=14% Similarity=0.135 Sum_probs=103.9
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH--HHh--hccCCCC--C
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LCQ--LFKPKSA--V 86 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~--l~~--~~~~~~~--~ 86 (350)
.-.+++.++.+|++++|+||||||||||+++|+|. .+|++|.|.++|..+.. ... .|.++.. .
T Consensus 15 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~ 83 (205)
T cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL-----------IKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQ 83 (205)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEhhhHHhhcceEEEecChhhh
Confidence 34678889999999999999999999999999999 58999999999876532 111 1222221 1
Q ss_pred CcceeeeeecccccccccC-ccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCchhHHH
Q 018809 87 PAFLEIHDIAGLVRGAHEG-QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~~-~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~ 150 (350)
....++.|+..+....... ......+++.+...+ .-+.+++++ .+|+++++| ||++++|..
T Consensus 84 ~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~ 160 (205)
T cd03226 84 LFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFD---EPTSGLDYK 160 (205)
T ss_pred hhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEe---CCCccCCHH
Confidence 1123444444322110000 000011111111111 115577777 799999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCc
Q 018809 151 SAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200 (350)
Q Consensus 151 ~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~ 200 (350)
..+.+...+..+.+ -...+... +|+...+..+||++ ..|.+|++
T Consensus 161 ~~~~l~~~l~~~~~----~~~tii~~-sH~~~~~~~~~d~i-~~l~~G~i 204 (205)
T cd03226 161 NMERVGELIRELAA----QGKAVIVI-THDYEFLAKVCDRV-LLLANGAI 204 (205)
T ss_pred HHHHHHHHHHHHHH----CCCEEEEE-eCCHHHHHHhCCEE-EEEECCEE
Confidence 87666555433211 11112122 49999999999998 77777764
No 54
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=4.3e-17 Score=146.90 Aligned_cols=174 Identities=17% Similarity=0.260 Sum_probs=108.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH----HHh--hccCCC-C
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LCQ--LFKPKS-A 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~----l~~--~~~~~~-~ 85 (350)
.-.++++++.+|++++|+|+||||||||+++|+|. .+|++|.|.++|..+.. ... .|.++. .
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~ 83 (220)
T cd03265 15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL-----------LKPTSGRATVAGHDVVREPREVRRRIGIVFQDLS 83 (220)
T ss_pred eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEecCcChHHHhhcEEEecCCcc
Confidence 34678899999999999999999999999999999 68999999998865421 111 122222 1
Q ss_pred CCcceeeeeeccccccccc-C----ccccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCc
Q 018809 86 VPAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVR 145 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~-~----~~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~ 145 (350)
....+++.|...+...... . ......+++.+...+. -+.+++++ .+|+++++| ||++
T Consensus 84 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllD---EPt~ 160 (220)
T cd03265 84 VDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLD---EPTI 160 (220)
T ss_pred ccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcc
Confidence 2223344444332110000 0 0000111111111111 15577777 899999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 146 ~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++|....+.+...+..+.+. ....+... +|+...+..+|+++ .+|++|+++..++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~---~~~tvi~~-tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 215 (220)
T cd03265 161 GLDPQTRAHVWEYIEKLKEE---FGMTILLT-THYMEEAEQLCDRV-AIIDHGRIIAEGT 215 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHh---cCCEEEEE-eCCHHHHHHhCCEE-EEEeCCEEEEeCC
Confidence 99999876666554433211 11112122 49999999999999 8889998875543
No 55
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.63 E-value=6.4e-17 Score=152.84 Aligned_cols=173 Identities=17% Similarity=0.258 Sum_probs=110.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH----Hh--hccCCC-C
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQ--LFKPKS-A 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l----~~--~~~~~~-~ 85 (350)
.-.+++.++++|+++||+||||||||||+++|+|. .+|++|.|.++|.++... .. .|.++. .
T Consensus 19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~ 87 (303)
T TIGR01288 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM-----------ISPDRGKITVLGEPVPSRARLARVAIGVVPQFDN 87 (303)
T ss_pred EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECcccHHHHhhcEEEEecccc
Confidence 34788899999999999999999999999999999 589999999998654211 11 122222 2
Q ss_pred CCcceeeeeeccccccccc-C-c---cccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCc
Q 018809 86 VPAFLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~-~-~---~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~ 145 (350)
.+..+++.|+..+...... . . .....+++.+...+ .-+.+++++ .+|+++++| ||++
T Consensus 88 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~ 164 (303)
T TIGR01288 88 LDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILD---EPTT 164 (303)
T ss_pred CCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCc
Confidence 2223455554432111000 0 0 00001111111111 115577777 899999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 146 ~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++|......+...+..+.+ -...+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 165 gLD~~~~~~l~~~l~~~~~----~g~til~~-sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 218 (303)
T TIGR01288 165 GLDPHARHLIWERLRSLLA----RGKTILLT-THFMEEAERLCDRL-CVLESGRKIAEGR 218 (303)
T ss_pred CCCHHHHHHHHHHHHHHHh----CCCEEEEE-CCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 9999987665555433211 11122122 49999999999999 8899999876654
No 56
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=2.5e-17 Score=158.34 Aligned_cols=172 Identities=14% Similarity=0.192 Sum_probs=114.0
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-------hhccCCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-------~~~~~~~~~ 86 (350)
-..++..+.+|++++|+||||||||||+++|+|+ .+|++|.|.++|..+.... .+++. ...
T Consensus 22 l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~-~~l 89 (351)
T PRK11432 22 IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL-----------EKPTEGQIFIDGEDVTHRSIQQRDICMVFQS-YAL 89 (351)
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCC-ccc
Confidence 4678899999999999999999999999999999 6899999999997653211 12222 223
Q ss_pred Ccceeeeeeccccccccc-C-ccccch---HHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCch
Q 018809 87 PAFLEIHDIAGLVRGAHE-G-QGLGNS---FLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRD 146 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~-~-~~~~~~---~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~~ 146 (350)
+.++++.|+..+...... . .....+ .++.++..+. -+.++|++ .+|+++++| ||++.
T Consensus 90 fp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLD---EP~s~ 166 (351)
T PRK11432 90 FPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFD---EPLSN 166 (351)
T ss_pred CCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCccc
Confidence 335667776655321110 0 000001 1111111111 15678888 899999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 147 ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+|....+.+...+..+.+. ....+... +|+..++..++|++ .+|++|++...++
T Consensus 167 LD~~~r~~l~~~l~~l~~~---~g~tii~v-THd~~e~~~laD~i-~vm~~G~i~~~g~ 220 (351)
T PRK11432 167 LDANLRRSMREKIRELQQQ---FNITSLYV-THDQSEAFAVSDTV-IVMNKGKIMQIGS 220 (351)
T ss_pred CCHHHHHHHHHHHHHHHHh---cCCEEEEE-cCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 9999876666654433221 11112122 49999999999999 9999999876654
No 57
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.63 E-value=2.7e-16 Score=140.13 Aligned_cols=163 Identities=22% Similarity=0.355 Sum_probs=98.9
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH--HHhhccCCCCCCcc
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LCQLFKPKSAVPAF 89 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~--l~~~~~~~~~~~~~ 89 (350)
.+-+++++.+..|+.+||||+||||||||+++|+|. ++|++|.|.+.|+-..- +...|+|+-.-..+
T Consensus 41 ~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi-----------~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreN 109 (249)
T COG1134 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI-----------YKPTSGKVKVTGKVAPLIELGAGFDPELTGREN 109 (249)
T ss_pred EEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCc-----------cCCCCceEEEcceEehhhhcccCCCcccchHHH
Confidence 344889999999999999999999999999999999 79999999999853211 12223332110000
Q ss_pred e-------------------eeeeeccccc---ccccCccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchh
Q 018809 90 L-------------------EIHDIAGLVR---GAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDL 147 (350)
Q Consensus 90 l-------------------~~~D~~g~~~---~~~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~l 147 (350)
+ +++|.+.++. .+-+..+-|+. .+|. +-+-...+||++++| |-
T Consensus 110 i~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~--aRLa------Fsia~~~~pdILllD---Ev---- 174 (249)
T COG1134 110 IYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMY--ARLA------FSVATHVEPDILLLD---EV---- 174 (249)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHH--HHHH------HhhhhhcCCCEEEEe---hh----
Confidence 0 1112222211 11111111111 1111 112223589999998 32
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 148 EVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 148 d~~~~el~~~~l~~l~~~~~~~~~~~~~~~-----~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
+...|..+.+|..+++...+..+. +|+...+..+|+++ .+|+.|++...|+..
T Consensus 175 ------lavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~-i~l~~G~i~~~G~~~ 232 (249)
T COG1134 175 ------LAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRA-IWLEHGQIRMEGSPE 232 (249)
T ss_pred ------hhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCee-EEEeCCEEEEcCCHH
Confidence 222333344555555555433332 49999999999999 999999988777654
No 58
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=5.5e-17 Score=146.24 Aligned_cols=173 Identities=20% Similarity=0.223 Sum_probs=106.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh--hccCCC-CCCcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--LFKPKS-AVPAF 89 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~--~~~~~~-~~~~~ 89 (350)
.-.+++.++++|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++..... .|.++. .....
T Consensus 19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~ 87 (220)
T cd03293 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL-----------ERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPW 87 (220)
T ss_pred EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECccccCcEEEEecccccccC
Confidence 34678899999999999999999999999999999 57899999999876532111 122221 11222
Q ss_pred eeeeeeccccccccc-----CccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCchhHH
Q 018809 90 LEIHDIAGLVRGAHE-----GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (350)
Q Consensus 90 l~~~D~~g~~~~~~~-----~~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (350)
+++.|+..+...... .......+++.+...+ .-+.+++++ .+|+++++| ||++++|.
T Consensus 88 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD---EPt~~LD~ 164 (220)
T cd03293 88 LTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLD---EPFSALDA 164 (220)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEC---CCCCCCCH
Confidence 344443322111000 0000011111111111 115577777 799999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhh--cCCccccC
Q 018809 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ--DGKDVRLG 204 (350)
Q Consensus 150 ~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~--~g~~~~~~ 204 (350)
.....+...+..+.+ +....+... +|+...+..+|+++ ..|. +|+++...
T Consensus 165 ~~~~~~~~~l~~~~~---~~~~tiii~-sH~~~~~~~~~d~i-~~l~~~~G~i~~~~ 216 (220)
T cd03293 165 LTREQLQEELLDIWR---ETGKTVLLV-THDIDEAVFLADRV-VVLSARPGRIVAEV 216 (220)
T ss_pred HHHHHHHHHHHHHHH---HcCCEEEEE-ecCHHHHHHhCCEE-EEEECCCCEEEEEE
Confidence 997666665443211 111122122 49999999999999 7787 68876543
No 59
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.63 E-value=3.8e-17 Score=157.19 Aligned_cols=171 Identities=15% Similarity=0.191 Sum_probs=114.1
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-------hhccCCCCCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-------~~~~~~~~~~ 87 (350)
.+++..+.+|++++|+||||||||||+++|+|+ .+|++|.|.++|+.+.... .+++. ...+
T Consensus 21 ~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~-~~lf 88 (353)
T TIGR03265 21 KDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL-----------ERQTAGTIYQGGRDITRLPPQKRDYGIVFQS-YALF 88 (353)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCC-cccC
Confidence 578899999999999999999999999999999 5899999999997653211 12222 2233
Q ss_pred cceeeeeeccccccccc--C---ccccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCchh
Q 018809 88 AFLEIHDIAGLVRGAHE--G---QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~~--~---~~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~~l 147 (350)
.++++.++..+...... . ......+++.++..+. -+.++|++ .+|+++++| ||++.+
T Consensus 89 p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLD---EP~s~L 165 (353)
T TIGR03265 89 PNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLD---EPLSAL 165 (353)
T ss_pred CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccC
Confidence 35677777655422110 0 0001111111111111 15677888 899999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 148 d~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|....+.+...+..+.+. ....+... +|+..++..++|++ .+|++|+++..++
T Consensus 166 D~~~r~~l~~~L~~l~~~---~~~tvi~v-THd~~ea~~l~d~i-~vl~~G~i~~~g~ 218 (353)
T TIGR03265 166 DARVREHLRTEIRQLQRR---LGVTTIMV-THDQEEALSMADRI-VVMNHGVIEQVGT 218 (353)
T ss_pred CHHHHHHHHHHHHHHHHh---cCCEEEEE-cCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 999876666554433221 11112122 49999999999999 9999999876654
No 60
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.63 E-value=7.9e-17 Score=143.91 Aligned_cols=171 Identities=14% Similarity=0.151 Sum_probs=108.1
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH---Hh--hccCCC-C
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---CQ--LFKPKS-A 85 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l---~~--~~~~~~-~ 85 (350)
+.-.++++.+.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++... .. .|.++. .
T Consensus 14 ~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~ 82 (208)
T cd03268 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL-----------IKPDSGEITFDGKSYQKNIEALRRIGALIEAPG 82 (208)
T ss_pred EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCCcccchHHHHhhEEEecCCCc
Confidence 344678899999999999999999999999999999 589999999998765321 11 122322 2
Q ss_pred CCcceeeeeeccccccccc-CccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCchhHH
Q 018809 86 VPAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~-~~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (350)
.+..+++.|+..+...... ........++.++..+ .-+.+++++ .+|+++++| ||++++|.
T Consensus 83 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~LD~ 159 (208)
T cd03268 83 FYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILD---EPTNGLDP 159 (208)
T ss_pred cCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCcccCCH
Confidence 3334555555433211110 0000111111111111 115677887 899999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccc
Q 018809 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (350)
Q Consensus 150 ~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~ 202 (350)
...+.+...+..+.+ ....+.. .+|+...+..+|+++ ..|++|+++.
T Consensus 160 ~~~~~l~~~l~~~~~----~~~tii~-~tH~~~~~~~~~d~v-~~l~~g~i~~ 206 (208)
T cd03268 160 DGIKELRELILSLRD----QGITVLI-SSHLLSEIQKVADRI-GIINKGKLIE 206 (208)
T ss_pred HHHHHHHHHHHHHHH----CCCEEEE-EcCCHHHHHHhcCEE-EEEECCEEEe
Confidence 987655554432211 1111112 249999999999999 8888887653
No 61
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.63 E-value=1.3e-16 Score=145.83 Aligned_cols=174 Identities=18% Similarity=0.234 Sum_probs=110.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--------Hh--hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQ--LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------~~--~~~~ 82 (350)
.-.++++++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++... .. .|.+
T Consensus 17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~ 85 (243)
T TIGR02315 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL-----------VEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIF 85 (243)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCccEEEECCEEhhhCCHHHHHHHHhheEEEc
Confidence 44678899999999999999999999999999999 589999999998765321 11 2223
Q ss_pred CC-CCCcceeeeeecccccccc--------c--Ccc---ccchHHHHHHHHHH--------------HHHHHhhc-CCCc
Q 018809 83 KS-AVPAFLEIHDIAGLVRGAH--------E--GQG---LGNSFLSHIRAVDG--------------IFHVLRAF-EDPD 133 (350)
Q Consensus 83 ~~-~~~~~l~~~D~~g~~~~~~--------~--~~~---~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~ 133 (350)
+. .....+++.|+..+..... . ... ....+++.+..... -+.+++++ .+|+
T Consensus 86 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 165 (243)
T TIGR02315 86 QHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPD 165 (243)
T ss_pred CCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 22 2222345555443221100 0 000 00111111111110 15677887 8999
Q ss_pred eeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 134 vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++++| ||++++|....+.+...+..+.+ +....+... +|+...+..+||++ ..|.+|+++..++
T Consensus 166 llllD---EPt~~LD~~~~~~l~~~l~~~~~---~~~~tiii~-tH~~~~~~~~~d~v-~~l~~G~i~~~~~ 229 (243)
T TIGR02315 166 LILAD---EPIASLDPKTSKQVMDYLKRINK---EDGITVIIN-LHQVDLAKKYADRI-VGLKAGEIVFDGA 229 (243)
T ss_pred EEEEe---CCcccCCHHHHHHHHHHHHHHHH---HcCCEEEEE-eCCHHHHHHhcCeE-EEEECCEEEecCC
Confidence 99999 99999999887666555433221 111122122 49999999999999 8889998876554
No 62
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.63 E-value=5e-17 Score=156.54 Aligned_cols=174 Identities=19% Similarity=0.217 Sum_probs=114.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH---------Hh--hcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------CQ--LFK 81 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l---------~~--~~~ 81 (350)
.-++++.++.+|++++|+|+||||||||+++|+|+ .+|++|.|.++|+++..+ .. .|.
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl-----------~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v 76 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRL-----------IEPTAGQIFIDGENIMKQSPVELREVRRKKIGMV 76 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCHHHHHHHHhCcEEEE
Confidence 44788999999999999999999999999999999 689999999999765321 10 121
Q ss_pred C-CCCCCcceeeeeeccccccccc--CccccchHHHHHHHHHH-----------------HHHHHhhc-CCCceeeecCC
Q 018809 82 P-KSAVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDG-----------------IFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 82 ~-~~~~~~~l~~~D~~g~~~~~~~--~~~~~~~~l~~l~~~d~-----------------~l~vv~a~-~~~~vl~ld~~ 140 (350)
+ +......+++.++..+...... ......+..+.+..+++ -+.+++++ .+|+++++|
T Consensus 77 ~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD-- 154 (363)
T TIGR01186 77 FQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMD-- 154 (363)
T ss_pred ECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 2 2223334566666544321110 00000111111111111 15678888 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|....+.+...+..+.+. ..+++... +|+..++..+||+| .+|.+|+++..++
T Consensus 155 -EP~saLD~~~r~~l~~~l~~l~~~---~~~Tii~v-THd~~ea~~~~drI-~vl~~G~iv~~g~ 213 (363)
T TIGR01186 155 -EAFSALDPLIRDSMQDELKKLQAT---LQKTIVFI-THDLDEAIRIGDRI-VIMKAGEIVQVGT 213 (363)
T ss_pred -CCcccCCHHHHHHHHHHHHHHHHh---cCCEEEEE-eCCHHHHHHhCCEE-EEEeCCEEEeeCC
Confidence 999999999876665554433221 11222122 49999999999999 8999999876654
No 63
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.63 E-value=4.2e-16 Score=132.72 Aligned_cols=171 Identities=16% Similarity=0.187 Sum_probs=116.2
Q ss_pred ccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHhhccCCCCCCcc
Q 018809 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQLFKPKSAVPAF 89 (350)
Q Consensus 17 ~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~~~~~~~~~~~~ 89 (350)
..-.|..|++++|+||+|||||||+|.++|. ..|.+|.|.++|++... .+.+|+.. ....+
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF-----------~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEn-NLFaH 85 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGF-----------ETPASGEILINGVDHTASPPAERPVSMLFQEN-NLFAH 85 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhc-----------cCCCCceEEEcCeecCcCCcccCChhhhhhcc-ccchh
Confidence 4456899999999999999999999999999 58999999999986533 23344443 44567
Q ss_pred eeeeeecccccccccCcc-----ccchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecCCCCCCchhHH
Q 018809 90 LEIHDIAGLVRGAHEGQG-----LGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (350)
Q Consensus 90 l~~~D~~g~~~~~~~~~~-----~~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (350)
+++..+.|++..+..... ........+...+.. +.++||+ .+-.|+.|| ||++.+|+
T Consensus 86 LtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLD---EPFsALdP 162 (231)
T COG3840 86 LTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLD---EPFSALDP 162 (231)
T ss_pred hhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEec---CchhhcCH
Confidence 889999888754432110 011112222222221 5678888 667789999 99999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 150 ~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
.-....+..+..+-... ..++ .-.+|..++...+.+++ .++.+|++.+.+..+
T Consensus 163 ~LR~eMl~Lv~~l~~E~---~~Tl-lmVTH~~~Da~~ia~~~-~fl~~Gri~~~g~~~ 215 (231)
T COG3840 163 ALRAEMLALVSQLCDER---KMTL-LMVTHHPEDAARIADRV-VFLDNGRIAAQGSTQ 215 (231)
T ss_pred HHHHHHHHHHHHHHHhh---CCEE-EEEeCCHHHHHHhhhce-EEEeCCEEEeeccHH
Confidence 76655555443332211 1111 11259999999999999 999999998776543
No 64
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.63 E-value=2e-16 Score=142.57 Aligned_cols=172 Identities=16% Similarity=0.201 Sum_probs=109.3
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH------Hh--hccCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQ--LFKPKS 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l------~~--~~~~~~ 84 (350)
.-.+++.++.+|+++||+|+||||||||+++|+|. .+|++|.|.++|.++... .. .|.++.
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~ 83 (222)
T cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL-----------LPPRSGSIRFDGRDITGLPPHERARAGIGYVPEG 83 (222)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEcCCCCHHHHHhcCeEEeccc
Confidence 34678889999999999999999999999999999 589999999998654211 11 122222
Q ss_pred -CCCcceeeeeeccccccccc---CccccchHHHHHH-HHHH--------------HHHHHhhc-CCCceeeecCCCCCC
Q 018809 85 -AVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIR-AVDG--------------IFHVLRAF-EDPDIIHVDDSVDPV 144 (350)
Q Consensus 85 -~~~~~l~~~D~~g~~~~~~~---~~~~~~~~l~~l~-~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~ 144 (350)
.....+++.|...+...... .......+++.+. ..+. -+.+++++ .+|+++++| ||+
T Consensus 84 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt 160 (222)
T cd03224 84 RRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLD---EPS 160 (222)
T ss_pred cccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCc
Confidence 22223445444433211110 0000111222221 1111 15677887 899999999 999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 145 ~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
+++|....+.+...+..+.+ ....+... +|+...+..+|+++ .+|++|++...+
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~----~~~tiii~-sH~~~~~~~~~d~i-~~l~~G~i~~~~ 214 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRD----EGVTILLV-EQNARFALEIADRA-YVLERGRVVLEG 214 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHH----CCCEEEEE-eCCHHHHHHhccEE-EEeeCCeEEEeC
Confidence 99999987666555433211 11122122 49999999999999 888999876544
No 65
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.63 E-value=9.5e-17 Score=144.57 Aligned_cols=172 Identities=19% Similarity=0.216 Sum_probs=109.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH----Hh--hccCCC-C
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQ--LFKPKS-A 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l----~~--~~~~~~-~ 85 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|++|.|.++|.++... .. .|.++. .
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~ 85 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE-----------LRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDA 85 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEecccchHHHhhhEEEecCcCC
Confidence 44778999999999999999999999999999999 589999999998764321 11 122222 2
Q ss_pred CCcceeeeeeccccccccc--Cc---cccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCc
Q 018809 86 VPAFLEIHDIAGLVRGAHE--GQ---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVR 145 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~--~~---~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~ 145 (350)
.+...++.|+..+...... .. .....+++.++..+. -+.+++++ .+|+++++| ||++
T Consensus 86 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EP~~ 162 (220)
T cd03263 86 LFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLD---EPTS 162 (220)
T ss_pred ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCCC
Confidence 2223444444332211000 00 001111111111111 15577777 899999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 146 ~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++|....+.+...+..+.+ ...+... +|+...+..+|+++ .+|++|+++..++
T Consensus 163 ~LD~~~~~~l~~~l~~~~~-----~~tii~~-sH~~~~~~~~~d~i-~~l~~g~i~~~~~ 215 (220)
T cd03263 163 GLDPASRRAIWDLILEVRK-----GRSIILT-THSMDEAEALCDRI-AIMSDGKLRCIGS 215 (220)
T ss_pred CCCHHHHHHHHHHHHHHhc-----CCEEEEE-cCCHHHHHHhcCEE-EEEECCEEEecCC
Confidence 9999987666555433221 1112122 49999999999999 8889998775543
No 66
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.62 E-value=3.1e-16 Score=142.26 Aligned_cols=174 Identities=16% Similarity=0.188 Sum_probs=110.7
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH------HH--hhccCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LC--QLFKPKS 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~------l~--~~~~~~~ 84 (350)
.-.++++.+.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++.. .. -.|.++.
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~ 83 (230)
T TIGR03410 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL-----------LPVKSGSIRLDGEDITKLPPHERARAGIAYVPQG 83 (230)
T ss_pred EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEECCCCCHHHHHHhCeEEeccC
Confidence 34788999999999999999999999999999999 68999999999865421 11 1232322
Q ss_pred -CCCcceeeeeeccccccccc-C-ccccchHHHHHHH-HHH--------------HHHHHhhc-CCCceeeecCCCCCCc
Q 018809 85 -AVPAFLEIHDIAGLVRGAHE-G-QGLGNSFLSHIRA-VDG--------------IFHVLRAF-EDPDIIHVDDSVDPVR 145 (350)
Q Consensus 85 -~~~~~l~~~D~~g~~~~~~~-~-~~~~~~~l~~l~~-~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~ 145 (350)
..+..+++.|...+...... . ......+++.+.. .+. -+.+++++ .+|+++++| ||++
T Consensus 84 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlD---EPt~ 160 (230)
T TIGR03410 84 REIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLD---EPTE 160 (230)
T ss_pred CcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCcc
Confidence 22223445444432211110 0 0111122222211 111 15577777 899999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 146 ~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++|......+...+..+.+ +....+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~---~~~~tii~~-sH~~~~~~~~~d~v-~~l~~g~i~~~~~ 215 (230)
T TIGR03410 161 GIQPSIIKDIGRVIRRLRA---EGGMAILLV-EQYLDFARELADRY-YVMERGRVVASGA 215 (230)
T ss_pred cCCHHHHHHHHHHHHHHHH---cCCcEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9999987666555433211 111122122 49999999999999 8889998876554
No 67
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=8.5e-17 Score=146.85 Aligned_cols=174 Identities=21% Similarity=0.246 Sum_probs=109.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--------Hh--hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQ--LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------~~--~~~~ 82 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++... .. .|.+
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~ 84 (241)
T cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL-----------VEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIF 84 (241)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCCceEEECCEeccccCHhHHHHHHhccEEEc
Confidence 34678899999999999999999999999999999 578999999998754321 11 2333
Q ss_pred CC-CCCcceeeeeecccccccc--------c--Ccc---ccchHHHHHHHHHH--------------HHHHHhhc-CCCc
Q 018809 83 KS-AVPAFLEIHDIAGLVRGAH--------E--GQG---LGNSFLSHIRAVDG--------------IFHVLRAF-EDPD 133 (350)
Q Consensus 83 ~~-~~~~~l~~~D~~g~~~~~~--------~--~~~---~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~ 133 (350)
+. .....+++.|+..+..... . ... ....+++.+...+. -+.+++++ .+|+
T Consensus 85 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 164 (241)
T cd03256 85 QQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPK 164 (241)
T ss_pred ccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 32 2222345545443211000 0 000 00011111111110 05577777 8999
Q ss_pred eeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 134 vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++++| ||++++|....+.+...+..+.+. ....+... +|+...+..+||++ .+|.+|+++..++
T Consensus 165 llllD---EPt~~LD~~~~~~l~~~l~~~~~~---~~~tii~~-tH~~~~~~~~~d~v-~~l~~G~i~~~~~ 228 (241)
T cd03256 165 LILAD---EPVASLDPASSRQVMDLLKRINRE---EGITVIVS-LHQVDLAREYADRI-VGLKDGRIVFDGP 228 (241)
T ss_pred EEEEe---CccccCCHHHHHHHHHHHHHHHHh---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEeecC
Confidence 99999 999999999876665554432211 11122122 49999999999999 8889998876544
No 68
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=1e-16 Score=143.53 Aligned_cols=168 Identities=19% Similarity=0.174 Sum_probs=105.0
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----hhccCCC-CCCc
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPA 88 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~~~~~~~-~~~~ 88 (350)
.++++++.+|++++|+|+||||||||+++|+|. .+|++|.|.++|..+.... -.|.++. ..+.
T Consensus 15 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~ 83 (211)
T cd03298 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGF-----------ETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFA 83 (211)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEcCcCCHhHccEEEEecccccCC
Confidence 378999999999999999999999999999999 5799999999987543211 0122221 2222
Q ss_pred ceeeeeecccccccccC--ccccchHHHHHHHHH-----------------HHHHHHhhc-CCCceeeecCCCCCCchhH
Q 018809 89 FLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAVD-----------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (350)
Q Consensus 89 ~l~~~D~~g~~~~~~~~--~~~~~~~l~~l~~~d-----------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (350)
.+++.|+..+....... .....++...++..+ .-+.+++++ .+|+++++| ||++++|
T Consensus 84 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllD---EP~~~LD 160 (211)
T cd03298 84 HLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLD---EPFAALD 160 (211)
T ss_pred CCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcccCC
Confidence 33444443322110000 000001111111111 015677787 899999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc
Q 018809 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (350)
Q Consensus 149 ~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~ 201 (350)
....+.+...+..+.+ +....+... +|+...+..+||++ .+|++|+++
T Consensus 161 ~~~~~~l~~~l~~~~~---~~~~tii~~-sH~~~~~~~~~d~i-~~l~~G~i~ 208 (211)
T cd03298 161 PALRAEMLDLVLDLHA---ETKMTVLMV-THQPEDAKRLAQRV-VFLDNGRIA 208 (211)
T ss_pred HHHHHHHHHHHHHHHH---hcCCEEEEE-ecCHHHHHhhhCEE-EEEECCEEe
Confidence 9997666555433221 111112122 49999999999999 788888764
No 69
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.62 E-value=7.6e-17 Score=146.41 Aligned_cols=171 Identities=15% Similarity=0.241 Sum_probs=107.3
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH--hhccCCC-CCCccee
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKS-AVPAFLE 91 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~--~~~~~~~-~~~~~l~ 91 (350)
.+++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++.... ..|.++. .....++
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~t 70 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL-----------AQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLT 70 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCChhheEEecCcccCCCCC
Confidence 357888999999999999999999999999999 6899999999987653211 1222222 2222344
Q ss_pred eeeecccccccc-cCc------cccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCchhHH
Q 018809 92 IHDIAGLVRGAH-EGQ------GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (350)
Q Consensus 92 ~~D~~g~~~~~~-~~~------~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (350)
+.|+..+..... ... .....+++.+...+. -+.+++++ .+|+++++| ||++++|.
T Consensus 71 v~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~gLD~ 147 (230)
T TIGR01184 71 VRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLD---EPFGALDA 147 (230)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCCcCCCH
Confidence 555443321000 000 000111111111111 15577777 899999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 150 ~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
.....+...+..+.+. ....+... +|+...+..+||++ ..|.+|+++..+
T Consensus 148 ~~~~~l~~~l~~~~~~---~~~tii~~-sH~~~~~~~~~d~v-~~l~~G~i~~~~ 197 (230)
T TIGR01184 148 LTRGNLQEELMQIWEE---HRVTVLMV-THDVDEALLLSDRV-VMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHHHHh---cCCEEEEE-eCCHHHHHHhcCEE-EEEeCCcEeccc
Confidence 9876655554332211 11112122 49999999999999 888889877554
No 70
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.62 E-value=4.1e-17 Score=156.65 Aligned_cols=174 Identities=18% Similarity=0.256 Sum_probs=111.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--------Hh--hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQ--LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------~~--~~~~ 82 (350)
.-.+++.++++|+++||+|+||||||||+++|+|. .+|++|.|.++|.++..+ .. .|.+
T Consensus 20 il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~ 88 (343)
T PRK11153 20 ALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL-----------ERPTSGRVLVDGQDLTALSEKELRKARRQIGMIF 88 (343)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCHHHHHHHhcCEEEEe
Confidence 34678899999999999999999999999999999 689999999998764321 11 1222
Q ss_pred CC-CCCcceeeeeeccccccccc--Cc---cccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCC
Q 018809 83 KS-AVPAFLEIHDIAGLVRGAHE--GQ---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 83 ~~-~~~~~l~~~D~~g~~~~~~~--~~---~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
+. .....+++.|+..+...... .. .....+++.+...+ .-+.+++++ .+|+++++|
T Consensus 89 q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLD--- 165 (343)
T PRK11153 89 QHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCD--- 165 (343)
T ss_pred CCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---
Confidence 22 22233455555433211000 00 00011111111111 015677777 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+.+. ....+... +|++..+..+||++ .+|.+|+++..++
T Consensus 166 EPts~LD~~~~~~l~~~L~~l~~~---~g~tiilv-tH~~~~i~~~~d~v-~~l~~G~i~~~g~ 224 (343)
T PRK11153 166 EATSALDPATTRSILELLKDINRE---LGLTIVLI-THEMDVVKRICDRV-AVIDAGRLVEQGT 224 (343)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHh---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 999999999876666554433221 11112122 49999999999999 8899999876554
No 71
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.62 E-value=2.2e-16 Score=145.72 Aligned_cols=172 Identities=16% Similarity=0.150 Sum_probs=107.9
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh--hccCCC-CCCcce
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--LFKPKS-AVPAFL 90 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~--~~~~~~-~~~~~l 90 (350)
-.+++.++.+|++++|+|+||||||||+++|+|. .+|++|.|.++|..+..+.. .|.++. ......
T Consensus 28 l~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~ 96 (257)
T PRK11247 28 LNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL-----------ETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWK 96 (257)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEHHHhhCceEEEecCccCCCCC
Confidence 3678899999999999999999999999999999 58999999998865433221 122222 222223
Q ss_pred eeeeecccccccccCccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHH
Q 018809 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELR 155 (350)
Q Consensus 91 ~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~ 155 (350)
++.|+..+..... .......+++.+...+ .-+.+++++ .+|+++++| ||++++|......+
T Consensus 97 tv~enl~~~~~~~-~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLD---EPt~~LD~~~~~~l 172 (257)
T PRK11247 97 KVIDNVGLGLKGQ-WRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLD---EPLGALDALTRIEM 172 (257)
T ss_pred cHHHHHHhcccch-HHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHHHHHH
Confidence 4444433221000 0000011111111111 115577777 899999999 99999999987666
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 156 LKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 156 ~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
...+..+.+ +....+... +|+...+..+|+++ ..|.+|+++..++
T Consensus 173 ~~~L~~~~~---~~~~tviiv-sHd~~~~~~~~d~i-~~l~~G~i~~~~~ 217 (257)
T PRK11247 173 QDLIESLWQ---QHGFTVLLV-THDVSEAVAMADRV-LLIEEGKIGLDLT 217 (257)
T ss_pred HHHHHHHHH---HcCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEeecc
Confidence 555433211 111122122 49999999999999 8888898775543
No 72
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=8.9e-17 Score=146.72 Aligned_cols=174 Identities=14% Similarity=0.147 Sum_probs=108.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----hhccCCC-CC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AV 86 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~~~~~~~-~~ 86 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|++|.|.++|.++.... -.|.++. ..
T Consensus 17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~ 85 (239)
T cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL-----------ERPDSGTILFGGEDATDVPVQERNVGFVFQHYAL 85 (239)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCccccceEEEecCCcc
Confidence 34678899999999999999999999999999999 5789999999986543211 0122222 12
Q ss_pred Ccceeeeeeccccccccc-----C-cc---ccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCC
Q 018809 87 PAFLEIHDIAGLVRGAHE-----G-QG---LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVD 142 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~-----~-~~---~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~e 142 (350)
...+++.|+..+...... . .. .....++.+...+. -+.+++++ .+|+++++| |
T Consensus 86 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---E 162 (239)
T cd03296 86 FRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD---E 162 (239)
T ss_pred cCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc---C
Confidence 223344444332211000 0 00 00011111111000 15677887 899999999 9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 143 P~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|++++|....+.+...+..+.+. ....+... +|+...+..+|+++ ..|.+|++...++
T Consensus 163 P~~~LD~~~~~~l~~~l~~~~~~---~~~tvii~-sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 220 (239)
T cd03296 163 PFGALDAKVRKELRRWLRRLHDE---LHVTTVFV-THDQEEALEVADRV-VVMNKGRIEQVGT 220 (239)
T ss_pred CcccCCHHHHHHHHHHHHHHHHH---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCeEEEecC
Confidence 99999999876665554332211 11122122 49999999999999 8889998765543
No 73
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.62 E-value=1.6e-16 Score=152.85 Aligned_cols=174 Identities=15% Similarity=0.174 Sum_probs=113.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-----hccCCC-CC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----LFKPKS-AV 86 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-----~~~~~~-~~ 86 (350)
.-.+++..+.+|++++|+||||||||||+++|+|. .+|++|.|.++|+++..... .|.+|. ..
T Consensus 17 ~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l 85 (353)
T PRK10851 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL-----------EHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYAL 85 (353)
T ss_pred EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHCCEEEEecCccc
Confidence 34678899999999999999999999999999999 68999999999976532110 122222 22
Q ss_pred Ccceeeeeecccccccc---cC---cc---ccchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecCCCC
Q 018809 87 PAFLEIHDIAGLVRGAH---EG---QG---LGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVD 142 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~---~~---~~---~~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~~~e 142 (350)
+..+++.++..+..... .. .. .....++.++..+.. +.+++++ .+|+++++| |
T Consensus 86 ~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLD---E 162 (353)
T PRK10851 86 FRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD---E 162 (353)
T ss_pred CCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 33456666655432110 00 00 001111111111111 6678888 899999999 9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 143 P~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|++.+|....+.+...+..+.+. ....+... +|+..++..+||++ .+|.+|+++..++
T Consensus 163 P~s~LD~~~r~~l~~~L~~l~~~---~g~tii~v-THd~~ea~~~~Dri-~vl~~G~i~~~g~ 220 (353)
T PRK10851 163 PFGALDAQVRKELRRWLRQLHEE---LKFTSVFV-THDQEEAMEVADRV-VVMSQGNIEQAGT 220 (353)
T ss_pred CCccCCHHHHHHHHHHHHHHHHh---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 99999999876666554433221 11111122 49999999999999 9999999876654
No 74
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.62 E-value=7.3e-17 Score=144.62 Aligned_cols=171 Identities=14% Similarity=0.157 Sum_probs=105.3
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----hhccCCC-CC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AV 86 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~~~~~~~-~~ 86 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++.... -.|.++. ..
T Consensus 15 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~ 83 (213)
T cd03301 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL-----------EEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYAL 83 (213)
T ss_pred eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCCcccceEEEEecChhh
Confidence 34678899999999999999999999999999999 5899999999887543211 1122221 11
Q ss_pred Ccceeeeeeccccccccc-C-cc---ccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCch
Q 018809 87 PAFLEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRD 146 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~-~-~~---~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~~ 146 (350)
....++.|+..+...... . .. ....+++.+...+. -+.+++++ .+|+++++| ||+++
T Consensus 84 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD---EPt~~ 160 (213)
T cd03301 84 YPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMD---EPLSN 160 (213)
T ss_pred ccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCccc
Confidence 222344444332110000 0 00 00111111111111 15677777 899999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccc
Q 018809 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (350)
Q Consensus 147 ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~ 202 (350)
+|....+.+...+..+.+. ....+... +|+...+..+|+++ .+|.+|+++.
T Consensus 161 LD~~~~~~l~~~l~~~~~~---~~~tvi~~-sH~~~~~~~~~d~i-~~l~~g~~~~ 211 (213)
T cd03301 161 LDAKLRVQMRAELKRLQQR---LGTTTIYV-THDQVEAMTMADRI-AVMNDGQIQQ 211 (213)
T ss_pred CCHHHHHHHHHHHHHHHHH---cCCEEEEE-eCCHHHHHHhcCeE-EEEECCEEEe
Confidence 9999876655554332211 11122122 49999999999998 7788887654
No 75
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.62 E-value=2.2e-15 Score=145.71 Aligned_cols=171 Identities=18% Similarity=0.221 Sum_probs=113.6
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH------HHh---hccC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LCQ---LFKP 82 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~------l~~---~~~~ 82 (350)
-+++.++.++.+|++.+|+|.||||||||+|+|.|. ..|++|.|.++|+.+.. ... +..+
T Consensus 18 ~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~-----------~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQ 86 (501)
T COG3845 18 VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGL-----------YQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQ 86 (501)
T ss_pred EecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCc-----------ccCCcceEEECCEEeccCCHHHHHHcCCcEEee
Confidence 378999999999999999999999999999999999 69999999999986432 111 3333
Q ss_pred CCCCCcceeeeeecccccccccCccccc-hHHHHHH-HHHHH--------------------HHHHhhc-CCCceeeecC
Q 018809 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGN-SFLSHIR-AVDGI--------------------FHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 83 ~~~~~~~l~~~D~~g~~~~~~~~~~~~~-~~l~~l~-~~d~~--------------------l~vv~a~-~~~~vl~ld~ 139 (350)
+......+++.++.-++.....+..... +..+.+. .++.. +.++.++ .+++++++|
T Consensus 87 HF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILD- 165 (501)
T COG3845 87 HFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILD- 165 (501)
T ss_pred ccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEc-
Confidence 3333446788887766654322111111 1111111 11111 5577777 899999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccc
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~ 202 (350)
||++-+-+.+-+.++..+. .+.+-.+.+..- +|.+.++.++|||+ .+|..|+.+.
T Consensus 166 --EPTaVLTP~E~~~lf~~l~----~l~~~G~tIi~I-THKL~Ev~~iaDrv-TVLR~Gkvvg 220 (501)
T COG3845 166 --EPTAVLTPQEADELFEILR----RLAAEGKTIIFI-THKLKEVMAIADRV-TVLRRGKVVG 220 (501)
T ss_pred --CCcccCCHHHHHHHHHHHH----HHHHCCCEEEEE-eccHHHHHHhhCee-EEEeCCeEEe
Confidence 9998777766433333322 121111111111 49999999999999 9999998664
No 76
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.61 E-value=1.7e-16 Score=142.36 Aligned_cols=166 Identities=17% Similarity=0.197 Sum_probs=103.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH--------HHh--hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--------LCQ--LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~--------l~~--~~~~ 82 (350)
.=.+++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++.. +.. .|.+
T Consensus 17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~ 85 (214)
T TIGR02673 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA-----------LTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVF 85 (214)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEcccCCHHHHHHHHhheEEEe
Confidence 34678899999999999999999999999999999 57899999999875431 111 1222
Q ss_pred CC-CCCcceeeeeeccccccccc-C----ccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCC
Q 018809 83 KS-AVPAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 83 ~~-~~~~~l~~~D~~g~~~~~~~-~----~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
+. ......++.|+..+...... . ......+++.+...+ .-+.+++++ .+|+++++|
T Consensus 86 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLD--- 162 (214)
T TIGR02673 86 QDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLAD--- 162 (214)
T ss_pred cChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEe---
Confidence 22 22223445554433210000 0 000011111111111 115677777 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g 198 (350)
||++++|......+...+..+.+ ....+... +|+...+..+||++ ..|.+|
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~----~~~tii~~-tH~~~~~~~~~d~i-~~l~~G 213 (214)
T TIGR02673 163 EPTGNLDPDLSERILDLLKRLNK----RGTTVIVA-THDLSLVDRVAHRV-IILDDG 213 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH----cCCEEEEE-eCCHHHHHHhcCEE-EEecCC
Confidence 99999999997666655443321 11122122 49999999999988 666665
No 77
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.61 E-value=1.2e-16 Score=143.66 Aligned_cols=167 Identities=21% Similarity=0.244 Sum_probs=102.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH---------Hh--hcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------CQ--LFK 81 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l---------~~--~~~ 81 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|++|.|.++|.++... .. .|.
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 87 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL-----------DRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFV 87 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC-----------cCCCceeEEECCEehhhcchhHHHHHHhhcEEEE
Confidence 34678899999999999999999999999999999 689999999998765321 11 122
Q ss_pred CCC-CCCcceeeeeeccccccccc-C----ccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCC
Q 018809 82 PKS-AVPAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 82 ~~~-~~~~~l~~~D~~g~~~~~~~-~----~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~ 140 (350)
++. ..+..+++.|+..+...... . ......+++.+...+ .-+.+++++ .+|+++++|
T Consensus 88 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD-- 165 (218)
T cd03255 88 FQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILAD-- 165 (218)
T ss_pred eeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEc--
Confidence 222 12223344444332211000 0 000011111111000 015677887 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~ 199 (350)
||++++|....+.+...+..+.+. ....+... +|+...+. +||++ .+|++|+
T Consensus 166 -EP~~~LD~~~~~~l~~~l~~~~~~---~~~tii~~-sH~~~~~~-~~d~v-~~l~~G~ 217 (218)
T cd03255 166 -EPTGNLDSETGKEVMELLRELNKE---AGTTIVVV-THDPELAE-YADRI-IELRDGK 217 (218)
T ss_pred -CCcccCCHHHHHHHHHHHHHHHHh---cCCeEEEE-ECCHHHHh-hhcEE-EEeeCCc
Confidence 999999999876666554433210 11122122 49998876 89988 7777764
No 78
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.61 E-value=9.6e-17 Score=155.47 Aligned_cols=173 Identities=16% Similarity=0.185 Sum_probs=112.2
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-----hccCCC-CCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----LFKPKS-AVP 87 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-----~~~~~~-~~~ 87 (350)
-.+++.++.+|++++|+||||||||||+++|+|. .+|++|.|.++|.++..... .|.++. ...
T Consensus 19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~ 87 (369)
T PRK11000 19 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-----------EDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALY 87 (369)
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHhHCCEEEEeCCcccC
Confidence 3578899999999999999999999999999999 68999999999876532110 122222 223
Q ss_pred cceeeeeeccccccccc-C-c---cccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCchh
Q 018809 88 AFLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~~-~-~---~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~~l 147 (350)
..+++.|+..+...... . . .....+++.+...+. -+.+++++ .+|+++++| ||++.+
T Consensus 88 ~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLD---EPts~L 164 (369)
T PRK11000 88 PHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD---EPLSNL 164 (369)
T ss_pred CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccC
Confidence 34566666544321100 0 0 001111111111111 15677887 899999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 148 d~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|....+.+...+..+.+. ....+... +|+..++..+||++ .+|.+|+++..++
T Consensus 165 D~~~~~~l~~~L~~l~~~---~g~tvI~v-THd~~~~~~~~d~i-~vl~~G~i~~~g~ 217 (369)
T PRK11000 165 DAALRVQMRIEISRLHKR---LGRTMIYV-THDQVEAMTLADKI-VVLDAGRVAQVGK 217 (369)
T ss_pred CHHHHHHHHHHHHHHHHH---hCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 999876666654433221 11112122 49999999999999 8999999876554
No 79
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.6e-16 Score=144.83 Aligned_cols=173 Identities=15% Similarity=0.156 Sum_probs=110.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH------Hh--hccCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQ--LFKPKS 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l------~~--~~~~~~ 84 (350)
.-.+++..+++|++++|+|+||||||||+++|+|. .+|.+|.|.++|..+... .. .|.++.
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~ 88 (237)
T PRK11614 20 ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD-----------PRATSGRIVFDGKDITDWQTAKIMREAVAIVPEG 88 (237)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCCceEEECCEecCCCCHHHHHHhCEEEeccC
Confidence 44678899999999999999999999999999999 589999999998754221 11 122222
Q ss_pred -CCCcceeeeeecccccccccCccc---cchHHHHHH-HHHH--------------HHHHHhhc-CCCceeeecCCCCCC
Q 018809 85 -AVPAFLEIHDIAGLVRGAHEGQGL---GNSFLSHIR-AVDG--------------IFHVLRAF-EDPDIIHVDDSVDPV 144 (350)
Q Consensus 85 -~~~~~l~~~D~~g~~~~~~~~~~~---~~~~l~~l~-~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~ 144 (350)
.....+++.|+..+.......... ...+++.+. ..+. -+.+++++ .+|+++++| ||+
T Consensus 89 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlD---EPt 165 (237)
T PRK11614 89 RRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLD---EPS 165 (237)
T ss_pred cccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEc---Ccc
Confidence 222234455544332110000000 011112221 1111 15577777 899999999 999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 145 ~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+++|....+.+...+..+.+ ....+... +|+...+.++||++ .+|.+|+++..++
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~----~~~tiii~-sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 220 (237)
T PRK11614 166 LGLAPIIIQQIFDTIEQLRE----QGMTIFLV-EQNANQALKLADRG-YVLENGHVVLEDT 220 (237)
T ss_pred ccCCHHHHHHHHHHHHHHHH----CCCEEEEE-eCcHHHHHhhCCEE-EEEeCCEEEeeCC
Confidence 99999887665555433211 11122122 49999999999999 8899998876654
No 80
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.61 E-value=8.2e-17 Score=155.87 Aligned_cols=171 Identities=11% Similarity=0.200 Sum_probs=114.1
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-------hhccCCCCCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-------~~~~~~~~~~ 87 (350)
..++.++..|++++|+||||||||||+++|+|+ .+|++|.|.++|+.+..+. .+|+.. ..+
T Consensus 31 ~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~-~lf 98 (375)
T PRK09452 31 SNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF-----------ETPDSGRIMLDGQDITHVPAENRHVNTVFQSY-ALF 98 (375)
T ss_pred eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEecCc-ccC
Confidence 568899999999999999999999999999999 5899999999998653211 122222 233
Q ss_pred cceeeeeeccccccccc-C-cc---ccchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecCCCCCCchh
Q 018809 88 AFLEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVDPVRDL 147 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~~-~-~~---~~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~~~eP~~~l 147 (350)
..+++.|+..+...... . .. .....++.++..+.+ +.++|++ .+|+++++| ||++.+
T Consensus 99 p~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLD---EP~s~L 175 (375)
T PRK09452 99 PHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLD---ESLSAL 175 (375)
T ss_pred CCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCcC
Confidence 35677777655321110 0 00 001111111111111 6678888 899999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 148 d~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|....+.+...+..+.+. ....+.. .+|+..++..++|++ .+|.+|++...++
T Consensus 176 D~~~r~~l~~~L~~l~~~---~g~tiI~-vTHd~~ea~~laDri-~vl~~G~i~~~g~ 228 (375)
T PRK09452 176 DYKLRKQMQNELKALQRK---LGITFVF-VTHDQEEALTMSDRI-VVMRDGRIEQDGT 228 (375)
T ss_pred CHHHHHHHHHHHHHHHHh---cCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 998876666655433321 1111112 249999999999999 9999999876554
No 81
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=9e-17 Score=146.04 Aligned_cols=174 Identities=17% Similarity=0.232 Sum_probs=109.5
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--------Hh--hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQ--LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------~~--~~~~ 82 (350)
.=.++++++.+|++++|+|+||||||||+++|+|. .+|..|.|.++|.++... .. .|.+
T Consensus 20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~ 88 (233)
T cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL-----------ERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIF 88 (233)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEcccCCHHHHHHHHhheEEEc
Confidence 34678899999999999999999999999999999 689999999998764321 11 2233
Q ss_pred CC-CCCcceeeeeecccccccc--cCcc---ccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCC
Q 018809 83 KS-AVPAFLEIHDIAGLVRGAH--EGQG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 83 ~~-~~~~~l~~~D~~g~~~~~~--~~~~---~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
+. .....+++.|+..+..... .... ....+++.+...+ .-+.+++++ .+|+++++|
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD--- 165 (233)
T cd03258 89 QHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCD--- 165 (233)
T ss_pred cCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEec---
Confidence 32 2222345555443221000 0000 0011111111111 115677777 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+.+. ....+... +|+...+..+|+++ ..|++|+++..++
T Consensus 166 EP~~~LD~~~~~~l~~~l~~~~~~---~~~tvii~-sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 224 (233)
T cd03258 166 EATSALDPETTQSILALLRDINRE---LGLTIVLI-THEMEVVKRICDRV-AVMEKGEVVEEGT 224 (233)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHH---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 999999999876655554332211 01122122 49999999999999 8889998875543
No 82
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.61 E-value=1.1e-16 Score=143.25 Aligned_cols=165 Identities=19% Similarity=0.173 Sum_probs=101.6
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCCC-
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKSA- 85 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~~- 85 (350)
-.+++.++.+|+++||+|+||||||||+++|+|. .+|++|.|.++|..+... .. .|.++..
T Consensus 17 l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 85 (211)
T cd03225 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL-----------LGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPD 85 (211)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEEcccCCHHHHHhhceEEecChh
Confidence 4678899999999999999999999999999999 589999999998654211 11 1223221
Q ss_pred -CCcceeeeeeccccccccc-C----ccccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCC
Q 018809 86 -VPAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPV 144 (350)
Q Consensus 86 -~~~~l~~~D~~g~~~~~~~-~----~~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~ 144 (350)
.....++.|+..+...... . ......+++.+...+. -+.+++++ .+|+++++| ||+
T Consensus 86 ~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EPt 162 (211)
T cd03225 86 DQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD---EPT 162 (211)
T ss_pred hhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCc
Confidence 1122344444322110000 0 0000111111111111 15677777 899999999 999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcC
Q 018809 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (350)
Q Consensus 145 ~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g 198 (350)
+++|....+.+...+..+.+ + ...+... +|+...+..+||++ ..|.+|
T Consensus 163 ~~LD~~~~~~~~~~l~~~~~---~-~~tvi~~-sH~~~~~~~~~d~i-~~l~~G 210 (211)
T cd03225 163 AGLDPAGRRELLELLKKLKA---E-GKTIIIV-THDLDLLLELADRV-IVLEDG 210 (211)
T ss_pred ccCCHHHHHHHHHHHHHHHH---c-CCEEEEE-eCCHHHHHHhCCEE-EEEeCC
Confidence 99999987666555433221 1 1122122 49999999999988 666665
No 83
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.61 E-value=7.7e-17 Score=155.45 Aligned_cols=173 Identities=17% Similarity=0.255 Sum_probs=114.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcc--eEEEeCCcchhHHH-------hhccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE--ARVNIPDERFEWLC-------QLFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~--G~i~~~~~~l~~l~-------~~~~~~ 83 (350)
.-+.++..+..|++++|+||||||||||+++|+|+ ..|++ |.|.++|+.+.... .+++..
T Consensus 20 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~ 88 (362)
T TIGR03258 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF-----------VKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNY 88 (362)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCCEEEEECCEECCCCCHHHCCEEEEECCc
Confidence 34678899999999999999999999999999999 58889 99999987653211 122222
Q ss_pred CCCCcceeeeeeccccccccc-C-cc---ccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCC
Q 018809 84 SAVPAFLEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (350)
Q Consensus 84 ~~~~~~l~~~D~~g~~~~~~~-~-~~---~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP 143 (350)
..+..+++.++..+...... . .. .....++.++..+ --+.++|++ .+|+++++| ||
T Consensus 89 -~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLD---EP 164 (362)
T TIGR03258 89 -ALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLD---EP 164 (362)
T ss_pred -ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---Cc
Confidence 23335666666654321110 0 00 0011111111111 015678888 899999999 99
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 144 VRDLEVISAELRLKDIEFMERRIEDV-EKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 144 ~~~ld~~~~el~~~~l~~l~~~~~~~-~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++.+|....+.+...+..+.+. . ...+... +|+..++..++|++ .+|++|+++..++
T Consensus 165 ~s~LD~~~r~~l~~~l~~l~~~---~~g~til~v-THd~~ea~~l~dri-~vl~~G~i~~~g~ 222 (362)
T TIGR03258 165 LSALDANIRANMREEIAALHEE---LPELTILCV-THDQDDALTLADKA-GIMKDGRLAAHGE 222 (362)
T ss_pred cccCCHHHHHHHHHHHHHHHHh---CCCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 9999999876666655433221 1 1122122 49999999999999 9999999886654
No 84
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.61 E-value=2.2e-16 Score=143.33 Aligned_cols=172 Identities=15% Similarity=0.226 Sum_probs=109.0
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HH---hhccCCC-
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC---QLFKPKS- 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~---~~~~~~~- 84 (350)
-.++++++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|..+.. .. ..|.++.
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 84 (232)
T cd03218 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL-----------VKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEA 84 (232)
T ss_pred eccceeEecCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEecccCCHhHHHhccEEEecCCc
Confidence 3678899999999999999999999999999999 58999999999875421 11 1122222
Q ss_pred CCCcceeeeeeccccccccc-C-cc---ccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCC
Q 018809 85 AVPAFLEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPV 144 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~-~-~~---~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~ 144 (350)
.....+++.|+..+...... . .. ....+++.+...+. -+.+++++ .+|+++++| ||+
T Consensus 85 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt 161 (232)
T cd03218 85 SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLD---EPF 161 (232)
T ss_pred cccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEec---CCc
Confidence 22223455554433211100 0 00 00111111111111 15677777 899999999 999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 145 ~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+++|....+.+...+..+.+ ....+... +|+...+..+|+++ .+|++|++...++
T Consensus 162 ~~LD~~~~~~~~~~l~~~~~----~~~tii~~-sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 216 (232)
T cd03218 162 AGVDPIAVQDIQKIIKILKD----RGIGVLIT-DHNVRETLSITDRA-YIIYEGKVLAEGT 216 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHH----CCCEEEEE-eCCHHHHHHhCCEE-EEEECCeEEEEeC
Confidence 99999987666555433221 11122122 49999999999999 8889998875543
No 85
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=2.1e-16 Score=141.40 Aligned_cols=168 Identities=20% Similarity=0.321 Sum_probs=104.9
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH--h-hccCCC-CCCcc
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--Q-LFKPKS-AVPAF 89 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~--~-~~~~~~-~~~~~ 89 (350)
-.+++.++.+|++++|+|+||||||||+++|+|. .+|++|.|.++|.++.... . .|.++. ..+..
T Consensus 16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~ 84 (210)
T cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI-----------ILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPK 84 (210)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCCchhHHHHccEEEeccCCcCCcC
Confidence 3678889999999999999999999999999999 5799999999997653211 1 122222 22223
Q ss_pred eeeeeeccccccccc--C---ccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCchhHH
Q 018809 90 LEIHDIAGLVRGAHE--G---QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (350)
Q Consensus 90 l~~~D~~g~~~~~~~--~---~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (350)
+++.|+..+...... . ......+++.+...+ .-+.+++++ .+|+++++| ||++++|.
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllD---EP~~~LD~ 161 (210)
T cd03269 85 MKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILD---EPFSGLDP 161 (210)
T ss_pred CcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCH
Confidence 444444332211000 0 000011111111100 015577777 899999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc
Q 018809 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (350)
Q Consensus 150 ~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~ 201 (350)
...+.+...+..+.+ + ...+... +|+...+..+|+++ ..|.+|+++
T Consensus 162 ~~~~~~~~~l~~~~~---~-~~tii~~-sH~~~~~~~~~d~i-~~l~~g~i~ 207 (210)
T cd03269 162 VNVELLKDVIRELAR---A-GKTVILS-THQMELVEELCDRV-LLLNKGRAV 207 (210)
T ss_pred HHHHHHHHHHHHHHH---C-CCEEEEE-CCCHHHHHHhhhEE-EEEeCCEEE
Confidence 887655555432211 0 1112122 49999999999998 778888764
No 86
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.60 E-value=3.7e-16 Score=136.82 Aligned_cols=152 Identities=19% Similarity=0.284 Sum_probs=97.9
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH------h--hccCCC--
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC------Q--LFKPKS-- 84 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~------~--~~~~~~-- 84 (350)
.+++.++++|++++|+|+||||||||+++|+|. .+|++|.+.++|.++.... . .|.++.
T Consensus 17 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 85 (182)
T cd03215 17 RDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL-----------RPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRK 85 (182)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCccCHHHHHhCCeEEecCCcc
Confidence 567889999999999999999999999999999 5899999999987653211 0 121221
Q ss_pred --CCCcceeeeeecccccccccCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHH
Q 018809 85 --AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEF 161 (350)
Q Consensus 85 --~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~ 161 (350)
.....+++.|+..+... .+.|++ ++ +.+++++ .+|+++++| ||++++|....+.+...+..
T Consensus 86 ~~~~~~~~t~~e~l~~~~~----LS~G~~--qr-------l~la~al~~~p~llllD---EP~~~LD~~~~~~l~~~l~~ 149 (182)
T cd03215 86 REGLVLDLSVAENIALSSL----LSGGNQ--QK-------VVLARWLARDPRVLILD---EPTRGVDVGAKAEIYRLIRE 149 (182)
T ss_pred cCcccCCCcHHHHHHHHhh----cCHHHH--HH-------HHHHHHHccCCCEEEEC---CCCcCCCHHHHHHHHHHHHH
Confidence 11112233333222110 111111 22 3455555 699999999 99999999987665554433
Q ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCC
Q 018809 162 MERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (350)
Q Consensus 162 l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~ 199 (350)
+.+ -...+... +|+...+..+|+++ .+|.+|+
T Consensus 150 ~~~----~~~tiii~-sh~~~~~~~~~d~v-~~l~~G~ 181 (182)
T cd03215 150 LAD----AGKAVLLI-SSELDELLGLCDRI-LVMYEGR 181 (182)
T ss_pred HHH----CCCEEEEE-eCCHHHHHHhCCEE-EEecCCc
Confidence 211 01111122 49999999999988 7777764
No 87
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.60 E-value=2.3e-16 Score=141.82 Aligned_cols=169 Identities=19% Similarity=0.243 Sum_probs=106.7
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH----Hh--hccCCC-C
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQ--LFKPKS-A 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l----~~--~~~~~~-~ 85 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|++|.|.++|.++... .. .|.++. .
T Consensus 20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~ 88 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL-----------LEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTG 88 (218)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------cCCCCceEEECCEEcccCHHHHHhhEEEecCCcc
Confidence 44677899999999999999999999999999999 689999999998765321 11 122222 2
Q ss_pred CCcceeeeeeccccccccc--C---ccccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCc
Q 018809 86 VPAFLEIHDIAGLVRGAHE--G---QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVR 145 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~--~---~~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~ 145 (350)
.+..+++.|+..+...... . .......++.+...+. -+.+++++ .+|+++++| ||++
T Consensus 89 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD---EPt~ 165 (218)
T cd03266 89 LYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLD---EPTT 165 (218)
T ss_pred cCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEc---CCCc
Confidence 2233455554432211000 0 0000111111111111 15677887 899999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc
Q 018809 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (350)
Q Consensus 146 ~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~ 201 (350)
++|....+.+...+..+.+ ....+.. .+|+...+..+++++ ..|.+|++.
T Consensus 166 ~LD~~~~~~l~~~l~~~~~----~~~tii~-~tH~~~~~~~~~d~i-~~l~~G~i~ 215 (218)
T cd03266 166 GLDVMATRALREFIRQLRA----LGKCILF-STHIMQEVERLCDRV-VVLHRGRVV 215 (218)
T ss_pred CCCHHHHHHHHHHHHHHHH----CCCEEEE-EeCCHHHHHHhcCEE-EEEECCEEe
Confidence 9999987665555433211 1111212 249999999999998 788888764
No 88
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.60 E-value=6.6e-16 Score=138.36 Aligned_cols=166 Identities=19% Similarity=0.239 Sum_probs=103.1
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPKS 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~~ 84 (350)
=.++++++.+|+++||+|+||||||||+++|+|. .+|.+|.|.++|.++.. ... .|.++.
T Consensus 16 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 84 (213)
T cd03262 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL-----------EEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQ 84 (213)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCccchhHHHHHhcceEEecc
Confidence 3678899999999999999999999999999999 57899999999875421 111 122222
Q ss_pred -CCCcceeeeeecccccccccC------ccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCC
Q 018809 85 -AVPAFLEIHDIAGLVRGAHEG------QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (350)
Q Consensus 85 -~~~~~l~~~D~~g~~~~~~~~------~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~e 142 (350)
.....+++.|...+......+ ......+++.+.... .-+.+++++ .+|+++++| |
T Consensus 85 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---E 161 (213)
T cd03262 85 FNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFD---E 161 (213)
T ss_pred cccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 222234555544332100000 000011111111100 015577777 899999999 9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCC
Q 018809 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (350)
Q Consensus 143 P~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~ 199 (350)
|++++|....+.+...+..+.+ ....+... +|+...+..+|+++ .+|.+|+
T Consensus 162 P~~~LD~~~~~~l~~~l~~~~~----~~~tvi~~-sh~~~~~~~~~d~i-~~l~~g~ 212 (213)
T cd03262 162 PTSALDPELVGEVLDVMKDLAE----EGMTMVVV-THEMGFAREVADRV-IFMDDGR 212 (213)
T ss_pred CccCCCHHHHHHHHHHHHHHHH----cCCEEEEE-eCCHHHHHHhCCEE-EEEeCCc
Confidence 9999999887665555443321 11122122 49999999999988 6777664
No 89
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.60 E-value=2e-15 Score=148.36 Aligned_cols=173 Identities=20% Similarity=0.267 Sum_probs=117.6
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH----------Hhhcc
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQLFK 81 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l----------~~~~~ 81 (350)
++-+.++..+++|++.+|+|.||||||||+|+|+|. ..|++|.|.++|+..... ..+||
T Consensus 22 ~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv-----------~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~Q 90 (500)
T COG1129 22 KALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV-----------YPPDSGEILIDGKPVAFSSPRDALAAGIATVHQ 90 (500)
T ss_pred eeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc-----------ccCCCceEEECCEEccCCCHHHHHhCCcEEEee
Confidence 455889999999999999999999999999999999 589999999999865321 11344
Q ss_pred CCCCCCcceeeeeecccccccccCcc------ccch---HHHHHHH---HH-----------HHHHHHhhc-CCCceeee
Q 018809 82 PKSAVPAFLEIHDIAGLVRGAHEGQG------LGNS---FLSHIRA---VD-----------GIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 82 ~~~~~~~~l~~~D~~g~~~~~~~~~~------~~~~---~l~~l~~---~d-----------~~l~vv~a~-~~~~vl~l 137 (350)
.-..+| ++++.++..++.......+ +..+ .++.+.. .+ -++.+++|+ .+++++++
T Consensus 91 El~L~p-~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIl 169 (500)
T COG1129 91 ELSLVP-NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLIL 169 (500)
T ss_pred chhccC-CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 333433 5777777766655433211 1111 1221111 11 125688888 78889999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++.+..-+.+.++..+..+.++ ...+.+- +|.++++.++||++ .+|.+|+.+...+
T Consensus 170 D---EPTaaLt~~E~~~Lf~~ir~Lk~~----Gv~ii~I-SHrl~Ei~~i~Dri-tVlRDG~~v~~~~ 228 (500)
T COG1129 170 D---EPTAALTVKETERLFDLIRRLKAQ----GVAIIYI-SHRLDEVFEIADRI-TVLRDGRVVGTRP 228 (500)
T ss_pred c---CCcccCCHHHHHHHHHHHHHHHhC----CCEEEEE-cCcHHHHHHhcCEE-EEEeCCEEeeecc
Confidence 9 999998887765555544332211 1001011 39999999999999 9999999876543
No 90
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.60 E-value=2.2e-16 Score=141.69 Aligned_cols=171 Identities=18% Similarity=0.209 Sum_probs=108.5
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----hhccCCC-CCCc
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPA 88 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~~~~~~~-~~~~ 88 (350)
.+++.++.+|++++|+|+||||||||+++|+|. .+|++|.|.++|..+.... ..|.++. ..+.
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~ 83 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGF-----------IEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFA 83 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEcccCChhccceEEEeccCccCC
Confidence 578999999999999999999999999999999 6899999999987543211 1122222 2222
Q ss_pred ceeeeeecccccc-ccc----CccccchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecCCCCCCchhH
Q 018809 89 FLEIHDIAGLVRG-AHE----GQGLGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (350)
Q Consensus 89 ~l~~~D~~g~~~~-~~~----~~~~~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (350)
.+++.|+..+... ... ........++.++..+.. +.+++++ .+|+++++| ||++.+|
T Consensus 84 ~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EPt~~LD 160 (213)
T TIGR01277 84 HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLD---EPFSALD 160 (213)
T ss_pred CCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCCccCC
Confidence 3455555433210 000 000011112221111111 5677777 899999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 149 ~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
....+.+...+..+.+. ....+... +|+...+.++||++ .+|.+|++...+
T Consensus 161 ~~~~~~~~~~l~~~~~~---~~~tii~v-sh~~~~~~~~~d~v-~~l~~g~i~~~~ 211 (213)
T TIGR01277 161 PLLREEMLALVKQLCSE---RQRTLLMV-THHLSDARAIASQI-AVVSQGKIKVVS 211 (213)
T ss_pred HHHHHHHHHHHHHHHHh---cCCEEEEE-eCCHHHHHhhcCeE-EEEECCeEEEec
Confidence 99976665554433211 11112122 49999989999999 788888876544
No 91
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=3.7e-16 Score=136.31 Aligned_cols=152 Identities=21% Similarity=0.280 Sum_probs=96.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH----h-----hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----Q-----LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~----~-----~~~~~ 83 (350)
.-.++++.+.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++.... . .|.++
T Consensus 15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 83 (178)
T cd03229 15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL-----------EEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQ 83 (178)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccchhHHHHhhcEEEEec
Confidence 44678899999999999999999999999999999 5889999999987543221 0 11111
Q ss_pred C-CCCcceeeeeecccccccccCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHH
Q 018809 84 S-AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEF 161 (350)
Q Consensus 84 ~-~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~ 161 (350)
. ......++.|...+. .+.|++ +++ .+++++ .+|+++++| ||+.++|......+...+..
T Consensus 84 ~~~~~~~~t~~~~l~~~------lS~G~~--qr~-------~la~al~~~p~llilD---EP~~~LD~~~~~~l~~~l~~ 145 (178)
T cd03229 84 DFALFPHLTVLENIALG------LSGGQQ--QRV-------ALARALAMDPDVLLLD---EPTSALDPITRREVRALLKS 145 (178)
T ss_pred CCccCCCCCHHHheeec------CCHHHH--HHH-------HHHHHHHCCCCEEEEe---CCcccCCHHHHHHHHHHHHH
Confidence 1 011111222222111 111221 333 444555 699999999 99999999997666555443
Q ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcC
Q 018809 162 MERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (350)
Q Consensus 162 l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g 198 (350)
+.+. ....+... +|+...+..+||++ ..|.+|
T Consensus 146 ~~~~---~~~tiii~-sH~~~~~~~~~d~i-~~l~~g 177 (178)
T cd03229 146 LQAQ---LGITVVLV-THDLDEAARLADRV-VVLRDG 177 (178)
T ss_pred HHHh---cCCEEEEE-eCCHHHHHHhcCEE-EEEeCC
Confidence 3211 01111122 49999888889887 566655
No 92
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.60 E-value=3.4e-16 Score=142.94 Aligned_cols=173 Identities=16% Similarity=0.172 Sum_probs=109.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~ 83 (350)
.-.++++++.+|++++|+|+||||||||+++|+|. .+|++|.|.++|.++.. ... .|.++
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 84 (240)
T PRK09493 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL-----------EEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQ 84 (240)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCChhHHHHhhceEEEec
Confidence 34678899999999999999999999999999999 68999999999876431 111 12222
Q ss_pred C-CCCcceeeeeeccccccc-cc-C-c---cccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCC
Q 018809 84 S-AVPAFLEIHDIAGLVRGA-HE-G-Q---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 84 ~-~~~~~l~~~D~~g~~~~~-~~-~-~---~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
. .....+++.|+..+.... .. . . .....+++.+...+ .-+.+++++ .+|+++++|
T Consensus 85 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD--- 161 (240)
T PRK09493 85 QFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFD--- 161 (240)
T ss_pred ccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEc---
Confidence 2 222234555544332100 00 0 0 00011111111111 115677887 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+ ....+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 162 EP~~~LD~~~~~~l~~~l~~~~~----~~~tiii~-sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 219 (240)
T PRK09493 162 EPTSALDPELRHEVLKVMQDLAE----EGMTMVIV-THEIGFAEKVASRL-IFIDKGRIAEDGD 219 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH----cCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEeeCC
Confidence 99999999987666555433211 11122122 49999999999999 8889998876554
No 93
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.60 E-value=3.4e-16 Score=145.50 Aligned_cols=173 Identities=17% Similarity=0.150 Sum_probs=109.5
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--------Hh--hccCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQ--LFKPK 83 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------~~--~~~~~ 83 (350)
-.++++++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++... .. .|.++
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q 91 (269)
T PRK11831 23 FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ-----------IAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQ 91 (269)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEccccChhhHHHHhhcEEEEec
Confidence 4678899999999999999999999999999999 579999999998754311 11 12222
Q ss_pred C-CCCcceeeeeecccccccccC--c----cccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCC
Q 018809 84 S-AVPAFLEIHDIAGLVRGAHEG--Q----GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 84 ~-~~~~~l~~~D~~g~~~~~~~~--~----~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
. .....+++.|+..+....... . ......+..+...+ .-+.+++++ .+|+++++|
T Consensus 92 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD--- 168 (269)
T PRK11831 92 SGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFD--- 168 (269)
T ss_pred ccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---
Confidence 2 222234555554332110000 0 00001111111111 115577777 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+. ....+... +|+...+..+|+++ .+|++|+++..++
T Consensus 169 EPt~~LD~~~~~~l~~~l~~~~~~---~g~tiiiv-sH~~~~~~~~~d~v-~~l~~G~i~~~g~ 227 (269)
T PRK11831 169 EPFVGQDPITMGVLVKLISELNSA---LGVTCVVV-SHDVPEVLSIADHA-YIVADKKIVAHGS 227 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHh---cCcEEEEE-ecCHHHHHHhhCEE-EEEECCEEEEeCC
Confidence 999999999876666554433211 11122122 49999999999999 8889998876554
No 94
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.60 E-value=9e-16 Score=130.23 Aligned_cols=59 Identities=41% Similarity=0.601 Sum_probs=50.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
.|+++|.||+|||||||+|||.+..++|||++|.++..|.+.+.+. .+.++|+||++..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~-----------------~~~lvDlPG~ysl 60 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQ-----------------QVELVDLPGIYSL 60 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTE-----------------EEEEEE----SSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCc-----------------eEEEEECCCcccC
Confidence 6899999999999999999999988899999999999999998763 5899999998654
No 95
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.60 E-value=1.3e-16 Score=148.16 Aligned_cols=173 Identities=20% Similarity=0.238 Sum_probs=108.7
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH---------H--hhccC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------C--QLFKP 82 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l---------~--~~~~~ 82 (350)
-.+++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++... . ..|.+
T Consensus 40 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl-----------~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~ 108 (269)
T cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL-----------IEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVF 108 (269)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEccccChhhhhhhhcCcEEEEe
Confidence 3678899999999999999999999999999999 689999999998754321 0 01222
Q ss_pred CC-CCCcceeeeeeccccccccc--Cc---cccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCC
Q 018809 83 KS-AVPAFLEIHDIAGLVRGAHE--GQ---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 83 ~~-~~~~~l~~~D~~g~~~~~~~--~~---~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~ 141 (350)
+. .....+++.|+..+...... .. .....+++.+...+. -+.+++++ .+|+++++|
T Consensus 109 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLD--- 185 (269)
T cd03294 109 QSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMD--- 185 (269)
T ss_pred cCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---
Confidence 22 22223444444332210000 00 000111111111111 15577777 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+. ....+... +|+...+..+||++ .+|.+|++...++
T Consensus 186 EPt~~LD~~~~~~l~~~l~~~~~~---~g~tiii~-tH~~~~~~~~~d~v-~~l~~G~i~~~g~ 244 (269)
T cd03294 186 EAFSALDPLIRREMQDELLRLQAE---LQKTIVFI-THDLDEALRLGDRI-AIMKDGRLVQVGT 244 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHh---cCCEEEEE-eCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 999999999976666655433221 11122122 49999999999999 8889998765543
No 96
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.60 E-value=1.6e-16 Score=141.80 Aligned_cols=167 Identities=25% Similarity=0.325 Sum_probs=106.2
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-------------h
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------------Q 78 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-------------~ 78 (350)
+.-+.++.+|++|+.++|+||+|||||||+|+|.|+ ..|++|.+.++|.++..+. -
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l-----------d~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGf 87 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL-----------DKPTSGEVLINGKDLTKLSEKELAKLRRKKIGF 87 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCceEEECCEEcCcCCHHHHHHHHHHhEEE
Confidence 355788999999999999999999999999999999 4889999999996543221 1
Q ss_pred hccCCCCCCcceeeeeecccc---cccccC--ccccchHHHHHHHHH---------------HHHHHHhhc-CCCceeee
Q 018809 79 LFKPKSAVPAFLEIHDIAGLV---RGAHEG--QGLGNSFLSHIRAVD---------------GIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 79 ~~~~~~~~~~~l~~~D~~g~~---~~~~~~--~~~~~~~l~~l~~~d---------------~~l~vv~a~-~~~~vl~l 137 (350)
+||....++ .+++.++..+. .....+ .......++.+...+ --+.++||+ .+|++++.
T Consensus 88 vFQ~~nLl~-~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilA 166 (226)
T COG1136 88 VFQNFNLLP-DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILA 166 (226)
T ss_pred ECccCCCCC-CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEe
Confidence 344444444 45666665542 111110 000001111111110 115577777 79999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~ 199 (350)
| ||+..+|..+.+.++..+..+.+.. ..++ .-.+|+... ...|||+ ..|.+|+
T Consensus 167 D---EPTgnLD~~t~~~V~~ll~~~~~~~---g~ti-i~VTHd~~l-A~~~dr~-i~l~dG~ 219 (226)
T COG1136 167 D---EPTGNLDSKTAKEVLELLRELNKER---GKTI-IMVTHDPEL-AKYADRV-IELKDGK 219 (226)
T ss_pred e---CccccCChHHHHHHHHHHHHHHHhc---CCEE-EEEcCCHHH-HHhCCEE-EEEeCCe
Confidence 9 9999999999876666554433221 1111 112488754 4588888 7777776
No 97
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.60 E-value=2.3e-16 Score=152.11 Aligned_cols=171 Identities=15% Similarity=0.126 Sum_probs=110.1
Q ss_pred cccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH---------Hh--hccCCC
Q 018809 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------CQ--LFKPKS 84 (350)
Q Consensus 16 ~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l---------~~--~~~~~~ 84 (350)
.++.++.+|++++|+||||||||||+++|+|. .+|++|.|.++|+++... .. .|.++.
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~ 83 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGL-----------TRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQE 83 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECccCccccccchhhCCeEEEecC
Confidence 68889999999999999999999999999999 589999999998765311 00 122222
Q ss_pred -CCCcceeeeeecccccccccCcc---ccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCc
Q 018809 85 -AVPAFLEIHDIAGLVRGAHEGQG---LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVR 145 (350)
Q Consensus 85 -~~~~~l~~~D~~g~~~~~~~~~~---~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~ 145 (350)
.....+++.|+..+......... ....+++.+...+. -+.+++++ .+|+++++| ||++
T Consensus 84 ~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLD---EPts 160 (354)
T TIGR02142 84 ARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMD---EPLA 160 (354)
T ss_pred CccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCCc
Confidence 22223455555443211100000 00111111111111 15677887 899999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 146 ~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
.+|....+.+...+..+.+. ....+... +|+...+..++|++ .+|.+|+++..++
T Consensus 161 ~LD~~~~~~l~~~L~~l~~~---~g~tiiiv-tH~~~~~~~~~d~i-~~l~~G~i~~~g~ 215 (354)
T TIGR02142 161 ALDDPRKYEILPYLERLHAE---FGIPILYV-SHSLQEVLRLADRV-VVLEDGRVAAAGP 215 (354)
T ss_pred CCCHHHHHHHHHHHHHHHHh---cCCEEEEE-ecCHHHHHHhCCEE-EEEeCCEEEEECC
Confidence 99999977666655433221 11122122 49999999999999 8999999876554
No 98
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.60 E-value=1.3e-16 Score=145.33 Aligned_cols=171 Identities=18% Similarity=0.245 Sum_probs=107.5
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HH---hhccCCC-
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC---QLFKPKS- 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~---~~~~~~~- 84 (350)
-.+++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|..+.. .. ..|.++.
T Consensus 16 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 84 (236)
T cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF-----------LRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIP 84 (236)
T ss_pred ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCCceEEECCEECCCCCHHHHHhcCEEEEeccc
Confidence 4678899999999999999999999999999999 68899999999865432 11 1122222
Q ss_pred CCCcceeeeeecccccccccCc------------c---ccchHHHHHHHHH--------------HHHHHHhhc-CCCce
Q 018809 85 AVPAFLEIHDIAGLVRGAHEGQ------------G---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDI 134 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~~------------~---~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~v 134 (350)
..+..+++.|...+........ . ....+++.+...+ .-+.+++++ .+|++
T Consensus 85 ~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 164 (236)
T cd03219 85 RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKL 164 (236)
T ss_pred ccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 2222344444433221100000 0 0011111111100 015677777 89999
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 135 l~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
+++| ||++++|......+...+..+.+ ....+... +|+...+..+||++ .+|++|+++..+
T Consensus 165 lllD---EPt~~LD~~~~~~l~~~l~~~~~----~~~tii~v-sH~~~~~~~~~d~i-~~l~~G~i~~~~ 225 (236)
T cd03219 165 LLLD---EPAAGLNPEETEELAELIRELRE----RGITVLLV-EHDMDVVMSLADRV-TVLDQGRVIAEG 225 (236)
T ss_pred EEEc---CCcccCCHHHHHHHHHHHHHHHH----CCCEEEEE-ecCHHHHHHhCCEE-EEEeCCEEEeec
Confidence 9999 99999999887666555433211 11122122 49999999999999 888999876554
No 99
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=1.4e-16 Score=148.73 Aligned_cols=175 Identities=15% Similarity=0.149 Sum_probs=108.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~--~~~~~~~ 85 (350)
.-..++.++.+|+++||+|+||||||||+++|+|. .+|++|.|.++|..+.. +.. .|.++..
T Consensus 19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 87 (277)
T PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI-----------LKPTSGSVLIRGEPITKENIREVRKFVGLVFQNP 87 (277)
T ss_pred eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHhheEEEecCc
Confidence 45788899999999999999999999999999999 68999999999875432 111 1222221
Q ss_pred --CCcceeeeeeccccccccc-Ccc----ccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCC
Q 018809 86 --VPAFLEIHDIAGLVRGAHE-GQG----LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDP 143 (350)
Q Consensus 86 --~~~~l~~~D~~g~~~~~~~-~~~----~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP 143 (350)
.....++.|...+...... ... ....+++.+...+. -+.+++++ .+|+++++| ||
T Consensus 88 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilD---EP 164 (277)
T PRK13652 88 DDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLD---EP 164 (277)
T ss_pred ccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CC
Confidence 1112344443322110000 000 00011111111010 15577777 899999999 99
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 144 ~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
++++|......+...+..+.+. ....+... +|+...+.++||++ .+|.+|+++..++.
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~~---~g~tvli~-tH~~~~~~~~~drv-~~l~~G~i~~~g~~ 222 (277)
T PRK13652 165 TAGLDPQGVKELIDFLNDLPET---YGMTVIFS-THQLDLVPEMADYI-YVMDKGRIVAYGTV 222 (277)
T ss_pred cccCCHHHHHHHHHHHHHHHHh---cCCEEEEE-ecCHHHHHHhCCEE-EEEECCeEEEECCH
Confidence 9999999876655554333221 11122122 49999999999999 88999998876543
No 100
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=1.4e-16 Score=154.54 Aligned_cols=171 Identities=14% Similarity=0.222 Sum_probs=113.9
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-------hhccCCCCCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAVP 87 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-------~~~~~~~~~~ 87 (350)
.+++.++.+|++++|+||||||||||+++|+|+ .+|++|.|.++|+.+..+. .+|+.. ..+
T Consensus 36 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~-~lf 103 (377)
T PRK11607 36 DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF-----------EQPTAGQIMLDGVDLSHVPPYQRPINMMFQSY-ALF 103 (377)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEeCCC-ccC
Confidence 578899999999999999999999999999999 5899999999997653221 123322 233
Q ss_pred cceeeeeeccccccccc-C-ccccchH---HHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCchh
Q 018809 88 AFLEIHDIAGLVRGAHE-G-QGLGNSF---LSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~~-~-~~~~~~~---l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~~l 147 (350)
.++++.|+..+...... . .....++ ++.+...+. -+.++|++ .+|+++++| ||++.+
T Consensus 104 p~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLD---EP~s~L 180 (377)
T PRK11607 104 PHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLD---EPMGAL 180 (377)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccC
Confidence 45677777655422110 0 0000111 111111111 15678888 899999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 148 d~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|....+.+...+..+.+. ....+.. .+|+..++..++|++ .+|.+|++...++
T Consensus 181 D~~~r~~l~~~l~~l~~~---~g~tii~-vTHd~~ea~~laDri-~vl~~G~i~~~g~ 233 (377)
T PRK11607 181 DKKLRDRMQLEVVDILER---VGVTCVM-VTHDQEEAMTMAGRI-AIMNRGKFVQIGE 233 (377)
T ss_pred CHHHHHHHHHHHHHHHHh---cCCEEEE-EcCCHHHHHHhCCEE-EEEeCCEEEEEcC
Confidence 999876665554333221 1111111 249999999999999 8999999876654
No 101
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.59 E-value=4.7e-16 Score=140.68 Aligned_cols=170 Identities=18% Similarity=0.225 Sum_probs=106.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH---------h-hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---------Q-LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~---------~-~~~~ 82 (350)
.-.+++.++++|++++|+|+||||||||+++|+|. .+|.+|.|.++|..+.... . .|.+
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~ 88 (228)
T cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL-----------LKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVF 88 (228)
T ss_pred eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEEccccchhhHHHhhccEEEEe
Confidence 34678999999999999999999999999999999 5899999999987653211 1 1222
Q ss_pred CCC---CCcceeeeeecccccccc---cCccccc----hHHHHHHHH-HH--------------HHHHHhhc-CCCceee
Q 018809 83 KSA---VPAFLEIHDIAGLVRGAH---EGQGLGN----SFLSHIRAV-DG--------------IFHVLRAF-EDPDIIH 136 (350)
Q Consensus 83 ~~~---~~~~l~~~D~~g~~~~~~---~~~~~~~----~~l~~l~~~-d~--------------~l~vv~a~-~~~~vl~ 136 (350)
+.. ....+++.|+..+..... ....... ..++.+... +. -+.+++++ .+|++++
T Consensus 89 q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 168 (228)
T cd03257 89 QDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLI 168 (228)
T ss_pred cCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 221 222334444432210000 0000000 111111110 00 15577777 8999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~ 201 (350)
+| ||++++|....+.+...+..+.+ .....+... +|+...+..+||++ .+|++|+++
T Consensus 169 LD---EPt~~LD~~~~~~l~~~l~~~~~---~~~~tii~~-sH~~~~~~~~~d~i-~~l~~G~i~ 225 (228)
T cd03257 169 AD---EPTSALDVSVQAQILDLLKKLQE---ELGLTLLFI-THDLGVVAKIADRV-AVMYAGKIV 225 (228)
T ss_pred ec---CCCCCCCHHHHHHHHHHHHHHHH---HcCCEEEEE-eCCHHHHHHhcCeE-EEEeCCEEE
Confidence 99 99999999987666555443321 111122122 49999999999999 788888764
No 102
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.59 E-value=2e-15 Score=133.43 Aligned_cols=176 Identities=18% Similarity=0.243 Sum_probs=115.4
Q ss_pred CCCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh--------hccC
Q 018809 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--------LFKP 82 (350)
Q Consensus 11 ~~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~--------~~~~ 82 (350)
.+.-..++..++.|++++|+|+||||||||+++|+|. .++.+|.|.+.|+++..++. .|.|
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl-----------~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VP 84 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL-----------VRPRSGRIIFDGEDITGLPPHERARLGIAYVP 84 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeeEEECCeecCCCCHHHHHhCCeEeCc
Confidence 3445678899999999999999999999999999999 68889999999988765432 3555
Q ss_pred C-CCCCcceeeeeecccccccccC----ccccchHHH---HHH------------HHHHHHHHHhhc-CCCceeeecCCC
Q 018809 83 K-SAVPAFLEIHDIAGLVRGAHEG----QGLGNSFLS---HIR------------AVDGIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 83 ~-~~~~~~l~~~D~~g~~~~~~~~----~~~~~~~l~---~l~------------~~d~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
+ +.+...+++.++.-++...... ........+ .++ .-.-.+.+.||+ .+|++++||
T Consensus 85 egR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLD--- 161 (237)
T COG0410 85 EGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLD--- 161 (237)
T ss_pred ccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEec---
Confidence 4 4556678888877654222111 000000000 000 011226788888 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||+.++.+.--+.+...+..+.+.- ...+ .-...+.....++.|+. .+|+.|+++..|+
T Consensus 162 EPs~GLaP~iv~~I~~~i~~l~~~~---g~tI-lLVEQn~~~Al~iaDr~-yvle~Griv~~G~ 220 (237)
T COG0410 162 EPSEGLAPKIVEEIFEAIKELRKEG---GMTI-LLVEQNARFALEIADRG-YVLENGRIVLSGT 220 (237)
T ss_pred CCccCcCHHHHHHHHHHHHHHHHcC---CcEE-EEEeccHHHHHHhhCEE-EEEeCCEEEEecC
Confidence 9999998866433333332222110 0000 00125666778888998 8899999988775
No 103
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.9e-16 Score=152.63 Aligned_cols=171 Identities=15% Similarity=0.186 Sum_probs=109.3
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH---------Hh--hccCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------CQ--LFKPK 83 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l---------~~--~~~~~ 83 (350)
.++++++.+|++++|+||||||||||+++|+|. .+|++|.|.++|..+... .. .|.++
T Consensus 15 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q 83 (352)
T PRK11144 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGL-----------TRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQ 83 (352)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccccccccchhhCCEEEEcC
Confidence 368999999999999999999999999999999 689999999988654311 00 11122
Q ss_pred C-CCCcceeeeeecccccccccCccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCchh
Q 018809 84 S-AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (350)
Q Consensus 84 ~-~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~l 147 (350)
. .....+++.|+..+..... .......+++.+...+ .-+.+++++ .+|+++++| ||++.+
T Consensus 84 ~~~l~~~~tv~enl~~~~~~~-~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLD---EPts~L 159 (352)
T PRK11144 84 DARLFPHYKVRGNLRYGMAKS-MVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMD---EPLASL 159 (352)
T ss_pred CcccCCCCcHHHHHHhhhhhh-hHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc---CCcccC
Confidence 1 2222345555443321100 0000111111111111 115677777 899999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 148 d~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|....+.+...+..+.+. ....+... +|+..++..+||++ .+|.+|+++..++
T Consensus 160 D~~~~~~l~~~L~~l~~~---~g~tii~v-THd~~~~~~~~d~i-~~l~~G~i~~~g~ 212 (352)
T PRK11144 160 DLPRKRELLPYLERLARE---INIPILYV-SHSLDEILRLADRV-VVLEQGKVKAFGP 212 (352)
T ss_pred CHHHHHHHHHHHHHHHHh---cCCeEEEE-ecCHHHHHHhCCEE-EEEeCCEEEEecC
Confidence 999876666654433221 11122122 49999999999999 8999999876554
No 104
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.59 E-value=2.9e-16 Score=143.48 Aligned_cols=172 Identities=17% Similarity=0.192 Sum_probs=108.9
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----H---hhccCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C---QLFKPKS 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~---~~~~~~~ 84 (350)
.-.++++++.+|++++|+|+||||||||+++|+|. .+|++|.|.++|..+... . -.|.++.
T Consensus 17 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~ 85 (242)
T TIGR03411 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK-----------TRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQK 85 (242)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEEECCeecCCCCHHHHHhcCeeEeccc
Confidence 34678899999999999999999999999999999 589999999998754321 1 1122222
Q ss_pred -CCCcceeeeeeccccccccc-------------CccccchHHHHHHHHH--------------HHHHHHhhc-CCCcee
Q 018809 85 -AVPAFLEIHDIAGLVRGAHE-------------GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDII 135 (350)
Q Consensus 85 -~~~~~l~~~D~~g~~~~~~~-------------~~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl 135 (350)
..+..+++.|+..+...... .......+++.++..+ .-+.+++++ .+|+++
T Consensus 86 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~l 165 (242)
T TIGR03411 86 PTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLL 165 (242)
T ss_pred cccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 22223444444332110000 0000001111111000 115677887 899999
Q ss_pred eecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 136 ~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++| ||++++|......+...+..+.+ ...+... +|+...+..+|+++ .+|.+|+.+..++
T Consensus 166 llD---EPt~~LD~~~~~~l~~~l~~~~~-----~~tii~~-sH~~~~~~~~~d~i-~~l~~g~~~~~~~ 225 (242)
T TIGR03411 166 LLD---EPVAGMTDEETEKTAELLKSLAG-----KHSVVVV-EHDMEFVRSIADKV-TVLHQGSVLAEGS 225 (242)
T ss_pred Eec---CCccCCCHHHHHHHHHHHHHHhc-----CCEEEEE-ECCHHHHHHhCCEE-EEEECCeEEeeCC
Confidence 999 99999999987666555443321 1122122 49999999999999 8889998876554
No 105
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.59 E-value=6.4e-16 Score=139.89 Aligned_cols=171 Identities=19% Similarity=0.204 Sum_probs=109.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCcccc-----CCcceEEEeCCcchhHHH-------h--
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTI-----EPNEARVNIPDERFEWLC-------Q-- 78 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~-----~p~~G~i~~~~~~l~~l~-------~-- 78 (350)
.=.+++.++.+|++++|+|+||||||||+++|+|. . +|.+|.|.++|.++.... .
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 83 (227)
T cd03260 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRL-----------NDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRV 83 (227)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh-----------cccccCCCCCeEEEECCEEhhhcchHHHHHHhhE
Confidence 34678899999999999999999999999999999 5 789999999997653211 1
Q ss_pred hccCCC-CCCcceeeeeeccccccccc--C----ccccchHHHHHHH-----H-----------HHHHHHHhhc-CCCce
Q 018809 79 LFKPKS-AVPAFLEIHDIAGLVRGAHE--G----QGLGNSFLSHIRA-----V-----------DGIFHVLRAF-EDPDI 134 (350)
Q Consensus 79 ~~~~~~-~~~~~l~~~D~~g~~~~~~~--~----~~~~~~~l~~l~~-----~-----------d~~l~vv~a~-~~~~v 134 (350)
.|.++. ... .+++.|+..+...... . ......+++.+.. . ..-+.+++++ .+|++
T Consensus 84 ~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 162 (227)
T cd03260 84 GMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEV 162 (227)
T ss_pred EEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 122332 122 3455554433211000 0 0000111111100 0 0125567777 89999
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 135 l~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+++| ||++++|......+...+..+.+ . ..+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 163 lllD---EPt~~LD~~~~~~l~~~l~~~~~---~--~tii~~-sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 223 (227)
T cd03260 163 LLLD---EPTSALDPISTAKIEELIAELKK---E--YTIVIV-THNMQQAARVADRT-AFLLNGRLVEFGP 223 (227)
T ss_pred EEEe---CCCccCCHHHHHHHHHHHHHHhh---C--cEEEEE-eccHHHHHHhCCEE-EEEeCCEEEEecC
Confidence 9999 99999999988666665443322 1 222223 49999999999999 8889998775544
No 106
>PRK10908 cell division protein FtsE; Provisional
Probab=99.59 E-value=2.3e-16 Score=142.36 Aligned_cols=168 Identities=15% Similarity=0.145 Sum_probs=105.6
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--------Hh--hccCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQ--LFKPK 83 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------~~--~~~~~ 83 (350)
-.++++.+.+|++++|+|+||||||||+++|+|. .+|++|.|.++|.++..+ .. .|.++
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q 86 (222)
T PRK10908 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI-----------ERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQ 86 (222)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEcccCChhHHHHHHhheEEEec
Confidence 4678899999999999999999999999999999 589999999998754321 11 12232
Q ss_pred C-CCCcceeeeeeccccccccc-C-cc---ccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCC
Q 018809 84 S-AVPAFLEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (350)
Q Consensus 84 ~-~~~~~l~~~D~~g~~~~~~~-~-~~---~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~e 142 (350)
. .....+++.|...+...... . .. ....+++.+...+ .-+.+++++ .+|+++++| |
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---E 163 (222)
T PRK10908 87 DHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLAD---E 163 (222)
T ss_pred CccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEe---C
Confidence 2 22223444444332210000 0 00 0011111111111 115677887 899999999 9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc
Q 018809 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (350)
Q Consensus 143 P~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~ 201 (350)
|++++|....+.+...+..+.+ ....+.. .+|+...+..+|+++ .+|++|+++
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~----~~~tiii-~sH~~~~~~~~~d~i-~~l~~G~i~ 216 (222)
T PRK10908 164 PTGNLDDALSEGILRLFEEFNR----VGVTVLM-ATHDIGLISRRSYRM-LTLSDGHLH 216 (222)
T ss_pred CCCcCCHHHHHHHHHHHHHHHH----CCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEc
Confidence 9999999887666555443311 0111112 249999999999998 788888765
No 107
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.59 E-value=6.2e-16 Score=135.16 Aligned_cols=153 Identities=23% Similarity=0.373 Sum_probs=99.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~~ 85 (350)
.-.++++++.+|++++|+|+||||||||+++|+|. .+|+.|.|.++|.++... .. .|.++
T Consensus 14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~-----------~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q-- 80 (180)
T cd03214 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL-----------LKPSSGEILLDGKDLASLSPKELARKIAYVPQ-- 80 (180)
T ss_pred eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCcCCHHHHHHHHhHHHH--
Confidence 34678899999999999999999999999999999 589999999998654211 00 01111
Q ss_pred CCcceeeeeecccccccc---cCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHH
Q 018809 86 VPAFLEIHDIAGLVRGAH---EGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEF 161 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~---~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~ 161 (350)
+.+..++..... ...+.|++ +++ .+++++ .+|+++++| ||++++|....+.+...+..
T Consensus 81 ------~l~~~gl~~~~~~~~~~LS~G~~--qrl-------~laral~~~p~llllD---EP~~~LD~~~~~~~~~~l~~ 142 (180)
T cd03214 81 ------ALELLGLAHLADRPFNELSGGER--QRV-------LLARALAQEPPILLLD---EPTSHLDIAHQIELLELLRR 142 (180)
T ss_pred ------HHHHcCCHhHhcCCcccCCHHHH--HHH-------HHHHHHhcCCCEEEEe---CCccCCCHHHHHHHHHHHHH
Confidence 222223321111 11112222 333 345555 699999999 99999999887666555443
Q ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc
Q 018809 162 MERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (350)
Q Consensus 162 l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~ 201 (350)
+.+. ....+... +|+...+.++||++ .+|.+|++.
T Consensus 143 ~~~~---~~~tiii~-sh~~~~~~~~~d~~-~~l~~g~i~ 177 (180)
T cd03214 143 LARE---RGKTVVMV-LHDLNLAARYADRV-ILLKDGRIV 177 (180)
T ss_pred HHHh---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEE
Confidence 3211 01122122 49999989999999 778888654
No 108
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=4e-16 Score=139.64 Aligned_cols=167 Identities=19% Similarity=0.235 Sum_probs=105.0
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH----Hh--hccCCC-CC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQ--LFKPKS-AV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l----~~--~~~~~~-~~ 86 (350)
-.+++.++.+| +++|+|+||||||||+++|+|. .+|++|.|.++|.++... .. .|.++. ..
T Consensus 16 l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~ 83 (211)
T cd03264 16 LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATL-----------TPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGV 83 (211)
T ss_pred EcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCCccccchHHHHhheEEecCCCcc
Confidence 46788899999 9999999999999999999999 689999999998764321 11 122222 22
Q ss_pred Ccceeeeeecccccccc---cC--ccccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCch
Q 018809 87 PAFLEIHDIAGLVRGAH---EG--QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRD 146 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~---~~--~~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~~ 146 (350)
...+++.|+..+..... .. ......+++.+...+. -+.+++++ .+|+++++| ||+++
T Consensus 84 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~ 160 (211)
T cd03264 84 YPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVD---EPTAG 160 (211)
T ss_pred cccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCccc
Confidence 22344445443311000 00 0000111111111111 15677887 899999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccc
Q 018809 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (350)
Q Consensus 147 ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~ 202 (350)
+|....+.+...+..+.+ ...+... +|+...+..+++++ .+|++|+++.
T Consensus 161 LD~~~~~~l~~~l~~~~~-----~~tii~v-sH~~~~~~~~~d~i-~~l~~g~i~~ 209 (211)
T cd03264 161 LDPEERIRFRNLLSELGE-----DRIVILS-THIVEDVESLCNQV-AVLNKGKLVF 209 (211)
T ss_pred CCHHHHHHHHHHHHHHhC-----CCEEEEE-cCCHHHHHHhCCEE-EEEECCEEEe
Confidence 999987666555433321 1112122 49999999999998 7888887653
No 109
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2.4e-16 Score=146.13 Aligned_cols=173 Identities=15% Similarity=0.238 Sum_probs=108.7
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCC-C
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKS-A 85 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~-~ 85 (350)
=.++++++++|+++||+|+||||||||+++|+|. .+|++|.|.++|.++... .. .|.++. .
T Consensus 27 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 95 (265)
T PRK10575 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH-----------QPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLP 95 (265)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCCEEEECCEehhhCCHHHHhhheEEeccCCC
Confidence 3678899999999999999999999999999999 589999999998765321 11 122222 2
Q ss_pred CCcceeeeeecccccccccC------c---cccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCC
Q 018809 86 VPAFLEIHDIAGLVRGAHEG------Q---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~------~---~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~ 141 (350)
....+++.|+..+....... . ......+..+...+. -+.+++++ .+|+++++|
T Consensus 96 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD--- 172 (265)
T PRK10575 96 AAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD--- 172 (265)
T ss_pred CCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc---
Confidence 22233444443322100000 0 000111111111111 15577777 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+.+. ....+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 173 EPt~~LD~~~~~~~~~~l~~l~~~---~~~tiii~-sH~~~~i~~~~d~i-~~l~~G~i~~~~~ 231 (265)
T PRK10575 173 EPTSALDIAHQVDVLALVHRLSQE---RGLTVIAV-LHDINMAARYCDYL-VALRGGEMIAQGT 231 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHh---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCeEEEecC
Confidence 999999999976665554433211 11112122 49999999999999 7889998875543
No 110
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=1.4e-16 Score=155.16 Aligned_cols=173 Identities=18% Similarity=0.248 Sum_probs=111.2
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH----------h-hccC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----------Q-LFKP 82 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~----------~-~~~~ 82 (350)
-.+++.++++|++++|+|+||||||||+++|+|+ .+|.+|.|.++|.++..+. . .|.+
T Consensus 44 L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl-----------~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~ 112 (400)
T PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL-----------IEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVF 112 (400)
T ss_pred EEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC-----------CCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEE
Confidence 4788999999999999999999999999999999 6899999999987643210 1 1222
Q ss_pred CC-CCCcceeeeeeccccccccc--Cc---cccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCC
Q 018809 83 KS-AVPAFLEIHDIAGLVRGAHE--GQ---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 83 ~~-~~~~~l~~~D~~g~~~~~~~--~~---~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
+. ..+..+++.|+..+...... .. .....+++.+...+ .-+.+++++ .+|+++++|
T Consensus 113 Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLD--- 189 (400)
T PRK10070 113 QSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMD--- 189 (400)
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEE---
Confidence 22 22334455555443211000 00 00001111111000 015677777 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|....+.+...+..+.+. ..+.+... +|+..++..+||++ .+|.+|+++..++
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~---~g~TIIiv-THd~~~~~~~~Dri-~vL~~G~i~~~g~ 248 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAK---HQRTIVFI-SHDLDEAMRIGDRI-AIMQNGEVVQVGT 248 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHH---CCCeEEEE-ECCHHHHHHhCCEE-EEEECCEEEecCC
Confidence 999999999876666554433211 11222222 49999999999999 8999998876543
No 111
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=2e-16 Score=148.37 Aligned_cols=175 Identities=15% Similarity=0.164 Sum_probs=111.0
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKP 82 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~ 82 (350)
+.-..+++.+.+|+++||+|+||||||||+++|+|. .+|++|.|.++|.++.. +.. .|.+
T Consensus 21 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~ 89 (287)
T PRK13637 21 KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL-----------LKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVF 89 (287)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCccEEEECCEECCCcCccHHHHhhceEEEe
Confidence 355788999999999999999999999999999999 68999999999976532 111 1222
Q ss_pred CCC--CCcceeeeeeccccccccc--CccccchHHHHHHHHH-------------------HHHHHHhhc-CCCceeeec
Q 018809 83 KSA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVD-------------------GIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 83 ~~~--~~~~l~~~D~~g~~~~~~~--~~~~~~~~l~~l~~~d-------------------~~l~vv~a~-~~~~vl~ld 138 (350)
+.. .....++.|...+...... .........+.+..++ .-+.+++++ .+|+++++|
T Consensus 90 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllD 169 (287)
T PRK13637 90 QYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILD 169 (287)
T ss_pred cCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 221 1112345554433211000 0000001111111111 015567777 799999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+.+. ....+.. .+|++..+..+||++ .+|.+|+++..++
T Consensus 170 ---EPt~gLD~~~~~~l~~~l~~l~~~---~g~tvi~-vtHd~~~~~~~~drv-~~l~~G~i~~~g~ 228 (287)
T PRK13637 170 ---EPTAGLDPKGRDEILNKIKELHKE---YNMTIIL-VSHSMEDVAKLADRI-IVMNKGKCELQGT 228 (287)
T ss_pred ---CCccCCCHHHHHHHHHHHHHHHHh---cCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 999999999876665554433221 1112212 249999999999999 8899999876654
No 112
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.59 E-value=7.3e-16 Score=138.18 Aligned_cols=166 Identities=17% Similarity=0.237 Sum_probs=102.3
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh--hccCCC-CCC--
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--LFKPKS-AVP-- 87 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~--~~~~~~-~~~-- 87 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|++|.|.++|.++..... .|.++. ..+
T Consensus 14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~ 82 (213)
T cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL-----------LKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRD 82 (213)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCCEEEECCccHHHHHhheEEeccccccccC
Confidence 34678899999999999999999999999999999 58999999999976532211 122222 111
Q ss_pred cceeeeeeccccccccc---------CccccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCC
Q 018809 88 AFLEIHDIAGLVRGAHE---------GQGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDP 143 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~~---------~~~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP 143 (350)
...++.|+..+...... .......+++.+...+. -+.+++++ .+|+++++| ||
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD---EP 159 (213)
T cd03235 83 FPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLD---EP 159 (213)
T ss_pred CCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CC
Confidence 11344444322111000 00001111111111111 15677777 899999999 99
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcC
Q 018809 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (350)
Q Consensus 144 ~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g 198 (350)
++++|......+...+..+.+ ....+... +|+...+..+|+++ ..|.+|
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~----~~~tvi~~-sH~~~~~~~~~d~i-~~l~~~ 208 (213)
T cd03235 160 FAGVDPKTQEDIYELLRELRR----EGMTILVV-THDLGLVLEYFDRV-LLLNRT 208 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHh----cCCEEEEE-eCCHHHHHHhcCEE-EEEcCc
Confidence 999999987655554433211 11122122 49999999999998 666654
No 113
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.59 E-value=2.5e-16 Score=143.50 Aligned_cols=172 Identities=16% Similarity=0.198 Sum_probs=106.3
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh-hccCCC-CC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ-LFKPKS-AV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~-~~~~~~-~~ 86 (350)
-.++++++.+|+++||+|+||||||||+++|+|. .+|++|.|.++|..+... .. .|.++. ..
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~ 85 (236)
T TIGR03864 17 LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL-----------YVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTL 85 (236)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCEEcccCChhhhhhEEEeCCCCCC
Confidence 3678899999999999999999999999999999 589999999998754321 11 122222 22
Q ss_pred Ccceeeeeeccccccccc-C----ccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCch
Q 018809 87 PAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~-~----~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ 146 (350)
+...++.+...+...... . ......+++.+...+ .-+.+++++ .+|+++++| ||+++
T Consensus 86 ~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EP~~~ 162 (236)
T TIGR03864 86 DLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLD---EPTVG 162 (236)
T ss_pred cccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCccC
Confidence 223445544432211000 0 000011111111111 015677777 899999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 147 ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+|....+.+...+..+.+. ....+... +|+...+.. |+++ ..|.+|+++..++
T Consensus 163 LD~~~~~~l~~~l~~~~~~---~~~tiii~-sH~~~~~~~-~d~i-~~l~~G~i~~~~~ 215 (236)
T TIGR03864 163 LDPASRAAIVAHVRALCRD---QGLSVLWA-THLVDEIEA-DDRL-VVLHRGRVLADGA 215 (236)
T ss_pred CCHHHHHHHHHHHHHHHHh---CCCEEEEE-ecChhhHhh-CCEE-EEEeCCeEEEeCC
Confidence 9999976665554332211 11112122 499988865 9998 8888998765543
No 114
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.58 E-value=2.5e-16 Score=144.86 Aligned_cols=174 Identities=17% Similarity=0.199 Sum_probs=107.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH----------------
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------------- 76 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l---------------- 76 (350)
.-.++++.+.+|++++|+|+||||||||+++|+|. ..|.+|.|.++|..+..+
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~ 83 (252)
T TIGR03005 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL-----------EPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLR 83 (252)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccccccccccccchhHHH
Confidence 34678899999999999999999999999999999 589999999998755311
Q ss_pred --Hh--hccCCC-CCCcceeeeeecccccccccC---ccc---cchHHHHHHHHH--------------HHHHHHhhc-C
Q 018809 77 --CQ--LFKPKS-AVPAFLEIHDIAGLVRGAHEG---QGL---GNSFLSHIRAVD--------------GIFHVLRAF-E 130 (350)
Q Consensus 77 --~~--~~~~~~-~~~~~l~~~D~~g~~~~~~~~---~~~---~~~~l~~l~~~d--------------~~l~vv~a~-~ 130 (350)
.. .|.++. ......++.|+..+......+ ... ...+++.+...+ ..+.+++++ .
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 163 (252)
T TIGR03005 84 QMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAM 163 (252)
T ss_pred HHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHc
Confidence 11 122221 222234444444321100000 000 011111111111 115677777 8
Q ss_pred CCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 131 DPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 131 ~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+|+++++| ||++++|......+...+..+.+. ....+... +|+...+..+++++ .+|++|+++..++
T Consensus 164 ~p~llllD---EP~~~LD~~~~~~l~~~l~~~~~~---~~~tiiiv-sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 230 (252)
T TIGR03005 164 RPKVMLFD---EVTSALDPELVGEVLNVIRRLASE---HDLTMLLV-THEMGFAREFADRV-CFFDKGRIVEQGK 230 (252)
T ss_pred CCCEEEEe---CCcccCCHHHHHHHHHHHHHHHHh---cCcEEEEE-eCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 99999999 999999998876555544332211 11111122 49999999999999 8899998875543
No 115
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=2e-16 Score=148.00 Aligned_cols=176 Identities=15% Similarity=0.196 Sum_probs=111.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchh-------HHHh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-------WLCQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~-------~l~~--~~~~~ 83 (350)
.-..++..+.+|+++||+|+||||||||+++|+|. .+|.+|.|.++|.++. .+.. .|.++
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl-----------~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q 89 (283)
T PRK13636 21 ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI-----------LKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQ 89 (283)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCccEEEECCEECCCCcchHHHHHhhEEEEec
Confidence 44678899999999999999999999999999999 6899999999997652 1111 23233
Q ss_pred CC--CCcceeeeeeccccccccc--CccccchHHHHHHHHHH-----------------HHHHHhhc-CCCceeeecCCC
Q 018809 84 SA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDG-----------------IFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 84 ~~--~~~~l~~~D~~g~~~~~~~--~~~~~~~~l~~l~~~d~-----------------~l~vv~a~-~~~~vl~ld~~~ 141 (350)
.. .....++.|...+...... ...........+...++ -+.+++++ .+|+++++|
T Consensus 90 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilD--- 166 (283)
T PRK13636 90 DPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLD--- 166 (283)
T ss_pred CcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---
Confidence 21 1122345554433211000 00000011111111111 15577777 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
||++++|......+...+..+.+. ....+... +|+...+..+|+++ .+|.+|+++..++.+
T Consensus 167 EPt~gLD~~~~~~l~~~l~~l~~~---~g~tillv-sH~~~~~~~~~dri-~~l~~G~i~~~g~~~ 227 (283)
T PRK13636 167 EPTAGLDPMGVSEIMKLLVEMQKE---LGLTIIIA-THDIDIVPLYCDNV-FVMKEGRVILQGNPK 227 (283)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHh---CCCEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEeCCHH
Confidence 999999999876665554433221 11122122 49999999999999 889999988766543
No 116
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=6.5e-16 Score=142.42 Aligned_cols=173 Identities=14% Similarity=0.238 Sum_probs=109.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCC-
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKS- 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~- 84 (350)
.=.++++.+.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|..+... .. .|.++.
T Consensus 17 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (255)
T PRK11231 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL-----------LTPQSGTVFLGDKPISMLSSRQLARRLALLPQHH 85 (255)
T ss_pred EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------cCCCCcEEEECCEEhHHCCHHHHhhheEEecccC
Confidence 33678889999999999999999999999999999 578999999998765321 11 122222
Q ss_pred CCCcceeeeeecccccccc---cC---ccccchHHHHHHHHHH-----------------HHHHHhhc-CCCceeeecCC
Q 018809 85 AVPAFLEIHDIAGLVRGAH---EG---QGLGNSFLSHIRAVDG-----------------IFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~---~~---~~~~~~~l~~l~~~d~-----------------~l~vv~a~-~~~~vl~ld~~ 140 (350)
.....+++.|+..+..... .+ .....++...+...++ -+.+++++ .+|+++++|
T Consensus 86 ~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD-- 163 (255)
T PRK11231 86 LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLD-- 163 (255)
T ss_pred CCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc--
Confidence 2222344545433221000 00 0000011111111110 15577777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+ ....+... +|+...+.++|+++ .+|.+|++...++
T Consensus 164 -EP~~~LD~~~~~~l~~~l~~l~~----~~~tiii~-tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 221 (255)
T PRK11231 164 -EPTTYLDINHQVELMRLMRELNT----QGKTVVTV-LHDLNQASRYCDHL-VVLANGHVMAQGT 221 (255)
T ss_pred -CCcccCCHHHHHHHHHHHHHHHH----CCCEEEEE-ECCHHHHHHhcCEE-EEEECCeEEEEcC
Confidence 99999999887665555433211 11122122 49999999999999 8899998875544
No 117
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.58 E-value=3.8e-16 Score=144.27 Aligned_cols=174 Identities=16% Similarity=0.254 Sum_probs=109.7
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh--hccCCC-
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKS- 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~--~~~~~~- 84 (350)
.=.++++++.+|++++|+|+||||||||+++|+|. .+|++|.|.++|..+.. ... .|.++.
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (258)
T PRK13548 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE-----------LSPDSGEVRLNGRPLADWSPAELARRRAVLPQHS 85 (258)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEEcccCCHHHhhhheEEEccCC
Confidence 34678899999999999999999999999999999 58999999999875422 111 122222
Q ss_pred CCCcceeeeeecccccccccC-----ccccchHHHHHHHHHH--------------HHHHHhhcC-------CCceeeec
Q 018809 85 AVPAFLEIHDIAGLVRGAHEG-----QGLGNSFLSHIRAVDG--------------IFHVLRAFE-------DPDIIHVD 138 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~-----~~~~~~~l~~l~~~d~--------------~l~vv~a~~-------~~~vl~ld 138 (350)
..+..+++.|+..+....... ......+++.+...+. -+.+++++. +|+++++|
T Consensus 86 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLD 165 (258)
T PRK13548 86 SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLD 165 (258)
T ss_pred cCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEe
Confidence 222234555554332111000 0001111111111111 155777774 89999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+ +....+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 166 ---EPt~~LD~~~~~~l~~~l~~~~~---~~~~tiii~-sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 224 (258)
T PRK13548 166 ---EPTSALDLAHQHHVLRLARQLAH---ERGLAVIVV-LHDLNLAARYADRI-VLLHQGRLVADGT 224 (258)
T ss_pred ---CCcccCCHHHHHHHHHHHHHHHH---hcCCEEEEE-ECCHHHHHHhcCEE-EEEECCEEEeeCC
Confidence 99999999987666555443321 111122122 49999999999999 8889998875544
No 118
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=6.2e-16 Score=142.44 Aligned_cols=174 Identities=14% Similarity=0.224 Sum_probs=110.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH------H--hhccCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKS 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l------~--~~~~~~~ 84 (350)
.-.+++..+.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|..+... . -.|.++.
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~ 88 (255)
T PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF-----------YKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQH 88 (255)
T ss_pred EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------cCCCcceEEECCEECCCCCHHHHHhcCeEEeccC
Confidence 34678889999999999999999999999999999 689999999998754211 1 1122222
Q ss_pred -CCCcceeeeeeccccccc----------------ccC-c---cccchHHHHHHHHHH--------------HHHHHhhc
Q 018809 85 -AVPAFLEIHDIAGLVRGA----------------HEG-Q---GLGNSFLSHIRAVDG--------------IFHVLRAF 129 (350)
Q Consensus 85 -~~~~~l~~~D~~g~~~~~----------------~~~-~---~~~~~~l~~l~~~d~--------------~l~vv~a~ 129 (350)
..+..+++.|+..+.... ... . .....+++.+...+. -+.+++++
T Consensus 89 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al 168 (255)
T PRK11300 89 VRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCM 168 (255)
T ss_pred cccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHH
Confidence 222334555543321100 000 0 000111111111111 15677787
Q ss_pred -CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 130 -EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 130 -~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
.+|+++++| ||++++|......+...+..+.+. ....+... +|+...+..+|+++ ..|.+|+++..++
T Consensus 169 ~~~p~llllD---EPt~~LD~~~~~~l~~~L~~~~~~---~~~tii~~-sH~~~~~~~~~d~i-~~l~~g~i~~~~~ 237 (255)
T PRK11300 169 VTQPEILMLD---EPAAGLNPKETKELDELIAELRNE---HNVTVLLI-EHDMKLVMGISDRI-YVVNQGTPLANGT 237 (255)
T ss_pred hcCCCEEEEc---CCccCCCHHHHHHHHHHHHHHHhh---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCeEEecCC
Confidence 899999999 999999999876665554433211 11122122 49999999999999 8889998876554
No 119
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=3.2e-16 Score=142.43 Aligned_cols=172 Identities=14% Similarity=0.167 Sum_probs=107.8
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----hhccCCC-CCCc
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AVPA 88 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~~~~~~~-~~~~ 88 (350)
.+++..+.+|+++||+|+||||||||+++|+|. .+|++|.|.++|+++.... -.|.++. ....
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~ 84 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGF-----------LTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFS 84 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCeecCcCChhhccEEEEeccccccc
Confidence 378999999999999999999999999999999 5899999999987643211 1122222 2222
Q ss_pred ceeeeeecccccccc-c-C---ccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCchhH
Q 018809 89 FLEIHDIAGLVRGAH-E-G---QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (350)
Q Consensus 89 ~l~~~D~~g~~~~~~-~-~---~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (350)
.+++.|+..+..... . . ......+++.+.... .-+.+++++ .+|+++++| ||++++|
T Consensus 85 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EP~~gLD 161 (232)
T PRK10771 85 HLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLD---EPFSALD 161 (232)
T ss_pred CCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCC
Confidence 344444433221000 0 0 000111111111111 115577777 899999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 149 ~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
......+...+..+.+ .....+... +|+...+..+|+++ ..|.+|++...++
T Consensus 162 ~~~~~~~~~~l~~~~~---~~~~tiii~-sH~~~~~~~~~d~i-~~l~~g~i~~~g~ 213 (232)
T PRK10771 162 PALRQEMLTLVSQVCQ---ERQLTLLMV-SHSLEDAARIAPRS-LVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHHHHHHH---hcCCEEEEE-ECCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9987655554433211 111122122 49999999999999 8888898875554
No 120
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.58 E-value=1.5e-16 Score=154.03 Aligned_cols=173 Identities=16% Similarity=0.197 Sum_probs=111.2
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCc----chhH-----HH-----h-
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE----RFEW-----LC-----Q- 78 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~----~l~~-----l~-----~- 78 (350)
-.+++.++++|++++|+|+||||||||+++|+|. .+|++|.|.++|+ ++.. +. .
T Consensus 40 l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl-----------~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 40 VANASLDIEEGEICVLMGLSGSGKSSLLRAVNGL-----------NPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEECCEecccccccCCHHHHHHHhcCCE
Confidence 3788999999999999999999999999999999 6899999999984 2211 11 0
Q ss_pred hccCC-CCCCcceeeeeeccccccccc-C-cc---ccchHHHHHHHHH--------------HHHHHHhhc-CCCceeee
Q 018809 79 LFKPK-SAVPAFLEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 79 ~~~~~-~~~~~~l~~~D~~g~~~~~~~-~-~~---~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~l 137 (350)
.|.++ ......+++.|+..+...... . .. ....+++.+...+ .-+.+++++ .+|+++++
T Consensus 109 ~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLl 188 (382)
T TIGR03415 109 SMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLM 188 (382)
T ss_pred EEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11122 222334566666554321000 0 00 0011111111100 115677888 89999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++.+|......+...+..+.+. ...++... +|++.++..+||++ .+|.+|+++..++
T Consensus 189 D---EPts~LD~~~r~~l~~~L~~l~~~---~~~TII~i-THdl~e~~~l~DrI-~vl~~G~iv~~g~ 248 (382)
T TIGR03415 189 D---EPFSALDPLIRTQLQDELLELQAK---LNKTIIFV-SHDLDEALKIGNRI-AIMEGGRIIQHGT 248 (382)
T ss_pred E---CCCccCCHHHHHHHHHHHHHHHHh---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 9 999999999876655554433221 11222122 49999999999999 9999999876654
No 121
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.58 E-value=2.4e-15 Score=149.12 Aligned_cols=118 Identities=34% Similarity=0.611 Sum_probs=95.8
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeee
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D 94 (350)
..+...++.--.|+|||.||||||||||+|++.+..+++|||||+.|+.|.+.+.+. .++++|
T Consensus 150 ~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~-----------------~f~laD 212 (500)
T PRK12296 150 RDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDT-----------------RFTVAD 212 (500)
T ss_pred EEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCe-----------------EEEEEE
Confidence 444555556668999999999999999999999888899999999999999988752 488999
Q ss_pred ecccccccccCccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHH
Q 018809 95 IAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELR 155 (350)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~ 155 (350)
+||++.+++.+.+++..++++++.+|++++|+|+... +...+|..+++.+..++.
T Consensus 213 tPGliegas~g~gLg~~fLrhieradvLv~VVD~s~~------e~~rdp~~d~~~i~~EL~ 267 (500)
T PRK12296 213 VPGLIPGASEGKGLGLDFLRHIERCAVLVHVVDCATL------EPGRDPLSDIDALEAELA 267 (500)
T ss_pred CCCCccccchhhHHHHHHHHHHHhcCEEEEEECCccc------ccccCchhhHHHHHHHHH
Confidence 9999988887778888999999999999999998531 112367766766665443
No 122
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=1.7e-15 Score=134.93 Aligned_cols=165 Identities=16% Similarity=0.195 Sum_probs=103.3
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC---CcceEEEeCCcchhHHHh------hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE---PNEARVNIPDERFEWLCQ------LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~---p~~G~i~~~~~~l~~l~~------~~~~~ 83 (350)
.-.++++.+.+|++++|+|+||||||||+++|+|. .+ |.+|.|.++|.++..... .|.++
T Consensus 22 il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q 90 (202)
T cd03233 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-----------TEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSE 90 (202)
T ss_pred eeeeEEEEECCCcEEEEECCCCCCHHHHHHHhccc-----------CCCCCCcceEEEECCEECccchhhhcceEEEEec
Confidence 33678889999999999999999999999999999 45 789999999876532211 12222
Q ss_pred C-CCCcceeeeeeccccccc--c-cCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHH
Q 018809 84 S-AVPAFLEIHDIAGLVRGA--H-EGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKD 158 (350)
Q Consensus 84 ~-~~~~~l~~~D~~g~~~~~--~-~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~ 158 (350)
. .....+++.|+..+.... . ....+..-..+++ .+++++ .+|+++++| ||+..+|......+...
T Consensus 91 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl-------~laral~~~p~llllD---EPt~~LD~~~~~~~~~~ 160 (202)
T cd03233 91 EDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRV-------SIAEALVSRASVLCWD---NSTRGLDSSTALEILKC 160 (202)
T ss_pred ccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHH-------HHHHHHhhCCCEEEEc---CCCccCCHHHHHHHHHH
Confidence 2 222234555544332111 0 0001111111333 444554 599999999 99999999987666665
Q ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccc
Q 018809 159 IEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (350)
Q Consensus 159 l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~ 202 (350)
+..+.+. ....+.....|....+.++|+++ .+|.+|+++.
T Consensus 161 l~~~~~~---~~~t~ii~~~h~~~~~~~~~d~i-~~l~~G~i~~ 200 (202)
T cd03233 161 IRTMADV---LKTTTFVSLYQASDEIYDLFDKV-LVLYEGRQIY 200 (202)
T ss_pred HHHHHHh---CCCEEEEEEcCCHHHHHHhCCeE-EEEECCEEEe
Confidence 4433221 01111122236677888999999 8888887653
No 123
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.5e-15 Score=138.84 Aligned_cols=172 Identities=17% Similarity=0.262 Sum_probs=108.6
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH------HHh--hccCCC-
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LCQ--LFKPKS- 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~------l~~--~~~~~~- 84 (350)
-.+++..+++|++++|+|+||||||||+++|+|. .+|.+|.|.++|..+.. ... .|.++.
T Consensus 19 l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~ 87 (241)
T PRK10895 19 VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI-----------VPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEA 87 (241)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCC
Confidence 3678899999999999999999999999999999 58999999999865421 111 233332
Q ss_pred CCCcceeeeeeccccccccc---C---ccccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCC
Q 018809 85 AVPAFLEIHDIAGLVRGAHE---G---QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDP 143 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~---~---~~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP 143 (350)
.....+++.|+..+...... . ......+++.+...+. -+.+++++ .+|+++++| ||
T Consensus 88 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP 164 (241)
T PRK10895 88 SIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD---EP 164 (241)
T ss_pred cccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CC
Confidence 22223455554433211000 0 0001111111111111 15577777 899999999 99
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 144 ~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++++|....+.+...+..+.+ ....+... +|+...+..+||++ ..|.+|++...++
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~----~g~tiii~-sH~~~~~~~~~d~v-~~l~~G~i~~~~~ 220 (241)
T PRK10895 165 FAGVDPISVIDIKRIIEHLRD----SGLGVLIT-DHNVRETLAVCERA-YIVSQGHLIAHGT 220 (241)
T ss_pred cccCCHHHHHHHHHHHHHHHh----cCCEEEEE-EcCHHHHHHhcCEE-EEEeCCeEEeeCC
Confidence 999999887665554432211 11122122 49999999999999 8889998876544
No 124
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.58 E-value=3.3e-16 Score=141.11 Aligned_cols=169 Identities=17% Similarity=0.208 Sum_probs=103.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--------H-h--hcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C-Q--LFK 81 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------~-~--~~~ 81 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++... . . .|.
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v 88 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL-----------DNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFI 88 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEE
Confidence 34678899999999999999999999999999999 689999999998765321 1 1 122
Q ss_pred CCC-CCCcceeeeeecccccccc-cC----ccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCC
Q 018809 82 PKS-AVPAFLEIHDIAGLVRGAH-EG----QGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 82 ~~~-~~~~~l~~~D~~g~~~~~~-~~----~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~ 140 (350)
++. ..+..+++.|+..+..... .. ......+++.+...+ .-+.+++++ .+|+++++|
T Consensus 89 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD-- 166 (221)
T TIGR02211 89 YQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLAD-- 166 (221)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEe--
Confidence 222 2222345555543321000 00 000011111111101 115577777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~ 201 (350)
||++++|....+.+...+..+.+. ....+... +|+...+.. +|++ ..|.+|+++
T Consensus 167 -EPt~~LD~~~~~~l~~~l~~~~~~---~~~tii~~-tH~~~~~~~-~d~v-~~l~~G~i~ 220 (221)
T TIGR02211 167 -EPTGNLDNNNAKIIFDLMLELNRE---LNTSFLVV-THDLELAKK-LDRV-LEMKDGQLF 220 (221)
T ss_pred -CCCCcCCHHHHHHHHHHHHHHHHh---cCCEEEEE-eCCHHHHhh-cCEE-EEEeCCEec
Confidence 999999999876665554333211 11122122 499887754 6887 777777643
No 125
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.57 E-value=7.3e-16 Score=142.90 Aligned_cols=174 Identities=20% Similarity=0.270 Sum_probs=109.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--------Hh--hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQ--LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------~~--~~~~ 82 (350)
.-.+++..+.+|++++|+|+||||||||+++|+|. .+|++|.|.++|.++... .. .|.+
T Consensus 26 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~ 94 (265)
T TIGR02769 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL-----------EKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVF 94 (265)
T ss_pred EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEccccCHHHHHHHhhceEEEe
Confidence 44788899999999999999999999999999999 589999999998754321 11 1222
Q ss_pred CC---CCCcceeeeeecccccc----ccc--CccccchHHHHHHHH---------------HHHHHHHhhc-CCCceeee
Q 018809 83 KS---AVPAFLEIHDIAGLVRG----AHE--GQGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 83 ~~---~~~~~l~~~D~~g~~~~----~~~--~~~~~~~~l~~l~~~---------------d~~l~vv~a~-~~~~vl~l 137 (350)
+. .++..+++.|+..+... ... .......+++.+... ..-+.+++++ .+|+++++
T Consensus 95 q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illL 174 (265)
T TIGR02769 95 QDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVL 174 (265)
T ss_pred cChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22 12223444443322100 000 000011111111110 0115577777 89999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++++|....+.+...+..+.+. ....+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 175 D---EPt~~LD~~~~~~l~~~l~~~~~~---~g~tiiiv-sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 234 (265)
T TIGR02769 175 D---EAVSNLDMVLQAVILELLRKLQQA---FGTAYLFI-THDLRLVQSFCQRV-AVMDKGQIVEECD 234 (265)
T ss_pred e---CCcccCCHHHHHHHHHHHHHHHHh---cCcEEEEE-eCCHHHHHHHhcEE-EEEeCCEEEEECC
Confidence 9 999999998876665554433221 11122122 49999999999999 8889998876554
No 126
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.57 E-value=4.1e-16 Score=144.59 Aligned_cols=173 Identities=16% Similarity=0.216 Sum_probs=108.6
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----H--hhccCCC-C
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKS-A 85 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~--~~~~~~~-~ 85 (350)
=.+++..+.+|++++|+|+||||||||+++|+|. .+|+.|.|.++|+.+... . ..|.++. .
T Consensus 23 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 91 (265)
T PRK10253 23 AENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL-----------MTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNAT 91 (265)
T ss_pred eeecceEECCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCc
Confidence 3678899999999999999999999999999999 578999999998765321 1 1122222 2
Q ss_pred CCcceeeeeeccccccccc------Cc---cccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCC
Q 018809 86 VPAFLEIHDIAGLVRGAHE------GQ---GLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~------~~---~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
.+..+++.|+..+...... .. .....+++.++..+ .-+.+++++ .+|+++++|
T Consensus 92 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD--- 168 (265)
T PRK10253 92 TPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLD--- 168 (265)
T ss_pred CCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEe---
Confidence 2222344444322110000 00 00011111111111 115577777 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+. ....+... +|+...+..+||++ ..|.+|+++..++
T Consensus 169 EPt~gLD~~~~~~l~~~L~~l~~~---~~~tiii~-tH~~~~~~~~~d~i-~~l~~G~i~~~g~ 227 (265)
T PRK10253 169 EPTTWLDISHQIDLLELLSELNRE---KGYTLAAV-LHDLNQACRYASHL-IALREGKIVAQGA 227 (265)
T ss_pred CccccCCHHHHHHHHHHHHHHHHh---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999999876665554333211 11112122 49999999999999 8889998876554
No 127
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=5.1e-16 Score=141.97 Aligned_cols=173 Identities=17% Similarity=0.203 Sum_probs=106.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~~ 85 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++... .. .|.++..
T Consensus 18 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~ 86 (241)
T PRK14250 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL-----------IDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQP 86 (241)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEhhhcChHHhhhcEEEEecCc
Confidence 34678899999999999999999999999999999 589999999998765321 11 1222221
Q ss_pred CCcceeeeeeccccccccc-CccccchHHHHHHHH-H--------------HHHHHHhhc-CCCceeeecCCCCCCchhH
Q 018809 86 VPAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAV-D--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~-~~~~~~~~l~~l~~~-d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (350)
.....++.++..+...... .......+++.+... + .-+.+++++ .+|+++++| ||++++|
T Consensus 87 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD 163 (241)
T PRK14250 87 HLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLD---EPTSALD 163 (241)
T ss_pred hhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCC
Confidence 1111233333222110000 000001111111110 0 115577777 899999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 149 ~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
....+.+...+..+.+. ....+... +|+...+..+||++ ..|.+|+++..+
T Consensus 164 ~~~~~~l~~~l~~~~~~---~g~tii~~-sH~~~~~~~~~d~i-~~l~~G~i~~~~ 214 (241)
T PRK14250 164 PTSTEIIEELIVKLKNK---MNLTVIWI-THNMEQAKRIGDYT-AFLNKGILVEYA 214 (241)
T ss_pred HHHHHHHHHHHHHHHHh---CCCEEEEE-eccHHHHHHhCCEE-EEEeCCEEEEeC
Confidence 98876655554332211 11122122 49999999999999 888999876544
No 128
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=3.1e-16 Score=146.16 Aligned_cols=174 Identities=18% Similarity=0.207 Sum_probs=110.4
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh--hccCCC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKS 84 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~--~~~~~~ 84 (350)
+.-.+++..+.+|+++||+|+||||||||+++|+|. .+|++|.|.++|.++.. +.. .|.++.
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 87 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI-----------YLPQRGRVKVMGREVNAENEKWVRSKVGLVFQD 87 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCceEEEECCEECCCCCHHHHHhhEEEEecC
Confidence 345788899999999999999999999999999999 68999999999976532 111 122222
Q ss_pred C--CCcceeeeeeccccccccc-Cc-c---ccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCC
Q 018809 85 A--VPAFLEIHDIAGLVRGAHE-GQ-G---LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVD 142 (350)
Q Consensus 85 ~--~~~~l~~~D~~g~~~~~~~-~~-~---~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~e 142 (350)
. .....++.+...+...... .. . ....+++.+...+. -+.+++|+ .+|+++++| |
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD---E 164 (274)
T PRK13647 88 PDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLD---E 164 (274)
T ss_pred hhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---C
Confidence 1 1112345554433211000 00 0 00111111111111 15677887 899999999 9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 143 P~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|++.+|......+...+..+.+ . ...+... +|++..+.++||++ .+|.+|+++..++
T Consensus 165 Pt~~LD~~~~~~l~~~l~~~~~---~-g~tili~-tH~~~~~~~~~d~i-~~l~~G~i~~~g~ 221 (274)
T PRK13647 165 PMAYLDPRGQETLMEILDRLHN---Q-GKTVIVA-THDVDLAAEWADQV-IVLKEGRVLAEGD 221 (274)
T ss_pred CCcCCCHHHHHHHHHHHHHHHH---C-CCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9999999987655554433211 0 1122122 49999999999999 8889999876654
No 129
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.57 E-value=1.8e-15 Score=129.68 Aligned_cols=176 Identities=17% Similarity=0.195 Sum_probs=115.4
Q ss_pred ccCcCCCCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-------
Q 018809 6 SKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ------- 78 (350)
Q Consensus 6 ~~~~~~~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~------- 78 (350)
|..+ .++-+.++.++++|+.+-|+||+|||||||+++|.+. .+|+.|.|.++|.++..+..
T Consensus 11 Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~-----------e~pt~G~i~~~~~dl~~l~~~~iP~LR 78 (223)
T COG2884 11 YPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE-----------ERPTRGKILVNGHDLSRLKGREIPFLR 78 (223)
T ss_pred cCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh-----------hcCCCceEEECCeecccccccccchhh
Confidence 4343 3467889999999999999999999999999999999 68999999999977654322
Q ss_pred -----hccCCCCCCcceeeeeeccccccccc--CccccchHHHHHHHHHHH-----------------HHHHhhc-CCCc
Q 018809 79 -----LFKPKSAVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGI-----------------FHVLRAF-EDPD 133 (350)
Q Consensus 79 -----~~~~~~~~~~~l~~~D~~g~~~~~~~--~~~~~~~~l~~l~~~d~~-----------------l~vv~a~-~~~~ 133 (350)
+||..+..+ ..+++|++.+.-.... ......+....+..+.+. +.++||+ ++|.
T Consensus 79 R~IGvVFQD~rLL~-~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 79 RQIGVVFQDFRLLP-DRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred heeeeEeeeccccc-cchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCC
Confidence 344333333 4567777665421100 011111111111111111 5577777 7999
Q ss_pred eeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcccc
Q 018809 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (350)
Q Consensus 134 vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~ 203 (350)
+++-| ||+..+|.-....++..++ .+++...++... +|+..-+...-.++ ..|++|+++++
T Consensus 158 vLlAD---EPTGNLDp~~s~~im~lfe----einr~GtTVl~A-THd~~lv~~~~~rv-l~l~~Grl~~d 218 (223)
T COG2884 158 VLLAD---EPTGNLDPDLSWEIMRLFE----EINRLGTTVLMA-THDLELVNRMRHRV-LALEDGRLVRD 218 (223)
T ss_pred eEeec---CCCCCCChHHHHHHHHHHH----HHhhcCcEEEEE-eccHHHHHhccCcE-EEEeCCEEEec
Confidence 99999 9999999877644444332 344444333222 49998887777777 77888988765
No 130
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=1.9e-16 Score=148.46 Aligned_cols=173 Identities=14% Similarity=0.144 Sum_probs=109.7
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH---------HHh--hcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LCQ--LFK 81 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~---------l~~--~~~ 81 (350)
.-.+++..+.+|++++|+|+||||||||+++|+|. .+|++|.|.++|+.+.. ... .|.
T Consensus 22 ~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v 90 (287)
T PRK13641 22 GLDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL-----------LKPSSGTITIAGYHITPETGNKNLKKLRKKVSLV 90 (287)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccchHHHHHhceEEE
Confidence 45788899999999999999999999999999999 68999999999976421 111 122
Q ss_pred CCCC--CCcceeeeeeccccccccc--Ccc---ccchHHHHHHHH-HH--------------HHHHHhhc-CCCceeeec
Q 018809 82 PKSA--VPAFLEIHDIAGLVRGAHE--GQG---LGNSFLSHIRAV-DG--------------IFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 82 ~~~~--~~~~l~~~D~~g~~~~~~~--~~~---~~~~~l~~l~~~-d~--------------~l~vv~a~-~~~~vl~ld 138 (350)
++.. ....+++.|...+...... ... ....+++.+... +. -+.+++++ .+|+++++|
T Consensus 91 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLD 170 (287)
T PRK13641 91 FQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLD 170 (287)
T ss_pred EeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 2221 1112345554432211000 000 011111111110 11 15577777 799999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+.+ ....+... +|++..+..+||++ .+|.+|+++..++
T Consensus 171 ---EPt~gLD~~~~~~l~~~l~~l~~----~g~tvliv-sH~~~~~~~~~d~v-~~l~~G~i~~~g~ 228 (287)
T PRK13641 171 ---EPAAGLDPEGRKEMMQLFKDYQK----AGHTVILV-THNMDDVAEYADDV-LVLEHGKLIKHAS 228 (287)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999887655554433211 11122122 49999999999999 8899999876654
No 131
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=3.6e-16 Score=143.01 Aligned_cols=172 Identities=17% Similarity=0.292 Sum_probs=107.9
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCC-C
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKS-A 85 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~-~ 85 (350)
-.+++.++.+|++++|+|+||||||||+++|+|. .+|++|.|.++|.++... .. .|.++. .
T Consensus 17 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~ 85 (242)
T cd03295 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL-----------IEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIG 85 (242)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCeEcCcCChHHhhcceEEEccCcc
Confidence 4678899999999999999999999999999999 588999999998754321 11 122222 2
Q ss_pred CCcceeeeeeccccccccc-C----ccccchHHHHHHHH-----H-----------HHHHHHhhc-CCCceeeecCCCCC
Q 018809 86 VPAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAV-----D-----------GIFHVLRAF-EDPDIIHVDDSVDP 143 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~-~----~~~~~~~l~~l~~~-----d-----------~~l~vv~a~-~~~~vl~ld~~~eP 143 (350)
....+++.++..+...... . ......+++.+... + .-+.+++++ .+|+++++| ||
T Consensus 86 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP 162 (242)
T cd03295 86 LFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMD---EP 162 (242)
T ss_pred ccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEec---CC
Confidence 2223455554433211000 0 00001111111111 0 015577777 899999999 99
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 144 ~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
++++|....+.+...+..+.+. ....+... +|+...+..+||++ ..|.+|+++..+
T Consensus 163 t~~LD~~~~~~l~~~L~~~~~~---~g~tvii~-sH~~~~~~~~~d~i-~~l~~G~i~~~~ 218 (242)
T cd03295 163 FGALDPITRDQLQEEFKRLQQE---LGKTIVFV-THDIDEAFRLADRI-AIMKNGEIVQVG 218 (242)
T ss_pred cccCCHHHHHHHHHHHHHHHHH---cCCEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEec
Confidence 9999998876555554332211 01112122 49999999999999 889999876544
No 132
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.57 E-value=7.3e-16 Score=142.17 Aligned_cols=173 Identities=20% Similarity=0.287 Sum_probs=110.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----H--hhccCCC-
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C--QLFKPKS- 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~--~~~~~~~- 84 (350)
.=.++++.+.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++... . ..|.++.
T Consensus 16 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 84 (256)
T TIGR03873 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA-----------LRPDAGTVDLAGVDLHGLSRRARARRVALVEQDS 84 (256)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCCCEEEECCEEcccCCHHHHhhheEEecccC
Confidence 34678899999999999999999999999999999 689999999998764321 1 1233332
Q ss_pred CCCcceeeeeecccccccc-c----C-cc---ccchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecCC
Q 018809 85 AVPAFLEIHDIAGLVRGAH-E----G-QG---LGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~-~----~-~~---~~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~~ 140 (350)
.....+++.|+..+..... . . .. ....+++.+...+.. +.+++++ .+|+++++|
T Consensus 85 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD-- 162 (256)
T TIGR03873 85 DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLD-- 162 (256)
T ss_pred ccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc--
Confidence 1222344555443321000 0 0 00 001111111111111 5577777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+.+ ....+... +|+...+.++||++ .+|.+|+++..++
T Consensus 163 -EPt~~LD~~~~~~l~~~l~~~~~----~~~tiii~-sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 220 (256)
T TIGR03873 163 -EPTNHLDVRAQLETLALVRELAA----TGVTVVAA-LHDLNLAASYCDHV-VVLDGGRVVAAGP 220 (256)
T ss_pred -CccccCCHHHHHHHHHHHHHHHh----cCCEEEEE-eCCHHHHHHhCCEE-EEEeCCCEEEecC
Confidence 99999999887655555433221 11112122 49999999999999 8899999876554
No 133
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=2e-16 Score=148.51 Aligned_cols=173 Identities=12% Similarity=0.135 Sum_probs=109.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH---------HHh--hcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LCQ--LFK 81 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~---------l~~--~~~ 81 (350)
.=.+++.++++|++++|+|+||||||||+++|+|. .+|++|.|.++|+.+.. ... .|.
T Consensus 22 ~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v 90 (290)
T PRK13634 22 ALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL-----------LQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIV 90 (290)
T ss_pred ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccchHHHHHhhEEEE
Confidence 45788999999999999999999999999999999 68999999999976521 111 122
Q ss_pred CCC---CCCcceeeeeeccccccccc--Cc---cccchHHHHHHHH-H--------------HHHHHHhhc-CCCceeee
Q 018809 82 PKS---AVPAFLEIHDIAGLVRGAHE--GQ---GLGNSFLSHIRAV-D--------------GIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 82 ~~~---~~~~~l~~~D~~g~~~~~~~--~~---~~~~~~l~~l~~~-d--------------~~l~vv~a~-~~~~vl~l 137 (350)
++. .+. ..++.+...+...... .. ......++.+... + .-+.+++++ .+|+++++
T Consensus 91 ~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llll 169 (290)
T PRK13634 91 FQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVL 169 (290)
T ss_pred eeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 222 111 2344444332211000 00 0001111111110 0 015577777 89999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++.+|......+...+..+.+. ....+... +|+...+..+||++ .+|.+|+++..++
T Consensus 170 D---EPt~~LD~~~~~~l~~~L~~l~~~---~g~tviii-tHd~~~~~~~~drv-~~l~~G~i~~~g~ 229 (290)
T PRK13634 170 D---EPTAGLDPKGRKEMMEMFYKLHKE---KGLTTVLV-THSMEDAARYADQI-VVMHKGTVFLQGT 229 (290)
T ss_pred E---CCcccCCHHHHHHHHHHHHHHHHh---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9 999999999876555554332211 11122122 49999999999999 8899999886654
No 134
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.57 E-value=6.5e-16 Score=138.50 Aligned_cols=167 Identities=16% Similarity=0.136 Sum_probs=102.9
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH--------HHh--hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--------LCQ--LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~--------l~~--~~~~ 82 (350)
.-.++++++.+|++++|+|+||||||||+++|+|. .+|++|.|.++|.++.. ... .|.+
T Consensus 16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~ 84 (214)
T cd03292 16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE-----------ELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVF 84 (214)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEcccCCHHHHHHHHHheEEEe
Confidence 34678899999999999999999999999999999 58999999999875431 111 1222
Q ss_pred CC-CCCcceeeeeeccccccccc--Cccc---cchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCC
Q 018809 83 KS-AVPAFLEIHDIAGLVRGAHE--GQGL---GNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 83 ~~-~~~~~l~~~D~~g~~~~~~~--~~~~---~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
+. .....+++.|...+...... .... ....++.+...+ ..+.+++++ .+|+++++|
T Consensus 85 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD--- 161 (214)
T cd03292 85 QDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIAD--- 161 (214)
T ss_pred cCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEe---
Confidence 22 22223444444332210000 0000 001111111000 115677777 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~ 199 (350)
||++++|....+.+...+..+.+ -...+... +|+...+..+||++ ..|++|+
T Consensus 162 EPt~~LD~~~~~~~~~~l~~~~~----~~~tiiiv-tH~~~~~~~~~d~i-~~l~~G~ 213 (214)
T cd03292 162 EPTGNLDPDTTWEIMNLLKKINK----AGTTVVVA-THAKELVDTTRHRV-IALERGK 213 (214)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHH----cCCEEEEE-eCCHHHHHHhCCEE-EEEeCCc
Confidence 99999999987665555433211 01112122 49999988899988 6777664
No 135
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.57 E-value=1.9e-15 Score=136.41 Aligned_cols=174 Identities=15% Similarity=0.143 Sum_probs=108.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH---hhccCCC-CCCc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---QLFKPKS-AVPA 88 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~---~~~~~~~-~~~~ 88 (350)
.-.++++.+++|++++|+|+||+|||||+++|+|. .+|++|.|.++|..+.... ..|.++. ....
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~ 83 (223)
T TIGR03740 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI-----------LRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYE 83 (223)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEeccccccccEEEEcCCCCccc
Confidence 34678889999999999999999999999999999 6899999999886543110 1122221 1222
Q ss_pred ceeeeeeccccccccc-CccccchHHHHHHHH--------------HHHHHHHhhc-CCCceeeecCCCCCCchhHHHHH
Q 018809 89 FLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (350)
Q Consensus 89 ~l~~~D~~g~~~~~~~-~~~~~~~~l~~l~~~--------------d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~ 152 (350)
.+++.|+..+...... .......+++.+... ..-+.+++++ .+|+++++| ||++++|....
T Consensus 84 ~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllD---EP~~~LD~~~~ 160 (223)
T TIGR03740 84 NLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILD---EPTNGLDPIGI 160 (223)
T ss_pred cCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEEC---CCccCCCHHHH
Confidence 2344444322110000 000001111111100 0115677777 899999999 99999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 153 el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
+.+...+..+.+ ....+... +|+...+..+|+++ ..|.+|++...++.
T Consensus 161 ~~l~~~L~~~~~----~~~tiii~-sH~~~~~~~~~d~i-~~l~~g~i~~~~~~ 208 (223)
T TIGR03740 161 QELRELIRSFPE----QGITVILS-SHILSEVQQLADHI-GIISEGVLGYQGKI 208 (223)
T ss_pred HHHHHHHHHHHH----CCCEEEEE-cCCHHHHHHhcCEE-EEEeCCEEEEecCh
Confidence 666555433211 01111122 49999999999999 88899988766543
No 136
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.57 E-value=5.2e-16 Score=141.49 Aligned_cols=171 Identities=16% Similarity=0.154 Sum_probs=104.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH----H-h-hccC-C-C
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----C-Q-LFKP-K-S 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l----~-~-~~~~-~-~ 84 (350)
.-.++++.+.+|++++|+|+||||||||+++|+|. .+|++|.|.++|...... . . .|.+ + .
T Consensus 36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~ 104 (236)
T cd03267 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL-----------LQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKT 104 (236)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCEEccccchhhcccEEEEcCCcc
Confidence 44678899999999999999999999999999999 589999999988653211 0 1 1211 1 1
Q ss_pred CCCcceeeeeeccccccccc--Ccc---ccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCC
Q 018809 85 AVPAFLEIHDIAGLVRGAHE--GQG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~--~~~---~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~ 144 (350)
..+..+++.|+..+...... ... ....+++.+...+ ..+.+++++ .+|+++++| ||+
T Consensus 105 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt 181 (236)
T cd03267 105 QLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLD---EPT 181 (236)
T ss_pred ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCC
Confidence 22223344443322111000 000 0001111110000 115577777 899999999 999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccc
Q 018809 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (350)
Q Consensus 145 ~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~ 202 (350)
+++|....+.+...+..+.+. ....+... +|+...+..+|+++ .+|.+|+++.
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~---~~~tiiiv-sH~~~~~~~~~d~i-~~l~~G~i~~ 234 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRE---RGTTVLLT-SHYMKDIEALARRV-LVIDKGRLLY 234 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhc---CCCEEEEE-ecCHHHHHHhCCEE-EEEeCCEEEe
Confidence 999999976655554332211 01112122 49999999999999 7788887643
No 137
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.56 E-value=6.1e-15 Score=126.87 Aligned_cols=146 Identities=20% Similarity=0.263 Sum_probs=96.3
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceee
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~ 92 (350)
.-.+++.++++|++++|+|+||+|||||+++|+|. .+|.+|.|.++|.++...... ......+.+
T Consensus 15 vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~v~~~g~~~~~~~~~----~~~~~~i~~ 79 (163)
T cd03216 15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL-----------YKPDSGEILVDGKEVSFASPR----DARRAGIAM 79 (163)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEECCcCCHH----HHHhcCeEE
Confidence 34677889999999999999999999999999999 589999999998654321100 000000111
Q ss_pred eeecccccccccCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018809 93 HDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEK 171 (350)
Q Consensus 93 ~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~ 171 (350)
+ .. .+.+++ +++. +++++ .+|+++++| ||++++|....+.+...+..+.+ -..
T Consensus 80 ~------~q----LS~G~~--qrl~-------laral~~~p~illlD---EP~~~LD~~~~~~l~~~l~~~~~----~~~ 133 (163)
T cd03216 80 V------YQ----LSVGER--QMVE-------IARALARNARLLILD---EPTAALTPAEVERLFKVIRRLRA----QGV 133 (163)
T ss_pred E------Ee----cCHHHH--HHHH-------HHHHHhcCCCEEEEE---CCCcCCCHHHHHHHHHHHHHHHH----CCC
Confidence 1 00 112222 3333 44444 599999999 99999999987666555433211 011
Q ss_pred HHhhcccccHHHHHHHHHHHHHHhhcCCcc
Q 018809 172 SMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (350)
Q Consensus 172 ~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~ 201 (350)
.+... +|+...+..+++++ ..|.+|+++
T Consensus 134 tiii~-sh~~~~~~~~~d~~-~~l~~g~i~ 161 (163)
T cd03216 134 AVIFI-SHRLDEVFEIADRV-TVLRDGRVV 161 (163)
T ss_pred EEEEE-eCCHHHHHHhCCEE-EEEECCEEE
Confidence 11122 49999899999998 777877654
No 138
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=5.2e-16 Score=143.15 Aligned_cols=172 Identities=13% Similarity=0.172 Sum_probs=104.7
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH--hhccCCC-CCCcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKS-AVPAF 89 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~--~~~~~~~-~~~~~ 89 (350)
.-.+++.++++|++++|+|+||||||||+++|+|. .+|++|.|.++|.++.... ..|.++. .....
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~ 84 (255)
T PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF-----------VPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPW 84 (255)
T ss_pred eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCCcEEEEeCCCccCCC
Confidence 34678899999999999999999999999999999 5899999999886543211 1122221 12222
Q ss_pred eeeeeeccccccccc--Cc---cccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCchhHH
Q 018809 90 LEIHDIAGLVRGAHE--GQ---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (350)
Q Consensus 90 l~~~D~~g~~~~~~~--~~---~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (350)
.++.++..+...... .. .....+++.+...+. -+.+++++ .+|+++++| ||++++|.
T Consensus 85 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD---EPt~~LD~ 161 (255)
T PRK11248 85 RNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLD---EPFGALDA 161 (255)
T ss_pred CcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCH
Confidence 344443322110000 00 000111111111110 15577777 899999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhh--cCCcccc
Q 018809 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ--DGKDVRL 203 (350)
Q Consensus 150 ~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~--~g~~~~~ 203 (350)
.....+...+..+.+ +....+... +|+...+..+|+++ ..|. +|+++..
T Consensus 162 ~~~~~l~~~L~~~~~---~~g~tviiv-sH~~~~~~~~~d~i-~~l~~~~G~i~~~ 212 (255)
T PRK11248 162 FTREQMQTLLLKLWQ---ETGKQVLLI-THDIEEAVFMATEL-VLLSPGPGRVVER 212 (255)
T ss_pred HHHHHHHHHHHHHHH---hcCCEEEEE-eCCHHHHHHhCCEE-EEEeCCCcEEEEE
Confidence 987666555433211 111112122 49999999999998 7776 4776544
No 139
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.56 E-value=4.9e-16 Score=140.72 Aligned_cols=169 Identities=18% Similarity=0.227 Sum_probs=102.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH----------Hh-hcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----------CQ-LFK 81 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l----------~~-~~~ 81 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|..+... .. .|.
T Consensus 25 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 93 (228)
T PRK10584 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGL-----------DDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFV 93 (228)
T ss_pred EEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCeeEEECCEEcccCCHHHHHHHHhheEEEE
Confidence 34678899999999999999999999999999999 589999999998754321 01 122
Q ss_pred CCC-CCCcceeeeeeccccc---cccc--CccccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCC
Q 018809 82 PKS-AVPAFLEIHDIAGLVR---GAHE--GQGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 82 ~~~-~~~~~l~~~D~~g~~~---~~~~--~~~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~ 140 (350)
++. .....+++.|...+.. .... .......+++.+...+. -+.+++++ .+|+++++|
T Consensus 94 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllD-- 171 (228)
T PRK10584 94 FQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFAD-- 171 (228)
T ss_pred EcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 222 2222334444433211 0000 00000111111111111 15677777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~ 201 (350)
||++++|....+.+...+..+.+. ....+... +|+...+. .||++ ..|.+|+++
T Consensus 172 -EPt~~LD~~~~~~l~~~l~~~~~~---~~~tii~~-sH~~~~~~-~~d~i-~~l~~g~i~ 225 (228)
T PRK10584 172 -EPTGNLDRQTGDKIADLLFSLNRE---HGTTLILV-THDLQLAA-RCDRR-LRLVNGQLQ 225 (228)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHHHh---cCCEEEEE-ecCHHHHH-hCCEE-EEEECCEEE
Confidence 999999999876665554333211 11122122 48888764 48888 777777653
No 140
>PRK00089 era GTPase Era; Reviewed
Probab=99.56 E-value=1.3e-15 Score=143.05 Aligned_cols=195 Identities=22% Similarity=0.249 Sum_probs=122.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
...++|+|+||||||||+|.|+|....+ ++.|.||.....|.+..++ .++.++|+||+....
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~-----------------~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD-----------------AQIIFVDTPGIHKPK 67 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC-----------------ceEEEEECCCCCCch
Confidence 3568999999999999999999998765 8999999988777665432 358999999987544
Q ss_pred cc-CccccchHHHHHHHHHHHHHHHhhcCCCc---eee---ecCCCCCC----chhHHH-HHHHHHHHHHHHHHHHHHHH
Q 018809 103 HE-GQGLGNSFLSHIRAVDGIFHVLRAFEDPD---IIH---VDDSVDPV----RDLEVI-SAELRLKDIEFMERRIEDVE 170 (350)
Q Consensus 103 ~~-~~~~~~~~l~~l~~~d~~l~vv~a~~~~~---vl~---ld~~~eP~----~~ld~~-~~el~~~~l~~l~~~~~~~~ 170 (350)
.. +..+.......+..+|++++|+|+..... ..+ +.....|. +.+|.. +.+.....+..+.+... ..
T Consensus 68 ~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~-~~ 146 (292)
T PRK00089 68 RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMD-FA 146 (292)
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCC-CC
Confidence 22 12222334456677788777777643110 000 00001121 233333 22222222222211110 11
Q ss_pred HHHhhcccccHHHHHHHHHHHHHHhhcCCcccc-CCCChhH-----HHHHHHh-hhhhcCCcchhcccchhhhh
Q 018809 171 KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IEILNTF-QLLTAKPVVYLVNMNEKDYQ 237 (350)
Q Consensus 171 ~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~-~~~t~~~-----~e~i~~~-~~~~~kp~~~~~n~~~~~~~ 237 (350)
..+..| +....++.++++.+...++.|+.+++ +..|+.+ .|++|+. +...++++||.+.+..+.+.
T Consensus 147 ~i~~iS-A~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~~~~~ 219 (292)
T PRK00089 147 EIVPIS-ALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEIEKFE 219 (292)
T ss_pred eEEEec-CCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEEEEEE
Confidence 112223 35667788999999899999988877 5566654 3788988 77789999999998877664
No 141
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=2.4e-16 Score=147.72 Aligned_cols=175 Identities=16% Similarity=0.194 Sum_probs=110.0
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH---------HHh--hc
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LCQ--LF 80 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~---------l~~--~~ 80 (350)
+.-..++++|++|+++||+|+||||||||+++|+|. .+|+.|.|.++|.++.. +.. .|
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~ 89 (286)
T PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL-----------LKPTTGTVTVDDITITHKTKDKYIRPVRKRIGM 89 (286)
T ss_pred CceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccchHHHHHhheEE
Confidence 355788999999999999999999999999999999 68999999999876521 111 12
Q ss_pred cCCCC--CCcceeeeeeccccccccc-C----ccccchHHHHHHHH-HH--------------HHHHHhhc-CCCceeee
Q 018809 81 KPKSA--VPAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAV-DG--------------IFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 81 ~~~~~--~~~~l~~~D~~g~~~~~~~-~----~~~~~~~l~~l~~~-d~--------------~l~vv~a~-~~~~vl~l 137 (350)
.++.. .....++.|...+...... . ......++..+... +. -+.+++++ .+|+++++
T Consensus 90 v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illl 169 (286)
T PRK13646 90 VFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVL 169 (286)
T ss_pred EecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 22221 1111244444433211000 0 00001111111110 10 15577777 89999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++++|......+...+..+.+. ...++... +|+...+..+||++ .+|.+|+++..++
T Consensus 170 D---EPt~~LD~~~~~~l~~~l~~l~~~---~g~tvl~v-tH~~~~~~~~~dri-~~l~~G~i~~~g~ 229 (286)
T PRK13646 170 D---EPTAGLDPQSKRQVMRLLKSLQTD---ENKTIILV-SHDMNEVARYADEV-IVMKEGSIVSQTS 229 (286)
T ss_pred E---CCcccCCHHHHHHHHHHHHHHHHh---CCCEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9 999999999976655554333211 11122122 49999999999999 8899999886654
No 142
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=9.1e-16 Score=137.70 Aligned_cols=167 Identities=16% Similarity=0.189 Sum_probs=104.1
Q ss_pred cccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH---------HHh--hccCCC
Q 018809 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LCQ--LFKPKS 84 (350)
Q Consensus 16 ~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~---------l~~--~~~~~~ 84 (350)
+++.++.+ ++++|+|+||||||||+++|+|. .+|++|.|.++|.++.. ... .|.++.
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~ 83 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGL-----------EKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ 83 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEecccccchhhhhhHhhcEEEEecC
Confidence 78899999 99999999999999999999999 68999999998865421 111 122222
Q ss_pred -CCCcceeeeeeccccccccc---CccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCc
Q 018809 85 -AVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (350)
Q Consensus 85 -~~~~~l~~~D~~g~~~~~~~---~~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~ 145 (350)
..+..+++.|+..+...... .......+++.+...+ .-+.+++++ .+|+++++| ||++
T Consensus 84 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~ 160 (214)
T cd03297 84 YALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLD---EPFS 160 (214)
T ss_pred CccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEc---CCcc
Confidence 22223344444332211000 0000111121111111 115677777 899999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccc
Q 018809 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (350)
Q Consensus 146 ~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~ 202 (350)
++|....+.+...+..+.+. ....+... +|+...+..+|+++ .+|.+|+++.
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~---~~~tiii~-sH~~~~~~~~~d~i-~~l~~G~i~~ 212 (214)
T cd03297 161 ALDRALRLQLLPELKQIKKN---LNIPVIFV-THDLSEAEYLADRI-VVMEDGRLQY 212 (214)
T ss_pred cCCHHHHHHHHHHHHHHHHH---cCcEEEEE-ecCHHHHHHhcCEE-EEEECCEEEe
Confidence 99999876665554333211 11122122 49999999999999 8888887643
No 143
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=4.6e-16 Score=146.00 Aligned_cols=173 Identities=14% Similarity=0.124 Sum_probs=109.7
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH---------HHh--hcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LCQ--LFK 81 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~---------l~~--~~~ 81 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|++|.|.++|..+.. +.. .|.
T Consensus 21 ~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v 89 (288)
T PRK13643 21 ALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL-----------LQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89 (288)
T ss_pred ceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC-----------CCCCCcEEEECCEECccccccccHHHHHhhEEEE
Confidence 55789999999999999999999999999999999 68999999999876421 111 122
Q ss_pred CCC---CCCcceeeeeeccccccccc--Ccc---ccchHHHHHHHH-HH--------------HHHHHhhc-CCCceeee
Q 018809 82 PKS---AVPAFLEIHDIAGLVRGAHE--GQG---LGNSFLSHIRAV-DG--------------IFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 82 ~~~---~~~~~l~~~D~~g~~~~~~~--~~~---~~~~~l~~l~~~-d~--------------~l~vv~a~-~~~~vl~l 137 (350)
++. .+. ..++.|...+...... ... .....++.+... +. -+.+++++ .+|+++++
T Consensus 90 ~q~~~~~l~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illL 168 (288)
T PRK13643 90 FQFPESQLF-EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVL 168 (288)
T ss_pred ecCcchhcc-cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 221 111 1344454433211100 000 001111111110 00 15567777 79999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
| ||++++|......+...+..+.+ ...++.. .+|+...+..+||++ .+|.+|+++..++.
T Consensus 169 D---EPt~gLD~~~~~~l~~~l~~l~~----~g~til~-vtHd~~~~~~~~dri-~~l~~G~i~~~g~~ 228 (288)
T PRK13643 169 D---EPTAGLDPKARIEMMQLFESIHQ----SGQTVVL-VTHLMDDVADYADYV-YLLEKGHIISCGTP 228 (288)
T ss_pred E---CCccCCCHHHHHHHHHHHHHHHH----CCCEEEE-EecCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 9 99999999887555554332211 1112212 249999999999999 89999998876653
No 144
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=1.5e-15 Score=131.93 Aligned_cols=150 Identities=20% Similarity=0.328 Sum_probs=95.3
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh------hccCCC-C
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ------LFKPKS-A 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~------~~~~~~-~ 85 (350)
.-++++..+.+|+.++|+|+||||||||+++|+|. .+|.+|.|.++|..+..... .|.++. .
T Consensus 15 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~ 83 (173)
T cd03230 15 ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL-----------LKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPS 83 (173)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEcccchHhhhccEEEEecCCc
Confidence 44678899999999999999999999999999999 57899999999876532110 011111 0
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHH
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 164 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~ 164 (350)
.....++.|... .+.|++ ++ +.+++++ .+|+++++| ||+..+|....+.+...+..+.+
T Consensus 84 ~~~~~tv~~~~~--------LS~G~~--qr-------v~laral~~~p~illlD---EPt~~LD~~~~~~l~~~l~~~~~ 143 (173)
T cd03230 84 LYENLTVRENLK--------LSGGMK--QR-------LALAQALLHDPELLILD---EPTSGLDPESRREFWELLRELKK 143 (173)
T ss_pred cccCCcHHHHhh--------cCHHHH--HH-------HHHHHHHHcCCCEEEEe---CCccCCCHHHHHHHHHHHHHHHH
Confidence 000111111110 011111 22 3455666 699999999 99999999987655555433221
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCC
Q 018809 165 RIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (350)
Q Consensus 165 ~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~ 199 (350)
+ ...+... +|+...+..+++++ ..|.+|+
T Consensus 144 ---~-g~tiii~-th~~~~~~~~~d~i-~~l~~g~ 172 (173)
T cd03230 144 ---E-GKTILLS-SHILEEAERLCDRV-AILNNGR 172 (173)
T ss_pred ---C-CCEEEEE-CCCHHHHHHhCCEE-EEEeCCC
Confidence 1 1111122 49998888888888 6666664
No 145
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.56 E-value=1.5e-15 Score=139.43 Aligned_cols=173 Identities=17% Similarity=0.239 Sum_probs=107.5
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------------HHh-
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------------LCQ- 78 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------------l~~- 78 (350)
.=.++++++.+|++++|+|+||||||||+++|+|. .+|..|.|.++|..+.. +..
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 86 (250)
T PRK11264 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL-----------EQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQH 86 (250)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEccccccccchhhHHHHhhhh
Confidence 34678899999999999999999999999999999 57899999998865421 111
Q ss_pred -hccCCC-CCCcceeeeeecccccccccC--c----cccchHHHHHHHH--------------HHHHHHHhhc-CCCcee
Q 018809 79 -LFKPKS-AVPAFLEIHDIAGLVRGAHEG--Q----GLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDII 135 (350)
Q Consensus 79 -~~~~~~-~~~~~l~~~D~~g~~~~~~~~--~----~~~~~~l~~l~~~--------------d~~l~vv~a~-~~~~vl 135 (350)
.|.++. ......++.|+..+......+ . .....+++.+... ..-+.+++++ .+|+++
T Consensus 87 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~ll 166 (250)
T PRK11264 87 VGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVI 166 (250)
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEE
Confidence 122222 122234444444321100000 0 0000111111000 0115577777 899999
Q ss_pred eecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 136 ~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++| ||++++|....+.+...+..+.+ ....+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 167 lLD---EPt~~LD~~~~~~l~~~l~~~~~----~~~tvi~~-tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 227 (250)
T PRK11264 167 LFD---EPTSALDPELVGEVLNTIRQLAQ----EKRTMVIV-THEMSFARDVADRA-IFMDQGRIVEQGP 227 (250)
T ss_pred EEe---CCCccCCHHHHHHHHHHHHHHHh----cCCEEEEE-eCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 999 99999999987666555433211 11122122 49999999999999 8889998876543
No 146
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.56 E-value=1.1e-15 Score=141.04 Aligned_cols=172 Identities=16% Similarity=0.238 Sum_probs=108.2
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH------------------
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------------------ 75 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~------------------ 75 (350)
-.++++++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++..
T Consensus 21 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~ 89 (257)
T PRK10619 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL-----------EKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRL 89 (257)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEcccccccccccccccchHHHH
Confidence 4678999999999999999999999999999999 58899999999875431
Q ss_pred HHh--hccCCC-CCCcceeeeeeccccc----cccc--CccccchHHHHHHHHH---------------HHHHHHhhc-C
Q 018809 76 LCQ--LFKPKS-AVPAFLEIHDIAGLVR----GAHE--GQGLGNSFLSHIRAVD---------------GIFHVLRAF-E 130 (350)
Q Consensus 76 l~~--~~~~~~-~~~~~l~~~D~~g~~~----~~~~--~~~~~~~~l~~l~~~d---------------~~l~vv~a~-~ 130 (350)
... .|.++. .....+++.|+..+.. .... .......+++.+...+ .-+.+++++ .
T Consensus 90 ~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~ 169 (257)
T PRK10619 90 LRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM 169 (257)
T ss_pred HhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence 011 122222 1222244455443211 0000 0000011111111101 125577777 8
Q ss_pred CCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 131 DPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 131 ~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+|+++++| ||++++|....+.+...+..+.+ ....+... +|+...+..+|+++ .+|++|+++..++
T Consensus 170 ~p~llllD---EPt~~LD~~~~~~l~~~l~~l~~----~g~tiiiv-sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 235 (257)
T PRK10619 170 EPEVLLFD---EPTSALDPELVGEVLRIMQQLAE----EGKTMVVV-THEMGFARHVSSHV-IFLHQGKIEEEGA 235 (257)
T ss_pred CCCEEEEe---CCcccCCHHHHHHHHHHHHHHHh----cCCEEEEE-eCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 99999999 99999999987655554432211 11122122 49999999999999 8889998876544
No 147
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=4.5e-16 Score=141.57 Aligned_cols=172 Identities=16% Similarity=0.162 Sum_probs=104.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--------H-h--hcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C-Q--LFK 81 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------~-~--~~~ 81 (350)
.=.+++.++++|++++|+|+||||||||+++|+|. .+|++|.|.++|+++... . . .|.
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v 92 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL-----------DTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFI 92 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEcCcCCHHHHHHHHhccEEEE
Confidence 44678899999999999999999999999999999 589999999998764321 0 1 122
Q ss_pred CCC-CCCcceeeeeeccccc---cccc--CccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCC
Q 018809 82 PKS-AVPAFLEIHDIAGLVR---GAHE--GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 82 ~~~-~~~~~l~~~D~~g~~~---~~~~--~~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~ 140 (350)
++. ..+..+++.++..+.. .... .......+++.+...+ ..+.+++++ .+|+++++|
T Consensus 93 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD-- 170 (233)
T PRK11629 93 YQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLAD-- 170 (233)
T ss_pred ecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 222 2222334444433211 0000 0000011111111101 115577777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
||++++|....+.+...+..+.+ +....+... +|+...+..+ +++ .+|.+|+++..+
T Consensus 171 -EPt~~LD~~~~~~l~~~l~~~~~---~~g~tvii~-sH~~~~~~~~-~~~-~~l~~G~i~~~~ 227 (233)
T PRK11629 171 -EPTGNLDARNADSIFQLLGELNR---LQGTAFLVV-THDLQLAKRM-SRQ-LEMRDGRLTAEL 227 (233)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHHH---hCCCEEEEE-eCCHHHHHhh-CEE-EEEECCEEEEEe
Confidence 99999999987666555433211 011112122 4999888775 577 678888876543
No 148
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=4.2e-16 Score=145.60 Aligned_cols=173 Identities=15% Similarity=0.095 Sum_probs=108.3
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~--~~~~~~~ 85 (350)
.-..++..|.+|+++||+|+||||||||+++|+|. .+|++|.|.++|.++.. +.. .|.++..
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 90 (279)
T PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL-----------LEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNP 90 (279)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEECCcCcHHHHHhhceEEEcCh
Confidence 44678899999999999999999999999999999 68999999999976532 111 1222221
Q ss_pred --CCcceeeeeeccccccccc-Cc----cccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCC
Q 018809 86 --VPAFLEIHDIAGLVRGAHE-GQ----GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDP 143 (350)
Q Consensus 86 --~~~~l~~~D~~g~~~~~~~-~~----~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP 143 (350)
.....++.|...+...... .. ......++.+...+. -+.+++++ .+|+++++| ||
T Consensus 91 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLD---EP 167 (279)
T PRK13650 91 DNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILD---EA 167 (279)
T ss_pred HHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---CC
Confidence 1122345554433211100 00 000111111111111 15677887 899999999 99
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 144 ~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+..+|......+...+..+.+. ....+.. .+|+...+ ..|+++ .+|.+|+++..++
T Consensus 168 t~~LD~~~~~~l~~~l~~l~~~---~g~tili-vtH~~~~~-~~~dri-~~l~~G~i~~~g~ 223 (279)
T PRK13650 168 TSMLDPEGRLELIKTIKGIRDD---YQMTVIS-ITHDLDEV-ALSDRV-LVMKNGQVESTST 223 (279)
T ss_pred cccCCHHHHHHHHHHHHHHHHh---cCCEEEE-EecCHHHH-HhCCEE-EEEECCEEEEECC
Confidence 9999999876655554333221 1112212 24999888 579999 8889999876654
No 149
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=2.2e-15 Score=130.64 Aligned_cols=146 Identities=22% Similarity=0.314 Sum_probs=92.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-------hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-------~~~~~~~ 85 (350)
.-.+++.++++|++++|+|+||+|||||+++|+|. .+|.+|.+.++|..+..... .|.++..
T Consensus 17 ~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~ 85 (171)
T cd03228 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL-----------YDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDP 85 (171)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCc
Confidence 34678899999999999999999999999999999 57899999999976532210 1111110
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHH
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 164 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~ 164 (350)
.....++.|.. .+.|++ ++ +.+++++ .+|+++++| ||++++|....+.+...+..+.+
T Consensus 86 ~~~~~t~~e~l---------LS~G~~--~r-------l~la~al~~~p~llllD---EP~~gLD~~~~~~l~~~l~~~~~ 144 (171)
T cd03228 86 FLFSGTIRENI---------LSGGQR--QR-------IAIARALLRDPPILILD---EATSALDPETEALILEALRALAK 144 (171)
T ss_pred hhccchHHHHh---------hCHHHH--HH-------HHHHHHHhcCCCEEEEE---CCCcCCCHHHHHHHHHHHHHhcC
Confidence 00001111111 111111 22 3445555 699999999 99999999887655555433211
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcC
Q 018809 165 RIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (350)
Q Consensus 165 ~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g 198 (350)
...+... +|+...+.. |+++ ..|.+|
T Consensus 145 -----~~tii~~-sh~~~~~~~-~d~~-~~l~~g 170 (171)
T cd03228 145 -----GKTVIVI-AHRLSTIRD-ADRI-IVLDDG 170 (171)
T ss_pred -----CCEEEEE-ecCHHHHHh-CCEE-EEEcCC
Confidence 1112122 488888766 8877 555554
No 150
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=5.9e-15 Score=134.89 Aligned_cols=173 Identities=18% Similarity=0.241 Sum_probs=106.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchh-----------HHHh--h
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-----------WLCQ--L 79 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~-----------~l~~--~ 79 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++. .... .
T Consensus 17 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~ 85 (242)
T PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL-----------EMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVG 85 (242)
T ss_pred eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEecccccccchhhHHHHHhheE
Confidence 34678899999999999999999999999999999 5899999999987541 1111 1
Q ss_pred ccCCC-CCCcceeeeeeccccc----ccccC--ccccchHHHHHHHH--------------HHHHHHHhhc-CCCceeee
Q 018809 80 FKPKS-AVPAFLEIHDIAGLVR----GAHEG--QGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 80 ~~~~~-~~~~~l~~~D~~g~~~----~~~~~--~~~~~~~l~~l~~~--------------d~~l~vv~a~-~~~~vl~l 137 (350)
|.++. .....+++.+...... +.... ......+++.+... ..-+.+++++ .+|+++++
T Consensus 86 ~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llil 165 (242)
T PRK11124 86 MVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLF 165 (242)
T ss_pred EEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 22222 1222234444332100 00000 00000111111000 0115677887 89999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++++|....+.+...+..+.+ ....+... +|+...+.++|+++ .+|.+|+++..++
T Consensus 166 D---EPt~~LD~~~~~~l~~~l~~~~~----~~~tii~~-sh~~~~~~~~~d~i-~~l~~g~i~~~~~ 224 (242)
T PRK11124 166 D---EPTAALDPEITAQIVSIIRELAE----TGITQVIV-THEVEVARKTASRV-VYMENGHIVEQGD 224 (242)
T ss_pred c---CCCCcCCHHHHHHHHHHHHHHHH----cCCEEEEE-eCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 9 99999999887655554433211 11112122 49999999999999 8889998876543
No 151
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.55 E-value=5.9e-16 Score=140.72 Aligned_cols=173 Identities=13% Similarity=0.173 Sum_probs=107.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----hhccCCC-CC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AV 86 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~~~~~~~-~~ 86 (350)
.-.++++++.+|++++|+|+||+|||||+++|+|. .+|..|.|.++|.++.... ..|.++. ..
T Consensus 15 il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~-----------~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~ 83 (232)
T cd03300 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF-----------ETPTSGEILLDGKDITNLPPHKRPVNTVFQNYAL 83 (232)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEcCcCChhhcceEEEeccccc
Confidence 44678899999999999999999999999999999 6899999999987553211 1122222 11
Q ss_pred Ccceeeeeeccccccccc--Cc---cccchHHHHHHHH--------------HHHHHHHhhc-CCCceeeecCCCCCCch
Q 018809 87 PAFLEIHDIAGLVRGAHE--GQ---GLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~--~~---~~~~~~l~~l~~~--------------d~~l~vv~a~-~~~~vl~ld~~~eP~~~ 146 (350)
...+++.|+..+...... .. ......++.++.. ..-+.+++++ .+|+++++| ||+.+
T Consensus 84 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD---EP~~g 160 (232)
T cd03300 84 FPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD---EPLGA 160 (232)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCccc
Confidence 122344444332110000 00 0000001100000 0115577777 899999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 147 ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
+|......+...+..+.+ +....+... +|+...+.++||++ ..|.+|++...+
T Consensus 161 LD~~~~~~l~~~l~~~~~---~~~~tiii~-sh~~~~~~~~~d~i-~~l~~G~~~~~~ 213 (232)
T cd03300 161 LDLKLRKDMQLELKRLQK---ELGITFVFV-THDQEEALTMSDRI-AVMNKGKIQQIG 213 (232)
T ss_pred CCHHHHHHHHHHHHHHHH---HcCCEEEEE-eCCHHHHHHhcCEE-EEEECCEEEecC
Confidence 999997665555433221 111122122 39999999999999 888889876554
No 152
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.55 E-value=3.3e-15 Score=132.14 Aligned_cols=160 Identities=18% Similarity=0.229 Sum_probs=101.9
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCcccc--CCcceEEEeCCcchhHH--Hh--hccCCC-
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTI--EPNEARVNIPDERFEWL--CQ--LFKPKS- 84 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~--~p~~G~i~~~~~~l~~l--~~--~~~~~~- 84 (350)
+.-.++++.+.+|++++|+|+||||||||+++|+|. . +|.+|.|.++|+++... .. .|.++.
T Consensus 23 ~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl-----------~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 91 (194)
T cd03213 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR-----------RTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDD 91 (194)
T ss_pred cceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCceEEEECCEeCchHhhhheEEEccCcc
Confidence 455788999999999999999999999999999999 6 78999999998765321 00 122221
Q ss_pred CCCcceeeeeecccccccccCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHH
Q 018809 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFME 163 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~ 163 (350)
.....+++.|+..+..... ..+.|++ ++ +.+++++ .+|+++++| ||++++|....+.+...+..+.
T Consensus 92 ~~~~~~t~~~~i~~~~~~~-~LS~G~~--qr-------v~laral~~~p~illlD---EP~~~LD~~~~~~l~~~l~~~~ 158 (194)
T cd03213 92 ILHPTLTVRETLMFAAKLR-GLSGGER--KR-------VSIALELVSNPSLLFLD---EPTSGLDSSSALQVMSLLRRLA 158 (194)
T ss_pred cCCCCCcHHHHHHHHHHhc-cCCHHHH--HH-------HHHHHHHHcCCCEEEEe---CCCcCCCHHHHHHHHHHHHHHH
Confidence 1122233434332211100 0111111 22 3455555 699999999 9999999988765555443221
Q ss_pred HHHHHHHHHHhhcccccHH-HHHHHHHHHHHHhhcCCcc
Q 018809 164 RRIEDVEKSMKRSNDKQLK-IEHELCQRVKAWLQDGKDV 201 (350)
Q Consensus 164 ~~~~~~~~~~~~~~~h~~~-~~~~l~~~i~~~L~~g~~~ 201 (350)
+ + ...+... +|+.. .+..+||++ .+|.+|++.
T Consensus 159 ~---~-~~tiii~-sh~~~~~~~~~~d~v-~~l~~G~i~ 191 (194)
T cd03213 159 D---T-GRTIICS-IHQPSSEIFELFDKL-LLLSQGRVI 191 (194)
T ss_pred h---C-CCEEEEE-ecCchHHHHHhcCEE-EEEeCCEEE
Confidence 1 0 1111122 38885 678889999 888888764
No 153
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.55 E-value=5.6e-15 Score=140.96 Aligned_cols=98 Identities=36% Similarity=0.590 Sum_probs=83.7
Q ss_pred cccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeee
Q 018809 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (350)
Q Consensus 16 ~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~ 95 (350)
-+...++-=.-|||||.||||||||+|+|++....+++|||||+.|+.|.+.+.+. ..+.++|+
T Consensus 150 ~~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~----------------~~~~i~D~ 213 (335)
T PRK12299 150 WLRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY----------------KSFVIADI 213 (335)
T ss_pred EEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC----------------cEEEEEeC
Confidence 33344444457899999999999999999999888899999999999999988531 24889999
Q ss_pred cccccccccCccccchHHHHHHHHHHHHHHHhhc
Q 018809 96 AGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 96 ~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~ 129 (350)
||+...++.+.+++..|+++++.++++++|+|+.
T Consensus 214 PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s 247 (335)
T PRK12299 214 PGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIE 247 (335)
T ss_pred CCccCCCCccccHHHHHHHHhhhcCEEEEEEcCC
Confidence 9999988888888899999999999999988874
No 154
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.55 E-value=1.6e-15 Score=139.19 Aligned_cols=171 Identities=18% Similarity=0.230 Sum_probs=108.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc-----ceEEEeCCcchhH-------HHh--
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-----EARVNIPDERFEW-------LCQ-- 78 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~-----~G~i~~~~~~l~~-------l~~-- 78 (350)
.-.+++.++++|++++|+|+||||||||+++|+|. .+|. +|.|.++|.++.. ...
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 84 (247)
T TIGR00972 16 ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM-----------NDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRV 84 (247)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCcCCCCceEEEECCEEccccccchHHHHhhe
Confidence 34678999999999999999999999999999999 4666 9999999876532 111
Q ss_pred hccCCC-CCCcceeeeeeccccccccc---Ccc---ccchHHHHHHHH----H--------------HHHHHHhhc-CCC
Q 018809 79 LFKPKS-AVPAFLEIHDIAGLVRGAHE---GQG---LGNSFLSHIRAV----D--------------GIFHVLRAF-EDP 132 (350)
Q Consensus 79 ~~~~~~-~~~~~l~~~D~~g~~~~~~~---~~~---~~~~~l~~l~~~----d--------------~~l~vv~a~-~~~ 132 (350)
.|.++. .... .++.|+..+...... ... .....++.+... + .-+.+++++ .+|
T Consensus 85 ~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p 163 (247)
T TIGR00972 85 GMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEP 163 (247)
T ss_pred EEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 122222 1111 344444332110000 000 000111111100 1 115577777 799
Q ss_pred ceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 133 DIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 133 ~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+++++| ||++++|......+...+..+.+ . ..+... +|+...+..+||++ .+|++|+++..++
T Consensus 164 ~llllD---EPt~~LD~~~~~~l~~~l~~~~~---~--~tiiiv-sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 226 (247)
T TIGR00972 164 EVLLLD---EPTSALDPIATGKIEELIQELKK---K--YTIVIV-THNMQQAARISDRT-AFFYDGELVEYGP 226 (247)
T ss_pred CEEEEe---CCcccCCHHHHHHHHHHHHHHHh---c--CeEEEE-ecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999999 99999999998766665543322 1 122223 49999999999999 8899998875543
No 155
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.54 E-value=1.9e-15 Score=140.27 Aligned_cols=174 Identities=18% Similarity=0.227 Sum_probs=105.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~--~~~~~~~ 85 (350)
.-..++..+++|++++|+|+||||||||+++|+|. .+|.+|.|.++|..+.. ... .|.++..
T Consensus 28 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 96 (267)
T PRK15112 28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM-----------IEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDP 96 (267)
T ss_pred eeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEECCCCchhhHhccEEEEecCc
Confidence 44678899999999999999999999999999999 68999999999865431 111 1222221
Q ss_pred ---CCcceeeeeecccccccc---cCcc---ccchHHHHHHH---------------HHHHHHHHhhc-CCCceeeecCC
Q 018809 86 ---VPAFLEIHDIAGLVRGAH---EGQG---LGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 86 ---~~~~l~~~D~~g~~~~~~---~~~~---~~~~~l~~l~~---------------~d~~l~vv~a~-~~~~vl~ld~~ 140 (350)
....+++.+...+..... .... ....+++.+.. ...-+.+++++ .+|+++++|
T Consensus 97 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD-- 174 (267)
T PRK15112 97 STSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIAD-- 174 (267)
T ss_pred hhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEc--
Confidence 111112222211100000 0000 00011111110 00115567777 799999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+. ....+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 175 -EPt~~LD~~~~~~l~~~l~~~~~~---~g~tviiv-sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 233 (267)
T PRK15112 175 -EALASLDMSMRSQLINLMLELQEK---QGISYIYV-TQHLGMMKHISDQV-LVMHQGEVVERGS 233 (267)
T ss_pred -CCcccCCHHHHHHHHHHHHHHHHH---cCcEEEEE-eCCHHHHHHhcCEE-EEEECCEEEecCC
Confidence 999999998876555554333211 11122122 49999999999999 8889998875543
No 156
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.54 E-value=3.4e-15 Score=129.68 Aligned_cols=148 Identities=19% Similarity=0.240 Sum_probs=93.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~ 85 (350)
.-..++..+.+|++++|+|+||+|||||+++|+|. .+|.+|.|.++|.++.... . .|.++..
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL-----------LRPTSGRVRLDGADISQWDPNELGDHVGYLPQDD 85 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCCeEEECCEEcccCCHHHHHhheEEECCCC
Confidence 44678899999999999999999999999999999 5899999999987653211 0 1111111
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHH
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 164 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~ 164 (350)
.....++.|+. .+.|++ +++ .+++++ .+|+++++| ||++++|......+...+..+.+
T Consensus 86 ~~~~~tv~~~l---------LS~G~~--qrv-------~la~al~~~p~~lllD---EPt~~LD~~~~~~l~~~l~~~~~ 144 (173)
T cd03246 86 ELFSGSIAENI---------LSGGQR--QRL-------GLARALYGNPRILVLD---EPNSHLDVEGERALNQAIAALKA 144 (173)
T ss_pred ccccCcHHHHC---------cCHHHH--HHH-------HHHHHHhcCCCEEEEE---CCccccCHHHHHHHHHHHHHHHh
Confidence 00001222211 111222 333 345555 699999999 99999999987666555433211
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCC
Q 018809 165 RIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (350)
Q Consensus 165 ~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~ 199 (350)
....+... +|+...+ ..|+++ ..|.+|+
T Consensus 145 ----~~~tii~~-sh~~~~~-~~~d~v-~~l~~G~ 172 (173)
T cd03246 145 ----AGATRIVI-AHRPETL-ASADRI-LVLEDGR 172 (173)
T ss_pred ----CCCEEEEE-eCCHHHH-HhCCEE-EEEECCC
Confidence 01112122 4888776 478887 6666664
No 157
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.54 E-value=5.9e-16 Score=147.80 Aligned_cols=174 Identities=19% Similarity=0.249 Sum_probs=110.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--------Hh--hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQ--LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------~~--~~~~ 82 (350)
.-.+++.++.+|+++||+|+||||||||+++|+|+ ..|.+|.|.++|.++..+ .. .|.+
T Consensus 36 ~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl-----------~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~ 104 (331)
T PRK15079 36 AVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL-----------VKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIF 104 (331)
T ss_pred EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC-----------CCCCCcEEEECCEECCcCCHHHHHHHhCceEEEe
Confidence 34788999999999999999999999999999999 578999999999765321 11 1122
Q ss_pred CC---CCCcceeeeeecccccccc----cCccc---cchHHHHHHH-HHHH--------------HHHHhhc-CCCceee
Q 018809 83 KS---AVPAFLEIHDIAGLVRGAH----EGQGL---GNSFLSHIRA-VDGI--------------FHVLRAF-EDPDIIH 136 (350)
Q Consensus 83 ~~---~~~~~l~~~D~~g~~~~~~----~~~~~---~~~~l~~l~~-~d~~--------------l~vv~a~-~~~~vl~ 136 (350)
|. .....+++.|........+ ..... ...+++.+.. .+.. +.+++++ .+|++++
T Consensus 105 Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~lli 184 (331)
T PRK15079 105 QDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLII 184 (331)
T ss_pred cCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 22 1222344444432210000 00000 0111111111 0111 5677887 8999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+| ||++.+|......++..+..+.+. ....+... +|++..+..+||++ .+|.+|+++..++
T Consensus 185 lD---EPts~LD~~~~~~i~~lL~~l~~~---~~~til~i-THdl~~~~~~~dri-~vl~~G~ive~g~ 245 (331)
T PRK15079 185 CD---EPVSALDVSIQAQVVNLLQQLQRE---MGLSLIFI-AHDLAVVKHISDRV-LVMYLGHAVELGT 245 (331)
T ss_pred Ee---CCCccCCHHHHHHHHHHHHHHHHH---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 99 999999999986666655443221 11112122 49999999999999 8999999876654
No 158
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.54 E-value=1.6e-15 Score=140.28 Aligned_cols=175 Identities=15% Similarity=0.185 Sum_probs=108.3
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc---ceEEEeCCcchhHH----------Hh-
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDERFEWL----------CQ- 78 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~---~G~i~~~~~~l~~l----------~~- 78 (350)
.=.+++.++.+|++++|+|+||||||||+++|+|. .+|+ +|.|.++|..+... ..
T Consensus 19 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 87 (262)
T PRK09984 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL-----------ITGDKSAGSHIELLGRTVQREGRLARDIRKSRAN 87 (262)
T ss_pred EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCCceEEEECCEecccccccchhHHHHHhh
Confidence 34678899999999999999999999999999999 4554 59999998754221 11
Q ss_pred -hccCCC-CCCcceeeeeecccccccc-----------c--CccccchHHHHHHHHHHH--------------HHHHhhc
Q 018809 79 -LFKPKS-AVPAFLEIHDIAGLVRGAH-----------E--GQGLGNSFLSHIRAVDGI--------------FHVLRAF 129 (350)
Q Consensus 79 -~~~~~~-~~~~~l~~~D~~g~~~~~~-----------~--~~~~~~~~l~~l~~~d~~--------------l~vv~a~ 129 (350)
.|.++. .....+++.+...+..... . ........++.+...+.+ +.+++++
T Consensus 88 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral 167 (262)
T PRK09984 88 TGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARAL 167 (262)
T ss_pred eEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHH
Confidence 233332 2222344444443221000 0 000001111111111111 5677877
Q ss_pred -CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 130 -EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 130 -~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
.+|+++++| ||++++|....+.+...+..+.+. ....+... +|+...+..+|+++ ..|.+|++...++.
T Consensus 168 ~~~p~llllD---EPt~~LD~~~~~~l~~~l~~~~~~---~g~tvii~-tH~~~~~~~~~d~i-~~l~~g~i~~~g~~ 237 (262)
T PRK09984 168 MQQAKVILAD---EPIASLDPESARIVMDTLRDINQN---DGITVVVT-LHQVDYALRYCERI-VALRQGHVFYDGSS 237 (262)
T ss_pred hcCCCEEEec---CccccCCHHHHHHHHHHHHHHHHh---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEeCCH
Confidence 899999999 999999999876655554333211 11112122 49999999999999 88899988766543
No 159
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.54 E-value=1.9e-15 Score=136.92 Aligned_cols=175 Identities=19% Similarity=0.214 Sum_probs=109.1
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH------HHh----hcc
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LCQ----LFK 81 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~------l~~----~~~ 81 (350)
+.-..++..+.+|+.++|+|+||||||||+++|+|+ ..|.+|.|.++|..+.. +.+ +|+
T Consensus 18 ~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GL-----------l~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQ 86 (235)
T COG1122 18 AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL-----------LKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQ 86 (235)
T ss_pred eeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCc-----------CcCCCCEEEECCeeccchhhHHHhhcceEEEEE
Confidence 455788999999999999999999999999999999 78999999999876431 211 222
Q ss_pred CCCCCCcceeeeeeccccccccc--CccccchHHHHHHHHHHH-----------------HHHHhhc-CCCceeeecCCC
Q 018809 82 PKSAVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVDGI-----------------FHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 82 ~~~~~~~~l~~~D~~g~~~~~~~--~~~~~~~~l~~l~~~d~~-----------------l~vv~a~-~~~~vl~ld~~~ 141 (350)
........-++.|-+.++..... ...+..+....+..+..- +.++.++ .+|+++++|
T Consensus 87 npd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLD--- 163 (235)
T COG1122 87 NPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLD--- 163 (235)
T ss_pred CcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEc---
Confidence 21111111123333333221110 000111111111111110 3344444 589999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|......++..+..+.+.. .+++ ...+|+++.+...+|++ ..|.+|++++.++
T Consensus 164 EPta~LD~~~~~~l~~~l~~L~~~~---~~ti-i~~tHd~~~~~~~ad~v-~vl~~G~i~~~g~ 222 (235)
T COG1122 164 EPTAGLDPKGRRELLELLKKLKEEG---GKTI-IIVTHDLELVLEYADRV-VVLDDGKILADGD 222 (235)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcC---CCeE-EEEeCcHHHHHhhCCEE-EEEECCEEeecCC
Confidence 9999999999766655544332211 1112 22259999999999999 9999999988765
No 160
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.54 E-value=1.4e-15 Score=137.52 Aligned_cols=166 Identities=17% Similarity=0.151 Sum_probs=101.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceee
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~ 92 (350)
.-.+++..+++|++++|+|+||||||||+++|+|. .+|.+|.|.++|..+..... ...+...+++
T Consensus 37 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~----~~~~~~~~tv 101 (224)
T cd03220 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI-----------YPPDSGTVTVRGRVSSLLGL----GGGFNPELTG 101 (224)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEchhhcc----cccCCCCCcH
Confidence 34677889999999999999999999999999999 58999999999875432111 0011112233
Q ss_pred eeeccccccccc-C-cc---ccchHHHHHHHH--------------HHHHHHHhhc-CCCceeeecCCCCCCchhHHHHH
Q 018809 93 HDIAGLVRGAHE-G-QG---LGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (350)
Q Consensus 93 ~D~~g~~~~~~~-~-~~---~~~~~l~~l~~~--------------d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~ 152 (350)
.|+..+...... . .. ....+++.+... ..-+.+++++ .+|+++++| ||++++|....
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD---EP~~gLD~~~~ 178 (224)
T cd03220 102 RENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID---EVLAVGDAAFQ 178 (224)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHH
Confidence 333221110000 0 00 000001110000 0115577777 799999999 99999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccc
Q 018809 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (350)
Q Consensus 153 el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~ 202 (350)
..+...+..+.+ + ...+... +|+...+..+++++ ..|.+|+++.
T Consensus 179 ~~~~~~l~~~~~---~-~~tiii~-sH~~~~~~~~~d~i-~~l~~G~i~~ 222 (224)
T cd03220 179 EKCQRRLRELLK---Q-GKTVILV-SHDPSSIKRLCDRA-LVLEKGKIRF 222 (224)
T ss_pred HHHHHHHHHHHh---C-CCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEe
Confidence 555554432211 1 1112122 49999999999998 7778887653
No 161
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=6.2e-16 Score=144.16 Aligned_cols=173 Identities=17% Similarity=0.210 Sum_probs=108.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~ 83 (350)
.-.+++..+.+|+++||+|+||||||||+++|+|. .+|.+|.|.++|..+.. ... .|.++
T Consensus 17 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q 85 (275)
T PRK13639 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI-----------LKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQ 85 (275)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCEECccccchHHHHHhheEEEee
Confidence 44788899999999999999999999999999999 68999999999876521 111 12222
Q ss_pred CC--CCcceeeeeeccccccccc--CccccchHHHHHHHHH-----------------HHHHHHhhc-CCCceeeecCCC
Q 018809 84 SA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVD-----------------GIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 84 ~~--~~~~l~~~D~~g~~~~~~~--~~~~~~~~l~~l~~~d-----------------~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
.. .....++.|...+...... .........+.++..+ ..+.+++++ .+|+++++|
T Consensus 86 ~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD--- 162 (275)
T PRK13639 86 NPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLD--- 162 (275)
T ss_pred ChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence 21 1112344444432211000 0000001111111110 115577777 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+.+ -...+... +|+...+..+||++ .+|.+|+++..++
T Consensus 163 EPt~gLD~~~~~~l~~~l~~l~~----~~~til~v-tH~~~~~~~~~d~i-~~l~~G~i~~~g~ 220 (275)
T PRK13639 163 EPTSGLDPMGASQIMKLLYDLNK----EGITIIIS-THDVDLVPVYADKV-YVMSDGKIIKEGT 220 (275)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHH----CCCEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999987655554433211 11112122 49999999999999 8889998876654
No 162
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=8.5e-16 Score=143.55 Aligned_cols=173 Identities=16% Similarity=0.125 Sum_probs=107.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~~ 85 (350)
.-..++..|.+|++++|+|+||||||||+++|+|. .+|++|.|.++|..+... .. .|.++..
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~ 90 (279)
T PRK13635 22 ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL-----------LLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNP 90 (279)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEECCcCcHHHHhhheEEEEeCH
Confidence 44788899999999999999999999999999999 689999999999765321 11 1222221
Q ss_pred --CCcceeeeeeccccccccc--CccccchHHHHHHHHH-----------------HHHHHHhhc-CCCceeeecCCCCC
Q 018809 86 --VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVD-----------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (350)
Q Consensus 86 --~~~~l~~~D~~g~~~~~~~--~~~~~~~~l~~l~~~d-----------------~~l~vv~a~-~~~~vl~ld~~~eP 143 (350)
.....++.|+..+...... .......+...+...+ .-+.+++++ .+|+++++| ||
T Consensus 91 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---EP 167 (279)
T PRK13635 91 DNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILD---EA 167 (279)
T ss_pred HHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CC
Confidence 1222345554433211000 0000000111111111 015677777 899999999 99
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 144 ~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++++|......+...+..+.+. ....+... +|+...+. .|+++ .+|.+|+++..++
T Consensus 168 t~gLD~~~~~~l~~~l~~l~~~---~~~tiliv-sH~~~~~~-~~d~i-~~l~~G~i~~~g~ 223 (279)
T PRK13635 168 TSMLDPRGRREVLETVRQLKEQ---KGITVLSI-THDLDEAA-QADRV-IVMNKGEILEEGT 223 (279)
T ss_pred cccCCHHHHHHHHHHHHHHHHc---CCCEEEEE-ecCHHHHH-cCCEE-EEEECCEEEEECC
Confidence 9999999876555544332211 01111122 49998886 49999 8889998876554
No 163
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.54 E-value=1.7e-15 Score=140.92 Aligned_cols=173 Identities=20% Similarity=0.246 Sum_probs=108.3
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc--------ceEEEeCCcchhH-----HHh--
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN--------EARVNIPDERFEW-----LCQ-- 78 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~--------~G~i~~~~~~l~~-----l~~-- 78 (350)
-.+++.++.+|++++|+|+||||||||+++|+|. .+|. +|.|.++|..+.. ...
T Consensus 17 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~-----------~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (272)
T PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGD-----------LTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLR 85 (272)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCcccccccCCceEEEECCEEcccCCHHHHHhhc
Confidence 3678899999999999999999999999999998 4666 8999999875432 111
Q ss_pred hccCCC-CCCcceeeeeeccccccccc---C---c---cccchHHHHHHHHH--------------HHHHHHhhcC----
Q 018809 79 LFKPKS-AVPAFLEIHDIAGLVRGAHE---G---Q---GLGNSFLSHIRAVD--------------GIFHVLRAFE---- 130 (350)
Q Consensus 79 ~~~~~~-~~~~~l~~~D~~g~~~~~~~---~---~---~~~~~~l~~l~~~d--------------~~l~vv~a~~---- 130 (350)
.|.++. .....+++.|+..+...... + . ......++.+...+ .-+.+++++.
T Consensus 86 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~ 165 (272)
T PRK13547 86 AVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWP 165 (272)
T ss_pred EEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 233332 11223455555433211000 0 0 00011111111111 1155677774
Q ss_pred ------CCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 131 ------DPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 131 ------~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
+|+++++| ||++++|....+.+...+..+.+. ....+... +|+...+..+||++ .+|.+|+++..+
T Consensus 166 ~~~~~~~p~lllLD---EPt~~LD~~~~~~l~~~l~~~~~~---~~~tviii-sH~~~~~~~~~d~i-~~l~~G~i~~~g 237 (272)
T PRK13547 166 PHDAAQPPRYLLLD---EPTAALDLAHQHRLLDTVRRLARD---WNLGVLAI-VHDPNLAARHADRI-AMLADGAIVAHG 237 (272)
T ss_pred ccccCCCCCEEEEc---CccccCCHHHHHHHHHHHHHHHHh---cCCEEEEE-ECCHHHHHHhCCEE-EEEECCeEEEec
Confidence 89999999 999999999976665554433221 11122122 49999999999999 889999887655
Q ss_pred C
Q 018809 205 D 205 (350)
Q Consensus 205 ~ 205 (350)
+
T Consensus 238 ~ 238 (272)
T PRK13547 238 A 238 (272)
T ss_pred C
Confidence 4
No 164
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.54 E-value=2.3e-15 Score=136.65 Aligned_cols=172 Identities=16% Similarity=0.187 Sum_probs=103.5
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC----cceEEEeCCcchhHHH-----hhccCCCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP----NEARVNIPDERFEWLC-----QLFKPKSA 85 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p----~~G~i~~~~~~l~~l~-----~~~~~~~~ 85 (350)
.++++++.+|++++|+|+||||||||+++|+|. .+| .+|.|.++|.++.... ..|.++..
T Consensus 3 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 71 (230)
T TIGR02770 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGL-----------LPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNP 71 (230)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCccCccccEEEECCEechhhhhhhheeEEEecCc
Confidence 357889999999999999999999999999999 466 8999999997653221 11222221
Q ss_pred ---CCcceeeeeeccccc---cc-cc-CccccchHHHHHHH-----------------HHHHHHHHhhc-CCCceeeecC
Q 018809 86 ---VPAFLEIHDIAGLVR---GA-HE-GQGLGNSFLSHIRA-----------------VDGIFHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 86 ---~~~~l~~~D~~g~~~---~~-~~-~~~~~~~~l~~l~~-----------------~d~~l~vv~a~-~~~~vl~ld~ 139 (350)
++..+++.+...... .. .. .......+++.+.. -..-+.+++++ .+|+++++|
T Consensus 72 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD- 150 (230)
T TIGR02770 72 RTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD- 150 (230)
T ss_pred hhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc-
Confidence 111122222111100 00 00 00000011111100 01115577777 899999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+.+ +....+... +|+...+..++|++ .+|.+|+++..++
T Consensus 151 --EPt~~LD~~~~~~l~~~l~~~~~---~~~~tiii~-sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 209 (230)
T TIGR02770 151 --EPTTDLDVVNQARVLKLLRELRQ---LFGTGILLI-THDLGVVARIADEV-AVMDDGRIVERGT 209 (230)
T ss_pred --CCccccCHHHHHHHHHHHHHHHH---hcCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999887655554433211 111122122 49999999999999 8889998876543
No 165
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.54 E-value=2.7e-15 Score=130.64 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=88.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
.++++|++++|+|+||||||||+++|+|. .+|++|.|.++|..+.+. ++ .+.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~-----~q-----------~~~- 71 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQ-----------LIPNGDNDEWDGITPVYK-----PQ-----------YID- 71 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcC-----------CCCCCcEEEECCEEEEEE-----cc-----------cCC-
Confidence 57899999999999999999999999999 689999999987532110 00 000
Q ss_pred ccccccCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 018809 99 VRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN 177 (350)
Q Consensus 99 ~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~ 177 (350)
.+.+++ +++. +++++ .+|+++++| ||++++|....+.+...+..+.+ +-...+.. .
T Consensus 72 -------LSgGq~--qrv~-------laral~~~p~lllLD---EPts~LD~~~~~~l~~~l~~~~~---~~~~tiii-v 128 (177)
T cd03222 72 -------LSGGEL--QRVA-------IAAALLRNATFYLFD---EPSAYLDIEQRLNAARAIRRLSE---EGKKTALV-V 128 (177)
T ss_pred -------CCHHHH--HHHH-------HHHHHhcCCCEEEEE---CCcccCCHHHHHHHHHHHHHHHH---cCCCEEEE-E
Confidence 122222 3333 44444 599999999 99999999987655554433211 10011112 2
Q ss_pred cccHHHHHHHHHHHHHHhhcCCc
Q 018809 178 DKQLKIEHELCQRVKAWLQDGKD 200 (350)
Q Consensus 178 ~h~~~~~~~l~~~i~~~L~~g~~ 200 (350)
+|+...+..+|+++ ..|.++..
T Consensus 129 sH~~~~~~~~~d~i-~~l~~~~~ 150 (177)
T cd03222 129 EHDLAVLDYLSDRI-HVFEGEPG 150 (177)
T ss_pred ECCHHHHHHhCCEE-EEEcCCCc
Confidence 49999999999988 66766543
No 166
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.54 E-value=5.3e-15 Score=149.12 Aligned_cols=172 Identities=16% Similarity=0.196 Sum_probs=109.2
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH------HHh--hccCCC-
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LCQ--LFKPKS- 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~------l~~--~~~~~~- 84 (350)
-.+++.++.+|+++||+||||||||||+++|+|. .+|++|.|.++|.++.. ... .|.++.
T Consensus 20 l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 88 (501)
T PRK10762 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI-----------YTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQEL 88 (501)
T ss_pred eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcch
Confidence 3678899999999999999999999999999999 68999999999865421 011 122221
Q ss_pred CCCcceeeeeeccccccccc--C-cc------ccchHHHHHHHH--------------HHHHHHHhhc-CCCceeeecCC
Q 018809 85 AVPAFLEIHDIAGLVRGAHE--G-QG------LGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~--~-~~------~~~~~l~~l~~~--------------d~~l~vv~a~-~~~~vl~ld~~ 140 (350)
.....+++.|...+...... + .. ....+++.+... ..-+.+++++ .+|+++++|
T Consensus 89 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD-- 166 (501)
T PRK10762 89 NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMD-- 166 (501)
T ss_pred hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 22223455554433211000 0 00 000011111000 0115677777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+.+ ....+... +|+...+..+||++ .+|++|+++..++
T Consensus 167 -EPt~~LD~~~~~~l~~~l~~l~~----~~~tvii~-sHd~~~~~~~~d~i-~~l~~G~i~~~~~ 224 (501)
T PRK10762 167 -EPTDALTDTETESLFRVIRELKS----QGRGIVYI-SHRLKEIFEICDDV-TVFRDGQFIAERE 224 (501)
T ss_pred -CCcCCCCHHHHHHHHHHHHHHHH----CCCEEEEE-eCCHHHHHHhCCEE-EEEeCCEEEEecC
Confidence 99999999997666655443321 11122122 49999999999999 8899998875543
No 167
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.54 E-value=5.5e-15 Score=128.89 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=96.9
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh------hccCCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ------LFKPKSAV 86 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~------~~~~~~~~ 86 (350)
.-.+++.++++|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++..... .|.++...
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~ 85 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD-----------LKPQQGEITLDGVPVSDLEKALSSLISVLNQRPY 85 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCe
Confidence 34578899999999999999999999999999999 58899999999976643211 12222111
Q ss_pred CcceeeeeecccccccccCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 018809 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERR 165 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~ 165 (350)
....++.|+. ....+.+++ +++ .+++++ .+|+++++| ||++++|....+.+...+..+.
T Consensus 86 ~~~~tv~~~i------~~~LS~G~~--qrv-------~laral~~~p~~lllD---EP~~~LD~~~~~~l~~~l~~~~-- 145 (178)
T cd03247 86 LFDTTLRNNL------GRRFSGGER--QRL-------ALARILLQDAPIVLLD---EPTVGLDPITERQLLSLIFEVL-- 145 (178)
T ss_pred eecccHHHhh------cccCCHHHH--HHH-------HHHHHHhcCCCEEEEE---CCcccCCHHHHHHHHHHHHHHc--
Confidence 1011222221 001111222 333 344544 599999999 9999999988766555543321
Q ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc
Q 018809 166 IEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (350)
Q Consensus 166 ~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~ 201 (350)
+ ...+... +|+...+. .++++ ..|.+|++.
T Consensus 146 --~-~~tii~~-sh~~~~~~-~~d~~-~~l~~g~i~ 175 (178)
T cd03247 146 --K-DKTLIWI-THHLTGIE-HMDKI-LFLENGKII 175 (178)
T ss_pred --C-CCEEEEE-ecCHHHHH-hCCEE-EEEECCEEE
Confidence 1 1111122 48888775 58888 777777654
No 168
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.54 E-value=1.5e-15 Score=153.40 Aligned_cols=173 Identities=17% Similarity=0.211 Sum_probs=109.1
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh---hccCCC-
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ---LFKPKS- 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~---~~~~~~- 84 (350)
-.+++.++.+|+++||+||||||||||+++|+|. ..|.+|.|.++|..+... .. .|.++.
T Consensus 27 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 95 (510)
T PRK15439 27 LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI-----------VPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEP 95 (510)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHHHhCCEEEEeccC
Confidence 4688999999999999999999999999999999 689999999998654211 10 122222
Q ss_pred CCCcceeeeeecccccccccC-ccccchHHHHHHH--------------HHHHHHHHhhc-CCCceeeecCCCCCCchhH
Q 018809 85 AVPAFLEIHDIAGLVRGAHEG-QGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~-~~~~~~~l~~l~~--------------~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (350)
.....+++.|...+....... ......++..+.. -..-+.+++++ .+|+++++| ||++++|
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLD---EPt~~LD 172 (510)
T PRK15439 96 LLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILD---EPTASLT 172 (510)
T ss_pred ccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCCCCCC
Confidence 222234444443332110000 0000000111000 01115567777 799999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 149 ~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
....+.+...+..+.+ ....+... +|+...+..+||++ .+|.+|+++..++.
T Consensus 173 ~~~~~~l~~~l~~~~~----~g~tiiiv-tHd~~~~~~~~d~i-~~l~~G~i~~~g~~ 224 (510)
T PRK15439 173 PAETERLFSRIRELLA----QGVGIVFI-SHKLPEIRQLADRI-SVMRDGTIALSGKT 224 (510)
T ss_pred HHHHHHHHHHHHHHHH----CCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEecCh
Confidence 9987666655443321 11122122 49999999999999 88999998766543
No 169
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=8.6e-16 Score=143.56 Aligned_cols=173 Identities=14% Similarity=0.091 Sum_probs=108.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH---------HHh--hcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW---------LCQ--LFK 81 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~---------l~~--~~~ 81 (350)
.-.+++.++++|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++.. +.. .|.
T Consensus 22 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~ 90 (280)
T PRK13649 22 ALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL-----------HVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLV 90 (280)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEccccccccCHHHHHhheEEE
Confidence 45778899999999999999999999999999999 68999999999875432 111 122
Q ss_pred CCCC--CCcceeeeeeccccccccc--Ccc---ccchHHHHHHH---------------HHHHHHHHhhc-CCCceeeec
Q 018809 82 PKSA--VPAFLEIHDIAGLVRGAHE--GQG---LGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 82 ~~~~--~~~~l~~~D~~g~~~~~~~--~~~---~~~~~l~~l~~---------------~d~~l~vv~a~-~~~~vl~ld 138 (350)
++.. .....++.|+..+...... ... ....+++.+.. ...-+.+++++ .+|+++++|
T Consensus 91 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 170 (280)
T PRK13649 91 FQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLD 170 (280)
T ss_pred eeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 3321 1111244444322110000 000 00011111100 00115577777 899999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+ ....+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 171 ---EPt~~LD~~~~~~l~~~l~~~~~----~~~tiiiv-sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 228 (280)
T PRK13649 171 ---EPTAGLDPKGRKELMTLFKKLHQ----SGMTIVLV-THLMDDVANYADFV-YVLEKGKLVLSGK 228 (280)
T ss_pred ---CCcccCCHHHHHHHHHHHHHHHH----CCCEEEEE-eccHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999987666555433211 11122122 49999999999999 8889998876544
No 170
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.53 E-value=2.9e-15 Score=136.61 Aligned_cols=174 Identities=16% Similarity=0.222 Sum_probs=107.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----hhccCCC-CC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----QLFKPKS-AV 86 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~~~~~~~-~~ 86 (350)
.=.+++..+.+|+++||+|+||||||||+++|+|. .+|..|.|.++|.++.... ..|.++. ..
T Consensus 15 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~ 83 (237)
T TIGR00968 15 ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL-----------EQPDSGRIRLNGQDATRVHARDRKIGFVFQHYAL 83 (237)
T ss_pred eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEEcCcCChhhcCEEEEecChhh
Confidence 33677889999999999999999999999999999 5889999999887643211 0122222 11
Q ss_pred Ccceeeeeeccccccccc--Ccccc---chHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCch
Q 018809 87 PAFLEIHDIAGLVRGAHE--GQGLG---NSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~--~~~~~---~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ 146 (350)
....++.++..+...... ..... ...++.++..+ .-+.+++++ .+|+++++| ||+++
T Consensus 84 ~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD---EP~~~ 160 (237)
T TIGR00968 84 FKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLD---EPFGA 160 (237)
T ss_pred ccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCccc
Confidence 112333333322111000 00000 01111111110 115677777 899999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 147 ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+|....+.+...+..+.+ +....+... +|+...+..+||++ ..|.+|+....++
T Consensus 161 LD~~~~~~~~~~l~~~~~---~~~~tvli~-sH~~~~~~~~~d~i-~~l~~g~i~~~~~ 214 (237)
T TIGR00968 161 LDAKVRKELRSWLRKLHD---EVHVTTVFV-THDQEEAMEVADRI-VVMSNGKIEQIGS 214 (237)
T ss_pred CCHHHHHHHHHHHHHHHH---hcCCEEEEE-eCCHHHHHhhcCEE-EEEECCEEEEecC
Confidence 999987666655433211 111122122 49999999999999 8889998765443
No 171
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.53 E-value=2.8e-15 Score=136.23 Aligned_cols=170 Identities=19% Similarity=0.246 Sum_probs=105.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~~ 85 (350)
.-.+++.++++|++++|+|+||||||||+++|+|. .+|.+|.|.++|..+... .. .|.++..
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (234)
T cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRF-----------YDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDV 85 (234)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------ccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCC
Confidence 34678899999999999999999999999999999 579999999998765321 11 1222221
Q ss_pred CCcceeeeeecccccccccCccc--------cchHHHHH---------------H-HHHHHHHHHhhc-CCCceeeecCC
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGL--------GNSFLSHI---------------R-AVDGIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~--------~~~~l~~l---------------~-~~d~~l~vv~a~-~~~~vl~ld~~ 140 (350)
.....++.|+..+.......... ...++..+ . ....-+.+++++ .+|+++++|
T Consensus 86 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD-- 163 (234)
T cd03251 86 FLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILD-- 163 (234)
T ss_pred eeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 11113444433322111000000 00000000 0 001125577777 799999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
||++++|....+.+...+..+. + ...+... +|+...+.. |+++ ..|.+|+++..+
T Consensus 164 -EP~~~LD~~~~~~l~~~l~~~~----~-~~tii~~-sh~~~~~~~-~d~v-~~l~~G~i~~~~ 218 (234)
T cd03251 164 -EATSALDTESERLVQAALERLM----K-NRTTFVI-AHRLSTIEN-ADRI-VVLEDGKIVERG 218 (234)
T ss_pred -CccccCCHHHHHHHHHHHHHhc----C-CCEEEEE-ecCHHHHhh-CCEE-EEecCCeEeeeC
Confidence 9999999999766655543321 1 1122122 499988865 9999 888999876544
No 172
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2.9e-15 Score=137.60 Aligned_cols=177 Identities=14% Similarity=0.151 Sum_probs=109.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCC-
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKS- 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~- 84 (350)
.-.++++++++|++++|+|+||||||||+++|+|.... +| -.|.+|.|.++|.++... .. .|.++.
T Consensus 18 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~---~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 91 (250)
T PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIEL---YP---EARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIP 91 (250)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCC---CC---CCCCceEEEECCEECCcCCHHHHhccEEEEeccC
Confidence 44678899999999999999999999999999998310 00 014799999998765321 11 133332
Q ss_pred CCCcceeeeeeccccccccc---C-ccccchHHHHHHHHH---------------------HHHHHHhhc-CCCceeeec
Q 018809 85 AVPAFLEIHDIAGLVRGAHE---G-QGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~---~-~~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~vl~ld 138 (350)
.....+++.|+..+...... . ........+.++..+ .-+.+++++ .+|+++++|
T Consensus 92 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD 171 (250)
T PRK14247 92 NPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLAD 171 (250)
T ss_pred ccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 22334555555533211000 0 000011111111111 115677777 799999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+. + ...+... +|+...+..+|+++ .+|.+|++...++
T Consensus 172 ---EP~~~LD~~~~~~l~~~l~~~~----~-~~tiii~-sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 228 (250)
T PRK14247 172 ---EPTANLDPENTAKIESLFLELK----K-DMTIVLV-THFPQQAARISDYV-AFLYKGQIVEWGP 228 (250)
T ss_pred ---CCCccCCHHHHHHHHHHHHHHh----c-CCEEEEE-eCCHHHHHHhcCEE-EEEECCeEEEECC
Confidence 9999999998766555543321 1 1122122 49999999999999 8889998765544
No 173
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.53 E-value=1.3e-14 Score=142.13 Aligned_cols=89 Identities=40% Similarity=0.664 Sum_probs=80.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~~ 104 (350)
.-|||||.||||||||+|+|++.+..+++|||||+.|+.|.+.+++. ..+.++|+||+..+++.
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~----------------~~~~laD~PGliega~~ 222 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG----------------RSFVMADIPGLIEGASE 222 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC----------------ceEEEEECCCCcccccc
Confidence 37999999999999999999999988899999999999999988631 24899999999988888
Q ss_pred CccccchHHHHHHHHHHHHHHHhhc
Q 018809 105 GQGLGNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 105 ~~~~~~~~l~~l~~~d~~l~vv~a~ 129 (350)
+.+++..|+.+++.++++++|+|+.
T Consensus 223 ~~gLg~~fLrhier~~llI~VID~s 247 (424)
T PRK12297 223 GVGLGHQFLRHIERTRVIVHVIDMS 247 (424)
T ss_pred cchHHHHHHHHHhhCCEEEEEEeCC
Confidence 8888999999999999999999985
No 174
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=4.4e-15 Score=138.16 Aligned_cols=173 Identities=18% Similarity=0.192 Sum_probs=105.9
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~ 83 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++.. ... .|.++
T Consensus 16 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 84 (271)
T PRK13638 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL-----------LRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQ 84 (271)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCccEEEECCEEcccccCCHHHHHhheEEEee
Confidence 44678899999999999999999999999999999 68999999999876521 111 12222
Q ss_pred CCC--Ccceeeeeeccccccccc-C-ccc---cchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCC
Q 018809 84 SAV--PAFLEIHDIAGLVRGAHE-G-QGL---GNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 84 ~~~--~~~l~~~D~~g~~~~~~~-~-~~~---~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~ 141 (350)
... ....++.++..+...... . ... ....++.+...+. -+.+++++ .+|+++++|
T Consensus 85 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLD--- 161 (271)
T PRK13638 85 DPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLD--- 161 (271)
T ss_pred ChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEe---
Confidence 210 111122222211100000 0 000 0011111111110 15577777 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+.+ ....+... +|+...+..+||++ ..|.+|+++..++
T Consensus 162 EPt~~LD~~~~~~l~~~l~~~~~----~g~tii~v-tH~~~~~~~~~d~i-~~l~~G~i~~~g~ 219 (271)
T PRK13638 162 EPTAGLDPAGRTQMIAIIRRIVA----QGNHVIIS-SHDIDLIYEISDAV-YVLRQGQILTHGA 219 (271)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH----CCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999887655554433211 11122122 49999999999999 8889998876654
No 175
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=1.4e-15 Score=143.82 Aligned_cols=173 Identities=16% Similarity=0.139 Sum_probs=107.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchh------------------
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE------------------ 74 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~------------------ 74 (350)
.=+.++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|....
T Consensus 22 ~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 90 (305)
T PRK13651 22 ALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL-----------LLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQ 90 (305)
T ss_pred ceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEEeceecccccccccccccccccccc
Confidence 44678999999999999999999999999999999 6889999999764321
Q ss_pred -----------HHHh--hccCCC---CCCcceeeeeeccccccccc-C-ccccchHHHHHHHHH----------------
Q 018809 75 -----------WLCQ--LFKPKS---AVPAFLEIHDIAGLVRGAHE-G-QGLGNSFLSHIRAVD---------------- 120 (350)
Q Consensus 75 -----------~l~~--~~~~~~---~~~~~l~~~D~~g~~~~~~~-~-~~~~~~~l~~l~~~d---------------- 120 (350)
.+.. .|.++. .+. ..++.|...+...... . .....+..+.+...+
T Consensus 91 ~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG 169 (305)
T PRK13651 91 KTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGG 169 (305)
T ss_pred cccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHH
Confidence 1111 122221 111 1244444433211000 0 000001111111111
Q ss_pred --HHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhc
Q 018809 121 --GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD 197 (350)
Q Consensus 121 --~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~ 197 (350)
.-+.+++++ .+|+++++| ||++++|......++..+..+. +....+... +|+...+..+||++ .+|++
T Consensus 170 qkqrvalA~aL~~~P~lLlLD---EPt~~LD~~~~~~l~~~l~~l~----~~g~tiiiv-tHd~~~~~~~adrv-~vl~~ 240 (305)
T PRK13651 170 QKRRVALAGILAMEPDFLVFD---EPTAGLDPQGVKEILEIFDNLN----KQGKTIILV-THDLDNVLEWTKRT-IFFKD 240 (305)
T ss_pred HHHHHHHHHHHHhCCCEEEEe---CCCCCCCHHHHHHHHHHHHHHH----HCCCEEEEE-eeCHHHHHHhCCEE-EEEEC
Confidence 115577777 799999999 9999999988765555443321 111122122 49999999999999 88899
Q ss_pred CCccccCCC
Q 018809 198 GKDVRLGDW 206 (350)
Q Consensus 198 g~~~~~~~~ 206 (350)
|+++..++.
T Consensus 241 G~i~~~g~~ 249 (305)
T PRK13651 241 GKIIKDGDT 249 (305)
T ss_pred CEEEEECCH
Confidence 998766553
No 176
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.53 E-value=2.9e-15 Score=137.89 Aligned_cols=177 Identities=16% Similarity=0.198 Sum_probs=107.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~ 83 (350)
.=.++++++.+|++++|+|+||||||||+++|+|.... .| ..|++|.|.++|+++.. +.. .|.++
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~---~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 94 (253)
T PRK14242 21 ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDL---IP---GARVEGEILLDGENIYDPHVDVVELRRRVGMVFQ 94 (253)
T ss_pred eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhccc---CC---CCCCceEEEECCEEccccccCHHHHhhcEEEEec
Confidence 34788899999999999999999999999999998310 00 01579999999876531 111 12232
Q ss_pred CCCCcceeeeeeccccccccc--C-ccccchHHHHHHHHH---------------------HHHHHHhhc-CCCceeeec
Q 018809 84 SAVPAFLEIHDIAGLVRGAHE--G-QGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 84 ~~~~~~l~~~D~~g~~~~~~~--~-~~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~vl~ld 138 (350)
.......++.|+..+...... . .....+....++..+ .-+.+++++ .+|+++++|
T Consensus 95 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllD 174 (253)
T PRK14242 95 KPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMD 174 (253)
T ss_pred CCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 211111244444332210000 0 000001111111111 115577777 899999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+ ...+... +|+...+..+||++ .+|.+|++...++
T Consensus 175 ---EPt~~LD~~~~~~l~~~l~~~~~-----~~tvii~-tH~~~~~~~~~d~v-~~l~~G~i~~~g~ 231 (253)
T PRK14242 175 ---EPASALDPIATQKIEELIHELKA-----RYTIIIV-THNMQQAARVSDVT-AFFYMGKLIEVGP 231 (253)
T ss_pred ---CCcccCCHHHHHHHHHHHHHHhc-----CCeEEEE-EecHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999987666555443311 1122222 49999999999999 8889998775543
No 177
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=3.2e-15 Score=137.57 Aligned_cols=172 Identities=16% Similarity=0.178 Sum_probs=107.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-----cceEEEeCCcchh--H-----HHh--
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFE--W-----LCQ-- 78 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p-----~~G~i~~~~~~l~--~-----l~~-- 78 (350)
.=.++++++.+|++++|+|+||||||||+++|+|. .+| .+|.|.++|+++. . +..
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 87 (253)
T PRK14267 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL-----------LELNEEARVEGEVRLFGRNIYSPDVDPIEVRREV 87 (253)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCcccCCCCceEEEECCEEccccccChHHHhhce
Confidence 44778899999999999999999999999999999 344 5999999987653 1 111
Q ss_pred hccCCC-CCCcceeeeeeccccccccc----CccccchHHHHHHHHH---------------------HHHHHHhhc-CC
Q 018809 79 LFKPKS-AVPAFLEIHDIAGLVRGAHE----GQGLGNSFLSHIRAVD---------------------GIFHVLRAF-ED 131 (350)
Q Consensus 79 ~~~~~~-~~~~~l~~~D~~g~~~~~~~----~~~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~ 131 (350)
.|.++. .....+++.++..+...... .........+.++..+ .-+.+++++ .+
T Consensus 88 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 167 (253)
T PRK14267 88 GMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMK 167 (253)
T ss_pred eEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcC
Confidence 122222 22223445554432211000 0000001111111111 115677877 89
Q ss_pred CceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 132 PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 132 ~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|+++++| ||++++|....+.+...+..+.+ ...+... +|+...+..+||++ .+|.+|++...++
T Consensus 168 p~llllD---EP~~~LD~~~~~~l~~~l~~~~~-----~~tiii~-sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 231 (253)
T PRK14267 168 PKILLMD---EPTANIDPVGTAKIEELLFELKK-----EYTIVLV-THSPAQAARVSDYV-AFLYLGKLIEVGP 231 (253)
T ss_pred CCEEEEc---CCCccCCHHHHHHHHHHHHHHhh-----CCEEEEE-ECCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 9999999 99999999887665555443311 1122122 49999999999999 8899998876544
No 178
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=1.1e-15 Score=143.37 Aligned_cols=174 Identities=15% Similarity=0.115 Sum_probs=107.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchh----------HHHh--hc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE----------WLCQ--LF 80 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~----------~l~~--~~ 80 (350)
.-.++++++.+|+++||+|+||||||||+++|+|. .+|.+|.|.++|..+. .+.. .|
T Consensus 26 il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~ 94 (289)
T PRK13645 26 ALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL-----------IISETGQTIVGDYAIPANLKKIKEVKRLRKEIGL 94 (289)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEEccccccccccHHHHhccEEE
Confidence 34678899999999999999999999999999999 5889999999886542 0111 12
Q ss_pred cCCCC--CCcceeeeeeccccccccc--Ccc---ccchHHHHHHH-HHH--------------HHHHHhhc-CCCceeee
Q 018809 81 KPKSA--VPAFLEIHDIAGLVRGAHE--GQG---LGNSFLSHIRA-VDG--------------IFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 81 ~~~~~--~~~~l~~~D~~g~~~~~~~--~~~---~~~~~l~~l~~-~d~--------------~l~vv~a~-~~~~vl~l 137 (350)
.++.. .....++.++..+...... ... .....++.+.. .+. -+.+++++ .+|+++++
T Consensus 95 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlL 174 (289)
T PRK13645 95 VFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVL 174 (289)
T ss_pred EEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 22221 0111233333222110000 000 00011111111 000 15577777 89999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++++|....+.+...+..+.+. ....+... +|+...+..+||++ .+|++|+++..++
T Consensus 175 D---EPt~~LD~~~~~~l~~~l~~~~~~---~~~tiiii-sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 234 (289)
T PRK13645 175 D---EPTGGLDPKGEEDFINLFERLNKE---YKKRIIMV-THNMDQVLRIADEV-IVMHEGKVISIGS 234 (289)
T ss_pred e---CCcccCCHHHHHHHHHHHHHHHHh---cCCEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9 999999999976666554433221 11122122 49999999999999 8899998876554
No 179
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=3.2e-15 Score=136.17 Aligned_cols=173 Identities=16% Similarity=0.280 Sum_probs=106.9
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH----h-hccCCC-CCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----Q-LFKPKS-AVP 87 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~----~-~~~~~~-~~~ 87 (350)
-.+++.++.+|++++|+|+||||||||+++|+|. .+|+.|.+.++|.++.... . .+.++. ...
T Consensus 15 l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~-----------~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~ 83 (235)
T cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF-----------IKPDSGKILLNGKDITNLPPEKRDISYVPQNYALF 83 (235)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCEEcCcCChhHcCEEEEeecCccC
Confidence 4677889999999999999999999999999999 6899999999987643211 0 111211 122
Q ss_pred cceeeeeeccccccccc--CccccchHHHHHHHH---H--------------HHHHHHhhc-CCCceeeecCCCCCCchh
Q 018809 88 AFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAV---D--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~~--~~~~~~~~l~~l~~~---d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~l 147 (350)
..+++.|...+...... .......+.+.+... . .-+.+++++ .+|+++++| ||++++
T Consensus 84 ~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EPt~gL 160 (235)
T cd03299 84 PHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLD---EPFSAL 160 (235)
T ss_pred CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEC---CCcccC
Confidence 22344444332211000 000000011111110 0 115577777 899999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 148 d~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|....+.+...+..+.. +....+... +|+...+.++|+++ ..|.+|+++..++
T Consensus 161 D~~~~~~l~~~l~~~~~---~~~~tili~-tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 213 (235)
T cd03299 161 DVRTKEKLREELKKIRK---EFGVTVLHV-THDFEEAWALADKV-AIMLNGKLIQVGK 213 (235)
T ss_pred CHHHHHHHHHHHHHHHH---hcCCEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 99997665555433211 111122122 49999999999999 8888898775543
No 180
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.52 E-value=5.9e-15 Score=132.50 Aligned_cols=167 Identities=16% Similarity=0.138 Sum_probs=101.0
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEE-eCCcchhHHHhhccCCCCCCcceeee
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-IPDERFEWLCQLFKPKSAVPAFLEIH 93 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~-~~~~~l~~l~~~~~~~~~~~~~l~~~ 93 (350)
++++..+.+|+++||+||||||||||+++|+|. .+|.+|.|. +++..+. +. ....++..+++.
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-----------~~~~sG~i~~~~~~~~~-~~----~~~~l~~~ltv~ 67 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGL-----------DAPDEGDFIGLRGDALP-LG----ANSFILPGLTGE 67 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------ccCCCCCEEEecCceec-cc----cccccCCcCcHH
Confidence 467889999999999999999999999999999 578999986 6664321 00 011112223333
Q ss_pred eeccccccccc--CccccchHHHH--HH--------H----HHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHH
Q 018809 94 DIAGLVRGAHE--GQGLGNSFLSH--IR--------A----VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRL 156 (350)
Q Consensus 94 D~~g~~~~~~~--~~~~~~~~l~~--l~--------~----~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~ 156 (350)
++..+....+. ........... +. . ...-+.+++++ .+|+++++| ||+..+|......+.
T Consensus 68 enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllD---EP~~~lD~~~~~~~~ 144 (213)
T PRK15177 68 ENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIAD---GKLYTGDNATQLRMQ 144 (213)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEEC---CCCccCCHHHHHHHH
Confidence 33322111000 00000000000 00 0 00114567777 799999999 999999888765544
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 157 KDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 157 ~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
..+. +.+.. +.+.. .+|+...+..+||++ .+|.+|++++.+++.
T Consensus 145 ~~l~---~~~~~--~~ii~-vsH~~~~~~~~~d~i-~~l~~G~i~~~~~~~ 188 (213)
T PRK15177 145 AALA---CQLQQ--KGLIV-LTHNPRLIKEHCHAF-GVLLHGKITMCEDLA 188 (213)
T ss_pred HHHH---HHhhC--CcEEE-EECCHHHHHHhcCee-EEEECCeEEEeCCHH
Confidence 4331 11111 11212 249999999999999 889999988766543
No 181
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.52 E-value=5.4e-15 Score=135.81 Aligned_cols=171 Identities=16% Similarity=0.227 Sum_probs=105.5
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh--hccCCC-C
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKS-A 85 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~--~~~~~~-~ 85 (350)
-.+++.++.+|++++|+|+||||||||+++|+|. . |.+|.|.++|+.+.. +.. .|.++. .
T Consensus 12 l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl-----------~-~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~ 79 (248)
T PRK03695 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGL-----------L-PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQT 79 (248)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------C-CCCeEEEECCEecCcCCHHHHhhheEEecccCc
Confidence 3678899999999999999999999999999998 3 348999999875421 111 232332 1
Q ss_pred CCcceeeeeecccccccccCc----cccchHHHHHHHHHH--------------HHHHHhhc-C-------CCceeeecC
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQ----GLGNSFLSHIRAVDG--------------IFHVLRAF-E-------DPDIIHVDD 139 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~----~~~~~~l~~l~~~d~--------------~l~vv~a~-~-------~~~vl~ld~ 139 (350)
....+++.++..+........ .....+++.+...+. -+.+++++ . +|+++++|
T Consensus 80 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD- 158 (248)
T PRK03695 80 PPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD- 158 (248)
T ss_pred cCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc-
Confidence 222344444433321110000 000111111111111 15577777 3 56999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+.+ ....+... +|+...+..+||++ .+|.+|+++..++
T Consensus 159 --EPt~~LD~~~~~~l~~~L~~~~~----~~~tvi~~-sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 216 (248)
T PRK03695 159 --EPMNSLDVAQQAALDRLLSELCQ----QGIAVVMS-SHDLNHTLRHADRV-WLLKQGKLLASGR 216 (248)
T ss_pred --CCcccCCHHHHHHHHHHHHHHHh----CCCEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 99999999987655554433211 11122122 49999999999999 8899999876554
No 182
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.52 E-value=3.9e-15 Score=137.50 Aligned_cols=174 Identities=20% Similarity=0.279 Sum_probs=105.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcc-----hhHH---------H-
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-----FEWL---------C- 77 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~-----l~~l---------~- 77 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.+ +... .
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~ 89 (258)
T PRK11701 21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR-----------LAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRT 89 (258)
T ss_pred eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCccccccccccCCHHHHHHHhhc
Confidence 34678889999999999999999999999999999 68999999999875 3211 0
Q ss_pred -hhccCCCC---CCcceeeeeecccc---ccc-ccC--ccccchHHHHHHHH-H--------------HHHHHHhhc-CC
Q 018809 78 -QLFKPKSA---VPAFLEIHDIAGLV---RGA-HEG--QGLGNSFLSHIRAV-D--------------GIFHVLRAF-ED 131 (350)
Q Consensus 78 -~~~~~~~~---~~~~l~~~D~~g~~---~~~-~~~--~~~~~~~l~~l~~~-d--------------~~l~vv~a~-~~ 131 (350)
..|.++.. ....+++.++.... ... ... ......+++.+... + .-+.+++++ .+
T Consensus 90 ~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~ 169 (258)
T PRK11701 90 EWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTH 169 (258)
T ss_pred ceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcC
Confidence 01222221 11111212111100 000 000 00000111111110 0 015577777 89
Q ss_pred CceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 132 PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 132 ~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|+++++| ||++++|....+.+...+..+.+ +....+... +|+...+..+|+++ .+|++|+++..++
T Consensus 170 p~llllD---EPt~~LD~~~~~~l~~~l~~~~~---~~~~tii~i-sH~~~~~~~~~d~i-~~l~~g~i~~~~~ 235 (258)
T PRK11701 170 PRLVFMD---EPTGGLDVSVQARLLDLLRGLVR---ELGLAVVIV-THDLAVARLLAHRL-LVMKQGRVVESGL 235 (258)
T ss_pred CCEEEEc---CCcccCCHHHHHHHHHHHHHHHH---hcCcEEEEE-eCCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 9999999 99999999887665555433221 111122122 49999999999999 8889998876543
No 183
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.52 E-value=4.3e-15 Score=134.31 Aligned_cols=165 Identities=19% Similarity=0.253 Sum_probs=99.7
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh--hccCCCC-CC--cceeeee
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--LFKPKSA-VP--AFLEIHD 94 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~--~~~~~~~-~~--~~l~~~D 94 (350)
++++|+++||+|+||||||||+++|+|. .+|++|.|.++|+++..... .|.++.. .. ..+++.|
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~ 70 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGL-----------IPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAH 70 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHH
Confidence 5789999999999999999999999999 58999999999976532211 2222221 10 1123333
Q ss_pred ecccccccc-----cCc-cccchHHHHHHHHH-----------------HHHHHHhhc-CCCceeeecCCCCCCchhHHH
Q 018809 95 IAGLVRGAH-----EGQ-GLGNSFLSHIRAVD-----------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (350)
Q Consensus 95 ~~g~~~~~~-----~~~-~~~~~~l~~l~~~d-----------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~ 150 (350)
+..+..... ... .....+...++..+ .-+.+++++ .+|+++++| ||++++|..
T Consensus 71 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilD---EP~~~LD~~ 147 (223)
T TIGR03771 71 TVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLD---EPFTGLDMP 147 (223)
T ss_pred HHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHH
Confidence 321110000 000 00001111111111 115677777 899999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 151 SAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 151 ~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
..+.+...+..+.+ + ...+... +|+...+..+||++ .++ +|+++..++
T Consensus 148 ~~~~l~~~l~~~~~---~-~~tvii~-sH~~~~~~~~~d~i-~~l-~G~i~~~~~ 195 (223)
T TIGR03771 148 TQELLTELFIELAG---A-GTAILMT-THDLAQAMATCDRV-VLL-NGRVIADGT 195 (223)
T ss_pred HHHHHHHHHHHHHH---c-CCEEEEE-eCCHHHHHHhCCEE-EEE-CCEEEeecC
Confidence 97666555433211 1 1112122 49999999999999 567 688776544
No 184
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=5.8e-15 Score=130.35 Aligned_cols=162 Identities=15% Similarity=0.179 Sum_probs=100.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-HHh--hccCCC-CCCc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-LCQ--LFKPKS-AVPA 88 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-l~~--~~~~~~-~~~~ 88 (350)
.-.++++++.+|++++|+|+||||||||+++|+|... .+|+.|.+.++|+++.. ... .|.++. ....
T Consensus 22 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---------~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~ 92 (192)
T cd03232 22 LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT---------AGVITGEILINGRPLDKNFQRSTGYVEQQDVHSP 92 (192)
T ss_pred eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc---------CCCcceEEEECCEehHHHhhhceEEecccCcccc
Confidence 3467889999999999999999999999999999731 24789999999876531 111 122221 1122
Q ss_pred ceeeeeecccccccccCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 018809 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIE 167 (350)
Q Consensus 89 ~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~ 167 (350)
.+++.|+..+..... ..+.|++ ++ +.+++++ .+|+++++| ||++++|......+...+..+.+
T Consensus 93 ~~tv~~~l~~~~~~~-~LSgGe~--qr-------v~la~al~~~p~vlllD---EP~~~LD~~~~~~l~~~l~~~~~--- 156 (192)
T cd03232 93 NLTVREALRFSALLR-GLSVEQR--KR-------LTIGVELAAKPSILFLD---EPTSGLDSQAAYNIVRFLKKLAD--- 156 (192)
T ss_pred CCcHHHHHHHHHHHh-cCCHHHh--HH-------HHHHHHHhcCCcEEEEe---CCCcCCCHHHHHHHHHHHHHHHH---
Confidence 233334332211000 1111111 22 3455555 699999999 99999999887655554432211
Q ss_pred HHHHHHhhcccccHH-HHHHHHHHHHHHhhc-CCccc
Q 018809 168 DVEKSMKRSNDKQLK-IEHELCQRVKAWLQD-GKDVR 202 (350)
Q Consensus 168 ~~~~~~~~~~~h~~~-~~~~l~~~i~~~L~~-g~~~~ 202 (350)
....+... +|+.. .+...||++ ..|.+ |++++
T Consensus 157 -~~~tiiiv-tH~~~~~~~~~~d~i-~~l~~~g~i~~ 190 (192)
T cd03232 157 -SGQAILCT-IHQPSASIFEKFDRL-LLLKRGGKTVY 190 (192)
T ss_pred -cCCEEEEE-EcCChHHHHhhCCEE-EEEcCCCeEEe
Confidence 11111122 48887 467889998 77777 77654
No 185
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.52 E-value=2e-14 Score=121.17 Aligned_cols=130 Identities=20% Similarity=0.295 Sum_probs=90.4
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCccee
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLE 91 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~ 91 (350)
+.-.+++..+++|++++|+|+||+|||||+++|+|. .+|.+|.|.++|.. .+.
T Consensus 14 ~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~~~~----------------~i~ 66 (144)
T cd03221 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGE-----------LEPDEGIVTWGSTV----------------KIG 66 (144)
T ss_pred eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCceEEEECCeE----------------EEE
Confidence 344678889999999999999999999999999999 58999999998731 111
Q ss_pred eeeecccccccccCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 018809 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVE 170 (350)
Q Consensus 92 ~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~ 170 (350)
++.. .+.+++ +++. +++++ .+|+++++| ||++++|....+.+...+..+ .
T Consensus 67 ~~~~----------lS~G~~--~rv~-------laral~~~p~illlD---EP~~~LD~~~~~~l~~~l~~~-------~ 117 (144)
T cd03221 67 YFEQ----------LSGGEK--MRLA-------LAKLLLENPNLLLLD---EPTNHLDLESIEALEEALKEY-------P 117 (144)
T ss_pred EEcc----------CCHHHH--HHHH-------HHHHHhcCCCEEEEe---CCccCCCHHHHHHHHHHHHHc-------C
Confidence 1110 112222 3333 44554 599999999 999999998876554443321 1
Q ss_pred HHHhhcccccHHHHHHHHHHHHHHhhcCC
Q 018809 171 KSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (350)
Q Consensus 171 ~~~~~~~~h~~~~~~~l~~~i~~~L~~g~ 199 (350)
..+.. .+|+...+..+|+++ ..|++|+
T Consensus 118 ~til~-~th~~~~~~~~~d~v-~~l~~g~ 144 (144)
T cd03221 118 GTVIL-VSHDRYFLDQVATKI-IELEDGK 144 (144)
T ss_pred CEEEE-EECCHHHHHHhCCEE-EEEeCCC
Confidence 12212 249998888888888 6666653
No 186
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.8e-14 Score=128.51 Aligned_cols=172 Identities=20% Similarity=0.270 Sum_probs=101.4
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH------HHh---hccC--C
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LCQ---LFKP--K 83 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~------l~~---~~~~--~ 83 (350)
.+++|.|++|+.++|+|+||||||||+++++|. ..|.+|.+.+.|+++.. +.. +..+ .
T Consensus 48 ~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~-----------~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~ 116 (257)
T COG1119 48 GDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGE-----------HPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELH 116 (257)
T ss_pred cccceeecCCCcEEEECCCCCCHHHHHHHHhcc-----------cCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHH
Confidence 689999999999999999999999999999999 47788988887765321 111 1110 0
Q ss_pred CCCCcceeeeee--------cccccccccCcc--ccchHHHHHHHH--------------HHHHHHHhhc-CCCceeeec
Q 018809 84 SAVPAFLEIHDI--------AGLVRGAHEGQG--LGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 84 ~~~~~~l~~~D~--------~g~~~~~~~~~~--~~~~~l~~l~~~--------------d~~l~vv~a~-~~~~vl~ld 138 (350)
..++.+..+.|+ .|+......... ....++..+... ...+.++||+ .+|.+++||
T Consensus 117 ~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLD 196 (257)
T COG1119 117 ERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILD 196 (257)
T ss_pred hhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEec
Confidence 111222333333 333321111000 001111111111 1226788998 999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
||+.++|....+.+...+..+..... ...+ .-.+|..+++-...+++ -.|.+|+.++.+
T Consensus 197 ---EP~~GLDl~~re~ll~~l~~~~~~~~--~~~l-l~VtHh~eEi~~~~th~-lll~~g~v~~~g 255 (257)
T COG1119 197 ---EPAQGLDLIAREQLLNRLEELAASPG--APAL-LFVTHHAEEIPPCFTHR-LLLKEGEVVAQG 255 (257)
T ss_pred ---CccccCChHHHHHHHHHHHHHhcCCC--CceE-EEEEcchhhcccccceE-EEeeCCceeecc
Confidence 99999999997555443322211000 0000 00148888887777777 677778766543
No 187
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.52 E-value=9.7e-15 Score=132.14 Aligned_cols=171 Identities=13% Similarity=0.158 Sum_probs=105.0
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC---CcceEEEeCCcchhHH--Hh--hccCCC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE---PNEARVNIPDERFEWL--CQ--LFKPKS 84 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~---p~~G~i~~~~~~l~~l--~~--~~~~~~ 84 (350)
+.-.++++++.+|++++|+|+||||||||+++|+|. .+ |.+|.|.++|.++... .. .|.++.
T Consensus 21 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~-----------~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~ 89 (226)
T cd03234 21 RILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGR-----------VEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQD 89 (226)
T ss_pred ccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCc-----------cCCCCCCceEEEECCEECChHHhcccEEEeCCC
Confidence 345778999999999999999999999999999999 46 8899999998765321 10 122222
Q ss_pred -CCCcceeeeeecccccccc--c--Cccc----cch-HHHHHHHHHH--------------HHHHHhhc-CCCceeeecC
Q 018809 85 -AVPAFLEIHDIAGLVRGAH--E--GQGL----GNS-FLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 85 -~~~~~l~~~D~~g~~~~~~--~--~~~~----~~~-~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~ 139 (350)
.....+++.|+..+..... . .... ... .++.+...+. -+.+++++ .+|+++++|
T Consensus 90 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlD- 168 (226)
T cd03234 90 DILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILD- 168 (226)
T ss_pred CccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEe-
Confidence 2222344444443221000 0 0000 000 1111111110 15577777 799999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccH-HHHHHHHHHHHHHhhcCCccc
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQL-KIEHELCQRVKAWLQDGKDVR 202 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~-~~~~~l~~~i~~~L~~g~~~~ 202 (350)
||++++|......+...+..+.+ ....+... +|+. ..+.++||++ .+|.+|+++.
T Consensus 169 --EP~~gLD~~~~~~~~~~l~~~~~----~~~tiii~-sh~~~~~~~~~~d~i-~~l~~G~i~~ 224 (226)
T cd03234 169 --EPTSGLDSFTALNLVSTLSQLAR----RNRIVILT-IHQPRSDLFRLFDRI-LLLSSGEIVY 224 (226)
T ss_pred --CCCcCCCHHHHHHHHHHHHHHHH----CCCEEEEE-ecCCCHHHHHhCCEE-EEEeCCEEEe
Confidence 99999999987655554433211 11122122 3887 5889999999 8888887654
No 188
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=3.8e-15 Score=137.22 Aligned_cols=172 Identities=17% Similarity=0.199 Sum_probs=108.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-----cceEEEeCCcchhH-------HHh--
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEW-------LCQ-- 78 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p-----~~G~i~~~~~~l~~-------l~~-- 78 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|.. +| .+|.|.++|.++.. ...
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-----------~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 90 (254)
T PRK14273 22 ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMN-----------DLVEGIKIEGNVIYEGKNIYSNNFDILELRRKI 90 (254)
T ss_pred eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccc-----------cCCcCCCCceEEEECCEecccccccHHHHhhce
Confidence 346788999999999999999999999999999993 43 58999998875421 111
Q ss_pred hccCCCCCCcceeeeeeccccccccc--Cc-cccchHHHHHHHHH---------------------HHHHHHhhc-CCCc
Q 018809 79 LFKPKSAVPAFLEIHDIAGLVRGAHE--GQ-GLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPD 133 (350)
Q Consensus 79 ~~~~~~~~~~~l~~~D~~g~~~~~~~--~~-~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~ 133 (350)
.|.++......+++.|+..+...... .. .........++..+ .-+.+++++ .+|+
T Consensus 91 ~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ 170 (254)
T PRK14273 91 GMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPN 170 (254)
T ss_pred EEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 22232211112455554433211100 00 00011111111111 115677887 8999
Q ss_pred eeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 134 vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++++| ||++++|....+.+...+..+.+ ...+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 171 lllLD---EPt~~LD~~~~~~l~~~l~~~~~-----~~tvii~-sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 232 (254)
T PRK14273 171 VILMD---EPTSALDPISTGKIEELIINLKE-----SYTIIIV-THNMQQAGRISDRT-AFFLNGCIEEESS 232 (254)
T ss_pred EEEEe---CCCcccCHHHHHHHHHHHHHHhc-----CCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999 99999999987666655443311 1122122 49999999999999 8889998876544
No 189
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=3.6e-15 Score=138.99 Aligned_cols=172 Identities=17% Similarity=0.097 Sum_probs=106.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH------Hh--hccCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQ--LFKPKS 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l------~~--~~~~~~ 84 (350)
.-..++.++.+|++++|+|+||||||||+++|+|. .+|..|.|.++|..+... .. .|.++.
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 85 (274)
T PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL-----------LRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQN 85 (274)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEECCccccHHHHHhheEEEEEC
Confidence 45788899999999999999999999999999999 589999999998765321 11 122222
Q ss_pred C--CCcceeeeeeccccccccc-C----ccccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCC
Q 018809 85 A--VPAFLEIHDIAGLVRGAHE-G----QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVD 142 (350)
Q Consensus 85 ~--~~~~l~~~D~~g~~~~~~~-~----~~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~e 142 (350)
. .....++.|+..+...... . .......++.+...+. -+.+++++ .+|+++++| |
T Consensus 86 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD---E 162 (274)
T PRK13644 86 PETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFD---E 162 (274)
T ss_pred hhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---C
Confidence 1 1112344444332211100 0 0000011111111000 15577777 899999999 9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 143 P~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|++++|......+...+..+.+ -...+... +|+...+ ..|+++ .+|++|+++..++
T Consensus 163 Pt~gLD~~~~~~l~~~l~~l~~----~g~til~~-tH~~~~~-~~~d~v-~~l~~G~i~~~g~ 218 (274)
T PRK13644 163 VTSMLDPDSGIAVLERIKKLHE----KGKTIVYI-THNLEEL-HDADRI-IVMDRGKIVLEGE 218 (274)
T ss_pred CcccCCHHHHHHHHHHHHHHHh----CCCEEEEE-ecCHHHH-hhCCEE-EEEECCEEEEECC
Confidence 9999999887655554433211 01111122 4999988 469999 8899999876654
No 190
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=1.1e-15 Score=142.10 Aligned_cols=174 Identities=15% Similarity=0.157 Sum_probs=107.6
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh--hccCCC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKS 84 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~--~~~~~~ 84 (350)
+.=.++++++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++.. +.. .|.++.
T Consensus 23 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~ 91 (271)
T PRK13632 23 NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL-----------LKPQSGEIKIDGITISKENLKEIRKKIGIIFQN 91 (271)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEecCcCCHHHHhcceEEEEeC
Confidence 344778899999999999999999999999999999 58999999999876532 111 122222
Q ss_pred C--CCcceeeeeeccccccccc-C-cc---ccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCC
Q 018809 85 A--VPAFLEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVD 142 (350)
Q Consensus 85 ~--~~~~l~~~D~~g~~~~~~~-~-~~---~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~e 142 (350)
. .....++.|+..+...... . .. ....+++.+...+ .-+.+++++ .+|+++++| |
T Consensus 92 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD---E 168 (271)
T PRK13632 92 PDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFD---E 168 (271)
T ss_pred HHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---C
Confidence 1 1222445554433211000 0 00 0011111111111 115677887 899999999 9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 143 P~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|++++|....+.+...+..+.+. -...+... +|+...+. .|+++ .+|.+|++...++
T Consensus 169 P~~gLD~~~~~~l~~~l~~~~~~---~~~tiii~-sH~~~~~~-~~d~v-~~l~~G~i~~~g~ 225 (271)
T PRK13632 169 STSMLDPKGKREIKKIMVDLRKT---RKKTLISI-THDMDEAI-LADKV-IVFSEGKLIAQGK 225 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHHHh---cCcEEEEE-EechhHHh-hCCEE-EEEECCEEEEecC
Confidence 99999998876665554432211 00122122 48888875 79998 7889998775543
No 191
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=4.7e-15 Score=136.36 Aligned_cols=177 Identities=16% Similarity=0.157 Sum_probs=107.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~ 83 (350)
.-.+++..+++|++++|+|+||||||||+++|+|.... . ...|.+|.|.++|.++.. ... .|.++
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----~-~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q 92 (251)
T PRK14270 19 ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDL-----I-SNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQ 92 (251)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCc-----c-cCCCCccEEEECCEecccccccHHHHHhheEEEec
Confidence 34678899999999999999999999999999998310 0 001378999999876521 111 23333
Q ss_pred CCCCcceeeeeeccccccccc--Cc-cccchHHHHHHHHH---------------------HHHHHHhhc-CCCceeeec
Q 018809 84 SAVPAFLEIHDIAGLVRGAHE--GQ-GLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 84 ~~~~~~l~~~D~~g~~~~~~~--~~-~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~vl~ld 138 (350)
.......++.++..+...... .. .........++.++ .-+.+++++ .+|+++++|
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 172 (251)
T PRK14270 93 KPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMD 172 (251)
T ss_pred CCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 221112444454433211110 00 00001111111111 115577777 899999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+.+ ...+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 173 ---EP~~~LD~~~~~~l~~~L~~~~~-----~~tiiiv-sH~~~~~~~~~d~v-~~l~~G~i~~~~~ 229 (251)
T PRK14270 173 ---EPTSALDPISTLKIEDLMVELKK-----EYTIVIV-THNMQQASRVSDYT-AFFLMGDLIEFNK 229 (251)
T ss_pred ---CCcccCCHHHHHHHHHHHHHHHh-----CCeEEEE-EcCHHHHHHhcCEE-EEEECCeEEEeCC
Confidence 99999999887666555433221 1122122 49999999999999 8899998876543
No 192
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.52 E-value=2.4e-15 Score=135.61 Aligned_cols=168 Identities=15% Similarity=0.177 Sum_probs=101.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--------Hh--hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQ--LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------~~--~~~~ 82 (350)
.-.++++.+.+|++++|+|+||||||||+++|+|. .+|++|.|.++|..+... .. .|.+
T Consensus 20 il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~ 88 (220)
T TIGR02982 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGL-----------RSVQEGSLKVLGQELYGASEKELVQLRRNIGYIF 88 (220)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEc
Confidence 45788899999999999999999999999999999 589999999998765321 11 1222
Q ss_pred CC-CCCcceeeeeecccccccccC---c---cccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCC
Q 018809 83 KS-AVPAFLEIHDIAGLVRGAHEG---Q---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 83 ~~-~~~~~l~~~D~~g~~~~~~~~---~---~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~ 140 (350)
+. .....+++.++..+....... . .....+++.++..+. -+.+++++ .+|+++++|
T Consensus 89 q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlD-- 166 (220)
T TIGR02982 89 QAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLAD-- 166 (220)
T ss_pred CChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 22 112223444433221111000 0 000111111111111 15577777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCc
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~ 200 (350)
||+..+|....+.+...+..+.+. ....+... +|+.. ...+||++ .+|.+|+.
T Consensus 167 -EP~~~LD~~~~~~l~~~l~~~~~~---~~~tii~~-sh~~~-~~~~~d~v-~~l~~g~~ 219 (220)
T TIGR02982 167 -EPTAALDSKSGRDVVELMQKLARE---QGCTILIV-THDNR-ILDVADRI-VHMEDGKL 219 (220)
T ss_pred -CCCCcCCHHHHHHHHHHHHHHHHH---cCCEEEEE-eCCHH-HHhhCCEE-EEEECCEE
Confidence 999999998876555554332211 11122122 38886 45788988 67777753
No 193
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.52 E-value=5.9e-15 Score=132.90 Aligned_cols=166 Identities=19% Similarity=0.230 Sum_probs=102.5
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~~ 85 (350)
.-.+++.++.+|++++|+||||||||||+++|+|. .+|..|.|.++|..+... .. .|.++..
T Consensus 19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 87 (220)
T cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL-----------YKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDV 87 (220)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCC
Confidence 44678899999999999999999999999999999 578999999998765321 11 1223221
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHH-------------------------HHHHHHHHhhc-CCCceeeecC
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA-------------------------VDGIFHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~-------------------------~d~~l~vv~a~-~~~~vl~ld~ 139 (350)
.....++.|...+...... .......+..+.. ...-+.+++++ .+|+++++|
T Consensus 88 ~~~~~tv~e~l~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllD- 165 (220)
T cd03245 88 TLFYGTLRDNITLGAPLAD-DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLD- 165 (220)
T ss_pred ccccchHHHHhhcCCCCCC-HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEe-
Confidence 1111244444322211000 0000011111000 01125567777 799999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~ 201 (350)
||++++|......+...+..+.+ . ..+... +|+.... ++|+++ ..|++|+++
T Consensus 166 --EPt~~LD~~~~~~l~~~l~~~~~---~--~tii~~-sH~~~~~-~~~d~v-~~l~~g~i~ 217 (220)
T cd03245 166 --EPTSAMDMNSEERLKERLRQLLG---D--KTLIII-THRPSLL-DLVDRI-IVMDSGRIV 217 (220)
T ss_pred --CccccCCHHHHHHHHHHHHHhcC---C--CEEEEE-eCCHHHH-HhCCEE-EEEeCCeEe
Confidence 99999999997666665443321 1 122122 4988865 689988 778888754
No 194
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.52 E-value=4.2e-15 Score=150.20 Aligned_cols=174 Identities=17% Similarity=0.206 Sum_probs=110.3
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----H---hhccCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C---QLFKPKS 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~---~~~~~~~ 84 (350)
.-.+++.++.+|+++||+||||||||||+++|+|. .+|++|.|.++|.++... . -.|.++.
T Consensus 20 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~ 88 (510)
T PRK09700 20 ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI-----------HEPTKGTITINNINYNKLDHKLAAQLGIGIIYQE 88 (510)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------cCCCccEEEECCEECCCCCHHHHHHCCeEEEeec
Confidence 34688999999999999999999999999999999 578999999998754321 1 0122222
Q ss_pred -CCCcceeeeeecccccccc---cCc------cccchHHHHHHHHH-----------------HHHHHHhhc-CCCceee
Q 018809 85 -AVPAFLEIHDIAGLVRGAH---EGQ------GLGNSFLSHIRAVD-----------------GIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 85 -~~~~~l~~~D~~g~~~~~~---~~~------~~~~~~l~~l~~~d-----------------~~l~vv~a~-~~~~vl~ 136 (350)
.....+++.|+..+..... .+. ....++.+.+.... .-+.+++++ .+|++++
T Consensus 89 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll 168 (510)
T PRK09700 89 LSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVII 168 (510)
T ss_pred ccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 2222344444433221100 000 00000011111100 015677777 8999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
+| ||++++|......+...+..+.+ ....+... +|+...+..+|+++ .+|.+|+++..++.
T Consensus 169 LD---EPt~~LD~~~~~~l~~~l~~l~~----~g~tiiiv-sHd~~~~~~~~d~v-~~l~~G~i~~~g~~ 229 (510)
T PRK09700 169 MD---EPTSSLTNKEVDYLFLIMNQLRK----EGTAIVYI-SHKLAEIRRICDRY-TVMKDGSSVCSGMV 229 (510)
T ss_pred Ee---CCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEeeecch
Confidence 99 99999999997666665443321 11122122 49999999999999 88999998766543
No 195
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.52 E-value=1.5e-15 Score=142.03 Aligned_cols=174 Identities=14% Similarity=0.094 Sum_probs=107.2
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH------Hh--hccCC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQ--LFKPK 83 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l------~~--~~~~~ 83 (350)
+.-.+++.++.+|++++|+|+||||||||+++|+|. ..|++|.|.++|.++... .. .|.++
T Consensus 24 ~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q 92 (280)
T PRK13633 24 LALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL-----------LIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQ 92 (280)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEeccccccHHHHhhheEEEec
Confidence 355778899999999999999999999999999999 689999999998765321 11 12222
Q ss_pred CC--CCcceeeeeeccccccccc--Cc---cccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCC
Q 018809 84 SA--VPAFLEIHDIAGLVRGAHE--GQ---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 84 ~~--~~~~l~~~D~~g~~~~~~~--~~---~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~ 141 (350)
.. .....++.|...+...... .. .....+++.+...+. -+.+++++ .+|+++++|
T Consensus 93 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD--- 169 (280)
T PRK13633 93 NPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFD--- 169 (280)
T ss_pred ChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---
Confidence 21 0111223333322211000 00 000111111111111 15677777 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+. ....+... +|+...+.. ||++ .+|.+|+++..++
T Consensus 170 EPt~gLD~~~~~~l~~~l~~l~~~---~g~tillv-tH~~~~~~~-~d~v-~~l~~G~i~~~g~ 227 (280)
T PRK13633 170 EPTAMLDPSGRREVVNTIKELNKK---YGITIILI-THYMEEAVE-ADRI-IVMDSGKVVMEGT 227 (280)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHh---cCCEEEEE-ecChHHHhc-CCEE-EEEECCEEEEecC
Confidence 999999999986665554433221 11122122 499998865 9999 8889998876654
No 196
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.52 E-value=7.5e-15 Score=132.28 Aligned_cols=168 Identities=18% Similarity=0.205 Sum_probs=102.1
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKS 84 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~ 84 (350)
+.-.+++.++++|++++|+|+||||||||+++|+|. ..|.+|.|.++|..+... .. .|.++.
T Consensus 18 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 86 (221)
T cd03244 18 PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL-----------VELSSGSILIDGVDISKIGLHDLRSRISIIPQD 86 (221)
T ss_pred ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCCEEEECCEEhHhCCHHHHhhhEEEECCC
Confidence 345788999999999999999999999999999999 589999999998765321 11 122222
Q ss_pred CCCcceeeeeecccccccccCccccchHHHHHHHH-------------------------HHHHHHHhhc-CCCceeeec
Q 018809 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV-------------------------DGIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~-------------------------d~~l~vv~a~-~~~~vl~ld 138 (350)
......++.|+..+...... .. ....++.+... ..-+.+++++ .+|+++++|
T Consensus 87 ~~l~~~tv~enl~~~~~~~~-~~-~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllD 164 (221)
T cd03244 87 PVLFSGTIRSNLDPFGEYSD-EE-LWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLD 164 (221)
T ss_pred CccccchHHHHhCcCCCCCH-HH-HHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 11111233333322111000 00 00000100000 1114567777 899999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcccc
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~ 203 (350)
||++++|....+.+...+..+.+ ...+... +|+...+.. |+++ ..|.+|+++..
T Consensus 165 ---EP~~~LD~~~~~~l~~~l~~~~~-----~~tii~~-sh~~~~~~~-~d~i-~~l~~g~~~~~ 218 (221)
T cd03244 165 ---EATASVDPETDALIQKTIREAFK-----DCTVLTI-AHRLDTIID-SDRI-LVLDKGRVVEF 218 (221)
T ss_pred ---CccccCCHHHHHHHHHHHHHhcC-----CCEEEEE-eCCHHHHhh-CCEE-EEEECCeEEec
Confidence 99999999987655554433211 1112122 388888765 8888 77888876544
No 197
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=5.6e-15 Score=136.44 Aligned_cols=172 Identities=17% Similarity=0.240 Sum_probs=107.5
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC-----CcceEEEeCCcchhH-------HHh--
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-----PNEARVNIPDERFEW-------LCQ-- 78 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~-----p~~G~i~~~~~~l~~-------l~~-- 78 (350)
.-.++++++++|+++||+|+||||||||+++|+|.. + |.+|.|.++|.++.. ...
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~-----------~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 95 (258)
T PRK14268 27 ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMN-----------DLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNV 95 (258)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-----------CcccCCCcceEEEECCEEcccccchHHHHhhhE
Confidence 346788999999999999999999999999999983 3 379999998876421 111
Q ss_pred hccCCCCCCcceeeeeeccccccccc--CccccchHHHHHHHH---------------------HHHHHHHhhc-CCCce
Q 018809 79 LFKPKSAVPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDI 134 (350)
Q Consensus 79 ~~~~~~~~~~~l~~~D~~g~~~~~~~--~~~~~~~~l~~l~~~---------------------d~~l~vv~a~-~~~~v 134 (350)
.|.++.......++.++..+...... .......+.+.++.. -.-+.+++++ .+|++
T Consensus 96 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 175 (258)
T PRK14268 96 GMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKI 175 (258)
T ss_pred EEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 12232211111344444433211000 000000011111111 0115677777 89999
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 135 l~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+++| ||++++|......+...+..+. + ...+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 176 lllD---EPt~~LD~~~~~~l~~~l~~l~----~-~~tiiiv-sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 236 (258)
T PRK14268 176 ILFD---EPTSALDPISTARIEDLIMNLK----K-DYTIVIV-THNMQQAARISDYT-GFFLMGELIEFGQ 236 (258)
T ss_pred EEEe---CCCcccCHHHHHHHHHHHHHHh----h-CCEEEEE-ECCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999 9999999999866655544331 1 1122122 49999999999999 8889998876543
No 198
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=5.3e-15 Score=134.00 Aligned_cols=170 Identities=18% Similarity=0.238 Sum_probs=104.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~~ 85 (350)
.-.+++.++++|++++|+||||||||||+++|+|. .+|.+|.|.++|.++... .. .|.++..
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 86 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF-----------YDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDT 86 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCc
Confidence 44678899999999999999999999999999999 588999999998765421 11 2323321
Q ss_pred CCcceeeeeecccccccccCcccc--------chHHHHH---------------H-HHHHHHHHHhhc-CCCceeeecCC
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLG--------NSFLSHI---------------R-AVDGIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~--------~~~l~~l---------------~-~~d~~l~vv~a~-~~~~vl~ld~~ 140 (350)
.....++.|...+........... ..+++.+ . ....-+.+++++ .+|+++++|
T Consensus 87 ~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllD-- 164 (229)
T cd03254 87 FLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILD-- 164 (229)
T ss_pred hhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 111123334333221110000000 0000000 0 001125567777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
||++++|....+.+...+..+. + ...+... +|+...+. .|+++ ..|.+|++...+
T Consensus 165 -EP~~~LD~~~~~~l~~~l~~~~----~-~~tii~~-sh~~~~~~-~~d~i-~~l~~g~~~~~~ 219 (229)
T cd03254 165 -EATSNIDTETEKLIQEALEKLM----K-GRTSIII-AHRLSTIK-NADKI-LVLDDGKIIEEG 219 (229)
T ss_pred -CccccCCHHHHHHHHHHHHHhc----C-CCEEEEE-ecCHHHHh-hCCEE-EEEeCCeEEEeC
Confidence 9999999998766655543321 1 1122122 48888875 59998 888999876544
No 199
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=1.4e-15 Score=144.60 Aligned_cols=173 Identities=17% Similarity=0.117 Sum_probs=108.5
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----------------
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----------------- 75 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~----------------- 75 (350)
.-.+++.++.+|+++||+|+||||||||+++|+|+ .+|.+|.|.++|.++..
T Consensus 41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl-----------~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~ 109 (320)
T PRK13631 41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL-----------IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIK 109 (320)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEEECCEEcccccccccccccccccccc
Confidence 45788899999999999999999999999999999 68999999999865421
Q ss_pred ----HHh--hccCCCC--CCcceeeeeeccccccccc-C-c---cccchHHHHHHHH-HH--------------HHHHHh
Q 018809 76 ----LCQ--LFKPKSA--VPAFLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAV-DG--------------IFHVLR 127 (350)
Q Consensus 76 ----l~~--~~~~~~~--~~~~l~~~D~~g~~~~~~~-~-~---~~~~~~l~~l~~~-d~--------------~l~vv~ 127 (350)
+.. .|.++.. .....++.+...+...... . . .....+++.+... +. -+.+++
T Consensus 110 ~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAr 189 (320)
T PRK13631 110 NFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAG 189 (320)
T ss_pred hHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHH
Confidence 111 1112211 0111233333322210000 0 0 0011111111110 00 156778
Q ss_pred hc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 128 AF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 128 a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++ .+|+++++| ||++++|......+...+..+.+ ...++... +|+...+..+||++ .+|.+|+++..++
T Consensus 190 aL~~~p~iLLLD---EPtsgLD~~~~~~l~~~L~~l~~----~g~Tiiiv-tHd~~~~~~~adri-~vl~~G~i~~~g~ 259 (320)
T PRK13631 190 ILAIQPEILIFD---EPTAGLDPKGEHEMMQLILDAKA----NNKTVFVI-THTMEHVLEVADEV-IVMDKGKILKTGT 259 (320)
T ss_pred HHHcCCCEEEEE---CCccCCCHHHHHHHHHHHHHHHH----CCCEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 87 899999999 99999999997666655443321 11122122 49999999999999 8999999887664
No 200
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=6.9e-15 Score=134.87 Aligned_cols=175 Identities=15% Similarity=0.175 Sum_probs=107.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~~ 85 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|.... .+|.+|.|.++|+++... .. .|.++..
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--------~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~ 88 (246)
T PRK14269 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDK--------IAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQP 88 (246)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--------CCCCceEEEECCEecccCCHHHHhhhEEEEecCC
Confidence 34678899999999999999999999999999998310 136899999998765321 11 2223221
Q ss_pred CCcceeeeeeccccccccc----CccccchHHHHHHHHHH---------------------HHHHHhhc-CCCceeeecC
Q 018809 86 VPAFLEIHDIAGLVRGAHE----GQGLGNSFLSHIRAVDG---------------------IFHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~----~~~~~~~~l~~l~~~d~---------------------~l~vv~a~-~~~~vl~ld~ 139 (350)
.....++.|+..+....+. ......++.+.++..++ -+.+++++ .+|+++++|
T Consensus 89 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD- 167 (246)
T PRK14269 89 NVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLD- 167 (246)
T ss_pred ccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc-
Confidence 1111355555433211000 00000011111111111 15677887 899999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+. . ...+.. .+|+...+..+||++ .+|.+|+++..++
T Consensus 168 --EP~~~LD~~~~~~l~~~l~~~~----~-~~tiii-~tH~~~~~~~~~d~i-~~l~~G~i~~~g~ 224 (246)
T PRK14269 168 --EPTSALDPISSGVIEELLKELS----H-NLSMIM-VTHNMQQGKRVADYT-AFFHLGELIEFGE 224 (246)
T ss_pred --CCcccCCHHHHHHHHHHHHHHh----C-CCEEEE-EecCHHHHHhhCcEE-EEEECCEEEEECC
Confidence 9999999988655544433221 1 112212 249999999999999 8899998876543
No 201
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=6.1e-15 Score=136.32 Aligned_cols=176 Identities=15% Similarity=0.196 Sum_probs=107.1
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPKS 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~~ 84 (350)
=.++++.+++|++++|+|+||||||||+++|+|.... .| ..|++|.|.++|.++.. +.. .|.++.
T Consensus 29 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~p---~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 102 (260)
T PRK10744 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYEL---YP---EQRAEGEILLDGENILTPKQDIALLRAKVGMVFQK 102 (260)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccccc---CC---CCCcceEEEECCEEccccccchHHHhcceEEEecC
Confidence 4678899999999999999999999999999998310 00 01578999999876521 111 122222
Q ss_pred CCCcceeeeeecccccccccC---ccccchHHHHHHHHH---------------------HHHHHHhhc-CCCceeeecC
Q 018809 85 AVPAFLEIHDIAGLVRGAHEG---QGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~---~~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~vl~ld~ 139 (350)
......++.|+..+......+ .....+..+.++..+ .-+.+++++ .+|+++++|
T Consensus 103 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD- 181 (260)
T PRK10744 103 PTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLD- 181 (260)
T ss_pred CccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEc-
Confidence 111113444444332110000 000011111111111 015577777 899999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+ ...+... +|+...+..+++++ .+|++|+++..++
T Consensus 182 --EPt~~LD~~~~~~l~~~L~~~~~-----~~tiii~-sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 238 (260)
T PRK10744 182 --EPCSALDPISTGRIEELITELKQ-----DYTVVIV-THNMQQAARCSDYT-AFMYLGELIEFGN 238 (260)
T ss_pred --CCCccCCHHHHHHHHHHHHHHhc-----CCeEEEE-eCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999987666555443311 1122122 49999999999999 8889998876543
No 202
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.51 E-value=8.1e-15 Score=130.28 Aligned_cols=162 Identities=20% Similarity=0.183 Sum_probs=100.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH--------hhccCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKPKS 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~--------~~~~~~~ 84 (350)
.=.++++++.+|++++|+|+||||||||+++|+|.. +..|.+|.|.++|.++.... ..|.++.
T Consensus 15 ~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~---------~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 85 (200)
T cd03217 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHP---------KYEVTEGEILFKGEDITDLPPEERARLGIFLAFQY 85 (200)
T ss_pred eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCC---------cCCCCccEEEECCEECCcCCHHHHhhCcEEEeecC
Confidence 346788999999999999999999999999999982 02689999999987653211 0111211
Q ss_pred C-CCcceeeeeecccccccccCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHH
Q 018809 85 A-VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFM 162 (350)
Q Consensus 85 ~-~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l 162 (350)
. ....+++.++. .......+.|++ ++ +.+++++ .+|+++++| ||++++|....+.+...+..+
T Consensus 86 ~~~~~~~~~~~~l---~~~~~~LS~G~~--qr-------v~laral~~~p~illlD---EPt~~LD~~~~~~l~~~L~~~ 150 (200)
T cd03217 86 PPEIPGVKNADFL---RYVNEGFSGGEK--KR-------NEILQLLLLEPDLAILD---EPDSGLDIDALRLVAEVINKL 150 (200)
T ss_pred hhhccCccHHHHH---hhccccCCHHHH--HH-------HHHHHHHhcCCCEEEEe---CCCccCCHHHHHHHHHHHHHH
Confidence 1 11111111111 000001111111 22 3455555 699999999 999999998875554443322
Q ss_pred HHHHHHHHHHHhhcccccHHHHHH-HHHHHHHHhhcCCccccC
Q 018809 163 ERRIEDVEKSMKRSNDKQLKIEHE-LCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 163 ~~~~~~~~~~~~~~~~h~~~~~~~-l~~~i~~~L~~g~~~~~~ 204 (350)
.+ ....+... +|+...+.. +++++ .+|.+|+....+
T Consensus 151 ~~----~~~tiii~-sh~~~~~~~~~~d~i-~~l~~G~i~~~~ 187 (200)
T cd03217 151 RE----EGKSVLII-THYQRLLDYIKPDRV-HVLYDGRIVKSG 187 (200)
T ss_pred HH----CCCEEEEE-ecCHHHHHHhhCCEE-EEEECCEEEEEc
Confidence 11 01111122 499988877 79999 888999876554
No 203
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.51 E-value=4.5e-15 Score=135.64 Aligned_cols=174 Identities=15% Similarity=0.092 Sum_probs=103.2
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH------H--hhccCCC-
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKS- 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l------~--~~~~~~~- 84 (350)
-.+++.++++|++++|+|+||||||||+++|+|... .+|.+|.|.++|.++... . ..|.++.
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 86 (243)
T TIGR01978 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPS---------YEVTSGTILFKGQDLLELEPDERARAGLFLAFQYP 86 (243)
T ss_pred EeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCcceEEECCEecCCCCHHHhhccceEeeeccc
Confidence 367889999999999999999999999999999820 158899999998654211 1 1122222
Q ss_pred CCCcceeeeeecccccccc---------cCc---cccchHHHHHHH----------------HHHHHHHHhhc-CCCcee
Q 018809 85 AVPAFLEIHDIAGLVRGAH---------EGQ---GLGNSFLSHIRA----------------VDGIFHVLRAF-EDPDII 135 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~---------~~~---~~~~~~l~~l~~----------------~d~~l~vv~a~-~~~~vl 135 (350)
.....+++.|+..+..... ... ......++.+.. ...-+.+++++ .+|+++
T Consensus 87 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 166 (243)
T TIGR01978 87 EEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLA 166 (243)
T ss_pred cccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEE
Confidence 1111222222211100000 000 000000000000 00114566776 799999
Q ss_pred eecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHH-HHHHHHHhhcCCccccCC
Q 018809 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHEL-CQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 136 ~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l-~~~i~~~L~~g~~~~~~~ 205 (350)
++| ||++++|....+.+...+..+.+ -...+... +|+...+..+ ||++ .+|.+|++...++
T Consensus 167 llD---EPt~~LD~~~~~~l~~~l~~~~~----~~~tvi~v-sH~~~~~~~~~~d~i-~~l~~G~i~~~g~ 228 (243)
T TIGR01978 167 ILD---EIDSGLDIDALKIVAEGINRLRE----PDRSFLII-THYQRLLNYIKPDYV-HVLLDGRIVKSGD 228 (243)
T ss_pred Eec---CCcccCCHHHHHHHHHHHHHHHH----CCcEEEEE-EecHHHHHhhcCCeE-EEEeCCEEEEecC
Confidence 999 99999999987666555433211 01122122 4999999888 7998 7889998876554
No 204
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.51 E-value=6.5e-15 Score=134.15 Aligned_cols=171 Identities=19% Similarity=0.233 Sum_probs=105.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~~ 85 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++... .. .|.++..
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 85 (237)
T cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF-----------YVPENGRVLVDGHDLALADPAWLRRQVGVVLQEN 85 (237)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCc
Confidence 34678899999999999999999999999999999 589999999999765321 11 2223322
Q ss_pred CCcceeeeeecccccccccCcccc--------chHHHHH---------------H-HHHHHHHHHhhc-CCCceeeecCC
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLG--------NSFLSHI---------------R-AVDGIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~--------~~~l~~l---------------~-~~d~~l~vv~a~-~~~~vl~ld~~ 140 (350)
.....++.|+..+........... ..++..+ . ....-+.+++++ .+|+++++|
T Consensus 86 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD-- 163 (237)
T cd03252 86 VLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFD-- 163 (237)
T ss_pred hhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEe--
Confidence 111234444433321100000000 0000000 0 000115577777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+. + ...+... +|+...+. .|+++ .+|.+|+++..++
T Consensus 164 -EP~~~LD~~~~~~l~~~l~~~~----~-~~tiii~-sH~~~~~~-~~d~v-~~l~~G~i~~~~~ 219 (237)
T cd03252 164 -EATSALDYESEHAIMRNMHDIC----A-GRTVIII-AHRLSTVK-NADRI-IVMEKGRIVEQGS 219 (237)
T ss_pred -CCcccCCHHHHHHHHHHHHHhc----C-CCEEEEE-eCCHHHHH-hCCEE-EEEECCEEEEEcC
Confidence 9999999999766655543321 1 1122122 49998875 59998 8889998876543
No 205
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.51 E-value=6.8e-15 Score=134.11 Aligned_cols=171 Identities=16% Similarity=0.207 Sum_probs=105.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~~ 85 (350)
.-.+++.++++|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++... .. .|.++..
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~ 86 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF-----------YDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEP 86 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc-----------CCCCCCEEEECCEehhhcCHHHHHhhEEEECCch
Confidence 44678899999999999999999999999999999 589999999998765321 11 1222221
Q ss_pred CCcceeeeeecccccccccCcccc--------chHHHHH---------------H-HHHHHHHHHhhc-CCCceeeecCC
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLG--------NSFLSHI---------------R-AVDGIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~--------~~~l~~l---------------~-~~d~~l~vv~a~-~~~~vl~ld~~ 140 (350)
.....++.|...+........... ..++..+ . .....+.+++++ .+|+++++|
T Consensus 87 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD-- 164 (238)
T cd03249 87 VLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLD-- 164 (238)
T ss_pred hhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 111124444433221110000000 0000000 0 001124567777 799999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+. + ...+... +|+...+. .||++ .+|.+|+++..++
T Consensus 165 -EP~~gLD~~~~~~l~~~l~~~~---~--g~~vi~~-sh~~~~~~-~~d~v-~~l~~G~i~~~~~ 220 (238)
T cd03249 165 -EATSALDAESEKLVQEALDRAM---K--GRTTIVI-AHRLSTIR-NADLI-AVLQNGQVVEQGT 220 (238)
T ss_pred -CccccCCHHHHHHHHHHHHHhc---C--CCEEEEE-eCCHHHHh-hCCEE-EEEECCEEEEeCC
Confidence 9999999999766655543321 0 1111122 49998886 89999 8899998776543
No 206
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.51 E-value=5.7e-15 Score=137.47 Aligned_cols=171 Identities=19% Similarity=0.249 Sum_probs=103.3
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH----hhccCCCC-C--
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----QLFKPKSA-V-- 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~----~~~~~~~~-~-- 86 (350)
-.++++++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++.... -.|.++.. .
T Consensus 23 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~ 91 (272)
T PRK15056 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF-----------VRLASGKISILGQPTRQALQKNLVAYVPQSEEVDW 91 (272)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEEhHHhhccceEEEecccccccc
Confidence 3678899999999999999999999999999999 6899999999997653211 11222221 1
Q ss_pred Ccceeeeeeccccccc-------c-c-CccccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCC
Q 018809 87 PAFLEIHDIAGLVRGA-------H-E-GQGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVD 142 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~-------~-~-~~~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~e 142 (350)
.....+.++..+.... . . ........++.+...+. -+.+++++ .+|+++++| |
T Consensus 92 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD---E 168 (272)
T PRK15056 92 SFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD---E 168 (272)
T ss_pred CCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 0011222222111000 0 0 00000111111111111 15577777 899999999 9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 143 P~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|++++|....+.+...+..+.+ ....+... +|+...+..+|+++ .++ +|+++..++
T Consensus 169 Pt~~LD~~~~~~l~~~L~~~~~----~g~tviiv-sH~~~~~~~~~d~v-~~~-~G~i~~~g~ 224 (272)
T PRK15056 169 PFTGVDVKTEARIISLLRELRD----EGKTMLVS-THNLGSVTEFCDYT-VMV-KGTVLASGP 224 (272)
T ss_pred CCccCCHHHHHHHHHHHHHHHh----CCCEEEEE-eCCHHHHHHhCCEE-EEE-CCEEEeecC
Confidence 9999999987666554433211 11122122 49999999999998 556 788776554
No 207
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.51 E-value=4.1e-15 Score=137.04 Aligned_cols=174 Identities=16% Similarity=0.155 Sum_probs=103.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC----cceEEEeCCcchhHHH-----hhccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP----NEARVNIPDERFEWLC-----QLFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p----~~G~i~~~~~~l~~l~-----~~~~~~ 83 (350)
.-.+++..+.+|++++|+|+||||||||+++|+|. .+| ++|.|.++|.++.... -.|.++
T Consensus 18 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q 86 (254)
T PRK10418 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI-----------LPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQ 86 (254)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCCcCCEEEECCeeccccccccceEEEEec
Confidence 34678899999999999999999999999999999 466 8999999987653110 012222
Q ss_pred CC---CCcceeeeeecccc---cccccCccccchHHHHHHH-----------------HHHHHHHHhhc-CCCceeeecC
Q 018809 84 SA---VPAFLEIHDIAGLV---RGAHEGQGLGNSFLSHIRA-----------------VDGIFHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 84 ~~---~~~~l~~~D~~g~~---~~~~~~~~~~~~~l~~l~~-----------------~d~~l~vv~a~-~~~~vl~ld~ 139 (350)
.. +....++.+..... .+...........++.+.. ...-+.+++++ .+|+++++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLD- 165 (254)
T PRK10418 87 NPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIAD- 165 (254)
T ss_pred CCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEe-
Confidence 21 11111111111000 0000000000011111110 00115577777 899999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+ .....+... +|+...+..+|+++ ..|.+|++...++
T Consensus 166 --EPt~~LD~~~~~~l~~~L~~~~~---~~g~til~~-sH~~~~~~~~~d~v-~~l~~G~i~~~~~ 224 (254)
T PRK10418 166 --EPTTDLDVVAQARILDLLESIVQ---KRALGMLLV-THDMGVVARLADDV-AVMSHGRIVEQGD 224 (254)
T ss_pred --CCCcccCHHHHHHHHHHHHHHHH---hcCcEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 99999999887665555433221 111112122 49999999999999 8889998775543
No 208
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.51 E-value=4.9e-15 Score=141.32 Aligned_cols=174 Identities=17% Similarity=0.192 Sum_probs=108.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH--------h--hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------Q--LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~--------~--~~~~ 82 (350)
.-..++.+|.+|+++||+|+||||||||+++|+|+ ..|++|.|.++|.++..+. . .|.+
T Consensus 30 ~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl-----------~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~ 98 (327)
T PRK11308 30 ALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI-----------ETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVF 98 (327)
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC-----------CCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEE
Confidence 45778999999999999999999999999999999 5789999999997653211 0 1111
Q ss_pred CC---CCCcceeeeeecccc----cccccC--ccccchHHHHHHHH-HHH--------------HHHHhhc-CCCceeee
Q 018809 83 KS---AVPAFLEIHDIAGLV----RGAHEG--QGLGNSFLSHIRAV-DGI--------------FHVLRAF-EDPDIIHV 137 (350)
Q Consensus 83 ~~---~~~~~l~~~D~~g~~----~~~~~~--~~~~~~~l~~l~~~-d~~--------------l~vv~a~-~~~~vl~l 137 (350)
|. .+...+++.+..... ...... ......+++.+... +.. +.+++|+ .+|+++++
T Consensus 99 Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLil 178 (327)
T PRK11308 99 QNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVA 178 (327)
T ss_pred cCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 11 111112222221110 000000 00011112111110 111 5577777 89999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++.+|......++..+..+.+. ....+... +|++..+..+||++ .+|..|+++..++
T Consensus 179 D---EPts~LD~~~~~~i~~lL~~l~~~---~g~til~i-THdl~~~~~~adrv-~vm~~G~ive~g~ 238 (327)
T PRK11308 179 D---EPVSALDVSVQAQVLNLMMDLQQE---LGLSYVFI-SHDLSVVEHIADEV-MVMYLGRCVEKGT 238 (327)
T ss_pred E---CCCccCCHHHHHHHHHHHHHHHHH---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9 999999999876666655433221 11122122 49999999999999 8999999886654
No 209
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.50 E-value=6.7e-15 Score=136.73 Aligned_cols=174 Identities=17% Similarity=0.227 Sum_probs=105.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--------Hh--hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQ--LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------~~--~~~~ 82 (350)
.=.++++++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|..+... .. .|.+
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~ 95 (268)
T PRK10419 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL-----------ESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVF 95 (268)
T ss_pred eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEeccccChhHHHHHHhcEEEEE
Confidence 44788899999999999999999999999999999 579999999998754321 11 1222
Q ss_pred CCC---CCcceeeeeeccccccc----cc--CccccchHHHHHHH---------------HHHHHHHHhhc-CCCceeee
Q 018809 83 KSA---VPAFLEIHDIAGLVRGA----HE--GQGLGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 83 ~~~---~~~~l~~~D~~g~~~~~----~~--~~~~~~~~l~~l~~---------------~d~~l~vv~a~-~~~~vl~l 137 (350)
+.. ++...++.++..+.... .. ........+..+.. ....+.+++++ .+|+++++
T Consensus 96 q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllL 175 (268)
T PRK10419 96 QDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLIL 175 (268)
T ss_pred cChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEE
Confidence 221 11122222222110000 00 00000011111100 00115567777 89999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++++|....+.+...+..+.+. ....+... +|+...+..+||++ ..|.+|++...++
T Consensus 176 D---EPt~~LD~~~~~~~~~~l~~~~~~---~~~tiiiv-sH~~~~i~~~~d~i-~~l~~G~i~~~g~ 235 (268)
T PRK10419 176 D---EAVSNLDLVLQAGVIRLLKKLQQQ---FGTACLFI-THDLRLVERFCQRV-MVMDNGQIVETQP 235 (268)
T ss_pred e---CCCcccCHHHHHHHHHHHHHHHHH---cCcEEEEE-ECCHHHHHHhCCEE-EEEECCEEeeeCC
Confidence 9 999999998876655554333221 11122122 49999999999999 8888898765544
No 210
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.50 E-value=1e-14 Score=108.62 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=41.1
Q ss_pred CceeeccC-----------CCCeeeeecCCCCChhhhhhccccccccCeeEEEEEe
Q 018809 304 LIYFFTAG-----------PDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVVA 348 (350)
Q Consensus 304 li~~ft~~-----------~~e~~a~~~~~gsta~~~A~~IHsd~~~~fi~A~v~~ 348 (350)
||++||+. +++.+||++++|+||+|+|++||+||+++|+||+||+
T Consensus 1 li~VYpv~~~~~~~~~~~g~d~~~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~ 56 (76)
T cd04938 1 LIPVYPVKNIHTFTNGSGGNVFRDCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGR 56 (76)
T ss_pred CEEEEEcCCCccccCcCCCCccceeEEEcCCCCHHHHHHHHhHHHHhccEEEEEcc
Confidence 57889853 5678999999999999999999999999999999996
No 211
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=1.8e-15 Score=141.57 Aligned_cols=174 Identities=16% Similarity=0.173 Sum_probs=107.4
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcc---eEEEeCCcchhH-----HHh--hcc
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE---ARVNIPDERFEW-----LCQ--LFK 81 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~---G~i~~~~~~l~~-----l~~--~~~ 81 (350)
+.-.+++..+.+|+++||+|+||||||||+++|+|. ..|.. |.|.++|..+.. ... .|.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~-----------~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v 89 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL-----------LLPDDNPNSKITVDGITLTAKTVWDIREKVGIV 89 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcc-----------cCCCCCCCcEEEECCEECCcCCHHHHHhheEEE
Confidence 345788899999999999999999999999999999 56776 899999876532 111 122
Q ss_pred CCCC--CCcceeeeeeccccccccc--CccccchHHHHHHHH---HH--------------HHHHHhhc-CCCceeeecC
Q 018809 82 PKSA--VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAV---DG--------------IFHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 82 ~~~~--~~~~l~~~D~~g~~~~~~~--~~~~~~~~l~~l~~~---d~--------------~l~vv~a~-~~~~vl~ld~ 139 (350)
++.. .....++.|...+...... ......++.+.++.. +. -+.+++++ .+|+++++|
T Consensus 90 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllD- 168 (282)
T PRK13640 90 FQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILD- 168 (282)
T ss_pred EECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEE-
Confidence 2221 1223445554433211100 000000111111111 11 15577777 899999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+.+. ....+... +|+...+ ..||++ ..|.+|+++..++
T Consensus 169 --EPt~gLD~~~~~~l~~~l~~l~~~---~g~tvli~-tH~~~~~-~~~d~i-~~l~~G~i~~~g~ 226 (282)
T PRK13640 169 --ESTSMLDPAGKEQILKLIRKLKKK---NNLTVISI-THDIDEA-NMADQV-LVLDDGKLLAQGS 226 (282)
T ss_pred --CCcccCCHHHHHHHHHHHHHHHHh---cCCEEEEE-ecCHHHH-HhCCEE-EEEECCEEEEeCC
Confidence 999999999976665554332211 11122122 4999887 479999 8889999876654
No 212
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.50 E-value=1.8e-15 Score=140.58 Aligned_cols=173 Identities=12% Similarity=0.091 Sum_probs=103.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~--~~~~~~~ 85 (350)
.-.++++.+++|++++|+||||||||||+++|+|. .+|.+|.|.++|..+.. ... .|.++..
T Consensus 24 ~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 92 (269)
T PRK13648 24 TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI-----------EKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNP 92 (269)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHhheeEEEeCh
Confidence 34678899999999999999999999999999999 68999999999876421 111 1222211
Q ss_pred --CCcceeeeeeccccccccc-C-ccccchHHHHHHHHH-----------------HHHHHHhhc-CCCceeeecCCCCC
Q 018809 86 --VPAFLEIHDIAGLVRGAHE-G-QGLGNSFLSHIRAVD-----------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (350)
Q Consensus 86 --~~~~l~~~D~~g~~~~~~~-~-~~~~~~~l~~l~~~d-----------------~~l~vv~a~-~~~~vl~ld~~~eP 143 (350)
.....++.+...+...... . ..........++..+ .-+.+++++ .+|+++++| ||
T Consensus 93 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD---EP 169 (269)
T PRK13648 93 DNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILD---EA 169 (269)
T ss_pred HHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CC
Confidence 1111122222211100000 0 000000000111110 115577777 899999999 99
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 144 ~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++++|......+...+..+.+ .....+... +|+...+.. |+++ .+|.+|+++..++
T Consensus 170 t~~LD~~~~~~l~~~L~~~~~---~~~~tiiiv-tH~~~~~~~-~d~i-~~l~~G~i~~~g~ 225 (269)
T PRK13648 170 TSMLDPDARQNLLDLVRKVKS---EHNITIISI-THDLSEAME-ADHV-IVMNKGTVYKEGT 225 (269)
T ss_pred cccCCHHHHHHHHHHHHHHHH---hcCCEEEEE-ecCchHHhc-CCEE-EEEECCEEEEecC
Confidence 999999987666555433211 111122122 488888875 9999 8889998876654
No 213
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.50 E-value=1.4e-14 Score=134.28 Aligned_cols=166 Identities=18% Similarity=0.236 Sum_probs=99.5
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeee
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D 94 (350)
.++++.+.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.. .. .++ ...+...+++.+
T Consensus 41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl-----------~~p~~G~I~~~g~~-~~---~~~-~~~~~~~~tv~e 104 (264)
T PRK13546 41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGS-----------LSPTVGKVDRNGEV-SV---IAI-SAGLSGQLTGIE 104 (264)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCceEEEECCEE-eE---Eec-ccCCCCCCcHHH
Confidence 678899999999999999999999999999999 68999999988741 00 000 001111223333
Q ss_pred eccccccc--ccCccccc---hHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHH
Q 018809 95 IAGLVRGA--HEGQGLGN---SFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAEL 154 (350)
Q Consensus 95 ~~g~~~~~--~~~~~~~~---~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el 154 (350)
+..+.... ........ .++......+ .-+.+++++ .+|+++++| ||++++|......
T Consensus 105 nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLD---EPt~gLD~~~~~~ 181 (264)
T PRK13546 105 NIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVID---EALSVGDQTFAQK 181 (264)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEe---CccccCCHHHHHH
Confidence 22111000 00000000 0000000000 014456666 799999999 9999999987655
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 155 RLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 155 ~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+...+..+. +....+... +|+...+..+|+++ .+|.+|++...++
T Consensus 182 l~~~L~~~~----~~g~tiIii-sH~~~~i~~~~d~i-~~l~~G~i~~~g~ 226 (264)
T PRK13546 182 CLDKIYEFK----EQNKTIFFV-SHNLGQVRQFCTKI-AWIEGGKLKDYGE 226 (264)
T ss_pred HHHHHHHHH----HCCCEEEEE-cCCHHHHHHHcCEE-EEEECCEEEEeCC
Confidence 554433221 111111122 49999999999999 8889998875544
No 214
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.50 E-value=7.5e-15 Score=133.63 Aligned_cols=169 Identities=15% Similarity=0.171 Sum_probs=103.5
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKSAV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~~~ 86 (350)
-.+++..+.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++... .. .|.++...
T Consensus 17 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~ 85 (236)
T cd03253 17 LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF-----------YDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTV 85 (236)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCCh
Confidence 3677889999999999999999999999999999 579999999998765321 11 22232211
Q ss_pred CcceeeeeecccccccccCccc--------cchHHHHH---------------H-HHHHHHHHHhhc-CCCceeeecCCC
Q 018809 87 PAFLEIHDIAGLVRGAHEGQGL--------GNSFLSHI---------------R-AVDGIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~~~~~--------~~~~l~~l---------------~-~~d~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
....++.|+..+.........+ ....+..+ . ....-+.+++++ .+|+++++|
T Consensus 86 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllD--- 162 (236)
T cd03253 86 LFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLD--- 162 (236)
T ss_pred hhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---
Confidence 1123444433222110000000 00000000 0 001125577777 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
||++++|....+.+...+..+. + ...+... +|+...+.. |+++ .+|.+|+++..+
T Consensus 163 EP~~~LD~~~~~~l~~~l~~~~----~-~~tiii~-sh~~~~~~~-~d~~-~~l~~g~i~~~~ 217 (236)
T cd03253 163 EATSALDTHTEREIQAALRDVS----K-GRTTIVI-AHRLSTIVN-ADKI-IVLKDGRIVERG 217 (236)
T ss_pred CCcccCCHHHHHHHHHHHHHhc----C-CCEEEEE-cCCHHHHHh-CCEE-EEEECCEEEeeC
Confidence 9999999998765555543221 1 1122122 388888854 9998 888889876544
No 215
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.50 E-value=1.1e-14 Score=133.90 Aligned_cols=173 Identities=19% Similarity=0.229 Sum_probs=104.1
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcc-----hhHH---------Hh-
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-----FEWL---------CQ- 78 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~-----l~~l---------~~- 78 (350)
-.+++.++++|++++|+|+||||||||+++|+|. .+|.+|.|.++|.+ +... ..
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~ 87 (253)
T TIGR02323 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR-----------LAPDHGTATYIMRSGAELELYQLSEAERRRLMRTE 87 (253)
T ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEEecccccccccccCCHHHHHHhhhcc
Confidence 3678899999999999999999999999999999 58999999998765 3211 00
Q ss_pred -hccCCCC---CCcceeeeeecccc----cc-cc-cCccccchHHHHHHHH---------------HHHHHHHhhc-CCC
Q 018809 79 -LFKPKSA---VPAFLEIHDIAGLV----RG-AH-EGQGLGNSFLSHIRAV---------------DGIFHVLRAF-EDP 132 (350)
Q Consensus 79 -~~~~~~~---~~~~l~~~D~~g~~----~~-~~-~~~~~~~~~l~~l~~~---------------d~~l~vv~a~-~~~ 132 (350)
.|.++.. ....+++.++.... .. .. ........+++.+... ..-+.+++++ .+|
T Consensus 88 i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p 167 (253)
T TIGR02323 88 WGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRP 167 (253)
T ss_pred eEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCC
Confidence 1212211 11111111111100 00 00 0000001111111110 0115577777 899
Q ss_pred ceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 133 DIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 133 ~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+++++| ||++++|....+.+...+..+.+ +....+... +|+...+..+|+++ ..|.+|+++..++
T Consensus 168 ~vlllD---EP~~~LD~~~~~~l~~~l~~~~~---~~~~tii~v-sH~~~~~~~~~d~~-~~l~~G~i~~~~~ 232 (253)
T TIGR02323 168 RLVFMD---EPTGGLDVSVQARLLDLLRGLVR---DLGLAVIIV-THDLGVARLLAQRL-LVMQQGRVVESGL 232 (253)
T ss_pred CEEEEc---CCCccCCHHHHHHHHHHHHHHHH---hcCCEEEEE-eCCHHHHHHhcCEE-EEEECCEEEEECC
Confidence 999999 99999999997666555433211 111122122 49999999999998 8889998775543
No 216
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.50 E-value=4.1e-15 Score=141.98 Aligned_cols=174 Identities=16% Similarity=0.242 Sum_probs=106.7
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc---ceEEEeCCcchhHHH----------h-
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDERFEWLC----------Q- 78 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~---~G~i~~~~~~l~~l~----------~- 78 (350)
.-++++.+|.+|+++||+|+||||||||+++|+|+ .+|. +|.|.++|+++..+. .
T Consensus 31 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl-----------~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i 99 (330)
T PRK09473 31 AVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGL-----------LAANGRIGGSATFNGREILNLPEKELNKLRAEQI 99 (330)
T ss_pred EEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcC-----------CCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCE
Confidence 45788999999999999999999999999999999 4554 899999997653211 0
Q ss_pred hccCCC---CCCcceeeeeecc----cccccccC--ccccchHHHHHHHH---H--------------HHHHHHhhc-CC
Q 018809 79 LFKPKS---AVPAFLEIHDIAG----LVRGAHEG--QGLGNSFLSHIRAV---D--------------GIFHVLRAF-ED 131 (350)
Q Consensus 79 ~~~~~~---~~~~~l~~~D~~g----~~~~~~~~--~~~~~~~l~~l~~~---d--------------~~l~vv~a~-~~ 131 (350)
.|.+|. .+...+++.+... ........ .......++.++.. + --+.+++++ .+
T Consensus 100 ~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~ 179 (330)
T PRK09473 100 SMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCR 179 (330)
T ss_pred EEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 111121 1111222222110 10000000 00001111111100 0 014567777 89
Q ss_pred CceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 132 PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 132 ~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|+++++| ||++.+|......++..+..+.+. ....+... +|++..+..++|++ .+|..|+++..++
T Consensus 180 P~llilD---EPts~LD~~~~~~i~~lL~~l~~~---~g~til~i-THdl~~~~~~~Dri-~vm~~G~ive~g~ 245 (330)
T PRK09473 180 PKLLIAD---EPTTALDVTVQAQIMTLLNELKRE---FNTAIIMI-THDLGVVAGICDKV-LVMYAGRTMEYGN 245 (330)
T ss_pred CCEEEEe---CCCccCCHHHHHHHHHHHHHHHHH---cCCEEEEE-ECCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9999999 999999999987666655443321 11112122 49999999999999 8999999887654
No 217
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=9.3e-15 Score=134.34 Aligned_cols=177 Identities=14% Similarity=0.188 Sum_probs=105.9
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~ 83 (350)
.-.+++.++++|++++|+|+||||||||+++|+|.... +| ..|..|.|.++|+++.. ... .|.++
T Consensus 19 ~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~p---~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q 92 (251)
T PRK14251 19 ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDD---IE---NIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQ 92 (251)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccc---cc---CCCcceEEEECCEEcccccchHHHhhccEEEEec
Confidence 34678899999999999999999999999999998310 00 01478999999875421 111 12222
Q ss_pred CCCCcceeeeeeccccccccc--Ccc-ccchHHHHHHHHH---------------------HHHHHHhhc-CCCceeeec
Q 018809 84 SAVPAFLEIHDIAGLVRGAHE--GQG-LGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 84 ~~~~~~l~~~D~~g~~~~~~~--~~~-~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~vl~ld 138 (350)
.......++.|+..+...... ... ........++..+ .-+.+++++ .+|+++++|
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllD 172 (251)
T PRK14251 93 QPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLD 172 (251)
T ss_pred CCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 211111344443322110000 000 0000111111111 115577777 899999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+ ...+... +|+...+.++|+++ ..|++|++...++
T Consensus 173 ---EP~~~LD~~~~~~l~~~l~~~~~-----~~tiiii-sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 229 (251)
T PRK14251 173 ---EPTSALDPISSSEIEETLMELKH-----QYTFIMV-THNLQQAGRISDQT-AFLMNGDLIEAGP 229 (251)
T ss_pred ---CCCccCCHHHHHHHHHHHHHHHc-----CCeEEEE-ECCHHHHHhhcCEE-EEEECCEEEEeCC
Confidence 99999999987666655443311 1122122 49999999999999 8889998875543
No 218
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.50 E-value=1.5e-14 Score=145.57 Aligned_cols=172 Identities=15% Similarity=0.198 Sum_probs=108.0
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH------Hh--hccCCC-
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQ--LFKPKS- 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l------~~--~~~~~~- 84 (350)
-.+++.++.+|+++||+|+||||||||+++|+|. .+|.+|.|.++|+++... .. .|.++.
T Consensus 14 l~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 82 (491)
T PRK10982 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGI-----------YQKDSGSILFQGKEIDFKSSKEALENGISMVHQEL 82 (491)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCceEEEECCEECCCCCHHHHHhCCEEEEeccc
Confidence 4678899999999999999999999999999999 689999999998754211 11 122222
Q ss_pred CCCcceeeeeecccccccccCc-----cccchHHHHHHHHH-----------------HHHHHHhhc-CCCceeeecCCC
Q 018809 85 AVPAFLEIHDIAGLVRGAHEGQ-----GLGNSFLSHIRAVD-----------------GIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~~-----~~~~~~l~~l~~~d-----------------~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
.....+++.|+..+......+. ....++.+.+...+ .-+.+++++ .+|+++++|
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD--- 159 (491)
T PRK10982 83 NLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD--- 159 (491)
T ss_pred ccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe---
Confidence 1222344444433221100000 00000001111100 115577777 799999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+ ....+... +|+...+..+||++ .+|.+|+++..++
T Consensus 160 EPt~~LD~~~~~~l~~~l~~l~~----~g~tvii~-tH~~~~~~~~~d~i-~~l~~G~i~~~~~ 217 (491)
T PRK10982 160 EPTSSLTEKEVNHLFTIIRKLKE----RGCGIVYI-SHKMEEIFQLCDEI-TILRDGQWIATQP 217 (491)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEE-ecCHHHHHHhCCEE-EEEECCEEEeecC
Confidence 99999999987666555433211 11112122 49999999999999 8999999876544
No 219
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.50 E-value=3.6e-14 Score=126.45 Aligned_cols=133 Identities=13% Similarity=0.123 Sum_probs=83.2
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h-hccCC-CCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q-LFKPK-SAV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~-~~~~~-~~~ 86 (350)
-.++++++++|++++|+|+||||||||+++|+|. .+|.+|.|.++|..+.... . .|.++ ...
T Consensus 17 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~ 85 (204)
T PRK13538 17 FSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL-----------ARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGI 85 (204)
T ss_pred EecceEEECCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEcccchHHhhhheEEeCCcccc
Confidence 4678899999999999999999999999999999 5899999999987643211 1 11111 112
Q ss_pred Ccceeeeeeccccccccc--CccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCchhHH
Q 018809 87 PAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~--~~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (350)
...+++.|...+....+. .......+++.+...+ .-+.+++++ .+|+++++| ||++++|.
T Consensus 86 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~ 162 (204)
T PRK13538 86 KTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILD---EPFTAIDK 162 (204)
T ss_pred CcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCCccCCH
Confidence 222344444333211110 0000111111111111 115577777 899999999 99999999
Q ss_pred HHHHHHHHHHH
Q 018809 150 ISAELRLKDIE 160 (350)
Q Consensus 150 ~~~el~~~~l~ 160 (350)
...+.+...+.
T Consensus 163 ~~~~~l~~~l~ 173 (204)
T PRK13538 163 QGVARLEALLA 173 (204)
T ss_pred HHHHHHHHHHH
Confidence 98766555443
No 220
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.50 E-value=7.7e-15 Score=136.22 Aligned_cols=174 Identities=16% Similarity=0.177 Sum_probs=106.2
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCCC-
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPKS- 84 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~~- 84 (350)
.+++.++++|++++|+|+||||||||+++|+|.... ....|.+|.|.++|+++.. +.. .|.++.
T Consensus 36 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 109 (267)
T PRK14235 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDT------IDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKP 109 (267)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccc------ccCCCCceEEEECCEECcccccchHHHhhceEEEecCC
Confidence 678899999999999999999999999999998310 0002489999999876531 111 122222
Q ss_pred CCCcceeeeeecccccccc----cCccccchHHHHHHHHHH---------------------HHHHHhhc-CCCceeeec
Q 018809 85 AVPAFLEIHDIAGLVRGAH----EGQGLGNSFLSHIRAVDG---------------------IFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~----~~~~~~~~~l~~l~~~d~---------------------~l~vv~a~-~~~~vl~ld 138 (350)
.... .++.|+..+..... ............++..++ -+.+++++ .+|+++++|
T Consensus 110 ~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 188 (267)
T PRK14235 110 NPFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMD 188 (267)
T ss_pred CCCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 1111 24444443221000 000000011111111110 15577777 899999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+.+ ...+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 189 ---EPt~~LD~~~~~~l~~~L~~l~~-----~~tiiiv-tH~~~~~~~~~d~v-~~l~~G~i~~~g~ 245 (267)
T PRK14235 189 ---EPCSALDPIATAKVEELIDELRQ-----NYTIVIV-THSMQQAARVSQRT-AFFHLGNLVEVGD 245 (267)
T ss_pred ---CCCcCCCHHHHHHHHHHHHHHhc-----CCeEEEE-EcCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 99999999987666655443311 1122222 49999999999999 8889998875543
No 221
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.50 E-value=4.4e-14 Score=125.51 Aligned_cols=134 Identities=15% Similarity=0.183 Sum_probs=83.4
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh-hccCCC-
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ-LFKPKS- 84 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~-~~~~~~- 84 (350)
+.-.++++.+.+|+++||+|+||||||||+++|+|. .+|+.|.|.++|.++... .. .|.++.
T Consensus 15 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~~ 83 (200)
T PRK13540 15 PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL-----------LNPEKGEILFERQSIKKDLCTYQKQLCFVGHRS 83 (200)
T ss_pred eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeeEEECCCccccCHHHHHhheEEecccc
Confidence 344778899999999999999999999999999999 589999999998765321 11 122222
Q ss_pred CCCcceeeeeecccccccccCccccchHHHHHHH--------------HHHHHHHHhhc-CCCceeeecCCCCCCchhHH
Q 018809 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~--------------~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (350)
..+...++.|+..+..............++.+.. ...-+.+++++ .+|+++++| ||++++|.
T Consensus 84 ~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilD---EP~~~LD~ 160 (200)
T PRK13540 84 GINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLD---EPLVALDE 160 (200)
T ss_pred ccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCCcccCH
Confidence 1222344444433221000000000111111000 01115677777 899999999 99999999
Q ss_pred HHHHHHHHHH
Q 018809 150 ISAELRLKDI 159 (350)
Q Consensus 150 ~~~el~~~~l 159 (350)
...+.+...+
T Consensus 161 ~~~~~l~~~l 170 (200)
T PRK13540 161 LSLLTIITKI 170 (200)
T ss_pred HHHHHHHHHH
Confidence 8875555543
No 222
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.49 E-value=2.1e-14 Score=142.18 Aligned_cols=177 Identities=22% Similarity=0.299 Sum_probs=112.3
Q ss_pred CCCCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcch-------hHHH---h-
Q 018809 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF-------EWLC---Q- 78 (350)
Q Consensus 10 ~~~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l-------~~l~---~- 78 (350)
+-++-+.+++.+++|+++||||.+|||||||.++|+|+ ..|.+|.|.+.|.++ ..+. +
T Consensus 303 ~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL-----------~~P~~G~i~~~g~~~~~~~~~~~~~r~~~Qm 371 (539)
T COG1123 303 EVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL-----------LPPSSGSIIFDGQDLDLTGGELRRLRRRIQM 371 (539)
T ss_pred ceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEEeCcccccccchhhhhhhheEE
Confidence 34566899999999999999999999999999999999 689999999988651 1110 1
Q ss_pred hccC-CCCCCcceeeeeecccccccccCcc---ccchHHHHHHHHHH----H--------------HHHHhhc-CCCcee
Q 018809 79 LFKP-KSAVPAFLEIHDIAGLVRGAHEGQG---LGNSFLSHIRAVDG----I--------------FHVLRAF-EDPDII 135 (350)
Q Consensus 79 ~~~~-~~~~~~~l~~~D~~g~~~~~~~~~~---~~~~~l~~l~~~d~----~--------------l~vv~a~-~~~~vl 135 (350)
+|+. .......+++.+...-.-..+.... ...+....+..+++ + +.++||+ .+|+++
T Consensus 372 vFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~ll 451 (539)
T COG1123 372 VFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLL 451 (539)
T ss_pred EEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEE
Confidence 1221 1122222333332211111111000 00001000111100 0 5577887 799999
Q ss_pred eecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 136 ~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++| ||++.+|+.....+...+..+++.+. -...+- +|++..+..+|||| .+|..|+++..|+
T Consensus 452 i~D---Ep~SaLDvsvqa~VlnLl~~lq~e~g---~t~lfI-SHDl~vV~~i~drv-~vm~~G~iVE~G~ 513 (539)
T COG1123 452 ILD---EPVSALDVSVQAQVLNLLKDLQEELG---LTYLFI-SHDLAVVRYIADRV-AVMYDGRIVEEGP 513 (539)
T ss_pred Eec---CCccccCHHHHHHHHHHHHHHHHHhC---CEEEEE-eCCHHHHHhhCceE-EEEECCeEEEeCC
Confidence 999 99999999988766666555544331 111111 39999999999999 9999999987763
No 223
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=2e-14 Score=132.30 Aligned_cols=177 Identities=15% Similarity=0.161 Sum_probs=107.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~ 83 (350)
.-.+++.++++|++++|+|+||||||||+++|+|.... ....|++|.|.++|..+.. +.. .|.++
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q 92 (252)
T PRK14256 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDL------VPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQ 92 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccC------CCCCCCceEEEECCEEcccccCChHHhhccEEEEec
Confidence 44678899999999999999999999999999998310 0001368999999876521 111 12222
Q ss_pred C-CCCcceeeeeeccccccccc---CccccchHHHHHHHHH-------H--------------HHHHHhhc-CCCceeee
Q 018809 84 S-AVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVD-------G--------------IFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 84 ~-~~~~~l~~~D~~g~~~~~~~---~~~~~~~~l~~l~~~d-------~--------------~l~vv~a~-~~~~vl~l 137 (350)
. .....+++.++..+...... ...........++..+ . -+.+++++ .+|+++++
T Consensus 93 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 172 (252)
T PRK14256 93 KPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILM 172 (252)
T ss_pred CCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2 22222344444322110000 0000001111111111 0 15577777 89999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++++|......+...+..+.+ ...+... +|+...+..+||++ .+|.+|++...++
T Consensus 173 D---EP~~gLD~~~~~~l~~~l~~~~~-----~~tiiiv-sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 230 (252)
T PRK14256 173 D---EPASALDPISTLKIEELIEELKE-----KYTIIIV-THNMQQAARVSDYT-AFFYMGDLVECGE 230 (252)
T ss_pred c---CCcccCCHHHHHHHHHHHHHHHh-----CCcEEEE-ECCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 9 99999999987666665544321 1122222 49999999999999 8889998776543
No 224
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.2e-14 Score=134.86 Aligned_cols=176 Identities=15% Similarity=0.152 Sum_probs=105.7
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPKS 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~~ 84 (350)
-..++.++.+|++++|+|+||||||||+++|+|.... ....|++|.|.++|..+.. ... .|.++.
T Consensus 37 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 110 (268)
T PRK14248 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDL------IPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQK 110 (268)
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccc------cCCCCCceEEEECCEEcccccccHHHHhccEEEEecC
Confidence 3677889999999999999999999999999997200 0002689999998876531 111 122222
Q ss_pred CCCcceeeeeeccccccccc--Ccc-ccchHHHHHHHH---------------------HHHHHHHhhc-CCCceeeecC
Q 018809 85 AVPAFLEIHDIAGLVRGAHE--GQG-LGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~--~~~-~~~~~l~~l~~~---------------------d~~l~vv~a~-~~~~vl~ld~ 139 (350)
......++.|+..+...... ... ........+... ..-+.+++++ .+|+++++|
T Consensus 111 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD- 189 (268)
T PRK14248 111 PNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLD- 189 (268)
T ss_pred CccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEc-
Confidence 11111244443322110000 000 000001111100 0115577777 899999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+ ...+... +|+...+..+|+++ .+|++|+++..++
T Consensus 190 --EPt~~LD~~~~~~l~~~l~~~~~-----~~tiii~-tH~~~~~~~~~d~v-~~l~~G~i~~~~~ 246 (268)
T PRK14248 190 --EPASALDPISNAKIEELITELKE-----EYSIIIV-THNMQQALRVSDRT-AFFLNGDLVEYDQ 246 (268)
T ss_pred --CCCcccCHHHHHHHHHHHHHHhc-----CCEEEEE-EeCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999987666555443311 1122222 49999999999999 8899998876543
No 225
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=8.4e-15 Score=147.86 Aligned_cols=174 Identities=13% Similarity=0.168 Sum_probs=109.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC--cceEEEeCCcchhH-----H-Hh--hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP--NEARVNIPDERFEW-----L-CQ--LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p--~~G~i~~~~~~l~~-----l-~~--~~~~ 82 (350)
.-.+++..+.+|++++|+||||||||||+++|+|. .+| ++|.|.++|.++.. . .. .|.+
T Consensus 20 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 88 (506)
T PRK13549 20 ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV-----------YPHGTYEGEIIFEGEELQASNIRDTERAGIAIIH 88 (506)
T ss_pred eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEE
Confidence 44788999999999999999999999999999998 354 79999999865421 1 11 1222
Q ss_pred CC-CCCcceeeeeeccccccccc----C-cc---ccchHHHHHHHH--------------HHHHHHHhhc-CCCceeeec
Q 018809 83 KS-AVPAFLEIHDIAGLVRGAHE----G-QG---LGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 83 ~~-~~~~~l~~~D~~g~~~~~~~----~-~~---~~~~~l~~l~~~--------------d~~l~vv~a~-~~~~vl~ld 138 (350)
+. ..+..+++.|+..+...... . .. ....+++.+... ..-+.+++++ .+|+++++|
T Consensus 89 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLD 168 (506)
T PRK13549 89 QELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILD 168 (506)
T ss_pred eccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 22 22223455554433211000 0 00 000111111100 0115677777 899999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
||++.+|......+...+..+.+ ....+... +|+...+..+||++ .+|.+|+++..++.
T Consensus 169 ---EPt~~LD~~~~~~l~~~l~~l~~----~~~tvi~~-tH~~~~~~~~~d~v-~~l~~G~i~~~~~~ 227 (506)
T PRK13549 169 ---EPTASLTESETAVLLDIIRDLKA----HGIACIYI-SHKLNEVKAISDTI-CVIRDGRHIGTRPA 227 (506)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHHHH----CCCEEEEE-eCcHHHHHHhcCEE-EEEECCEEeeeccc
Confidence 99999999987666655443321 11122122 49999999999999 88999998765443
No 226
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.49 E-value=6.5e-15 Score=135.08 Aligned_cols=157 Identities=18% Similarity=0.252 Sum_probs=93.0
Q ss_pred cccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecc
Q 018809 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAG 97 (350)
Q Consensus 18 ~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g 97 (350)
.+.+.+|++++|+|+||||||||+++|+|. .+|++|.|.++|..+.++.+... .....++.|+..
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~-----------~~p~~G~i~~~g~~i~~~~q~~~----~~~~~tv~e~l~ 83 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGV-----------LKPDEGDIEIELDTVSYKPQYIK----ADYEGTVRDLLS 83 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCCCeEEECCceEEEeccccc----CCCCCCHHHHHH
Confidence 345678999999999999999999999999 68999999998864433222110 011223333321
Q ss_pred cccccc-cCccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHH
Q 018809 98 LVRGAH-EGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEF 161 (350)
Q Consensus 98 ~~~~~~-~~~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~ 161 (350)
...... ........+++.+...+ .-+.+++++ .+|+++++| ||++.+|....+.+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllD---EPt~~LD~~~~~~l~~~l~~ 160 (246)
T cd03237 84 SITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLD---EPSAYLDVEQRLMASKVIRR 160 (246)
T ss_pred HHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHHHHHHHH
Confidence 110000 00000011111111100 115567777 899999999 99999999987655554433
Q ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhc
Q 018809 162 MERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD 197 (350)
Q Consensus 162 l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~ 197 (350)
+.+. ....+... +|+...+..+||++ .+|..
T Consensus 161 ~~~~---~~~tiiiv-sHd~~~~~~~~d~i-~~l~~ 191 (246)
T cd03237 161 FAEN---NEKTAFVV-EHDIIMIDYLADRL-IVFEG 191 (246)
T ss_pred HHHh---cCCEEEEE-eCCHHHHHHhCCEE-EEEcC
Confidence 2211 11112122 49999999999998 66653
No 227
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.3e-14 Score=133.23 Aligned_cols=178 Identities=15% Similarity=0.215 Sum_probs=107.4
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKP 82 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~ 82 (350)
+.-..+++++.+|++++|+|+||||||||+++|+|..... | ..|.+|.|.++|.++.. ... .|.+
T Consensus 17 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~---~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~ 90 (250)
T PRK14262 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHI---P---GFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVF 90 (250)
T ss_pred eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCC---C---CCCcceEEEECCEEcccchhhHHHhhhhEEEEe
Confidence 3446788999999999999999999999999999983100 0 01378999999865421 111 1222
Q ss_pred CCCCCcceeeeeecccccccccC--c-cccchHHHHHHHH---------------------HHHHHHHhhc-CCCceeee
Q 018809 83 KSAVPAFLEIHDIAGLVRGAHEG--Q-GLGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 83 ~~~~~~~l~~~D~~g~~~~~~~~--~-~~~~~~l~~l~~~---------------------d~~l~vv~a~-~~~~vl~l 137 (350)
+.......++.|+..+....... . .........+... ..-+.+++++ .+|+++++
T Consensus 91 q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llll 170 (250)
T PRK14262 91 QKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILL 170 (250)
T ss_pred cCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEE
Confidence 22111114444544332111000 0 0000011111110 0115677887 89999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++++|......+...+..+.+ ...+... +|+...+..++|++ .+|.+|++...++
T Consensus 171 D---EP~~~LD~~~~~~l~~~l~~~~~-----~~tili~-sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 228 (250)
T PRK14262 171 D---EPTSALDPIATQRIEKLLEELSE-----NYTIVIV-THNIGQAIRIADYI-AFMYRGELIEYGP 228 (250)
T ss_pred e---CCccccCHHHHHHHHHHHHHHhc-----CcEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 9 99999999987666555443211 1122122 49999999999999 8889998875544
No 228
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.49 E-value=8.5e-15 Score=132.90 Aligned_cols=162 Identities=22% Similarity=0.271 Sum_probs=112.2
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCccee
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLE 91 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~ 91 (350)
.+-+.++++++.|+.+||||.+|||||||-++|+|+ .+|++|.|.+.|.++..+... .....-.+
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L-----------~~pt~G~i~f~g~~i~~~~~~----~~~~~v~e 91 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL-----------EEPTSGEILFEGKDITKLSKE----ERRERVLE 91 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcC-----------cCCCCceEEEcCcchhhcchh----HHHHHHHH
Confidence 456889999999999999999999999999999999 699999999999875433200 00000123
Q ss_pred eeeeccccc-----ccccCccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 018809 92 IHDIAGLVR-----GAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRI 166 (350)
Q Consensus 92 ~~D~~g~~~-----~~~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~ 166 (350)
+++.+|+.. .+++ +..-..+++..|.++.. +|++++.| ||++.+|+--+..++..+..+++..
T Consensus 92 lL~~Vgl~~~~~~ryPhe---lSGGQrQRi~IARALal------~P~liV~D---EpvSaLDvSiqaqIlnLL~dlq~~~ 159 (268)
T COG4608 92 LLEKVGLPEEFLYRYPHE---LSGGQRQRIGIARALAL------NPKLIVAD---EPVSALDVSVQAQILNLLKDLQEEL 159 (268)
T ss_pred HHHHhCCCHHHhhcCCcc---cCchhhhhHHHHHHHhh------CCcEEEec---CchhhcchhHHHHHHHHHHHHHHHh
Confidence 344444332 2222 22222355555544444 99999999 9999999988777776665554433
Q ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 167 EDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 167 ~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+ -...+- +|++..+..++|++ .+|..|+++-.++
T Consensus 160 ~---lt~lFI-sHDL~vv~~isdri-~VMy~G~iVE~g~ 193 (268)
T COG4608 160 G---LTYLFI-SHDLSVVRYISDRI-AVMYLGKIVEIGP 193 (268)
T ss_pred C---CeEEEE-EEEHHhhhhhcccE-EEEecCceeEecC
Confidence 2 111111 39999999999999 9999999886554
No 229
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=1.6e-14 Score=124.45 Aligned_cols=164 Identities=16% Similarity=0.262 Sum_probs=110.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH----hhccCCCCCCc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----QLFKPKSAVPA 88 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~----~~~~~~~~~~~ 88 (350)
.-..++..+.+|+.++++||+|||||||+|.++|. ..|..|.|.++|+++..-. .+|+.....|
T Consensus 20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf-----------~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlP- 87 (259)
T COG4525 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF-----------VTPSRGSIQLNGRRIEGPGAERGVVFQNEALLP- 87 (259)
T ss_pred hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcC-----------cCcccceEEECCEeccCCCccceeEeccCccch-
Confidence 44678888999999999999999999999999999 7999999999998765422 2455555555
Q ss_pred ceeeeeecccccccccC-----ccccchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecCCCCCCchhH
Q 018809 89 FLEIHDIAGLVRGAHEG-----QGLGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (350)
Q Consensus 89 ~l~~~D~~g~~~~~~~~-----~~~~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (350)
.++++|+..++-....- .....+++..+...+.- +-++||+ -+|+.+++| ||+..+|
T Consensus 88 Wl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLD---EPfgAlD 164 (259)
T COG4525 88 WLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLD---EPFGALD 164 (259)
T ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeec---CchhhHH
Confidence 67888888775322110 01111122111111110 4477888 799999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhh
Q 018809 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ 196 (350)
Q Consensus 149 ~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~ 196 (350)
....|.....+ -..|....+.+.. .+|+.++..-+.+++ .+|.
T Consensus 165 a~tRe~mQelL---ldlw~~tgk~~ll-iTH~ieEAlflatrL-vvls 207 (259)
T COG4525 165 ALTREQMQELL---LDLWQETGKQVLL-ITHDIEEALFLATRL-VVLS 207 (259)
T ss_pred HHHHHHHHHHH---HHHHHHhCCeEEE-EeccHHHHHhhhhee-EEec
Confidence 99876665543 2334333222211 249999888888888 5554
No 230
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.49 E-value=3.8e-14 Score=124.84 Aligned_cols=134 Identities=17% Similarity=0.138 Sum_probs=82.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchh-------HHHh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-------WLCQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~-------~l~~--~~~~~ 83 (350)
.-+++++++.+|+++||+|+||||||||+++|+|. .+|++|.|.++|.++. .... .|.++
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 75 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGL-----------LRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQ 75 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceeEEECCEEccccccchHHHHhhEEEEec
Confidence 34678899999999999999999999999999999 5899999999886542 1111 12232
Q ss_pred CC--CCcceeeeeeccccccccc-C-cc---ccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCC
Q 018809 84 SA--VPAFLEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 84 ~~--~~~~l~~~D~~g~~~~~~~-~-~~---~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
.. .....++.|+..+...... . .. .....++.+...+ .-+.+++++ .+|+++++|
T Consensus 76 ~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD--- 152 (190)
T TIGR01166 76 DPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLD--- 152 (190)
T ss_pred ChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---
Confidence 21 1112344444332110000 0 00 0001111111111 115677777 899999999
Q ss_pred CCCchhHHHHHHHHHHHHH
Q 018809 142 DPVRDLEVISAELRLKDIE 160 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~ 160 (350)
||++++|....+.+...+.
T Consensus 153 EPt~~LD~~~~~~~~~~l~ 171 (190)
T TIGR01166 153 EPTAGLDPAGREQMLAILR 171 (190)
T ss_pred CCcccCCHHHHHHHHHHHH
Confidence 9999999988765555443
No 231
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=7e-15 Score=148.44 Aligned_cols=174 Identities=14% Similarity=0.115 Sum_probs=109.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC-CcceEEEeCCcchhH------HH--hhccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-PNEARVNIPDERFEW------LC--QLFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~-p~~G~i~~~~~~l~~------l~--~~~~~~ 83 (350)
.-.+++..+++|+++||+|+||||||||+++|+|. .+ |++|.|.++|+++.. .. -.|.++
T Consensus 277 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-----------~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 345 (506)
T PRK13549 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGA-----------YPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPE 345 (506)
T ss_pred cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCC-----------CCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCc
Confidence 34678899999999999999999999999999999 46 589999998865421 11 123233
Q ss_pred C----CCCcceeeeeecccccc--ccc----Cc----cccchHHHHHHHH---------------HHHHHHHhhc-CCCc
Q 018809 84 S----AVPAFLEIHDIAGLVRG--AHE----GQ----GLGNSFLSHIRAV---------------DGIFHVLRAF-EDPD 133 (350)
Q Consensus 84 ~----~~~~~l~~~D~~g~~~~--~~~----~~----~~~~~~l~~l~~~---------------d~~l~vv~a~-~~~~ 133 (350)
. .....+++.|+..+... ... .. .....+++.+... ..-+.+++++ .+|+
T Consensus 346 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~ 425 (506)
T PRK13549 346 DRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPK 425 (506)
T ss_pred chhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCC
Confidence 2 12233455554432110 000 00 0001111111110 0115677777 7999
Q ss_pred eeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 134 vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
++++| ||++++|....+.+...+..+.+ ....+... +|+...+..+||++ .+|.+|+++..++.
T Consensus 426 lllLD---EPt~~LD~~~~~~l~~~l~~l~~----~g~tvi~~-sHd~~~~~~~~d~v-~~l~~G~i~~~~~~ 489 (506)
T PRK13549 426 ILILD---EPTRGIDVGAKYEIYKLINQLVQ----QGVAIIVI-SSELPEVLGLSDRV-LVMHEGKLKGDLIN 489 (506)
T ss_pred EEEEc---CCCCCcCHhHHHHHHHHHHHHHH----CCCEEEEE-CCCHHHHHHhCCEE-EEEECCEEEEEecc
Confidence 99999 99999999997666665443321 11122122 49999999999999 88999998765443
No 232
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.49 E-value=5e-14 Score=124.67 Aligned_cols=129 Identities=12% Similarity=0.147 Sum_probs=79.6
Q ss_pred ccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh---hccCCC-CCCcceee
Q 018809 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ---LFKPKS-AVPAFLEI 92 (350)
Q Consensus 17 ~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~---~~~~~~-~~~~~l~~ 92 (350)
+++++++|++++|+|+||||||||+++|+|. .+|++|.+.++|.++..... .|.++. ......++
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv 87 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGI-----------MQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTV 87 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCH
Confidence 7889999999999999999999999999999 58999999999876533211 122221 12222344
Q ss_pred eeecccccccccCccccchHHHHHHH--------------HHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHH
Q 018809 93 HDIAGLVRGAHEGQGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLK 157 (350)
Q Consensus 93 ~D~~g~~~~~~~~~~~~~~~l~~l~~--------------~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~ 157 (350)
.|...+.............+++.+.. ....+.+++++ .+|+++++| ||++++|....+.+..
T Consensus 88 ~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllD---EP~~~LD~~~~~~l~~ 164 (195)
T PRK13541 88 FENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLD---EVETNLSKENRDLLNN 164 (195)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHHHHHHH
Confidence 44332211100000000000111000 01125577777 799999999 9999999988655554
Q ss_pred HH
Q 018809 158 DI 159 (350)
Q Consensus 158 ~l 159 (350)
.+
T Consensus 165 ~l 166 (195)
T PRK13541 165 LI 166 (195)
T ss_pred HH
Confidence 43
No 233
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=7.3e-15 Score=140.08 Aligned_cols=178 Identities=13% Similarity=0.150 Sum_probs=107.3
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh------hcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ------LFK 81 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~------~~~ 81 (350)
.-++++.++.+|+++||+|+||||||||+++|+|+... .-.|++|.|.++|+++..+ .. .+.
T Consensus 22 ~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~-------~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v 94 (326)
T PRK11022 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDY-------PGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMI 94 (326)
T ss_pred EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-------CCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEE
Confidence 45788999999999999999999999999999998310 0125789999999765321 11 111
Q ss_pred CCCC---CCcceeeeeec----cccccccc--CccccchHHHHHHHHH---H--------------HHHHHhhc-CCCce
Q 018809 82 PKSA---VPAFLEIHDIA----GLVRGAHE--GQGLGNSFLSHIRAVD---G--------------IFHVLRAF-EDPDI 134 (350)
Q Consensus 82 ~~~~---~~~~l~~~D~~----g~~~~~~~--~~~~~~~~l~~l~~~d---~--------------~l~vv~a~-~~~~v 134 (350)
+|.. +...+++.+.. ....+... .......+++.+...+ . -+.+++|+ .+|++
T Consensus 95 ~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~l 174 (326)
T PRK11022 95 FQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKL 174 (326)
T ss_pred ecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence 2211 11112221111 00000000 0000111111111110 0 15577777 89999
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 135 l~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+++| ||++.+|......++..+..+.+. ....+... +|++..+..++|++ .+|..|+++..++
T Consensus 175 lilD---EPts~LD~~~~~~il~lL~~l~~~---~g~til~i-THdl~~~~~~adri-~vm~~G~ive~g~ 237 (326)
T PRK11022 175 LIAD---EPTTALDVTIQAQIIELLLELQQK---ENMALVLI-THDLALVAEAAHKI-IVMYAGQVVETGK 237 (326)
T ss_pred EEEe---CCCCCCCHHHHHHHHHHHHHHHHh---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9999 999999999987666665443221 11112122 49999999999999 8999999876554
No 234
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.49 E-value=3.2e-14 Score=127.79 Aligned_cols=160 Identities=14% Similarity=0.141 Sum_probs=96.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--Hh--hccCCC-CCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--CQ--LFKPKS-AVP 87 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--~~--~~~~~~-~~~ 87 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++... .. .|.++. ..+
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~ 94 (214)
T PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL-----------LHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLK 94 (214)
T ss_pred eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC-----------CCCCCeeEEECCEEccchhhhhceEEeecCcccc
Confidence 44788899999999999999999999999999999 589999999998754321 11 122221 122
Q ss_pred cceeeeeeccccccccc--CccccchHHHHHHH--------------HHHHHHHHhhc-CCCceeeecCCCCCCchhHHH
Q 018809 88 AFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~~--~~~~~~~~l~~l~~--------------~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~ 150 (350)
..+++.|...+...... .......++..+.. ....+.+++++ .+|+++++| ||++++|..
T Consensus 95 ~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~~LD~~ 171 (214)
T PRK13543 95 ADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLD---EPYANLDLE 171 (214)
T ss_pred cCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHH
Confidence 22333333221110000 00000111111111 01125567777 799999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 018809 151 SAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRV 191 (350)
Q Consensus 151 ~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i 191 (350)
..+.+...+..+.+. ...+... +|+...+..+|+++
T Consensus 172 ~~~~l~~~l~~~~~~----~~tiii~-sH~~~~~~~~~~~i 207 (214)
T PRK13543 172 GITLVNRMISAHLRG----GGAALVT-THGAYAAPPVRTRM 207 (214)
T ss_pred HHHHHHHHHHHHHhC----CCEEEEE-ecChhhhhhhcceE
Confidence 876555544332110 1111122 49999999998876
No 235
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.49 E-value=6.1e-15 Score=148.69 Aligned_cols=172 Identities=15% Similarity=0.191 Sum_probs=108.7
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH------HHh--hccCCCC-
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LCQ--LFKPKSA- 85 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~------l~~--~~~~~~~- 85 (350)
.+++.++++|+++||+||||||||||+++|+|. .+|.+|.|.++|+++.. ... .|.++..
T Consensus 270 ~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~ 338 (501)
T PRK11288 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA-----------TRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRK 338 (501)
T ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCC-----------CcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHh
Confidence 677889999999999999999999999999999 58899999998865421 110 1223221
Q ss_pred ---CCcceeeeeecccccccc--------c---CccccchHHHHHHHH-H--------------HHHHHHhhc-CCCcee
Q 018809 86 ---VPAFLEIHDIAGLVRGAH--------E---GQGLGNSFLSHIRAV-D--------------GIFHVLRAF-EDPDII 135 (350)
Q Consensus 86 ---~~~~l~~~D~~g~~~~~~--------~---~~~~~~~~l~~l~~~-d--------------~~l~vv~a~-~~~~vl 135 (350)
....+++.+...+..... . .......++..+... + .-+.+++++ .+|+++
T Consensus 339 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~ll 418 (501)
T PRK11288 339 AEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVI 418 (501)
T ss_pred hCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEE
Confidence 222344444432211000 0 000011112221110 0 015677777 799999
Q ss_pred eecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 136 ~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
++| ||++++|....+.+...+..+.+ ....+... +|+...+..+|+++ .+|.+|+++..++.
T Consensus 419 lLD---EPt~~LD~~~~~~l~~~l~~l~~----~g~tviiv-sHd~~~~~~~~d~i-~~l~~g~i~~~~~~ 480 (501)
T PRK11288 419 LLD---EPTRGIDVGAKHEIYNVIYELAA----QGVAVLFV-SSDLPEVLGVADRI-VVMREGRIAGELAR 480 (501)
T ss_pred EEc---CCCCCCCHhHHHHHHHHHHHHHh----CCCEEEEE-CCCHHHHHhhCCEE-EEEECCEEEEEEcc
Confidence 999 99999999997666655443321 11122122 49999999999999 78899988765543
No 236
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=1.5e-14 Score=134.45 Aligned_cols=167 Identities=11% Similarity=0.133 Sum_probs=100.2
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPKS 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~~ 84 (350)
-..+++.+.+|++++|+|+||||||||+++|+|.... ....|++|.|.++|.++.. +.. .|.++.
T Consensus 29 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~------~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~ 102 (269)
T PRK14259 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDL------IEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQ 102 (269)
T ss_pred EcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc------cCCCCCceEEEECCEEcccccCCHHHHhhceEEEccC
Confidence 3678899999999999999999999999999998310 0001689999998875421 111 122222
Q ss_pred C-CCcceeeeeeccccccccc-CccccchHHHHHHHHH---------------------HHHHHHhhc-CCCceeeecCC
Q 018809 85 A-VPAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 85 ~-~~~~l~~~D~~g~~~~~~~-~~~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~vl~ld~~ 140 (350)
. ... .++.|+..+...... .........+.++..+ .-+.+++++ .+|+++++|
T Consensus 103 ~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD-- 179 (269)
T PRK14259 103 PNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMD-- 179 (269)
T ss_pred Cccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEc--
Confidence 1 111 244444332211000 0000001111111111 115577777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhc
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD 197 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~ 197 (350)
||++++|....+.+...+..+.+ ...+... +|+...+..+||++ .+|++
T Consensus 180 -EPt~gLD~~~~~~l~~~l~~~~~-----~~tiiiv-tH~~~~~~~~~d~i-~~l~~ 228 (269)
T PRK14259 180 -EPCSALDPISTLKIEETMHELKK-----NFTIVIV-THNMQQAVRVSDMT-AFFNA 228 (269)
T ss_pred -CCCccCCHHHHHHHHHHHHHHhc-----CCEEEEE-eCCHHHHHHhcCEE-EEEec
Confidence 99999999887666555433311 1122122 49999999999999 78876
No 237
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.49 E-value=7e-14 Score=124.92 Aligned_cols=133 Identities=13% Similarity=0.129 Sum_probs=82.3
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH--HH--hhccCC-CCCCc
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LC--QLFKPK-SAVPA 88 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~--l~--~~~~~~-~~~~~ 88 (350)
-.++++.+++|++++|+|+||||||||+++|+|. .+|.+|.|.++|..+.. .. ..|.++ .....
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~ 86 (207)
T PRK13539 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL-----------LPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKP 86 (207)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEeCcchhhHhhcEEecCCCcCCC
Confidence 4678899999999999999999999999999999 57899999999865321 11 112221 12222
Q ss_pred ceeeeeeccccccccc-CccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCchhHHHHH
Q 018809 89 FLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (350)
Q Consensus 89 ~l~~~D~~g~~~~~~~-~~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~ 152 (350)
..++.|...+...... .......+++.+...+ .-+.+++++ .+|+++++| ||++++|....
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD---EPt~~LD~~~~ 163 (207)
T PRK13539 87 ALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILD---EPTAALDAAAV 163 (207)
T ss_pred CCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCcccCCHHHH
Confidence 2344443322111000 0000011111111111 115577777 899999999 99999999987
Q ss_pred HHHHHHHH
Q 018809 153 ELRLKDIE 160 (350)
Q Consensus 153 el~~~~l~ 160 (350)
+.+...+.
T Consensus 164 ~~l~~~l~ 171 (207)
T PRK13539 164 ALFAELIR 171 (207)
T ss_pred HHHHHHHH
Confidence 66655543
No 238
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.49 E-value=2.6e-14 Score=143.34 Aligned_cols=160 Identities=22% Similarity=0.327 Sum_probs=101.8
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCC-cchhHHHhhccCCCCCCcceeee
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD-ERFEWLCQLFKPKSAVPAFLEIH 93 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~-~~l~~l~~~~~~~~~~~~~l~~~ 93 (350)
..++.++.+|+++||||+|||||||||++|+|. ..|++|.|..++ .++.++.+-... ....++.
T Consensus 20 ~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~-----------~~~~~G~i~~~~~~~v~~l~Q~~~~----~~~~tv~ 84 (530)
T COG0488 20 ENVSLTLNPGERIGLVGRNGAGKSTLLKILAGE-----------LEPDSGEVTRPKGLRVGYLSQEPPL----DPEKTVL 84 (530)
T ss_pred cCCcceeCCCCEEEEECCCCCCHHHHHHHHcCC-----------CcCCCCeEeecCCceEEEeCCCCCc----CCCccHH
Confidence 567888999999999999999999999999999 689999988764 233332221000 0001111
Q ss_pred eecc-------------------------------------------------------cccccccCccccchHHHHHHH
Q 018809 94 DIAG-------------------------------------------------------LVRGAHEGQGLGNSFLSHIRA 118 (350)
Q Consensus 94 D~~g-------------------------------------------------------~~~~~~~~~~~~~~~l~~l~~ 118 (350)
|.+- +......-..+..-...+
T Consensus 85 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~R--- 161 (530)
T COG0488 85 DYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRR--- 161 (530)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHH---
Confidence 1110 000000000000000111
Q ss_pred HHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhc
Q 018809 119 VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD 197 (350)
Q Consensus 119 ~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~ 197 (350)
+.+++++ .+||+++|| ||++++|+.. +.||+..+..+...+..- +|+...++.+|++| ..|+.
T Consensus 162 ----v~LA~aL~~~pDlLLLD---EPTNHLD~~~-------i~WLe~~L~~~~gtviiV-SHDR~FLd~V~t~I-~~ld~ 225 (530)
T COG0488 162 ----VALARALLEEPDLLLLD---EPTNHLDLES-------IEWLEDYLKRYPGTVIVV-SHDRYFLDNVATHI-LELDR 225 (530)
T ss_pred ----HHHHHHHhcCCCEEEEc---CCCcccCHHH-------HHHHHHHHHhCCCcEEEE-eCCHHHHHHHhhhe-EEecC
Confidence 3455555 799999999 9999999877 556777665554422122 39999999999999 88888
Q ss_pred CCcc-ccCCCCh
Q 018809 198 GKDV-RLGDWKA 208 (350)
Q Consensus 198 g~~~-~~~~~t~ 208 (350)
|+.. |.|+++.
T Consensus 226 g~l~~y~Gny~~ 237 (530)
T COG0488 226 GKLTPYKGNYSS 237 (530)
T ss_pred CceeEecCCHHH
Confidence 8765 5587764
No 239
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=2.9e-15 Score=139.84 Aligned_cols=173 Identities=16% Similarity=0.123 Sum_probs=106.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~--~~~~~~~ 85 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++.. +.. .|.++..
T Consensus 22 ~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 90 (277)
T PRK13642 22 QLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL-----------FEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNP 90 (277)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCCEEEECCEECCcCCHHHHhcceEEEEECH
Confidence 45788999999999999999999999999999999 58999999999876432 111 1222221
Q ss_pred --CCcceeeeeeccccccccc--CccccchHHHHHHHH---H--------------HHHHHHhhc-CCCceeeecCCCCC
Q 018809 86 --VPAFLEIHDIAGLVRGAHE--GQGLGNSFLSHIRAV---D--------------GIFHVLRAF-EDPDIIHVDDSVDP 143 (350)
Q Consensus 86 --~~~~l~~~D~~g~~~~~~~--~~~~~~~~l~~l~~~---d--------------~~l~vv~a~-~~~~vl~ld~~~eP 143 (350)
.....++.|...+...... ...........+... + .-+.+++++ .+|+++++| ||
T Consensus 91 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllD---EP 167 (277)
T PRK13642 91 DNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILD---ES 167 (277)
T ss_pred HHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CC
Confidence 1112344444332111000 000000011111111 1 115677777 899999999 99
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 144 ~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++++|......+...+..+.+ .....+... +|+...+. .||++ .+|.+|+.+..++
T Consensus 168 t~~LD~~~~~~l~~~l~~l~~---~~g~tiil~-sH~~~~~~-~~d~i-~~l~~G~i~~~g~ 223 (277)
T PRK13642 168 TSMLDPTGRQEIMRVIHEIKE---KYQLTVLSI-THDLDEAA-SSDRI-LVMKAGEIIKEAA 223 (277)
T ss_pred cccCCHHHHHHHHHHHHHHHH---hcCCEEEEE-eCCHHHHH-hCCEE-EEEECCEEEEeCC
Confidence 999999997666554432211 111112122 49999886 59999 8899998876554
No 240
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1.2e-14 Score=134.21 Aligned_cols=177 Identities=17% Similarity=0.207 Sum_probs=105.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~ 83 (350)
.-.++++++.+|++++|+|+||||||||+++|+|.... .| ..|++|.|.++|.++.. +.. .|.++
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~---~~---~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q 92 (258)
T PRK14241 19 AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEV---IP---GARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQ 92 (258)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCc---cc---CCCcceEEEECCEeccccccChHHHhcceEEEcc
Confidence 34678899999999999999999999999999998310 00 01379999999875421 111 12222
Q ss_pred C-CCCcceeeeeeccccccccc---CccccchHHHHHHHHH---------------------HHHHHHhhc-CCCceeee
Q 018809 84 S-AVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 84 ~-~~~~~l~~~D~~g~~~~~~~---~~~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~vl~l 137 (350)
. .....+++.|+..+...... .........+.++..+ .-+.+++++ .+|+++++
T Consensus 93 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 172 (258)
T PRK14241 93 RPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLM 172 (258)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2 12223444554432211000 0000001111111110 115577777 89999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhh------cCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ------DGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~------~g~~~~~~~ 205 (350)
| ||++++|......+...+..+.+ ...+... +|+...+.++||++ .+|. +|+++..++
T Consensus 173 D---EPt~~LD~~~~~~l~~~l~~~~~-----~~tviiv-sH~~~~~~~~~d~i-~~l~~~~~~~~g~i~~~~~ 236 (258)
T PRK14241 173 D---EPCSALDPISTLAIEDLINELKQ-----DYTIVIV-THNMQQAARVSDQT-AFFNLEATGKPGRLVEIDD 236 (258)
T ss_pred c---CCCccCCHHHHHHHHHHHHHHhc-----CCEEEEE-ecCHHHHHHhCCEE-EEEecccCCCCceEEecCC
Confidence 9 99999999987666555443311 1122122 49999999999998 6665 677765543
No 241
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1.2e-14 Score=135.34 Aligned_cols=177 Identities=18% Similarity=0.191 Sum_probs=106.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~ 83 (350)
.-.+++.++.+|++++|+|+||||||||+++|+|.... ....|.+|.|.++|.++.. +.. .|.++
T Consensus 39 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~------~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q 112 (271)
T PRK14238 39 ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVEL------VPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQ 112 (271)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccC------CCCCCCceeEEECCEEcccccccHHHHhhhEEEEec
Confidence 34678899999999999999999999999999998300 0001689999999875421 111 22233
Q ss_pred CCCCcceeeeeeccccccccc--Cccc-cchHHHHHHHH-------H--------------HHHHHHhhc-CCCceeeec
Q 018809 84 SAVPAFLEIHDIAGLVRGAHE--GQGL-GNSFLSHIRAV-------D--------------GIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 84 ~~~~~~l~~~D~~g~~~~~~~--~~~~-~~~~l~~l~~~-------d--------------~~l~vv~a~-~~~~vl~ld 138 (350)
.......++.+...+...... .... ...+...++.. + .-+.+++++ .+|+++++|
T Consensus 113 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLD 192 (271)
T PRK14238 113 KPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMD 192 (271)
T ss_pred CCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 211111244444432211000 0000 00011111111 0 015577777 899999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+.+ ...+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 193 ---EPt~~LD~~~~~~l~~~l~~~~~-----~~tiiiv-sH~~~~i~~~~d~i-~~l~~G~i~~~g~ 249 (271)
T PRK14238 193 ---EPTSALDPISTLKVEELVQELKK-----DYSIIIV-THNMQQAARISDKT-AFFLNGYVNEYDD 249 (271)
T ss_pred ---CCCCcCCHHHHHHHHHHHHHHHc-----CCEEEEE-EcCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999987665554433211 1122122 49999999999999 8889998876554
No 242
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.48 E-value=6.9e-14 Score=124.00 Aligned_cols=132 Identities=14% Similarity=0.177 Sum_probs=82.4
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh------hccCCC-CC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ------LFKPKS-AV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~------~~~~~~-~~ 86 (350)
-..++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++..... .|.++. ..
T Consensus 16 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~ 84 (198)
T TIGR01189 16 FEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL-----------LRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGL 84 (198)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCEEcccchHHhhhheEEeccCccc
Confidence 4678899999999999999999999999999999 57899999999876432111 122222 12
Q ss_pred CcceeeeeecccccccccCcc-ccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCchhHHH
Q 018809 87 PAFLEIHDIAGLVRGAHEGQG-LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~~~~-~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~ 150 (350)
...+++.|...+......... .....++.+...+ .-+.+++++ .+|+++++| ||++++|..
T Consensus 85 ~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD---EPt~~LD~~ 161 (198)
T TIGR01189 85 KPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILD---EPTTALDKA 161 (198)
T ss_pred ccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHH
Confidence 222445554433211110000 0011111111111 115677887 899999999 999999998
Q ss_pred HHHHHHHHH
Q 018809 151 SAELRLKDI 159 (350)
Q Consensus 151 ~~el~~~~l 159 (350)
..+.+...+
T Consensus 162 ~~~~l~~~l 170 (198)
T TIGR01189 162 GVALLAGLL 170 (198)
T ss_pred HHHHHHHHH
Confidence 865444443
No 243
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.48 E-value=1e-14 Score=135.37 Aligned_cols=178 Identities=14% Similarity=0.159 Sum_probs=107.6
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKP 82 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~ 82 (350)
+.=.+++.++.+|+++||+|+||||||||+++|+|..... ...|.+|.|.++|.++.. ... .|.+
T Consensus 34 ~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~------~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~ 107 (267)
T PRK14237 34 EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTI------DIARVTGQILYRGIDINRKEINVYEMRKHIGMVF 107 (267)
T ss_pred eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcc------CCCCcceEEEECCEEcccccCChHHHhcceEEEe
Confidence 3446788999999999999999999999999999983100 002589999999876521 111 2222
Q ss_pred CCCCCcceeeeeeccccccccc--Cc-cccchHHHHHHHHH---------------------HHHHHHhhc-CCCceeee
Q 018809 83 KSAVPAFLEIHDIAGLVRGAHE--GQ-GLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 83 ~~~~~~~l~~~D~~g~~~~~~~--~~-~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~vl~l 137 (350)
+.......++.|+..+...... .. .......+.+...+ .-+.+++++ .+|+++++
T Consensus 108 q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllL 187 (267)
T PRK14237 108 QRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLM 187 (267)
T ss_pred cCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 2211111244444332210000 00 00001111111110 115577777 89999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++++|....+.+...+..+.+ ...+... +|+...+.++||++ ..|++|+++..++
T Consensus 188 D---EPt~~LD~~~~~~l~~~l~~~~~-----~~tiii~-tH~~~~~~~~~d~i-~~l~~G~i~~~g~ 245 (267)
T PRK14237 188 D---EPASALDPISTMQLEETMFELKK-----NYTIIIV-THNMQQAARASDYT-AFFYLGDLIEYDK 245 (267)
T ss_pred e---CCcccCCHHHHHHHHHHHHHHhc-----CCEEEEE-ecCHHHHHHhcCEE-EEEECCEEEEeCC
Confidence 9 99999999887665555433311 1122122 49999999999999 8899998876654
No 244
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.48 E-value=9.1e-15 Score=164.19 Aligned_cols=174 Identities=16% Similarity=0.191 Sum_probs=112.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH----HHh--hccCCC-C
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LCQ--LFKPKS-A 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~----l~~--~~~~~~-~ 85 (350)
.-+.++..+.+|+++||+|+||||||||+++|+|. ..|++|.|.++|.++.. ... .|.+|. .
T Consensus 1954 aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gl-----------l~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~ 2022 (2272)
T TIGR01257 1954 AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGD-----------TTVTSGDATVAGKSILTNISDVHQNMGYCPQFDA 2022 (2272)
T ss_pred EEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCC-----------CCCCccEEEECCEECcchHHHHhhhEEEEecccc
Confidence 44678889999999999999999999999999999 68999999999976531 111 122332 2
Q ss_pred CCcceeeeeeccccccccc--Cc---cccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCc
Q 018809 86 VPAFLEIHDIAGLVRGAHE--GQ---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVR 145 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~--~~---~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~ 145 (350)
....+++.|...+....+. .. .....+++.+...+. -+.+++|+ .+|+++++| ||++
T Consensus 2023 L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLD---EPTs 2099 (2272)
T TIGR01257 2023 IDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLD---EPTT 2099 (2272)
T ss_pred CCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---CCCC
Confidence 2233455554432111000 00 000011111111110 14567777 899999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 146 ~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
++|+..+..+...+..+.+. .+.+... +|++++++.+||++ .+|.+|+++..|+.
T Consensus 2100 GLDp~sr~~l~~lL~~l~~~----g~TIILt-TH~mee~e~lcDrV-~IL~~G~i~~~Gs~ 2154 (2272)
T TIGR01257 2100 GMDPQARRMLWNTIVSIIRE----GRAVVLT-SHSMEECEALCTRL-AIMVKGAFQCLGTI 2154 (2272)
T ss_pred CCCHHHHHHHHHHHHHHHhC----CCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 99999987666655433211 1122122 49999999999999 99999998877654
No 245
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.48 E-value=8.4e-14 Score=123.83 Aligned_cols=158 Identities=13% Similarity=0.114 Sum_probs=91.9
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH----Hh--hccCCC-CC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQ--LFKPKS-AV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l----~~--~~~~~~-~~ 86 (350)
-.+++.++.+|+++||+|+||||||||+++|+|. .+|.+|.|.++|..+... .. .|.++. ..
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~ 84 (201)
T cd03231 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL-----------SPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGI 84 (201)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEecccccHHhhhheEEecccccc
Confidence 4678899999999999999999999999999999 588999999988654221 11 122211 11
Q ss_pred CcceeeeeecccccccccCccccchHHHHHHH--------------HHHHHHHHhhc-CCCceeeecCCCCCCchhHHHH
Q 018809 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA--------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVIS 151 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~--------------~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~ 151 (350)
....++.|...+..... ........++.+.. ...-+.+++++ .+|+++++| ||++++|...
T Consensus 85 ~~~~tv~e~l~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD---EPt~~LD~~~ 160 (201)
T cd03231 85 KTTLSVLENLRFWHADH-SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILD---EPTTALDKAG 160 (201)
T ss_pred CCCcCHHHHHHhhcccc-cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCCCCCHHH
Confidence 12233333332211100 00000111111100 01115577777 799999999 9999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 018809 152 AELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRV 191 (350)
Q Consensus 152 ~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i 191 (350)
.+.+...+..+.+ ....+... +|+.......++++
T Consensus 161 ~~~l~~~l~~~~~----~g~tiii~-sH~~~~~~~~~~~~ 195 (201)
T cd03231 161 VARFAEAMAGHCA----RGGMVVLT-THQDLGLSEAGARE 195 (201)
T ss_pred HHHHHHHHHHHHh----CCCEEEEE-ecCchhhhhcccee
Confidence 7555544322111 01111112 37776666666655
No 246
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.48 E-value=6.3e-14 Score=133.60 Aligned_cols=93 Identities=38% Similarity=0.661 Sum_probs=81.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
++-=..|+|||.||||||||+|+|++....+++|||||+.|+.|.+.+++. ..++++|+||+..
T Consensus 154 lk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~----------------~~~~i~D~PGli~ 217 (329)
T TIGR02729 154 LKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDG----------------RSFVIADIPGLIE 217 (329)
T ss_pred eeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCc----------------eEEEEEeCCCccc
Confidence 333457899999999999999999999888899999999999999988651 3588999999998
Q ss_pred ccccCccccchHHHHHHHHHHHHHHHhhc
Q 018809 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 101 ~~~~~~~~~~~~l~~l~~~d~~l~vv~a~ 129 (350)
.++...+++..|+++++.+|++++|+|+.
T Consensus 218 ~a~~~~gLg~~flrhierad~ll~VvD~s 246 (329)
T TIGR02729 218 GASEGAGLGHRFLKHIERTRVLLHLIDIS 246 (329)
T ss_pred CCcccccHHHHHHHHHHhhCEEEEEEcCc
Confidence 88877788889999999999999988874
No 247
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.48 E-value=1.5e-14 Score=143.65 Aligned_cols=167 Identities=19% Similarity=0.226 Sum_probs=101.4
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeee
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIH 93 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~ 93 (350)
-.+++.++.+|+++||+|+||||||||+++|+|. .+|.+|.|.++|.... .. +. ......+++.
T Consensus 40 L~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGL-----------l~P~sGeI~I~G~~~~-i~--~~--~~l~~~lTV~ 103 (549)
T PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV-----------TMPNKGTVDIKGSAAL-IA--IS--SGLNGQLTGI 103 (549)
T ss_pred EeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEeee-EE--ec--cccCCCCcHH
Confidence 3678889999999999999999999999999999 6899999999885310 00 00 0011112333
Q ss_pred eeccccccc--ccCcccc---chHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCchhHHHHHH
Q 018809 94 DIAGLVRGA--HEGQGLG---NSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAE 153 (350)
Q Consensus 94 D~~g~~~~~--~~~~~~~---~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~e 153 (350)
+...+.... ....... ..+++.+...+ .-+.+++++ .+|+++++| ||++++|.....
T Consensus 104 EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLD---EPTsgLD~~sr~ 180 (549)
T PRK13545 104 ENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVID---EALSVGDQTFTK 180 (549)
T ss_pred HHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE---CCcccCCHHHHH
Confidence 322111000 0000000 00000000000 114566666 799999999 999999998876
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 154 LRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 154 l~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
.+...+..+.+ ....+... +|+...+..+||++ .+|.+|++...++
T Consensus 181 ~LlelL~el~~----~G~TIIIV-SHdl~~i~~l~DrI-ivL~~GkIv~~G~ 226 (549)
T PRK13545 181 KCLDKMNEFKE----QGKTIFFI-SHSLSQVKSFCTKA-LWLHYGQVKEYGD 226 (549)
T ss_pred HHHHHHHHHHh----CCCEEEEE-ECCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 55554433211 11112122 49999999999999 8889998776554
No 248
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=2e-14 Score=134.81 Aligned_cols=173 Identities=16% Similarity=0.184 Sum_probs=105.4
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC--CcceEEEeCCcchhH-------HHh--hccCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE--PNEARVNIPDERFEW-------LCQ--LFKPK 83 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~--p~~G~i~~~~~~l~~-------l~~--~~~~~ 83 (350)
.++++++.+|++++|+|+||||||||+++|+|+... .+ |++|.|.++|.++.. +.. .|.++
T Consensus 56 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~--------~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q 127 (286)
T PRK14275 56 KKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDL--------IPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQ 127 (286)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc--------CCCCCCceEEEECCEEhhhcccchHHhhhcEEEECC
Confidence 577889999999999999999999999999997200 01 489999999876531 111 12222
Q ss_pred CCCCcceeeeeeccccccccc--C-ccccchHHHHHHHH-------H--------------HHHHHHhhc-CCCceeeec
Q 018809 84 SAVPAFLEIHDIAGLVRGAHE--G-QGLGNSFLSHIRAV-------D--------------GIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 84 ~~~~~~l~~~D~~g~~~~~~~--~-~~~~~~~l~~l~~~-------d--------------~~l~vv~a~-~~~~vl~ld 138 (350)
.......++.|+..+...... . ......+...++.. + .-+.+++++ .+|+++++|
T Consensus 128 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLD 207 (286)
T PRK14275 128 KPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLD 207 (286)
T ss_pred CCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 211111244444433211000 0 00000011111111 0 115577777 899999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+ ...+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 208 ---EPt~gLD~~~~~~l~~~L~~~~~-----~~tvIiv-sH~~~~~~~~~d~i-~~L~~G~i~~~g~ 264 (286)
T PRK14275 208 ---EPTSALDPKATAKIEDLIQELRG-----SYTIMIV-THNMQQASRVSDYT-MFFYEGVLVEHAP 264 (286)
T ss_pred ---CCCccCCHHHHHHHHHHHHHHhc-----CCeEEEE-eCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999987665554433211 1122122 49999999999999 8889998876543
No 249
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.47 E-value=7.6e-15 Score=148.32 Aligned_cols=170 Identities=15% Similarity=0.192 Sum_probs=108.2
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH------HH--hhccCCC-
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LC--QLFKPKS- 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~------l~--~~~~~~~- 84 (350)
-.+++..+.+|+++||+||||||||||+++|+|. .+|++|.|.++|+++.. +. -.|.++.
T Consensus 279 l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~ 347 (510)
T PRK09700 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGV-----------DKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESR 347 (510)
T ss_pred ccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CcCCCCeEEECCEECCCCCHHHHHHCCcEEccCcc
Confidence 3678899999999999999999999999999999 58899999999865421 11 1233332
Q ss_pred ---CCCcceeeeeeccccccc----cc---C---c----cccchHHHHHHHH-HH--------------HHHHHhhc-CC
Q 018809 85 ---AVPAFLEIHDIAGLVRGA----HE---G---Q----GLGNSFLSHIRAV-DG--------------IFHVLRAF-ED 131 (350)
Q Consensus 85 ---~~~~~l~~~D~~g~~~~~----~~---~---~----~~~~~~l~~l~~~-d~--------------~l~vv~a~-~~ 131 (350)
.....+++.+...+.... .. + . .....+++.+... +. -+.+++++ .+
T Consensus 348 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~ 427 (510)
T PRK09700 348 RDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCC 427 (510)
T ss_pred ccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcC
Confidence 122234454443322110 00 0 0 0001111111110 10 15577777 79
Q ss_pred CceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcccc
Q 018809 132 PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (350)
Q Consensus 132 ~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~ 203 (350)
|+++++| ||++++|....+.+...+..+.+ ....+... +|+...+..+||++ .+|.+|+++..
T Consensus 428 p~lLlLD---EPt~~LD~~~~~~l~~~l~~l~~----~g~tvi~v-sHd~~~~~~~~d~i-~~l~~G~i~~~ 490 (510)
T PRK09700 428 PEVIIFD---EPTRGIDVGAKAEIYKVMRQLAD----DGKVILMV-SSELPEIITVCDRI-AVFCEGRLTQI 490 (510)
T ss_pred CCEEEEC---CCCCCcCHHHHHHHHHHHHHHHH----CCCEEEEE-cCCHHHHHhhCCEE-EEEECCEEEEE
Confidence 9999999 99999999998776665544321 11122122 49999999999999 88899987653
No 250
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1.6e-14 Score=132.76 Aligned_cols=177 Identities=18% Similarity=0.252 Sum_probs=106.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~ 83 (350)
.-.++++++.+|++++|+|+||||||||+++|+|.... +| ..|.+|.|.++|.++.. ... .|.++
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~---~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 91 (250)
T PRK14240 18 ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDL---IP---SVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQ 91 (250)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc---cC---CCCCceEEEECCEEccccccchHHHhccEEEEec
Confidence 44678899999999999999999999999999997310 00 01268999999876531 111 12222
Q ss_pred CCCCcceeeeeeccccccccc--C-ccccchHHHHHHHHH---------------------HHHHHHhhc-CCCceeeec
Q 018809 84 SAVPAFLEIHDIAGLVRGAHE--G-QGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 84 ~~~~~~l~~~D~~g~~~~~~~--~-~~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~vl~ld 138 (350)
.......++.++..+...... . ........+.+..++ .-+.+++++ .+|+++++|
T Consensus 92 ~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 171 (250)
T PRK14240 92 QPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMD 171 (250)
T ss_pred CCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 211111344444433211000 0 000001111111110 115577777 899999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+. + ...+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 172 ---EP~~~LD~~~~~~l~~~l~~~~----~-~~tiii~-sH~~~~~~~~~d~v-~~l~~G~i~~~~~ 228 (250)
T PRK14240 172 ---EPTSALDPISTLKIEELIQELK----K-DYTIVIV-THNMQQASRISDKT-AFFLNGEIVEFGD 228 (250)
T ss_pred ---CCCccCCHHHHHHHHHHHHHHh----c-CCeEEEE-EeCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 9999999998766655443321 1 1122122 49999999999999 8889998876543
No 251
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.47 E-value=2e-14 Score=132.21 Aligned_cols=174 Identities=17% Similarity=0.234 Sum_probs=107.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC---cceEEEeCCcchhH-------HHh--hc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP---NEARVNIPDERFEW-------LCQ--LF 80 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p---~~G~i~~~~~~l~~-------l~~--~~ 80 (350)
.=.+++.++.+|++++|+|+||||||||+++|+|... ..| .+|.|.++|.++.. +.. .|
T Consensus 20 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 90 (252)
T PRK14239 20 ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMND---------LNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGM 90 (252)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccc---------cCCCCCccceEEECCEECcCcccchHhhhhcEEE
Confidence 3467889999999999999999999999999999721 124 58999999875421 111 12
Q ss_pred cCCCCCCcceeeeeeccccccc---ccCccccchHHHHHHHH-------H--------------HHHHHHhhc-CCCcee
Q 018809 81 KPKSAVPAFLEIHDIAGLVRGA---HEGQGLGNSFLSHIRAV-------D--------------GIFHVLRAF-EDPDII 135 (350)
Q Consensus 81 ~~~~~~~~~l~~~D~~g~~~~~---~~~~~~~~~~l~~l~~~-------d--------------~~l~vv~a~-~~~~vl 135 (350)
.++.......++.|+..+.... .............++.. + .-+.+++++ .+|+++
T Consensus 91 v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 170 (252)
T PRK14239 91 VFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKII 170 (252)
T ss_pred EecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 2332111123455544322100 00000001111111111 0 115577777 899999
Q ss_pred eecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 136 ~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++| ||++++|....+.+...+..+.+ ...+... +|+...+..+||++ .+|.+|++...++
T Consensus 171 llD---EPt~~LD~~~~~~l~~~l~~~~~-----~~tii~~-sH~~~~~~~~~d~i-~~l~~G~i~~~g~ 230 (252)
T PRK14239 171 LLD---EPTSALDPISAGKIEETLLGLKD-----DYTMLLV-TRSMQQASRISDRT-GFFLDGDLIEYND 230 (252)
T ss_pred EEc---CCccccCHHHHHHHHHHHHHHhh-----CCeEEEE-ECCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999 99999999987666655443311 1122222 49999999999999 8899998876554
No 252
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.47 E-value=1.8e-14 Score=144.85 Aligned_cols=170 Identities=12% Similarity=0.047 Sum_probs=104.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~--~~~~~~~ 85 (350)
.-..++.++.+|++++|+|+||||||||+++|+|. .+|++|.|.++|..+.. ... .+.++..
T Consensus 18 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~-----------~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~ 86 (490)
T PRK10938 18 TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE-----------LPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRN 86 (490)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCceEEECCcccccCCHHHHHHHhceeccCc
Confidence 34678899999999999999999999999999999 68999999987754321 111 1222211
Q ss_pred CC----c-----ceeeeeecccccccccCccccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCC
Q 018809 86 VP----A-----FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 86 ~~----~-----~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~ 141 (350)
.. . .+++.+...... ........+++.+...+. -+.+++++ .+|+++++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD--- 160 (490)
T PRK10938 87 NTDMLSPGEDDTGRTTAEIIQDEV---KDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILD--- 160 (490)
T ss_pred chhhcccchhhccccHHHhcccch---hHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc---
Confidence 00 0 112222111000 000000111111111110 14566666 799999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+ -...+... +|+...+..+||++ .+|++|+++..++
T Consensus 161 EPt~~LD~~~~~~l~~~l~~~~~----~g~tvii~-tH~~~~~~~~~d~v-~~l~~G~i~~~~~ 218 (490)
T PRK10938 161 EPFDGLDVASRQQLAELLASLHQ----SGITLVLV-LNRFDEIPDFVQFA-GVLADCTLAETGE 218 (490)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh----cCCeEEEE-eCCHHHHHhhCCEE-EEEECCEEEEeCC
Confidence 99999999997666665443321 11122122 49999999999999 8899999876544
No 253
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1.1e-14 Score=150.45 Aligned_cols=173 Identities=18% Similarity=0.204 Sum_probs=110.6
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--------Hh--hccCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQ--LFKPK 83 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------~~--~~~~~ 83 (350)
-.+++..|.+|+++||+|+||||||||+++|+|+ .+|.+|.|.++|.++..+ .. .|.+|
T Consensus 340 l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q 408 (623)
T PRK10261 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRL-----------VESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQ 408 (623)
T ss_pred EeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEec
Confidence 3678999999999999999999999999999999 589999999998754211 11 12222
Q ss_pred C---CCCcceeeeeeccccccccc---Cc---cccchHHHHHHHH-HH--------------HHHHHhhc-CCCceeeec
Q 018809 84 S---AVPAFLEIHDIAGLVRGAHE---GQ---GLGNSFLSHIRAV-DG--------------IFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 84 ~---~~~~~l~~~D~~g~~~~~~~---~~---~~~~~~l~~l~~~-d~--------------~l~vv~a~-~~~~vl~ld 138 (350)
. .....+++.++.......+. .. .....+++.+... +. -+.+++++ .+|+++++|
T Consensus 409 ~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllD 488 (623)
T PRK10261 409 DPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIAD 488 (623)
T ss_pred CchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 2 12223444444322110000 00 0011112221110 11 15677887 899999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|......++..+..+.+. ....+... +|++..+..+||++ .+|.+|+++..++
T Consensus 489 ---EPts~LD~~~~~~i~~ll~~l~~~---~g~tvi~i-sHdl~~v~~~~dri-~vl~~G~iv~~g~ 547 (623)
T PRK10261 489 ---EAVSALDVSIRGQIINLLLDLQRD---FGIAYLFI-SHDMAVVERISHRV-AVMYLGQIVEIGP 547 (623)
T ss_pred ---CCcccCCHHHHHHHHHHHHHHHHh---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 999999999987776665443321 11122122 49999999999999 8899999876554
No 254
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.47 E-value=2.5e-14 Score=147.89 Aligned_cols=166 Identities=17% Similarity=0.218 Sum_probs=107.9
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-------hccCCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-------~~~~~~~~ 86 (350)
=..++.+|++|+++||+|++|||||||+|+|+|+ ..|..|.|.++|.++..+.. .+.+|...
T Consensus 489 L~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gl-----------y~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~ 557 (709)
T COG2274 489 LEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL-----------YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF 557 (709)
T ss_pred hhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEeHHhcCHHHHHhheeEEcccch
Confidence 3677889999999999999999999999999999 68999999999988755322 23333332
Q ss_pred CcceeeeeecccccccccCccccchHHHHHHHHH----------------------------HHHHHHhhc-CCCceeee
Q 018809 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD----------------------------GIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d----------------------------~~l~vv~a~-~~~~vl~l 137 (350)
-..-++.|+..+....... ++..+.++.+. -.+.++|++ .+|.++++
T Consensus 558 Lf~gSI~eNi~l~~p~~~~----e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlL 633 (709)
T COG2274 558 LFSGSIRENIALGNPEATD----EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLL 633 (709)
T ss_pred hhcCcHHHHHhcCCCCCCH----HHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence 2233444444333221110 01111111110 015577777 79999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++.+|..++..+...+..+... ++. .--+|...- -..+|+| .+|++|+++..|+
T Consensus 634 D---EaTSaLD~~sE~~I~~~L~~~~~~-----~T~-I~IaHRl~t-i~~adrI-iVl~~Gkiv~~gs 690 (709)
T COG2274 634 D---EATSALDPETEAIILQNLLQILQG-----RTV-IIIAHRLST-IRSADRI-IVLDQGKIVEQGS 690 (709)
T ss_pred e---CcccccCHhHHHHHHHHHHHHhcC-----CeE-EEEEccchH-hhhccEE-EEccCCceeccCC
Confidence 9 999999999976555543322110 111 111376643 5778999 8999999987765
No 255
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=2.7e-14 Score=131.12 Aligned_cols=178 Identities=17% Similarity=0.198 Sum_probs=107.3
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchh------HHHh--hccCC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE------WLCQ--LFKPK 83 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~------~l~~--~~~~~ 83 (350)
+.-.++++++.+|++++|+|+||||||||+++|+|..... .-.|.+|.+.++|.++. .... .|.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q 90 (249)
T PRK14253 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLI------EGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQ 90 (249)
T ss_pred eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccc------cCCCCceEEEECCEEcccccchHHHHhheeEEec
Confidence 3457888999999999999999999999999999983100 00146899999886542 1111 23333
Q ss_pred CCCCcceeeeeeccccccccc---CccccchHHHHHHHH-------H--------------HHHHHHhhc-CCCceeeec
Q 018809 84 SAVPAFLEIHDIAGLVRGAHE---GQGLGNSFLSHIRAV-------D--------------GIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 84 ~~~~~~l~~~D~~g~~~~~~~---~~~~~~~~l~~l~~~-------d--------------~~l~vv~a~-~~~~vl~ld 138 (350)
.......++.|+..+...... ...........++.. + .-+.+++++ .+|+++++|
T Consensus 91 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 170 (249)
T PRK14253 91 KPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMD 170 (249)
T ss_pred CCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 221111344444332211000 000000101111111 0 115677777 899999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+.+ ...+... +|+...+..+|+++ .+|.+|++...++
T Consensus 171 ---EP~~~LD~~~~~~l~~~l~~~~~-----~~tii~~-sh~~~~~~~~~d~i-~~l~~G~i~~~g~ 227 (249)
T PRK14253 171 ---EPTSALDPIATHKIEELMEELKK-----NYTIVIV-THSMQQARRISDRT-AFFLMGELVEHDD 227 (249)
T ss_pred ---CCCccCCHHHHHHHHHHHHHHhc-----CCeEEEE-ecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999987666555443321 1122122 49999999999999 8899998876543
No 256
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.47 E-value=1.2e-14 Score=131.42 Aligned_cols=166 Identities=14% Similarity=0.165 Sum_probs=98.9
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKS 84 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~ 84 (350)
+.-.+++..+++|++++|+|+||||||||+++|+|. .+|.+|.|.++|+.+... .. .|.++.
T Consensus 28 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 96 (226)
T cd03248 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF-----------YQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQE 96 (226)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCcEEEECCCchHHcCHHHHHhhEEEEecc
Confidence 345788899999999999999999999999999999 589999999998765321 11 122222
Q ss_pred CCCcceeeeeecccccccccCc--------cccchHHHHH--HHH--------------HHHHHHHhhc-CCCceeeecC
Q 018809 85 AVPAFLEIHDIAGLVRGAHEGQ--------GLGNSFLSHI--RAV--------------DGIFHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~~--------~~~~~~l~~l--~~~--------------d~~l~vv~a~-~~~~vl~ld~ 139 (350)
......++.|+..+........ .....++..+ ... ..-+.+++++ .+|+++++|
T Consensus 97 ~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD- 175 (226)
T cd03248 97 PVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILD- 175 (226)
T ss_pred cHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe-
Confidence 1111123333322111000000 0000111111 000 0115577777 899999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCC
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~ 199 (350)
||++++|....+.+...+..+.+ ...+... +|+...+.. ||++ ..|.+|+
T Consensus 176 --EPt~~LD~~~~~~l~~~l~~~~~-----~~tii~~-sh~~~~~~~-~d~i-~~l~~g~ 225 (226)
T cd03248 176 --EATSALDAESEQQVQQALYDWPE-----RRTVLVI-AHRLSTVER-ADQI-LVLDGGR 225 (226)
T ss_pred --CCcccCCHHHHHHHHHHHHHHcC-----CCEEEEE-ECCHHHHHh-CCEE-EEecCCc
Confidence 99999999987666555433211 1112122 488888754 8887 6666664
No 257
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1.6e-14 Score=132.85 Aligned_cols=173 Identities=12% Similarity=0.135 Sum_probs=106.6
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-----cceEEEeCCcchhH-------HHh-
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEW-------LCQ- 78 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p-----~~G~i~~~~~~l~~-------l~~- 78 (350)
+.-.++++++.+|++++|+|+||+|||||+++|+|. .+| .+|.|.++|.++.. ...
T Consensus 18 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 86 (252)
T PRK14272 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM-----------HDLTPGARVTGRILLDGQDIYGPRVDPVAMRRR 86 (252)
T ss_pred EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCcCCCCceeEEECCEEcccCccCHHHhhce
Confidence 345778899999999999999999999999999998 344 37999998866421 111
Q ss_pred -hccCCC-CCCcceeeeeeccccccccc--Ccc-ccchHHHHHHHH----------H-----------HHHHHHhhc-CC
Q 018809 79 -LFKPKS-AVPAFLEIHDIAGLVRGAHE--GQG-LGNSFLSHIRAV----------D-----------GIFHVLRAF-ED 131 (350)
Q Consensus 79 -~~~~~~-~~~~~l~~~D~~g~~~~~~~--~~~-~~~~~l~~l~~~----------d-----------~~l~vv~a~-~~ 131 (350)
.|.++. .....+++.|+..+...... ... ........++.. + .-+.+++++ .+
T Consensus 87 i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~ 166 (252)
T PRK14272 87 VGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVE 166 (252)
T ss_pred eEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 122222 22223444444432211000 000 000000101100 0 115577777 89
Q ss_pred CceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 132 PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 132 ~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|+++++| ||++++|....+.+...+..+. + ...+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 167 p~llllD---EP~~~LD~~~~~~l~~~l~~~~----~-~~tiii~-sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 230 (252)
T PRK14272 167 PEILLMD---EPTSALDPASTARIEDLMTDLK----K-VTTIIIV-THNMHQAARVSDTT-SFFLVGDLVEHGP 230 (252)
T ss_pred CCEEEEe---CCCccCCHHHHHHHHHHHHHHh----c-CCeEEEE-eCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999999 9999999988766555543321 1 1222122 49999999999999 8899998775543
No 258
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.47 E-value=2e-14 Score=125.64 Aligned_cols=173 Identities=17% Similarity=0.247 Sum_probs=107.2
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH---------HhhccC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------CQLFKP 82 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l---------~~~~~~ 82 (350)
|.-+.++..|..|+++.+||.||||||||+|+++|. ..|++|.|.++|.++... +.+||.
T Consensus 20 ~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~-----------l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQd 88 (263)
T COG1101 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD-----------LKPTSGQILIDGVDVTKKSVAKRANLLARVFQD 88 (263)
T ss_pred HHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCc-----------cccCCceEEECceecccCCHHHHhhHHHHHhcc
Confidence 444778889999999999999999999999999998 799999999999876543 334543
Q ss_pred -CCCCCcceeeeeecccccccccCcccc--------chHHHHHHHH--------------------HHHHHHHhhcCCCc
Q 018809 83 -KSAVPAFLEIHDIAGLVRGAHEGQGLG--------NSFLSHIRAV--------------------DGIFHVLRAFEDPD 133 (350)
Q Consensus 83 -~~~~~~~l~~~D~~g~~~~~~~~~~~~--------~~~l~~l~~~--------------------d~~l~vv~a~~~~~ 133 (350)
.......+++-++..+.....+.+++. ..|...+... +++..+.-.++.|+
T Consensus 89 p~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pk 168 (263)
T COG1101 89 PLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPK 168 (263)
T ss_pred hhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCc
Confidence 233334566666665543322222211 1122222111 12233444568999
Q ss_pred eeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcccc
Q 018809 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (350)
Q Consensus 134 vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~ 203 (350)
+++|| |-+..+|+-..+.++..-..+ .++..-+. .-.+|+++.....-+|. .+|.+|+++.+
T Consensus 169 iLLLD---EHTAALDPkta~~vm~lT~ki---V~~~klTt-lMVTHnm~~Al~yG~Rl-ImLh~G~IvlD 230 (263)
T COG1101 169 ILLLD---EHTAALDPKTAEFVMELTAKI---VEEHKLTT-LMVTHNMEDALDYGNRL-IMLHSGKIVLD 230 (263)
T ss_pred EEEec---chhhcCCcchHHHHHHHHHHH---HHhcCCce-EEEeccHHHHHhhCCeE-EEEeCCeEEEE
Confidence 99999 444445554443333221111 11110000 01259999988888999 89999998854
No 259
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1.3e-14 Score=138.51 Aligned_cols=177 Identities=13% Similarity=0.154 Sum_probs=110.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~ 83 (350)
.=.+++..|++|+++||+|+||||||||+++|+|..... .-.|.+|.|.++|.++.. +.. .|.++
T Consensus 97 ~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~------~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q 170 (329)
T PRK14257 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLI------EGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQ 170 (329)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccc------CCCCCceEEEECCEEccccccchHhhhccEEEEec
Confidence 447788999999999999999999999999999983100 002578999999987631 111 23333
Q ss_pred CCCCcceeeeeecccccccc--cCcccc-chHHHHHHHHH---------------------HHHHHHhhc-CCCceeeec
Q 018809 84 SAVPAFLEIHDIAGLVRGAH--EGQGLG-NSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 84 ~~~~~~l~~~D~~g~~~~~~--~~~~~~-~~~l~~l~~~d---------------------~~l~vv~a~-~~~~vl~ld 138 (350)
.......++.|+..+..... ...... ......++.+. ..+.++||+ .+|+++++|
T Consensus 171 ~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLD 250 (329)
T PRK14257 171 KPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMD 250 (329)
T ss_pred CCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 32222345555554322110 000000 00111112111 116678887 899999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|......+...+..+.+ ..++ .-.+|++..+.++||++ .+|.+|+++..++
T Consensus 251 ---EPts~LD~~~~~~i~~~i~~l~~-----~~Ti-i~iTH~l~~i~~~~Dri-ivl~~G~i~e~g~ 307 (329)
T PRK14257 251 ---EPTSALDPIATAKIEELILELKK-----KYSI-IIVTHSMAQAQRISDET-VFFYQGWIEEAGE 307 (329)
T ss_pred ---CCcccCCHHHHHHHHHHHHHHhc-----CCEE-EEEeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999886554444322211 1111 12249999999999999 9999998876654
No 260
>PLN03211 ABC transporter G-25; Provisional
Probab=99.47 E-value=5.6e-14 Score=145.51 Aligned_cols=193 Identities=15% Similarity=0.156 Sum_probs=117.1
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC--cceEEEeCCcchhHH-H--hhccCCC-CCCc
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP--NEARVNIPDERFEWL-C--QLFKPKS-AVPA 88 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p--~~G~i~~~~~~l~~l-~--~~~~~~~-~~~~ 88 (350)
+++++.+++|+++||+||||||||||+++|+|. .+| .+|.|.++|+++... . ..|.+|. ....
T Consensus 85 ~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~-----------~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~ 153 (659)
T PLN03211 85 NGVTGMASPGEILAVLGPSGSGKSTLLNALAGR-----------IQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYP 153 (659)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCC-----------CCCCceeEEEEECCEECchhhccceEEECcccccCC
Confidence 678899999999999999999999999999998 345 489999999764321 1 1233332 2233
Q ss_pred ceeeeeecccccccccCc--------cccchHHHHHHHHH-------------------HHHHHHhhc-CCCceeeecCC
Q 018809 89 FLEIHDIAGLVRGAHEGQ--------GLGNSFLSHIRAVD-------------------GIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 89 ~l~~~D~~g~~~~~~~~~--------~~~~~~l~~l~~~d-------------------~~l~vv~a~-~~~~vl~ld~~ 140 (350)
.+++.|+..+........ ...+.+++.++..+ .-+.+++++ .+|+++++|
T Consensus 154 ~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD-- 231 (659)
T PLN03211 154 HLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD-- 231 (659)
T ss_pred cCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe--
Confidence 455555554321100000 00111111111110 014456666 799999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHH-HHHHHHHHHHHHhhcCCccccCCCChhHHHHHHHhhh
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK-IEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQL 219 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~-~~~~l~~~i~~~L~~g~~~~~~~~t~~~~e~i~~~~~ 219 (350)
||++++|......+...+..+.+ ..+++... +|+.. .+.+++|++ .+|.+|++++.|+.+ + +..++.
T Consensus 232 -EPtsgLD~~~~~~l~~~L~~l~~----~g~TvI~~-sH~~~~~i~~~~D~i-ilL~~G~iv~~G~~~----~-~~~~f~ 299 (659)
T PLN03211 232 -EPTSGLDATAAYRLVLTLGSLAQ----KGKTIVTS-MHQPSSRVYQMFDSV-LVLSEGRCLFFGKGS----D-AMAYFE 299 (659)
T ss_pred -CCCCCcCHHHHHHHHHHHHHHHh----CCCEEEEE-ecCCCHHHHHhhceE-EEecCCcEEEECCHH----H-HHHHHH
Confidence 99999999987655555433221 11222122 38886 578999999 889999998887643 2 334543
Q ss_pred hhcCCcchhcccc
Q 018809 220 LTAKPVVYLVNMN 232 (350)
Q Consensus 220 ~~~kp~~~~~n~~ 232 (350)
...-+.|.-.|-+
T Consensus 300 ~~G~~~P~~~NpA 312 (659)
T PLN03211 300 SVGFSPSFPMNPA 312 (659)
T ss_pred HCCCCCCCCCCHH
Confidence 3444555445543
No 261
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.47 E-value=5.8e-14 Score=125.09 Aligned_cols=133 Identities=17% Similarity=0.135 Sum_probs=82.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH---------Hh--hcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---------CQ--LFK 81 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l---------~~--~~~ 81 (350)
.-.++++++.+|++++|+|+||||||||+++|+|. .+|..|.|.++|..+..+ .. .|.
T Consensus 13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 81 (206)
T TIGR03608 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL-----------EKFDSGQVYLNGKETPPLNSKKASKFRREKLGYL 81 (206)
T ss_pred EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEccccchhhHHHHHHhCeeEE
Confidence 34678899999999999999999999999999999 689999999998763211 10 112
Q ss_pred CCC-CCCcceeeeeeccccccccc--C---ccccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCC
Q 018809 82 PKS-AVPAFLEIHDIAGLVRGAHE--G---QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 82 ~~~-~~~~~l~~~D~~g~~~~~~~--~---~~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~ 140 (350)
++. ..+...++.|+..+...... . ......+++.+...+. -+.+++++ .+|+++++|
T Consensus 82 ~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD-- 159 (206)
T TIGR03608 82 FQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD-- 159 (206)
T ss_pred ecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe--
Confidence 221 22223444444332110000 0 0000111111111110 15577777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHH
Q 018809 141 VDPVRDLEVISAELRLKDI 159 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l 159 (350)
||++.+|....+.+...+
T Consensus 160 -EPt~~LD~~~~~~l~~~l 177 (206)
T TIGR03608 160 -EPTGSLDPKNRDEVLDLL 177 (206)
T ss_pred -CCcCCCCHHHHHHHHHHH
Confidence 999999998876555544
No 262
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1.8e-14 Score=133.37 Aligned_cols=177 Identities=15% Similarity=0.210 Sum_probs=106.9
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~ 83 (350)
.-.++++.+++|++++|+|+||||||||+++|+|...... -.|.+|.|.++|.++.. +.. .|.++
T Consensus 23 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~------~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 96 (261)
T PRK14263 23 AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVK------GFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQ 96 (261)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHccccccc------CCCCceEEEECCEeccccccchHhhhhceEEEec
Confidence 3477899999999999999999999999999999931000 00378999999876521 111 22222
Q ss_pred CCCCcceeeeeeccccccccc-CccccchHHHHHHHH---------------------HHHHHHHhhc-CCCceeeecCC
Q 018809 84 SAVPAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 84 ~~~~~~l~~~D~~g~~~~~~~-~~~~~~~~l~~l~~~---------------------d~~l~vv~a~-~~~~vl~ld~~ 140 (350)
......+++.|+..+...... .......+...++.. ..-+.+++++ .+|+++++|
T Consensus 97 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD-- 174 (261)
T PRK14263 97 QPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLD-- 174 (261)
T ss_pred CCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe--
Confidence 221113455554433211000 000000111111110 0115577777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhh--------cCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ--------DGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~--------~g~~~~~~~ 205 (350)
||++++|......+...+..+.+ ...+... +|+...+..+||++ .+|+ +|+++..++
T Consensus 175 -EPtsgLD~~~~~~l~~~l~~~~~-----~~tii~i-sH~~~~i~~~~d~v-~~l~~~~~~~~~~G~i~~~g~ 239 (261)
T PRK14263 175 -EPCSALDPIATRRVEELMVELKK-----DYTIALV-THNMQQAIRVADTT-AFFSVDISQGTRTGYLVEMGP 239 (261)
T ss_pred -CCCccCCHHHHHHHHHHHHHHhc-----CCeEEEE-eCCHHHHHHhCCEE-EEEecccccccCCceEEEeCC
Confidence 99999999987666555443311 1122122 49999999999999 7785 688776543
No 263
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=1.6e-14 Score=133.40 Aligned_cols=171 Identities=19% Similarity=0.215 Sum_probs=105.3
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC--C---cceEEEeCCcchhH-------HHh--
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE--P---NEARVNIPDERFEW-------LCQ-- 78 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~--p---~~G~i~~~~~~l~~-------l~~-- 78 (350)
.=.+++..+++|++++|+|+||||||||+++|+|.. . | .+|.|.++|.++.. ...
T Consensus 27 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-----------~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 95 (259)
T PRK14274 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI-----------QMVPNVKLTGEMNYNGSNILKGKVDLVELRKNI 95 (259)
T ss_pred eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc-----------cCCCCCCCceEEEECCEEccccccCHHHHhhce
Confidence 346788899999999999999999999999999983 3 3 58999999876521 111
Q ss_pred hccCCCC-CCcceeeeeeccccccccc--C-ccc---cchHHHHHHHH----H--------------HHHHHHhhc-CCC
Q 018809 79 LFKPKSA-VPAFLEIHDIAGLVRGAHE--G-QGL---GNSFLSHIRAV----D--------------GIFHVLRAF-EDP 132 (350)
Q Consensus 79 ~~~~~~~-~~~~l~~~D~~g~~~~~~~--~-~~~---~~~~l~~l~~~----d--------------~~l~vv~a~-~~~ 132 (350)
.|.++.. ... .++.|+..+...... . ... ...+++.+... + .-+.+++++ .+|
T Consensus 96 ~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p 174 (259)
T PRK14274 96 GMVFQKGNPFP-QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNP 174 (259)
T ss_pred EEEecCCcccc-cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCC
Confidence 1222221 111 244443322211000 0 000 00111111100 0 015577777 899
Q ss_pred ceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 133 DIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 133 ~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+++++| ||++++|......+...+..+.+ ...+... +|+...+..+||++ .+|.+|+++..++
T Consensus 175 ~llllD---EPt~~LD~~~~~~l~~~l~~~~~-----~~tiiiv-tH~~~~~~~~~d~i-~~l~~G~i~~~g~ 237 (259)
T PRK14274 175 DVLLMD---EPTSALDPVSTRKIEELILKLKE-----KYTIVIV-THNMQQAARVSDQT-AFFYMGELVECND 237 (259)
T ss_pred CEEEEc---CCcccCCHHHHHHHHHHHHHHhc-----CCEEEEE-EcCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 999999 99999999987666555433311 1122122 49999999999999 8889998876554
No 264
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.47 E-value=1.7e-14 Score=150.72 Aligned_cols=165 Identities=16% Similarity=0.129 Sum_probs=107.9
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKS 84 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~ 84 (350)
|.=++++.++++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+. . .+.+|.
T Consensus 467 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-----------~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~ 535 (686)
T TIGR03797 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF-----------ETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQN 535 (686)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEEcCcCCHHHHHhccEEEccC
Confidence 344678899999999999999999999999999999 6899999999998764321 1 233333
Q ss_pred CCCcceeeeeecccccccccCccccchHHHHHHHH---H-------------------------HHHHHHhhc-CCCcee
Q 018809 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV---D-------------------------GIFHVLRAF-EDPDII 135 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~---d-------------------------~~l~vv~a~-~~~~vl 135 (350)
..-..-++.|+..+...... .+..+.++.+ + --+.++||+ .+|+++
T Consensus 536 ~~lf~gTI~eNi~~~~~~~~-----e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iL 610 (686)
T TIGR03797 536 GRLMSGSIFENIAGGAPLTL-----DEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRIL 610 (686)
T ss_pred CccCcccHHHHHhcCCCCCH-----HHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 22222344454444322100 0000111100 0 015577777 899999
Q ss_pred eecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 136 ~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++| ||++.+|..+++.+...+.. ..+++ .-.+|....+. .+|+| ..|++|+++..|+
T Consensus 611 iLD---EpTS~LD~~te~~i~~~L~~-------~~~T~-IiItHr~~~i~-~~D~I-ivl~~G~iv~~G~ 667 (686)
T TIGR03797 611 LFD---EATSALDNRTQAIVSESLER-------LKVTR-IVIAHRLSTIR-NADRI-YVLDAGRVVQQGT 667 (686)
T ss_pred EEe---CCccCCCHHHHHHHHHHHHH-------hCCeE-EEEecChHHHH-cCCEE-EEEECCEEEEECC
Confidence 999 99999999987655554322 11222 12248887664 58999 8889999887665
No 265
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.46 E-value=2.7e-14 Score=132.39 Aligned_cols=177 Identities=15% Similarity=0.158 Sum_probs=104.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~ 83 (350)
.-.++++++++|++++|+|+||||||||+++|+|..... | ..|.+|.|.++|.++.. ... .|.++
T Consensus 25 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~---~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 98 (264)
T PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLI---P---GFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQ 98 (264)
T ss_pred EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccc---C---CCCCceEEEECCEEccccccChHHHhhhEEEEcc
Confidence 346788999999999999999999999999999983100 0 01478999998865421 111 12222
Q ss_pred CCCCcceeeeeeccccccccc-CccccchHHHHHHHH---------------------HHHHHHHhhc-CCCceeeecCC
Q 018809 84 SAVPAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 84 ~~~~~~l~~~D~~g~~~~~~~-~~~~~~~~l~~l~~~---------------------d~~l~vv~a~-~~~~vl~ld~~ 140 (350)
.......++.++..+...... ...........++.+ ..-+.+++++ .+|+++++|
T Consensus 99 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD-- 176 (264)
T PRK14243 99 KPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMD-- 176 (264)
T ss_pred CCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 211101233333322111000 000000010111110 0115577777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhh---------cCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ---------DGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~---------~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+ ...+... +|+...+..+||++ .+|+ +|+++..+.
T Consensus 177 -EPt~~LD~~~~~~l~~~L~~~~~-----~~tvi~v-tH~~~~~~~~~d~v-~~l~~~~~~~~~~~g~i~~~~~ 242 (264)
T PRK14243 177 -EPCSALDPISTLRIEELMHELKE-----QYTIIIV-THNMQQAARVSDMT-AFFNVELTEGGGRYGYLVEFDR 242 (264)
T ss_pred -CCCccCCHHHHHHHHHHHHHHhc-----CCEEEEE-ecCHHHHHHhCCEE-EEEecccccccccCceEEEeCC
Confidence 99999999987666655543321 1122122 49999999999999 7777 677765543
No 266
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=1.1e-14 Score=139.28 Aligned_cols=178 Identities=12% Similarity=0.137 Sum_probs=107.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh------hcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ------LFK 81 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~------~~~ 81 (350)
.-..++.+|.+|+++||+|+||||||||+++|+|+... ...|++|.|.++|+++..+ .. .|.
T Consensus 22 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~-------~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v 94 (330)
T PRK15093 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKD-------NWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMI 94 (330)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCC-------CCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEE
Confidence 44788899999999999999999999999999999410 0136789999998764221 10 122
Q ss_pred CCCC---CCcceeeeeecccc-----c-cc---c--cCccccchHHHHHHHH---HH--------------HHHHHhhc-
Q 018809 82 PKSA---VPAFLEIHDIAGLV-----R-GA---H--EGQGLGNSFLSHIRAV---DG--------------IFHVLRAF- 129 (350)
Q Consensus 82 ~~~~---~~~~l~~~D~~g~~-----~-~~---~--~~~~~~~~~l~~l~~~---d~--------------~l~vv~a~- 129 (350)
+|.. ....+++.+..... . +. . ........+++.++.. +. -+.+++++
T Consensus 95 ~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~ 174 (330)
T PRK15093 95 FQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALA 174 (330)
T ss_pred ecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHH
Confidence 2211 11112222222110 0 00 0 0000011112211111 00 15577777
Q ss_pred CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 130 EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 130 ~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
.+|+++++| ||++.+|......+...+..+.+. ....+... +|++..+..+||++ .+|.+|+++..++
T Consensus 175 ~~P~llilD---EPts~LD~~~~~~i~~lL~~l~~~---~g~tii~i-tHdl~~v~~~~dri-~vm~~G~ive~g~ 242 (330)
T PRK15093 175 NQPRLLIAD---EPTNAMEPTTQAQIFRLLTRLNQN---NNTTILLI-SHDLQMLSQWADKI-NVLYCGQTVETAP 242 (330)
T ss_pred CCCCEEEEe---CCCCcCCHHHHHHHHHHHHHHHHh---cCCEEEEE-ECCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 899999999 999999998876655554433221 11112122 49999999999999 8999999876654
No 267
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=1.8e-14 Score=132.52 Aligned_cols=176 Identities=15% Similarity=0.166 Sum_probs=106.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-------Hh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-------~~--~~~~~ 83 (350)
.-.++++.+.+|++++|+|+||||||||+++|+|.... .| ..|..|.|.++|.++... .. .|.++
T Consensus 20 ~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~---~~---~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 93 (251)
T PRK14244 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDF---VP---NCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQ 93 (251)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccc---CC---CCCcceEEEECCEehHhcccchHHHhhhEEEEec
Confidence 34678899999999999999999999999999998310 00 015799999998765321 11 12222
Q ss_pred CC-CCcceeeeeeccccccccc---C-ccccchHHHHHHHHH---------------------HHHHHHhhc-CCCceee
Q 018809 84 SA-VPAFLEIHDIAGLVRGAHE---G-QGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 84 ~~-~~~~l~~~D~~g~~~~~~~---~-~~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~vl~ 136 (350)
.. ... .++.|+..+...... . ......+.+.++..+ .-+.+++++ .+|++++
T Consensus 94 ~~~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 172 (251)
T PRK14244 94 KPNPFP-KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLL 172 (251)
T ss_pred Cccccc-CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 21 111 133343322210000 0 000000111111111 115577787 8999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+| ||++++|....+.+...+..+. + ...+... +|+...+..+||++ .+|.+|+++..++
T Consensus 173 lD---EPt~~LD~~~~~~l~~~l~~~~----~-~~tiiii-sH~~~~~~~~~d~i-~~l~~G~i~~~~~ 231 (251)
T PRK14244 173 MD---EPCSALDPVATNVIENLIQELK----K-NFTIIVV-THSMKQAKKVSDRV-AFFQSGRIVEYNT 231 (251)
T ss_pred Ee---CCCccCCHHHHHHHHHHHHHHh----c-CCeEEEE-eCCHHHHHhhcCEE-EEEECCEEEEeCC
Confidence 99 9999999988766655543321 1 1222122 49999999999999 8899998775543
No 268
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.46 E-value=1.9e-14 Score=148.93 Aligned_cols=168 Identities=14% Similarity=0.245 Sum_probs=102.5
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcch--hHHHhhccCCCCCCcceee
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF--EWLCQLFKPKSAVPAFLEI 92 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l--~~l~~~~~~~~~~~~~l~~ 92 (350)
.++++.|.+|+++||+|+||||||||+++|+|. .+|++|.|.+ |..+ .++. +.....+..+++
T Consensus 336 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~-----------~~p~~G~i~~-~~~~~i~y~~---q~~~~l~~~~tv 400 (635)
T PRK11147 336 KDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ-----------LQADSGRIHC-GTKLEVAYFD---QHRAELDPEKTV 400 (635)
T ss_pred cCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEE-CCCcEEEEEe---CcccccCCCCCH
Confidence 567889999999999999999999999999999 5899999988 4322 1111 111112223344
Q ss_pred eeecccccccc--cC-ccccchHHHHHHH----H-----------HHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHH
Q 018809 93 HDIAGLVRGAH--EG-QGLGNSFLSHIRA----V-----------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAE 153 (350)
Q Consensus 93 ~D~~g~~~~~~--~~-~~~~~~~l~~l~~----~-----------d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~e 153 (350)
.|...+..... .. ......++..+.. . ..-+.+++++ .+|+++++| ||++++|+...+
T Consensus 401 ~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLD---EPt~~LD~~~~~ 477 (635)
T PRK11147 401 MDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILD---EPTNDLDVETLE 477 (635)
T ss_pred HHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHH
Confidence 44332211000 00 0000001111000 0 0115567777 799999999 999999998865
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhh-cCCcc-ccCCCChh
Q 018809 154 LRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ-DGKDV-RLGDWKAA 209 (350)
Q Consensus 154 l~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~-~g~~~-~~~~~t~~ 209 (350)
.+...+ ..+...+... +|+...+..+|+++ .++. +|++. +.|++++-
T Consensus 478 ~l~~~l-------~~~~~tvi~v-SHd~~~~~~~~d~i-~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 478 LLEELL-------DSYQGTVLLV-SHDRQFVDNTVTEC-WIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred HHHHHH-------HhCCCeEEEE-ECCHHHHHHhcCEE-EEEeCCCeEEEccCCHHHH
Confidence 444332 2222222122 49999999999999 7776 78875 45777643
No 269
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=2.6e-14 Score=131.45 Aligned_cols=172 Identities=17% Similarity=0.214 Sum_probs=105.5
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc-----ceEEEeCCcchhH-------HHh--
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-----EARVNIPDERFEW-------LCQ-- 78 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~-----~G~i~~~~~~l~~-------l~~-- 78 (350)
.=..++.++.+|++++|+|+||||||||+++|+|. .+|. .|.|.++|.++.. +..
T Consensus 19 il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i 87 (251)
T PRK14249 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRM-----------NDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRV 87 (251)
T ss_pred EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCccccCCcccEEEECCEEccccccChHHhhceE
Confidence 34678889999999999999999999999999999 3454 6999998865421 111
Q ss_pred hccCCCCCCcceeeeeecccccccc---cCccccchHHHHHHHHH---------------------HHHHHHhhc-CCCc
Q 018809 79 LFKPKSAVPAFLEIHDIAGLVRGAH---EGQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPD 133 (350)
Q Consensus 79 ~~~~~~~~~~~l~~~D~~g~~~~~~---~~~~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~ 133 (350)
.|.++.......++.|+..+..... ........+...++..+ .-+.+++++ .+|+
T Consensus 88 ~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 167 (251)
T PRK14249 88 GMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPE 167 (251)
T ss_pred EEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 1222221111124444433221100 00000011111111111 115677887 8999
Q ss_pred eeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 134 vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++++| ||++++|....+.+...+..+. + ...+... +|+...+..+||++ .+|.+|++...++
T Consensus 168 lllLD---EPt~~LD~~~~~~l~~~l~~~~----~-~~tiliv-sh~~~~~~~~~d~i-~~l~~G~i~~~~~ 229 (251)
T PRK14249 168 VILMD---EPCSALDPVSTMRIEELMQELK----Q-NYTIAIV-THNMQQAARASDWT-GFLLTGDLVEYGR 229 (251)
T ss_pred EEEEe---CCCccCCHHHHHHHHHHHHHHh----c-CCEEEEE-eCCHHHHHhhCCEE-EEEeCCeEEEeCC
Confidence 99999 9999999998766555443321 1 1122122 49999999999999 8889998765543
No 270
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.46 E-value=8.4e-15 Score=151.23 Aligned_cols=175 Identities=17% Similarity=0.239 Sum_probs=109.2
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchh-----------------
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE----------------- 74 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~----------------- 74 (350)
+.-..++.++.+|+++||+|+||||||||+++|+|+ ..|.+|.|.++|..+.
T Consensus 30 ~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl-----------l~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 98 (623)
T PRK10261 30 AAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL-----------LEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQM 98 (623)
T ss_pred eEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC-----------CCCCCeEEEECCEEeccccccccccccCCHHHH
Confidence 345678999999999999999999999999999999 6788999988764220
Q ss_pred -HHH--h-hccCCC---CCCcceeeeeecccccccccC---c---cccchHHHHHHHHH---HH--------------HH
Q 018809 75 -WLC--Q-LFKPKS---AVPAFLEIHDIAGLVRGAHEG---Q---GLGNSFLSHIRAVD---GI--------------FH 124 (350)
Q Consensus 75 -~l~--~-~~~~~~---~~~~~l~~~D~~g~~~~~~~~---~---~~~~~~l~~l~~~d---~~--------------l~ 124 (350)
.+. . .|.+|. .....+++.+...+....+.+ . .....+++.+...+ .+ +.
T Consensus 99 ~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~ 178 (623)
T PRK10261 99 RHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVM 178 (623)
T ss_pred HHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHH
Confidence 010 0 111111 111123444433221100000 0 00111111111100 01 55
Q ss_pred HHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcccc
Q 018809 125 VLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (350)
Q Consensus 125 vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~ 203 (350)
+++++ .+|+++++| ||++.+|......+.+.+..+.+. ....+... +|++..+..+||++ .+|.+|+++..
T Consensus 179 iA~AL~~~P~lLllD---EPt~~LD~~~~~~l~~ll~~l~~~---~g~tvi~i-tHdl~~~~~~adri-~vl~~G~i~~~ 250 (623)
T PRK10261 179 IAMALSCRPAVLIAD---EPTTALDVTIQAQILQLIKVLQKE---MSMGVIFI-THDMGVVAEIADRV-LVMYQGEAVET 250 (623)
T ss_pred HHHHHhCCCCEEEEe---CCCCccCHHHHHHHHHHHHHHHHh---cCCEEEEE-cCCHHHHHHhCCEE-EEeeCCeeccc
Confidence 77777 899999999 999999999987777765544321 11222222 49999999999999 99999998765
Q ss_pred CC
Q 018809 204 GD 205 (350)
Q Consensus 204 ~~ 205 (350)
++
T Consensus 251 g~ 252 (623)
T PRK10261 251 GS 252 (623)
T ss_pred CC
Confidence 44
No 271
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.46 E-value=1e-14 Score=147.39 Aligned_cols=170 Identities=14% Similarity=0.167 Sum_probs=105.1
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH------H--hhccCCC--
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKS-- 84 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l------~--~~~~~~~-- 84 (350)
..++.++++|+++||+|+||||||||+++|+|. .+|.+|.|.++|.++... . -.|.++.
T Consensus 280 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~ 348 (510)
T PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGL-----------RPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQ 348 (510)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHcCC-----------CCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChh
Confidence 568889999999999999999999999999999 588999999988654211 0 1233332
Q ss_pred --CCCcceeeeeecccc-----ccc-ccC--ccccchHHHHHHHH-H--------------HHHHHHhhc-CCCceeeec
Q 018809 85 --AVPAFLEIHDIAGLV-----RGA-HEG--QGLGNSFLSHIRAV-D--------------GIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 85 --~~~~~l~~~D~~g~~-----~~~-~~~--~~~~~~~l~~l~~~-d--------------~~l~vv~a~-~~~~vl~ld 138 (350)
.....+++.+..... ... ... ......++..+... + .-+.+++++ .+|+++++|
T Consensus 349 ~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLD 428 (510)
T PRK15439 349 SSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVD 428 (510)
T ss_pred hCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEEC
Confidence 112122332221100 000 000 00000111111110 0 015566777 799999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
||++++|....+.+...+..+.+ ....+... +|+...+..+||++ .+|.+|+++..+
T Consensus 429 ---EPt~gLD~~~~~~l~~~l~~l~~----~g~tiIiv-sHd~~~i~~~~d~i-~~l~~G~i~~~~ 485 (510)
T PRK15439 429 ---EPTRGVDVSARNDIYQLIRSIAA----QNVAVLFI-SSDLEEIEQMADRV-LVMHQGEISGAL 485 (510)
T ss_pred ---CCCcCcChhHHHHHHHHHHHHHh----CCCEEEEE-CCCHHHHHHhCCEE-EEEECCEEEEEE
Confidence 99999999998666665443322 11122122 49999999999999 888999887543
No 272
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.46 E-value=1e-14 Score=148.05 Aligned_cols=173 Identities=18% Similarity=0.239 Sum_probs=109.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--------Hh--hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------CQ--LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------~~--~~~~ 82 (350)
.-.+++..+++|+++||+|+||||||||+++|+|. . |.+|.|.++|.++... .. .|.+
T Consensus 301 il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl-----------~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~ 368 (529)
T PRK15134 301 VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL-----------I-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVF 368 (529)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCc-----------C-CCCcEEEECCEEccccchhhHHHhhhceEEEE
Confidence 34778999999999999999999999999999998 3 4789999998654211 11 1222
Q ss_pred CCC---CCcceeeeeecccccccc----cC---ccccchHHHHHHHH-HH--------------HHHHHhhc-CCCceee
Q 018809 83 KSA---VPAFLEIHDIAGLVRGAH----EG---QGLGNSFLSHIRAV-DG--------------IFHVLRAF-EDPDIIH 136 (350)
Q Consensus 83 ~~~---~~~~l~~~D~~g~~~~~~----~~---~~~~~~~l~~l~~~-d~--------------~l~vv~a~-~~~~vl~ 136 (350)
+.. ....+++.++..+..... .. ......+++.+... +. -+.+++++ .+|++++
T Consensus 369 q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 448 (529)
T PRK15134 369 QDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLII 448 (529)
T ss_pred eCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEE
Confidence 221 222344555443221000 00 00011112221111 01 15677787 8999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+| ||++++|....+.+...+..+.+. ....+... +|+...+..+||++ .+|.+|+++..++
T Consensus 449 lD---EPt~~LD~~~~~~l~~~l~~~~~~---~~~tvi~v-sHd~~~~~~~~d~i-~~l~~G~i~~~~~ 509 (529)
T PRK15134 449 LD---EPTSSLDKTVQAQILALLKSLQQK---HQLAYLFI-SHDLHVVRALCHQV-IVLRQGEVVEQGD 509 (529)
T ss_pred ee---CCccccCHHHHHHHHHHHHHHHHh---hCCEEEEE-eCCHHHHHHhcCeE-EEEECCEEEEEcC
Confidence 99 999999999987776665443221 11122122 49999999999999 8899998875543
No 273
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.46 E-value=3e-14 Score=146.23 Aligned_cols=168 Identities=18% Similarity=0.217 Sum_probs=106.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~ 85 (350)
-=.+++.++++|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++..+. . .|.+|..
T Consensus 358 il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl-----------~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~ 426 (582)
T PRK11176 358 ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRF-----------YDIDEGEILLDGHDLRDYTLASLRNQVALVSQNV 426 (582)
T ss_pred cccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCceEEECCEEhhhcCHHHHHhhceEEccCc
Confidence 34678889999999999999999999999999999 6899999999998765422 1 2444443
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHH---H-------------------------HHHHHHhhc-CCCceee
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV---D-------------------------GIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~---d-------------------------~~l~vv~a~-~~~~vl~ 136 (350)
.-..-++.|+..+........ .+..+.++.+ + --+.++|++ .+|++++
T Consensus 427 ~lf~~Ti~~Ni~~~~~~~~~~---~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ili 503 (582)
T PRK11176 427 HLFNDTIANNIAYARTEQYSR---EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_pred eeecchHHHHHhcCCCCCCCH---HHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEE
Confidence 322334455444432110000 0000011100 0 014577777 7999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+| ||++.+|..++..+...+..+. + .+++ .-.+|....+ ..+|+| ..|++|+++..|+
T Consensus 504 lD---EptsaLD~~t~~~i~~~l~~~~---~--~~tv-I~VtHr~~~~-~~~D~I-i~l~~g~i~e~g~ 561 (582)
T PRK11176 504 LD---EATSALDTESERAIQAALDELQ---K--NRTS-LVIAHRLSTI-EKADEI-LVVEDGEIVERGT 561 (582)
T ss_pred EE---CccccCCHHHHHHHHHHHHHHh---C--CCEE-EEEecchHHH-HhCCEE-EEEECCEEEEeCC
Confidence 99 9999999998755444332210 0 0111 1124888654 559999 8889998876655
No 274
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.46 E-value=1.2e-14 Score=146.61 Aligned_cols=172 Identities=12% Similarity=0.167 Sum_probs=108.3
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH------HH--hhccCCC-
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LC--QLFKPKS- 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~------l~--~~~~~~~- 84 (350)
-.+++..+.+|+++||+|+||||||||+++|+|. .+|++|.|.++|+.+.. .. -.|.++.
T Consensus 268 l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~ 336 (501)
T PRK10762 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGA-----------LPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDR 336 (501)
T ss_pred cccceEEEcCCcEEEEecCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCCCCHHHHHHCCCEEecCcc
Confidence 3678889999999999999999999999999999 68999999999865421 11 1233332
Q ss_pred ---CCCcceeeeeecccccc--cc------cC---ccccchHHHHHHHH---------------HHHHHHHhhc-CCCce
Q 018809 85 ---AVPAFLEIHDIAGLVRG--AH------EG---QGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDI 134 (350)
Q Consensus 85 ---~~~~~l~~~D~~g~~~~--~~------~~---~~~~~~~l~~l~~~---------------d~~l~vv~a~-~~~~v 134 (350)
.....+++.+...+... .. .. ......+++.+... ..-+.+++++ .+|++
T Consensus 337 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~l 416 (501)
T PRK10762 337 KRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKV 416 (501)
T ss_pred ccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 12223444443322100 00 00 00001111111110 0115577777 79999
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 135 l~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+++| ||++++|....+.+...+..+.+. ...+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 417 llLD---EPt~~LD~~~~~~l~~~l~~~~~~----g~tviiv-tHd~~~~~~~~d~v-~~l~~G~i~~~~~ 478 (501)
T PRK10762 417 LILD---EPTRGVDVGAKKEIYQLINQFKAE----GLSIILV-SSEMPEVLGMSDRI-LVMHEGRISGEFT 478 (501)
T ss_pred EEEc---CCCCCCCHhHHHHHHHHHHHHHHC----CCEEEEE-cCCHHHHHhhCCEE-EEEECCEEEEEec
Confidence 9999 999999999976666654433210 1122122 49999999999999 8899998875543
No 275
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.46 E-value=1.6e-14 Score=132.86 Aligned_cols=166 Identities=16% Similarity=0.222 Sum_probs=97.0
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCC-CCCcc--e
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-AVPAF--L 90 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~-~~~~~--l 90 (350)
-.+++..+.+|++++|+|+||||||||+++|+|. .+|.+|.|.+++.. .+ .|.++. ..... .
T Consensus 20 l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl-----------~~p~~G~i~~~~~~--~i--~~v~q~~~~~~~l~~ 84 (251)
T PRK09544 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL-----------VAPDEGVIKRNGKL--RI--GYVPQKLYLDTTLPL 84 (251)
T ss_pred EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCcc--CE--EEeccccccccccCh
Confidence 3577889999999999999999999999999999 58999999987632 01 111111 01101 1
Q ss_pred eeeeecccccccccCccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHH
Q 018809 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELR 155 (350)
Q Consensus 91 ~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~ 155 (350)
++.+...+..... ......+++.+...+ .-+.+++++ .+|+++++| ||++++|....+.+
T Consensus 85 ~~~~~~~~~~~~~--~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD---EPt~~LD~~~~~~l 159 (251)
T PRK09544 85 TVNRFLRLRPGTK--KEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLD---EPTQGVDVNGQVAL 159 (251)
T ss_pred hHHHHHhcccccc--HHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe---CCCcCCCHHHHHHH
Confidence 1111111100000 000000111111000 114566776 799999999 99999999887655
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 156 LKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 156 ~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
...+..+.+ +....+.. .+|+...+..+|+++ .+|. ++++..++
T Consensus 160 ~~~L~~~~~---~~g~tiii-vsH~~~~i~~~~d~i-~~l~-~~i~~~g~ 203 (251)
T PRK09544 160 YDLIDQLRR---ELDCAVLM-VSHDLHLVMAKTDEV-LCLN-HHICCSGT 203 (251)
T ss_pred HHHHHHHHH---hcCCEEEE-EecCHHHHHHhCCEE-EEEC-CceEeeCC
Confidence 554433211 11111212 249999999999999 6775 45554443
No 276
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.45 E-value=4.6e-14 Score=127.67 Aligned_cols=169 Identities=17% Similarity=0.233 Sum_probs=110.5
Q ss_pred ccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------------HHhhccCC
Q 018809 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------------LCQLFKPK 83 (350)
Q Consensus 17 ~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------------l~~~~~~~ 83 (350)
++...+...+++|.|++|||||||+|+++|+ .+|+.|.|.++|+.+.. +..+|+..
T Consensus 17 a~~~~p~~GvTAlFG~SGsGKTslin~IaGL-----------~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDA 85 (352)
T COG4148 17 ANFTLPARGITALFGPSGSGKTSLINMIAGL-----------TRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDA 85 (352)
T ss_pred EeccCCCCceEEEecCCCCChhhHHHHHhcc-----------CCccccEEEECCEEeecccCCcccChhhheeeeEeecc
Confidence 3444555589999999999999999999999 79999999999865422 12234434
Q ss_pred CCCCcceeeeeecccccccccCccccchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecCCCCCCchhH
Q 018809 84 SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (350)
Q Consensus 84 ~~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (350)
+.+| ++++..+..++........+ .+..+.+..-.++ +.+-||+ .+|+++.+| ||+..+|
T Consensus 86 RLFp-H~tVrgNL~YG~~~~~~~~f-d~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmD---EPLaSLD 160 (352)
T COG4148 86 RLFP-HYTVRGNLRYGMWKSMRAQF-DQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMD---EPLASLD 160 (352)
T ss_pred cccc-ceEEecchhhhhcccchHhH-HHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeec---Cchhhcc
Confidence 4433 56766665554332211000 0111111111111 4566777 899999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 149 ~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
.-.+..++..++.+.+.+ ..-+ .-.+|.++++..+.|++ ..|++|+....|..
T Consensus 161 ~~RK~EilpylERL~~e~---~IPI-lYVSHS~~Ev~RLAd~v-V~le~GkV~A~g~~ 213 (352)
T COG4148 161 LPRKREILPYLERLRDEI---NIPI-LYVSHSLDEVLRLADRV-VVLENGKVKASGPL 213 (352)
T ss_pred cchhhHHHHHHHHHHHhc---CCCE-EEEecCHHHHHhhhheE-EEecCCeEEecCcH
Confidence 988876666655443332 1111 12249999999999999 99999998766553
No 277
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.45 E-value=2.2e-14 Score=150.55 Aligned_cols=166 Identities=14% Similarity=0.152 Sum_probs=109.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-------hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-------~~~~~~~ 85 (350)
.=++++.++++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+.. .|.+|..
T Consensus 494 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl-----------~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~ 562 (710)
T TIGR03796 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGL-----------YQPWSGEILFDGIPREEIPREVLANSVAMVDQDI 562 (710)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEeHHHCCHHHHHhheeEEecCC
Confidence 34678889999999999999999999999999999 68999999999987754321 2444443
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHHH----------------------------HHHHHHhhc-CCCceee
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD----------------------------GIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d----------------------------~~l~vv~a~-~~~~vl~ 136 (350)
.-..-++.|+..+....... .++.+.++.+. --+.++||+ .+|++++
T Consensus 563 ~lf~gTi~eNi~l~~~~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~ili 638 (710)
T TIGR03796 563 FLFEGTVRDNLTLWDPTIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILI 638 (710)
T ss_pred hhhhccHHHHhhCCCCCCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEE
Confidence 33334555555443211100 00111111110 014577777 7999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
+| ||++.+|..++..+...+.. ..+++ .-.+|....+. .+|+| ..|++|+++..|+.
T Consensus 639 LD---EptS~LD~~te~~i~~~l~~-------~~~T~-IiitHrl~~i~-~~D~I-ivl~~G~i~~~G~~ 695 (710)
T TIGR03796 639 LD---EATSALDPETEKIIDDNLRR-------RGCTC-IIVAHRLSTIR-DCDEI-IVLERGKVVQRGTH 695 (710)
T ss_pred EE---CccccCCHHHHHHHHHHHHh-------cCCEE-EEEecCHHHHH-hCCEE-EEEeCCEEEEecCH
Confidence 99 99999999987655544321 11111 11248887664 49999 88999998866653
No 278
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=3.7e-14 Score=132.86 Aligned_cols=176 Identities=14% Similarity=0.177 Sum_probs=104.8
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPKS 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~~ 84 (350)
=..+++.|.+|++++|+|+||||||||+++|+|.... .+..|++|.|.++|.++.. +.. .|.++.
T Consensus 55 l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~------~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~ 128 (285)
T PRK14254 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDL------IDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQK 128 (285)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCc------ccCCCCceEEEECCEEccccccchHhhhccEEEEecC
Confidence 3678889999999999999999999999999999310 0001689999999876421 111 122222
Q ss_pred -CCCcceeeeeeccccccccc-CccccchHHHHHHHHH---------------------HHHHHHhhc-CCCceeeecCC
Q 018809 85 -AVPAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 85 -~~~~~l~~~D~~g~~~~~~~-~~~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~vl~ld~~ 140 (350)
.... .++.|+..+...... ......+....++..+ .-+.+++++ .+|+++++|
T Consensus 129 ~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLD-- 205 (285)
T PRK14254 129 PNPFP-KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMD-- 205 (285)
T ss_pred CccCc-CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe--
Confidence 1111 133333322110000 0000001111111110 115577777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+ . ..+... +|+...+..+|+++..+|++|+++..++
T Consensus 206 -EPts~LD~~~~~~l~~~L~~~~~---~--~tiii~-tH~~~~i~~~~dri~v~l~~G~i~~~g~ 263 (285)
T PRK14254 206 -EPASALDPVATSKIEDLIEELAE---E--YTVVIV-THNMQQAARISDKTAVFLTGGELVEFDD 263 (285)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHhc---C--CEEEEE-eCCHHHHHhhcCEEEEEeeCCEEEEeCC
Confidence 99999999987666655443321 1 122122 4999999999998634578898775543
No 279
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=2e-14 Score=146.00 Aligned_cols=166 Identities=17% Similarity=0.225 Sum_probs=102.1
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcc-hhHHHhhccCCCCCCcceeee
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-FEWLCQLFKPKSAVPAFLEIH 93 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~-l~~l~~~~~~~~~~~~~l~~~ 93 (350)
.+++.++.+|++++|+||||||||||+++|+|. .+|++|.|.+++.. +.++.+-. ....+..+++.
T Consensus 336 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~-----------~~p~~G~i~~~~~~~i~~~~q~~--~~~~~~~~t~~ 402 (530)
T PRK15064 336 KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE-----------LEPDSGTVKWSENANIGYYAQDH--AYDFENDLTLF 402 (530)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCceEEEEEcccc--cccCCCCCcHH
Confidence 567899999999999999999999999999999 58999999987732 21111100 00111123333
Q ss_pred eecccccccccCccccchHHHHHHH---------------HHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHH
Q 018809 94 DIAGLVRGAHEGQGLGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLK 157 (350)
Q Consensus 94 D~~g~~~~~~~~~~~~~~~l~~l~~---------------~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~ 157 (350)
+.................+++.+.. -..-+.+++++ .+|+++++| ||++++|....+.+..
T Consensus 403 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~l~~ 479 (530)
T PRK15064 403 DWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMD---EPTNHMDMESIESLNM 479 (530)
T ss_pred HHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHHHH
Confidence 3322110000000000111111110 00115567777 799999999 9999999998766555
Q ss_pred HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc-ccCC
Q 018809 158 DIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-RLGD 205 (350)
Q Consensus 158 ~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~-~~~~ 205 (350)
.+..+ ...+... +|+...+..+|+++ ..|.+|+++ ..++
T Consensus 480 ~l~~~-------~~tvi~v-sHd~~~~~~~~d~i-~~l~~g~i~~~~g~ 519 (530)
T PRK15064 480 ALEKY-------EGTLIFV-SHDREFVSSLATRI-IEITPDGVVDFSGT 519 (530)
T ss_pred HHHHC-------CCEEEEE-eCCHHHHHHhCCEE-EEEECCeEEEcCCC
Confidence 43221 1122122 49999999999999 888889876 4454
No 280
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=1.2e-14 Score=134.54 Aligned_cols=173 Identities=18% Similarity=0.189 Sum_probs=104.7
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-----cceEEEeCCcchhH-------HHh--h
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEW-------LCQ--L 79 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p-----~~G~i~~~~~~l~~-------l~~--~ 79 (350)
=.++++++++|++++|+|+||||||||+++|+|.. +| ..|.+.++|.++.. +.. .
T Consensus 23 l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-----------~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~ 91 (261)
T PRK14258 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN-----------ELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVS 91 (261)
T ss_pred eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc-----------CCCCCccccceEEECCEEhhccccchHHhhccEE
Confidence 36789999999999999999999999999999994 44 47899988865421 111 1
Q ss_pred ccCCCCCCcceeeeeeccccccccc--C-ccccchHHHHHHHHH---------------------HHHHHHhhc-CCCce
Q 018809 80 FKPKSAVPAFLEIHDIAGLVRGAHE--G-QGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDI 134 (350)
Q Consensus 80 ~~~~~~~~~~l~~~D~~g~~~~~~~--~-~~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~v 134 (350)
|.++.......++.|+..+...... . ..........++..+ ..+.+++++ .+|++
T Consensus 92 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~v 171 (261)
T PRK14258 92 MVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKV 171 (261)
T ss_pred EEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 2222211111344444332110000 0 000000111111111 115577777 89999
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhc-----CCccccCC
Q 018809 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD-----GKDVRLGD 205 (350)
Q Consensus 135 l~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~-----g~~~~~~~ 205 (350)
+++| ||++++|....+.+...+..+.+. ....+.. .+|+...+..+||++ .+|++ |+++..++
T Consensus 172 llLD---EP~~~LD~~~~~~l~~~l~~l~~~---~~~tiii-vsH~~~~i~~~~d~i-~~l~~~~~~~G~i~~~~~ 239 (261)
T PRK14258 172 LLMD---EPCFGLDPIASMKVESLIQSLRLR---SELTMVI-VSHNLHQVSRLSDFT-AFFKGNENRIGQLVEFGL 239 (261)
T ss_pred EEEe---CCCccCCHHHHHHHHHHHHHHHHh---CCCEEEE-EECCHHHHHHhcCEE-EEEccCCCcCceEEEeCC
Confidence 9999 999999999876655554333211 1112212 249999999999999 88898 88776544
No 281
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=5.7e-14 Score=129.27 Aligned_cols=177 Identities=15% Similarity=0.155 Sum_probs=106.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-------Hh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-------CQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-------~~--~~~~~ 83 (350)
.=.++++.+.+|++++|+|+||||||||+++|+|.... .| ..+.+|.|.++|+++... .. .|.++
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~---~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q 94 (253)
T PRK14261 21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL---IP---GCRITGDILYNGENIMDSGADVVALRRKIGMVFQ 94 (253)
T ss_pred eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC---CC---CCCcceEEEECCEEccccccchhhhhceEEEEec
Confidence 34678899999999999999999999999999998310 00 012489999998765321 11 12222
Q ss_pred CCCCcceeeeeeccccccccc--Cc-cccchHHHHHHHHH---------------------HHHHHHhhc-CCCceeeec
Q 018809 84 SAVPAFLEIHDIAGLVRGAHE--GQ-GLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 84 ~~~~~~l~~~D~~g~~~~~~~--~~-~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~vl~ld 138 (350)
.......++.|+..+...... .. .......+.++..+ .-+.+++++ .+|+++++|
T Consensus 95 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 174 (253)
T PRK14261 95 RPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMD 174 (253)
T ss_pred CCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 211111244444333211100 00 00001111111111 115577777 899999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+ ...+... +|+...+.++++++ .+|.+|+++..++
T Consensus 175 ---EP~~gLD~~~~~~l~~~l~~~~~-----~~tvii~-sh~~~~~~~~~d~v-~~l~~G~i~~~g~ 231 (253)
T PRK14261 175 ---EPCSALDPIATAKIEDLIEDLKK-----EYTVIIV-THNMQQAARVSDYT-GFMYLGKLIEFDK 231 (253)
T ss_pred ---CCcccCCHHHHHHHHHHHHHHhh-----CceEEEE-EcCHHHHHhhCCEE-EEEECCEEEEcCC
Confidence 99999999987666555443321 1122122 49999999999999 7889998775544
No 282
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=2.4e-14 Score=131.59 Aligned_cols=174 Identities=14% Similarity=0.190 Sum_probs=105.7
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC--cceEEEeCCcchhH-------HHh--hccC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP--NEARVNIPDERFEW-------LCQ--LFKP 82 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p--~~G~i~~~~~~l~~-------l~~--~~~~ 82 (350)
=.+++.++++|+++||+|+||||||||+++|+|.... .+| ++|.|.++|.++.. ... .|.+
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~--------~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~ 90 (250)
T PRK14245 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDL--------IPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVF 90 (250)
T ss_pred EeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcc--------cCCCCCceEEEECCEecccccccHHHHhhheEEEe
Confidence 3577889999999999999999999999999996200 123 58999999876532 111 1222
Q ss_pred CCCCCcceeeeeecccccccc---cCccccchHHHHHHHHH---------------------HHHHHHhhc-CCCceeee
Q 018809 83 KSAVPAFLEIHDIAGLVRGAH---EGQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 83 ~~~~~~~l~~~D~~g~~~~~~---~~~~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~vl~l 137 (350)
+.......++.|+..+..... ........+.+.++..+ .-+.+++++ .+|+++++
T Consensus 91 q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 170 (250)
T PRK14245 91 QRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLM 170 (250)
T ss_pred cCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 221111124444433211000 00000011111111110 115577777 89999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++++|....+.+...+..+.+ ...+... +|+...+.++||++ .+|.+|+++..++
T Consensus 171 D---EPt~~LD~~~~~~l~~~l~~~~~-----~~tiiiv-tH~~~~~~~~~d~v-~~l~~G~~~~~~~ 228 (250)
T PRK14245 171 D---EPASALDPISTAKVEELIHELKK-----DYTIVIV-THNMQQAARVSDKT-AFFYMGEMVEYDD 228 (250)
T ss_pred e---CCCccCCHHHHHHHHHHHHHHhc-----CCeEEEE-eCCHHHHHhhCCEE-EEEECCEEEEECC
Confidence 9 99999999987666555443311 1122122 49999999999999 8889998876654
No 283
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.45 E-value=2.8e-14 Score=146.67 Aligned_cols=165 Identities=18% Similarity=0.260 Sum_probs=108.1
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~~ 86 (350)
=++++.++++|++++|+|++|||||||+++|+|. . |.+|.|.++|.++..+. . .|.+|...
T Consensus 366 L~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~-----------~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~ 433 (588)
T PRK11174 366 AGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF-----------L-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQ 433 (588)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------C-CCCcEEEECCEecccCCHHHHHhheEEecCCCc
Confidence 3677889999999999999999999999999999 6 88999999997664322 1 24455443
Q ss_pred CcceeeeeecccccccccCccccchHHHHHHHH---HH-------------------------HHHHHhhc-CCCceeee
Q 018809 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV---DG-------------------------IFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~---d~-------------------------~l~vv~a~-~~~~vl~l 137 (350)
-..-++.|+..+....... .+..+.++.+ +. -+.++||+ .+|+++++
T Consensus 434 LF~~TI~eNI~~g~~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliL 509 (588)
T PRK11174 434 LPHGTLRDNVLLGNPDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLL 509 (588)
T ss_pred CCCcCHHHHhhcCCCCCCH----HHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3344566665554221110 0111111111 10 05677887 89999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++.+|..++..+...+..+.+ .+++ .-.+|....+ ..+|+| ..|++|+++..|+
T Consensus 510 D---E~TSaLD~~te~~i~~~l~~~~~-----~~Tv-IiItHrl~~i-~~aD~I-ivl~~G~i~e~G~ 566 (588)
T PRK11174 510 D---EPTASLDAHSEQLVMQALNAASR-----RQTT-LMVTHQLEDL-AQWDQI-WVMQDGQIVQQGD 566 (588)
T ss_pred e---CCccCCCHHHHHHHHHHHHHHhC-----CCEE-EEEecChHHH-HhCCEE-EEEeCCeEeecCC
Confidence 9 99999999987655544322110 0111 1124888655 458988 8889998876665
No 284
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=3.3e-14 Score=132.61 Aligned_cols=176 Identities=16% Similarity=0.175 Sum_probs=106.2
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH------Hh--hccCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------CQ--LFKPKSA 85 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l------~~--~~~~~~~ 85 (350)
-.+++..+.+|++++|+|+||||||||+++|+|... |.. -.|.+|.|.++|.++... .. .|.++..
T Consensus 37 l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-----p~~-~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~ 110 (276)
T PRK14271 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND-----KVS-GYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRP 110 (276)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC-----cCC-CCCCceEEEECCEEccccchhHHHhhheEEeccCC
Confidence 367889999999999999999999999999999831 000 014799999998664311 11 1333322
Q ss_pred CCcceeeeeeccccccccc--C-cccc---chHHHHHHH------------------HHHHHHHHhhc-CCCceeeecCC
Q 018809 86 VPAFLEIHDIAGLVRGAHE--G-QGLG---NSFLSHIRA------------------VDGIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~--~-~~~~---~~~l~~l~~------------------~d~~l~vv~a~-~~~~vl~ld~~ 140 (350)
.....++.++..+...... . .... ...+..+.. ...-+.+++++ .+|+++++|
T Consensus 111 ~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLD-- 188 (276)
T PRK14271 111 NPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLD-- 188 (276)
T ss_pred ccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc--
Confidence 1111344444332210000 0 0000 000111100 00115677887 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|....+.+...+..+.+ ...+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 189 -EPt~~LD~~~~~~l~~~L~~~~~-----~~tiiiv-sH~~~~~~~~~dri-~~l~~G~i~~~g~ 245 (276)
T PRK14271 189 -EPTSALDPTTTEKIEEFIRSLAD-----RLTVIIV-THNLAQAARISDRA-ALFFDGRLVEEGP 245 (276)
T ss_pred -CCcccCCHHHHHHHHHHHHHHhc-----CCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999887666555433211 1122122 49999999999999 8889998776544
No 285
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.44 E-value=5e-14 Score=125.47 Aligned_cols=47 Identities=26% Similarity=0.301 Sum_probs=43.3
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~ 70 (350)
.-.+++.++++|++++|+|+||||||||+++|+|. .+|++|.|.++|
T Consensus 20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~-----------~~~~~G~i~~~g 66 (204)
T cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE-----------LEKLSGSVSVPG 66 (204)
T ss_pred eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc-----------CCCCCCeEEEcC
Confidence 44678899999999999999999999999999999 589999999887
No 286
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.44 E-value=2.3e-14 Score=145.14 Aligned_cols=173 Identities=18% Similarity=0.261 Sum_probs=106.9
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeC-Ccc---hh--------HHHh--h
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DER---FE--------WLCQ--L 79 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~-~~~---l~--------~l~~--~ 79 (350)
-.+++..+++|++++|+|+||||||||+++|+|. .+|.+|.|.++ |.. +. .... .
T Consensus 300 l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~ 368 (520)
T TIGR03269 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGV-----------LEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIG 368 (520)
T ss_pred EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEEecCCccccccccchhhHHHHhhhEE
Confidence 3678899999999999999999999999999999 57899999985 421 11 1111 1
Q ss_pred ccCCC-CCCcceeeeeecccccc--ccc--CccccchHHHHHHHH-------------------HHHHHHHhhc-CCCce
Q 018809 80 FKPKS-AVPAFLEIHDIAGLVRG--AHE--GQGLGNSFLSHIRAV-------------------DGIFHVLRAF-EDPDI 134 (350)
Q Consensus 80 ~~~~~-~~~~~l~~~D~~g~~~~--~~~--~~~~~~~~l~~l~~~-------------------d~~l~vv~a~-~~~~v 134 (350)
|.++. .....+++.|...+... ... .......+++.+... ..-+.+++++ .+|++
T Consensus 369 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~l 448 (520)
T TIGR03269 369 ILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRI 448 (520)
T ss_pred EEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 22222 22223444444322100 000 000000111111110 0115577777 79999
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 135 l~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+++| ||++++|....+.+...+..+.+. ....+... +|+...+..+|+++ .+|.+|+++..++
T Consensus 449 LllD---EPt~~LD~~~~~~l~~~l~~l~~~---~g~tvi~v-sHd~~~~~~~~d~i-~~l~~G~i~~~g~ 511 (520)
T TIGR03269 449 VILD---EPTGTMDPITKVDVTHSILKAREE---MEQTFIIV-SHDMDFVLDVCDRA-ALMRDGKIVKIGD 511 (520)
T ss_pred EEEe---CCcccCCHHHHHHHHHHHHHHHHH---cCcEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9999 999999999987666655433221 11122122 49999999999999 8889998776543
No 287
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=7.3e-14 Score=138.00 Aligned_cols=171 Identities=18% Similarity=0.248 Sum_probs=111.2
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-------hccCCC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKS 84 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-------~~~~~~ 84 (350)
|.-.+++..+++|+.++|||++|||||||+++|+|. .+|.+|.|.++|.+++.+.. .+.+|+
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~-----------~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~ 403 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF-----------LAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQN 403 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCc-----------CCCCCceEEECCccccccCHHHHHhHeeeeCCC
Confidence 566788999999999999999999999999999999 68899999999987654431 233343
Q ss_pred CCCcceeeeeecccccccccCccccchHHHH-------------------------HHHHHHHHHHHhhc-CCCceeeec
Q 018809 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSH-------------------------IRAVDGIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~-------------------------l~~~d~~l~vv~a~-~~~~vl~ld 138 (350)
..-..-++.|+..+.+.....+.+ .+.++. ..++. -+.++||+ .+++++++|
T Consensus 404 p~lf~gTireNi~l~~~~~s~e~i-~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~Q-RlaLARAll~~~~l~llD 481 (559)
T COG4988 404 PYLFAGTIRENILLARPDASDEEI-IAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQ-RLALARALLSPASLLLLD 481 (559)
T ss_pred CccccccHHHHhhccCCcCCHHHH-HHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHH-HHHHHHHhcCCCCEEEec
Confidence 322233444444443321100000 000000 00000 14567887 688999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
||+.++|..+++++...+..+.+. +++.. .+|.+.. ..-+|+| -+|++|+++..|..
T Consensus 482 ---EpTA~LD~etE~~i~~~l~~l~~~-----ktvl~-itHrl~~-~~~~D~I-~vld~G~l~~~g~~ 538 (559)
T COG4988 482 ---EPTAHLDAETEQIILQALQELAKQ-----KTVLV-ITHRLED-AADADRI-VVLDNGRLVEQGTH 538 (559)
T ss_pred ---CCccCCCHhHHHHHHHHHHHHHhC-----CeEEE-EEcChHH-HhcCCEE-EEecCCceeccCCH
Confidence 999999999988877766544332 12211 2487755 3557888 88899998876653
No 288
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.44 E-value=2e-14 Score=145.58 Aligned_cols=177 Identities=18% Similarity=0.209 Sum_probs=104.9
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCC----------------------
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD---------------------- 70 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~---------------------- 70 (350)
.-.+++.++.+|+++||+|+||||||||+++|+|... ..|.+|.|.+++
T Consensus 15 ~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---------~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (520)
T TIGR03269 15 VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQ---------YEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVC 85 (520)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccc---------CCCCceEEEEeccccccccccccccccccccccc
Confidence 3467889999999999999999999999999999820 158889988752
Q ss_pred -cch---------------hHHHh--hccCCC--CCCcceeeeeecccccccc--cCcc---ccchHHHHHHHHHH----
Q 018809 71 -ERF---------------EWLCQ--LFKPKS--AVPAFLEIHDIAGLVRGAH--EGQG---LGNSFLSHIRAVDG---- 121 (350)
Q Consensus 71 -~~l---------------~~l~~--~~~~~~--~~~~~l~~~D~~g~~~~~~--~~~~---~~~~~l~~l~~~d~---- 121 (350)
..+ ..... .|.++. .....+++.+...+..... .... ....+++.+...+.
T Consensus 86 g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 165 (520)
T TIGR03269 86 GGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHI 165 (520)
T ss_pred cccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC
Confidence 111 00000 111121 1111223333332211000 0000 00011111111111
Q ss_pred ----------HHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 018809 122 ----------IFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQR 190 (350)
Q Consensus 122 ----------~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~ 190 (350)
-+.+++++ .+|+++++| ||++.+|....+.+...+..+.+. ....+... +|+...+..+|++
T Consensus 166 ~~~LSgGq~qrv~iA~al~~~p~lllLD---EPt~~LD~~~~~~l~~~l~~l~~~---~g~tviiv-tHd~~~~~~~~d~ 238 (520)
T TIGR03269 166 ARDLSGGEKQRVVLARQLAKEPFLFLAD---EPTGTLDPQTAKLVHNALEEAVKA---SGISMVLT-SHWPEVIEDLSDK 238 (520)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEee---CCcccCCHHHHHHHHHHHHHHHHh---cCcEEEEE-eCCHHHHHHhcCE
Confidence 15677777 899999999 999999999987666655433221 11222122 4999999999999
Q ss_pred HHHHhhcCCccccCCC
Q 018809 191 VKAWLQDGKDVRLGDW 206 (350)
Q Consensus 191 i~~~L~~g~~~~~~~~ 206 (350)
+ ..|++|+++..++.
T Consensus 239 i-~~l~~G~i~~~g~~ 253 (520)
T TIGR03269 239 A-IWLENGEIKEEGTP 253 (520)
T ss_pred E-EEEeCCEEeeecCH
Confidence 9 88999988765543
No 289
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=5.3e-14 Score=131.10 Aligned_cols=177 Identities=18% Similarity=0.201 Sum_probs=104.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~ 83 (350)
.-.++++.+.+|++++|+|+||||||||+++|+|..... | ..|..|.|.++|.++.. +.. .|.++
T Consensus 35 ~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~---~---~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q 108 (274)
T PRK14265 35 ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLI---P---GAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQ 108 (274)
T ss_pred EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccc---c---CCCcCceEEECCEecccccchhHHHhhcEEEEcc
Confidence 346788999999999999999999999999999983100 0 01358999999876521 111 12222
Q ss_pred CCCCcceeeeeeccccccccc-CccccchHHHHHHHH-------H--------------HHHHHHhhc-CCCceeeecCC
Q 018809 84 SAVPAFLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAV-------D--------------GIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 84 ~~~~~~l~~~D~~g~~~~~~~-~~~~~~~~l~~l~~~-------d--------------~~l~vv~a~-~~~~vl~ld~~ 140 (350)
.......++.|...+...... ...........++.+ + .-+.+++++ .+|+++++|
T Consensus 109 ~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLD-- 186 (274)
T PRK14265 109 RPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMD-- 186 (274)
T ss_pred CCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEe--
Confidence 211111234444332210000 000000000011110 0 115577777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhh---------cCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ---------DGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~---------~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+ ...+... +|+...+..+||++ .+|. +|+++..++
T Consensus 187 -EPt~~LD~~~~~~l~~~L~~~~~-----~~tiii~-sH~~~~~~~~~d~i-~~l~~~~~~~~~~~G~~~~~g~ 252 (274)
T PRK14265 187 -EPCSALDPISTRQVEELCLELKE-----QYTIIMV-THNMQQASRVADWT-AFFNTEIDEYGKRRGKLVEFSP 252 (274)
T ss_pred -CCcccCCHHHHHHHHHHHHHHhc-----CCEEEEE-eCCHHHHHHhCCEE-EEEecccccccccCceEEEeCC
Confidence 99999999997766665443321 1122122 49999999999999 7776 677765544
No 290
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.44 E-value=2.4e-13 Score=123.02 Aligned_cols=164 Identities=15% Similarity=0.055 Sum_probs=97.0
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh--hccCCC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKS 84 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~--~~~~~~ 84 (350)
+.-.++++++++|++++|+|+||||||||+++|+|. .+|.+|.|.++|..+.. ... .|.++.
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 89 (225)
T PRK10247 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL-----------ISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQT 89 (225)
T ss_pred eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCCeEEECCEEcCcCCHHHHHhccEEEecc
Confidence 345788999999999999999999999999999998 58999999999865421 111 122222
Q ss_pred CCCcceeeeeecccccccc---cCccccchHHHHHHHHH---------------HHHHHHhhc-CCCceeeecCCCCCCc
Q 018809 85 AVPAFLEIHDIAGLVRGAH---EGQGLGNSFLSHIRAVD---------------GIFHVLRAF-EDPDIIHVDDSVDPVR 145 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~---~~~~~~~~~l~~l~~~d---------------~~l~vv~a~-~~~~vl~ld~~~eP~~ 145 (350)
......++.|+..+..... ........+++.+...+ .-+.+++++ .+|+++++| ||+.
T Consensus 90 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EPt~ 166 (225)
T PRK10247 90 PTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLD---EITS 166 (225)
T ss_pred cccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCcc
Confidence 1111124444433211000 00000111222221111 115577777 899999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHh
Q 018809 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWL 195 (350)
Q Consensus 146 ~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L 195 (350)
++|....+.+...+..+.+. ....+... +|+...+. .||++ ..|
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~---~~~tvii~-sh~~~~~~-~~d~i-~~l 210 (225)
T PRK10247 167 ALDESNKHNVNEIIHRYVRE---QNIAVLWV-THDKDEIN-HADKV-ITL 210 (225)
T ss_pred cCCHHHHHHHHHHHHHHHHh---cCCEEEEE-ECChHHHH-hCCEE-EEE
Confidence 99998876555544332211 11111122 38888775 58887 555
No 291
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.44 E-value=2.8e-14 Score=143.95 Aligned_cols=170 Identities=16% Similarity=0.233 Sum_probs=105.4
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH------HHh--hccCCC-
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LCQ--LFKPKS- 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~------l~~--~~~~~~- 84 (350)
-.+++.++++|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++.. ... .|.++.
T Consensus 20 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~ 88 (501)
T PRK11288 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGN-----------YQPDAGSILIDGQEMRFASTTAALAAGVAIIYQEL 88 (501)
T ss_pred EeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCEEEECCEECCCCCHHHHHhCCEEEEEech
Confidence 3678899999999999999999999999999999 57899999998865421 111 122222
Q ss_pred CCCcceeeeeecccccccc-cC----cc---ccchHHHHHHHH--------------HHHHHHHhhc-CCCceeeecCCC
Q 018809 85 AVPAFLEIHDIAGLVRGAH-EG----QG---LGNSFLSHIRAV--------------DGIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~-~~----~~---~~~~~l~~l~~~--------------d~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
.....+++.|+..+..... .+ .. ....+++.+... ..-+.+++++ .+|+++++|
T Consensus 89 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD--- 165 (501)
T PRK11288 89 HLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFD--- 165 (501)
T ss_pred hccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEc---
Confidence 1222234444433221000 00 00 000011111000 0015567777 799999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcccc
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~ 203 (350)
||++.+|....+.+...+..+.+ ....+... +|+...+..+||++ .+|.+|+++..
T Consensus 166 EPt~~LD~~~~~~l~~~l~~~~~----~g~tiiii-tHd~~~~~~~~d~i-~~l~~G~i~~~ 221 (501)
T PRK11288 166 EPTSSLSAREIEQLFRVIRELRA----EGRVILYV-SHRMEEIFALCDAI-TVFKDGRYVAT 221 (501)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEee
Confidence 99999999987665554433211 11112122 49999999999999 88899987643
No 292
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.44 E-value=1e-13 Score=139.74 Aligned_cols=170 Identities=15% Similarity=0.146 Sum_probs=105.8
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-cceEEEeCCcchhH------HHh--hccCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-NEARVNIPDERFEW------LCQ--LFKPKS 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p-~~G~i~~~~~~l~~------l~~--~~~~~~ 84 (350)
-.+++.++.+|+++||+|+||||||||+++|+|. .+| .+|.|.++|+++.. +.. .|.++.
T Consensus 276 l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~-----------~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 344 (500)
T TIGR02633 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGA-----------YPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPED 344 (500)
T ss_pred cccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCC-----------CCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcc
Confidence 3678899999999999999999999999999999 464 79999998865421 111 122222
Q ss_pred ----CCCcceeeeeecccccc--ccc----C----ccccchHHHHHHHHH---------------HHHHHHhhc-CCCce
Q 018809 85 ----AVPAFLEIHDIAGLVRG--AHE----G----QGLGNSFLSHIRAVD---------------GIFHVLRAF-EDPDI 134 (350)
Q Consensus 85 ----~~~~~l~~~D~~g~~~~--~~~----~----~~~~~~~l~~l~~~d---------------~~l~vv~a~-~~~~v 134 (350)
.....+++.+...+... ... . ......+++.+...+ .-+.+++++ .+|++
T Consensus 345 ~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~l 424 (500)
T TIGR02633 345 RKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRV 424 (500)
T ss_pred hhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCE
Confidence 12222333333322100 000 0 000011111111110 115577777 79999
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcccc
Q 018809 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (350)
Q Consensus 135 l~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~ 203 (350)
+++| ||++++|....+.+...+..+.+ ....+... +|+...+..+|+++ .+|.+|+++..
T Consensus 425 llLD---EPt~~LD~~~~~~l~~~l~~l~~----~g~tviiv-sHd~~~~~~~~d~v-~~l~~G~i~~~ 484 (500)
T TIGR02633 425 LILD---EPTRGVDVGAKYEIYKLINQLAQ----EGVAIIVV-SSELAEVLGLSDRV-LVIGEGKLKGD 484 (500)
T ss_pred EEEc---CCCCCcCHhHHHHHHHHHHHHHh----CCCEEEEE-CCCHHHHHHhCCEE-EEEECCEEEEE
Confidence 9999 99999999987666655443321 11122122 49999999999999 78889987754
No 293
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.44 E-value=1.1e-13 Score=123.45 Aligned_cols=165 Identities=17% Similarity=0.243 Sum_probs=100.0
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKS 84 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~ 84 (350)
+.-.+++.++.+|++++|+|+||+|||||+++|+|. .+|.+|.|.++|..+... .. .|.++.
T Consensus 22 ~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 90 (207)
T cd03369 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF-----------LEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQD 90 (207)
T ss_pred ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCCeEEECCEEhHHCCHHHHHhhEEEEecC
Confidence 344678899999999999999999999999999999 589999999998765321 11 122222
Q ss_pred CCCcceeeeeecccccccccCccccchHHHHHHH----------HHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHH
Q 018809 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA----------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAE 153 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~----------~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~e 153 (350)
......++.++..+..... ...+.+.++. ...-+.+++++ .+|+++++| ||++.+|....+
T Consensus 91 ~~~~~~tv~~~l~~~~~~~-----~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllD---EP~~~LD~~~~~ 162 (207)
T cd03369 91 PTLFSGTIRSNLDPFDEYS-----DEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLD---EATASIDYATDA 162 (207)
T ss_pred CcccCccHHHHhcccCCCC-----HHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEe---CCcccCCHHHHH
Confidence 1111123333332211000 0001111110 01114566776 799999999 999999998865
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcccc
Q 018809 154 LRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (350)
Q Consensus 154 l~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~ 203 (350)
.+...+..+ .. ...+.. .+|+...+.. |+++ ..|.+|++...
T Consensus 163 ~l~~~l~~~----~~-~~tiii-~th~~~~~~~-~d~v-~~l~~g~i~~~ 204 (207)
T cd03369 163 LIQKTIREE----FT-NSTILT-IAHRLRTIID-YDKI-LVMDAGEVKEY 204 (207)
T ss_pred HHHHHHHHh----cC-CCEEEE-EeCCHHHHhh-CCEE-EEEECCEEEec
Confidence 544433221 10 111111 2488888765 8888 77788876543
No 294
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=5.5e-14 Score=130.31 Aligned_cols=177 Identities=15% Similarity=0.185 Sum_probs=104.5
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchh---------HHHh--hcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE---------WLCQ--LFK 81 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~---------~l~~--~~~ 81 (350)
.-.++++++.+|++++|+|+||||||||+++|+|... ++|. .|.+|.|.++|..+. .+.. .|.
T Consensus 31 vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~---~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 104 (265)
T PRK14252 31 ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPG---NHYEGEIILHPDNVNILSPEVDPIEVRMRISMV 104 (265)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCC---CCcccEEEEcCccccccccccCHHHHhccEEEE
Confidence 3477888999999999999999999999999999831 0000 037899999875432 1111 122
Q ss_pred CCCCCCcceeeeeecccccccc---cCccccchHHHHHHHHH---------------------HHHHHHhhc-CCCceee
Q 018809 82 PKSAVPAFLEIHDIAGLVRGAH---EGQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 82 ~~~~~~~~l~~~D~~g~~~~~~---~~~~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~vl~ 136 (350)
++.......++.|+..+..... ......+.....+..++ .-+.+++++ .+|++++
T Consensus 105 ~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 184 (265)
T PRK14252 105 FQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILL 184 (265)
T ss_pred ccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 3221111123444332211000 00000011111111111 115577777 8999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+| ||++++|....+.+...+..+.+ ...+.. .+|+...+..+|+++ ..|.+|+++..++
T Consensus 185 lD---EPt~gLD~~~~~~l~~~l~~l~~-----~~tiii-vth~~~~~~~~~d~i-~~l~~G~i~~~g~ 243 (265)
T PRK14252 185 FD---EPTSALDPIATASIEELISDLKN-----KVTILI-VTHNMQQAARVSDYT-AYMYMGELIEFGA 243 (265)
T ss_pred Ee---CCCccCCHHHHHHHHHHHHHHHh-----CCEEEE-EecCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99 99999999887655554433211 111212 249999999999999 8889998875543
No 295
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.43 E-value=5e-13 Score=115.27 Aligned_cols=144 Identities=17% Similarity=0.218 Sum_probs=88.2
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeee
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIH 93 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~ 93 (350)
=.+++.++.+|++++|+|+||||||||+++|+|. .+|.+|.|.+++.+ .+ .|.++.......++.
T Consensus 17 l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~-----------~~~~~G~i~~~~~~--~i--~~~~q~~~~~~~tv~ 81 (166)
T cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL-----------WPWGSGRIGMPEGE--DL--LFLPQRPYLPLGTLR 81 (166)
T ss_pred eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCCc--eE--EEECCCCccccccHH
Confidence 3678899999999999999999999999999999 58899999998731 11 111221111123444
Q ss_pred eecccccccccCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018809 94 DIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKS 172 (350)
Q Consensus 94 D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~ 172 (350)
|+..+.. ....+-++ .+++ .+++++ .+|+++++| ||++++|....+.+...+.. +...
T Consensus 82 ~nl~~~~--~~~LS~G~--~~rv-------~laral~~~p~~lllD---EPt~~LD~~~~~~l~~~l~~-------~~~t 140 (166)
T cd03223 82 EQLIYPW--DDVLSGGE--QQRL-------AFARLLLHKPKFVFLD---EATSALDEESEDRLYQLLKE-------LGIT 140 (166)
T ss_pred HHhhccC--CCCCCHHH--HHHH-------HHHHHHHcCCCEEEEE---CCccccCHHHHHHHHHHHHH-------hCCE
Confidence 4433210 01111122 2333 344444 599999999 99999999886554443321 1111
Q ss_pred HhhcccccHHHHHHHHHHHHHHhh
Q 018809 173 MKRSNDKQLKIEHELCQRVKAWLQ 196 (350)
Q Consensus 173 ~~~~~~h~~~~~~~l~~~i~~~L~ 196 (350)
+.. .+|+... ...||++ ..|+
T Consensus 141 iii-vsh~~~~-~~~~d~i-~~l~ 161 (166)
T cd03223 141 VIS-VGHRPSL-WKFHDRV-LDLD 161 (166)
T ss_pred EEE-EeCChhH-HhhCCEE-EEEc
Confidence 111 2488754 4577776 4443
No 296
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.43 E-value=4.6e-14 Score=142.33 Aligned_cols=173 Identities=15% Similarity=0.192 Sum_probs=106.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC--cceEEEeCCcchhHH------Hh--hccC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP--NEARVNIPDERFEWL------CQ--LFKP 82 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p--~~G~i~~~~~~l~~l------~~--~~~~ 82 (350)
.-.+++.++.+|+++||+|+||||||||+++|+|. .+| .+|.|.++|..+... .. .|.+
T Consensus 16 il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~-----------~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 84 (500)
T TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGV-----------YPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIH 84 (500)
T ss_pred eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 34678999999999999999999999999999998 344 799999998654211 11 1222
Q ss_pred CC-CCCcceeeeeecccccccc------cCcc---ccchHHHHHHH---------------HHHHHHHHhhc-CCCceee
Q 018809 83 KS-AVPAFLEIHDIAGLVRGAH------EGQG---LGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 83 ~~-~~~~~l~~~D~~g~~~~~~------~~~~---~~~~~l~~l~~---------------~d~~l~vv~a~-~~~~vl~ 136 (350)
+. .....+++.|+..+..... .... ....+++.+.. -..-+.+++++ .+|++++
T Consensus 85 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lll 164 (500)
T TIGR02633 85 QELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLI 164 (500)
T ss_pred eccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence 22 1222334444432211000 0000 00011111100 00115577777 7999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+| ||++++|......+...+..+.+ ....+... +|+...+..+||++ .+|.+|+++..++
T Consensus 165 LD---EPt~~LD~~~~~~l~~~l~~l~~----~g~tviii-tHd~~~~~~~~d~i-~~l~~G~i~~~~~ 224 (500)
T TIGR02633 165 LD---EPSSSLTEKETEILLDIIRDLKA----HGVACVYI-SHKLNEVKAVCDTI-CVIRDGQHVATKD 224 (500)
T ss_pred Ee---CCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEE-eCcHHHHHHhCCEE-EEEeCCeEeeecC
Confidence 99 99999999987666555443311 11112122 49999999999999 8899998875543
No 297
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=6.6e-14 Score=132.45 Aligned_cols=178 Identities=16% Similarity=0.220 Sum_probs=106.3
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~ 83 (350)
.-..+++++.+|++++|+|+||||||||+++|+|.... ++ ..|.+|.|.++|.++.. +.. .|.++
T Consensus 60 iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~---~~---~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q 133 (305)
T PRK14264 60 ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDR---IK---AARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQ 133 (305)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc---cC---CCCCceEEEECCEEcccccccHHHHhhceEEEcc
Confidence 34678899999999999999999999999999998310 00 01689999999865421 111 12232
Q ss_pred CCCCcceeeeeeccccccccc-----------Cc---c-ccchHHHHHHHHH---------------------HHHHHHh
Q 018809 84 SAVPAFLEIHDIAGLVRGAHE-----------GQ---G-LGNSFLSHIRAVD---------------------GIFHVLR 127 (350)
Q Consensus 84 ~~~~~~l~~~D~~g~~~~~~~-----------~~---~-~~~~~l~~l~~~d---------------------~~l~vv~ 127 (350)
.......++.|+..+...... +. . ........++..+ .-+.+++
T Consensus 134 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAr 213 (305)
T PRK14264 134 SPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIAR 213 (305)
T ss_pred CCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHH
Confidence 211111244443332210000 00 0 0001111111111 1156777
Q ss_pred hc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 128 AF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 128 a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++ .+|+++++| ||++++|......+...+..+.+ . ..+... +|+...+..+|+++..+|.+|+++..++
T Consensus 214 aL~~~p~lLLLD---EPtsgLD~~~~~~l~~~L~~~~~---~--~tiiiv-tH~~~~i~~~~d~i~~~l~~G~i~~~g~ 283 (305)
T PRK14264 214 CLAVDPEVILMD---EPASALDPIATSKIEDLIEELAE---E--YTVVVV-THNMQQAARISDQTAVFLTGGELVEYDD 283 (305)
T ss_pred HHhcCCCEEEEe---CCcccCCHHHHHHHHHHHHHHhc---C--CEEEEE-EcCHHHHHHhcCEEEEEecCCEEEEeCC
Confidence 77 899999999 99999999987666555443322 1 122122 4999999999998635678998876544
No 298
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.43 E-value=9.3e-14 Score=128.27 Aligned_cols=172 Identities=20% Similarity=0.274 Sum_probs=104.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCC------cchhH-----HHh--h
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD------ERFEW-----LCQ--L 79 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~------~~l~~-----l~~--~ 79 (350)
.-.++++++.+|++++|+|+||||||||+++|+|. ..|.+|.|.+.| .++.. ... .
T Consensus 25 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~-----------~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~ 93 (257)
T PRK14246 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL-----------IEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVG 93 (257)
T ss_pred eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCcCceeEcCEEEECCcccccCCHHHHhcceE
Confidence 44788999999999999999999999999999999 577776655544 33211 111 1
Q ss_pred ccCCC-CCCcceeeeeecccccccc--cCc-cccchHHHHHHHHH---------------------HHHHHHhhc-CCCc
Q 018809 80 FKPKS-AVPAFLEIHDIAGLVRGAH--EGQ-GLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPD 133 (350)
Q Consensus 80 ~~~~~-~~~~~l~~~D~~g~~~~~~--~~~-~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~ 133 (350)
|.++. ..+..+++.|+..+..... ... .....+...++..+ .-+.+++++ .+|+
T Consensus 94 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~ 173 (257)
T PRK14246 94 MVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPK 173 (257)
T ss_pred EEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 22222 2222344444443221100 000 00000111111110 115677887 8999
Q ss_pred eeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 134 vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++++| ||+.++|......+...+..+.+ ...+... +|+...+..+|+++ ..|.+|++...++
T Consensus 174 llllD---EPt~~LD~~~~~~l~~~l~~~~~-----~~tiilv-sh~~~~~~~~~d~v-~~l~~g~i~~~g~ 235 (257)
T PRK14246 174 VLLMD---EPTSMIDIVNSQAIEKLITELKN-----EIAIVIV-SHNPQQVARVADYV-AFLYNGELVEWGS 235 (257)
T ss_pred EEEEc---CCCccCCHHHHHHHHHHHHHHhc-----CcEEEEE-ECCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 99999 99999999987655555433211 1122122 49999999999999 8888898776554
No 299
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.43 E-value=5.2e-14 Score=147.33 Aligned_cols=167 Identities=20% Similarity=0.239 Sum_probs=107.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-------hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-------~~~~~~~ 85 (350)
.-++++.++++|++++|+|+||||||||+++|+|. .+|++|.|.++|.++..+.. .+.+|..
T Consensus 480 vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl-----------~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~ 548 (694)
T TIGR03375 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL-----------YQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDP 548 (694)
T ss_pred ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEEhhhCCHHHHHhccEEECCCh
Confidence 34678899999999999999999999999999999 68999999999987654321 2334433
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHH----------------------------HHHHHHHhhc-CCCceee
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~----------------------------d~~l~vv~a~-~~~~vl~ 136 (350)
....-++.|+..+....... .++.+.++.+ ..-+.++|++ .+|++++
T Consensus 549 ~lf~~TI~eNi~~~~~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ili 624 (694)
T TIGR03375 549 RLFYGTLRDNIALGAPYADD----EEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILL 624 (694)
T ss_pred hhhhhhHHHHHhCCCCCCCH----HHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 22233445544443221100 0000111110 0115577777 8999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+| ||++.+|..++..+...+..+.+ .+++ .-.+|....+ ..+|+| ..|++|+++..|+
T Consensus 625 LD---E~Ts~LD~~te~~i~~~l~~~~~-----~~T~-iiItHrl~~~-~~~D~i-ivl~~G~i~e~G~ 682 (694)
T TIGR03375 625 LD---EPTSAMDNRSEERFKDRLKRWLA-----GKTL-VLVTHRTSLL-DLVDRI-IVMDNGRIVADGP 682 (694)
T ss_pred Ee---CCCCCCCHHHHHHHHHHHHHHhC-----CCEE-EEEecCHHHH-HhCCEE-EEEeCCEEEeeCC
Confidence 99 99999999987655554322110 0111 1124888665 678999 8889999886664
No 300
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=6.8e-14 Score=129.29 Aligned_cols=172 Identities=18% Similarity=0.192 Sum_probs=104.7
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-----cceEEEeCCcchhH-------HHh--
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEW-------LCQ-- 78 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p-----~~G~i~~~~~~l~~-------l~~-- 78 (350)
.-..++..+.+|++++|+|+||||||||+++|+|.. +| .+|.|.++|+++.. +..
T Consensus 22 il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~-----------~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i 90 (259)
T PRK14260 22 AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS-----------ELEGPVKVEGVVDFFGQNIYDPRININRLRRQI 90 (259)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc-----------CcccCCccceEEEECCEeccccccchHhhhhhe
Confidence 346788999999999999999999999999999983 32 48999999875421 111
Q ss_pred hccCCCCCCcceeeeeecccccccc---cCccccchHHHHHHHHH---------------------HHHHHHhhc-CCCc
Q 018809 79 LFKPKSAVPAFLEIHDIAGLVRGAH---EGQGLGNSFLSHIRAVD---------------------GIFHVLRAF-EDPD 133 (350)
Q Consensus 79 ~~~~~~~~~~~l~~~D~~g~~~~~~---~~~~~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~ 133 (350)
.|.++.......++.++..+..... ..........+.++..+ .-+.+++++ .+|+
T Consensus 91 ~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 170 (259)
T PRK14260 91 GMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPK 170 (259)
T ss_pred EEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 1222221111134444432211000 00000000001111110 115577777 8999
Q ss_pred eeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhh-----cCCccccCC
Q 018809 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ-----DGKDVRLGD 205 (350)
Q Consensus 134 vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~-----~g~~~~~~~ 205 (350)
++++| ||++++|......+...+..+.+ ...+... +|+...+..+||++ .+|. +|+++..++
T Consensus 171 lllLD---EPt~~LD~~~~~~l~~~l~~~~~-----~~tiii~-tH~~~~i~~~~d~i-~~l~~~~~~~G~i~~~~~ 237 (259)
T PRK14260 171 VLLMD---EPCSALDPIATMKVEELIHSLRS-----ELTIAIV-THNMQQATRVSDFT-AFFSTDESRIGQMVEFGV 237 (259)
T ss_pred EEEEc---CCCccCCHHHHHHHHHHHHHHhc-----CCEEEEE-eCCHHHHHHhcCeE-EEEeccCCCCceEEEeCC
Confidence 99999 99999999987666665443321 1122122 49999999999998 7776 488776554
No 301
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=5.3e-14 Score=129.25 Aligned_cols=178 Identities=14% Similarity=0.170 Sum_probs=106.1
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKP 82 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~ 82 (350)
+.-.++++.+.+|++++|+|+||+|||||+++|+|..... +..|++|.|.++|.++.. ... .|.+
T Consensus 17 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~------~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~ 90 (250)
T PRK14266 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLI------PGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVF 90 (250)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccC------CCCCCccEEEECCEEcccccccHHHHhhheEEEe
Confidence 3447888999999999999999999999999999972100 011478999999876531 111 2223
Q ss_pred CCCCCcceeeeeeccccccccc--Ccc-ccchHHHHHHHHH---------------------HHHHHHhhc-CCCceeee
Q 018809 83 KSAVPAFLEIHDIAGLVRGAHE--GQG-LGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 83 ~~~~~~~l~~~D~~g~~~~~~~--~~~-~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~vl~l 137 (350)
+.......++.|+..+...... ... ....+...++.++ .-+.+++++ .+|+++++
T Consensus 91 q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 170 (250)
T PRK14266 91 QKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILM 170 (250)
T ss_pred cCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2211111233443322110000 000 0011111111111 015577777 89999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++++|......+...+..+. + ...+... +|+...+...++++ .+|.+|+++..++
T Consensus 171 D---EP~~gLD~~~~~~l~~~l~~~~----~-~~tiii~-sh~~~~~~~~~~~i-~~l~~G~i~~~g~ 228 (250)
T PRK14266 171 D---EPCSALDPISTTKIEDLIHKLK----E-DYTIVIV-THNMQQATRVSKYT-SFFLNGEIIESGL 228 (250)
T ss_pred c---CCCccCCHHHHHHHHHHHHHHh----c-CCeEEEE-ECCHHHHHhhcCEE-EEEECCeEEEeCC
Confidence 9 9999999988765555443321 1 1122122 49999999999988 7788898876554
No 302
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.42 E-value=5.2e-14 Score=129.05 Aligned_cols=176 Identities=16% Similarity=0.117 Sum_probs=100.9
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----H---hhccCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----C---QLFKPKS 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~---~~~~~~~ 84 (350)
.-.++++.+++|++++|+|+||||||||+++|+|... .+|.+|.|.++|.++... . ..|.++.
T Consensus 16 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---------~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~ 86 (248)
T PRK09580 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRED---------YEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQY 86 (248)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCcc---------CCCCceEEEECCCccccCCHHHHhhcceEEEecC
Confidence 3467889999999999999999999999999999820 158899999998754321 1 0111111
Q ss_pred C-CCcceeeeeeccccccc---ccCc------cccchHHHHHHH-------------------HHHHHHHHhhc-CCCce
Q 018809 85 A-VPAFLEIHDIAGLVRGA---HEGQ------GLGNSFLSHIRA-------------------VDGIFHVLRAF-EDPDI 134 (350)
Q Consensus 85 ~-~~~~l~~~D~~g~~~~~---~~~~------~~~~~~l~~l~~-------------------~d~~l~vv~a~-~~~~v 134 (350)
. ....++........... .... .+.......+.. ...-+.+++++ .+|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~i 166 (248)
T PRK09580 87 PVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPEL 166 (248)
T ss_pred chhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 1 00000000000000000 0000 000000000000 00115566777 79999
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHH-HHHHHHHhhcCCccccCCC
Q 018809 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHEL-CQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 135 l~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l-~~~i~~~L~~g~~~~~~~~ 206 (350)
+++| ||++++|....+.+...+..+.+ ....+... +|+...+..+ ++++ .+|.+|+++..++.
T Consensus 167 llLD---EPt~~LD~~~~~~l~~~l~~l~~----~~~tiii~-sH~~~~~~~~~~d~i-~~l~~g~i~~~g~~ 230 (248)
T PRK09580 167 CILD---ESDSGLDIDALKIVADGVNSLRD----GKRSFIIV-THYQRILDYIKPDYV-HVLYQGRIVKSGDF 230 (248)
T ss_pred EEEe---CCCccCCHHHHHHHHHHHHHHHh----CCCEEEEE-eCCHHHHHhhhCCEE-EEEECCeEEEeCCH
Confidence 9999 99999999887655544332211 11122122 4999888877 7888 78888988766543
No 303
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.42 E-value=1e-13 Score=128.97 Aligned_cols=174 Identities=16% Similarity=0.161 Sum_probs=104.8
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-------HHh--hccCCCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-------LCQ--LFKPKSA 85 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-------l~~--~~~~~~~ 85 (350)
.+++.++++|++++|+|+||||||||+++|+|..... ...|.+|.|.++|.++.. +.. .|.++..
T Consensus 42 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~------~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~ 115 (272)
T PRK14236 42 FDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLV------DNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRP 115 (272)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCc------cCCCCceEEEECCEECcccccCHHHHhccEEEEecCC
Confidence 6778899999999999999999999999999983100 001479999998876431 111 1222221
Q ss_pred -CCcceeeeeeccccccccc--Cccc-cchHHHHHHHH---------------------HHHHHHHhhc-CCCceeeecC
Q 018809 86 -VPAFLEIHDIAGLVRGAHE--GQGL-GNSFLSHIRAV---------------------DGIFHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 86 -~~~~l~~~D~~g~~~~~~~--~~~~-~~~~l~~l~~~---------------------d~~l~vv~a~-~~~~vl~ld~ 139 (350)
... .++.|+..+...... .... ..+....++.. ..-+.+++++ .+|+++++|
T Consensus 116 ~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD- 193 (272)
T PRK14236 116 NPFP-KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLD- 193 (272)
T ss_pred ccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEe-
Confidence 111 244444322110000 0000 00011111110 0115677777 899999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+.+ ...+... +|+...+..+|+++ ..|.+|++...++
T Consensus 194 --EPt~gLD~~~~~~l~~~L~~~~~-----~~tiiiv-tH~~~~~~~~~d~i-~~l~~G~i~~~g~ 250 (272)
T PRK14236 194 --EPTSALDPISTLKIEELITELKS-----KYTIVIV-THNMQQAARVSDYT-AFMYMGKLVEYGD 250 (272)
T ss_pred --CCcccCCHHHHHHHHHHHHHHHh-----CCeEEEE-eCCHHHHHhhCCEE-EEEECCEEEecCC
Confidence 99999999887665555433311 1122122 49999999999999 8889998876554
No 304
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.42 E-value=5.9e-14 Score=129.59 Aligned_cols=170 Identities=14% Similarity=0.163 Sum_probs=101.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~~ 85 (350)
.-.+++..+++|+++||+|+||||||||+++|+|. .+|.+|.|.++|.++... .. .|.++..
T Consensus 36 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~ 104 (257)
T cd03288 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM-----------VDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDP 104 (257)
T ss_pred ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc-----------cCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCC
Confidence 44678889999999999999999999999999999 589999999998765321 11 1222221
Q ss_pred CCcceeeeeeccccccccc-C-------ccccchHHHHH---------------H-HHHHHHHHHhhc-CCCceeeecCC
Q 018809 86 VPAFLEIHDIAGLVRGAHE-G-------QGLGNSFLSHI---------------R-AVDGIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~-~-------~~~~~~~l~~l---------------~-~~d~~l~vv~a~-~~~~vl~ld~~ 140 (350)
.....++.+.......... . .++ ..++..+ . ....-+.+++++ .+|+++++|
T Consensus 105 ~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD-- 181 (257)
T cd03288 105 ILFSGSIRFNLDPECKCTDDRLWEALEIAQL-KNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMD-- 181 (257)
T ss_pred cccccHHHHhcCcCCCCCHHHHHHHHHHhCc-HHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 1111122222211100000 0 000 0000000 0 001114567777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||+.++|....+.+...+..+ .. ...+... +|+...+.. |+++ ..|.+|+++..++
T Consensus 182 -EPt~gLD~~~~~~l~~~l~~~----~~-~~tiii~-sh~~~~~~~-~dri-~~l~~G~i~~~g~ 237 (257)
T cd03288 182 -EATASIDMATENILQKVVMTA----FA-DRTVVTI-AHRVSTILD-ADLV-LVLSRGILVECDT 237 (257)
T ss_pred -CCccCCCHHHHHHHHHHHHHh----cC-CCEEEEE-ecChHHHHh-CCEE-EEEECCEEEEeCC
Confidence 999999998865554443221 11 1112122 488888775 9999 8889998876544
No 305
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.42 E-value=4.6e-14 Score=144.41 Aligned_cols=168 Identities=18% Similarity=0.223 Sum_probs=112.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-------hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-------~~~~~~~ 85 (350)
.=.+++..+++|+++||+||+||||||++|.|.+. .+|+.|.|.++|.++..+.. .+.+|..
T Consensus 344 vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~-----------~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~ 412 (567)
T COG1132 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL-----------YDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDP 412 (567)
T ss_pred cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCeEEECCEehhhcCHHHHHHhccEEcccc
Confidence 34678889999999999999999999999999999 68999999999877654322 1333333
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHH---HH-------------------------HHHHHhhc-CCCceee
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV---DG-------------------------IFHVLRAF-EDPDIIH 136 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~---d~-------------------------~l~vv~a~-~~~~vl~ 136 (350)
.-..-++.|+..++...... .+..+.++.+ |. .+.++||+ .+|++++
T Consensus 413 ~LF~~TI~~NI~~g~~~at~----eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILI 488 (567)
T COG1132 413 LLFSGTIRENIALGRPDATD----EEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILI 488 (567)
T ss_pred eeecccHHHHHhcCCCCCCH----HHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 22234555555554321100 1111111111 11 15577777 8999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
+| ||++.+|..++..+...+..+.+. ++... -+|.+..+.. +|+| ..|++|+++..|+-
T Consensus 489 LD---EaTSalD~~tE~~I~~~l~~l~~~-----rT~ii-IaHRlsti~~-aD~I-iVl~~G~i~e~G~h 547 (567)
T COG1132 489 LD---EATSALDTETEALIQDALKKLLKG-----RTTLI-IAHRLSTIKN-ADRI-IVLDNGRIVERGTH 547 (567)
T ss_pred Ee---ccccccCHHhHHHHHHHHHHHhcC-----CEEEE-EeccHhHHHh-CCEE-EEEECCEEEEecCH
Confidence 99 999999999986666654422211 11111 2488877777 9999 99999997766653
No 306
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.42 E-value=1e-13 Score=127.46 Aligned_cols=173 Identities=16% Similarity=0.205 Sum_probs=104.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC---cceEEEeCCcchhH-------HHh--hc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP---NEARVNIPDERFEW-------LCQ--LF 80 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p---~~G~i~~~~~~l~~-------l~~--~~ 80 (350)
.=.++++++.+|++++|+|+||||||||+++|+|... ..| .+|.|.++|.++.. ... .|
T Consensus 20 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---------~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 90 (252)
T PRK14255 20 ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMND---------LIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGM 90 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---------cCCCCCcccEEEEcCEEcccccccHHHhcCeEEE
Confidence 3467889999999999999999999999999999731 013 58999998875521 111 12
Q ss_pred cCCCCCCcceeeeeeccccccccc--Ccc-ccchHHHHHHHHH---------------------HHHHHHhhc-CCCcee
Q 018809 81 KPKSAVPAFLEIHDIAGLVRGAHE--GQG-LGNSFLSHIRAVD---------------------GIFHVLRAF-EDPDII 135 (350)
Q Consensus 81 ~~~~~~~~~l~~~D~~g~~~~~~~--~~~-~~~~~l~~l~~~d---------------------~~l~vv~a~-~~~~vl 135 (350)
.++.......++.++..+...... ... ........++.++ .-+.+++++ .+|+++
T Consensus 91 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll 170 (252)
T PRK14255 91 VFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVI 170 (252)
T ss_pred EECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 222211111244443322110000 000 0001111111110 015577777 899999
Q ss_pred eecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 136 ~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
++| ||++++|......+...+..+.+ ...+... +|+...+...|+++ .+|++|+++..+
T Consensus 171 llD---EPt~~LD~~~~~~l~~~l~~~~~-----~~tii~v-sH~~~~~~~~~d~i-~~l~~G~i~~~~ 229 (252)
T PRK14255 171 LLD---EPTSALDPISSTQIENMLLELRD-----QYTIILV-THSMHQASRISDKT-AFFLTGNLIEFA 229 (252)
T ss_pred EEc---CCCccCCHHHHHHHHHHHHHHHh-----CCEEEEE-ECCHHHHHHhCCEE-EEEECCEEEEeC
Confidence 999 99999999987666555443311 1122122 49999999999999 888999876543
No 307
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.3e-13 Score=134.56 Aligned_cols=166 Identities=19% Similarity=0.218 Sum_probs=104.5
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-------hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-------~~~~~~~ 85 (350)
.-.+++..+++|++++|+|++|||||||++.|+|. .+|++|.|..+|.++..+.. .+.+|+.
T Consensus 353 ~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~-----------~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~ 421 (573)
T COG4987 353 ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGA-----------WDPQQGSITLNGVEIASLDEQALRETISVLTQRV 421 (573)
T ss_pred hhhccceeecCCCeEEEECCCCCCHHHHHHHHHhc-----------cCCCCCeeeECCcChhhCChhhHHHHHhhhccch
Confidence 44788899999999999999999999999999999 69999999999976543322 1122221
Q ss_pred CCcceeeeeeccccccccc-------------------------------CccccchHHHHHHHHHHHHHHHhhcCCCce
Q 018809 86 VPAFLEIHDIAGLVRGAHE-------------------------------GQGLGNSFLSHIRAVDGIFHVLRAFEDPDI 134 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~-------------------------------~~~~~~~~l~~l~~~d~~l~vv~a~~~~~v 134 (350)
--+.-++.|+.-+...... |..+..--.+++..+.+++ +|..+
T Consensus 422 hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL------~dapl 495 (573)
T COG4987 422 HLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALL------HDAPL 495 (573)
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHH------cCCCe
Confidence 1111223333222211110 1111111124444444444 48899
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 135 l~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
++|| ||+.++|..++..++..+. .+.+ .+++.. .+|.+..+ +-||+| .+|++|+++..|+.
T Consensus 496 ~lLD---EPTegLD~~TE~~vL~ll~---~~~~--~kTll~-vTHrL~~l-e~~drI-ivl~~Gkiie~G~~ 556 (573)
T COG4987 496 WLLD---EPTEGLDPITERQVLALLF---EHAE--GKTLLM-VTHRLRGL-ERMDRI-IVLDNGKIIEEGTH 556 (573)
T ss_pred EEec---CCcccCChhhHHHHHHHHH---HHhc--CCeEEE-EecccccH-hhcCEE-EEEECCeeeecCCH
Confidence 9999 9999999999865555432 2221 111111 14887764 678999 89999999877653
No 308
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.42 E-value=7.1e-14 Score=143.77 Aligned_cols=165 Identities=17% Similarity=0.185 Sum_probs=105.5
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~ 85 (350)
--++++.++++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+. . .|.+|..
T Consensus 356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl-----------~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~ 424 (592)
T PRK10790 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGY-----------YPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDP 424 (592)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCceEEECCEEhhhCCHHHHHhheEEEccCC
Confidence 34677899999999999999999999999999999 6899999999998765421 1 2334432
Q ss_pred CCcceeeeeeccccccccc------------------------------CccccchHHHHHHHHHHHHHHHhhc-CCCce
Q 018809 86 VPAFLEIHDIAGLVRGAHE------------------------------GQGLGNSFLSHIRAVDGIFHVLRAF-EDPDI 134 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~------------------------------~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~v 134 (350)
.-..-++.|+..+...... +..+..--.++ +.++||+ .+|++
T Consensus 425 ~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQR-------ialARaLl~~~~i 497 (592)
T PRK10790 425 VVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQL-------LALARVLVQTPQI 497 (592)
T ss_pred ccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHH-------HHHHHHHHhCCCE
Confidence 2222344444443321100 00000000122 4567776 79999
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 135 l~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
+++| ||++.+|..++..+...+..+.+ .+++ .-.+|....+ ..+|+| ..|++|+++..|+.
T Consensus 498 lllD---Epts~LD~~t~~~i~~~l~~~~~-----~~tv-IivtHr~~~l-~~~D~i-i~l~~G~i~~~G~~ 558 (592)
T PRK10790 498 LILD---EATANIDSGTEQAIQQALAAVRE-----HTTL-VVIAHRLSTI-VEADTI-LVLHRGQAVEQGTH 558 (592)
T ss_pred EEEe---CCcccCCHHHHHHHHHHHHHHhC-----CCEE-EEEecchHHH-HhCCEE-EEEECCEEEEEcCH
Confidence 9999 99999999887555444322110 1111 1124888654 458998 78899988766553
No 309
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.41 E-value=8.1e-14 Score=146.20 Aligned_cols=166 Identities=16% Similarity=0.208 Sum_probs=107.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-------hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-------~~~~~~~ 85 (350)
-=.+++.++++|++++|+|++|||||||+++|+|. .+|++|.|.++|.++..+.. .|.+|..
T Consensus 489 iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl-----------~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~ 557 (708)
T TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF-----------FQARSGEILLNGFSLKDIDRHTLRQFINYLPQEP 557 (708)
T ss_pred ceeceeEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCcEEEECCEEHHHcCHHHHHHheEEEecCc
Confidence 34678899999999999999999999999999999 68999999999987654321 2344443
Q ss_pred CCcceeeeeeccccc-ccccCccccchHHHHHHHHH----------------------------HHHHHHhhc-CCCcee
Q 018809 86 VPAFLEIHDIAGLVR-GAHEGQGLGNSFLSHIRAVD----------------------------GIFHVLRAF-EDPDII 135 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~-~~~~~~~~~~~~l~~l~~~d----------------------------~~l~vv~a~-~~~~vl 135 (350)
.-..-++.|+..+.. ..... .++.+.++.+. --+.++||+ .+|+++
T Consensus 558 ~lf~gTI~eNi~l~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~il 633 (708)
T TIGR01193 558 YIFSGSILENLLLGAKENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVL 633 (708)
T ss_pred eehhHHHHHHHhccCCCCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEE
Confidence 222334445444431 10000 00111111110 015577777 799999
Q ss_pred eecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 136 ~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
++| ||++.+|..+++.+...+.. +. .+++ .-.+|....+ ..+|+| ..|++|+++..|+
T Consensus 634 iLD---E~Ts~LD~~te~~i~~~L~~----~~--~~T~-IiitHr~~~~-~~~D~i-~~l~~G~i~~~G~ 691 (708)
T TIGR01193 634 ILD---ESTSNLDTITEKKIVNNLLN----LQ--DKTI-IFVAHRLSVA-KQSDKI-IVLDHGKIIEQGS 691 (708)
T ss_pred EEe---CccccCCHHHHHHHHHHHHH----hc--CCEE-EEEecchHHH-HcCCEE-EEEECCEEEEECC
Confidence 999 99999999887655544321 10 1111 1124888654 668999 8889999876665
No 310
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.41 E-value=7.4e-14 Score=146.14 Aligned_cols=166 Identities=20% Similarity=0.240 Sum_probs=107.4
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~~ 86 (350)
-++++.++++|++++|+|+||||||||+++|+|. .+|++|.|.++|.++..+. . .|.+|...
T Consensus 473 l~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~-----------~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~ 541 (694)
T TIGR01846 473 LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRL-----------YTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENV 541 (694)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEehhhCCHHHHHHhCeEEccCCe
Confidence 4678899999999999999999999999999999 5899999999998765432 1 23444332
Q ss_pred CcceeeeeecccccccccCccccchHHHHHHHH---H-------------------------HHHHHHhhc-CCCceeee
Q 018809 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV---D-------------------------GIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~---d-------------------------~~l~vv~a~-~~~~vl~l 137 (350)
....++.|+..+....... .++.+.++.+ + --+.++|++ .+|+++++
T Consensus 542 lf~~ti~eNi~~~~~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ilil 617 (694)
T TIGR01846 542 LFSRSIRDNIALCNPGAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIF 617 (694)
T ss_pred ehhhhHHHHHhcCCCCCCH----HHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 2233444444432211000 0000101100 0 014567777 79999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++.+|..++..+...+..+.+ .+++ .-.+|....+. .+|++ ..|++|+++..|+
T Consensus 618 D---Epts~LD~~~~~~i~~~l~~~~~-----~~t~-i~itH~~~~~~-~~d~i-i~l~~G~i~~~g~ 674 (694)
T TIGR01846 618 D---EATSALDYESEALIMRNMREICR-----GRTV-IIIAHRLSTVR-ACDRI-IVLEKGQIAESGR 674 (694)
T ss_pred E---CCCcCCCHHHHHHHHHHHHHHhC-----CCEE-EEEeCChHHHH-hCCEE-EEEeCCEEEEeCC
Confidence 9 99999999997666555432210 1111 11248887764 59998 8889999876664
No 311
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=4.3e-14 Score=146.20 Aligned_cols=167 Identities=15% Similarity=0.174 Sum_probs=101.8
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCC-cchhHHHhhccCCCCCCcceeee
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD-ERFEWLCQLFKPKSAVPAFLEIH 93 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~-~~l~~l~~~~~~~~~~~~~l~~~ 93 (350)
.+++..|.+|+++||+||||||||||+++|+|. .+|++|.|.+.+ ..+.++.+... .......++.
T Consensus 329 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~-----------~~p~~G~i~~~~~~~igy~~Q~~~--~~l~~~~~~~ 395 (638)
T PRK10636 329 DSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE-----------LAPVSGEIGLAKGIKLGYFAQHQL--EFLRADESPL 395 (638)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEEECCCEEEEEecCcch--hhCCccchHH
Confidence 567889999999999999999999999999999 689999998863 22222221000 0001111112
Q ss_pred eecccccccccCccccchHHHHHHH---------------HHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHH
Q 018809 94 DIAGLVRGAHEGQGLGNSFLSHIRA---------------VDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLK 157 (350)
Q Consensus 94 D~~g~~~~~~~~~~~~~~~l~~l~~---------------~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~ 157 (350)
+....... .........++..+.. -..-+.+++++ .+|++++|| ||++++|+...+.+..
T Consensus 396 ~~~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLD---EPt~~LD~~~~~~l~~ 471 (638)
T PRK10636 396 QHLARLAP-QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLD---EPTNHLDLDMRQALTE 471 (638)
T ss_pred HHHHHhCc-hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHHHHH
Confidence 11100000 0000000111111110 00115566776 799999999 9999999999766655
Q ss_pred HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc-ccCCCC
Q 018809 158 DIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDWK 207 (350)
Q Consensus 158 ~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~-~~~~~t 207 (350)
.+..+ ...+... +|+...+..+|+++ .+|.+|++. +.|+++
T Consensus 472 ~L~~~-------~gtvi~v-SHd~~~~~~~~d~i-~~l~~G~i~~~~g~~~ 513 (638)
T PRK10636 472 ALIDF-------EGALVVV-SHDRHLLRSTTDDL-YLVHDGKVEPFDGDLE 513 (638)
T ss_pred HHHHc-------CCeEEEE-eCCHHHHHHhCCEE-EEEECCEEEEcCCCHH
Confidence 54322 1222222 49999999999999 888999886 566655
No 312
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.41 E-value=1.1e-13 Score=141.74 Aligned_cols=170 Identities=18% Similarity=0.248 Sum_probs=105.3
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~~ 86 (350)
-.+++..+++|++++|+|+||+|||||+++|+|. .+|.+|.|.++|.++..+. . .|.+|...
T Consensus 348 l~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl-----------~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~ 416 (571)
T TIGR02203 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRF-----------YEPDSGQILLDGHDLADYTLASLRRQVALVSQDVV 416 (571)
T ss_pred ccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcc
Confidence 3677889999999999999999999999999999 6899999999997765432 1 24444433
Q ss_pred Ccceeeeeecccccc-cccCcccc--------chHHHHH---------------HH-HHHHHHHHhhc-CCCceeeecCC
Q 018809 87 PAFLEIHDIAGLVRG-AHEGQGLG--------NSFLSHI---------------RA-VDGIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~-~~~~~~~~--------~~~l~~l---------------~~-~d~~l~vv~a~-~~~~vl~ld~~ 140 (350)
-..-++.|+..+... ......+. ..+...+ .. ----+.++|++ .+|+++++|
T Consensus 417 lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLD-- 494 (571)
T TIGR02203 417 LFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILD-- 494 (571)
T ss_pred cccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 333445554443321 00000000 0000000 00 00015677777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|..+++.+...+..+.+ .+++ .-.+|+... ...||++ ..|++|++...++
T Consensus 495 -Epts~LD~~~~~~i~~~L~~~~~-----~~ti-IiitH~~~~-~~~~D~i-i~l~~g~i~~~g~ 550 (571)
T TIGR02203 495 -EATSALDNESERLVQAALERLMQ-----GRTT-LVIAHRLST-IEKADRI-VVMDDGRIVERGT 550 (571)
T ss_pred -CccccCCHHHHHHHHHHHHHHhC-----CCEE-EEEehhhHH-HHhCCEE-EEEeCCEEEeeCC
Confidence 99999999997655544322110 1111 112487744 5668988 7788887765443
No 313
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.41 E-value=8.3e-14 Score=141.39 Aligned_cols=174 Identities=16% Similarity=0.206 Sum_probs=106.5
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-----cceEEEeCCcchhHH--------H-
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDERFEWL--------C- 77 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p-----~~G~i~~~~~~l~~l--------~- 77 (350)
+.-.+++.++..|+++||+|+||||||||+++|+|.. +| .+|.|.++|.++... .
T Consensus 23 ~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~-----------~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 91 (529)
T PRK15134 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL-----------PSPPVVYPSGDIRFHGESLLHASEQTLRGVRG 91 (529)
T ss_pred eeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCC-----------CCCcCCccceEEEECCEecccCCHHHHHHHhc
Confidence 3457889999999999999999999999999999993 43 789999998764221 0
Q ss_pred -h-hccCCCC---CCcceeeeeecccc----cccccC--ccccchHHHHHHHH------H-----------HHHHHHhhc
Q 018809 78 -Q-LFKPKSA---VPAFLEIHDIAGLV----RGAHEG--QGLGNSFLSHIRAV------D-----------GIFHVLRAF 129 (350)
Q Consensus 78 -~-~~~~~~~---~~~~l~~~D~~g~~----~~~~~~--~~~~~~~l~~l~~~------d-----------~~l~vv~a~ 129 (350)
. .|.+|.. .....++.+...+. .+.... .......++.+... + --+.+++++
T Consensus 92 ~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL 171 (529)
T PRK15134 92 NKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMAL 171 (529)
T ss_pred CceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHH
Confidence 0 1222221 11112222221110 000000 00001111111110 0 115677777
Q ss_pred -CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 130 -EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 130 -~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
.+|+++++| ||++.+|......+...+..+.+. ....+... +|+...+..+||++ .+|++|+++..+
T Consensus 172 ~~~p~llllD---EPt~~LD~~~~~~l~~~l~~l~~~---~g~tvi~v-tHd~~~~~~~~dri-~~l~~G~i~~~g 239 (529)
T PRK15134 172 LTRPELLIAD---EPTTALDVSVQAQILQLLRELQQE---LNMGLLFI-THNLSIVRKLADRV-AVMQNGRCVEQN 239 (529)
T ss_pred hcCCCEEEEc---CCCCccCHHHHHHHHHHHHHHHHh---cCCeEEEE-cCcHHHHHHhcCEE-EEEECCEEEEeC
Confidence 899999999 999999999986666655443221 11122122 49999999999999 899999877554
No 314
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.41 E-value=6.5e-14 Score=130.40 Aligned_cols=170 Identities=16% Similarity=0.242 Sum_probs=102.5
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~ 85 (350)
.-.+++..|++|+++||+|+||+|||||+++|+|. .+ ..|.|.++|.++..+. . .|.++..
T Consensus 19 ~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl-----------~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~ 86 (275)
T cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-----------LN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKV 86 (275)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhh-----------cC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCc
Confidence 45788899999999999999999999999999999 34 6899999997654321 1 2223322
Q ss_pred CCcceeeeeeccccccccc--------CccccchHHHH---------------HH-HHHHHHHHHhhc-CCCceeeecCC
Q 018809 86 VPAFLEIHDIAGLVRGAHE--------GQGLGNSFLSH---------------IR-AVDGIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~--------~~~~~~~~l~~---------------l~-~~d~~l~vv~a~-~~~~vl~ld~~ 140 (350)
.....++.|+......... ..++. .+... +. ..-..+.+++++ .+|+++++|
T Consensus 87 ~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~-~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlD-- 163 (275)
T cd03289 87 FIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLK-SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD-- 163 (275)
T ss_pred ccchhhHHHHhhhccCCCHHHHHHHHHHcCCH-HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE--
Confidence 1111233333311000000 00000 00000 00 001125567777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
||++.+|......+...+..+ .. ...+ .-.+|+...+.. ||++ .+|++|+++..++.
T Consensus 164 -Epts~LD~~~~~~l~~~l~~~----~~-~~ti-i~isH~~~~i~~-~dri-~vl~~G~i~~~g~~ 220 (275)
T cd03289 164 -EPSAHLDPITYQVIRKTLKQA----FA-DCTV-ILSEHRIEAMLE-CQRF-LVIEENKVRQYDSI 220 (275)
T ss_pred -CccccCCHHHHHHHHHHHHHh----cC-CCEE-EEEECCHHHHHh-CCEE-EEecCCeEeecCCH
Confidence 999999998865554443321 00 1111 112499987764 9999 88999998876653
No 315
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.41 E-value=1e-13 Score=141.43 Aligned_cols=168 Identities=16% Similarity=0.202 Sum_probs=103.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCc-chhHHHhhccCCCCCCccee
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE-RFEWLCQLFKPKSAVPAFLE 91 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~-~l~~l~~~~~~~~~~~~~l~ 91 (350)
.-.+++..|.+|++++|+|+||||||||+++|+|. .+|.+|.|.+++. .+.++ ++. ......++
T Consensus 22 il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~-----------~~p~~G~i~~~~~~~i~~v---~Q~-~~~~~~~t 86 (556)
T PRK11819 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-----------DKEFEGEARPAPGIKVGYL---PQE-PQLDPEKT 86 (556)
T ss_pred eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecCCCEEEEE---ecC-CCCCCCCc
Confidence 34788999999999999999999999999999999 5789999987642 11111 111 11112234
Q ss_pred eeeeccccccc---------------ccCc-----------------------cccchHHHHHH----------------
Q 018809 92 IHDIAGLVRGA---------------HEGQ-----------------------GLGNSFLSHIR---------------- 117 (350)
Q Consensus 92 ~~D~~g~~~~~---------------~~~~-----------------------~~~~~~l~~l~---------------- 117 (350)
+.|+..+.... .... ....++...+.
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSg 166 (556)
T PRK11819 87 VRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSG 166 (556)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCH
Confidence 44443221000 0000 00000000000
Q ss_pred HHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhh
Q 018809 118 AVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ 196 (350)
Q Consensus 118 ~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~ 196 (350)
.-..-+.+++++ .+|+++++| ||++.+|....+.+...+.. +...+... +|+...+..+|+++ ..|+
T Consensus 167 Gqkqrv~la~al~~~p~vlLLD---EPt~~LD~~~~~~l~~~L~~-------~~~tviii-sHd~~~~~~~~d~i-~~l~ 234 (556)
T PRK11819 167 GERRRVALCRLLLEKPDMLLLD---EPTNHLDAESVAWLEQFLHD-------YPGTVVAV-THDRYFLDNVAGWI-LELD 234 (556)
T ss_pred HHHHHHHHHHHHhCCCCEEEEc---CCCCcCChHHHHHHHHHHHh-------CCCeEEEE-eCCHHHHHhhcCeE-EEEe
Confidence 001125567777 799999999 99999999887544443322 11222222 49999999999999 8899
Q ss_pred cCCcc-ccCCCC
Q 018809 197 DGKDV-RLGDWK 207 (350)
Q Consensus 197 ~g~~~-~~~~~t 207 (350)
+|+++ +.++++
T Consensus 235 ~g~i~~~~g~~~ 246 (556)
T PRK11819 235 RGRGIPWEGNYS 246 (556)
T ss_pred CCEEEEecCCHH
Confidence 99876 556554
No 316
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.41 E-value=8.4e-14 Score=128.33 Aligned_cols=167 Identities=16% Similarity=0.195 Sum_probs=93.2
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEE-----------eCCcchhHHHh-h--
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-----------IPDERFEWLCQ-L-- 79 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~-----------~~~~~l~~l~~-~-- 79 (350)
-..++ .+.+|++++|+|+||||||||+++|+|. .+|++|.|. +.|..+..... .
T Consensus 17 l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl-----------~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~ 84 (255)
T cd03236 17 LHRLP-VPREGQVLGLVGPNGIGKSTALKILAGK-----------LKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLE 84 (255)
T ss_pred hhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCC-----------cCCCCceEeeccccchhhhhccCchhhhhhHHhhh
Confidence 35566 4899999999999999999999999999 689999996 55655432210 0
Q ss_pred ------ccCCCCCCcceeeeeecccccccccCccccchHHHHHH--------------HHHHHHHHHhhc-CCCceeeec
Q 018809 80 ------FKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIR--------------AVDGIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 80 ------~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~--------------~~d~~l~vv~a~-~~~~vl~ld 138 (350)
+.++........+.++....-...........+++.+. .....+.+++++ .+|+++++|
T Consensus 85 ~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD 164 (255)
T cd03236 85 GDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFD 164 (255)
T ss_pred cccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 00110000000111111000000000000000010000 001125566776 799999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccc
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~ 202 (350)
||++.+|......+.+.+..+.+ ....+... +|+...+..+|+++ ..|. |++..
T Consensus 165 ---EPts~LD~~~~~~l~~~l~~l~~----~~~tIIii-SHd~~~~~~~ad~i-~~l~-~~~~~ 218 (255)
T cd03236 165 ---EPSSYLDIKQRLNAARLIRELAE----DDNYVLVV-EHDLAVLDYLSDYI-HCLY-GEPGA 218 (255)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHHHh----cCCEEEEE-ECCHHHHHHhCCEE-EEEC-CCCCc
Confidence 99999999987666555443321 11122122 49999998999998 6664 55543
No 317
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.41 E-value=9.5e-14 Score=143.68 Aligned_cols=172 Identities=16% Similarity=0.237 Sum_probs=98.7
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcc-hhHHHh------------hc
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-FEWLCQ------------LF 80 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~-l~~l~~------------~~ 80 (350)
-.+++++|.+|+++||+|+||||||||+++|+|. ..|++|.|.+++.. +.++.+ ++
T Consensus 17 l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~-----------~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~ 85 (638)
T PRK10636 17 LDNATATINPGQKVGLVGKNGCGKSTLLALLKNE-----------ISADGGSYTFPGNWQLAWVNQETPALPQPALEYVI 85 (638)
T ss_pred ecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHH
Confidence 3688999999999999999999999999999998 57899999887642 111110 00
Q ss_pred cCCCCCC---cceeee---ee----ccccc-----ccccCccccchHHHHHHH---------------HHHHHHHHhhc-
Q 018809 81 KPKSAVP---AFLEIH---DI----AGLVR-----GAHEGQGLGNSFLSHIRA---------------VDGIFHVLRAF- 129 (350)
Q Consensus 81 ~~~~~~~---~~l~~~---D~----~g~~~-----~~~~~~~~~~~~l~~l~~---------------~d~~l~vv~a~- 129 (350)
+...... ..+... +. ..+.. ..+........++..+.. -..-+.+++++
T Consensus 86 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~ 165 (638)
T PRK10636 86 DGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALI 165 (638)
T ss_pred HhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHc
Confidence 0000000 000000 00 00000 000000000011111111 00114566666
Q ss_pred CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc-ccCCCCh
Q 018809 130 EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDWKA 208 (350)
Q Consensus 130 ~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~-~~~~~t~ 208 (350)
.+|++++|| ||++++|+...+.+ .+.+.++...+... +|+...+..+|+++ ..|.+|++. +.++++.
T Consensus 166 ~~P~lLLLD---EPtn~LD~~~~~~L-------~~~L~~~~~tviiv-sHd~~~l~~~~d~i-~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 166 CRSDLLLLD---EPTNHLDLDAVIWL-------EKWLKSYQGTLILI-SHDRDFLDPIVDKI-IHIEQQSLFEYTGNYSS 233 (638)
T ss_pred cCCCEEEEc---CCCCcCCHHHHHHH-------HHHHHhCCCeEEEE-eCCHHHHHHhcCEE-EEEeCCEEEEecCCHHH
Confidence 799999999 99999999885432 22232222222122 49999999999999 889999885 4566553
No 318
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.41 E-value=1.1e-12 Score=110.51 Aligned_cols=134 Identities=16% Similarity=0.119 Sum_probs=87.2
Q ss_pred ccCcCCCCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH---------
Q 018809 6 SKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------- 76 (350)
Q Consensus 6 ~~~~~~~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------- 76 (350)
+.++.++--++++..+++|+.++|.||+|||||||+++++.+ +.|++|.+++.|+.+..+
T Consensus 11 y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L-----------isp~~G~l~f~Ge~vs~~~pea~Rq~V 79 (223)
T COG4619 11 YLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL-----------ISPTSGTLLFEGEDVSTLKPEAYRQQV 79 (223)
T ss_pred hhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhc-----------cCCCCceEEEcCccccccChHHHHHHH
Confidence 455666777999999999999999999999999999999999 799999999999875321
Q ss_pred HhhccCCCCCCcceeeeeecccccccccCccccchHHHHHHHHH------------------HHHHHHhhc-CCCceeee
Q 018809 77 CQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD------------------GIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 77 ~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d------------------~~l~vv~a~-~~~~vl~l 137 (350)
+.+.+....++ -++.|+.-+.-..+..+.-...+++.+..++ -.+.++|.+ --|+++.|
T Consensus 80 sY~~Q~paLfg--~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLL 157 (223)
T COG4619 80 SYCAQTPALFG--DTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLL 157 (223)
T ss_pred HHHHcCccccc--cchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEe
Confidence 11222222222 3455655443221111100111122221111 114566666 67999999
Q ss_pred cCCCCCCchhHHHHHHHH
Q 018809 138 DDSVDPVRDLEVISAELR 155 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~ 155 (350)
| ||++.+|.-+++-+
T Consensus 158 D---E~TsALD~~nkr~i 172 (223)
T COG4619 158 D---EITSALDESNKRNI 172 (223)
T ss_pred c---CchhhcChhhHHHH
Confidence 9 99999999886443
No 319
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.41 E-value=4.3e-14 Score=148.13 Aligned_cols=164 Identities=15% Similarity=0.186 Sum_probs=104.4
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~~ 86 (350)
=.+++.++++|++++|+|+||||||||+++|+|. .+|++|.|.++|.++..+. . .|.+|...
T Consensus 497 L~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-----------~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~ 565 (711)
T TIGR00958 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNL-----------YQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPV 565 (711)
T ss_pred ccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCCEEEECCEEHHhcCHHHHHhhceEEecCcc
Confidence 4678899999999999999999999999999999 6899999999998765432 1 23444433
Q ss_pred CcceeeeeecccccccccCccccchHHHHHHHH----------------------------HHHHHHHhhc-CCCceeee
Q 018809 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~----------------------------d~~l~vv~a~-~~~~vl~l 137 (350)
-..-++.|+..+.......+ +..+.++.+ .--+.++|++ .+|+++++
T Consensus 566 lF~gTIreNI~~g~~~~~~e----~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILIL 641 (711)
T TIGR00958 566 LFSGSVRENIAYGLTDTPDE----EIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLIL 641 (711)
T ss_pred ccccCHHHHHhcCCCCCCHH----HHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 33345555544432111000 000000000 0014567777 79999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++.+|...+..+.. . .. . -.+++ .-.+|....+ ..+|+| ..|++|+++..|+
T Consensus 642 D---EpTSaLD~~te~~i~~-~---~~-~--~~~Tv-IiItHrl~~i-~~aD~I-ivL~~G~ive~Gt 696 (711)
T TIGR00958 642 D---EATSALDAECEQLLQE-S---RS-R--ASRTV-LLIAHRLSTV-ERADQI-LVLKKGSVVEMGT 696 (711)
T ss_pred E---ccccccCHHHHHHHHH-h---hc-c--CCCeE-EEEeccHHHH-HhCCEE-EEEECCEEEEeeC
Confidence 9 9999999977543332 0 00 0 01111 1124888765 558998 8889998876664
No 320
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.40 E-value=4.6e-13 Score=135.95 Aligned_cols=129 Identities=22% Similarity=0.256 Sum_probs=85.5
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh------hccCCCCCCc
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ------LFKPKSAVPA 88 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~------~~~~~~~~~~ 88 (350)
.+++.++++|++++|+|++|||||||+|+|+|. .+|++|.|.++|.++..+.. .|.+|...-.
T Consensus 352 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~-----------~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF 420 (529)
T TIGR02868 352 DGVSLDLPPGERVAILGPSGSGKSTLLMLLTGL-----------LDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLF 420 (529)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccc
Confidence 677889999999999999999999999999999 68999999999987765411 2444443333
Q ss_pred ceeeeeecccccccccCccccchHHHHHHHHH-------------------------HHHHHHhhc-CCCceeeecCCCC
Q 018809 89 FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD-------------------------GIFHVLRAF-EDPDIIHVDDSVD 142 (350)
Q Consensus 89 ~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d-------------------------~~l~vv~a~-~~~~vl~ld~~~e 142 (350)
.-++.|+..++......+.+ .+.++.....| --+.++||+ .+|+++++| |
T Consensus 421 ~~TI~eNI~~g~~~~~~e~i-~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLD---E 496 (529)
T TIGR02868 421 DTTVRDNLRLGRPDATDEEL-WAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLD---E 496 (529)
T ss_pred cccHHHHHhccCCCCCHHHH-HHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEe---C
Confidence 34555555443221110000 00000000000 015677887 899999999 9
Q ss_pred CCchhHHHHHHHHHHH
Q 018809 143 PVRDLEVISAELRLKD 158 (350)
Q Consensus 143 P~~~ld~~~~el~~~~ 158 (350)
|++.+|..++..+...
T Consensus 497 ~TSaLD~~te~~I~~~ 512 (529)
T TIGR02868 497 PTEHLDAGTESELLED 512 (529)
T ss_pred CcccCCHHHHHHHHHH
Confidence 9999999887555444
No 321
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.40 E-value=7.9e-14 Score=156.76 Aligned_cols=171 Identities=16% Similarity=0.176 Sum_probs=111.8
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH----HHh--hccCCC-CC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LCQ--LFKPKS-AV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~----l~~--~~~~~~-~~ 86 (350)
-++++.++.+|++++|+|+||||||||+++|+|. .+|++|.|.++|.++.. ... .+.++. ..
T Consensus 946 L~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGL-----------l~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L 1014 (2272)
T TIGR01257 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGL-----------LPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNIL 1014 (2272)
T ss_pred EEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcC-----------CCCCceEEEECCEECcchHHHHhhcEEEEecCCcC
Confidence 3678889999999999999999999999999999 68999999999976532 111 122332 22
Q ss_pred Ccceeeeeeccccccccc-C-c---cccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCch
Q 018809 87 PAFLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRD 146 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~-~-~---~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~~ 146 (350)
...+++.|...+...... . . .....+++.+...+. -+.+++|+ .+|+++++| ||+++
T Consensus 1015 ~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLD---EPTSG 1091 (2272)
T TIGR01257 1015 FHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLD---EPTSG 1091 (2272)
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCCcC
Confidence 334555555443211100 0 0 000111111111111 15677787 899999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 147 ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+|......+...+..+. + ...+... +|++++++.++|++ .+|.+|++...|+
T Consensus 1092 LDp~sr~~l~~lL~~l~----~-g~TIIlt-THdmdea~~laDrI-~iL~~GkL~~~Gs 1143 (2272)
T TIGR01257 1092 VDPYSRRSIWDLLLKYR----S-GRTIIMS-THHMDEADLLGDRI-AIISQGRLYCSGT 1143 (2272)
T ss_pred CCHHHHHHHHHHHHHHh----C-CCEEEEE-ECCHHHHHHhCCEE-EEEECCEEEEecC
Confidence 99999766666544331 1 1222122 49999999999999 8999998776553
No 322
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.40 E-value=5.6e-14 Score=142.70 Aligned_cols=168 Identities=17% Similarity=0.237 Sum_probs=100.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcc-hhHHHhhccCCCCCCccee
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-FEWLCQLFKPKSAVPAFLE 91 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~-l~~l~~~~~~~~~~~~~l~ 91 (350)
.-..++.++.+|+++||+|+||||||||+++|+|. .+|++|.|.+++.. +.++. +. ...+..++
T Consensus 16 il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~~~~i~~~~---q~-~~~~~~~t 80 (530)
T PRK15064 16 LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGD-----------LEPSAGNVSLDPNERLGKLR---QD-QFAFEEFT 80 (530)
T ss_pred eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecCCCEEEEEe---cc-CCcCCCCc
Confidence 44778999999999999999999999999999998 57899999887631 11111 10 01111122
Q ss_pred eeeecccccc---------------c----------------------ccCccccchHHHHHHH---------------H
Q 018809 92 IHDIAGLVRG---------------A----------------------HEGQGLGNSFLSHIRA---------------V 119 (350)
Q Consensus 92 ~~D~~g~~~~---------------~----------------------~~~~~~~~~~l~~l~~---------------~ 119 (350)
+.|...+... . .........+++.+.. -
T Consensus 81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq 160 (530)
T PRK15064 81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGW 160 (530)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHH
Confidence 2222111000 0 0000000000100000 0
Q ss_pred HHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcC
Q 018809 120 DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (350)
Q Consensus 120 d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g 198 (350)
..-+.+++++ .+|+++++| ||++.+|......+...+. .....+... +|+...+..+|+++ .+|++|
T Consensus 161 ~qrv~lA~aL~~~p~lLlLD---EPt~~LD~~~~~~l~~~l~-------~~~~tiiiv-sHd~~~~~~~~d~i-~~l~~g 228 (530)
T PRK15064 161 KLRVLLAQALFSNPDILLLD---EPTNNLDINTIRWLEDVLN-------ERNSTMIII-SHDRHFLNSVCTHM-ADLDYG 228 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEc---CCCcccCHHHHHHHHHHHH-------hCCCeEEEE-eCCHHHHHhhcceE-EEEeCC
Confidence 0114566666 799999999 9999999998754444321 111222222 49999999999999 899999
Q ss_pred Ccc-ccCCCC
Q 018809 199 KDV-RLGDWK 207 (350)
Q Consensus 199 ~~~-~~~~~t 207 (350)
+++ +.++++
T Consensus 229 ~i~~~~g~~~ 238 (530)
T PRK15064 229 ELRVYPGNYD 238 (530)
T ss_pred EEEEecCCHH
Confidence 884 555543
No 323
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.40 E-value=8.2e-14 Score=128.09 Aligned_cols=175 Identities=16% Similarity=0.100 Sum_probs=100.3
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h---hccCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q---LFKPKS 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~---~~~~~~ 84 (350)
.=.+++.++++|+++||+|+||||||||+++|+|... .+|+.|.|.++|..+.... . .+.++.
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~ 92 (252)
T CHL00131 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPA---------YKILEGDILFKGESILDLEPEERAHLGIFLAFQY 92 (252)
T ss_pred eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCc---------CcCCCceEEECCEEcccCChhhhheeeEEEEecc
Confidence 3467788999999999999999999999999999720 2588999999886543211 0 111111
Q ss_pred -CCCcceeeeeeccccccc-------ccCc--cc---cchHHHHHHH----------------HHHHHHHHhhc-CCCce
Q 018809 85 -AVPAFLEIHDIAGLVRGA-------HEGQ--GL---GNSFLSHIRA----------------VDGIFHVLRAF-EDPDI 134 (350)
Q Consensus 85 -~~~~~l~~~D~~g~~~~~-------~~~~--~~---~~~~l~~l~~----------------~d~~l~vv~a~-~~~~v 134 (350)
.....+++.+...+.... .... .. ....+..++. ...-+.+++++ .+|++
T Consensus 93 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 172 (252)
T CHL00131 93 PIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSEL 172 (252)
T ss_pred ccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCE
Confidence 000011111111100000 0000 00 0000110000 01114566666 79999
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHH-HHHHHHHhhcCCccccCC
Q 018809 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHEL-CQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 135 l~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l-~~~i~~~L~~g~~~~~~~ 205 (350)
+++| ||++++|....+.+...+..+.+ -...+... +|+...+..+ |+++ ..|++|+++..++
T Consensus 173 lllD---EPt~~LD~~~~~~l~~~l~~~~~----~g~tii~~-tH~~~~~~~~~~d~i-~~l~~G~i~~~~~ 235 (252)
T CHL00131 173 AILD---ETDSGLDIDALKIIAEGINKLMT----SENSIILI-THYQRLLDYIKPDYV-HVMQNGKIIKTGD 235 (252)
T ss_pred EEEc---CCcccCCHHHHHHHHHHHHHHHh----CCCEEEEE-ecCHHHHHhhhCCEE-EEEeCCEEEEecC
Confidence 9999 99999999987655554432211 01112122 4999888776 7888 7888998876654
No 324
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.40 E-value=3.9e-13 Score=121.42 Aligned_cols=160 Identities=14% Similarity=0.210 Sum_probs=93.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeC--Cc--chhH--------H-Hh-
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP--DE--RFEW--------L-CQ- 78 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~--~~--~l~~--------l-~~- 78 (350)
.-.++++++.+|++++|+|+||||||||+++|+|. .+|..|.|.++ |. ++.. + ..
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~ 91 (224)
T TIGR02324 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN-----------YLPDSGRILVRHEGAWVDLAQASPREVLEVRRKT 91 (224)
T ss_pred EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEEEecCCCccchhhcCHHHHHHHHhcc
Confidence 34678899999999999999999999999999999 58899999997 32 3211 0 10
Q ss_pred -hccCCC-CCCcceeeeeecccc---cccccC--ccccchHHHHHHHHH---------------HHHHHHhhc-CCCcee
Q 018809 79 -LFKPKS-AVPAFLEIHDIAGLV---RGAHEG--QGLGNSFLSHIRAVD---------------GIFHVLRAF-EDPDII 135 (350)
Q Consensus 79 -~~~~~~-~~~~~l~~~D~~g~~---~~~~~~--~~~~~~~l~~l~~~d---------------~~l~vv~a~-~~~~vl 135 (350)
.|.++. .....+++.|+..+. .+.... ......+++.+...+ .-+.+++++ .+|+++
T Consensus 92 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 171 (224)
T TIGR02324 92 IGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPIL 171 (224)
T ss_pred eEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 122222 112222333332211 000000 000011111111000 115577777 799999
Q ss_pred eecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 018809 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRV 191 (350)
Q Consensus 136 ~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i 191 (350)
++| ||++++|....+.+...+..+.+ ....+... +|+...+..+||++
T Consensus 172 llD---EPt~~LD~~~~~~l~~~l~~~~~----~g~tii~v-sH~~~~~~~~~d~i 219 (224)
T TIGR02324 172 LLD---EPTASLDAANRQVVVELIAEAKA----RGAALIGI-FHDEEVRELVADRV 219 (224)
T ss_pred EEc---CCcccCCHHHHHHHHHHHHHHHh----cCCEEEEE-eCCHHHHHHhccee
Confidence 999 99999999887665554433211 11122122 49988888888887
No 325
>PRK13409 putative ATPase RIL; Provisional
Probab=99.40 E-value=6.2e-14 Score=143.43 Aligned_cols=167 Identities=17% Similarity=0.231 Sum_probs=101.2
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCC-CCCcceeee
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-AVPAFLEIH 93 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~-~~~~~l~~~ 93 (350)
..+++.++.|+++||+|+||||||||+++|+|. .+|++|.|.++ ..+. |.++. .....+++.
T Consensus 356 ~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl-----------~~p~~G~I~~~-~~i~-----y~~Q~~~~~~~~tv~ 418 (590)
T PRK13409 356 EVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGV-----------LKPDEGEVDPE-LKIS-----YKPQYIKPDYDGTVE 418 (590)
T ss_pred EecceEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEEe-eeEE-----EecccccCCCCCcHH
Confidence 345677899999999999999999999999999 68999999875 2221 22221 112234444
Q ss_pred eecccccccccCccccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHH
Q 018809 94 DIAGLVRGAHEGQGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKD 158 (350)
Q Consensus 94 D~~g~~~~~~~~~~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~ 158 (350)
|+..+.............+++.+...+. -+.+++++ .+|+++++| ||++++|......+...
T Consensus 419 e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLD---EPt~~LD~~~~~~l~~~ 495 (590)
T PRK13409 419 DLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLD---EPSAHLDVEQRLAVAKA 495 (590)
T ss_pred HHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe---CCccCCCHHHHHHHHHH
Confidence 4433221110000011111222111111 15577777 799999999 99999999987666555
Q ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 159 IEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 159 l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
+..+.+. ....+... +|+...+..++|++ .+|. |++...+..+
T Consensus 496 l~~l~~~---~g~tviiv-sHD~~~~~~~aDrv-ivl~-~~~~~~g~~~ 538 (590)
T PRK13409 496 IRRIAEE---REATALVV-DHDIYMIDYISDRL-MVFE-GEPGKHGHAS 538 (590)
T ss_pred HHHHHHh---CCCEEEEE-eCCHHHHHHhCCEE-EEEc-CcceeeeecC
Confidence 4433221 11112122 49999999999998 6665 5665544443
No 326
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.40 E-value=1.4e-13 Score=123.80 Aligned_cols=163 Identities=15% Similarity=0.190 Sum_probs=94.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH---------h--hcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---------Q--LFK 81 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~---------~--~~~ 81 (350)
.-.+++..+++|++++|+|+||||||||+++|+|. .+|.+|.|.++|..+.... . .|.
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 84 (218)
T cd03290 16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGE-----------MQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYA 84 (218)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc-----------CCCCCCeEEECCcccccccccccchhhcceEEEE
Confidence 44678999999999999999999999999999999 5789999999886543210 1 122
Q ss_pred CCCCCCcceeeeeecccccccccCccccchHHHHHHH---H----------------------HHHHHHHhhc-CCCcee
Q 018809 82 PKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA---V----------------------DGIFHVLRAF-EDPDII 135 (350)
Q Consensus 82 ~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~---~----------------------d~~l~vv~a~-~~~~vl 135 (350)
++.......++.|+..+...... . ........+.. . ..-+.+++++ .+|+++
T Consensus 85 ~q~~~~~~~t~~~nl~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~il 162 (218)
T cd03290 85 AQKPWLLNATVEENITFGSPFNK-Q-RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIV 162 (218)
T ss_pred cCCCccccccHHHHHhhcCcCCH-H-HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 22211112334443332211000 0 00011111100 0 0115567777 899999
Q ss_pred eecCCCCCCchhHHHHHHHHHH--HHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcC
Q 018809 136 HVDDSVDPVRDLEVISAELRLK--DIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (350)
Q Consensus 136 ~ld~~~eP~~~ld~~~~el~~~--~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g 198 (350)
++| ||+.++|....+.+.. .+..+ ......+... +|+...+. .|+++ ..|.+|
T Consensus 163 llD---EPt~~LD~~~~~~l~~~~ll~~~----~~~~~tii~~-sH~~~~~~-~~d~i-~~l~~G 217 (218)
T cd03290 163 FLD---DPFSALDIHLSDHLMQEGILKFL----QDDKRTLVLV-THKLQYLP-HADWI-IAMKDG 217 (218)
T ss_pred EEe---CCccccCHHHHHHHHHHHHHHHH----hcCCCEEEEE-eCChHHHh-hCCEE-EEecCC
Confidence 999 9999999988654443 22211 1111122122 38887764 57766 455444
No 327
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.40 E-value=9.5e-14 Score=142.55 Aligned_cols=170 Identities=17% Similarity=0.204 Sum_probs=105.9
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~~ 86 (350)
=++++..+++|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++..+. . .+.+|...
T Consensus 351 l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 419 (585)
T TIGR01192 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV-----------YDPTVGQILIDGIDINTVTRESLRKSIATVFQDAG 419 (585)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHccC-----------CCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCc
Confidence 4678899999999999999999999999999999 5899999999997654321 1 23333322
Q ss_pred CcceeeeeecccccccccCccccc--------hHHHHH-HHHH---------------HHHHHHhhc-CCCceeeecCCC
Q 018809 87 PAFLEIHDIAGLVRGAHEGQGLGN--------SFLSHI-RAVD---------------GIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~~~~~~~--------~~l~~l-~~~d---------------~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
....++.|+..+.........+.. .+...+ ...| .-+.++|++ .+|+++++|
T Consensus 420 lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililD--- 496 (585)
T TIGR01192 420 LFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLD--- 496 (585)
T ss_pred cCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE---
Confidence 222344454443321100000000 000000 0000 015577777 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|..+++.+...+..+.+ .+++.. .+|+...+ ..+|++ ..|++|++...|+
T Consensus 497 Epts~LD~~~~~~i~~~l~~~~~-----~~tvI~-isH~~~~~-~~~d~i-~~l~~G~i~~~g~ 552 (585)
T TIGR01192 497 EATSALDVETEARVKNAIDALRK-----NRTTFI-IAHRLSTV-RNADLV-LFLDQGRLIEKGS 552 (585)
T ss_pred CCccCCCHHHHHHHHHHHHHHhC-----CCEEEE-EEcChHHH-HcCCEE-EEEECCEEEEECC
Confidence 99999999987665554432211 111111 24888776 459998 8889998876554
No 328
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.40 E-value=1e-13 Score=142.00 Aligned_cols=170 Identities=16% Similarity=0.214 Sum_probs=107.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~ 85 (350)
.=.+++..+++|++++|+|+||||||||+++|+|. .+|++|.|.++|.++..+. . .+.+|..
T Consensus 355 il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-----------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 423 (574)
T PRK11160 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRA-----------WDPQQGEILLNGQPIADYSEAALRQAISVVSQRV 423 (574)
T ss_pred ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCEEhhhCCHHHHHhheeEEcccc
Confidence 34678889999999999999999999999999999 6899999999998764322 1 2333333
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHH------------------------HHHHHHHHhhc-CCCceeeecCC
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA------------------------VDGIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~------------------------~d~~l~vv~a~-~~~~vl~ld~~ 140 (350)
....-++.|+..+.......... ...++..+. --.-+.++|++ .+|+++++|
T Consensus 424 ~lf~~ti~~Ni~~~~~~~~~~~i-~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililD-- 500 (574)
T PRK11160 424 HLFSATLRDNLLLAAPNASDEAL-IEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLD-- 500 (574)
T ss_pred hhhcccHHHHhhcCCCccCHHHH-HHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 22233455554443211000000 000000000 00115567777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|..+++.+...+..+.+ .+++ .-.+|....+. .+|++ ..|++|+++..|+
T Consensus 501 -E~ts~lD~~t~~~i~~~l~~~~~-----~~tv-iiitHr~~~~~-~~d~i-~~l~~G~i~~~g~ 556 (574)
T PRK11160 501 -EPTEGLDAETERQILELLAEHAQ-----NKTV-LMITHRLTGLE-QFDRI-CVMDNGQIIEQGT 556 (574)
T ss_pred -CCcccCCHHHHHHHHHHHHHHcC-----CCEE-EEEecChhHHH-hCCEE-EEEeCCeEEEeCC
Confidence 99999999997665554432211 1111 11148887664 48998 8889998876654
No 329
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.40 E-value=1.6e-13 Score=141.10 Aligned_cols=170 Identities=19% Similarity=0.232 Sum_probs=107.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~ 85 (350)
--.+++.++++|++++|+|+||||||||+++|+|. .+|++|.|.++|.++..+. . .|.+|..
T Consensus 350 iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl-----------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 418 (588)
T PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRV-----------FDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDA 418 (588)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCEEhhhCCHHHHHhheEEEecCc
Confidence 34678889999999999999999999999999999 6899999999997765432 1 2444443
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHH----------HH---------------HHHHHhhc-CCCceeeecC
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------DG---------------IFHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~----------d~---------------~l~vv~a~-~~~~vl~ld~ 139 (350)
.-..-++.|+..+.........+ ...++..... |. -+.++|++ .+|+++++|
T Consensus 419 ~lf~~Ti~~Ni~~~~~~~~d~~i-~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLD- 496 (588)
T PRK13657 419 GLFNRSIEDNIRVGRPDATDEEM-RAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILD- 496 (588)
T ss_pred ccccccHHHHHhcCCCCCCHHHH-HHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe-
Confidence 22234555555443211100000 0000000000 00 05577777 899999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|..+++.+...+..+. . .+++ .-.+|+...+ ..+|++ ..|++|++...++
T Consensus 497 --Epts~LD~~t~~~i~~~l~~~~---~--~~tv-IiitHr~~~~-~~~D~i-i~l~~G~i~~~g~ 552 (588)
T PRK13657 497 --EATSALDVETEAKVKAALDELM---K--GRTT-FIIAHRLSTV-RNADRI-LVFDNGRVVESGS 552 (588)
T ss_pred --CCccCCCHHHHHHHHHHHHHHh---c--CCEE-EEEEecHHHH-HhCCEE-EEEECCEEEEeCC
Confidence 9999999998766555432211 0 1111 1224887654 569998 8889998775544
No 330
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.39 E-value=1.7e-13 Score=116.90 Aligned_cols=142 Identities=20% Similarity=0.275 Sum_probs=88.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceee
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~ 92 (350)
.-..+++.+.+|+.++|+|+||+|||||+++|+|. .+|..|.+.++|..+...... .....+.+
T Consensus 14 ~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~-----------~~~~~G~i~~~~~~~~~~~~~-----~~~~~i~~ 77 (157)
T cd00267 14 ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL-----------LKPTSGEILIDGKDIAKLPLE-----ELRRRIGY 77 (157)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCccEEEECCEEcccCCHH-----HHHhceEE
Confidence 34677889999999999999999999999999999 578999999998643211000 00001111
Q ss_pred eeecccccccccCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018809 93 HDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEK 171 (350)
Q Consensus 93 ~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~ 171 (350)
+.- .+.|++ +++. +++++ .+|+++++| ||+.++|..+...+...+..+.+ . ..
T Consensus 78 ~~q----------lS~G~~--~r~~-------l~~~l~~~~~i~ilD---Ep~~~lD~~~~~~l~~~l~~~~~---~-~~ 131 (157)
T cd00267 78 VPQ----------LSGGQR--QRVA-------LARALLLNPDLLLLD---EPTSGLDPASRERLLELLRELAE---E-GR 131 (157)
T ss_pred Eee----------CCHHHH--HHHH-------HHHHHhcCCCEEEEe---CCCcCCCHHHHHHHHHHHHHHHH---C-CC
Confidence 100 112222 3333 33444 489999999 99999999886444443322111 0 11
Q ss_pred HHhhcccccHHHHHHHHHHHHHHhhcC
Q 018809 172 SMKRSNDKQLKIEHELCQRVKAWLQDG 198 (350)
Q Consensus 172 ~~~~~~~h~~~~~~~l~~~i~~~L~~g 198 (350)
.+ .-.+|+...+..+|+++ ..+.+|
T Consensus 132 ti-i~~sh~~~~~~~~~d~i-~~l~~g 156 (157)
T cd00267 132 TV-IIVTHDPELAELAADRV-IVLKDG 156 (157)
T ss_pred EE-EEEeCCHHHHHHhCCEE-EEEeCc
Confidence 11 11249998888888876 444443
No 331
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.39 E-value=1.6e-13 Score=140.02 Aligned_cols=166 Identities=11% Similarity=0.192 Sum_probs=100.5
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCc-chhHHHhhccCCCCCCcceeee
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE-RFEWLCQLFKPKSAVPAFLEIH 93 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~-~l~~l~~~~~~~~~~~~~l~~~ 93 (350)
.+++..+.+|+++||+|+||||||||+++|+|. .+|++|.|.+++. .+.++ ++.....+..+++.
T Consensus 339 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~-----------~~p~~G~i~~~~~~~i~~v---~q~~~~~~~~~tv~ 404 (552)
T TIGR03719 339 DDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ-----------EQPDSGTIKIGETVKLAYV---DQSRDALDPNKTVW 404 (552)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCeEEEECCceEEEEE---eCCccccCCCCcHH
Confidence 568889999999999999999999999999999 5889999988432 11111 11101122223344
Q ss_pred eeccccccc---ccCccccchHHHHHHHH---------------HHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHH
Q 018809 94 DIAGLVRGA---HEGQGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAEL 154 (350)
Q Consensus 94 D~~g~~~~~---~~~~~~~~~~l~~l~~~---------------d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el 154 (350)
+...+.... .........++..+... ..-+.+++++ .+|+++++| ||++++|....+.
T Consensus 405 e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLD---EPt~~LD~~~~~~ 481 (552)
T TIGR03719 405 EEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLD---EPTNDLDVETLRA 481 (552)
T ss_pred HHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEe---CCCCCCCHHHHHH
Confidence 333221100 00000000111111110 0114566776 799999999 9999999999766
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhc-CCcc-ccCCC
Q 018809 155 RLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD-GKDV-RLGDW 206 (350)
Q Consensus 155 ~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~-g~~~-~~~~~ 206 (350)
+...+..+ ...+... +|+...+..+|+++ ..|++ |+.. +.+++
T Consensus 482 l~~~l~~~-------~~~viiv-sHd~~~~~~~~d~i-~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 482 LEEALLEF-------AGCAVVI-SHDRWFLDRIATHI-LAFEGDSHVEWFEGNY 526 (552)
T ss_pred HHHHHHHC-------CCeEEEE-eCCHHHHHHhCCEE-EEEECCCeEEEeCCCH
Confidence 66554432 1122223 49999999999999 77876 4554 34554
No 332
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.39 E-value=5.6e-13 Score=137.59 Aligned_cols=176 Identities=14% Similarity=0.162 Sum_probs=109.6
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC---cceEEEeCCcchhH--HHh--hccCCC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP---NEARVNIPDERFEW--LCQ--LFKPKS 84 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p---~~G~i~~~~~~l~~--l~~--~~~~~~ 84 (350)
+--+++++.+++|+.++|+||||||||||+++|+|.. ++ ..|.|.++|..+.. +.. .|.+|.
T Consensus 39 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~-----------~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~ 107 (617)
T TIGR00955 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS-----------PKGVKGSGSVLLNGMPIDAKEMRAISAYVQQD 107 (617)
T ss_pred ccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-----------CCCCcceeEEEECCEECCHHHHhhhceeeccc
Confidence 3447899999999999999999999999999999983 34 37999999976431 111 233332
Q ss_pred -CCCcceeeeeecccccccccCcc--------ccchHHHHHHHHH--------------------HHHHHHhhc-CCCce
Q 018809 85 -AVPAFLEIHDIAGLVRGAHEGQG--------LGNSFLSHIRAVD--------------------GIFHVLRAF-EDPDI 134 (350)
Q Consensus 85 -~~~~~l~~~D~~g~~~~~~~~~~--------~~~~~l~~l~~~d--------------------~~l~vv~a~-~~~~v 134 (350)
.....+++.|+..+......... .....++.+...+ .-+.+++++ .+|++
T Consensus 108 ~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~v 187 (617)
T TIGR00955 108 DLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL 187 (617)
T ss_pred cccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCE
Confidence 22334556555443211100000 0011111111000 013455555 79999
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccH-HHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQL-KIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 135 l~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~-~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
+++| ||++++|......+...+..+.+ -..++... +|+. ..+.+++|++ .+|.+|+.++.|+.+
T Consensus 188 lllD---EPtsgLD~~~~~~l~~~L~~l~~----~g~tvi~~-~hq~~~~i~~~~D~i-~ll~~G~~v~~G~~~ 252 (617)
T TIGR00955 188 LFCD---EPTSGLDSFMAYSVVQVLKGLAQ----KGKTIICT-IHQPSSELFELFDKI-ILMAEGRVAYLGSPD 252 (617)
T ss_pred EEee---CCCcchhHHHHHHHHHHHHHHHh----CCCEEEEE-eCCCCHHHHHHhceE-EEeeCCeEEEECCHH
Confidence 9999 99999999987665555433221 11111112 3887 4788999999 899999999888754
No 333
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.39 E-value=1.2e-13 Score=140.95 Aligned_cols=164 Identities=13% Similarity=0.195 Sum_probs=100.4
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCc-chhHHHhhccCCC--CCCccee
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE-RFEWLCQLFKPKS--AVPAFLE 91 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~-~l~~l~~~~~~~~--~~~~~l~ 91 (350)
.+++..+.+|+++||+|+||||||||+++|+|. .+|++|.|.+++. .+. |.++. ..+..++
T Consensus 341 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~-----------~~p~~G~i~~~~~~~i~-----~v~q~~~~~~~~~t 404 (556)
T PRK11819 341 DDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ-----------EQPDSGTIKIGETVKLA-----YVDQSRDALDPNKT 404 (556)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCceEEE-----EEeCchhhcCCCCC
Confidence 568889999999999999999999999999999 6899999988532 111 11221 1222234
Q ss_pred eeeeccccccc---ccCccccchHHHHHHHH---------------HHHHHHHhhc-CCCceeeecCCCCCCchhHHHHH
Q 018809 92 IHDIAGLVRGA---HEGQGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (350)
Q Consensus 92 ~~D~~g~~~~~---~~~~~~~~~~l~~l~~~---------------d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~ 152 (350)
+.+...+.... .........++..+... ..-+.+++++ .+|+++++| ||++++|....
T Consensus 405 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD---EPt~~LD~~~~ 481 (556)
T PRK11819 405 VWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLD---EPTNDLDVETL 481 (556)
T ss_pred HHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHH
Confidence 44433221100 00000000111111110 0114566776 799999999 99999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhc-CCcc-ccCCC
Q 018809 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD-GKDV-RLGDW 206 (350)
Q Consensus 153 el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~-g~~~-~~~~~ 206 (350)
+.+...+..+ ...+... +|+...+..+|+++ .+|++ |+.. +.+++
T Consensus 482 ~~l~~~l~~~-------~~tvi~v-tHd~~~~~~~~d~i-~~l~~~g~~~~~~g~~ 528 (556)
T PRK11819 482 RALEEALLEF-------PGCAVVI-SHDRWFLDRIATHI-LAFEGDSQVEWFEGNF 528 (556)
T ss_pred HHHHHHHHhC-------CCeEEEE-ECCHHHHHHhCCEE-EEEECCCeEEEecCCH
Confidence 6666554332 1122122 49999999999998 77875 5554 34544
No 334
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.39 E-value=2.1e-13 Score=137.28 Aligned_cols=170 Identities=14% Similarity=0.182 Sum_probs=103.7
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH------H--hhccCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL------C--QLFKPKSA 85 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l------~--~~~~~~~~ 85 (350)
-.+++.+++.|+++||+|+||||||||+++|+|. .+|.+|.|.++|.++... . -.|.++..
T Consensus 264 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~ 332 (491)
T PRK10982 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGI-----------REKSAGTITLHGKKINNHNANEAINHGFALVTEER 332 (491)
T ss_pred cceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCC-----------CcCCccEEEECCEECCCCCHHHHHHCCCEEcCCch
Confidence 4667889999999999999999999999999999 589999999998654321 1 11222221
Q ss_pred ----CCcceee-----eeecccccccc---cC---ccccchHHHHHHHH-H--------------HHHHHHhhc-CCCce
Q 018809 86 ----VPAFLEI-----HDIAGLVRGAH---EG---QGLGNSFLSHIRAV-D--------------GIFHVLRAF-EDPDI 134 (350)
Q Consensus 86 ----~~~~l~~-----~D~~g~~~~~~---~~---~~~~~~~l~~l~~~-d--------------~~l~vv~a~-~~~~v 134 (350)
+...+++ .+......... .. ......+++.+... + .-+.+++++ .+|++
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~i 412 (491)
T PRK10982 333 RSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEI 412 (491)
T ss_pred hhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCE
Confidence 1111221 11110000000 00 00001111111110 0 014566777 79999
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcccc
Q 018809 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (350)
Q Consensus 135 l~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~ 203 (350)
+++| ||++++|....+.+...+..+.+ ....+... +|+...+..+||++ .+|.+|+++..
T Consensus 413 llLD---EPt~gLD~~~~~~~~~~l~~l~~----~~~tvi~v-sHd~~~~~~~~d~v-~~l~~g~i~~~ 472 (491)
T PRK10982 413 LMLD---EPTRGIDVGAKFEIYQLIAELAK----KDKGIIII-SSEMPELLGITDRI-LVMSNGLVAGI 472 (491)
T ss_pred EEEc---CCCcccChhHHHHHHHHHHHHHH----CCCEEEEE-CCChHHHHhhCCEE-EEEECCEEEEE
Confidence 9999 99999999998666655433321 11222122 49999999999999 88899988743
No 335
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.38 E-value=1.4e-13 Score=140.92 Aligned_cols=167 Identities=16% Similarity=0.178 Sum_probs=105.0
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~ 85 (350)
.=++++.++++|++++|+|+||||||||+++|+|. .+|++|.|.++|.++..+. . .+.+|..
T Consensus 330 ~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 398 (569)
T PRK10789 330 ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRH-----------FDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTP 398 (569)
T ss_pred cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCCCEEEECCEEHhhCCHHHHHhheEEEccCC
Confidence 34678899999999999999999999999999999 6899999999998764321 1 2333332
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHH----------------------------HHHHHHHhhc-CCCceee
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~----------------------------d~~l~vv~a~-~~~~vl~ 136 (350)
....-++.|+..+........ .....++.+ ---+.++|++ .+|++++
T Consensus 399 ~lf~~ti~~Ni~~~~~~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ill 474 (569)
T PRK10789 399 FLFSDTVANNIALGRPDATQQ----EIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI 474 (569)
T ss_pred eeccccHHHHHhcCCCCCCHH----HHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 222234444443332111000 000000000 0114577777 8999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+| ||++.+|..+++.+...+..+.+ .+++.. .+|....+ ..+|++ ..|++|+++..|+
T Consensus 475 lD---Epts~LD~~~~~~i~~~l~~~~~-----~~tii~-itH~~~~~-~~~d~i-~~l~~G~i~~~g~ 532 (569)
T PRK10789 475 LD---DALSAVDGRTEHQILHNLRQWGE-----GRTVII-SAHRLSAL-TEASEI-LVMQHGHIAQRGN 532 (569)
T ss_pred EE---CccccCCHHHHHHHHHHHHHHhC-----CCEEEE-EecchhHH-HcCCEE-EEEeCCEEEEecC
Confidence 99 99999999987665554432210 111111 24887655 458888 7888898876654
No 336
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.38 E-value=1.8e-13 Score=139.56 Aligned_cols=168 Identities=15% Similarity=0.219 Sum_probs=103.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCc-chhHHHhhccCCCCCCccee
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE-RFEWLCQLFKPKSAVPAFLE 91 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~-~l~~l~~~~~~~~~~~~~l~ 91 (350)
.-.+++..+.+|++++|+|+||||||||+++|+|. .+|++|.|.+++. .+.++ ++ .......++
T Consensus 20 il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~-----------~~p~~G~i~~~~~~~i~~v---~Q-~~~~~~~~t 84 (552)
T TIGR03719 20 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV-----------DKEFNGEARPAPGIKVGYL---PQ-EPQLDPTKT 84 (552)
T ss_pred eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEecCCCEEEEE---ec-cCCCCCCCc
Confidence 44678999999999999999999999999999999 5789999988642 11111 11 111122234
Q ss_pred eeeeccccccc---------------cc-Ccc----------------------ccch---HHH------------HH-H
Q 018809 92 IHDIAGLVRGA---------------HE-GQG----------------------LGNS---FLS------------HI-R 117 (350)
Q Consensus 92 ~~D~~g~~~~~---------------~~-~~~----------------------~~~~---~l~------------~l-~ 117 (350)
+.|+..+.... .. ... ...+ ++. .+ .
T Consensus 85 v~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSg 164 (552)
T TIGR03719 85 VRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSG 164 (552)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCH
Confidence 44443221000 00 000 0000 000 00 0
Q ss_pred HHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhh
Q 018809 118 AVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQ 196 (350)
Q Consensus 118 ~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~ 196 (350)
.-..-+.+++++ .+|+++++| ||++.+|....+.+...+.. +...+... +|+...+..+|+++ .+|+
T Consensus 165 Gqkqrv~la~al~~~p~lLLLD---EPt~~LD~~~~~~l~~~L~~-------~~~tvIii-sHd~~~~~~~~d~v-~~l~ 232 (552)
T TIGR03719 165 GERRRVALCRLLLSKPDMLLLD---EPTNHLDAESVAWLEQHLQE-------YPGTVVAV-THDRYFLDNVAGWI-LELD 232 (552)
T ss_pred HHHHHHHHHHHHhcCCCEEEEc---CCCCCCChHHHHHHHHHHHh-------CCCeEEEE-eCCHHHHHhhcCeE-EEEE
Confidence 001115567777 799999999 99999999987554443321 11122222 49999999999999 8899
Q ss_pred cCCcc-ccCCCC
Q 018809 197 DGKDV-RLGDWK 207 (350)
Q Consensus 197 ~g~~~-~~~~~t 207 (350)
+|+++ +.++++
T Consensus 233 ~g~i~~~~g~~~ 244 (552)
T TIGR03719 233 RGRGIPWEGNYS 244 (552)
T ss_pred CCEEEEecCCHH
Confidence 99875 556654
No 337
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.38 E-value=1e-13 Score=146.97 Aligned_cols=165 Identities=19% Similarity=0.270 Sum_probs=111.9
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-------hccCCCCCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-------~~~~~~~~~ 87 (350)
+.++..|++|+.++|||++||||||+++.|.+. .+|+.|.|.++|.++..+.. ....|..+-
T Consensus 370 ~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rf-----------ydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvl 438 (1228)
T KOG0055|consen 370 KGVSLKIPSGQTVALVGPSGSGKSTLIQLLARF-----------YDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVL 438 (1228)
T ss_pred CCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHh-----------cCCCCceEEEcCccchhcchHHHHhhcCeeeechhh
Confidence 568889999999999999999999999999999 69999999999987654321 112233333
Q ss_pred cceeeeeecccccccccCccccchHHHHHHHH---HHH-------------------------HHHHhhc-CCCceeeec
Q 018809 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV---DGI-------------------------FHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~---d~~-------------------------l~vv~a~-~~~~vl~ld 138 (350)
+..++.|+..+++...... +..+..+.+ |.+ +.++|++ .+|+|++||
T Consensus 439 F~~tI~eNI~~G~~dat~~----~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLD 514 (1228)
T KOG0055|consen 439 FATTIRENIRYGKPDATRE----EIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLD 514 (1228)
T ss_pred hcccHHHHHhcCCCcccHH----HHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEec
Confidence 4456666666654321100 011111111 111 5577777 799999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|...+......++...+- + .+ .-.+|.+..+.. .|+| .++++|+++..|+
T Consensus 515 ---EaTSaLD~~se~~Vq~ALd~~~~g--r--TT--ivVaHRLStIrn-aD~I-~v~~~G~IvE~G~ 570 (1228)
T KOG0055|consen 515 ---EATSALDAESERVVQEALDKASKG--R--TT--IVVAHRLSTIRN-ADKI-AVMEEGKIVEQGT 570 (1228)
T ss_pred ---CcccccCHHHHHHHHHHHHHhhcC--C--eE--EEEeeehhhhhc-cCEE-EEEECCEEEEecC
Confidence 999999999986666554322211 1 00 011499999888 8888 8999999987664
No 338
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.37 E-value=2e-13 Score=140.01 Aligned_cols=165 Identities=19% Similarity=0.250 Sum_probs=103.7
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCCCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAVP 87 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~~~ 87 (350)
++++.++++|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++..+. . .|.+|...-
T Consensus 357 ~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl-----------~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~l 425 (576)
T TIGR02204 357 DGLNLTVRPGETVALVGPSGAGKSTLFQLLLRF-----------YDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVL 425 (576)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHHhc-----------cCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCcc
Confidence 677889999999999999999999999999999 6899999999997764321 1 244444333
Q ss_pred cceeeeeecccccccccCccccchHHHHHHHH----------------------------HHHHHHHhhc-CCCceeeec
Q 018809 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~----------------------------d~~l~vv~a~-~~~~vl~ld 138 (350)
..-++.|+..+....... .+..+.++.+ -.-+.++|++ .+|+++++|
T Consensus 426 f~~Ti~~Ni~~~~~~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililD 501 (576)
T TIGR02204 426 FAASVMENIRYGRPDATD----EEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLD 501 (576)
T ss_pred ccccHHHHHhcCCCCCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEe
Confidence 333444444432211000 0000000000 0014566776 799999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|..+++.+...+..+.+ .+++ .-.+|+.... ..+|++ ..|++|++...|+
T Consensus 502 ---Epts~lD~~~~~~i~~~l~~~~~-----~~t~-IiitH~~~~~-~~~d~v-i~l~~g~~~~~g~ 557 (576)
T TIGR02204 502 ---EATSALDAESEQLVQQALETLMK-----GRTT-LIIAHRLATV-LKADRI-VVMDQGRIVAQGT 557 (576)
T ss_pred ---CcccccCHHHHHHHHHHHHHHhC-----CCEE-EEEecchHHH-HhCCEE-EEEECCEEEeeec
Confidence 99999999987555444322110 1111 1124887654 568888 7788898765544
No 339
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.37 E-value=1.9e-13 Score=127.72 Aligned_cols=165 Identities=15% Similarity=0.183 Sum_probs=95.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceee
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~ 92 (350)
.-.+++.++.+|+++||+|+||||||||+++|+|. .+|.+|.|.++|. +.++ ++.......++
T Consensus 52 vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl-----------~~p~~G~I~i~g~-i~yv-----~q~~~l~~~tv 114 (282)
T cd03291 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE-----------LEPSEGKIKHSGR-ISFS-----SQFSWIMPGTI 114 (282)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCE-EEEE-----eCcccccccCH
Confidence 34678889999999999999999999999999999 6899999998772 2111 11110000122
Q ss_pred eeeccccccccc--------CccccchHHH---------------HHH-HHHHHHHHHhhc-CCCceeeecCCCCCCchh
Q 018809 93 HDIAGLVRGAHE--------GQGLGNSFLS---------------HIR-AVDGIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (350)
Q Consensus 93 ~D~~g~~~~~~~--------~~~~~~~~l~---------------~l~-~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~l 147 (350)
.|...+...... ..++. ..+. .+. ....-+.+++++ .+|+++++| ||++++
T Consensus 115 ~enl~~~~~~~~~~~~~~l~~~~l~-~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLD---EPt~gL 190 (282)
T cd03291 115 KENIIFGVSYDEYRYKSVVKACQLE-EDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFGYL 190 (282)
T ss_pred HHHhhcccccCHHHHHHHHHHhCCH-HHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEE---CCCccC
Confidence 222211100000 00000 0000 000 000114566666 799999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 148 d~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|....+.+...+ .+.+.. ...+... +|+...+ ..|+++ .+|.+|+++..++
T Consensus 191 D~~~~~~l~~~l---l~~~~~-~~tIiii-sH~~~~~-~~~d~i-~~l~~G~i~~~g~ 241 (282)
T cd03291 191 DVFTEKEIFESC---VCKLMA-NKTRILV-TSKMEHL-KKADKI-LILHEGSSYFYGT 241 (282)
T ss_pred CHHHHHHHHHHH---HHHhhC-CCEEEEE-eCChHHH-HhCCEE-EEEECCEEEEECC
Confidence 998865444321 111111 1112122 4888876 479998 8889998776554
No 340
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.37 E-value=4.8e-14 Score=134.49 Aligned_cols=158 Identities=15% Similarity=0.227 Sum_probs=97.4
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH---h--hccCCC-CCCcceeeeeeccccccc
Q 018809 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC---Q--LFKPKS-AVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 29 liG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~---~--~~~~~~-~~~~~l~~~D~~g~~~~~ 102 (350)
|+||||||||||+++|+|. .+|++|.|.++|+++.... . .|.++. ..+..+++.++..+....
T Consensus 1 l~G~nGsGKSTLl~~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~ 69 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGF-----------EQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKM 69 (325)
T ss_pred CcCCCCCCHHHHHHHHHCC-----------CCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhh
Confidence 6899999999999999999 6899999999987653211 0 122222 223345566655432110
Q ss_pred cc-C-cc---ccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHH
Q 018809 103 HE-G-QG---LGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFM 162 (350)
Q Consensus 103 ~~-~-~~---~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l 162 (350)
.. . .. .....++.+...+ .-+.+++++ .+|+++++| ||++++|....+.+...+..+
T Consensus 70 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLD---EP~s~LD~~~~~~l~~~l~~l 146 (325)
T TIGR01187 70 RKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLD---EPLSALDKKLRDQMQLELKTI 146 (325)
T ss_pred cCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCCccCCHHHHHHHHHHHHHH
Confidence 00 0 00 0011111111000 115677877 899999999 999999999876666554433
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 163 ERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 163 ~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
.+. ....+... +|+..++..+||++ .+|.+|++...++
T Consensus 147 ~~~---~g~tiiiv-THd~~e~~~~~d~i-~vl~~G~i~~~g~ 184 (325)
T TIGR01187 147 QEQ---LGITFVFV-THDQEEAMTMSDRI-AIMRKGKIAQIGT 184 (325)
T ss_pred HHh---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 221 11122122 49999999999999 8999999876554
No 341
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.37 E-value=5.9e-13 Score=135.61 Aligned_cols=168 Identities=17% Similarity=0.234 Sum_probs=105.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~ 85 (350)
.=++++.++++|++++|+|+||||||||+++|+|. .+|.+|.|.++|.++..+. . .|.+|..
T Consensus 333 ~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~-----------~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~ 401 (544)
T TIGR01842 333 TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGI-----------WPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDV 401 (544)
T ss_pred ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEehhhCCHHHHhhheEEecCCc
Confidence 34678899999999999999999999999999999 6899999999997654321 1 2334432
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHH-------------H---------------HHHHHHhhc-CCCceee
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV-------------D---------------GIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~-------------d---------------~~l~vv~a~-~~~~vl~ 136 (350)
....-++.|+..+....... ++..+.++.+ | .-+.++|++ .+|++++
T Consensus 402 ~lf~~ti~~Ni~~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ili 477 (544)
T TIGR01842 402 ELFPGTVAENIARFGENADP----EKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV 477 (544)
T ss_pred ccccccHHHHHhccCCCCCH----HHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 22223444444322110000 0010111100 0 015577777 8999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+| ||++.+|..+++.+...+..+.. ..+++.. .+|....+ ..||++ ..|++|+++..|+
T Consensus 478 lD---Epts~LD~~~~~~i~~~l~~~~~----~~~tvi~-ith~~~~~-~~~d~i-~~l~~G~i~~~g~ 536 (544)
T TIGR01842 478 LD---EPNSNLDEEGEQALANAIKALKA----RGITVVV-ITHRPSLL-GCVDKI-LVLQDGRIARFGE 536 (544)
T ss_pred Ee---CCccccCHHHHHHHHHHHHHHhh----CCCEEEE-EeCCHHHH-HhCCEE-EEEECCEEEeeCC
Confidence 99 99999999887555444322210 0111111 24888654 578998 8889998876654
No 342
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.36 E-value=5.9e-13 Score=112.57 Aligned_cols=166 Identities=20% Similarity=0.305 Sum_probs=99.0
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-------------hcc
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------------LFK 81 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-------------~~~ 81 (350)
..+...+.+|+.++||||+|||||||+-.|+|++ .|++|.|.+.|+.+..+.. +|+
T Consensus 27 ~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd-----------~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQ 95 (228)
T COG4181 27 KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD-----------DPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQ 95 (228)
T ss_pred ecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC-----------CCCCceEEEcCcchhhcCHHHHHHhhccceeEEEE
Confidence 5677889999999999999999999999999994 8999999999987655332 233
Q ss_pred CCCCCCcceeeeeecccc---ccccc--CccccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCC
Q 018809 82 PKSAVPAFLEIHDIAGLV---RGAHE--GQGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 82 ~~~~~~~~l~~~D~~g~~---~~~~~--~~~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~ 141 (350)
+...+| .++-.+++.+. .+... ......+.+..+...+. -+.++||| ..|++++-|
T Consensus 96 SF~Lip-~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfAD--- 171 (228)
T COG4181 96 SFHLIP-NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFAD--- 171 (228)
T ss_pred eeeccc-cchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEecc---
Confidence 333333 33333333322 22110 00011112222211111 15688999 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~ 201 (350)
||+..+|-.+-+.+...+-.+.+.. ..+. .-.+|+.. ...=|+|+ ..|..|++.
T Consensus 172 EPTGNLD~~Tg~~iaDLlF~lnre~---G~Tl-VlVTHD~~-LA~Rc~R~-~r~~~G~l~ 225 (228)
T COG4181 172 EPTGNLDRATGDKIADLLFALNRER---GTTL-VLVTHDPQ-LAARCDRQ-LRLRSGRLV 225 (228)
T ss_pred CCCCCcchhHHHHHHHHHHHHhhhc---CceE-EEEeCCHH-HHHhhhhe-eeeecceec
Confidence 9999999877544433322111110 0000 11137664 34557777 566777654
No 343
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.35 E-value=1.6e-12 Score=110.34 Aligned_cols=172 Identities=15% Similarity=0.218 Sum_probs=106.7
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh--------hccCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--------LFKPKS 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~--------~~~~~~ 84 (350)
+--|+++.+..|+++-+|||||||||||+-.++|. .|-+|.|.+.|..+..... +..++.
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm------------~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq 81 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM------------TSGSGSIQFAGQPLEAWSATELARHRAYLSQQQ 81 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCC------------CCCCceEEECCcchhHHhHhHHHHHHHHHhhcc
Confidence 44678889999999999999999999999999998 5889999999987654321 233333
Q ss_pred CCCcceeeeeecccccccccCccccchHH---------------------HHHHHHHHHHHHHhhc-CCCceeeecCCCC
Q 018809 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFL---------------------SHIRAVDGIFHVLRAF-EDPDIIHVDDSVD 142 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~~~~~~~~l---------------------~~l~~~d~~l~vv~a~-~~~~vl~ld~~~e 142 (350)
.-++.+-++....++.++....+..+..- +++|.+-+.+.|.... -+..++++| |
T Consensus 82 ~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllD---E 158 (248)
T COG4138 82 TPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLD---E 158 (248)
T ss_pred CCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEec---C
Confidence 33445555555444443321111111111 2223332223332222 222478889 9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 143 P~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|.+.+|+..+..+...+.. +-.....+..++ |++.-...-.+++ .+|..|+.+..|.
T Consensus 159 P~~~LDvAQ~~aLdrll~~----~c~~G~~vims~-HDLNhTLrhA~~~-wLL~rG~l~~~G~ 215 (248)
T COG4138 159 PMNSLDVAQQSALDRLLSA----LCQQGLAIVMSS-HDLNHTLRHAHRA-WLLKRGKLLASGR 215 (248)
T ss_pred CCcchhHHHHHHHHHHHHH----HHhCCcEEEEec-cchhhHHHHHHHH-HHHhcCeEEeecc
Confidence 9999999876444333221 211122222333 8888888888999 8889999887764
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.35 E-value=3.3e-13 Score=139.75 Aligned_cols=167 Identities=19% Similarity=0.206 Sum_probs=97.5
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcc-hhHHHhhccCCCCCCcceee
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-FEWLCQLFKPKSAVPAFLEI 92 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~-l~~l~~~~~~~~~~~~~l~~ 92 (350)
-.++++.+.+|+++||+|+||||||||+++|+|. ..|++|.|.+++.. +.++.+... ... ...+
T Consensus 19 l~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~-----------~~p~~G~I~~~~~~~~~~l~q~~~-~~~---~~~v 83 (635)
T PRK11147 19 LDNAELHIEDNERVCLVGRNGAGKSTLMKILNGE-----------VLLDDGRIIYEQDLIVARLQQDPP-RNV---EGTV 83 (635)
T ss_pred EeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCC-----------CCCCCeEEEeCCCCEEEEeccCCC-CCC---CCCH
Confidence 3678899999999999999999999999999998 57899999887631 111111000 000 0000
Q ss_pred eeec------------------------------cccc------ccccCccccch---HHHHHH------------HHHH
Q 018809 93 HDIA------------------------------GLVR------GAHEGQGLGNS---FLSHIR------------AVDG 121 (350)
Q Consensus 93 ~D~~------------------------------g~~~------~~~~~~~~~~~---~l~~l~------------~~d~ 121 (350)
.+.+ .... ....+.....+ ++..+. .-..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekq 163 (635)
T PRK11147 84 YDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLR 163 (635)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHH
Confidence 0000 0000 00000000000 000000 0001
Q ss_pred HHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCc
Q 018809 122 IFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200 (350)
Q Consensus 122 ~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~ 200 (350)
-+.+++++ .+|+++++| ||++++|+...+.+...+ .++...+... +|+...+..+|+++ ..|.+|++
T Consensus 164 Rv~LAraL~~~P~lLLLD---EPt~~LD~~~~~~L~~~L-------~~~~~tvliv-sHd~~~l~~~~d~i-~~L~~G~i 231 (635)
T PRK11147 164 KAALGRALVSNPDVLLLD---EPTNHLDIETIEWLEGFL-------KTFQGSIIFI-SHDRSFIRNMATRI-VDLDRGKL 231 (635)
T ss_pred HHHHHHHHhcCCCEEEEc---CCCCccCHHHHHHHHHHH-------HhCCCEEEEE-eCCHHHHHHhcCeE-EEEECCEE
Confidence 14566666 799999999 999999998864433332 2222222122 49999999999999 88899988
Q ss_pred c-ccCCCC
Q 018809 201 V-RLGDWK 207 (350)
Q Consensus 201 ~-~~~~~t 207 (350)
+ +.|+++
T Consensus 232 ~~~~g~~~ 239 (635)
T PRK11147 232 VSYPGNYD 239 (635)
T ss_pred EEecCCHH
Confidence 6 446654
No 345
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.33 E-value=2.5e-13 Score=125.89 Aligned_cols=181 Identities=18% Similarity=0.212 Sum_probs=106.2
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-------------
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ------------- 78 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~------------- 78 (350)
++-++++.++.+|+++||||.+||||||+.++++|+... ....-.+|.|.++|+++-.+..
T Consensus 19 ~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~------~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~m 92 (316)
T COG0444 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPK------PNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAM 92 (316)
T ss_pred EEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCC------CCCeEeeeEEEECCcccccCCHHHHHhhcCceEEE
Confidence 466899999999999999999999999999999998310 0011256899999975432221
Q ss_pred hccCCC-CCCcce----eeeeeccccccc-ccC--ccccchHHHHHHHHHH--H---------------HHHHhhc-CCC
Q 018809 79 LFKPKS-AVPAFL----EIHDIAGLVRGA-HEG--QGLGNSFLSHIRAVDG--I---------------FHVLRAF-EDP 132 (350)
Q Consensus 79 ~~~~~~-~~~~~l----~~~D~~g~~~~~-~~~--~~~~~~~l~~l~~~d~--~---------------l~vv~a~-~~~ 132 (350)
+||... .....+ ++.++.-.+... .+. .......++.++.-+. . +.++-|+ .+|
T Consensus 93 IfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P 172 (316)
T COG0444 93 IFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNP 172 (316)
T ss_pred EEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCC
Confidence 122100 000000 111111111100 000 0000011111111000 1 2334444 699
Q ss_pred ceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 133 DIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 133 ~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
++++.| ||++.+|+..+..++..+..+.+. ....+.. -+|++..+.++||+| .+|..|+++-.++.
T Consensus 173 ~LlIAD---EPTTALDvt~QaqIl~Ll~~l~~e---~~~aiil-ITHDl~vva~~aDri-~VMYaG~iVE~g~~ 238 (316)
T COG0444 173 KLLIAD---EPTTALDVTVQAQILDLLKELQRE---KGTALIL-ITHDLGVVAEIADRV-AVMYAGRIVEEGPV 238 (316)
T ss_pred CEEEeC---CCcchhhHHHHHHHHHHHHHHHHh---cCCEEEE-EeCCHHHHHHhcceE-EEEECcEEEEeCCH
Confidence 999999 999999999987777766555442 1111111 149999999999999 99999998876653
No 346
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.33 E-value=1.9e-12 Score=131.43 Aligned_cols=132 Identities=20% Similarity=0.319 Sum_probs=85.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~ 85 (350)
.-++++.++++|++++|+|++|||||||+|+|+|. .+|++|.|.++|.++..+. . .|.+|..
T Consensus 337 il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~-----------~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~ 405 (529)
T TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGF-----------VDPTEGSIAVNGVPLADADADSWRDQIAWVPQHP 405 (529)
T ss_pred cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEehhhCCHHHHHhheEEEcCCC
Confidence 44678899999999999999999999999999999 6899999999998764431 1 2334433
Q ss_pred CCcceeeeeecccccccccCcccc--------chHHHHHH----------------HHHHHHHHHhhc-CCCceeeecCC
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLG--------NSFLSHIR----------------AVDGIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~--------~~~l~~l~----------------~~d~~l~vv~a~-~~~~vl~ld~~ 140 (350)
.-...++.|+..+.........+. ..+.+.+. .-.--+.++|++ .+|+++++|
T Consensus 406 ~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililD-- 483 (529)
T TIGR02857 406 FLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLD-- 483 (529)
T ss_pred cccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 222345555544432111000000 00000000 000115677887 899999999
Q ss_pred CCCCchhHHHHHHHHHHH
Q 018809 141 VDPVRDLEVISAELRLKD 158 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~ 158 (350)
||++.+|..+++.+...
T Consensus 484 -E~ts~lD~~~~~~i~~~ 500 (529)
T TIGR02857 484 -EPTAHLDAETEALVTEA 500 (529)
T ss_pred -CcccccCHHHHHHHHHH
Confidence 99999999997655443
No 347
>PLN03232 ABC transporter C family member; Provisional
Probab=99.32 E-value=1.2e-12 Score=146.56 Aligned_cols=167 Identities=17% Similarity=0.239 Sum_probs=105.7
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~ 85 (350)
.=++++.+|++|+++||||++|||||||+++|.|. .+|++|.|.++|.++..+. . .+.||..
T Consensus 1251 vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl-----------~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp 1319 (1495)
T PLN03232 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRI-----------VELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSP 1319 (1495)
T ss_pred ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCCceEEECCEEhhhCCHHHHHhhcEEECCCC
Confidence 34678889999999999999999999999999999 6899999999998765432 1 2334432
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHH----------------------------HHHHHHHhhc-CCCceee
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~----------------------------d~~l~vv~a~-~~~~vl~ 136 (350)
.-..-++.|+......... .+..+.++.+ .-.+.++||+ .+|++++
T Consensus 1320 ~LF~gTIr~NL~~~~~~sd-----eei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILI 1394 (1495)
T PLN03232 1320 VLFSGTVRFNIDPFSEHND-----ADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILV 1394 (1495)
T ss_pred eeeCccHHHHcCCCCCCCH-----HHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 2222233333322111000 0000001100 0114566776 7999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
+| ||++.+|..++..+...+... .+ .+++ ..-+|.+..+.. +|+| ..|++|+++..|+.
T Consensus 1395 LD---EATSaLD~~Te~~Iq~~L~~~---~~--~~Tv-I~IAHRl~ti~~-~DrI-lVL~~G~ivE~Gt~ 1453 (1495)
T PLN03232 1395 LD---EATASVDVRTDSLIQRTIREE---FK--SCTM-LVIAHRLNTIID-CDKI-LVLSSGQVLEYDSP 1453 (1495)
T ss_pred EE---CCcccCCHHHHHHHHHHHHHH---cC--CCEE-EEEeCCHHHHHh-CCEE-EEEECCEEEEECCH
Confidence 99 999999998875554433211 00 0111 112499977765 8999 88999998866653
No 348
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.32 E-value=2.2e-12 Score=110.26 Aligned_cols=174 Identities=20% Similarity=0.293 Sum_probs=102.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HH----hhccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LC----QLFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~----~~~~~~ 83 (350)
+-.+++++++.|..+|+||.||||||||.++|+|. ++|.+|.+.++|+.+.+ .+ .+|+..
T Consensus 28 AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGm-----------i~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDp 96 (267)
T COG4167 28 AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM-----------IEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDP 96 (267)
T ss_pred cccceEEEecCCcEEEEEccCCCcHhHHHHHHhcc-----------cCCCCceEEECCccccccchHhhhhheeeeecCC
Confidence 44789999999999999999999999999999999 79999999999976532 11 133321
Q ss_pred C-CCCcce---eeeeecccccccccCccccchHHHHHHHHHHH------------------HHHHhhc-CCCceeeecCC
Q 018809 84 S-AVPAFL---EIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGI------------------FHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 84 ~-~~~~~l---~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~------------------l~vv~a~-~~~~vl~ld~~ 140 (350)
+ .+...+ ++.|-|--............+..+.++.+.+. +.++||+ -+|.+++.|
T Consensus 97 nts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaD-- 174 (267)
T COG4167 97 NTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIAD-- 174 (267)
T ss_pred ccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEeh--
Confidence 1 111111 23333321111111111222233333333222 3455665 699999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|....+|.--+..+....-.++.++. .....- +..+..+.-+.|.| .++.+|+.+..|.
T Consensus 175 -eAl~~LD~smrsQl~NL~LeLQek~G---iSyiYV-~QhlG~iKHi~D~v-iVM~EG~vvE~G~ 233 (267)
T COG4167 175 -EALASLDMSMRSQLINLMLELQEKQG---ISYIYV-TQHIGMIKHISDQV-LVMHEGEVVERGS 233 (267)
T ss_pred -hhhhhccHHHHHHHHHHHHHHHHHhC---ceEEEE-echhhHhhhhcccE-EEEecCceeecCC
Confidence 77777777555444443333332221 100011 24455677788888 8888898876543
No 349
>PLN03073 ABC transporter F family; Provisional
Probab=99.32 E-value=5.1e-13 Score=139.31 Aligned_cols=163 Identities=15% Similarity=0.186 Sum_probs=96.0
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCc-chhHHHhhccCCCCCCcceeee
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE-RFEWLCQLFKPKSAVPAFLEIH 93 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~-~l~~l~~~~~~~~~~~~~l~~~ 93 (350)
.+++..+.+|+++||+|+||||||||+++|+|. .+|.+|.|.+.+. ++.+ .++.... .+.+.
T Consensus 526 ~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gl-----------l~p~~G~I~~~~~~~igy-----v~Q~~~~-~l~~~ 588 (718)
T PLN03073 526 KNLNFGIDLDSRIAMVGPNGIGKSTILKLISGE-----------LQPSSGTVFRSAKVRMAV-----FSQHHVD-GLDLS 588 (718)
T ss_pred eccEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCceEEECCceeEEE-----Eeccccc-cCCcc
Confidence 567889999999999999999999999999999 6889999987642 1111 1111100 11111
Q ss_pred eeccc--cc-ccccCccccchHHHHHHHH---------------HHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHH
Q 018809 94 DIAGL--VR-GAHEGQGLGNSFLSHIRAV---------------DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAEL 154 (350)
Q Consensus 94 D~~g~--~~-~~~~~~~~~~~~l~~l~~~---------------d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el 154 (350)
++..+ .. ...........++..+... ..-+.+++++ .+|++++|| ||++++|....+.
T Consensus 589 ~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLD---EPT~~LD~~s~~~ 665 (718)
T PLN03073 589 SNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLD---EPSNHLDLDAVEA 665 (718)
T ss_pred hhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEc---CCCCCCCHHHHHH
Confidence 11000 00 0000000000111111000 0114456666 799999999 9999999988654
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc-ccCCC
Q 018809 155 RLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDW 206 (350)
Q Consensus 155 ~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~-~~~~~ 206 (350)
+...+ ..+...+... +|+...+..+|+++ ..|.+|++. +.+++
T Consensus 666 l~~~L-------~~~~gtvIiv-SHd~~~i~~~~drv-~~l~~G~i~~~~g~~ 709 (718)
T PLN03073 666 LIQGL-------VLFQGGVLMV-SHDEHLISGSVDEL-WVVSEGKVTPFHGTF 709 (718)
T ss_pred HHHHH-------HHcCCEEEEE-ECCHHHHHHhCCEE-EEEECCEEEEeCCCH
Confidence 43322 1111122122 49999999999999 788889876 44544
No 350
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.32 E-value=6.1e-13 Score=114.72 Aligned_cols=173 Identities=17% Similarity=0.252 Sum_probs=108.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCC-cchhHHHh-----h-----cc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD-ERFEWLCQ-----L-----FK 81 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~-~~l~~l~~-----~-----~~ 81 (350)
+-+.++..+.+|+.-+|||||||||||++.+|+|. ..|+.|.+.+.| .++..+.. . |+
T Consensus 20 Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGK-----------trp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ 88 (249)
T COG4674 20 ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGK-----------TRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQ 88 (249)
T ss_pred eeeeeEEEecCCeEEEEECCCCCCceeeeeeeccc-----------CCCCcceEEEcCchhhccCCHHHHHHhccCcccc
Confidence 55788999999999999999999999999999998 589999999998 55443222 1 22
Q ss_pred CCCCCCcceeeeeecccccccccCc--cccchH-HHHHHHHHHHHH------------------------HHhhc-CCCc
Q 018809 82 PKSAVPAFLEIHDIAGLVRGAHEGQ--GLGNSF-LSHIRAVDGIFH------------------------VLRAF-EDPD 133 (350)
Q Consensus 82 ~~~~~~~~l~~~D~~g~~~~~~~~~--~~~~~~-l~~l~~~d~~l~------------------------vv~a~-~~~~ 133 (350)
...++..+++.|+..+....+++- .+..+. ...-+..|-++. +--.+ ++|.
T Consensus 89 -~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~ 167 (249)
T COG4674 89 -KPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPK 167 (249)
T ss_pred -CCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCc
Confidence 223445677888776654433210 010000 000111121111 11123 7899
Q ss_pred eeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 134 vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
++.+| ||+.++--.+.+..-..+..+... .. + .-..|++..+.++.+++ ..|.+|..+..|+++
T Consensus 168 lLLlD---EPvAGMTd~Et~~taeLl~~la~~----hs-i-lVVEHDM~Fvr~~A~~V-TVlh~G~VL~EGsld 231 (249)
T COG4674 168 LLLLD---EPVAGMTDAETEKTAELLKSLAGK----HS-I-LVVEHDMGFVREIADKV-TVLHEGSVLAEGSLD 231 (249)
T ss_pred EEEec---CccCCCcHHHHHHHHHHHHHHhcC----ce-E-EEEeccHHHHHHhhhee-EEEeccceeecccHH
Confidence 99999 999877655532222221111110 00 0 01139999999999999 999999998887764
No 351
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.31 E-value=6.3e-13 Score=128.13 Aligned_cols=87 Identities=31% Similarity=0.329 Sum_probs=75.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc-
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA- 102 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~- 102 (350)
-.|+|||+||+|||||||.|+|...++ +++|++|+++..|...+.|. .+.++||.|+....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~-----------------~f~lIDTgGl~~~~~ 66 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR-----------------EFILIDTGGLDDGDE 66 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc-----------------eEEEEECCCCCcCCc
Confidence 479999999999999999999999988 99999999999999999874 38899999998654
Q ss_pred -ccCccccchHHHHHHHHHHHHHHHhh
Q 018809 103 -HEGQGLGNSFLSHIRAVDGIFHVLRA 128 (350)
Q Consensus 103 -~~~~~~~~~~l~~l~~~d~~l~vv~a 128 (350)
.-...+..+.+..+..||++++|+|+
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~ 93 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDG 93 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeC
Confidence 22445667788899999999998887
No 352
>PLN03130 ABC transporter C family member; Provisional
Probab=99.30 E-value=2.3e-12 Score=144.82 Aligned_cols=166 Identities=19% Similarity=0.248 Sum_probs=105.3
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~ 85 (350)
.=+.++..|++|+++||||++|||||||+++|.|. .+|.+|.|.++|.++..+. . .+.||..
T Consensus 1254 VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl-----------~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp 1322 (1622)
T PLN03130 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRI-----------VELERGRILIDGCDISKFGLMDLRKVLGIIPQAP 1322 (1622)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCc-----------CCCCCceEEECCEecccCCHHHHHhccEEECCCC
Confidence 34677889999999999999999999999999999 6899999999998764432 1 2333332
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHH----------------------------HHHHHHHhhc-CCCceee
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~----------------------------d~~l~vv~a~-~~~~vl~ 136 (350)
.-..-++.|+......... .+..+.++.+ .-.+.++||+ .+|++++
T Consensus 1323 ~LF~GTIreNLd~~~~~td-----eei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILI 1397 (1622)
T PLN03130 1323 VLFSGTVRFNLDPFNEHND-----ADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILV 1397 (1622)
T ss_pred ccccccHHHHhCcCCCCCH-----HHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 2222233333322111000 0000111110 0114567776 7999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+| ||++.+|..++..+...+....+ .+++ ..-+|.+..+.. ||+| ..|++|+++..|+
T Consensus 1398 LD---EATSaLD~~Te~~Iq~~I~~~~~-----~~Tv-I~IAHRL~tI~~-~DrI-lVLd~G~IvE~Gt 1455 (1622)
T PLN03130 1398 LD---EATAAVDVRTDALIQKTIREEFK-----SCTM-LIIAHRLNTIID-CDRI-LVLDAGRVVEFDT 1455 (1622)
T ss_pred EE---CCCCCCCHHHHHHHHHHHHHHCC-----CCEE-EEEeCChHHHHh-CCEE-EEEECCEEEEeCC
Confidence 99 99999999887555444321110 0111 112499887765 8999 8899999886654
No 353
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.30 E-value=1.4e-12 Score=113.44 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=85.7
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH--hhccCCCCCCcce
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--QLFKPKSAVPAFL 90 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~--~~~~~~~~~~~~l 90 (350)
.=.+++.++++|++++|+||||||||||+|++.+ ..|.+.+.+..-.... ..|.+ +.
T Consensus 10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---------------~~G~v~~~~~~~~~~~~~~~~~~------q~ 68 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---------------ASGKARLISFLPKFSRNKLIFID------QL 68 (176)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---------------cCCcEEECCcccccccccEEEEh------HH
Confidence 4468899999999999999999999999999863 2455555443100000 00111 11
Q ss_pred eeeeecccccc-ccc-CccccchHHHHHHHHHHHHHHHhhc-CC--CceeeecCCCCCCchhHHHHHHHHHHHHHHHHHH
Q 018809 91 EIHDIAGLVRG-AHE-GQGLGNSFLSHIRAVDGIFHVLRAF-ED--PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERR 165 (350)
Q Consensus 91 ~~~D~~g~~~~-~~~-~~~~~~~~l~~l~~~d~~l~vv~a~-~~--~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~ 165 (350)
++++..++... ... ...+..-..+++. +++++ .+ |+++++| ||++.+|....+.+...+..+.+
T Consensus 69 ~~l~~~~L~~~~~~~~~~~LSgGq~qrl~-------laral~~~~~p~llLlD---EPt~~LD~~~~~~l~~~l~~~~~- 137 (176)
T cd03238 69 QFLIDVGLGYLTLGQKLSTLSGGELQRVK-------LASELFSEPPGTLFILD---EPSTGLHQQDINQLLEVIKGLID- 137 (176)
T ss_pred HHHHHcCCCccccCCCcCcCCHHHHHHHH-------HHHHHhhCCCCCEEEEe---CCcccCCHHHHHHHHHHHHHHHh-
Confidence 23333333211 111 1111111123333 44444 48 9999999 99999999987666655433211
Q ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCc
Q 018809 166 IEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200 (350)
Q Consensus 166 ~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~ 200 (350)
....+... +|+...+ ..+|++ ..|.+|+-
T Consensus 138 ---~g~tvIiv-SH~~~~~-~~~d~i-~~l~~g~~ 166 (176)
T cd03238 138 ---LGNTVILI-EHNLDVL-SSADWI-IDFGPGSG 166 (176)
T ss_pred ---CCCEEEEE-eCCHHHH-HhCCEE-EEECCCCC
Confidence 11112122 4888776 568888 66776654
No 354
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.30 E-value=2.9e-13 Score=136.14 Aligned_cols=170 Identities=16% Similarity=0.226 Sum_probs=99.1
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-cceEEEeCCcchh------HHHh--hccCCCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-NEARVNIPDERFE------WLCQ--LFKPKSA 85 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p-~~G~i~~~~~~l~------~l~~--~~~~~~~ 85 (350)
.++++.+.+|+++||+|+||||||||+++|+|. .++ .+|.|.++|+.+. .... .|.++..
T Consensus 277 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~-----------~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 345 (490)
T PRK10938 277 HNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD-----------HPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSL 345 (490)
T ss_pred eeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC-----------CCcccCCeEEEecccCCCCCCHHHHHhhceEECHHH
Confidence 578889999999999999999999999999997 344 6899999875431 0110 1222110
Q ss_pred -C-C-cceeeeeecc--ccc--ccc---cC--ccccchHHHHHHHHH---------------HHHHHHhhc-CCCceeee
Q 018809 86 -V-P-AFLEIHDIAG--LVR--GAH---EG--QGLGNSFLSHIRAVD---------------GIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 86 -~-~-~~l~~~D~~g--~~~--~~~---~~--~~~~~~~l~~l~~~d---------------~~l~vv~a~-~~~~vl~l 137 (350)
. + ...++.+... +.. ... .. ......+++.+...+ .-+.+++++ .+|+++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllL 425 (490)
T PRK10938 346 HLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLIL 425 (490)
T ss_pred HhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0 0 0011111110 000 000 00 000111111111111 115567777 79999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHH-HHHHHHHHhhcCCcccc
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHE-LCQRVKAWLQDGKDVRL 203 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~-l~~~i~~~L~~g~~~~~ 203 (350)
| ||++++|....+.+...+..+.+. -...+... +|+...+.. +++++ .+|.+|+++..
T Consensus 426 D---EPt~gLD~~~~~~l~~~L~~l~~~---~~~tviiv-sHd~~~~~~~~~d~v-~~l~~G~i~~~ 484 (490)
T PRK10938 426 D---EPLQGLDPLNRQLVRRFVDVLISE---GETQLLFV-SHHAEDAPACITHRL-EFVPDGDIYRY 484 (490)
T ss_pred c---CccccCCHHHHHHHHHHHHHHHhc---CCcEEEEE-ecchhhhhhhhheeE-EEecCCceEEe
Confidence 9 999999999976666655433221 01112122 499999887 58888 88899987654
No 355
>PRK13409 putative ATPase RIL; Provisional
Probab=99.30 E-value=7.9e-13 Score=135.37 Aligned_cols=157 Identities=17% Similarity=0.191 Sum_probs=92.0
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEE-----------eCCcchhHHHh-h---
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-----------IPDERFEWLCQ-L--- 79 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~-----------~~~~~l~~l~~-~--- 79 (350)
..+. .+++|+++||+||||||||||+++|+|. .+|+.|.|. +.|.++..... .
T Consensus 91 ~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~-----------l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~ 158 (590)
T PRK13409 91 YGLP-IPKEGKVTGILGPNGIGKTTAVKILSGE-----------LIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNG 158 (590)
T ss_pred ecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCC-----------ccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhcc
Confidence 4455 6899999999999999999999999998 689999997 67766543211 1
Q ss_pred -----ccCCCC--CCc--ceeeeeecccccccccCccccchHHHHHHHH--------------HHHHHHHhhc-CCCcee
Q 018809 80 -----FKPKSA--VPA--FLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV--------------DGIFHVLRAF-EDPDII 135 (350)
Q Consensus 80 -----~~~~~~--~~~--~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~--------------d~~l~vv~a~-~~~~vl 135 (350)
+.++.. .+. ..++.|...... .......+++.+... -.-+.+++++ .+|+++
T Consensus 159 ~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~ll 234 (590)
T PRK13409 159 EIKVVHKPQYVDLIPKVFKGKVRELLKKVD----ERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFY 234 (590)
T ss_pred CcceeecccchhhhhhhhcchHHHHHHhhh----HHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 111100 000 001111110000 000000111111000 0014466666 799999
Q ss_pred eecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhc
Q 018809 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD 197 (350)
Q Consensus 136 ~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~ 197 (350)
++| ||++.+|....+.+...+..+. + ...+... +|++..+..++|++ .+|..
T Consensus 235 lLD---EPts~LD~~~~~~l~~~i~~l~----~-g~tvIiv-sHd~~~l~~~~D~v-~vl~~ 286 (590)
T PRK13409 235 FFD---EPTSYLDIRQRLNVARLIRELA----E-GKYVLVV-EHDLAVLDYLADNV-HIAYG 286 (590)
T ss_pred EEE---CCCCCCCHHHHHHHHHHHHHHH----C-CCEEEEE-eCCHHHHHHhCCEE-EEEeC
Confidence 999 9999999998765555443321 1 2222122 49999999999998 77764
No 356
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.29 E-value=8.2e-13 Score=137.06 Aligned_cols=173 Identities=18% Similarity=0.169 Sum_probs=105.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----H----Hh--hcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----L----CQ--LFK 81 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l----~~--~~~ 81 (350)
.-.++++.+.+|++++|+|+||||||||+++|+|. .+|++|.+.++|+++.. + .. .|.
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl-----------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v 91 (648)
T PRK10535 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCL-----------DKPTSGTYRVAGQDVATLDADALAQLRREHFGFI 91 (648)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEE
Confidence 34678889999999999999999999999999999 58999999999976432 1 01 122
Q ss_pred CCC-CCCcceeeeeeccccccc---ccC--ccccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCC
Q 018809 82 PKS-AVPAFLEIHDIAGLVRGA---HEG--QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 82 ~~~-~~~~~l~~~D~~g~~~~~---~~~--~~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~ 140 (350)
++. .....+++.|+..+.... ... ......+++.++..+. -+.+++++ .+|+++++|
T Consensus 92 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllD-- 169 (648)
T PRK10535 92 FQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILAD-- 169 (648)
T ss_pred eCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE--
Confidence 221 222223333333221100 000 0000111111111110 15677887 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
||+.++|....+.+...+..+.+ ....+... +|+..... .||++ .+|.+|++...++.
T Consensus 170 -EP~~gLD~~s~~~l~~ll~~l~~----~g~tiliv-sH~~~~~~-~~d~i-~~l~~G~i~~~g~~ 227 (648)
T PRK10535 170 -EPTGALDSHSGEEVMAILHQLRD----RGHTVIIV-THDPQVAA-QAERV-IEIRDGEIVRNPPA 227 (648)
T ss_pred -CCCCCCCHHHHHHHHHHHHHHHh----cCCEEEEE-CCCHHHHH-hCCEE-EEEECCEEEeecCc
Confidence 99999999997655554432211 11111112 48888664 69999 88899988765544
No 357
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.28 E-value=7.9e-13 Score=109.86 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=44.4
Q ss_pred cccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH
Q 018809 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW 75 (350)
Q Consensus 16 ~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~ 75 (350)
+++..+++|++++|+|+||||||||+++|+|. .+|.+|.|.+++.++..
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~-----------~~~~~G~i~~~~~~~~~ 51 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGL-----------LPPDSGSILINGKDISD 51 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHHTTS-----------SHESEEEEEETTEEGTT
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeeeccc-----------ccccccccccccccccc
Confidence 57788999999999999999999999999999 57899999999876644
No 358
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.28 E-value=2.7e-12 Score=142.69 Aligned_cols=199 Identities=14% Similarity=0.117 Sum_probs=115.3
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-HHh--hccCCC-CCCcce
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-LCQ--LFKPKS-AVPAFL 90 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-l~~--~~~~~~-~~~~~l 90 (350)
+++++.+++|+.+||+||||||||||+|+|+|... .-.|.+|.|.++|+++.. +.. .|.+|. .....+
T Consensus 780 ~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~--------~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~ 851 (1394)
T TIGR00956 780 NNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVT--------TGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTS 851 (1394)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC--------CCCcceeEEEECCEECChhhhcceeeecccccCCCCC
Confidence 67889999999999999999999999999999831 012678999999976531 111 233332 223345
Q ss_pred eeeeecccccccccCcc--------ccchHHHHHHHH---H---------------HHHHHHhhc-CCCc-eeeecCCCC
Q 018809 91 EIHDIAGLVRGAHEGQG--------LGNSFLSHIRAV---D---------------GIFHVLRAF-EDPD-IIHVDDSVD 142 (350)
Q Consensus 91 ~~~D~~g~~~~~~~~~~--------~~~~~l~~l~~~---d---------------~~l~vv~a~-~~~~-vl~ld~~~e 142 (350)
++.++..+....+.... .....++.+... | .-+.+++++ .+|+ ++++| |
T Consensus 852 Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLD---E 928 (1394)
T TIGR00956 852 TVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLD---E 928 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEc---C
Confidence 55555443211000000 001111111110 0 013455555 7897 89999 9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHH-HHHHHHHHHHHhhcC-CccccCCCChhHHHHHHHhhhh
Q 018809 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKI-EHELCQRVKAWLQDG-KDVRLGDWKAADIEILNTFQLL 220 (350)
Q Consensus 143 P~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~-~~~l~~~i~~~L~~g-~~~~~~~~t~~~~e~i~~~~~~ 220 (350)
|++++|......+...+..+.+ -...+ .-.+|+... +...+|++ .+|.+| +.++.|+..+...+. .+++..
T Consensus 929 PTsgLD~~~~~~i~~~L~~la~----~g~tv-I~t~H~~~~~~~~~~D~v-l~L~~GG~iv~~G~~~~~~~~~-~~yf~~ 1001 (1394)
T TIGR00956 929 PTSGLDSQTAWSICKLMRKLAD----HGQAI-LCTIHQPSAILFEEFDRL-LLLQKGGQTVYFGDLGENSHTI-INYFEK 1001 (1394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH----cCCEE-EEEecCCCHHHHHhcCEE-EEEcCCCEEEEECCcccccchH-HHHHHh
Confidence 9999999987666555443321 11122 112488775 45778999 888887 888887765433232 245433
Q ss_pred hc-CCcchhccc
Q 018809 221 TA-KPVVYLVNM 231 (350)
Q Consensus 221 ~~-kp~~~~~n~ 231 (350)
.. .+++--.|-
T Consensus 1002 ~G~~~~p~~~Np 1013 (1394)
T TIGR00956 1002 HGAPKCPEDANP 1013 (1394)
T ss_pred cCCCCCCCCCCH
Confidence 33 244444443
No 359
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.28 E-value=5.8e-12 Score=129.41 Aligned_cols=191 Identities=16% Similarity=0.174 Sum_probs=117.8
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcch-----hHHHhhccCCCCCCcc
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF-----EWLCQLFKPKSAVPAF 89 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l-----~~l~~~~~~~~~~~~~ 89 (350)
+++++.+++|+..||+||.|||||||+|+|+|.... --..+|.|.++|+.. ...+.+..+.......
T Consensus 47 ~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~--------~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~ 118 (613)
T KOG0061|consen 47 KGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNG--------GLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPT 118 (613)
T ss_pred eCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccC--------CCcceEEEEECCccCchhhhhheeEEEccccccccc
Confidence 789999999999999999999999999999998420 024789999999432 2222333333333445
Q ss_pred eeeeeecccccccccCcc--------ccchHH--------------------------HHHHHHHHHHHHHhhcCCCcee
Q 018809 90 LEIHDIAGLVRGAHEGQG--------LGNSFL--------------------------SHIRAVDGIFHVLRAFEDPDII 135 (350)
Q Consensus 90 l~~~D~~g~~~~~~~~~~--------~~~~~l--------------------------~~l~~~d~~l~vv~a~~~~~vl 135 (350)
+++.++.-+......... ..+..+ +++..+--+ ..+|.++
T Consensus 119 LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~El------l~~P~iL 192 (613)
T KOG0061|consen 119 LTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALEL------LTDPSIL 192 (613)
T ss_pred ccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHH------HcCCCEE
Confidence 566555444321111100 001111 222222222 3599999
Q ss_pred eecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-HHHHHHHHHHHHHHhhcCCccccCCCChhHHHHH
Q 018809 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQ-LKIEHELCQRVKAWLQDGKDVRLGDWKAADIEIL 214 (350)
Q Consensus 136 ~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~-~~~~~~l~~~i~~~L~~g~~~~~~~~t~~~~e~i 214 (350)
++| ||++++|......+...+..+.+. .+++..+ -|+ ...+-.+.|++ .+|.+|+.+|.|... +.
T Consensus 193 flD---EPTSGLDS~sA~~vv~~Lk~lA~~----grtVi~t-IHQPss~lf~lFD~l-~lLs~G~~vy~G~~~----~~- 258 (613)
T KOG0061|consen 193 FLD---EPTSGLDSFSALQVVQLLKRLARS----GRTVICT-IHQPSSELFELFDKL-LLLSEGEVVYSGSPR----EL- 258 (613)
T ss_pred Eec---CCCCCcchhhHHHHHHHHHHHHhC----CCEEEEE-EeCCcHHHHHHHhHh-hhhcCCcEEEecCHH----HH-
Confidence 999 999999998865555444333221 2222111 144 45788999999 999999999998764 21
Q ss_pred HHhhhhhcCCcchhcccch
Q 018809 215 NTFQLLTAKPVVYLVNMNE 233 (350)
Q Consensus 215 ~~~~~~~~kp~~~~~n~~~ 233 (350)
.+++....-|+|--.|..|
T Consensus 259 ~~ff~~~G~~~P~~~Npad 277 (613)
T KOG0061|consen 259 LEFFSSLGFPCPELENPAD 277 (613)
T ss_pred HHHHHhCCCCCCCcCChHH
Confidence 2355445666666666654
No 360
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.28 E-value=3.1e-12 Score=109.63 Aligned_cols=87 Identities=40% Similarity=0.744 Sum_probs=68.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccccC
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~~~ 105 (350)
.++|+|++|||||||+|+|++....++++|++|..|..|.+.+.+. ..+.++|+||+.......
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~~~~~ 65 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG----------------RSFVVADIPGLIEGASEG 65 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC----------------CeEEEEecCcccCccccc
Confidence 4799999999999999999998777788999999999998877642 258999999986544433
Q ss_pred ccccchHHHHHHHHHHHHHHHhh
Q 018809 106 QGLGNSFLSHIRAVDGIFHVLRA 128 (350)
Q Consensus 106 ~~~~~~~l~~l~~~d~~l~vv~a 128 (350)
..+...++..++.+|++++|+|+
T Consensus 66 ~~~~~~~~~~~~~~d~vi~v~D~ 88 (170)
T cd01898 66 KGLGHRFLRHIERTRLLLHVIDL 88 (170)
T ss_pred CCchHHHHHHHHhCCEEEEEEec
Confidence 34555666666677777776665
No 361
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.28 E-value=4.5e-12 Score=115.92 Aligned_cols=196 Identities=18% Similarity=0.152 Sum_probs=124.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
...+|+||+||+|||||.|-+.|.++.+ +.++.||+....|.+.-+. .|+.|+|+||+....
T Consensus 72 ~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-----------------TQlvf~DTPGlvs~~ 134 (379)
T KOG1423|consen 72 SLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-----------------TQLVFYDTPGLVSKK 134 (379)
T ss_pred EEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-----------------eEEEEecCCcccccc
Confidence 3589999999999999999999999966 9999999999999988663 479999999997543
Q ss_pred cc-C----ccccchHHHHHHHHHHHHHHHhhcC--C---CceeeecC--CCCC----CchhHHHHHHHHHH-HHHHHHH-
Q 018809 103 HE-G----QGLGNSFLSHIRAVDGIFHVLRAFE--D---PDIIHVDD--SVDP----VRDLEVISAELRLK-DIEFMER- 164 (350)
Q Consensus 103 ~~-~----~~~~~~~l~~l~~~d~~l~vv~a~~--~---~~vl~ld~--~~eP----~~~ld~~~~el~~~-~l~~l~~- 164 (350)
.. + ..+.......+..||.++.++|+.. . |.+++.-. ...| .+++|..-...++- ....+..
T Consensus 135 ~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g 214 (379)
T KOG1423|consen 135 MHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNG 214 (379)
T ss_pred hhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhcccc
Confidence 22 2 1222344567788888888888762 1 21221100 2233 23333322211111 1111110
Q ss_pred HHH----HHH-H---------------------HHhhcccccHHHHHHHHHHHHHHhhcCCcccc-CCCChhH-----HH
Q 018809 165 RIE----DVE-K---------------------SMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IE 212 (350)
Q Consensus 165 ~~~----~~~-~---------------------~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~-~~~t~~~-----~e 212 (350)
.+. ++. + ....| +.+++.++++-+.+....+.|++.++ +..|++. .|
T Consensus 215 ~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vS-aL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~e 293 (379)
T KOG1423|consen 215 ELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVS-ALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCSE 293 (379)
T ss_pred ccchhhhhHHHHhccCCcccccccccCcccceeEEEEe-cccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHHH
Confidence 010 011 0 00011 26677788888888777888998887 5566654 26
Q ss_pred HHHHh-hhhhcCCcchhcccchhhhh
Q 018809 213 ILNTF-QLLTAKPVVYLVNMNEKDYQ 237 (350)
Q Consensus 213 ~i~~~-~~~~~kp~~~~~n~~~~~~~ 237 (350)
.+|+. +....+++||.+.+....|+
T Consensus 294 ~VReklLd~~pqEVPY~lq~~i~~w~ 319 (379)
T KOG1423|consen 294 SVREKLLDHLPQEVPYNLQVRILSWK 319 (379)
T ss_pred HHHHHHHhhCccccCcceEEEEEEee
Confidence 78887 66678999999876665554
No 362
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.27 E-value=2.3e-12 Score=137.69 Aligned_cols=173 Identities=20% Similarity=0.242 Sum_probs=105.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH------HHh--hccCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LCQ--LFKPKS 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~------l~~--~~~~~~ 84 (350)
+-+.++..|++|+..|++|+|||||||+||++||. ..|++|.+.+.|..+.. ... .|-||.
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~-----------~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~ 648 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGE-----------TKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQF 648 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCC-----------ccCCcceEEEecCccccccchhhhhhhcccCCch
Confidence 45788999999999999999999999999999999 68999999998765432 111 233432
Q ss_pred C-CCcceeeeeecccc---cccccCccccchHHHHHHHHHHH-----------------HHHHhh-cCCCceeeecCCCC
Q 018809 85 A-VPAFLEIHDIAGLV---RGAHEGQGLGNSFLSHIRAVDGI-----------------FHVLRA-FEDPDIIHVDDSVD 142 (350)
Q Consensus 85 ~-~~~~l~~~D~~g~~---~~~~~~~~~~~~~l~~l~~~d~~-----------------l~vv~a-~~~~~vl~ld~~~e 142 (350)
. ....++..+..-+. ++... ..........++...+. +.++-+ .++|.+++|| |
T Consensus 649 d~l~~~lT~rEhL~~~arlrG~~~-~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LD---E 724 (885)
T KOG0059|consen 649 DALWEELTGREHLEFYARLRGLPR-SDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLD---E 724 (885)
T ss_pred hhhhhhccHHHHHHHHHHHcCCCh-hHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEec---C
Confidence 1 11122222222111 11000 00111111111110000 223333 3799999999 9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 143 P~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
|+.++|+..+..++..+..+.+. .+.+ .-++|.+++.+.+|+|+ .+|-+|+...-|..
T Consensus 725 PstGmDP~arr~lW~ii~~~~k~----g~ai-iLTSHsMeE~EaLCtR~-aImv~G~l~ciGs~ 782 (885)
T KOG0059|consen 725 PSTGLDPKARRHLWDIIARLRKN----GKAI-ILTSHSMEEAEALCTRT-AIMVIGQLRCIGSP 782 (885)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhc----CCEE-EEEcCCHHHHHHHhhhh-heeecCeeEEecCh
Confidence 99999998865544443332221 1111 11249999999999999 99999998766654
No 363
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.27 E-value=8.5e-13 Score=134.55 Aligned_cols=164 Identities=15% Similarity=0.077 Sum_probs=98.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~--~~~~~~~ 85 (350)
.=.+++..+++|++++|+|+||||||||+++|+|. .+|++|.|.++|.++.. +.. .+.+|..
T Consensus 338 ~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~-----------~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 406 (547)
T PRK10522 338 SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL-----------YQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDF 406 (547)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEECCCCCHHHHhhheEEEecCh
Confidence 34677889999999999999999999999999999 68999999999876542 111 1222221
Q ss_pred CCcceeeeee---------------ccccccccc------CccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCC
Q 018809 86 VPAFLEIHDI---------------AGLVRGAHE------GQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDP 143 (350)
Q Consensus 86 ~~~~l~~~D~---------------~g~~~~~~~------~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP 143 (350)
....-++.++ .++...... +..+..--.++ +.++|++ .+|+++++| ||
T Consensus 407 ~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qR-------l~lARal~~~~~ililD---E~ 476 (547)
T PRK10522 407 HLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKR-------LALLLALAEERDILLLD---EW 476 (547)
T ss_pred hHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHH-------HHHHHHHhcCCCEEEEE---CC
Confidence 1111112221 111100000 00111011122 3466776 799999999 99
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcccc
Q 018809 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (350)
Q Consensus 144 ~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~ 203 (350)
++.+|..++..+...+... .....+++ .-.+|.... ...+|++ ..|++|++...
T Consensus 477 ts~LD~~~~~~i~~~l~~~---~~~~~~tv-i~itH~~~~-~~~~d~i-~~l~~G~i~e~ 530 (547)
T PRK10522 477 AADQDPHFRREFYQVLLPL---LQEMGKTI-FAISHDDHY-FIHADRL-LEMRNGQLSEL 530 (547)
T ss_pred CCCCCHHHHHHHHHHHHHH---HHhCCCEE-EEEEechHH-HHhCCEE-EEEECCEEEEe
Confidence 9999998875544433211 11001111 111488754 5678988 88888987643
No 364
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.27 E-value=9.3e-13 Score=132.19 Aligned_cols=157 Identities=18% Similarity=0.232 Sum_probs=91.4
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCC-cchhHHHhhccCCCCCCcceeee
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD-ERFEWLCQLFKPKSAVPAFLEIH 93 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~-~~l~~l~~~~~~~~~~~~~l~~~ 93 (350)
.++++.+.+|++||||||||+|||||+++|+|. ..|.+|.|.+.. ..+.++.+... ......+++
T Consensus 339 ~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~-----------~~~~~G~v~~g~~v~igyf~Q~~~---~l~~~~t~~ 404 (530)
T COG0488 339 KDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGE-----------LGPLSGTVKVGETVKIGYFDQHRD---ELDPDKTVL 404 (530)
T ss_pred cCceEEecCCCEEEEECCCCCCHHHHHHHHhhh-----------cccCCceEEeCCceEEEEEEehhh---hcCccCcHH
Confidence 578889999999999999999999999999998 577899887653 22222221110 000011122
Q ss_pred eeccccccc-----------------------ccCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHH
Q 018809 94 DIAGLVRGA-----------------------HEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (350)
Q Consensus 94 D~~g~~~~~-----------------------~~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (350)
|...-.... ....+-|++ .+ +.++..+ ..|++++|| ||++++|+
T Consensus 405 d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk--~R-------l~La~ll~~~pNvLiLD---EPTNhLDi 472 (530)
T COG0488 405 EELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEK--AR-------LLLAKLLLQPPNLLLLD---EPTNHLDI 472 (530)
T ss_pred HHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHH--HH-------HHHHHHhccCCCEEEEc---CCCccCCH
Confidence 211110000 000001111 11 3333444 699999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc-ccCCCC
Q 018809 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDWK 207 (350)
Q Consensus 150 ~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~-~~~~~t 207 (350)
-.. +.++.-+..+...+..- +|+...++.+++++ ..++. ... +.|+++
T Consensus 473 ~s~-------~aLe~aL~~f~Gtvl~V-SHDr~Fl~~va~~i-~~~~~-~~~~~~g~y~ 521 (530)
T COG0488 473 ESL-------EALEEALLDFEGTVLLV-SHDRYFLDRVATRI-WLVED-KVEEFEGGYE 521 (530)
T ss_pred HHH-------HHHHHHHHhCCCeEEEE-eCCHHHHHhhcceE-EEEcC-ceeEcCCCHH
Confidence 874 33444444443333222 39999999999998 44443 332 335554
No 365
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.27 E-value=3.6e-12 Score=141.72 Aligned_cols=178 Identities=15% Similarity=0.149 Sum_probs=109.7
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh------hccCCC-CCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ------LFKPKS-AVP 87 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~------~~~~~~-~~~ 87 (350)
.++++.+++|+.++|+||||||||||+|+|+|.... ...|.+|.|.++|.++..... .|.++. ...
T Consensus 78 ~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~-------~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~ 150 (1394)
T TIGR00956 78 KPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDG-------FHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHF 150 (1394)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC-------CCCCceeEEEECCEehHHHHhhcCceeEEeccccccC
Confidence 678899999999999999999999999999998310 024689999999987643321 122222 223
Q ss_pred cceeeeeecccccccccC----ccccc---------hHHHHHHHHHH-------------------HHHHHhhc-CCCce
Q 018809 88 AFLEIHDIAGLVRGAHEG----QGLGN---------SFLSHIRAVDG-------------------IFHVLRAF-EDPDI 134 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~~~----~~~~~---------~~l~~l~~~d~-------------------~l~vv~a~-~~~~v 134 (350)
..+++.|+..+....... .+... ..++.+...+. -+.+++++ .+|++
T Consensus 151 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v 230 (1394)
T TIGR00956 151 PHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI 230 (1394)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE
Confidence 345666655443110000 00000 01111111000 03455555 78999
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccH-HHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQL-KIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 135 l~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~-~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
+++| ||++++|......+...+..+.+. ....+..+ .|+. ..+.+++|++ .+|.+|++++.|+.+
T Consensus 231 lllD---EPTsgLD~~~~~~i~~~L~~la~~---~g~tvii~-~Hq~~~~i~~l~D~v-~~L~~G~iv~~G~~~ 296 (1394)
T TIGR00956 231 QCWD---NATRGLDSATALEFIRALKTSANI---LDTTPLVA-IYQCSQDAYELFDKV-IVLYEGYQIYFGPAD 296 (1394)
T ss_pred EEEe---CCCCCcCHHHHHHHHHHHHHHHHh---cCCEEEEE-ecCCCHHHHHhhceE-EEEeCCeEEEECCHH
Confidence 9999 999999999876665554433221 11112122 3774 7888999999 889999998887643
No 366
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.27 E-value=1.5e-12 Score=132.87 Aligned_cols=160 Identities=18% Similarity=0.111 Sum_probs=95.1
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCCCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAVP 87 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~~~ 87 (350)
++++..+++|++++|+||||||||||+++|+|. .+|++|.|.++|.++..+. . .+.+|...-
T Consensus 359 ~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~l 427 (555)
T TIGR01194 359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-----------YIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHL 427 (555)
T ss_pred ccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhh
Confidence 568889999999999999999999999999999 6899999999997654321 1 112221110
Q ss_pred cceeeeee----------------cccccc---cccC----ccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCC
Q 018809 88 AFLEIHDI----------------AGLVRG---AHEG----QGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDP 143 (350)
Q Consensus 88 ~~l~~~D~----------------~g~~~~---~~~~----~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP 143 (350)
..-++.++ .++... ...+ ..+..--.++ +.++|++ .+|+++++| ||
T Consensus 428 f~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qR-------lalaRall~~~~ililD---E~ 497 (555)
T TIGR01194 428 FDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKR-------LALICAWLEDRPILLFD---EW 497 (555)
T ss_pred hhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHH-------HHHHHHHHcCCCEEEEe---CC
Confidence 00111111 111000 0000 0000000122 4566776 799999999 99
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc
Q 018809 144 VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (350)
Q Consensus 144 ~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~ 201 (350)
++++|..+++.+...+. +.+....+++.. .+|+... ...+|++ ..|++|+++
T Consensus 498 ts~LD~~~~~~i~~~l~---~~~~~~~~tiii-isH~~~~-~~~~d~i-~~l~~G~i~ 549 (555)
T TIGR01194 498 AADQDPAFKRFFYEELL---PDLKRQGKTIII-ISHDDQY-FELADQI-IKLAAGCIV 549 (555)
T ss_pred ccCCCHHHHHHHHHHHH---HHHHhCCCEEEE-EeccHHH-HHhCCEE-EEEECCEEE
Confidence 99999998765544321 111000111111 1488764 4578988 778888765
No 367
>PLN03140 ABC transporter G family member; Provisional
Probab=99.26 E-value=1.7e-12 Score=144.17 Aligned_cols=173 Identities=14% Similarity=0.196 Sum_probs=107.8
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc---ceEEEeCCcchhHHH----hhccCCC-CC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDERFEWLC----QLFKPKS-AV 86 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~---~G~i~~~~~~l~~l~----~~~~~~~-~~ 86 (350)
+++++.+++|+.++|+||||||||||+++|+|. .+|. +|.|.++|.++.... ..|.+|. ..
T Consensus 182 ~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~-----------l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~ 250 (1470)
T PLN03140 182 KDASGIIKPSRMTLLLGPPSSGKTTLLLALAGK-----------LDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVH 250 (1470)
T ss_pred cCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCC-----------CCCCCcceeEEEECCEechhhcccceeEEecccccC
Confidence 678999999999999999999999999999998 4666 899999997654321 1233332 23
Q ss_pred Ccceeeeeeccccccccc-Cc------cccc-----------h---HHHHH--------HHHHHH---------------
Q 018809 87 PAFLEIHDIAGLVRGAHE-GQ------GLGN-----------S---FLSHI--------RAVDGI--------------- 122 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~-~~------~~~~-----------~---~l~~l--------~~~d~~--------------- 122 (350)
...+++.|+..+...... +. .... . +.+.. ..+|.+
T Consensus 251 ~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg 330 (1470)
T PLN03140 251 VGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVG 330 (1470)
T ss_pred CCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeC
Confidence 335666666654311100 00 0000 0 00000 001211
Q ss_pred --------------HHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccH-HHHHH
Q 018809 123 --------------FHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQL-KIEHE 186 (350)
Q Consensus 123 --------------l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~-~~~~~ 186 (350)
+.+++++ .+|+++++| ||++++|......+...+..+.+. ...++..+ .|+. .++.+
T Consensus 331 ~~~~rglSGGerkRVsia~aL~~~p~vlllD---EPTsGLDs~t~~~i~~~Lr~la~~---~g~Tviis-~Hqp~~~i~~ 403 (1470)
T PLN03140 331 DEMIRGISGGQKKRVTTGEMIVGPTKTLFMD---EISTGLDSSTTYQIVKCLQQIVHL---TEATVLMS-LLQPAPETFD 403 (1470)
T ss_pred CccccCCCcccceeeeehhhhcCCCcEEEEe---CCCcCccHHHHHHHHHHHHHHHHh---cCCEEEEE-ecCCCHHHHH
Confidence 2233444 678899999 999999999876555544333211 11122122 2764 68889
Q ss_pred HHHHHHHHhhcCCccccCCC
Q 018809 187 LCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 187 l~~~i~~~L~~g~~~~~~~~ 206 (350)
++|++ .+|.+|++++.|+.
T Consensus 404 lfD~v-ilL~~G~ivy~G~~ 422 (1470)
T PLN03140 404 LFDDI-ILLSEGQIVYQGPR 422 (1470)
T ss_pred HhheE-EEeeCceEEEeCCH
Confidence 99999 89999999988764
No 368
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=6.7e-12 Score=122.89 Aligned_cols=165 Identities=16% Similarity=0.167 Sum_probs=99.0
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-------hccCCCCCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAVP 87 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-------~~~~~~~~~ 87 (350)
+.++++|+.|+++||+|+|||||||++|+|.+. .+ .+|.|.++|++++.+.. .+.||...-
T Consensus 369 ~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF-----------~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~L 436 (591)
T KOG0057|consen 369 KGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRF-----------FD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVL 436 (591)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHHHH-----------hc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccc
Confidence 678999999999999999999999999999999 46 99999999998765422 245554322
Q ss_pred cceeeeeecccccccccCccccchHHHHHHH---HHH-------------------------HHHHHhhc-CCCceeeec
Q 018809 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA---VDG-------------------------IFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~---~d~-------------------------~l~vv~a~-~~~~vl~ld 138 (350)
+.-+++.+...+...... ....+..+. .|. -+.++||+ .||.++++|
T Consensus 437 FndTIl~NI~YGn~sas~----eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~D 512 (591)
T KOG0057|consen 437 FNDTILYNIKYGNPSASD----EEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLD 512 (591)
T ss_pred cchhHHHHhhcCCCCcCH----HHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEec
Confidence 222222222222110000 000000000 011 14577777 899999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
||++++|-.++..+...+.. ... .+++ .--.|++.. ..-||+| .+|++|+....|+.
T Consensus 513 ---EaTS~LD~~TE~~i~~~i~~---~~~--~rTv-I~IvH~l~l-l~~~DkI-~~l~nG~v~e~gth 569 (591)
T KOG0057|consen 513 ---EATSALDSETEREILDMIMD---VMS--GRTV-IMIVHRLDL-LKDFDKI-IVLDNGTVKEYGTH 569 (591)
T ss_pred ---CcccccchhhHHHHHHHHHH---hcC--CCeE-EEEEecchh-HhcCCEE-EEEECCeeEEeccH
Confidence 99999999886333332211 000 0000 000276643 3557777 78888877655543
No 369
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.26 E-value=6.2e-12 Score=141.21 Aligned_cols=165 Identities=19% Similarity=0.197 Sum_probs=103.7
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~ 85 (350)
.=++++..+++|+++||||++|||||||+++|.|. .+|++|.|.++|.++..+. . .+.||..
T Consensus 1301 vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl-----------~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp 1369 (1522)
T TIGR00957 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI-----------NESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDP 1369 (1522)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------ccCCCCeEEECCEEccccCHHHHHhcCeEECCCC
Confidence 34678889999999999999999999999999999 6899999999998765432 1 2333332
Q ss_pred CCcceeeeeecccccccc---------------------c---------CccccchHHHHHHHHHHHHHHHhhc-CCCce
Q 018809 86 VPAFLEIHDIAGLVRGAH---------------------E---------GQGLGNSFLSHIRAVDGIFHVLRAF-EDPDI 134 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~---------------------~---------~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~v 134 (350)
.-..-++.++........ . |..+..--.++ +.++||+ .+|++
T Consensus 1370 ~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQr-------l~LARALLr~~~I 1442 (1522)
T TIGR00957 1370 VLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQL-------VCLARALLRKTKI 1442 (1522)
T ss_pred cccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHH-------HHHHHHHHcCCCE
Confidence 222223333322100000 0 00000000122 4566776 79999
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 135 l~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
+++| ||++.+|..++..+...+... .+ .+++ ..-+|.+..+.. +|+| ..|++|+++..|+.
T Consensus 1443 LiLD---EaTSalD~~Te~~Iq~~l~~~---~~--~~Tv-I~IAHRl~ti~~-~DrI-lVld~G~IvE~G~~ 1503 (1522)
T TIGR00957 1443 LVLD---EATAAVDLETDNLIQSTIRTQ---FE--DCTV-LTIAHRLNTIMD-YTRV-IVLDKGEVAEFGAP 1503 (1522)
T ss_pred EEEE---CCcccCCHHHHHHHHHHHHHH---cC--CCEE-EEEecCHHHHHh-CCEE-EEEECCEEEEECCH
Confidence 9999 999999998875554443211 10 0111 112488876654 7999 88999998866653
No 370
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.25 E-value=3e-12 Score=126.90 Aligned_cols=174 Identities=21% Similarity=0.265 Sum_probs=107.4
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-------------
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ------------- 78 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~------------- 78 (350)
+.-+.+++++.+|+++||||.+||||||+.++|.|+.. +.. ....|.|.++|+++..+..
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~------~~~-~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~ 95 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP------EGG-RITSGEVILDGRDLLGLSEREMRKLRGKRIAM 95 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCC------CCC-cccceEEEECCcchhcCCHHHHHHhccccEEE
Confidence 45688999999999999999999999999999999941 000 2248999999875432221
Q ss_pred hccCCC-CCCcce--------------------------eeeeeccccccccc---CccccchHHHHHHHHHHHHHHHhh
Q 018809 79 LFKPKS-AVPAFL--------------------------EIHDIAGLVRGAHE---GQGLGNSFLSHIRAVDGIFHVLRA 128 (350)
Q Consensus 79 ~~~~~~-~~~~~l--------------------------~~~D~~g~~~~~~~---~~~~~~~~l~~l~~~d~~l~vv~a 128 (350)
+||... .....+ ++++.+|+...... ...+..-..++ +.++.|
T Consensus 96 i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR-------v~iAmA 168 (539)
T COG1123 96 IFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR-------VMIAMA 168 (539)
T ss_pred EecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH-------HHHHHH
Confidence 122110 000000 11111111111000 00000000111 234555
Q ss_pred c-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 129 F-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 129 ~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
+ .+|++++.| ||++.+|+..+..++..+..+.+.. ...+..- +|++.-+..+|||+ .+|..|+++-.|+.+
T Consensus 169 La~~P~LLIaD---EPTTaLDvt~q~qIL~llk~l~~e~---g~a~l~I-THDl~Vva~~aDrv-~Vm~~G~iVE~G~~~ 240 (539)
T COG1123 169 LALKPKLLIAD---EPTTALDVTTQAQILDLLKDLQREL---GMAVLFI-THDLGVVAELADRV-VVMYKGEIVETGPTE 240 (539)
T ss_pred HhCCCCEEEEC---CCccccCHHHHHHHHHHHHHHHHHc---CcEEEEE-cCCHHHHHHhcCeE-EEEECCEEEEecCHH
Confidence 5 699999999 9999999999877777765554332 1111112 49999999999999 999999988766543
No 371
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.25 E-value=2.5e-12 Score=124.35 Aligned_cols=94 Identities=27% Similarity=0.314 Sum_probs=80.0
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
.++.|..++|+|+||+|||||||+|++.+.++ ++.|+||++-....+.++|. .+.++||+|+
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~-----------------pv~l~DTAGi 275 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGI-----------------PVRLVDTAGI 275 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCE-----------------EEEEEecCCc
Confidence 46899999999999999999999999999988 99999999999999999985 3889999999
Q ss_pred ccccccCcccc-chHHHHHHHHHHHHHHHhhcC
Q 018809 99 VRGAHEGQGLG-NSFLSHIRAVDGIFHVLRAFE 130 (350)
Q Consensus 99 ~~~~~~~~~~~-~~~l~~l~~~d~~l~vv~a~~ 130 (350)
-.....-+..| ++..+.++.||.+++|+|+..
T Consensus 276 Ret~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~ 308 (454)
T COG0486 276 RETDDVVERIGIERAKKAIEEADLVLFVLDASQ 308 (454)
T ss_pred ccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCC
Confidence 75544322222 456788899999999999875
No 372
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.9e-11 Score=105.02 Aligned_cols=48 Identities=23% Similarity=0.336 Sum_probs=43.8
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcch
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l 73 (350)
..+++.+.+|+.+-|.||||+|||||+++|+|+ ..|.+|.|.+.|..+
T Consensus 19 ~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGL-----------l~p~~G~v~~~~~~i 66 (209)
T COG4133 19 SDLSFTLNAGEALQITGPNGAGKTTLLRILAGL-----------LRPDAGEVYWQGEPI 66 (209)
T ss_pred cceeEEEcCCCEEEEECCCCCcHHHHHHHHHcc-----------cCCCCCeEEecCCCC
Confidence 457788999999999999999999999999999 799999999987654
No 373
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.4e-11 Score=124.39 Aligned_cols=166 Identities=14% Similarity=0.203 Sum_probs=106.5
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-------hccCCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-------~~~~~~~~ 86 (350)
-++++.++++|+.++||||+|+||||+.+.|.+. .+|++|.|.++|.++..+.- .+..|..+
T Consensus 484 lk~lsfti~pGe~vALVGPSGsGKSTiasLL~rf-----------Y~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPv 552 (716)
T KOG0058|consen 484 LKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRF-----------YDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPV 552 (716)
T ss_pred hcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHh-----------cCCCCCeEEECCeehhhcCHHHHHHHeeeeeccce
Confidence 3678999999999999999999999999999999 59999999999988755322 12233333
Q ss_pred CcceeeeeecccccccccCccccchHHHHHHH--HHH-H-------------------------HHHHhhc-CCCceeee
Q 018809 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA--VDG-I-------------------------FHVLRAF-EDPDIIHV 137 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~--~d~-~-------------------------l~vv~a~-~~~~vl~l 137 (350)
-+.-++.|+..++...... ....+..+. |+- + +.++||+ .+|.|++|
T Consensus 553 LFs~sI~eNI~YG~~~~t~----e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLIL 628 (716)
T KOG0058|consen 553 LFSGSIRENIAYGLDNATD----EEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLIL 628 (716)
T ss_pred eecccHHHHHhcCCCCCCH----HHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEE
Confidence 3334556665554331111 111111111 111 1 5577887 89999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| |.++.+|...+.++...+..+-+. +++ ..-+|.+.-+ +-.|+| .++++|+....|+
T Consensus 629 D---EATSALDaeSE~lVq~aL~~~~~~-----rTV-lvIAHRLSTV-~~Ad~I-vvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 629 D---EATSALDAESEYLVQEALDRLMQG-----RTV-LVIAHRLSTV-RHADQI-VVIDKGRVVEMGT 685 (716)
T ss_pred e---chhhhcchhhHHHHHHHHHHhhcC-----CeE-EEEehhhhHh-hhccEE-EEEcCCeEEeccc
Confidence 9 999999998876665554332221 111 1113666544 334566 7788888765553
No 374
>PTZ00243 ABC transporter; Provisional
Probab=99.24 E-value=7.1e-12 Score=140.69 Aligned_cols=166 Identities=15% Similarity=0.194 Sum_probs=104.3
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~~ 86 (350)
=++++..|++|+++||||++|||||||+++|.|. .+|++|.|.++|.++..+. . .+.||...
T Consensus 1326 L~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl-----------~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~ 1394 (1560)
T PTZ00243 1326 LRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRM-----------VEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPV 1394 (1560)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEEcccCCHHHHHhcceEECCCCc
Confidence 3568889999999999999999999999999999 6899999999998765422 1 23344322
Q ss_pred CcceeeeeecccccccccCccccchHHHHHHHH----------------------------HHHHHHHhhc-CC-Cceee
Q 018809 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-ED-PDIIH 136 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~----------------------------d~~l~vv~a~-~~-~~vl~ 136 (350)
-+.-++.++......... .+..+.++.+ --.+.++||+ .+ +.+++
T Consensus 1395 LF~gTIreNIdp~~~~sd-----eeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILl 1469 (1560)
T PTZ00243 1395 LFDGTVRQNVDPFLEASS-----AEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFIL 1469 (1560)
T ss_pred cccccHHHHhCcccCCCH-----HHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 222233333321110000 0011111110 1125677777 54 89999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
|| ||++.+|..++..+...+... .+ ..++ ..-+|.+..+ .-||+| .+|++|+++..|+.
T Consensus 1470 LD---EATSaLD~~te~~Iq~~L~~~---~~--~~Tv-I~IAHRl~ti-~~~DrI-lVLd~G~VvE~Gt~ 1528 (1560)
T PTZ00243 1470 MD---EATANIDPALDRQIQATVMSA---FS--AYTV-ITIAHRLHTV-AQYDKI-IVMDHGAVAEMGSP 1528 (1560)
T ss_pred Ee---CCCccCCHHHHHHHHHHHHHH---CC--CCEE-EEEeccHHHH-HhCCEE-EEEECCEEEEECCH
Confidence 99 999999998876554443211 00 0111 1124888765 458999 88999998866653
No 375
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.24 E-value=9e-12 Score=118.03 Aligned_cols=174 Identities=21% Similarity=0.300 Sum_probs=107.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh------------hc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ------------LF 80 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~------------~~ 80 (350)
+-+.++.++++|+.+||||.+|||||||=.+|+++ ++ ..|.|.+.|+++..+.. +|
T Consensus 302 AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL-----------~~-s~G~I~F~G~~i~~~~~~~mrplR~~mQvVF 369 (534)
T COG4172 302 AVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL-----------IP-SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVF 369 (534)
T ss_pred EeccceeEecCCCeEEEEecCCCCcchHHHHHHhh-----------cC-cCceEEECCccccccChhhhhhhhhhceEEE
Confidence 45788999999999999999999999999999998 34 45999999988754322 11
Q ss_pred cC-CCCCCcceeeeeeccccccccc----CccccchHHHHHHHHHHH------------------HHHHhhc-CCCceee
Q 018809 81 KP-KSAVPAFLEIHDIAGLVRGAHE----GQGLGNSFLSHIRAVDGI------------------FHVLRAF-EDPDIIH 136 (350)
Q Consensus 81 ~~-~~~~~~~l~~~D~~g~~~~~~~----~~~~~~~~l~~l~~~d~~------------------l~vv~a~-~~~~vl~ 136 (350)
+. .......+++-+..+-+-.-+. ......+....++.+.+= +.++||+ -+|.+++
T Consensus 370 QDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~ 449 (534)
T COG4172 370 QDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELIL 449 (534)
T ss_pred eCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEE
Confidence 11 1111112222222111100010 000111111111111100 4566666 6999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
+| ||++.+|.--+..+...+..++++.+ + ..+.. +|++.-+..+|+++ ..|.+|+++..|+.
T Consensus 450 LD---EPTSALD~SVQaQvv~LLr~LQ~k~~-L-sYLFI--SHDL~VvrAl~~~v-iVm~~GkiVE~G~~ 511 (534)
T COG4172 450 LD---EPTSALDRSVQAQVLDLLRDLQQKHG-L-SYLFI--SHDLAVVRALCHRV-IVMRDGKIVEQGPT 511 (534)
T ss_pred ec---CCchHhhHHHHHHHHHHHHHHHHHhC-C-eEEEE--eccHHHHHHhhceE-EEEeCCEEeeeCCH
Confidence 99 99999998766555555554444321 0 11112 39999999999999 99999999877764
No 376
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.23 E-value=5.8e-12 Score=126.63 Aligned_cols=145 Identities=26% Similarity=0.298 Sum_probs=94.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccc--
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH-- 103 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~-- 103 (350)
.++++|.||+|||||||+|||.+..++|+|+.|.+...|.....|. .++++|+||.+.-..
T Consensus 5 ~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~-----------------~i~ivDLPG~YSL~~~S 67 (653)
T COG0370 5 TVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH-----------------EIEIVDLPGTYSLTAYS 67 (653)
T ss_pred eEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc-----------------eEEEEeCCCcCCCCCCC
Confidence 4999999999999999999999999999999999999999998874 489999999974332
Q ss_pred cCccccchHHHHHHHHHHHHHHHhhc---------------CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 018809 104 EGQGLGNSFLSHIRAVDGIFHVLRAF---------------EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIED 168 (350)
Q Consensus 104 ~~~~~~~~~l~~l~~~d~~l~vv~a~---------------~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~ 168 (350)
..+...++++.. ...|++++|+||. +-|-++.+ +-+|...+.-+.-|.+.+++.+.-
T Consensus 68 ~DE~Var~~ll~-~~~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaL-------Nm~D~A~~~Gi~ID~~~L~~~LGv 139 (653)
T COG0370 68 EDEKVARDFLLE-GKPDLIVNVVDATNLERNLYLTLQLLELGIPMILAL-------NMIDEAKKRGIRIDIEKLSKLLGV 139 (653)
T ss_pred chHHHHHHHHhc-CCCCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEe-------ccHhhHHhcCCcccHHHHHHHhCC
Confidence 223333343321 3458888888874 11212211 234555544444454445444320
Q ss_pred HHHHHhhcccccHHHHHHHHHHHHHHhhcC
Q 018809 169 VEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (350)
Q Consensus 169 ~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g 198 (350)
..++.+ +.....++++.+++...-+..
T Consensus 140 --PVv~tv-A~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 140 --PVVPTV-AKRGEGLEELKRAIIELAESK 166 (653)
T ss_pred --CEEEEE-eecCCCHHHHHHHHHHhcccc
Confidence 111112 255666888888884444433
No 377
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.23 E-value=2e-12 Score=104.42 Aligned_cols=61 Identities=33% Similarity=0.511 Sum_probs=51.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~-~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~ 103 (350)
+|+|+|++|+|||||+|+|+|... .+++.|++|..+..+.+.+++. .+.++|+||+.....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~~~~vDtpG~~~~~~ 62 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK-----------------KFILVDTPGINDGES 62 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE-----------------EEEEEESSSCSSSSH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee-----------------eEEEEeCCCCcccch
Confidence 589999999999999999999754 4589999999998888877653 468999999876543
No 378
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.22 E-value=2.5e-12 Score=143.29 Aligned_cols=180 Identities=15% Similarity=0.146 Sum_probs=114.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-C---------------------------------------
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-E--------------------------------------- 52 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~-~--------------------------------------- 52 (350)
-=+.++..+++|+++||||++|||||||+++|.|..... +
T Consensus 1183 vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1262 (1466)
T PTZ00265 1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTK 1262 (1466)
T ss_pred cccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccc
Confidence 345678999999999999999999999999999997541 0
Q ss_pred ---CCCccccCCcceEEEeCCcchhHHH-----h--hccCCCCCCcceeeeeecccccccccCccccchHHHHHHHHH--
Q 018809 53 ---NFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD-- 120 (350)
Q Consensus 53 ---~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d-- 120 (350)
.-+-+|..|++|.|.++|.++..+. . .|.+|...-+..++.|+..++...... .++.+.++.+.
T Consensus 1263 ~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~----eeI~~A~k~A~l~ 1338 (1466)
T PTZ00265 1263 EGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATR----EDVKRACKFAAID 1338 (1466)
T ss_pred ccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCH----HHHHHHHHHcCCH
Confidence 1133456678999999998765432 1 244555444456666666655321100 11111111111
Q ss_pred -HH-------------------------HHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018809 121 -GI-------------------------FHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM 173 (350)
Q Consensus 121 -~~-------------------------l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~ 173 (350)
.+ +.++||+ .+|++++|| ||++.+|..++..+...+..+.. .-.+++
T Consensus 1339 ~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLD---EaTSaLD~~sE~~I~~~L~~~~~---~~~~Tv 1412 (1466)
T PTZ00265 1339 EFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLD---EATSSLDSNSEKLIEKTIVDIKD---KADKTI 1412 (1466)
T ss_pred HHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe---CcccccCHHHHHHHHHHHHHHhc---cCCCEE
Confidence 11 5577887 899999999 99999999987666555432210 001111
Q ss_pred hhcccccHHHHHHHHHHHHHHhhc----CCcc-ccCC
Q 018809 174 KRSNDKQLKIEHELCQRVKAWLQD----GKDV-RLGD 205 (350)
Q Consensus 174 ~~~~~h~~~~~~~l~~~i~~~L~~----g~~~-~~~~ 205 (350)
.-.+|.+..+ ..+|+| ..|++ |+++ ..|+
T Consensus 1413 -IiIaHRlsti-~~aD~I-vvl~~~~~~G~iv~e~Gt 1446 (1466)
T PTZ00265 1413 -ITIAHRIASI-KRSDKI-VVFNNPDRTGSFVQAHGT 1446 (1466)
T ss_pred -EEEechHHHH-HhCCEE-EEEeCCCCCCCEEEEecC
Confidence 1124888665 458998 88888 7755 3454
No 379
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.20 E-value=7.6e-12 Score=107.60 Aligned_cols=84 Identities=54% Similarity=0.911 Sum_probs=66.5
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeC-CcchhHHHhhccCCCCCCcceeeeeecccccccccCcc
Q 018809 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQG 107 (350)
Q Consensus 29 liG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~-~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~ 107 (350)
|+|+||||||||+|+|+|....++++|++|..|+.|.+.++ +. .+.++|+||+.......+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~-----------------~~~i~DtpG~~~~~~~~~~ 63 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGA-----------------RIQVADIPGLIEGASEGRG 63 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCC-----------------eEEEEeccccchhhhcCCC
Confidence 58999999999999999987767899999999999988776 42 4789999998754444444
Q ss_pred ccchHHHHHHHHHHHHHHHhhc
Q 018809 108 LGNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 108 ~~~~~l~~l~~~d~~l~vv~a~ 129 (350)
+...+...++.+|++++|+|+.
T Consensus 64 ~~~~~~~~~~~~d~ii~v~d~~ 85 (176)
T cd01881 64 LGNQFLAHIRRADAILHVVDAS 85 (176)
T ss_pred ccHHHHHHHhccCEEEEEEecc
Confidence 5556666677777777776663
No 380
>PLN03140 ABC transporter G family member; Provisional
Probab=99.19 E-value=1e-11 Score=138.19 Aligned_cols=176 Identities=13% Similarity=0.186 Sum_probs=106.1
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH--HHh--hccCCC-CCCcc
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--LCQ--LFKPKS-AVPAF 89 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~--l~~--~~~~~~-~~~~~ 89 (350)
+++++.+++|+.++|+||||||||||+|+|+|... ..+.+|.|.++|..... ... .|.+|. .....
T Consensus 897 ~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~---------~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~ 967 (1470)
T PLN03140 897 REVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---------GGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQ 967 (1470)
T ss_pred eCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC---------CCcccceEEECCccCChHHhhhheEEEccccccCCC
Confidence 67899999999999999999999999999999831 11467999998865432 111 233332 22334
Q ss_pred eeeeeeccccccccc--C---cc---ccchHHHHHHH---HHH----------------HHHHHhhc-CCCceeeecCCC
Q 018809 90 LEIHDIAGLVRGAHE--G---QG---LGNSFLSHIRA---VDG----------------IFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 90 l~~~D~~g~~~~~~~--~---~~---~~~~~l~~l~~---~d~----------------~l~vv~a~-~~~~vl~ld~~~ 141 (350)
+++.|+..+...... . .. .....++.+.. .|. -+.+++++ .+|+++++|
T Consensus 968 lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LD--- 1044 (1470)
T PLN03140 968 VTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMD--- 1044 (1470)
T ss_pred CcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEe---
Confidence 555555433210000 0 00 00111111110 010 13455555 799999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHH-HHHHHHHHHHHHhhc-CCccccCCCCh
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK-IEHELCQRVKAWLQD-GKDVRLGDWKA 208 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~-~~~~l~~~i~~~L~~-g~~~~~~~~t~ 208 (350)
||++++|......+...+..+.+ ....+... +|+.. .+.+++|++ .+|.+ |+.++.|+..+
T Consensus 1045 EPTsgLD~~~a~~v~~~L~~l~~----~g~tVI~t-~Hq~~~~i~~~~D~v-llL~~gG~~v~~G~~~~ 1107 (1470)
T PLN03140 1045 EPTSGLDARAAAIVMRTVRNTVD----TGRTVVCT-IHQPSIDIFEAFDEL-LLMKRGGQVIYSGPLGR 1107 (1470)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH----CCCEEEEE-eCCCCHHHHHhCCEE-EEEcCCCEEEEECCccc
Confidence 99999999987666555443321 11122112 38876 567899999 78876 78888877653
No 381
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.17 E-value=9.5e-11 Score=100.06 Aligned_cols=169 Identities=17% Similarity=0.285 Sum_probs=99.8
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchh--------------------
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-------------------- 74 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~-------------------- 74 (350)
+.++.+-+.|+.|+|||.+|||||||++|+.=+ -.|..|.|.++|+.+.
T Consensus 23 KGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~L-----------E~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~ 91 (256)
T COG4598 23 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFL-----------EKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL 91 (256)
T ss_pred cceeeecCCCCEEEEecCCCCchhHHHHHHHhh-----------cCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence 566777889999999999999999999999988 4899999999886431
Q ss_pred --HHHhhccCCCCCCcceeeeeeccc----ccccccC--ccccchHHHHHHHHHHH--------------HHHHhhc-CC
Q 018809 75 --WLCQLFKPKSAVPAFLEIHDIAGL----VRGAHEG--QGLGNSFLSHIRAVDGI--------------FHVLRAF-ED 131 (350)
Q Consensus 75 --~l~~~~~~~~~~~~~l~~~D~~g~----~~~~~~~--~~~~~~~l~~l~~~d~~--------------l~vv~a~-~~ 131 (350)
.+...|+.-+ ...++++++++-- .-+..+. ......+++.+..++.- ..++||+ ..
T Consensus 92 Rs~L~mVFQ~FN-LWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLame 170 (256)
T COG4598 92 RTRLGMVFQHFN-LWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAME 170 (256)
T ss_pred HHHhhHhhhhcc-hhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcC
Confidence 1222333222 2234444443211 1111110 01112222222222211 4577888 79
Q ss_pred CceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 132 PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 132 ~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
|+++..| ||++.+|+.---..+..+.. +.+-.++. .-.+|.+.....+.+.+ .+|.+|.+-..|
T Consensus 171 P~vmLFD---EPTSALDPElVgEVLkv~~~----LAeEgrTM-v~VTHEM~FAR~Vss~v-~fLh~G~iEE~G 234 (256)
T COG4598 171 PEVMLFD---EPTSALDPELVGEVLKVMQD----LAEEGRTM-VVVTHEMGFARDVSSHV-IFLHQGKIEEEG 234 (256)
T ss_pred CceEeec---CCcccCCHHHHHHHHHHHHH----HHHhCCeE-EEEeeehhHHHhhhhhe-EEeecceecccC
Confidence 9999999 99998887442122222211 11111111 11249999999999998 888888654333
No 382
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.17 E-value=3.4e-11 Score=111.57 Aligned_cols=64 Identities=27% Similarity=0.348 Sum_probs=56.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
..-.+.|.|+||+|||||+++||+.+.++++|||||..-+-|.....+ ..+|++||||+...+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~-----------------~R~QvIDTPGlLDRP 229 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY-----------------LRIQVIDTPGLLDRP 229 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC-----------------ceEEEecCCcccCCC
Confidence 345788999999999999999999999999999999999999988764 358999999998655
Q ss_pred c
Q 018809 103 H 103 (350)
Q Consensus 103 ~ 103 (350)
-
T Consensus 230 l 230 (346)
T COG1084 230 L 230 (346)
T ss_pred h
Confidence 3
No 383
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.15 E-value=1.5e-11 Score=137.19 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=44.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeC-Ccch
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP-DERF 73 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~-~~~l 73 (350)
.-.+++..+++|+++||+|+||||||||+++|+|. .+|++|.|.++ |.++
T Consensus 400 vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl-----------~~p~~G~I~i~~g~~i 450 (1466)
T PTZ00265 400 IYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL-----------YDPTEGDIIINDSHNL 450 (1466)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHh-----------ccCCCCeEEEeCCcch
Confidence 34678889999999999999999999999999999 68999999994 5554
No 384
>PLN03073 ABC transporter F family; Provisional
Probab=99.15 E-value=1.4e-11 Score=128.72 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=52.1
Q ss_pred HHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc
Q 018809 123 FHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (350)
Q Consensus 123 l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~ 201 (350)
+.+++++ .+|++++|| ||++.+|....+.+...+ .++...+... +|+...+..+|+++ .+|.+|++.
T Consensus 353 v~LA~aL~~~p~lLlLD---EPt~~LD~~~~~~l~~~L-------~~~~~tviiv-sHd~~~l~~~~d~i-~~l~~g~i~ 420 (718)
T PLN03073 353 IALARALFIEPDLLLLD---EPTNHLDLHAVLWLETYL-------LKWPKTFIVV-SHAREFLNTVVTDI-LHLHGQKLV 420 (718)
T ss_pred HHHHHHHhcCCCEEEEE---CCCCCCCHHHHHHHHHHH-------HHcCCEEEEE-ECCHHHHHHhCCEE-EEEECCEEE
Confidence 4566666 799999999 999999998864443332 2222222222 49999999999999 889999885
Q ss_pred -ccCCCC
Q 018809 202 -RLGDWK 207 (350)
Q Consensus 202 -~~~~~t 207 (350)
+.++++
T Consensus 421 ~~~g~~~ 427 (718)
T PLN03073 421 TYKGDYD 427 (718)
T ss_pred EeCCCHH
Confidence 456554
No 385
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.9e-10 Score=101.84 Aligned_cols=52 Identities=21% Similarity=0.107 Sum_probs=46.2
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW 75 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~ 75 (350)
+.++..|+.|++.+|+||||||||||.++|+|... .+++.|.|.++|+++..
T Consensus 21 kgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~---------Y~Vt~G~I~~~GedI~~ 72 (251)
T COG0396 21 KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK---------YEVTEGEILFDGEDILE 72 (251)
T ss_pred cCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC---------ceEecceEEECCccccc
Confidence 56788899999999999999999999999999842 57889999999987644
No 386
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.14 E-value=4.6e-11 Score=133.97 Aligned_cols=165 Identities=13% Similarity=0.207 Sum_probs=101.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~ 85 (350)
.=++++..|++|+++||+|++|||||||+++|.|. .+ .+|.|.++|.++..+. . .+.||..
T Consensus 1234 vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl-----------~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp 1301 (1490)
T TIGR01271 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRL-----------LS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKV 1301 (1490)
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhh-----------cC-CCcEEEECCEEcccCCHHHHHhceEEEeCCC
Confidence 34677889999999999999999999999999999 34 6899999998764322 1 2334432
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHH----------------------------HHHHHHHHhhc-CCCceee
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA----------------------------VDGIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~----------------------------~d~~l~vv~a~-~~~~vl~ 136 (350)
.-..-++.++........ . .+..+.++. -.-.+.++||+ .+++|++
T Consensus 1302 ~LF~GTIR~NLdp~~~~t-d----eei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILl 1376 (1490)
T TIGR01271 1302 FIFSGTFRKNLDPYEQWS-D----EEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILL 1376 (1490)
T ss_pred ccCccCHHHHhCcccCCC-H----HHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEE
Confidence 222223333321110000 0 000000000 01124567777 7999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|| ||++.+|..++..+...+... .. ..++ .-.+|.+..+.. +|+| ..|++|+++..|+
T Consensus 1377 LD---EaTS~lD~~Te~~I~~~L~~~---~~--~~Tv-I~IaHRl~ti~~-~DrI-lvL~~G~ivE~g~ 1434 (1490)
T TIGR01271 1377 LD---EPSAHLDPVTLQIIRKTLKQS---FS--NCTV-ILSEHRVEALLE-CQQF-LVIEGSSVKQYDS 1434 (1490)
T ss_pred Ee---CCcccCCHHHHHHHHHHHHHH---cC--CCEE-EEEecCHHHHHh-CCEE-EEEECCEEEEeCC
Confidence 99 999999998865554443211 10 0111 112498877654 8999 8899999876554
No 387
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.13 E-value=1e-10 Score=113.73 Aligned_cols=164 Identities=20% Similarity=0.239 Sum_probs=102.4
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-------hccCCC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKS 84 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-------~~~~~~ 84 (350)
|--..+++++.+|+.+|||||+|||||||.++|+|. ..|.+|.|.++|.+++++.. .|-||
T Consensus 350 pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~-----------w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQ- 417 (580)
T COG4618 350 PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI-----------WPPTSGSVRLDGADLRQWDREQLGRHIGYLPQ- 417 (580)
T ss_pred cceecceeEecCCceEEEECCCCccHHHHHHHHHcc-----------cccCCCcEEecchhhhcCCHHHhccccCcCcc-
Confidence 344678899999999999999999999999999999 58999999999977654322 13332
Q ss_pred CCCcceeeee-----ec-ccccccccCccccchHHHHHHHHH---HH-------------------------HHHHhhc-
Q 018809 85 AVPAFLEIHD-----IA-GLVRGAHEGQGLGNSFLSHIRAVD---GI-------------------------FHVLRAF- 129 (350)
Q Consensus 85 ~~~~~l~~~D-----~~-g~~~~~~~~~~~~~~~l~~l~~~d---~~-------------------------l~vv~a~- 129 (350)
.++++| +. -+.... -..+..+..+.++ ++ +.++||+
T Consensus 418 ----dVeLF~GTIaeNIaRf~~~~-----d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlY 488 (580)
T COG4618 418 ----DVELFDGTIAENIARFGEEA-----DPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALY 488 (580)
T ss_pred ----cceecCCcHHHHHHhccccC-----CHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHc
Confidence 222221 10 000000 0011111111111 11 4577888
Q ss_pred CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 130 EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 130 ~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
++|.++.|| ||-+++|-.-+.-+...+..++++ ..++ .-.+|.. .+...+|+| -+|++|.+...|+-
T Consensus 489 G~P~lvVLD---EPNsNLD~~GE~AL~~Ai~~~k~r----G~~v-vviaHRP-s~L~~~Dki-lvl~~G~~~~FG~r 555 (580)
T COG4618 489 GDPFLVVLD---EPNSNLDSEGEAALAAAILAAKAR----GGTV-VVIAHRP-SALASVDKI-LVLQDGRIAAFGPR 555 (580)
T ss_pred CCCcEEEec---CCCCCcchhHHHHHHHHHHHHHHc----CCEE-EEEecCH-HHHhhccee-eeecCChHHhcCCH
Confidence 899999999 999999988764444433322211 0000 0013644 567888999 89999988766653
No 388
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.11 E-value=3.4e-11 Score=135.36 Aligned_cols=162 Identities=16% Similarity=0.210 Sum_probs=99.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceee
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~ 92 (350)
.=.+++.++++|+.++|+|+||||||||+++|+|. .+|..|.|.++|. +.+ .+|...-...++
T Consensus 653 ~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~-----------~~~~~G~i~~~g~-i~y-----v~Q~~~l~~~Ti 715 (1522)
T TIGR00957 653 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE-----------MDKVEGHVHMKGS-VAY-----VPQQAWIQNDSL 715 (1522)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CccCCcEEEECCE-EEE-----EcCCccccCCcH
Confidence 34677889999999999999999999999999999 6899999998862 211 111111111233
Q ss_pred eeecccccccc------------------------------cCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCC
Q 018809 93 HDIAGLVRGAH------------------------------EGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 93 ~D~~g~~~~~~------------------------------~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
.|+..++.... .+..+..-..++ +.++||+ .+|+++++|
T Consensus 716 ~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqR-------iaLARAl~~~~~illLD--- 785 (1522)
T TIGR00957 716 RENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR-------VSLARAVYSNADIYLFD--- 785 (1522)
T ss_pred HHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHH-------HHHHHHHhcCCCEEEEc---
Confidence 33332221100 000000000122 4566776 799999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
||++.+|......+...+........ .+++ .-.+|+...+.. +|+| ..|++|++...|+.
T Consensus 786 Ep~saLD~~~~~~i~~~l~~~~~~~~--~~tv-IlvTH~~~~l~~-~D~i-i~l~~G~i~~~g~~ 845 (1522)
T TIGR00957 786 DPLSAVDAHVGKHIFEHVIGPEGVLK--NKTR-ILVTHGISYLPQ-VDVI-IVMSGGKISEMGSY 845 (1522)
T ss_pred CCccccCHHHHHHHHHHHhhhhhhhc--CCEE-EEEeCChhhhhh-CCEE-EEecCCeEEeeCCH
Confidence 99999999887555444321111110 0111 112488877655 8988 88899988766654
No 389
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.10 E-value=7.9e-11 Score=132.09 Aligned_cols=164 Identities=17% Similarity=0.231 Sum_probs=99.1
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeee
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIH 93 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~ 93 (350)
=.+++..+++|+.++|+||||||||||+++|+|. .+|..|.|.++|. +. |.+|.......++.
T Consensus 442 l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~-----------~~~~~G~i~~~g~-ia-----yv~Q~~~l~~~Ti~ 504 (1490)
T TIGR01271 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE-----------LEPSEGKIKHSGR-IS-----FSPQTSWIMPGTIK 504 (1490)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCE-EE-----EEeCCCccCCccHH
Confidence 3577888999999999999999999999999999 6899999998873 21 22221111112344
Q ss_pred eecccccccccCccccchHHHH------H---H----------------HHHHHHHHHhhc-CCCceeeecCCCCCCchh
Q 018809 94 DIAGLVRGAHEGQGLGNSFLSH------I---R----------------AVDGIFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (350)
Q Consensus 94 D~~g~~~~~~~~~~~~~~~l~~------l---~----------------~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~l 147 (350)
|+..++.... .. .....+.. + . .-..-+.++||+ .+|+++++| ||++.+
T Consensus 505 eNI~~g~~~~-~~-~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLD---ep~saL 579 (1490)
T TIGR01271 505 DNIIFGLSYD-EY-RYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFTHL 579 (1490)
T ss_pred HHHHhccccc-hH-HHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEe---CCcccC
Confidence 4433321100 00 00000000 0 0 000114577777 799999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 148 d~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
|......+...+ +.+..+ .+++.. .+|+...+. .+|++ ..|++|+++..|+.
T Consensus 580 D~~~~~~i~~~~--l~~~~~--~~tvil-vtH~~~~~~-~ad~i-i~l~~g~i~~~g~~ 631 (1490)
T TIGR01271 580 DVVTEKEIFESC--LCKLMS--NKTRIL-VTSKLEHLK-KADKI-LLLHEGVCYFYGTF 631 (1490)
T ss_pred CHHHHHHHHHHH--HHHHhc--CCeEEE-EeCChHHHH-hCCEE-EEEECCEEEEEcCH
Confidence 998875554431 111110 111111 249888765 48998 88888987765543
No 390
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.09 E-value=4e-10 Score=95.77 Aligned_cols=170 Identities=16% Similarity=0.269 Sum_probs=96.1
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcc-----hhHHHh-----------
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-----FEWLCQ----------- 78 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~-----l~~l~~----------- 78 (350)
+.+++.+.+|+..||+|.+|||||||++||++. ..|+.|.+.+.... +-.+++
T Consensus 23 ~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r-----------l~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeW 91 (258)
T COG4107 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR-----------LTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEW 91 (258)
T ss_pred cccceeecCCcEEEEEecCCCcHHhHHHHHhcc-----------cCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhcc
Confidence 678899999999999999999999999999998 78999999885321 111111
Q ss_pred hccCCCCC-Ccceeeeeeccccc------ccccCc--cccchHHHHHHH---------------HHHHHHHHhhc-CCCc
Q 018809 79 LFKPKSAV-PAFLEIHDIAGLVR------GAHEGQ--GLGNSFLSHIRA---------------VDGIFHVLRAF-EDPD 133 (350)
Q Consensus 79 ~~~~~~~~-~~~l~~~D~~g~~~------~~~~~~--~~~~~~l~~l~~---------------~d~~l~vv~a~-~~~~ 133 (350)
.|..|... --.+.+---..++. ..|.+. .-...+++.++. ..--+.++|.+ ..|.
T Consensus 92 G~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~Pr 171 (258)
T COG4107 92 GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPR 171 (258)
T ss_pred ceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCc
Confidence 01111100 00111111000100 000000 000001111000 00115677777 7899
Q ss_pred eeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcccc
Q 018809 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (350)
Q Consensus 134 vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~ 203 (350)
++++| ||+.++|+--+.-++..+.-+...+. -.+ .-.+|++..+.-+.+|+ ..+++|..+..
T Consensus 172 LvfMD---EPTGGLDVSVQARLLDllrgLv~~l~---la~-viVTHDl~VarLla~rl-mvmk~g~vve~ 233 (258)
T COG4107 172 LVFMD---EPTGGLDVSVQARLLDLLRGLVRELG---LAV-VIVTHDLAVARLLADRL-MVMKQGQVVES 233 (258)
T ss_pred eEEec---CCCCCcchhhHHHHHHHHHHHHHhcC---ceE-EEEechhHHHHHhhhcc-eeecCCCEecc
Confidence 99999 99999998765444444333332221 111 11259998887788888 88888877654
No 391
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.09 E-value=5.4e-11 Score=114.49 Aligned_cols=90 Identities=31% Similarity=0.500 Sum_probs=65.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
.+..++|+|.+|||||||||+|+|....++++||+|++|..+.+.+++. ..+.++||+|+....
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~----------------~~i~l~DT~G~~~~l 251 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG----------------GEVLLTDTVGFIRDL 251 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC----------------ceEEEEecCcccccC
Confidence 3479999999999999999999998766689999999999999988542 247899999986432
Q ss_pred ccC-ccccchHHHHHHHHHHHHHHHhh
Q 018809 103 HEG-QGLGNSFLSHIRAVDGIFHVLRA 128 (350)
Q Consensus 103 ~~~-~~~~~~~l~~l~~~d~~l~vv~a 128 (350)
... .......+..++.+|++++|+|+
T Consensus 252 ~~~lie~f~~tle~~~~ADlil~VvD~ 278 (351)
T TIGR03156 252 PHELVAAFRATLEEVREADLLLHVVDA 278 (351)
T ss_pred CHHHHHHHHHHHHHHHhCCEEEEEEEC
Confidence 110 00012223445666666666665
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=5.3e-11 Score=115.79 Aligned_cols=74 Identities=18% Similarity=0.399 Sum_probs=54.9
Q ss_pred HHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc
Q 018809 123 FHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (350)
Q Consensus 123 l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~ 201 (350)
+.++||+ .+||++.|| ||++.+|+.+ +.||+..+..+..++.. .+|+......+|..| .+++.-++-
T Consensus 207 laLARAlf~~pDlLLLD---EPTNhLDv~a-------v~WLe~yL~t~~~T~li-VSHDr~FLn~V~tdI-IH~~~~kL~ 274 (582)
T KOG0062|consen 207 LALARALFAKPDLLLLD---EPTNHLDVVA-------VAWLENYLQTWKITSLI-VSHDRNFLNTVCTDI-IHLENLKLD 274 (582)
T ss_pred HHHHHHHhcCCCEEeec---CCcccchhHH-------HHHHHHHHhhCCceEEE-EeccHHHHHHHHHHH-HHHhhhhhh
Confidence 4566776 799999999 9999999988 56677766655533322 249999999999999 788766553
Q ss_pred -ccCCCCh
Q 018809 202 -RLGDWKA 208 (350)
Q Consensus 202 -~~~~~t~ 208 (350)
|.|+++.
T Consensus 275 ~YkGN~~~ 282 (582)
T KOG0062|consen 275 YYKGNYSQ 282 (582)
T ss_pred hhcCcHHH
Confidence 4577653
No 393
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.07 E-value=6.1e-11 Score=99.55 Aligned_cols=169 Identities=19% Similarity=0.297 Sum_probs=104.0
Q ss_pred cccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchh-----------HH----Hhhc
Q 018809 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-----------WL----CQLF 80 (350)
Q Consensus 16 ~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~-----------~l----~~~~ 80 (350)
.+...-..|+.+.++||+|+|||||++.|.-+. -|.+|...+.+..++ .+ ...|
T Consensus 20 di~l~~~~getlvllgpsgagkssllr~lnlle-----------~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvf 88 (242)
T COG4161 20 DITLDCPEGETLVLLGPSGAGKSSLLRVLNLLE-----------MPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVF 88 (242)
T ss_pred eeeecCCCCCEEEEECCCCCchHHHHHHHHHHh-----------CCCCCeEEecccccccccCccHHHHHHHHHhhhhhh
Confidence 455567899999999999999999999998773 688888887664321 11 1133
Q ss_pred cCCCCCCcceeeeee----cccccccccC--ccccchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecC
Q 018809 81 KPKSAVPAFLEIHDI----AGLVRGAHEG--QGLGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 81 ~~~~~~~~~l~~~D~----~g~~~~~~~~--~~~~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~ 139 (350)
++-... .+++++++ |--..+..+. .....+.+.+++.+|.. +.++||+ .+|+++..|
T Consensus 89 qqy~lw-phltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfd- 166 (242)
T COG4161 89 QQYNLW-PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFD- 166 (242)
T ss_pred hhhccC-chhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeec-
Confidence 332222 24444432 2211222211 11223445555554433 5678887 899999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||+..+|+.-...+...++.+ .....+- .-.+|..+....+..++ -+|++|+++..|+
T Consensus 167 --eptaaldpeitaqvv~iikel----~~tgitq-vivthev~va~k~as~v-vyme~g~ive~g~ 224 (242)
T COG4161 167 --EPTAALDPEITAQIVSIIKEL----AETGITQ-VIVTHEVEVARKTASRV-VYMENGHIVEQGD 224 (242)
T ss_pred --CcccccCHHHHHHHHHHHHHH----HhcCceE-EEEEeehhHHHhhhhhe-EeeecCeeEeecc
Confidence 999888875543333333222 1111000 01148888888999999 8999999987654
No 394
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.07 E-value=2e-10 Score=119.49 Aligned_cols=46 Identities=26% Similarity=0.275 Sum_probs=40.3
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~ 70 (350)
-..++.++++|++++|+||||||||||+++|+|. .+|..|.+.+++
T Consensus 468 l~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl-----------~~~~~G~i~~~~ 513 (659)
T TIGR00954 468 IESLSFEVPSGNHLLICGPNGCGKSSLFRILGEL-----------WPVYGGRLTKPA 513 (659)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCeEeecC
Confidence 3567889999999999999999999999999999 467788887754
No 395
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=9.1e-11 Score=113.57 Aligned_cols=93 Identities=33% Similarity=0.447 Sum_probs=76.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecc
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAG 97 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g 97 (350)
.+++.|-.++|+|+||+|||||+|+|+.....+ ++.|+||++...-.+.++|. .+.+.||+|
T Consensus 263 e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~-----------------~v~L~DTAG 325 (531)
T KOG1191|consen 263 ERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGV-----------------PVRLSDTAG 325 (531)
T ss_pred HHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCe-----------------EEEEEeccc
Confidence 356789999999999999999999999999988 99999999999999999985 378999999
Q ss_pred ccccccc-Ccccc-chHHHHHHHHHHHHHHHhh
Q 018809 98 LVRGAHE-GQGLG-NSFLSHIRAVDGIFHVLRA 128 (350)
Q Consensus 98 ~~~~~~~-~~~~~-~~~l~~l~~~d~~l~vv~a 128 (350)
+-+.... -+.++ ++...+++.+|+++.|+++
T Consensus 326 iRe~~~~~iE~~gI~rA~k~~~~advi~~vvda 358 (531)
T KOG1191|consen 326 IREESNDGIEALGIERARKRIERADVILLVVDA 358 (531)
T ss_pred cccccCChhHHHhHHHHHHHHhhcCEEEEEecc
Confidence 9872222 12222 4556778888888888777
No 396
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.04 E-value=1e-10 Score=86.69 Aligned_cols=45 Identities=27% Similarity=0.291 Sum_probs=41.8
Q ss_pred CceeeccCC----CCeeeeecCCCCChhhhhhccccccccCeeEEEEEe
Q 018809 304 LIYFFTAGP----DEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVVA 348 (350)
Q Consensus 304 li~~ft~~~----~e~~a~~~~~gsta~~~A~~IHsd~~~~fi~A~v~~ 348 (350)
||++||+.+ |..++.++++|||+.|+|.+||+||.+.|++|.||+
T Consensus 1 lirvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g 49 (75)
T cd01666 1 LIRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWG 49 (75)
T ss_pred CEEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEec
Confidence 689999987 456899999999999999999999999999999985
No 397
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.04 E-value=1.1e-09 Score=91.01 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=79.2
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh------hccCCCCCCc
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ------LFKPKSAVPA 88 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~------~~~~~~~~~~ 88 (350)
.+++..|.+|+++.|+||+|||||||+.-+.|.-. +.-..+|.+.+++++++.++. +..+......
T Consensus 19 a~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La--------~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFp 90 (213)
T COG4136 19 ANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALA--------GQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFP 90 (213)
T ss_pred EeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcc--------cCcceeeEEEECCeeccccchhhhheeeeeccccccc
Confidence 45788899999999999999999999999999832 123358999999988765433 2222222333
Q ss_pred ceeeeeecccccccc-cCccc---cchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCchhHH
Q 018809 89 FLEIHDIAGLVRGAH-EGQGL---GNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (350)
Q Consensus 89 ~l~~~D~~g~~~~~~-~~~~~---~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (350)
++.+..+.-+.-.+. ++..+ .+..+....... +-+.+.|++ ..|+.+.+| ||++.+|.
T Consensus 91 hlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLD---EPFS~LD~ 167 (213)
T COG4136 91 HLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLD---EPFSRLDV 167 (213)
T ss_pred ccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeC---CchhHHHH
Confidence 556555544432221 12111 111111111111 114456666 789999999 99999887
Q ss_pred HHH
Q 018809 150 ISA 152 (350)
Q Consensus 150 ~~~ 152 (350)
.-.
T Consensus 168 ALR 170 (213)
T COG4136 168 ALR 170 (213)
T ss_pred HHH
Confidence 553
No 398
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.02 E-value=3.8e-10 Score=120.29 Aligned_cols=165 Identities=16% Similarity=0.214 Sum_probs=103.4
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh--hccCCCCCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKSAVP 87 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~--~~~~~~~~~ 87 (350)
++++.+++.|+.+|||||+||||||.+.+|-.. .+|..|.|.++|.+++. +.. ...+|...-
T Consensus 1007 ~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRf-----------Ydp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~L 1075 (1228)
T KOG0055|consen 1007 NNLSLSIRAGQTVALVGPSGSGKSTVISLLERF-----------YDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVL 1075 (1228)
T ss_pred cCCcEEecCCCEEEEECCCCCCHHHHHHHHHHh-----------cCCCCCeEEECCcccccCCHHHHHHhcceeccCchh
Confidence 778899999999999999999999999999999 69999999999987543 322 122333333
Q ss_pred cceeeeeecccccccccCccccchHHHHHHHHHHH----------------------------HHHHhhc-CCCceeeec
Q 018809 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGI----------------------------FHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~----------------------------l~vv~a~-~~~~vl~ld 138 (350)
+.-++.|+..++.... -..+..+.++.|++= +.++||+ .+|+|++||
T Consensus 1076 F~~TIrENI~YG~~~v----s~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLD 1151 (1228)
T KOG0055|consen 1076 FNGTIRENIAYGSEEV----SEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLD 1151 (1228)
T ss_pred hcccHHHHHhccCCCC----CHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeee
Confidence 3344555444431000 001111111111110 4466666 799999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|.++.+|...+......++..... +. . .--+|.+.-+ .-+|.| .++.+|+++..|+
T Consensus 1152 ---EATSALDseSErvVQeALd~a~~g--RT--~--IvIAHRLSTI-qnaD~I-~Vi~~G~VvE~Gt 1207 (1228)
T KOG0055|consen 1152 ---EATSALDSESERVVQEALDRAMEG--RT--T--IVIAHRLSTI-QNADVI-AVLKNGKVVEQGT 1207 (1228)
T ss_pred ---ccchhhhhhhHHHHHHHHHHhhcC--Cc--E--EEEecchhhh-hcCCEE-EEEECCEEEeccc
Confidence 999999998864444433221110 00 0 0013777554 457777 8899999887765
No 399
>COG2262 HflX GTPases [General function prediction only]
Probab=99.01 E-value=1.6e-10 Score=110.08 Aligned_cols=87 Identities=31% Similarity=0.519 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~~ 104 (350)
..++|+|-.|||||||||+|||..+...+..|+|++|..-.+.++|. ..+.+.||+||+....
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g----------------~~vlLtDTVGFI~~LP- 255 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDG----------------RKVLLTDTVGFIRDLP- 255 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCC----------------ceEEEecCccCcccCC-
Confidence 48999999999999999999999888899999999999999998852 3578999999987543
Q ss_pred CccccchH---HHHHHHHHHHHHHHhhc
Q 018809 105 GQGLGNSF---LSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 105 ~~~~~~~~---l~~l~~~d~~l~vv~a~ 129 (350)
..+...| ++....+|+++||+|++
T Consensus 256 -~~LV~AFksTLEE~~~aDlllhVVDaS 282 (411)
T COG2262 256 -HPLVEAFKSTLEEVKEADLLLHVVDAS 282 (411)
T ss_pred -hHHHHHHHHHHHHhhcCCEEEEEeecC
Confidence 2344555 45556788889988874
No 400
>PRK11058 GTPase HflX; Provisional
Probab=99.01 E-value=1.3e-10 Score=114.46 Aligned_cols=86 Identities=31% Similarity=0.511 Sum_probs=62.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~~ 104 (350)
-.++|+|.||||||||||+|+|....++++||+|++|..+.+.+++. ..+.++||+|+......
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~----------------~~~~l~DTaG~~r~lp~ 261 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV----------------GETVLADTVGFIRHLPH 261 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC----------------CeEEEEecCcccccCCH
Confidence 37999999999999999999999887889999999999999888652 14679999998543111
Q ss_pred CccccchH---HHHHHHHHHHHHHHhh
Q 018809 105 GQGLGNSF---LSHIRAVDGIFHVLRA 128 (350)
Q Consensus 105 ~~~~~~~~---l~~l~~~d~~l~vv~a 128 (350)
.+...| +..++.+|++++|+|+
T Consensus 262 --~lve~f~~tl~~~~~ADlIL~VvDa 286 (426)
T PRK11058 262 --DLVAAFKATLQETRQATLLLHVVDA 286 (426)
T ss_pred --HHHHHHHHHHHHhhcCCEEEEEEeC
Confidence 112222 3334555555555554
No 401
>PTZ00243 ABC transporter; Provisional
Probab=99.00 E-value=4.6e-10 Score=126.29 Aligned_cols=164 Identities=18% Similarity=0.172 Sum_probs=96.8
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeee
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D 94 (350)
+.++..+++|+.++|+|+||||||||+++|+|. .+|..|.|.+.+ .+. |.+|.......++.|
T Consensus 677 ~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~-----------~~~~~G~i~~~~-~i~-----yv~Q~~~l~~~Tv~e 739 (1560)
T PTZ00243 677 RDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQ-----------FEISEGRVWAER-SIA-----YVPQQAWIMNATVRG 739 (1560)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECC-eEE-----EEeCCCccCCCcHHH
Confidence 467788999999999999999999999999999 688999987753 121 112211111224444
Q ss_pred ecccccccccCccccchHH---------HHH----------------HHHHHHHHHHhhc-CCCceeeecCCCCCCchhH
Q 018809 95 IAGLVRGAHEGQGLGNSFL---------SHI----------------RAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (350)
Q Consensus 95 ~~g~~~~~~~~~~~~~~~l---------~~l----------------~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (350)
+..+...... .. ..+.+ +.+ ..-..-+.++||+ .+|+++++| ||++.+|
T Consensus 740 nI~~~~~~~~-~~-~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLD---EP~saLD 814 (1560)
T PTZ00243 740 NILFFDEEDA-AR-LADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLD---DPLSALD 814 (1560)
T ss_pred HHHcCChhhH-HH-HHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc---CccccCC
Confidence 4333211000 00 00000 000 0000115677777 899999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 149 ~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
....+.+...+- ...+. .+++.. .+|+...+ ..+|++ ..|++|++...|+..
T Consensus 815 ~~~~~~i~~~~~--~~~~~--~~TvIl-vTH~~~~~-~~ad~i-i~l~~G~i~~~G~~~ 866 (1560)
T PTZ00243 815 AHVGERVVEECF--LGALA--GKTRVL-ATHQVHVV-PRADYV-VALGDGRVEFSGSSA 866 (1560)
T ss_pred HHHHHHHHHHHH--HHhhC--CCEEEE-EeCCHHHH-HhCCEE-EEEECCEEEEecCHH
Confidence 876543333211 01110 111111 24888876 468998 889999987666543
No 402
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.99 E-value=5.8e-10 Score=109.25 Aligned_cols=72 Identities=18% Similarity=0.429 Sum_probs=52.9
Q ss_pred HHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccccHHHHHHHHHHHHHHhhcCCc-
Q 018809 124 HVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEK-SMKRSNDKQLKIEHELCQRVKAWLQDGKD- 200 (350)
Q Consensus 124 ~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~-~~~~~~~h~~~~~~~l~~~i~~~L~~g~~- 200 (350)
.+++++ .+|+++.|| ||++++|+-. +.+++..+.++.. .+-.. .|+.+.+..+|..| ..|..++.
T Consensus 231 aLAr~Lf~kP~LLLLD---EPtnhLDleA-------~~wLee~L~k~d~~~lVi~-sh~QDfln~vCT~I-i~l~~kkl~ 298 (614)
T KOG0927|consen 231 ALARALFQKPDLLLLD---EPTNHLDLEA-------IVWLEEYLAKYDRIILVIV-SHSQDFLNGVCTNI-IHLDNKKLI 298 (614)
T ss_pred HHHHHHhcCCCEEEec---CCccCCCHHH-------HHHHHHHHHhccCceEEEE-ecchhhhhhHhhhh-heeccccee
Confidence 344554 699999999 9999999876 4456666666655 23233 39999999999999 88888874
Q ss_pred cccCCCC
Q 018809 201 VRLGDWK 207 (350)
Q Consensus 201 ~~~~~~t 207 (350)
.|.|+++
T Consensus 299 ~y~Gnyd 305 (614)
T KOG0927|consen 299 YYEGNYD 305 (614)
T ss_pred eecCCHH
Confidence 4557764
No 403
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.97 E-value=3.8e-10 Score=109.12 Aligned_cols=90 Identities=24% Similarity=0.272 Sum_probs=73.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
...+++|||.||+|||||+|+|+|....+ ++.|+||+++....+.++|+ .+.++||+|+-+.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~-----------------~~~liDTAGiRrk 239 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR-----------------KYVLIDTAGIRRK 239 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe-----------------EEEEEECCCCCcc
Confidence 45799999999999999999999998877 99999999999999998875 3789999999765
Q ss_pred cccCcc----ccchHHHHHHHHHHHHHHHhhc
Q 018809 102 AHEGQG----LGNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 102 ~~~~~~----~~~~~l~~l~~~d~~l~vv~a~ 129 (350)
..-..+ -..+.+..+..+|.++.|+||.
T Consensus 240 ~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~ 271 (444)
T COG1160 240 GKITESVEKYSVARTLKAIERADVVLLVIDAT 271 (444)
T ss_pred cccccceEEEeehhhHhHHhhcCEEEEEEECC
Confidence 433221 1245567788888888888875
No 404
>PLN03130 ABC transporter C family member; Provisional
Probab=98.97 E-value=4.8e-10 Score=126.40 Aligned_cols=160 Identities=17% Similarity=0.218 Sum_probs=94.5
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcc-eEEEeCCcchhHHHhhccCCCCCCcceee
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE-ARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~-G~i~~~~~~l~~l~~~~~~~~~~~~~l~~ 92 (350)
=.+++..+++|+.++|+|++|||||||+++|+|. .+|.+ |.|.+.+. +. |.+|...-..-++
T Consensus 633 L~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~-----------~~~~~GG~I~l~~~-Ia-----yv~Q~p~LfngTI 695 (1622)
T PLN03130 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGE-----------LPPRSDASVVIRGT-VA-----YVPQVSWIFNATV 695 (1622)
T ss_pred eeceeEEecCCCEEEEECCCCCCHHHHHHHHHHh-----------hccCCCceEEEcCe-EE-----EEcCccccCCCCH
Confidence 4678889999999999999999999999999999 68888 88877542 11 1111111111222
Q ss_pred eeecccccccc------------------------------cCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCC
Q 018809 93 HDIAGLVRGAH------------------------------EGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 93 ~D~~g~~~~~~------------------------------~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
.|+.-++.... .|..+..--.++ +.++||+ .+++++++|
T Consensus 696 reNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQR-------IaLARAly~~~~IlLLD--- 765 (1622)
T PLN03130 696 RDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQR-------VSMARAVYSNSDVYIFD--- 765 (1622)
T ss_pred HHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHH-------HHHHHHHhCCCCEEEEC---
Confidence 23222221100 000011111122 4566776 799999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
||++.+|......+.... +...++ .+++ .-.+|.... ...+|+| ..|++|++...|+..
T Consensus 766 EptSALD~~~~~~I~~~~--l~~~l~--~kTv-IlVTH~l~~-l~~aD~I-i~L~~G~i~e~Gt~~ 824 (1622)
T PLN03130 766 DPLSALDAHVGRQVFDKC--IKDELR--GKTR-VLVTNQLHF-LSQVDRI-ILVHEGMIKEEGTYE 824 (1622)
T ss_pred CCccccCHHHHHHHHHHH--hhHHhc--CCEE-EEEECCHhH-HHhCCEE-EEEeCCEEEEeCCHH
Confidence 999999987654332211 111110 0111 112488754 4568888 788999987666543
No 405
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.97 E-value=1.8e-09 Score=91.55 Aligned_cols=151 Identities=19% Similarity=0.322 Sum_probs=89.9
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeC--Ccc------------------
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP--DER------------------ 72 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~--~~~------------------ 72 (350)
--++++.+++.|+++++=||+|+|||||+++|-+. ..|++|.|.+. |.-
T Consensus 26 V~~~vslsV~aGECvvL~G~SG~GKStllr~LYaN-----------Y~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~T 94 (235)
T COG4778 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYAN-----------YLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTT 94 (235)
T ss_pred eeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhc-----------cCCCCceEEEEeCcchhhhhccChHHHHHHHHhh
Confidence 34788999999999999999999999999999998 58999998774 211
Q ss_pred hhHHHhhccCCCCCCcceeeeee---cccccccccC--ccccchHHHHHHHHHHH---------------HHHHhhc-CC
Q 018809 73 FEWLCQLFKPKSAVPAFLEIHDI---AGLVRGAHEG--QGLGNSFLSHIRAVDGI---------------FHVLRAF-ED 131 (350)
Q Consensus 73 l~~l~~~~~~~~~~~~~l~~~D~---~g~~~~~~~~--~~~~~~~l~~l~~~d~~---------------l~vv~a~-~~ 131 (350)
+.+.+++. +.+| .+.-+|+ |.+..+-... .......+.+++...-+ +.++|+| -|
T Consensus 95 iGyVSQFL---RviP-RV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd 170 (235)
T COG4778 95 IGYVSQFL---RVIP-RVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVD 170 (235)
T ss_pred hHHHHHHH---Hhcc-CcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhcc
Confidence 11222211 1122 1222232 2222111100 01111222233222222 5677888 77
Q ss_pred CceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cccHHHHHHHHHHH
Q 018809 132 PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRV 191 (350)
Q Consensus 132 ~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~-----~h~~~~~~~l~~~i 191 (350)
..++.|| ||+..+|.-+.......+. .....+. -|+-+.-+.++||+
T Consensus 171 ~pILLLD---EPTasLDa~Nr~vVveli~----------e~Ka~GaAlvGIFHDeevre~vadR~ 222 (235)
T COG4778 171 YPILLLD---EPTASLDATNRAVVVELIR----------EAKARGAALVGIFHDEEVREAVADRL 222 (235)
T ss_pred CceEEec---CCcccccccchHHHHHHHH----------HHHhcCceEEEeeccHHHHHHHhhhe
Confidence 8899999 9999999888644433322 1111222 28877778888887
No 406
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.94 E-value=2.6e-09 Score=101.26 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=44.8
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcch
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l 73 (350)
.|++.+|++|+++-|+|.||||||||...|||+ ..|++|.|.++|+.+
T Consensus 340 gPiNl~ikrGelvFliG~NGsGKST~~~LLtGL-----------~~PqsG~I~ldg~pV 387 (546)
T COG4615 340 GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL-----------YQPQSGEILLDGKPV 387 (546)
T ss_pred cceeeEEecCcEEEEECCCCCcHHHHHHHHhcc-----------cCCCCCceeECCccC
Confidence 689999999999999999999999999999999 589999999998654
No 407
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=98.93 E-value=3.7e-09 Score=102.52 Aligned_cols=123 Identities=18% Similarity=0.229 Sum_probs=83.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-------hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-------~~~~~~~ 85 (350)
--..+++.+.+|..++||||+|+||||+++.|... .+.++|.|.++|+++....+ ...||..
T Consensus 553 vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRf-----------fdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDt 621 (790)
T KOG0056|consen 553 VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRF-----------FDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDT 621 (790)
T ss_pred eeecceEEecCCcEEEEECCCCCchhHHHHHHHHH-----------hhccCceEEEcCchHHHHHHHHHHHhcCcccCcc
Confidence 33678889999999999999999999999999999 58899999999998866433 2445554
Q ss_pred CCcceeeeeecccccccccCccccchHHHHH---HHHHHH-------------------------HHHHhhc-CCCceee
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHI---RAVDGI-------------------------FHVLRAF-EDPDIIH 136 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l---~~~d~~-------------------------l~vv~a~-~~~~vl~ 136 (350)
+-..-++.++..+.+.....+ ...+.. ..-|.+ +.++|+. .+|.+++
T Consensus 622 vLFNdTI~yNIryak~~Asne----evyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIl 697 (790)
T KOG0056|consen 622 VLFNDTILYNIRYAKPSASNE----EVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIIL 697 (790)
T ss_pred eeecceeeeheeecCCCCChH----HHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEE
Confidence 443344444444433221111 111111 111222 4566766 7999999
Q ss_pred ecCCCCCCchhHHHHHH
Q 018809 137 VDDSVDPVRDLEVISAE 153 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~e 153 (350)
|| |.++.+|.-++.
T Consensus 698 LD---EATSALDT~tER 711 (790)
T KOG0056|consen 698 LD---EATSALDTNTER 711 (790)
T ss_pred Ec---chhhhcCCccHH
Confidence 99 888888887753
No 408
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.93 E-value=5.9e-10 Score=82.96 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=30.2
Q ss_pred eeeecCCCCChhhhhhccccccccCeeEEEEE
Q 018809 316 KCWQIRRQTKAPQAAGTIHTDFERGFICAEVV 347 (350)
Q Consensus 316 ~a~~~~~gsta~~~A~~IHsd~~~~fi~A~v~ 347 (350)
++|++++|+||.|+|++||+||+++|++|.++
T Consensus 23 d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~ 54 (76)
T cd01669 23 DAFLLPKGSTARDLAYAIHTDIGDGFLHAIDA 54 (76)
T ss_pred ceEEECCCCCHHHHHHHHHHHHHhcceeeEEe
Confidence 59999999999999999999999999999764
No 409
>PLN03232 ABC transporter C family member; Provisional
Probab=98.93 E-value=9.4e-10 Score=123.66 Aligned_cols=160 Identities=18% Similarity=0.207 Sum_probs=91.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEE-EeCCcchhHHHhhccCCCCCCccee
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV-NIPDERFEWLCQLFKPKSAVPAFLE 91 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i-~~~~~~l~~l~~~~~~~~~~~~~l~ 91 (350)
-=++++.++++|+.++|+|++|||||||+++|+|. .+|.+|.+ .+.+ .+. |.+|...-..-+
T Consensus 632 vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~-----------~~~~~G~i~~~~~-~Ia-----yv~Q~p~Lf~gT 694 (1495)
T PLN03232 632 TLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGE-----------LSHAETSSVVIRG-SVA-----YVPQVSWIFNAT 694 (1495)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CcccCCCEEEecC-cEE-----EEcCcccccccc
Confidence 34678899999999999999999999999999999 56777643 3322 111 111111111112
Q ss_pred eeeecccccccc------------------------------cCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCC
Q 018809 92 IHDIAGLVRGAH------------------------------EGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 92 ~~D~~g~~~~~~------------------------------~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~ 140 (350)
+.|+.-++.... .|..+..--.++ +.++||+ .+|+++++|
T Consensus 695 IreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR-------IaLARAly~~~~IlLLD-- 765 (1495)
T PLN03232 695 VRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQR-------VSMARAVYSNSDIYIFD-- 765 (1495)
T ss_pred HHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHH-------HHHHHHHhcCCCEEEEc--
Confidence 222222221100 000010001122 4566776 799999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
||++.+|......+...+ +...++ .+++ .-.+|.... ...+|+| ..|++|++...|+.
T Consensus 766 -EptSaLD~~t~~~I~~~~--l~~~l~--~kT~-IlvTH~~~~-l~~aD~I-i~L~~G~i~~~Gt~ 823 (1495)
T PLN03232 766 -DPLSALDAHVAHQVFDSC--MKDELK--GKTR-VLVTNQLHF-LPLMDRI-ILVSEGMIKEEGTF 823 (1495)
T ss_pred -CCccccCHHHHHHHHHHH--hhhhhc--CCEE-EEEECChhh-HHhCCEE-EEEeCCEEEEecCH
Confidence 999999987764333221 111110 0111 112488765 4568888 78899998766654
No 410
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.90 E-value=1.9e-09 Score=113.15 Aligned_cols=88 Identities=28% Similarity=0.386 Sum_probs=64.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~~ 104 (350)
.+++++|.||||||||||.|+|.+..++|+|++|.++..|.+..++. .++++|+||.......
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~-----------------~i~lvDtPG~ysl~~~ 66 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDH-----------------QVTLVDLPGTYSLTTI 66 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCce-----------------EEEEEECCCccccccc
Confidence 47999999999999999999999888899999999999998876642 4889999998754321
Q ss_pred C--ccccchHHH-H--HHHHHHHHHHHhhc
Q 018809 105 G--QGLGNSFLS-H--IRAVDGIFHVLRAF 129 (350)
Q Consensus 105 ~--~~~~~~~l~-~--l~~~d~~l~vv~a~ 129 (350)
. .+..++... . .+.+|+++.|+|+.
T Consensus 67 ~~~~s~~E~i~~~~l~~~~aD~vI~VvDat 96 (772)
T PRK09554 67 SSQTSLDEQIACHYILSGDADLLINVVDAS 96 (772)
T ss_pred cccccHHHHHHHHHHhccCCCEEEEEecCC
Confidence 1 112222111 1 12567777777774
No 411
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.87 E-value=2.9e-09 Score=104.46 Aligned_cols=168 Identities=15% Similarity=0.235 Sum_probs=88.6
Q ss_pred cccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCc-chhHHHhhccCCCCCC-cce---
Q 018809 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE-RFEWLCQLFKPKSAVP-AFL--- 90 (350)
Q Consensus 16 ~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~-~l~~l~~~~~~~~~~~-~~l--- 90 (350)
.+++.+..+.++++|||||||||||++.++|. ..|..|.+.-.-. .+.++.+....+-... ..+
T Consensus 408 ~l~fgid~~srvAlVGPNG~GKsTLlKl~~gd-----------l~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~ 476 (614)
T KOG0927|consen 408 KLNFGIDLDSRVALVGPNGAGKSTLLKLITGD-----------LQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFM 476 (614)
T ss_pred hhhcccCcccceeEecCCCCchhhhHHHHhhc-----------cccccccccccccccchhhhhhhHhhcCcchhHHHHH
Confidence 35677889999999999999999999999999 7899998864321 1111111000000000 000
Q ss_pred --eeee------eccc-ccccccCccccchHHHHHHH--HHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHHH
Q 018809 91 --EIHD------IAGL-VRGAHEGQGLGNSFLSHIRA--VDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDI 159 (350)
Q Consensus 91 --~~~D------~~g~-~~~~~~~~~~~~~~l~~l~~--~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~l 159 (350)
.+-| .-++ ++..-.+..... -.+.+.. -..+++..-+...|.+++|| ||++++|+-..
T Consensus 477 ~~~~~~~~~~e~~r~ilgrfgLtgd~q~~-p~~~LS~Gqr~rVlFa~l~~kqP~lLlLD---EPtnhLDi~ti------- 545 (614)
T KOG0927|consen 477 MPKFPDEKELEEMRSILGRFGLTGDAQVV-PMSQLSDGQRRRVLFARLAVKQPHLLLLD---EPTNHLDIETI------- 545 (614)
T ss_pred HHhccccchHHHHHHHHHHhCCCcccccc-chhhcccccchhHHHHHHHhcCCcEEEec---CCCcCCCchhH-------
Confidence 0000 0000 000000000000 0111111 11223433445899999999 99999988763
Q ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCc-cccCCCC
Q 018809 160 EFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD-VRLGDWK 207 (350)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~-~~~~~~t 207 (350)
..+.+.++.+...+.. .+|+...+..+.+++ ....++.. .++|++.
T Consensus 546 d~laeaiNe~~Ggvv~-vSHDfrlI~qVaeEi-~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 546 DALAEAINEFPGGVVL-VSHDFRLISQVAEEI-WVCENGTVTKWDGDIE 592 (614)
T ss_pred HHHHHHHhccCCceee-eechhhHHHHHHHHh-HhhccCceeecCccHH
Confidence 2244444444321111 249999999999999 44455544 3456543
No 412
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=98.85 E-value=1.1e-09 Score=108.38 Aligned_cols=93 Identities=29% Similarity=0.385 Sum_probs=68.4
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
.++.|.+++|+|+||+|||||+|.|++.... ++++|+||++...+.+.++|. .+.++||||+
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~-----------------~v~l~DTaG~ 261 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGI-----------------LIKLLDTAGI 261 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCE-----------------EEEEeeCCCc
Confidence 4578899999999999999999999998654 489999999998898888763 3689999998
Q ss_pred ccccccCcccc-chHHHHHHHHHHHHHHHhhc
Q 018809 99 VRGAHEGQGLG-NSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 99 ~~~~~~~~~~~-~~~l~~l~~~d~~l~vv~a~ 129 (350)
.......+..+ .+....++.+|++++|+|+.
T Consensus 262 ~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s 293 (442)
T TIGR00450 262 REHADFVERLGIEKSFKAIKQADLVIYVLDAS 293 (442)
T ss_pred ccchhHHHHHHHHHHHHHHhhCCEEEEEEECC
Confidence 54321111111 12334556677777766653
No 413
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.84 E-value=1.5e-09 Score=91.12 Aligned_cols=61 Identities=31% Similarity=0.389 Sum_probs=49.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
|.+++++|++|+|||||+|.+++.... ++++|++|.....+.+.+.+. .+.++|+||+...
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~DtpG~~~~ 62 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGI-----------------PVRLIDTAGIRET 62 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCE-----------------EEEEEECCCcCCC
Confidence 678999999999999999999998653 478899988877777766542 4789999998643
No 414
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.84 E-value=1.6e-09 Score=96.22 Aligned_cols=61 Identities=38% Similarity=0.640 Sum_probs=51.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
.+|+|+|++|||||||+|.+++....+.+.+++|..+..+.+.+++. ..+.++|+||+...
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~i~Dt~G~~~~ 102 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG----------------REVLLTDTVGFIRD 102 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC----------------ceEEEeCCCccccC
Confidence 59999999999999999999998766678899999998888776642 14889999998643
No 415
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.82 E-value=1.4e-08 Score=110.64 Aligned_cols=161 Identities=22% Similarity=0.290 Sum_probs=96.4
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-------hccCCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-------LFKPKSAV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-------~~~~~~~~ 86 (350)
=+.++..|++|++|||||+.|||||||.++|.++ .+|..|.|.++|.++..+.- -.-||..+
T Consensus 1156 Lk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl-----------~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPv 1224 (1381)
T KOG0054|consen 1156 LKGISFTIKPGEKVGIVGRTGAGKSSLILALFRL-----------VEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPV 1224 (1381)
T ss_pred hcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHh-----------cCccCCeEEEcCeecccccHHHHHhcCeeeCCCCc
Confidence 3778889999999999999999999999999999 68999999999987654322 11122211
Q ss_pred Ccceeee------------------eeccc-----------cccccc-C--ccccchHHHHHHHHHHHHHHHhhc-CCCc
Q 018809 87 PAFLEIH------------------DIAGL-----------VRGAHE-G--QGLGNSFLSHIRAVDGIFHVLRAF-EDPD 133 (350)
Q Consensus 87 ~~~l~~~------------------D~~g~-----------~~~~~~-~--~~~~~~~l~~l~~~d~~l~vv~a~-~~~~ 133 (350)
-+.-++. +...+ ...-.+ | -+.|++ + ++-++||+ .+.+
T Consensus 1225 LFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQR--Q-------LlCLARALLr~sk 1295 (1381)
T KOG0054|consen 1225 LFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQR--Q-------LLCLARALLRKSK 1295 (1381)
T ss_pred eecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHH--H-------HHHHHHHHhccCC
Confidence 1000111 00110 000000 1 111111 2 24566776 7999
Q ss_pred eeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 134 vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|+++| |.+..+|..++.++..-+. +++...--..-+|.+..+. =|||| -+|++|+++..|.
T Consensus 1296 ILvLD---EATAsVD~~TD~lIQ~tIR------~~F~dcTVltIAHRl~TVm-d~DrV-lVld~G~v~Efds 1356 (1381)
T KOG0054|consen 1296 ILVLD---EATASVDPETDALIQKTIR------EEFKDCTVLTIAHRLNTVM-DSDRV-LVLDAGRVVEFDS 1356 (1381)
T ss_pred EEEEe---cccccCChHHHHHHHHHHH------HHhcCCeEEEEeeccchhh-hcCeE-EEeeCCeEeecCC
Confidence 99999 8888888887644433321 1111100011137665542 37888 8889998875543
No 416
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.81 E-value=5.3e-09 Score=113.84 Aligned_cols=158 Identities=20% Similarity=0.256 Sum_probs=97.3
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCccee
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLE 91 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~ 91 (350)
|.-..++..++.|+.+|++|+.|||||||+.+|+|. .+..+|.+.++|. +. |.+|..--..-+
T Consensus 535 ~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGE-----------m~~~sG~v~v~gs-ia-----Yv~Q~pWI~ngT 597 (1381)
T KOG0054|consen 535 PTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGE-----------MPKLSGSVAVNGS-VA-----YVPQQPWIQNGT 597 (1381)
T ss_pred ccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcC-----------cccccceEEEcCe-EE-----EeccccHhhCCc
Confidence 355788999999999999999999999999999999 7899999999884 22 222211111122
Q ss_pred eeeecccccccc------------------------------cCc--cccchHHHHHHHHHHHHHHHhhc-CCCceeeec
Q 018809 92 IHDIAGLVRGAH------------------------------EGQ--GLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 92 ~~D~~g~~~~~~------------------------------~~~--~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld 138 (350)
+.|+.-++.... +|- +-|++ ++ +.++||. ++.|+..+|
T Consensus 598 vreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQK--qR-------IsLARAVY~~adIYLLD 668 (1381)
T KOG0054|consen 598 VRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQK--QR-------ISLARAVYQDADIYLLD 668 (1381)
T ss_pred HHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHH--HH-------HHHHHHHhccCCEEEEc
Confidence 333333221110 000 11111 22 4567776 799999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHH-HH-HHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIED-VE-KSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~-~~-~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
||++.+|.-.-..+ .++.+.. +. +++ .-.||... ...-+|.| .+|++|++...|+++
T Consensus 669 ---DplSAVDahvg~~i------f~~ci~~~L~~KT~-ILVTHql~-~L~~ad~I-ivl~~G~I~~~Gty~ 727 (1381)
T KOG0054|consen 669 ---DPLSAVDAHVGKHI------FEECIRGLLRGKTV-ILVTHQLQ-FLPHADQI-IVLKDGKIVESGTYE 727 (1381)
T ss_pred ---CcchhhhHhhhHHH------HHHHHHhhhcCCEE-EEEeCchh-hhhhCCEE-EEecCCeEecccCHH
Confidence 99998887543111 1122211 11 111 11247543 34567777 888999998888776
No 417
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.81 E-value=2.5e-09 Score=106.40 Aligned_cols=93 Identities=29% Similarity=0.325 Sum_probs=69.9
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
.++.|.+++|+|++|+|||||+|.|+|.... ++++|+||++.....+.++|. .+.++||||+
T Consensus 211 ~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~-----------------~i~l~DT~G~ 273 (449)
T PRK05291 211 ILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGI-----------------PLRLIDTAGI 273 (449)
T ss_pred HhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCe-----------------EEEEEeCCCC
Confidence 4567889999999999999999999998764 489999999998888888763 3789999998
Q ss_pred ccccccCcccc-chHHHHHHHHHHHHHHHhhc
Q 018809 99 VRGAHEGQGLG-NSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 99 ~~~~~~~~~~~-~~~l~~l~~~d~~l~vv~a~ 129 (350)
..........+ .+.+..++.+|++++|+|+.
T Consensus 274 ~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s 305 (449)
T PRK05291 274 RETDDEVEKIGIERSREAIEEADLVLLVLDAS 305 (449)
T ss_pred CCCccHHHHHHHHHHHHHHHhCCEEEEEecCC
Confidence 54221111111 22345677788888888774
No 418
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.81 E-value=7.8e-09 Score=110.65 Aligned_cols=185 Identities=14% Similarity=0.208 Sum_probs=109.9
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHhhccCCCCCCcc
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQLFKPKSAVPAF 89 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~~~~~~~~~~~~ 89 (350)
++++|-+++|...||+|.+|||||||+|+|+|.. |.--..|.|.++|....+ .+.+.+++..--.+
T Consensus 808 ~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~---------t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 808 NNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK---------TGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred hcCceEecCCceeehhcCCCCchHHHHHHHhcCc---------ccceEEeEEEECCeeCchhhhccccceeecccccCcc
Confidence 7889999999999999999999999999999984 345578999999876542 22333433333345
Q ss_pred eeeeeeccccccccc----Cc----cccchHHHHH---HHHHHHHHHH----------------hhcCCC-ceeeecCCC
Q 018809 90 LEIHDIAGLVRGAHE----GQ----GLGNSFLSHI---RAVDGIFHVL----------------RAFEDP-DIIHVDDSV 141 (350)
Q Consensus 90 l~~~D~~g~~~~~~~----~~----~~~~~~l~~l---~~~d~~l~vv----------------~a~~~~-~vl~ld~~~ 141 (350)
++|.+..-+....+. .. ...+.+.+.+ .-+|+++-+. ....+| .+++||
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLD--- 955 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLD--- 955 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEec---
Confidence 677766554321111 10 1112222222 1234443321 113678 678999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccH-HHHHHHHHHHHHHhhc-CCccccCCCChhHHHHHHHhh
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQL-KIEHELCQRVKAWLQD-GKDVRLGDWKAADIEILNTFQ 218 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~-~~~~~l~~~i~~~L~~-g~~~~~~~~t~~~~e~i~~~~ 218 (350)
||++++|-.....+...++. +....+.+.- +-|+. ..+-+..|++ -+|.. |+.+|.|++.+....++ +|+
T Consensus 956 EPTSGLDsqaA~~i~~~lrk----la~tGqtIlC-TIHQPS~~ife~FD~L-LLLkrGGqtVY~G~lG~~s~~li-~YF 1027 (1391)
T KOG0065|consen 956 EPTSGLDSQAAAIVMRFLRK----LADTGQTILC-TIHQPSIDIFEAFDEL-LLLKRGGQTVYFGPLGENSSKLI-EYF 1027 (1391)
T ss_pred CCCCCccHHHHHHHHHHHHH----HHhcCCeEEE-EecCCcHHHHHHHhHH-HHHhcCCeEEEecCcccccHHHH-HHH
Confidence 99999999885444433222 2111111100 01443 3466778888 56655 67788888876655444 454
No 419
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.80 E-value=1.9e-08 Score=89.30 Aligned_cols=144 Identities=14% Similarity=0.138 Sum_probs=78.4
Q ss_pred ccccccccCCc-EEEEEcCCCCcHHHHHHHHH--------cCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCC
Q 018809 15 RPILGRFSSHL-KIGIVGLPNVGKSTLFNTLT--------KLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85 (350)
Q Consensus 15 ~~~~~~i~~g~-~igliG~ngaGKSTL~n~L~--------g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~ 85 (350)
-+.+..+.+|+ +++|.||||+|||||++++. |.. -|....+.+. +
T Consensus 18 ~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~-----------vp~~~~~~~~-----~---------- 71 (200)
T cd03280 18 VPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLP-----------IPAAEGSSLP-----V---------- 71 (200)
T ss_pred EcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCC-----------ccccccccCc-----C----------
Confidence 46777888986 69999999999999999998 442 1211111111 0
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHH-HHHHHHH
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLK-DIEFMER 164 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~-~l~~l~~ 164 (350)
.+ ++....+....... .+ ..+...++. ...++++..+|+++++| ||..++|......+.. .++.+
T Consensus 72 ~~---~~~~~lg~~~~l~~--~~-s~fs~g~~~---~~~i~~~~~~p~llllD---Ep~~glD~~~~~~i~~~~l~~l-- 137 (200)
T cd03280 72 FE---NIFADIGDEQSIEQ--SL-STFSSHMKN---IARILQHADPDSLVLLD---ELGSGTDPVEGAALAIAILEEL-- 137 (200)
T ss_pred cc---EEEEecCchhhhhc--Cc-chHHHHHHH---HHHHHHhCCCCcEEEEc---CCCCCCCHHHHHHHHHHHHHHH--
Confidence 00 11111111111111 11 112222222 23444556789999999 9999999987644432 22221
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcccc
Q 018809 165 RIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL 203 (350)
Q Consensus 165 ~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~ 203 (350)
......+... +|+ .++..+++++ ..+.+|...+.
T Consensus 138 --~~~~~~vi~~-tH~-~~l~~~~d~~-~~l~~g~l~~~ 171 (200)
T cd03280 138 --LERGALVIAT-THY-GELKAYAYKR-EGVENASMEFD 171 (200)
T ss_pred --HhcCCEEEEE-CCH-HHHHHHHhcC-CCeEEEEEEEe
Confidence 1111111122 486 5677889988 67777776543
No 420
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.78 E-value=1.3e-08 Score=92.24 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=29.1
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHH-HHHH
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLF-NTLT 45 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~-n~L~ 45 (350)
+.-+.+++++++|+++||+|+||||||||+ ..+.
T Consensus 9 ~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~ 43 (226)
T cd03270 9 HNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY 43 (226)
T ss_pred hccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 455789999999999999999999999995 4443
No 421
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.78 E-value=2.7e-09 Score=105.62 Aligned_cols=87 Identities=26% Similarity=0.287 Sum_probs=65.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~~ 104 (350)
+++|+|+||+|||||||.|+|...++ +++|++|+.+..+.+.+.|. .+.++||||+......
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~-----------------~~~liDTpG~~~~~~~ 63 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR-----------------EFILIDTGGIEEDDDG 63 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe-----------------EEEEEECCCCCCcchh
Confidence 47999999999999999999987654 89999999999998888763 4789999998532211
Q ss_pred -CccccchHHHHHHHHHHHHHHHhhc
Q 018809 105 -GQGLGNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 105 -~~~~~~~~l~~l~~~d~~l~vv~a~ 129 (350)
...+.......++.+|++++|+|+.
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~ 89 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGR 89 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCC
Confidence 1122334455667788887777763
No 422
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.76 E-value=5.1e-09 Score=92.62 Aligned_cols=60 Identities=18% Similarity=0.167 Sum_probs=48.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCC--CCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPAEN--FPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~~~--~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
.++|+|++|+|||||+|.|+|.....+. .+.+|..+..+...+.|. ++.++||||+....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~i~viDTPG~~d~~ 63 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGR-----------------RVNVIDTPGLFDTS 63 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCe-----------------EEEEEECcCCCCcc
Confidence 5899999999999999999999765533 567788888887777653 58999999998653
No 423
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.75 E-value=1.7e-08 Score=96.18 Aligned_cols=178 Identities=19% Similarity=0.230 Sum_probs=107.0
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-------------h
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------------Q 78 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-------------~ 78 (350)
.+-+.+++.+..|+.++|||.+|||||-..+.++++-.. |. ...-+|.|.++|+++-..+ .
T Consensus 24 ~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~----~~--~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~M 97 (534)
T COG4172 24 EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS----PA--AAHPSGSILFDGEDLLAASERQLRGVRGNKIGM 97 (534)
T ss_pred EeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCC----Cc--ccCccceeEEcChhhhcCCHHHHhhhcccceEE
Confidence 445788999999999999999999999999999998531 11 1234789999997653222 1
Q ss_pred hccCCCC--CCcc---eeeeeecccccccccCccccchHHHHHHHHHH--------------------HHHHHhhc-CCC
Q 018809 79 LFKPKSA--VPAF---LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG--------------------IFHVLRAF-EDP 132 (350)
Q Consensus 79 ~~~~~~~--~~~~---l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~--------------------~l~vv~a~-~~~ 132 (350)
+|+.... .|-. -++.+...++++..... ...+.++.++.+.. -+.++-|+ .+|
T Consensus 98 IFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~-Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P 176 (534)
T COG4172 98 IFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAA-ARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEP 176 (534)
T ss_pred EecccccccCcHhHHHHHHHHHHHHHhcccHHH-HHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCC
Confidence 2332110 0000 01111111121111000 00011111111100 03455555 789
Q ss_pred ceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 133 DIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 133 ~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
++++-| ||+..+|+--+..++..+..+++.+. ..+..- +|++.-+..+.|+| .+|..|+++..+
T Consensus 177 ~lLIAD---EPTTALDVtvQaQIL~Ll~~Lq~~~g---Ma~lfI-THDL~iVr~~ADrV-~VM~~G~ivE~~ 240 (534)
T COG4172 177 DLLIAD---EPTTALDVTVQAQILDLLKELQAELG---MAILFI-THDLGIVRKFADRV-YVMQHGEIVETG 240 (534)
T ss_pred CeEeec---CCcchhhhhhHHHHHHHHHHHHHHhC---cEEEEE-eccHHHHHHhhhhE-EEEeccEEeecC
Confidence 999999 99999999888777777666655432 111111 49999999999999 999999887554
No 424
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=5.2e-09 Score=100.26 Aligned_cols=44 Identities=30% Similarity=0.393 Sum_probs=37.2
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEe
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI 68 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~ 68 (350)
-..+.+.|....+|+||||||+|||||++.|+|. +.|+.|...-
T Consensus 603 FkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gk-----------l~P~~GE~RK 646 (807)
T KOG0066|consen 603 FKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGK-----------LDPNDGELRK 646 (807)
T ss_pred hhcccccccccceeEEECCCCccHHHHHHHHhcC-----------CCCCcchhhc
Confidence 3456667778889999999999999999999998 7899887543
No 425
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.68 E-value=2e-08 Score=89.04 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=28.6
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..++.++.+| +++|+||||||||||+++|.|.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 3566678899 9999999999999999999987
No 426
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=5.3e-08 Score=93.20 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=48.9
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC 77 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~ 77 (350)
|--.++++.++.|..++++|+.|+||||+.+.|... .++++|.|.++|++++...
T Consensus 277 ~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRF-----------yD~~sG~I~id~qdir~vt 331 (497)
T COG5265 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRF-----------YDVNSGSITIDGQDIRDVT 331 (497)
T ss_pred hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHH-----------hCCcCceEEEcchhHHHhH
Confidence 334678889999999999999999999999999999 6999999999999876543
No 427
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.66 E-value=1.1e-08 Score=101.44 Aligned_cols=87 Identities=26% Similarity=0.267 Sum_probs=66.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~~ 104 (350)
+++|+|.+|+|||||+|.|+|.... ++++|++|.....+.+.+.|. .+.++|+||+......
T Consensus 3 ~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~-----------------~~~liDT~G~~~~~~~ 65 (435)
T PRK00093 3 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGR-----------------EFILIDTGGIEPDDDG 65 (435)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCc-----------------EEEEEECCCCCCcchh
Confidence 6899999999999999999998764 488999999999998888763 4789999998752210
Q ss_pred -CccccchHHHHHHHHHHHHHHHhhc
Q 018809 105 -GQGLGNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 105 -~~~~~~~~l~~l~~~d~~l~vv~a~ 129 (350)
...+.......++.+|++++|+|+.
T Consensus 66 ~~~~~~~~~~~~~~~ad~il~vvd~~ 91 (435)
T PRK00093 66 FEKQIREQAELAIEEADVILFVVDGR 91 (435)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 1112233455677888888888774
No 428
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.63 E-value=4.7e-08 Score=84.77 Aligned_cols=56 Identities=30% Similarity=0.524 Sum_probs=44.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~-~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
....++++|.||+|||||+|+|+|... .++++|++|...... .+. .++.++|+||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~--~~~------------------~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEV--HLD------------------KKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEE--EeC------------------CCEEEEECcCC
Confidence 346899999999999999999999876 558999999865433 222 24789999985
No 429
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.63 E-value=9.9e-09 Score=98.96 Aligned_cols=37 Identities=32% Similarity=0.548 Sum_probs=33.7
Q ss_pred cccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceE
Q 018809 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEAR 65 (350)
Q Consensus 18 ~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~ 65 (350)
.|.+..|+++|++||||-|||||.++|+|. ++|+.|.
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~-----------ikPdeg~ 397 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGV-----------IKPDEGS 397 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhcc-----------ccCCCCC
Confidence 467888999999999999999999999999 7888885
No 430
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.63 E-value=1.9e-08 Score=100.89 Aligned_cols=88 Identities=24% Similarity=0.289 Sum_probs=65.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~ 103 (350)
-+|+|+|+||+|||||||.|+|.... +++.|++|.+...+.+.+.|. .+.++|++|+.....
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~-----------------~~~l~DT~G~~~~~~ 101 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR-----------------RFTVVDTGGWEPDAK 101 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc-----------------EEEEEeCCCcCCcch
Confidence 47999999999999999999998654 488999999888888877753 378999999763221
Q ss_pred c-CccccchHHHHHHHHHHHHHHHhhc
Q 018809 104 E-GQGLGNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 104 ~-~~~~~~~~l~~l~~~d~~l~vv~a~ 129 (350)
. ...+.......++.+|++++|+|+.
T Consensus 102 ~~~~~~~~~~~~~~~~aD~il~VvD~~ 128 (472)
T PRK03003 102 GLQASVAEQAEVAMRTADAVLFVVDAT 128 (472)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 1 1112223344577888888888875
No 431
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.62 E-value=8.3e-09 Score=86.95 Aligned_cols=56 Identities=41% Similarity=0.581 Sum_probs=48.0
Q ss_pred EEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 29 liG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
|+|.+|+|||||+|.++|....++++|++|.....+.+.+++. .+.++|+||....
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~liDtpG~~~~ 56 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGK-----------------EIEIVDLPGTYSL 56 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCe-----------------EEEEEECCCcccc
Confidence 5899999999999999998766688999999999888887652 4789999998643
No 432
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.62 E-value=9.3e-09 Score=86.35 Aligned_cols=57 Identities=35% Similarity=0.370 Sum_probs=45.4
Q ss_pred EEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 28 GIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 28 gliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
+++|.+|+|||||+|.|++.... .++.|++|.......+.+.+ ..+.++|+||....
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~DtpG~~~~ 58 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG-----------------REFILIDTGGIEPD 58 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC-----------------eEEEEEECCCCCCc
Confidence 58999999999999999998643 37788888877776666654 24789999998654
No 433
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.61 E-value=2.7e-08 Score=89.22 Aligned_cols=59 Identities=10% Similarity=0.204 Sum_probs=38.2
Q ss_pred CCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcC
Q 018809 131 DPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (350)
Q Consensus 131 ~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g 198 (350)
+|+++++| ||+..+|....+.+...+..+.+ + ...+ .-.+|+...+..+++++ .++++|
T Consensus 151 ~~~~lllD---Ep~~~lD~~~~~~~~~~l~~~~~---~-~~ti-i~itH~~~~~~~~~~~i-~~~~~~ 209 (213)
T cd03279 151 RLEALFID---EGFGTLDPEALEAVATALELIRT---E-NRMV-GVISHVEELKERIPQRL-EVIKTP 209 (213)
T ss_pred CCCEEEEe---CCcccCCHHHHHHHHHHHHHHHh---C-CCEE-EEEECchHHHHhhCcEE-EEEecC
Confidence 67899999 99999999886555444332211 0 1111 11249998888888887 666655
No 434
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.61 E-value=6.8e-08 Score=97.48 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=38.5
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIP 69 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~ 69 (350)
-++.+.++++|+.+-|.|+||||||||+++|+|+. +--+|.|..+
T Consensus 409 l~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW-----------P~g~G~I~~P 453 (604)
T COG4178 409 LSELNFEVRPGERLLITGESGAGKTSLLRALAGLW-----------PWGSGRISMP 453 (604)
T ss_pred eccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC-----------ccCCCceecC
Confidence 36788889999999999999999999999999994 3345777666
No 435
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.60 E-value=4.3e-08 Score=83.41 Aligned_cols=61 Identities=28% Similarity=0.381 Sum_probs=48.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
.+++++|.+|+|||||+|.|++.... ..+.|++|.....+.+...+. .+.++|+||+....
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~iiDtpG~~~~~ 64 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK-----------------KYTLIDTAGIRRKG 64 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCe-----------------eEEEEECCCCcccc
Confidence 46899999999999999999997643 367888888777676666542 36899999987553
No 436
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.59 E-value=2e-08 Score=84.60 Aligned_cols=61 Identities=33% Similarity=0.326 Sum_probs=44.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
..+++++|++|||||||+|.++|..... ++.+.+|.....+.....+ ..+.++|+||+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~liDtpG~~~~ 64 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDD-----------------AQIIFVDTPGIHKP 64 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCC-----------------eEEEEEECCCCCcc
Confidence 3579999999999999999999986543 5566666655555443332 24789999998654
No 437
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.59 E-value=6.8e-08 Score=85.81 Aligned_cols=28 Identities=29% Similarity=0.245 Sum_probs=25.5
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+..|++++|+||||+|||||++++.|.
T Consensus 21 ~l~~g~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 21 DMEKKNGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred EEcCCcEEEEECCCCCChHHHHHHHHHH
Confidence 4667899999999999999999999986
No 438
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.59 E-value=9.1e-08 Score=81.51 Aligned_cols=56 Identities=27% Similarity=0.431 Sum_probs=42.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~-~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
.+..++++|+||+|||||+|+|.|... .+++.|++|.... .+..+ ..+.++|+||+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQ--YITLM------------------KRIYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEE--EEEcC------------------CCEEEEECcCC
Confidence 356788999999999999999999766 4488999886532 23222 23789999985
No 439
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.58 E-value=9.1e-08 Score=81.68 Aligned_cols=58 Identities=31% Similarity=0.438 Sum_probs=48.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
.++++|++|+|||||+|.+++....++++|++|..+..+.+.+.+ ..++++|+||...
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY-----------------LRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc-----------------eEEEEEECCCcCC
Confidence 579999999999999999999877777889999888887766543 2489999999753
No 440
>PRK03003 GTP-binding protein Der; Reviewed
Probab=98.56 E-value=3.7e-08 Score=98.74 Aligned_cols=87 Identities=25% Similarity=0.412 Sum_probs=63.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
..+++|+|+||+|||||+|.|+|.... ++++|+||.++....+.++|. .+.++|+||+.+..
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~-----------------~~~l~DTaG~~~~~ 273 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK-----------------TWRFVDTAGLRRRV 273 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE-----------------EEEEEECCCccccc
Confidence 468999999999999999999998754 589999999998888888763 36799999986543
Q ss_pred ccCccccchH------HHHHHHHHHHHHHHhhc
Q 018809 103 HEGQGLGNSF------LSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 103 ~~~~~~~~~~------l~~l~~~d~~l~vv~a~ 129 (350)
... .+..+ ...++.+|+++.|+|+.
T Consensus 274 ~~~--~~~e~~~~~~~~~~i~~ad~vilV~Da~ 304 (472)
T PRK03003 274 KQA--SGHEYYASLRTHAAIEAAEVAVVLIDAS 304 (472)
T ss_pred ccc--chHHHHHHHHHHHHHhcCCEEEEEEeCC
Confidence 221 11111 12345667776666654
No 441
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.54 E-value=8.4e-08 Score=84.35 Aligned_cols=56 Identities=29% Similarity=0.351 Sum_probs=44.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC---------CCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeee
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLA---------IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIH 93 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~---------~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~ 93 (350)
.+..++++|.+|+|||||+|+|.+.. ..+++.|+||+.+....+. ..+.++
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~--------------------~~~~~~ 185 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG--------------------NGKKLY 185 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC--------------------CCCEEE
Confidence 45689999999999999999999854 2457899999988655431 136899
Q ss_pred eeccc
Q 018809 94 DIAGL 98 (350)
Q Consensus 94 D~~g~ 98 (350)
|+||+
T Consensus 186 DtPG~ 190 (190)
T cd01855 186 DTPGI 190 (190)
T ss_pred eCcCC
Confidence 99996
No 442
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.53 E-value=3.5e-08 Score=83.56 Aligned_cols=58 Identities=29% Similarity=0.358 Sum_probs=40.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC---CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA---ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~---~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
+.++++|.+|||||||+|.|+|..... ...+++|.......+.+.+ ...++++|+||.
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~~~DtpG~ 61 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS----------------GKRLGFIDVPGH 61 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC----------------CcEEEEEECCCh
Confidence 478999999999999999999864321 1234556555544444431 125889999995
No 443
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.53 E-value=3.4e-08 Score=103.70 Aligned_cols=88 Identities=22% Similarity=0.242 Sum_probs=65.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~ 103 (350)
..|+|+|.||+|||||||.|+|...++ +++|++|.+...+...+.+. .+.++||+|+.....
T Consensus 276 ~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~-----------------~~~liDT~G~~~~~~ 338 (712)
T PRK09518 276 GVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGT-----------------DFKLVDTGGWEADVE 338 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCE-----------------EEEEEeCCCcCCCCc
Confidence 579999999999999999999987644 78999999887777766653 478999999864221
Q ss_pred c-CccccchHHHHHHHHHHHHHHHhhc
Q 018809 104 E-GQGLGNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 104 ~-~~~~~~~~l~~l~~~d~~l~vv~a~ 129 (350)
. ...+..+....++.+|++++|+|+.
T Consensus 339 ~~~~~~~~~~~~~~~~aD~iL~VvDa~ 365 (712)
T PRK09518 339 GIDSAIASQAQIAVSLADAVVFVVDGQ 365 (712)
T ss_pred cHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 1 1122334445677888888888874
No 444
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.53 E-value=1.7e-07 Score=79.76 Aligned_cols=57 Identities=28% Similarity=0.519 Sum_probs=46.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~-~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
..+..++++|.||+|||||+|+|++... .+++.|+||..+....+ + ..+.++|+||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL--D------------------NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe--c------------------CCEEEEECCCC
Confidence 4568899999999999999999999764 56888999988765432 2 24789999985
No 445
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.52 E-value=5.5e-08 Score=96.48 Aligned_cols=90 Identities=27% Similarity=0.321 Sum_probs=64.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
....++|+|.+|+|||||+|+|+|.... +++.|++|+......+...+. .+.++|+||+...
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~-----------------~~~lvDT~G~~~~ 234 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQ-----------------KYTLIDTAGIRRK 234 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCe-----------------eEEEEECCCCCCC
Confidence 4578999999999999999999998754 488999998877666655542 4789999998765
Q ss_pred cccCccc----cchHHHHHHHHHHHHHHHhhc
Q 018809 102 AHEGQGL----GNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 102 ~~~~~~~----~~~~l~~l~~~d~~l~vv~a~ 129 (350)
.+....+ ..+.++.++.+|+++.|+|+.
T Consensus 235 ~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~ 266 (435)
T PRK00093 235 GKVTEGVEKYSVIRTLKAIERADVVLLVIDAT 266 (435)
T ss_pred cchhhHHHHHHHHHHHHHHHHCCEEEEEEeCC
Confidence 4332111 122345566777777777664
No 446
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.51 E-value=2.3e-07 Score=81.16 Aligned_cols=69 Identities=13% Similarity=0.159 Sum_probs=43.4
Q ss_pred CCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 131 DPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 131 ~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
.-.++.|| |-+.|+|++....++.. +++.-+.-..++.. .+|..+..+..-..+ .++..|+++....++
T Consensus 165 PfkVLLLD---EVTVDLDVlARadLLeF---lkeEce~RgatIVY-ATHIFDGLe~Wpthl-~yi~~Gkl~~~l~~~ 233 (291)
T KOG2355|consen 165 PFKVLLLD---EVTVDLDVLARADLLEF---LKEECEQRGATIVY-ATHIFDGLETWPTHL-VYIKSGKLVDNLKYQ 233 (291)
T ss_pred ceeEEEee---eeEeehHHHHHHHHHHH---HHHHHhhcCcEEEE-EeeeccchhhcchhE-EEecCCeeeeccccc
Confidence 45788999 88889999986443332 32222111111111 248888888888888 889999987644443
No 447
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.51 E-value=1.4e-07 Score=82.32 Aligned_cols=59 Identities=31% Similarity=0.272 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLA--IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~--~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
.+--|+++|++|+|||||+|+|+|.+ +.+|..|+.|..++--.+ . ..+.++|+||++.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~--~------------------~~~~lVDlPGYGy 82 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV--D------------------DELRLVDLPGYGY 82 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe--c------------------CcEEEEeCCCccc
Confidence 45678999999999999999999987 466999999988764332 2 2378999999864
Q ss_pred c
Q 018809 101 G 101 (350)
Q Consensus 101 ~ 101 (350)
.
T Consensus 83 A 83 (200)
T COG0218 83 A 83 (200)
T ss_pred c
Confidence 3
No 448
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.50 E-value=1.9e-07 Score=92.42 Aligned_cols=166 Identities=17% Similarity=0.210 Sum_probs=104.0
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH--------hhccCCC--
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC--------QLFKPKS-- 84 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~--------~~~~~~~-- 84 (350)
..++++++.||++||.|.-|||+|=|+++|.|. .++.+|.|.++|+.+.... -.|.|..
T Consensus 276 ~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~-----------~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk 344 (500)
T COG1129 276 RDVSFTVRAGEILGIAGLVGAGRTELARALFGA-----------RPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRK 344 (500)
T ss_pred eCceeEEeCCcEEEEeccccCCHHHHHHHHhCC-----------CcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccc
Confidence 678899999999999999999999999999998 4778999999998643211 1233321
Q ss_pred --CCCcceeeeeecccccc-cccCccccchHHHHHHHHHHH-------------------------HHHHhhc-CCCcee
Q 018809 85 --AVPAFLEIHDIAGLVRG-AHEGQGLGNSFLSHIRAVDGI-------------------------FHVLRAF-EDPDII 135 (350)
Q Consensus 85 --~~~~~l~~~D~~g~~~~-~~~~~~~~~~~l~~l~~~d~~-------------------------l~vv~a~-~~~~vl 135 (350)
.....+.+.++..+... ......+.+.-.+. ..++.. +.+.+.+ .+|+++
T Consensus 345 ~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~-~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vL 423 (500)
T COG1129 345 SEGLVLDMSIAENITLASLRRFSRRGLIDRRKER-ALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVL 423 (500)
T ss_pred cCcCcCCCcHHHheehHhhhhhccccccChHHHH-HHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEE
Confidence 11112233333333200 00000000000000 000000 4466666 789999
Q ss_pred eecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccccHHHHHHHHHHHHHHhhcCCccc
Q 018809 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEK-SMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (350)
Q Consensus 136 ~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~-~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~ 202 (350)
++| ||++++|+=.+..++..+..+.+. .. .+-.| -.+.++..+|||| ..+.+|++..
T Consensus 424 ilD---EPTRGIDVGAK~eIy~li~~lA~~----G~ail~iS--SElpEll~~~DRI-lVm~~Gri~~ 481 (500)
T COG1129 424 ILD---EPTRGIDVGAKAEIYRLIRELAAE----GKAILMIS--SELPELLGLSDRI-LVMREGRIVG 481 (500)
T ss_pred EEC---CCCcCcccchHHHHHHHHHHHHHC----CCEEEEEe--CChHHHHhhCCEE-EEEECCEEEE
Confidence 999 999999999886666655443331 11 11122 5788999999999 9999999875
No 449
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.50 E-value=1.4e-07 Score=83.93 Aligned_cols=33 Identities=24% Similarity=0.108 Sum_probs=28.3
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
-+....+.+|++++|+||||+|||||++++.+.
T Consensus 20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence 444556788999999999999999999999954
No 450
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.49 E-value=9.2e-08 Score=100.52 Aligned_cols=88 Identities=28% Similarity=0.343 Sum_probs=64.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~ 103 (350)
.+++|+|+||+|||||+|.|++.... ++++|+||.++....+.++|. .+.++||||+.+...
T Consensus 451 ~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~-----------------~~~liDTaG~~~~~~ 513 (712)
T PRK09518 451 RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE-----------------DWLFIDTAGIKRRQH 513 (712)
T ss_pred cEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC-----------------EEEEEECCCcccCcc
Confidence 58999999999999999999998764 489999999998888888763 367999999865433
Q ss_pred cCccc----cchHHHHHHHHHHHHHHHhhc
Q 018809 104 EGQGL----GNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 104 ~~~~~----~~~~l~~l~~~d~~l~vv~a~ 129 (350)
...+. ..+....++.+|++++|+|+.
T Consensus 514 ~~~~~e~~~~~r~~~~i~~advvilViDat 543 (712)
T PRK09518 514 KLTGAEYYSSLRTQAAIERSELALFLFDAS 543 (712)
T ss_pred cchhHHHHHHHHHHHHhhcCCEEEEEEECC
Confidence 21110 011123456677777777764
No 451
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.48 E-value=1.2e-07 Score=84.57 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=22.7
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHH
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~ 45 (350)
..+.+| +++|+|+||+|||||+++|.
T Consensus 18 l~~~~g-~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 18 IEFFSP-LTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred EecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 346666 99999999999999999995
No 452
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.46 E-value=1.1e-07 Score=94.07 Aligned_cols=88 Identities=30% Similarity=0.318 Sum_probs=64.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~ 103 (350)
..++++|.+|+|||||+|.|+|.... +++.|+||..+....+...|. .+.++|+||+.+...
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~-----------------~~~liDT~G~~~~~~ 235 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK-----------------KYLLIDTAGIRRKGK 235 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc-----------------EEEEEECCCcccccc
Confidence 57999999999999999999998654 488999999988777777653 478999999875543
Q ss_pred cCccc----cchHHHHHHHHHHHHHHHhhc
Q 018809 104 EGQGL----GNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 104 ~~~~~----~~~~l~~l~~~d~~l~vv~a~ 129 (350)
..... ..+.+..++.+|++++|+|+.
T Consensus 236 ~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~ 265 (429)
T TIGR03594 236 VTEGVEKYSVLRTLKAIERADVVLLVLDAT 265 (429)
T ss_pred chhhHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 22111 122244566777777766653
No 453
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.46 E-value=9.5e-08 Score=79.41 Aligned_cols=59 Identities=24% Similarity=0.307 Sum_probs=45.5
Q ss_pred EEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccc
Q 018809 29 IVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (350)
Q Consensus 29 liG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~ 103 (350)
|+|++|||||||+|.|++.... .++++.+|..+........+ ...+.++|+||+.....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Dt~g~~~~~~ 60 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP----------------LGPVVLIDTPGIDEAGG 60 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC----------------CCcEEEEECCCCCcccc
Confidence 5899999999999999998765 57778888777766655442 13589999999876543
No 454
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.45 E-value=3.4e-07 Score=84.04 Aligned_cols=65 Identities=25% Similarity=0.295 Sum_probs=50.8
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
.......|+++|++|+|||||+|+|+|.... ++.++.+|...........| ..+.++|+||+
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g-----------------~~i~vIDTPGl 89 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG-----------------FKLNIIDTPGL 89 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC-----------------eEEEEEECCCc
Confidence 4556689999999999999999999998763 36777777776665555554 24799999999
Q ss_pred ccc
Q 018809 99 VRG 101 (350)
Q Consensus 99 ~~~ 101 (350)
...
T Consensus 90 ~~~ 92 (249)
T cd01853 90 LES 92 (249)
T ss_pred Ccc
Confidence 754
No 455
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.44 E-value=9.4e-08 Score=83.86 Aligned_cols=58 Identities=31% Similarity=0.276 Sum_probs=41.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLA--IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~--~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
....++|+|.+|+|||||+|.|++.. ..+++.+++|.......+ ...+.++|+||+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~l~l~DtpG~~~ 82 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV--------------------NDKLRLVDLPGYGY 82 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec--------------------CCeEEEeCCCCCCC
Confidence 44679999999999999999999964 344666666654332111 12588999999764
No 456
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.44 E-value=6.1e-07 Score=83.26 Aligned_cols=38 Identities=21% Similarity=0.484 Sum_probs=35.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcch
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l 73 (350)
..++|+|+||||||||+++|+|. ..|..|.+.++|+++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~-----------~~~~~G~i~~~g~~v 149 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARI-----------LSTGISQLGLRGKKV 149 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCc-----------cCCCCceEEECCEEe
Confidence 57899999999999999999999 689999999998765
No 457
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.43 E-value=9e-08 Score=98.25 Aligned_cols=81 Identities=33% Similarity=0.455 Sum_probs=58.4
Q ss_pred cCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccccC--ccc
Q 018809 31 GLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG--QGL 108 (350)
Q Consensus 31 G~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~~~--~~~ 108 (350)
|.||+|||||+|.++|....++|+|++|.+...|.+.++|. .++++|+||........ +..
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~-----------------~i~lvDtPG~~~~~~~s~~e~v 63 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE-----------------DIEIVDLPGIYSLTTFSLEEEV 63 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe-----------------EEEEEECCCccccCccchHHHH
Confidence 89999999999999999887899999999999999988753 47899999986543211 111
Q ss_pred cchHHHHHHHHHHHHHHHhhc
Q 018809 109 GNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 109 ~~~~l~~l~~~d~~l~vv~a~ 129 (350)
...++ ..+.+|+++.|+|+.
T Consensus 64 ~~~~l-~~~~aDvvI~VvDat 83 (591)
T TIGR00437 64 ARDYL-LNEKPDLVVNVVDAS 83 (591)
T ss_pred HHHHH-hhcCCCEEEEEecCC
Confidence 11111 113467777777664
No 458
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=1.6e-07 Score=90.25 Aligned_cols=73 Identities=15% Similarity=0.384 Sum_probs=52.4
Q ss_pred HHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc
Q 018809 123 FHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (350)
Q Consensus 123 l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~ 201 (350)
+.++||+ -.|.+++|| +|++.+|+-. ..|+...++-|.+++.+- +|+...++.+|..| .+|.+.++.
T Consensus 421 vSLARALflEPTLLMLD---EPTNHLDLNA-------VIWLdNYLQgWkKTLLIV-SHDQgFLD~VCtdI-IHLD~qkLh 488 (807)
T KOG0066|consen 421 VSLARALFLEPTLLMLD---EPTNHLDLNA-------VIWLDNYLQGWKKTLLIV-SHDQGFLDSVCTDI-IHLDNQKLH 488 (807)
T ss_pred hhHHHHHhcCceeeeec---CCccccccce-------eeehhhHHhhhhheeEEE-ecccchHHHHHHHH-hhhhhhhhh
Confidence 4456665 789999999 9999888744 233455555566555333 39999999999999 888877765
Q ss_pred c-cCCCC
Q 018809 202 R-LGDWK 207 (350)
Q Consensus 202 ~-~~~~t 207 (350)
+ .|+++
T Consensus 489 yYrGNY~ 495 (807)
T KOG0066|consen 489 YYRGNYT 495 (807)
T ss_pred hhcchHH
Confidence 4 47765
No 459
>PRK04213 GTP-binding protein; Provisional
Probab=98.43 E-value=1.7e-07 Score=82.91 Aligned_cols=55 Identities=33% Similarity=0.371 Sum_probs=43.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.-.++++|++|+|||||+|.|+|.....+..|++|..+.. +.+. .+.++|+||+.
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~~-------------------~~~l~Dt~G~~ 63 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDWG-------------------DFILTDLPGFG 63 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eeec-------------------ceEEEeCCccc
Confidence 3589999999999999999999987666778888876542 2211 37899999974
No 460
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.42 E-value=8.7e-08 Score=88.75 Aligned_cols=89 Identities=30% Similarity=0.474 Sum_probs=68.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
+.-.|++||..|||||||+|+||+......+.-|.|++|+.-...++.. ..+-+.||.||....
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg----------------~~vlltDTvGFisdL 240 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSG----------------NFVLLTDTVGFISDL 240 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCC----------------cEEEEeechhhhhhC
Confidence 4468999999999999999999987666678899999998877776642 236689999998654
Q ss_pred ccCccccchH---HHHHHHHHHHHHHHhhc
Q 018809 103 HEGQGLGNSF---LSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 103 ~~~~~~~~~~---l~~l~~~d~~l~vv~a~ 129 (350)
.. .+...| ++.+..+|+++||+|.+
T Consensus 241 P~--~LvaAF~ATLeeVaeadlllHvvDiS 268 (410)
T KOG0410|consen 241 PI--QLVAAFQATLEEVAEADLLLHVVDIS 268 (410)
T ss_pred cH--HHHHHHHHHHHHHhhcceEEEEeecC
Confidence 32 233333 66777889999988876
No 461
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.40 E-value=1.1e-06 Score=80.28 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
|++++|+||||||||||+++|++.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~~ 46 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRFV 46 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999999843
No 462
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.40 E-value=4.8e-07 Score=84.92 Aligned_cols=61 Identities=33% Similarity=0.446 Sum_probs=48.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~-~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
..+..++++|.||+|||||+|+|+|... .+++.|++|...+ .+.++ .++.++|+||+..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~l~DtPGi~~ 178 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQ--WIKLG------------------KGLELLDTPGILW 178 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEE--EEEeC------------------CcEEEEECCCcCC
Confidence 3556899999999999999999999876 5689999998764 34443 2478999999965
Q ss_pred cc
Q 018809 101 GA 102 (350)
Q Consensus 101 ~~ 102 (350)
..
T Consensus 179 ~~ 180 (287)
T PRK09563 179 PK 180 (287)
T ss_pred CC
Confidence 43
No 463
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.38 E-value=6.1e-07 Score=75.89 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=47.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
+++++|++|+|||||++.+++.....+..|.+|.+.....+.+++.. ..++++|+||.
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~D~~G~ 59 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKT---------------VRLQLWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEE---------------EEEEEEECCCc
Confidence 68999999999999999999987766777777777777777776532 24789999983
No 464
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.35 E-value=1.8e-07 Score=81.34 Aligned_cols=60 Identities=28% Similarity=0.270 Sum_probs=43.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCC-C-CCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLA-I-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~-~-~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
...-.++|+|++|+|||||+|.|++.. . .+++.+++|..+....+ + ..+.++|+||+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~liDtpG~~ 75 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N------------------DGFRLVDLPGYG 75 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C------------------CcEEEEeCCCCc
Confidence 344688999999999999999999974 2 34677777765443221 1 147899999986
Q ss_pred cc
Q 018809 100 RG 101 (350)
Q Consensus 100 ~~ 101 (350)
..
T Consensus 76 ~~ 77 (179)
T TIGR03598 76 YA 77 (179)
T ss_pred cc
Confidence 53
No 465
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.32 E-value=1e-06 Score=82.20 Aligned_cols=60 Identities=33% Similarity=0.451 Sum_probs=47.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~-~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
....++++|.||+|||||+|.|+|... .+++.|++|..+. .+.+. ..+.++|+||+...
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQ--WIKLS------------------DGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceE--EEEeC------------------CCEEEEECCCcccC
Confidence 456899999999999999999999874 5589999998764 44443 24789999999654
Q ss_pred c
Q 018809 102 A 102 (350)
Q Consensus 102 ~ 102 (350)
.
T Consensus 177 ~ 177 (276)
T TIGR03596 177 K 177 (276)
T ss_pred C
Confidence 3
No 466
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.31 E-value=2.5e-07 Score=79.04 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~ 48 (350)
+|+++|++|+|||||+|+|+|..
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~ 25 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNY 25 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999999874
No 467
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.27 E-value=1.4e-06 Score=72.92 Aligned_cols=54 Identities=35% Similarity=0.476 Sum_probs=42.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~-~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.++++|.+|+|||||+|+|++... .+++.|++|.... .+.+++ .+.++||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~--~~~~~~------------------~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQ--TIFLTP------------------TITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceE--EEEeCC------------------CEEEEECCCcC
Confidence 899999999999999999999865 4477787776643 233321 37899999985
No 468
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.26 E-value=3e-06 Score=91.36 Aligned_cols=176 Identities=15% Similarity=0.183 Sum_probs=105.8
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh----hccCCCCC-Ccc
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ----LFKPKSAV-PAF 89 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~----~~~~~~~~-~~~ 89 (350)
.++++-+++|+.+-++||||||||||+++|+|.... ..-..|.|.++|.+...... .|.++..+ ...
T Consensus 132 ~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~--------~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 132 KDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDN--------FLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPE 203 (1391)
T ss_pred cCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcc--------cccCCCceeECCCcccccccCceEEeccccccccce
Confidence 678899999999999999999999999999998421 11234588888876544322 34444432 246
Q ss_pred eeeeeeccccc---ccccC-ccccchHHHHH-HHHHHHHHHHhh-----------------------------c-CCCce
Q 018809 90 LEIHDIAGLVR---GAHEG-QGLGNSFLSHI-RAVDGIFHVLRA-----------------------------F-EDPDI 134 (350)
Q Consensus 90 l~~~D~~g~~~---~~~~~-~~~~~~~l~~l-~~~d~~l~vv~a-----------------------------~-~~~~v 134 (350)
+++.++..+.. ..... .+..++ +.+ ...|.++.+... + ..+.+
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~--e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~ 281 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRR--EKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASI 281 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHH--HHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcce
Confidence 78887776642 11110 111111 111 245556554322 1 23445
Q ss_pred eeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 135 IHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 135 l~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
+..| |+++++|-.+.-.+...++.+.+.. ..+...+--.-..++.++.|+| .+|.+|+.++.|+.+
T Consensus 282 ~~~D---e~t~GLDSsTal~iik~lr~~a~~~---~~t~~vsi~Q~s~~~~~lFD~v-~lL~eG~~iy~Gp~d 347 (1391)
T KOG0065|consen 282 LFWD---EITRGLDSSTAFQIIKALRQLAHIT---GATALVSILQPSPEIYDLFDDV-ILLSEGYQIYQGPRD 347 (1391)
T ss_pred eeee---cccccccHHHHHHHHHHHHHHHhhh---cceEEEEeccCChHHHHhhhhe-eeeeccceEEeccHH
Confidence 6777 8999999988633333332222211 1110001013456788999999 999999999988754
No 469
>PRK09866 hypothetical protein; Provisional
Probab=98.26 E-value=8e-07 Score=89.95 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=31.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCcccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTI 59 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~ 59 (350)
..++|+|++|+|||||+|+|+|..+.. ++.|+||.
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l 105 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL 105 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc
Confidence 688999999999999999999998866 48888887
No 470
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.25 E-value=2.8e-06 Score=76.19 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHH
Q 018809 25 LKIGIVGLPNVGKSTLFNTLT 45 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~ 45 (350)
+++||+|||||||||++++|+
T Consensus 26 ~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 26 SFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 799999999999999999998
No 471
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.25 E-value=4.8e-07 Score=77.08 Aligned_cols=57 Identities=26% Similarity=0.322 Sum_probs=40.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC----CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPA----ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~----~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.++++|++|+|||||++.|++..... ...+.+|...+.+.+.+++ ..+.++|++|..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~ 61 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGN-----------------ARLKFWDLGGQE 61 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECC-----------------EEEEEEECCCCh
Confidence 37899999999999999999864321 1233445555566666553 357899999863
No 472
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.24 E-value=1.2e-06 Score=80.84 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=27.4
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHH
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTL 44 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L 44 (350)
++++-+|+.|..++|.|.+|||||||++.+
T Consensus 12 ~~v~~~ip~g~~~~vtGvSGsGKStL~~~~ 41 (261)
T cd03271 12 KNIDVDIPLGVLTCVTGVSGSGKSSLINDT 41 (261)
T ss_pred CCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence 577788999999999999999999999866
No 473
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.23 E-value=2.4e-06 Score=70.76 Aligned_cols=59 Identities=36% Similarity=0.336 Sum_probs=45.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
.+++++|++|+|||||++.+++........|++|.......+.+++.. ..+.++|++|.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKT---------------YKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEE---------------EEEEEEECCCc
Confidence 368999999999999999999987444667777777666656665421 24788999993
No 474
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.23 E-value=5.9e-07 Score=77.03 Aligned_cols=59 Identities=27% Similarity=0.255 Sum_probs=38.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
.+++++|++|+|||||++.+++........|..+.+.....+.+.+. ...++++|++|.
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~ 63 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGK---------------QIKLQIWDTAGQ 63 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCE---------------EEEEEEEECCCc
Confidence 47899999999999999999987543332222223333333444432 135789999983
No 475
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.22 E-value=2.2e-06 Score=80.50 Aligned_cols=61 Identities=28% Similarity=0.358 Sum_probs=47.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
..++.|+|.+|+||||++|.|+|..... +.++.+|..+......+.| ..+.++||||+...
T Consensus 38 ~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G-----------------~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 38 SLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG-----------------FTLNIIDTPGLIEG 99 (313)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-----------------eEEEEEECCCCCch
Confidence 4589999999999999999999998744 6776666666554444444 35899999998764
No 476
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.22 E-value=1.3e-06 Score=77.41 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
..++|+|+||+|||||+|+|+|..
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~ 25 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVG 25 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccC
Confidence 368999999999999999999974
No 477
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.21 E-value=5.5e-06 Score=74.83 Aligned_cols=31 Identities=19% Similarity=0.068 Sum_probs=26.4
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHH
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~ 45 (350)
+.++...+.+.+++|.|||++||||+++++.
T Consensus 21 ~~~~~~~~~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 21 NDVTLTRGKSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred eeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence 4455566788999999999999999999977
No 478
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.21 E-value=6e-07 Score=74.88 Aligned_cols=58 Identities=22% Similarity=0.293 Sum_probs=37.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
+++++|++|+|||||+|.+++........|..+.......+.+++. ...+.++|++|.
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~ 59 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGK---------------TVKLQIWDTAGQ 59 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCE---------------EEEEEEEecCCh
Confidence 5899999999999999999988654432232222222223333221 134788999985
No 479
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.21 E-value=7.9e-07 Score=75.67 Aligned_cols=60 Identities=18% Similarity=0.133 Sum_probs=40.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.++|+|++|+|||||+|+|++........+++|.......+.... .....+.++|+||..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--------------~~~~~~~iiDtpG~~ 61 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV--------------LKIPGITFIDTPGHE 61 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc--------------CCcceEEEEeCCCcH
Confidence 489999999999999999998765444445555544434443320 001347899999953
No 480
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.20 E-value=1.7e-06 Score=82.46 Aligned_cols=60 Identities=30% Similarity=0.463 Sum_probs=47.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~-~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
...+++||-||+|||||+|.|.|... .++++|++|..-+ .|.+. ..+.++|+||+....
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q--~i~~~------------------~~i~LlDtPGii~~~ 191 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ--WIKLD------------------DGIYLLDTPGIIPPK 191 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE--EEEcC------------------CCeEEecCCCcCCCC
Confidence 47899999999999999999999987 4499999986533 23332 247899999998654
Q ss_pred c
Q 018809 103 H 103 (350)
Q Consensus 103 ~ 103 (350)
.
T Consensus 192 ~ 192 (322)
T COG1161 192 F 192 (322)
T ss_pred c
Confidence 3
No 481
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.19 E-value=2.9e-06 Score=72.12 Aligned_cols=59 Identities=25% Similarity=0.332 Sum_probs=42.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
-+++++|++|||||||++.+++........|..+.+.....+.+++. ...++++|++|.
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~ 62 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGK---------------TIKAQIWDTAGQ 62 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE---------------EEEEEEEeCCCh
Confidence 36899999999999999999988655444455554444445555543 134789999985
No 482
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.19 E-value=1.5e-06 Score=76.19 Aligned_cols=44 Identities=32% Similarity=0.427 Sum_probs=38.0
Q ss_pred ccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCc
Q 018809 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (350)
Q Consensus 17 ~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~ 71 (350)
+...++.|..++|+|+||||||||+++|+|. .+|..|.+.+.+.
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~-----------i~~~~~~i~ied~ 61 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAF-----------IPPDERIITIEDT 61 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhh-----------cCCCCCEEEECCc
Confidence 3455788999999999999999999999998 5788898888763
No 483
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.19 E-value=4e-07 Score=81.35 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAI 49 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~ 49 (350)
+++|+|.+|+|||||++.|++...
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~ 24 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSK 24 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcC
Confidence 479999999999999999987643
No 484
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.18 E-value=1.6e-06 Score=83.88 Aligned_cols=59 Identities=29% Similarity=0.406 Sum_probs=45.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC------CCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeec
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI------PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~------~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~ 96 (350)
.|..+.++|.+|+|||||+|+|++... .++++|+||+..... .++ ....++|||
T Consensus 153 ~~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~--~~~------------------~~~~l~DtP 212 (360)
T TIGR03597 153 NKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEI--PLD------------------DGHSLYDTP 212 (360)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEE--EeC------------------CCCEEEECC
Confidence 467899999999999999999998532 458999999876533 232 135799999
Q ss_pred ccccc
Q 018809 97 GLVRG 101 (350)
Q Consensus 97 g~~~~ 101 (350)
|+...
T Consensus 213 G~~~~ 217 (360)
T TIGR03597 213 GIINS 217 (360)
T ss_pred CCCCh
Confidence 98753
No 485
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.17 E-value=7.2e-07 Score=81.32 Aligned_cols=89 Identities=18% Similarity=0.258 Sum_probs=57.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
....+-|+|..|||||+|+|+|.+.... ++..+-+|..+..-...+++ ..+.++|+||++.+
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-----------------~~l~lwDtPG~gdg 100 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-----------------ENLVLWDTPGLGDG 100 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-----------------cceEEecCCCcccc
Confidence 3455669999999999999999965442 34444455444333333333 35899999999987
Q ss_pred cccCccccchHHHHHHHHHHHHHHHhh
Q 018809 102 AHEGQGLGNSFLSHIRAVDGIFHVLRA 128 (350)
Q Consensus 102 ~~~~~~~~~~~l~~l~~~d~~l~vv~a 128 (350)
..+.......+.+.+...|+++.++++
T Consensus 101 ~~~D~~~r~~~~d~l~~~DLvL~l~~~ 127 (296)
T COG3596 101 KDKDAEHRQLYRDYLPKLDLVLWLIKA 127 (296)
T ss_pred hhhhHHHHHHHHHHhhhccEEEEeccC
Confidence 665544445556666666655444444
No 486
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.17 E-value=9e-06 Score=74.74 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
...++|||+||||||||+.+|.+.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~l 48 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFV 48 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999987
No 487
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.16 E-value=1.2e-06 Score=77.79 Aligned_cols=60 Identities=22% Similarity=0.375 Sum_probs=38.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
+++|+|.+|+|||||++.+++........|.++.....-.+.++|.. ..+.++|++|...
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~---------------~~l~i~Dt~G~~~ 61 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRV---------------YDLHILDVPNMQR 61 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEE---------------EEEEEEeCCCccc
Confidence 68999999999999999999864332223333222222234445431 2478999999754
No 488
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.16 E-value=1.3e-05 Score=78.48 Aligned_cols=168 Identities=20% Similarity=0.267 Sum_probs=106.5
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcch-hH--------HHhhccC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF-EW--------LCQLFKP 82 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l-~~--------l~~~~~~ 82 (350)
+.-+.+++.++.|+++||.|-.|-|-|-|+.+|+|+ .++.+|.|.++|.++ .. ....|.|
T Consensus 272 ~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGl-----------r~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VP 340 (501)
T COG3845 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGL-----------RKPASGRILLNGKDVLGRLSPRERRRLGLAYVP 340 (501)
T ss_pred ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCC-----------CccCCceEEECCEeccccCCHHHHHhcCCccCC
Confidence 345778999999999999999999999999999999 567789999999875 11 1113444
Q ss_pred CCC----CCcceeeeeeccccccccc---Cccccc-----h-HHHHHHHHHHH------------------HHHHhhc-C
Q 018809 83 KSA----VPAFLEIHDIAGLVRGAHE---GQGLGN-----S-FLSHIRAVDGI------------------FHVLRAF-E 130 (350)
Q Consensus 83 ~~~----~~~~l~~~D~~g~~~~~~~---~~~~~~-----~-~l~~l~~~d~~------------------l~vv~a~-~ 130 (350)
... .-..+++.++.-+...... ..++.+ + ..+.++..|+- +.+.|=+ .
T Consensus 341 edR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~ 420 (501)
T COG3845 341 EDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELAR 420 (501)
T ss_pred hhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhcc
Confidence 221 1123566666555432211 111111 1 11112222221 2344444 6
Q ss_pred CCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----cccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 131 DPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-----DKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 131 ~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~-----~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
+|+++++. .|+.++|+-..+.+...+ ......++ +.+++++..++||| ..+.+|++....
T Consensus 421 ~p~lLI~~---qPTrGLDvgA~~~I~~~l----------~e~r~~G~AVLLiS~dLDEil~lsDrI-aVi~~Gri~~~~ 485 (501)
T COG3845 421 RPDLLIAA---QPTRGLDVGAIEFIHERL----------LELRDAGKAVLLISEDLDEILELSDRI-AVIYEGRIVGIV 485 (501)
T ss_pred CCCEEEEc---CCCccccHHHHHHHHHHH----------HHHHhcCCEEEEEehhHHHHHHhhhee-eeeeCCceeccc
Confidence 78999887 999999998754443322 22222222 27899999999999 999999987543
No 489
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.16 E-value=2e-06 Score=76.55 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~ 48 (350)
.+||+|++|+|||||+.+|++..
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~ 24 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVW 24 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999873
No 490
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.15 E-value=3.8e-06 Score=75.29 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=41.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCC--CCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPAE--NFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~~--~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
++.|+|++||||||+.|.|+|.....+ ....+|.........+.|. .+.++||||+....
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~-----------------~v~VIDTPGl~d~~ 63 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGR-----------------QVTVIDTPGLFDSD 63 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTE-----------------EEEEEE--SSEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecce-----------------EEEEEeCCCCCCCc
Confidence 578999999999999999999976432 2334566666666677764 48999999996543
No 491
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.14 E-value=1.2e-06 Score=74.71 Aligned_cols=59 Identities=20% Similarity=0.276 Sum_probs=37.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
.++.++|++|+|||||++.+++........|..+.......+.+.+. ...++++|++|.
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~ 61 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGK---------------TIKLQIWDTAGQ 61 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE---------------EEEEEEEECCCc
Confidence 46899999999999999999976433322222222222233444432 135789999984
No 492
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.14 E-value=4.6e-06 Score=71.47 Aligned_cols=51 Identities=33% Similarity=0.500 Sum_probs=37.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcce----EEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA----RVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G----~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
..+++|+|+||||||||++.++|... ++..|+.| .+.+.+ ..+.++|++|.
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~-------~~~~~t~g~~~~~i~~~~-----------------~~~~~~D~~G~ 68 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDI-------SHITPTQGFNIKTVQSDG-----------------FKLNVWDIGGQ 68 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCC-------cccCCCCCcceEEEEECC-----------------EEEEEEECCCC
Confidence 57899999999999999999999732 22344555 444443 24788999874
No 493
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.14 E-value=8.4e-06 Score=81.11 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=38.1
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~ 70 (350)
.+++.+|+.|..+-|.||||||||+||++|.|+. +..+|.+..+.
T Consensus 452 e~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW-----------p~~~G~l~k~~ 496 (659)
T KOG0060|consen 452 ENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW-----------PSTGGKLTKPT 496 (659)
T ss_pred eeeeeEecCCCeEEEECCCCCchhHHHHHHhccc-----------ccCCCeEEecc
Confidence 3477889999999999999999999999999994 44677776653
No 494
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.13 E-value=2.7e-06 Score=67.58 Aligned_cols=32 Identities=22% Similarity=0.231 Sum_probs=28.6
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHH
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~ 45 (350)
-.+++..+.+|+.++|+||+|||||||++++.
T Consensus 5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 35677789999999999999999999999976
No 495
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.12 E-value=2.5e-06 Score=84.06 Aligned_cols=46 Identities=13% Similarity=0.072 Sum_probs=38.3
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcce-EEEeCCcch
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA-RVNIPDERF 73 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G-~i~~~~~~l 73 (350)
..++..+..|++++|+||+|||||||++ .|. ..|.+| .|.++|..+
T Consensus 23 ~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l-----------~~~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 23 VKFNKELPSSSLLFLCGSSGDGKSEILA--ENK-----------RKFSEGYEFFLDATHS 69 (504)
T ss_pred hCCceeecCCCEEEEECCCCCCHHHHHh--cCC-----------CCCCCCCEEEECCEEC
Confidence 5677789999999999999999999999 555 356666 799988654
No 496
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.11 E-value=4.8e-06 Score=71.96 Aligned_cols=56 Identities=32% Similarity=0.417 Sum_probs=43.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~-~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
.+..++++|.+|+|||||+|.|++... ..++.|+||..... +.++ ..+.++||||+
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~--~~~~------------------~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQW--IKIS------------------PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEE--EEec------------------CCEEEEECCCC
Confidence 345899999999999999999999765 44788888876433 3332 23789999997
No 497
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.10 E-value=7.5e-06 Score=71.46 Aligned_cols=56 Identities=27% Similarity=0.394 Sum_probs=42.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
...+++|+|++|||||||++.+++.... ....|..+..+.+.+++. .+.++|++|.
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~~~~-----------------~~~l~D~~G~ 73 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTIGNI-----------------KFKTFDLGGH 73 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEECCE-----------------EEEEEECCCC
Confidence 3467799999999999999999986531 233466777787777642 3678999984
No 498
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.10 E-value=3e-06 Score=71.48 Aligned_cols=55 Identities=31% Similarity=0.319 Sum_probs=36.4
Q ss_pred EEEEcCCCCcHHHHHHHHHc--CCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 27 IGIVGLPNVGKSTLFNTLTK--LAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 27 igliG~ngaGKSTL~n~L~g--~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
++++|++|||||||+|.|++ .....++.+++|..... +..+ ..+.++|+||+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~------------------~~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVN------------------DKFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEcc------------------CeEEEecCCCcccc
Confidence 79999999999999999994 33233455555443211 1111 15789999997543
No 499
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.09 E-value=1.8e-06 Score=74.81 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAI 49 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~ 49 (350)
.++++|.+|||||||+|.|++...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~ 24 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTG 24 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcC
Confidence 379999999999999999998854
No 500
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.09 E-value=1.4e-05 Score=71.27 Aligned_cols=34 Identities=26% Similarity=0.123 Sum_probs=29.7
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
-+.++..+..|+.++|+||||+||||+++++++.
T Consensus 19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3556677788899999999999999999999876
Done!