Query 018809
Match_columns 350
No_of_seqs 411 out of 3366
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 06:23:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ni3_A YCHF GTPase, YCHF GTP-b 100.0 3.2E-71 1.1E-75 535.7 24.2 345 1-349 1-352 (392)
2 2ohf_A Protein OLA1, GTP-bindi 100.0 4.9E-70 1.7E-74 526.3 17.2 347 1-349 1-350 (396)
3 1jal_A YCHF protein; nucleotid 100.0 1.3E-66 4.4E-71 498.1 19.2 323 23-349 1-324 (363)
4 2dby_A GTP-binding protein; GD 100.0 2.1E-63 7.1E-68 478.4 23.1 322 25-349 2-329 (368)
5 1wxq_A GTP-binding protein; st 100.0 8.1E-45 2.8E-49 353.1 10.3 308 26-345 2-370 (397)
6 4a9a_A Ribosome-interacting GT 100.0 4.8E-42 1.7E-46 329.8 0.2 265 25-348 73-349 (376)
7 4g1u_C Hemin import ATP-bindin 99.7 1.7E-19 5.7E-24 166.0 -0.6 173 14-205 27-231 (266)
8 3tui_C Methionine import ATP-b 99.7 2.3E-19 8E-24 171.2 -1.9 172 14-205 44-247 (366)
9 3fvq_A Fe(3+) IONS import ATP- 99.7 1.1E-18 3.6E-23 166.5 2.1 173 13-205 19-222 (359)
10 3rlf_A Maltose/maltodextrin im 99.7 6.6E-19 2.2E-23 169.1 -1.7 172 14-205 19-217 (381)
11 3tif_A Uncharacterized ABC tra 99.7 2.2E-18 7.5E-23 155.7 0.7 173 14-206 21-229 (235)
12 1ji0_A ABC transporter; ATP bi 99.7 4.6E-18 1.6E-22 154.1 2.6 171 14-204 22-221 (240)
13 1b0u_A Histidine permease; ABC 99.7 8.7E-19 3E-23 160.9 -2.4 172 14-205 22-236 (262)
14 2olj_A Amino acid ABC transpor 99.7 2.8E-18 9.6E-23 157.5 0.9 172 14-205 40-242 (263)
15 2yyz_A Sugar ABC transporter, 99.7 2.5E-18 8.6E-23 164.2 0.4 173 14-205 19-217 (359)
16 3d31_A Sulfate/molybdate ABC t 99.7 1.8E-18 6.1E-23 164.7 -0.7 173 14-205 16-211 (348)
17 3gfo_A Cobalt import ATP-bindi 99.7 6.1E-19 2.1E-23 162.9 -3.9 175 13-206 23-228 (275)
18 1z47_A CYSA, putative ABC-tran 99.7 1.4E-18 4.6E-23 165.7 -2.8 174 13-205 30-229 (355)
19 2onk_A Molybdate/tungstate ABC 99.7 5.4E-18 1.9E-22 153.6 1.1 172 14-205 15-210 (240)
20 1v43_A Sugar-binding transport 99.7 3.3E-18 1.1E-22 164.1 -0.9 172 14-205 27-225 (372)
21 2it1_A 362AA long hypothetical 99.7 3.2E-18 1.1E-22 163.6 -1.3 173 14-205 19-217 (362)
22 2pcj_A ABC transporter, lipopr 99.7 1.8E-18 6.2E-23 155.2 -3.1 170 14-204 20-221 (224)
23 1g29_1 MALK, maltose transport 99.7 3.7E-18 1.3E-22 164.0 -1.5 172 15-205 20-223 (372)
24 1g6h_A High-affinity branched- 99.7 2.4E-18 8.2E-23 157.5 -2.8 173 14-206 23-237 (257)
25 1vpl_A ABC transporter, ATP-bi 99.7 3.2E-18 1.1E-22 156.5 -2.1 171 14-204 31-228 (256)
26 1oxx_K GLCV, glucose, ABC tran 99.7 2.9E-18 9.9E-23 163.7 -3.0 173 14-205 21-224 (353)
27 2qi9_C Vitamin B12 import ATP- 99.6 8.5E-18 2.9E-22 153.1 -0.5 171 13-204 15-215 (249)
28 3nh6_A ATP-binding cassette SU 99.6 1.5E-17 5.1E-22 155.7 -0.3 169 15-206 71-272 (306)
29 2yz2_A Putative ABC transporte 99.6 6.5E-18 2.2E-22 155.4 -4.5 171 14-204 23-220 (266)
30 2ff7_A Alpha-hemolysin translo 99.6 2.9E-17 1E-21 149.4 -0.4 169 14-205 25-226 (247)
31 2ihy_A ABC transporter, ATP-bi 99.6 3E-18 1E-22 158.7 -7.1 172 14-205 37-246 (279)
32 2ixe_A Antigen peptide transpo 99.6 2.6E-17 8.8E-22 151.8 -2.7 173 13-205 34-239 (271)
33 1mv5_A LMRA, multidrug resista 99.6 3.2E-17 1.1E-21 148.8 -2.7 171 13-205 17-220 (243)
34 2nq2_C Hypothetical ABC transp 99.6 4.7E-17 1.6E-21 148.6 -2.3 165 14-204 21-210 (253)
35 2pjz_A Hypothetical protein ST 99.6 2.5E-17 8.7E-22 151.1 -4.9 166 14-205 21-209 (263)
36 3b5x_A Lipid A export ATP-bind 99.5 1.1E-15 3.9E-20 155.3 2.8 168 13-205 358-561 (582)
37 1sgw_A Putative ABC transporte 99.5 4.2E-15 1.4E-19 132.2 6.1 160 13-191 24-203 (214)
38 2ghi_A Transport protein; mult 99.5 3.1E-16 1E-20 143.7 -1.5 165 14-205 36-236 (260)
39 3iev_A GTP-binding protein ERA 99.5 7.5E-16 2.6E-20 144.5 -0.2 197 23-237 9-229 (308)
40 2d2e_A SUFC protein; ABC-ATPas 99.5 9.2E-17 3.1E-21 146.4 -7.0 174 14-205 19-227 (250)
41 3qf4_B Uncharacterized ABC tra 99.5 1.9E-15 6.5E-20 154.0 1.1 173 12-206 369-573 (598)
42 2yl4_A ATP-binding cassette SU 99.5 1.6E-15 5.5E-20 154.6 -0.2 170 15-207 361-566 (595)
43 2pze_A Cystic fibrosis transme 99.5 1.7E-15 5.8E-20 136.2 -0.6 158 13-205 23-212 (229)
44 3qf4_A ABC transporter, ATP-bi 99.5 2.2E-15 7.6E-20 153.2 -0.9 168 13-206 358-561 (587)
45 3b60_A Lipid A export ATP-bind 99.5 1.7E-15 5.7E-20 154.0 -2.3 168 13-205 358-561 (582)
46 1udx_A The GTP-binding protein 99.5 1.3E-14 4.5E-19 141.1 4.0 99 13-127 146-244 (416)
47 2zu0_C Probable ATP-dependent 99.5 8.6E-16 3E-20 141.3 -4.3 175 14-206 36-249 (267)
48 1tq4_A IIGP1, interferon-induc 99.5 4.2E-15 1.4E-19 144.4 -0.1 171 15-202 40-258 (413)
49 4a82_A Cystic fibrosis transme 99.5 1.5E-15 5.1E-20 154.3 -3.9 168 13-206 356-559 (578)
50 3gd7_A Fusion complex of cysti 99.4 2E-15 6.8E-20 145.7 -3.8 170 12-206 35-237 (390)
51 2bbs_A Cystic fibrosis transme 99.4 2.7E-15 9.4E-20 139.4 -3.3 163 13-205 53-241 (290)
52 2cbz_A Multidrug resistance-as 99.4 1.9E-13 6.4E-18 123.5 8.3 161 13-205 20-211 (237)
53 3ozx_A RNAse L inhibitor; ATP 99.4 3.7E-15 1.3E-19 149.8 -4.0 148 19-198 289-462 (538)
54 1wf3_A GTP-binding protein; GT 99.4 3.4E-14 1.1E-18 132.9 1.2 189 25-237 8-221 (301)
55 1ega_A Protein (GTP-binding pr 99.4 5.6E-15 1.9E-19 138.1 -5.8 189 24-237 8-222 (301)
56 1yqt_A RNAse L inhibitor; ATP- 99.3 2E-14 6.9E-19 144.5 -5.1 162 20-206 308-488 (538)
57 3bk7_A ABC transporter ATP-bin 99.3 2.2E-14 7.6E-19 145.9 -4.9 163 19-206 377-558 (607)
58 3ozx_A RNAse L inhibitor; ATP 99.3 2.3E-13 7.9E-18 136.7 1.5 160 20-200 21-215 (538)
59 3g5u_A MCG1178, multidrug resi 99.3 1.3E-13 4.3E-18 151.5 -1.0 168 13-206 405-608 (1284)
60 3g5u_A MCG1178, multidrug resi 99.3 3.3E-13 1.1E-17 148.2 1.0 169 13-205 1048-1252(1284)
61 2eki_A DRG 1, developmentally- 99.3 8.8E-13 3E-17 99.7 2.6 51 298-348 5-60 (93)
62 1lnz_A SPO0B-associated GTP-bi 99.3 1.1E-12 3.9E-17 124.5 2.7 89 25-129 159-247 (342)
63 3j16_B RLI1P; ribosome recycli 99.3 3.6E-13 1.2E-17 136.9 -1.4 76 123-206 476-554 (608)
64 1yqt_A RNAse L inhibitor; ATP- 99.2 1.5E-12 5.3E-17 130.8 2.1 157 14-198 38-234 (538)
65 3bk7_A ABC transporter ATP-bin 99.2 1.4E-12 4.7E-17 132.8 1.6 160 14-198 108-304 (607)
66 3j16_B RLI1P; ribosome recycli 99.2 1.6E-12 5.5E-17 132.2 2.1 70 123-201 230-300 (608)
67 4f4c_A Multidrug resistance pr 99.2 8.6E-12 2.9E-16 137.3 6.3 170 13-206 1094-1299(1321)
68 2iw3_A Elongation factor 3A; a 99.2 2.5E-12 8.5E-17 136.1 1.4 45 15-70 690-734 (986)
69 4f4c_A Multidrug resistance pr 99.2 2.7E-11 9.1E-16 133.4 7.6 169 12-206 432-636 (1321)
70 3ux8_A Excinuclease ABC, A sub 99.0 1.4E-10 4.7E-15 119.7 6.1 73 123-205 211-292 (670)
71 2npi_A Protein CLP1; CLP1-PCF1 99.0 2.5E-11 8.5E-16 119.6 0.1 44 16-70 130-175 (460)
72 2gj8_A MNME, tRNA modification 99.0 9.2E-11 3.1E-15 99.8 3.5 62 22-100 2-64 (172)
73 3sop_A Neuronal-specific septi 99.0 1.6E-10 5.6E-15 106.1 5.3 67 25-102 3-74 (270)
74 2iw3_A Elongation factor 3A; a 99.0 3.7E-11 1.3E-15 127.2 1.0 155 15-206 452-630 (986)
75 2qtf_A Protein HFLX, GTP-bindi 99.0 5.5E-11 1.9E-15 113.8 1.5 64 21-101 175-239 (364)
76 4gp7_A Metallophosphoesterase; 98.9 1.1E-10 3.9E-15 99.6 1.0 29 17-45 2-30 (171)
77 1xzp_A Probable tRNA modificat 98.9 1.3E-10 4.5E-15 115.1 0.4 92 21-129 240-334 (482)
78 3lxw_A GTPase IMAP family memb 98.9 2.7E-10 9.2E-15 103.1 2.0 63 22-101 19-83 (247)
79 3lxx_A GTPase IMAP family memb 98.9 6E-10 2.1E-14 99.9 3.4 63 24-103 29-93 (239)
80 3iby_A Ferrous iron transport 98.9 1.8E-10 6.1E-15 105.0 -0.9 60 26-102 3-62 (256)
81 1mky_A Probable GTP-binding pr 98.9 4.9E-10 1.7E-14 109.9 1.9 87 26-129 3-92 (439)
82 2pt7_A CAG-ALFA; ATPase, prote 98.9 8.6E-10 3E-14 104.2 3.6 46 16-72 163-208 (330)
83 1htw_A HI0065; nucleotide-bind 98.8 8.7E-10 3E-14 93.1 2.2 47 15-73 24-70 (158)
84 1mky_A Probable GTP-binding pr 98.8 1.3E-09 4.3E-14 106.9 2.9 60 24-100 180-240 (439)
85 3i8s_A Ferrous iron transport 98.8 5.9E-10 2E-14 102.5 -0.2 61 25-102 4-64 (274)
86 1znw_A Guanylate kinase, GMP k 98.8 2.1E-10 7.2E-15 100.9 -3.2 30 19-48 15-44 (207)
87 2wji_A Ferrous iron transport 98.8 8.7E-09 3E-13 86.6 6.9 59 25-100 4-62 (165)
88 3ux8_A Excinuclease ABC, A sub 98.8 6.6E-10 2.3E-14 114.6 -0.7 73 123-205 552-634 (670)
89 3t5d_A Septin-7; GTP-binding p 98.8 4.1E-08 1.4E-12 89.9 11.3 64 25-101 9-78 (274)
90 3b9q_A Chloroplast SRP recepto 98.8 1.1E-08 3.6E-13 95.5 7.2 47 15-72 91-137 (302)
91 2og2_A Putative signal recogni 98.7 2E-08 6.8E-13 95.7 8.5 48 15-73 148-195 (359)
92 3b1v_A Ferrous iron uptake tra 98.7 1.2E-08 4E-13 93.8 6.0 59 25-101 4-62 (272)
93 4dhe_A Probable GTP-binding pr 98.7 1.6E-09 5.4E-14 95.4 -0.6 63 23-101 28-92 (223)
94 2hjg_A GTP-binding protein ENG 98.7 1.4E-09 4.8E-14 106.5 -1.1 88 25-129 4-93 (436)
95 1u8z_A RAS-related protein RAL 98.7 5.9E-08 2E-12 80.5 8.4 59 25-99 5-63 (168)
96 3gee_A MNME, tRNA modification 98.7 1.1E-09 3.9E-14 108.2 -2.6 92 21-129 230-323 (476)
97 3oes_A GTPase rhebl1; small GT 98.7 3.7E-08 1.3E-12 85.4 7.1 77 8-100 7-84 (201)
98 2ehv_A Hypothetical protein PH 98.6 3E-08 1E-12 88.6 6.3 30 17-46 23-52 (251)
99 3t5g_A GTP-binding protein RHE 98.6 6.4E-08 2.2E-12 82.0 7.9 60 25-100 7-66 (181)
100 2bov_A RAla, RAS-related prote 98.6 8.2E-08 2.8E-12 83.0 8.7 60 24-99 14-73 (206)
101 1kao_A RAP2A; GTP-binding prot 98.6 2E-07 6.8E-12 77.2 10.7 58 25-98 4-61 (167)
102 2a9k_A RAS-related protein RAL 98.6 9.4E-08 3.2E-12 80.9 8.7 60 24-99 18-77 (187)
103 2wjg_A FEOB, ferrous iron tran 98.6 2.4E-08 8.3E-13 85.2 4.4 60 25-101 8-67 (188)
104 2dyk_A GTP-binding protein; GT 98.6 8.7E-09 3E-13 85.4 1.5 59 26-101 3-62 (161)
105 1puj_A YLQF, conserved hypothe 98.6 3.3E-08 1.1E-12 91.2 5.4 61 22-102 118-179 (282)
106 4dcu_A GTP-binding protein ENG 98.6 3.2E-09 1.1E-13 104.6 -1.5 87 25-128 24-112 (456)
107 3k53_A Ferrous iron transport 98.6 2.6E-08 8.8E-13 91.1 4.5 60 25-101 4-63 (271)
108 2eyu_A Twitching motility prot 98.6 5.4E-08 1.8E-12 88.8 6.6 42 21-73 22-64 (261)
109 3a1s_A Iron(II) transport prot 98.6 2.8E-08 9.5E-13 90.5 4.6 60 25-101 6-65 (258)
110 2xtp_A GTPase IMAP family memb 98.6 2.6E-08 8.8E-13 90.3 4.2 63 23-102 21-85 (260)
111 2qm8_A GTPase/ATPase; G protei 98.6 2.4E-08 8E-13 94.5 3.6 45 15-70 46-90 (337)
112 2e87_A Hypothetical protein PH 98.6 2.6E-08 9E-13 94.9 3.9 63 22-101 165-227 (357)
113 4a74_A DNA repair and recombin 98.6 5.8E-08 2E-12 85.7 5.6 29 19-47 20-48 (231)
114 3geh_A MNME, tRNA modification 98.5 2.1E-09 7.3E-14 105.9 -4.6 64 20-100 220-284 (462)
115 1ye8_A Protein THEP1, hypothet 98.5 7.6E-08 2.6E-12 82.7 5.6 24 25-48 1-24 (178)
116 1oix_A RAS-related protein RAB 98.5 9.3E-08 3.2E-12 82.4 6.1 61 25-100 30-90 (191)
117 3ec1_A YQEH GTPase; atnos1, at 98.5 6.4E-09 2.2E-13 99.7 -1.6 72 23-114 161-238 (369)
118 2f9l_A RAB11B, member RAS onco 98.5 8.6E-08 2.9E-12 83.0 5.6 60 25-99 6-65 (199)
119 2hjg_A GTP-binding protein ENG 98.5 2.3E-08 7.8E-13 97.9 1.9 87 25-128 176-267 (436)
120 1z6g_A Guanylate kinase; struc 98.5 3.2E-08 1.1E-12 87.7 2.6 34 14-47 13-46 (218)
121 2qnr_A Septin-2, protein NEDD5 98.5 1.3E-07 4.4E-12 88.0 6.5 66 25-101 19-89 (301)
122 3pqc_A Probable GTP-binding pr 98.5 8.4E-09 2.9E-13 88.3 -1.6 59 23-101 22-81 (195)
123 2atv_A RERG, RAS-like estrogen 98.5 3.1E-07 1E-11 79.1 8.2 62 23-100 27-88 (196)
124 3jvv_A Twitching mobility prot 98.5 1E-07 3.6E-12 90.7 4.9 28 20-47 119-146 (356)
125 2vf7_A UVRA2, excinuclease ABC 98.4 1.4E-08 4.8E-13 106.4 -1.6 73 123-205 739-821 (842)
126 3ihw_A Centg3; RAS, centaurin, 98.4 3.2E-07 1.1E-11 78.5 7.3 58 24-98 20-77 (184)
127 2i3b_A HCR-ntpase, human cance 98.4 2.3E-08 8E-13 86.8 -0.1 36 24-72 1-36 (189)
128 1pui_A ENGB, probable GTP-bind 98.4 1.1E-07 3.8E-12 82.7 4.2 62 19-100 21-84 (210)
129 4aby_A DNA repair protein RECN 98.4 2.5E-07 8.7E-12 89.4 7.1 33 15-48 52-84 (415)
130 3lnc_A Guanylate kinase, GMP k 98.4 6.5E-08 2.2E-12 86.1 2.5 55 12-66 15-71 (231)
131 4dcu_A GTP-binding protein ENG 98.4 6E-08 2.1E-12 95.4 2.3 89 23-128 194-287 (456)
132 1zp6_A Hypothetical protein AT 98.4 2.2E-07 7.6E-12 79.7 5.4 41 20-73 5-45 (191)
133 3thx_A DNA mismatch repair pro 98.4 8.6E-07 2.9E-11 94.0 10.9 142 15-202 653-804 (934)
134 1tf7_A KAIC; homohexamer, hexa 98.4 3.3E-07 1.1E-11 91.7 7.2 49 13-72 27-78 (525)
135 3euj_A Chromosome partition pr 98.4 6.1E-08 2.1E-12 95.6 1.7 49 14-74 20-68 (483)
136 2y8e_A RAB-protein 6, GH09086P 98.4 1.2E-07 4.2E-12 79.6 3.1 60 25-99 15-74 (179)
137 3tkl_A RAS-related protein RAB 98.4 1.1E-07 3.7E-12 81.5 2.7 61 24-99 16-76 (196)
138 3b85_A Phosphate starvation-in 98.4 1.6E-08 5.4E-13 89.2 -2.8 32 16-47 14-45 (208)
139 2a5j_A RAS-related protein RAB 98.4 8E-08 2.7E-12 82.5 1.6 65 20-99 17-81 (191)
140 2obl_A ESCN; ATPase, hydrolase 98.4 1.8E-07 6.3E-12 88.7 4.2 49 15-75 63-111 (347)
141 3def_A T7I23.11 protein; chlor 98.4 5.5E-07 1.9E-11 81.8 7.2 62 24-102 36-98 (262)
142 2gza_A Type IV secretion syste 98.4 1.6E-07 5.4E-12 89.7 3.6 46 15-71 166-211 (361)
143 3pih_A Uvrabc system protein A 98.4 9.8E-08 3.3E-12 100.8 2.1 74 123-206 814-897 (916)
144 1g16_A RAS-related protein SEC 98.4 7.6E-08 2.6E-12 80.2 1.0 60 25-99 4-63 (170)
145 1t9h_A YLOQ, probable GTPase E 98.3 6.7E-08 2.3E-12 90.1 0.6 66 19-100 168-236 (307)
146 2lkc_A Translation initiation 98.3 7.7E-07 2.6E-11 74.8 7.2 62 22-100 6-67 (178)
147 1ek0_A Protein (GTP-binding pr 98.3 1.6E-07 5.6E-12 78.0 2.9 60 25-99 4-63 (170)
148 1u0l_A Probable GTPase ENGC; p 98.3 1.3E-07 4.6E-12 87.9 2.6 44 19-73 164-210 (301)
149 2qag_B Septin-6, protein NEDD5 98.3 2.5E-07 8.4E-12 89.8 4.4 35 14-48 30-66 (427)
150 3h2y_A GTPase family protein; 98.3 1.9E-07 6.5E-12 89.4 3.6 60 23-102 159-225 (368)
151 2qag_C Septin-7; cell cycle, c 98.3 1.1E-06 3.7E-11 85.4 8.8 24 26-49 33-56 (418)
152 1jwy_B Dynamin A GTPase domain 98.3 1.7E-07 5.8E-12 87.1 2.8 25 25-49 25-49 (315)
153 3cph_A RAS-related protein SEC 98.3 1.6E-07 5.5E-12 81.6 2.2 64 21-99 17-80 (213)
154 3qq5_A Small GTP-binding prote 98.3 4.3E-08 1.5E-12 95.4 -1.7 88 25-128 35-123 (423)
155 1z2a_A RAS-related protein RAB 98.3 1.8E-07 6.1E-12 77.8 2.2 60 25-99 6-65 (168)
156 4dsu_A GTPase KRAS, isoform 2B 98.3 2.7E-07 9.3E-12 78.3 3.3 59 25-99 5-63 (189)
157 1lvg_A Guanylate kinase, GMP k 98.3 2.1E-07 7.2E-12 81.0 2.4 44 22-65 2-47 (198)
158 1f5n_A Interferon-induced guan 98.3 9.7E-07 3.3E-11 89.1 7.5 67 24-101 38-104 (592)
159 3thx_B DNA mismatch repair pro 98.3 3.4E-06 1.2E-10 89.3 11.7 34 14-47 663-696 (918)
160 2qu8_A Putative nucleolar GTP- 98.3 5.2E-07 1.8E-11 79.8 4.6 60 24-100 29-88 (228)
161 2dpy_A FLII, flagellum-specifi 98.3 3.3E-07 1.1E-11 89.6 3.6 46 15-72 149-194 (438)
162 1s96_A Guanylate kinase, GMP k 98.3 2.5E-07 8.7E-12 82.1 2.5 29 20-48 12-40 (219)
163 2yhs_A FTSY, cell division pro 98.3 2.5E-07 8.6E-12 91.2 2.7 48 14-72 283-330 (503)
164 2v9p_A Replication protein E1; 98.3 2.4E-07 8.3E-12 86.2 2.4 33 15-47 117-149 (305)
165 2il1_A RAB12; G-protein, GDP, 98.3 2.6E-07 8.9E-12 79.4 2.2 60 24-98 26-85 (192)
166 3tw8_B RAS-related protein RAB 98.3 9.2E-07 3.2E-11 74.3 5.6 61 24-99 9-69 (181)
167 3clv_A RAB5 protein, putative; 98.2 3.5E-07 1.2E-11 78.3 2.9 28 23-50 6-33 (208)
168 2fn4_A P23, RAS-related protei 98.2 4.4E-07 1.5E-11 76.3 3.3 59 25-99 10-68 (181)
169 2efe_B Small GTP-binding prote 98.2 4.3E-07 1.5E-11 76.6 3.2 60 25-99 13-72 (181)
170 3tr0_A Guanylate kinase, GMP k 98.2 4.8E-07 1.6E-11 78.4 3.5 29 20-48 3-31 (205)
171 1x3s_A RAS-related protein RAB 98.2 3.6E-07 1.2E-11 78.0 2.5 61 24-99 15-75 (195)
172 3a00_A Guanylate kinase, GMP k 98.2 2.5E-07 8.4E-12 79.6 1.5 43 24-66 1-45 (186)
173 1h65_A Chloroplast outer envel 98.2 1.7E-06 5.7E-11 78.9 7.1 61 24-101 39-100 (270)
174 1svi_A GTP-binding protein YSX 98.2 7.4E-08 2.5E-12 82.6 -1.9 59 23-101 22-82 (195)
175 3r7w_A Gtpase1, GTP-binding pr 98.2 1.2E-06 4E-11 81.6 6.1 61 23-99 2-63 (307)
176 1z0f_A RAB14, member RAS oncog 98.2 5.3E-07 1.8E-11 75.7 3.3 59 24-98 15-74 (179)
177 2jeo_A Uridine-cytidine kinase 98.2 5.4E-07 1.8E-11 81.0 3.3 37 11-47 12-48 (245)
178 2ygr_A Uvrabc system protein A 98.2 4.7E-07 1.6E-11 95.8 3.3 31 15-45 659-689 (993)
179 2r6f_A Excinuclease ABC subuni 98.2 3.6E-07 1.2E-11 96.4 2.4 31 15-45 641-671 (972)
180 2oil_A CATX-8, RAS-related pro 98.2 4.1E-07 1.4E-11 77.9 2.3 28 22-49 23-50 (193)
181 3c8u_A Fructokinase; YP_612366 98.2 4.1E-07 1.4E-11 79.7 2.2 41 21-72 19-62 (208)
182 2gf9_A RAS-related protein RAB 98.2 3.2E-07 1.1E-11 78.4 1.4 61 24-99 22-82 (189)
183 1z0j_A RAB-22, RAS-related pro 98.2 4.4E-07 1.5E-11 75.5 2.1 25 24-48 6-30 (170)
184 3q85_A GTP-binding protein REM 98.2 1.5E-06 5E-11 72.4 5.2 61 25-100 3-63 (169)
185 2p5s_A RAS and EF-hand domain 98.2 6.4E-07 2.2E-11 77.3 3.1 61 23-98 27-87 (199)
186 3cnl_A YLQF, putative uncharac 98.2 1.8E-06 6.1E-11 78.7 6.0 58 25-102 100-158 (262)
187 1r2q_A RAS-related protein RAB 98.2 6.8E-07 2.3E-11 74.2 2.9 24 25-48 7-30 (170)
188 1pzn_A RAD51, DNA repair and r 98.2 6.7E-06 2.3E-10 78.0 10.1 46 18-72 125-175 (349)
189 1rj9_A FTSY, signal recognitio 98.2 5.8E-07 2E-11 83.7 2.6 40 23-73 101-140 (304)
190 2hxs_A RAB-26, RAS-related pro 98.2 2.2E-07 7.4E-12 78.2 -0.4 62 24-99 6-67 (178)
191 3cbq_A GTP-binding protein REM 98.2 1.1E-06 3.7E-11 76.0 4.1 62 23-99 22-83 (195)
192 2h57_A ADP-ribosylation factor 98.2 4.5E-07 1.5E-11 77.6 1.5 60 22-99 19-78 (190)
193 1c1y_A RAS-related protein RAP 98.2 9.1E-07 3.1E-11 73.3 3.4 59 25-99 4-62 (167)
194 1kgd_A CASK, peripheral plasma 98.2 1.2E-06 3.9E-11 75.0 4.1 43 23-65 4-48 (180)
195 2ew1_A RAS-related protein RAB 98.1 2.2E-06 7.5E-11 74.5 5.6 62 22-98 24-85 (201)
196 1sq5_A Pantothenate kinase; P- 98.1 6.7E-07 2.3E-11 83.4 2.3 40 22-72 78-122 (308)
197 2oap_1 GSPE-2, type II secreti 98.1 8.6E-07 3E-11 88.3 3.2 45 16-71 252-296 (511)
198 2gco_A H9, RHO-related GTP-bin 98.1 4E-06 1.4E-10 72.4 7.1 82 2-99 2-84 (201)
199 2rcn_A Probable GTPase ENGC; Y 98.1 1.4E-06 4.6E-11 82.9 4.4 37 22-69 213-250 (358)
200 1z08_A RAS-related protein RAB 98.1 2.5E-06 8.6E-11 70.9 5.6 61 24-99 6-66 (170)
201 1wms_A RAB-9, RAB9, RAS-relate 98.1 2.5E-06 8.6E-11 71.5 5.4 59 25-98 8-66 (177)
202 2f7s_A C25KG, RAS-related prot 98.1 1.9E-07 6.5E-12 81.7 -1.7 37 12-48 13-49 (217)
203 2w0m_A SSO2452; RECA, SSPF, un 98.1 4.6E-06 1.6E-10 73.2 7.2 33 15-47 13-46 (235)
204 3kkq_A RAS-related protein M-R 98.1 1.3E-06 4.3E-11 74.0 3.3 60 24-99 18-77 (183)
205 2bme_A RAB4A, RAS-related prot 98.1 3.3E-06 1.1E-10 71.4 5.9 60 24-98 10-69 (186)
206 3t34_A Dynamin-related protein 98.1 8.2E-07 2.8E-11 84.5 2.3 24 26-49 36-59 (360)
207 2cxx_A Probable GTP-binding pr 98.1 3.6E-06 1.2E-10 71.4 6.1 54 26-100 3-56 (190)
208 2ce2_X GTPase HRAS; signaling 98.1 1.5E-06 5.3E-11 71.5 3.4 59 25-99 4-62 (166)
209 1ky3_A GTP-binding protein YPT 98.1 4.2E-06 1.4E-10 70.2 6.1 61 24-98 8-68 (182)
210 2fg5_A RAB-22B, RAS-related pr 98.1 1.2E-06 4.1E-11 75.1 2.7 26 23-48 22-47 (192)
211 1z06_A RAS-related protein RAB 98.1 4.5E-06 1.6E-10 71.1 6.3 60 24-98 20-79 (189)
212 3bc1_A RAS-related protein RAB 98.1 8E-07 2.8E-11 75.5 1.4 25 25-49 12-36 (195)
213 1vg8_A RAS-related protein RAB 98.1 4.1E-06 1.4E-10 72.2 6.0 62 24-100 8-69 (207)
214 2yv5_A YJEQ protein; hydrolase 98.1 1.4E-06 4.6E-11 81.1 3.0 42 19-72 160-204 (302)
215 2j69_A Bacterial dynamin-like 98.1 6.4E-07 2.2E-11 92.6 0.8 36 22-57 67-103 (695)
216 2bcg_Y Protein YP2, GTP-bindin 98.1 4.8E-06 1.6E-10 72.0 6.3 61 24-99 8-68 (206)
217 3szr_A Interferon-induced GTP- 98.1 2.4E-06 8.1E-11 87.0 4.9 36 26-72 47-83 (608)
218 3e70_C DPA, signal recognition 98.1 7.9E-07 2.7E-11 83.7 1.3 41 21-72 126-166 (328)
219 3ney_A 55 kDa erythrocyte memb 98.1 2.3E-06 7.8E-11 74.6 4.1 48 22-71 17-66 (197)
220 3ec2_A DNA replication protein 98.0 9.4E-07 3.2E-11 75.3 1.4 29 19-47 33-61 (180)
221 2iwr_A Centaurin gamma 1; ANK 98.0 1.4E-06 4.9E-11 73.3 2.4 59 24-99 7-65 (178)
222 2qpt_A EH domain-containing pr 98.0 1.6E-06 5.6E-11 87.1 3.2 38 22-59 63-103 (550)
223 2aka_B Dynamin-1; fusion prote 98.0 1E-06 3.6E-11 80.9 1.5 26 24-49 26-51 (299)
224 3aez_A Pantothenate kinase; tr 98.0 1.3E-06 4.6E-11 81.5 2.2 27 21-47 87-113 (312)
225 2erx_A GTP-binding protein DI- 98.0 2.4E-06 8.3E-11 70.9 3.5 25 24-48 3-27 (172)
226 2h17_A ADP-ribosylation factor 98.0 8.3E-07 2.8E-11 75.3 0.6 59 22-100 19-77 (181)
227 3tau_A Guanylate kinase, GMP k 98.0 3.4E-06 1.2E-10 73.8 4.5 44 22-65 6-51 (208)
228 1fzq_A ADP-ribosylation factor 98.0 1.2E-06 3.9E-11 74.6 1.3 26 23-48 15-40 (181)
229 2o8b_B DNA mismatch repair pro 98.0 5.2E-06 1.8E-10 89.0 6.6 32 15-47 773-811 (1022)
230 2o52_A RAS-related protein RAB 98.0 4.8E-06 1.7E-10 71.9 5.1 63 22-99 23-85 (200)
231 2hup_A RAS-related protein RAB 98.0 1.4E-06 4.7E-11 75.6 1.5 60 24-98 29-88 (201)
232 2j41_A Guanylate kinase; GMP, 98.0 3.5E-06 1.2E-10 72.9 4.2 29 20-48 2-30 (207)
233 2kjq_A DNAA-related protein; s 98.0 2.9E-06 9.9E-11 70.5 3.4 25 23-47 35-59 (149)
234 1zj6_A ADP-ribosylation factor 98.0 1.7E-06 5.9E-11 73.7 2.1 59 22-100 14-72 (187)
235 1lw7_A Transcriptional regulat 98.0 9E-07 3.1E-11 84.4 0.3 32 16-47 160-193 (365)
236 2g6b_A RAS-related protein RAB 98.0 8.3E-06 2.9E-10 68.4 6.1 61 24-99 10-71 (180)
237 3q72_A GTP-binding protein RAD 98.0 6.2E-06 2.1E-10 68.3 5.1 58 25-100 3-61 (166)
238 2nzj_A GTP-binding protein REM 98.0 8.2E-06 2.8E-10 68.0 5.9 58 25-99 5-63 (175)
239 3th5_A RAS-related C3 botulinu 97.2 9.7E-07 3.3E-11 76.4 0.0 84 23-129 29-112 (204)
240 2cjw_A GTP-binding protein GEM 98.0 5.9E-06 2E-10 71.1 4.8 60 25-99 7-67 (192)
241 1wb9_A DNA mismatch repair pro 98.0 4.1E-06 1.4E-10 87.6 4.4 32 15-47 599-630 (800)
242 3lvq_E ARF-GAP with SH3 domain 98.0 1.9E-06 6.5E-11 85.4 1.7 57 23-99 321-377 (497)
243 3asz_A Uridine kinase; cytidin 97.9 3.5E-06 1.2E-10 73.4 3.2 27 21-47 3-29 (211)
244 1wb1_A Translation elongation 97.9 1.5E-06 5.1E-11 86.1 0.8 59 24-99 19-84 (482)
245 2q3h_A RAS homolog gene family 97.9 8.1E-06 2.8E-10 70.2 5.2 64 21-100 17-80 (201)
246 1m2o_B GTP-binding protein SAR 97.9 1.4E-05 4.8E-10 68.4 6.7 57 24-100 23-79 (190)
247 1zbd_A Rabphilin-3A; G protein 97.9 1.3E-05 4.5E-10 68.9 6.5 60 25-99 9-68 (203)
248 1p9r_A General secretion pathw 97.9 2.9E-06 9.9E-11 82.4 2.5 39 22-71 165-203 (418)
249 1f6b_A SAR1; gtpases, N-termin 97.9 1E-05 3.4E-10 69.9 5.6 57 24-100 25-81 (198)
250 3con_A GTPase NRAS; structural 97.9 1E-05 3.4E-10 68.8 5.5 59 25-99 22-80 (190)
251 3izq_1 HBS1P, elongation facto 97.9 2E-06 6.9E-11 87.5 1.2 30 22-51 165-194 (611)
252 1cr0_A DNA primase/helicase; R 97.9 2.4E-06 8E-11 78.8 1.5 34 14-47 25-58 (296)
253 2g3y_A GTP-binding protein GEM 97.9 1.3E-05 4.4E-10 70.4 6.2 59 25-98 38-97 (211)
254 3cpj_B GTP-binding protein YPT 97.9 1E-05 3.6E-10 71.0 5.6 60 25-99 14-73 (223)
255 2ged_A SR-beta, signal recogni 97.9 2.4E-06 8.2E-11 73.0 1.4 27 22-48 46-72 (193)
256 1ewq_A DNA mismatch repair pro 97.9 8.9E-06 3E-10 84.6 5.8 25 24-48 576-600 (765)
257 2gf0_A GTP-binding protein DI- 97.9 5.5E-06 1.9E-10 70.9 3.4 25 24-48 8-32 (199)
258 1mh1_A RAC1; GTP-binding, GTPa 97.9 1.6E-05 5.6E-10 66.9 6.2 60 25-100 6-65 (186)
259 1qhl_A Protein (cell division 97.9 3.8E-07 1.3E-11 81.4 -4.4 43 19-73 23-65 (227)
260 1ksh_A ARF-like protein 2; sma 97.9 2.1E-05 7.1E-10 66.6 6.6 58 22-99 16-73 (186)
261 1e69_A Chromosome segregation 97.9 0.00011 3.7E-09 68.6 12.1 31 16-47 17-47 (322)
262 2fu5_C RAS-related protein RAB 97.9 3E-06 1E-10 71.6 1.2 61 24-99 8-68 (183)
263 2ewv_A Twitching motility prot 97.9 4.3E-06 1.5E-10 80.0 2.3 39 21-70 133-172 (372)
264 2b6h_A ADP-ribosylation factor 97.9 2.6E-06 9E-11 73.2 0.7 27 22-48 27-53 (192)
265 3c5c_A RAS-like protein 12; GD 97.9 1.7E-05 5.7E-10 67.7 5.8 61 23-99 20-80 (187)
266 2fv8_A H6, RHO-related GTP-bin 97.9 1.4E-05 4.9E-10 69.2 5.4 60 24-99 25-84 (207)
267 1zd9_A ADP-ribosylation factor 97.8 1.9E-05 6.6E-10 67.2 6.1 28 22-49 20-47 (188)
268 3reg_A RHO-like small GTPase; 97.8 1.8E-05 6E-10 67.7 5.8 61 23-99 22-82 (194)
269 2zej_A Dardarin, leucine-rich 97.8 1.7E-05 5.7E-10 67.5 5.4 24 25-48 3-26 (184)
270 1tf7_A KAIC; homohexamer, hexa 97.8 1.6E-05 5.4E-10 79.4 5.8 31 17-47 274-304 (525)
271 2bbw_A Adenylate kinase 4, AK4 97.8 8.5E-06 2.9E-10 73.0 3.4 36 23-69 26-64 (246)
272 2f1r_A Molybdopterin-guanine d 97.8 3.5E-06 1.2E-10 71.7 0.7 37 25-72 3-42 (171)
273 2j0v_A RAC-like GTP-binding pr 97.8 2.6E-05 8.9E-10 67.6 6.3 61 24-100 9-69 (212)
274 2atx_A Small GTP binding prote 97.8 2.9E-05 1E-09 66.2 6.4 60 25-100 19-78 (194)
275 3dz8_A RAS-related protein RAB 97.8 1E-05 3.5E-10 69.0 3.4 28 21-48 20-47 (191)
276 2x2e_A Dynamin-1; nitration, h 97.8 1.4E-05 4.7E-10 75.8 4.6 25 25-49 32-56 (353)
277 4e22_A Cytidylate kinase; P-lo 97.8 4.4E-06 1.5E-10 75.5 1.0 35 22-67 25-62 (252)
278 2bdt_A BH3686; alpha-beta prot 97.8 8.6E-06 2.9E-10 69.7 2.8 23 24-46 2-24 (189)
279 1r8s_A ADP-ribosylation factor 97.8 3.1E-05 1E-09 63.9 6.1 54 26-99 2-55 (164)
280 2j1l_A RHO-related GTP-binding 97.8 2.2E-05 7.4E-10 68.5 5.3 60 24-99 34-93 (214)
281 4gzl_A RAS-related C3 botulinu 97.8 2.5E-05 8.7E-10 67.6 5.6 62 22-99 28-89 (204)
282 1upt_A ARL1, ADP-ribosylation 97.8 4.1E-05 1.4E-09 63.5 6.7 59 22-100 5-63 (171)
283 4eun_A Thermoresistant glucoki 97.8 1.2E-05 4E-10 69.8 3.4 26 22-47 27-52 (200)
284 2www_A Methylmalonic aciduria 97.8 6.9E-06 2.3E-10 77.9 2.1 26 22-47 72-97 (349)
285 1m7b_A RND3/RHOE small GTP-bin 97.8 2.9E-05 9.9E-10 65.8 5.8 24 25-48 8-31 (184)
286 1n0w_A DNA repair protein RAD5 97.8 1.9E-05 6.5E-10 69.9 4.8 46 18-72 18-68 (243)
287 3dpu_A RAB family protein; roc 97.8 3E-06 1E-10 84.9 -0.6 27 22-48 39-65 (535)
288 3kta_A Chromosome segregation 97.8 1.3E-05 4.5E-10 68.0 3.5 32 15-47 18-49 (182)
289 3bwd_D RAC-like GTP-binding pr 97.8 1.6E-05 5.4E-10 66.8 3.9 25 24-48 8-32 (182)
290 3j2k_7 ERF3, eukaryotic polype 97.7 9.5E-06 3.2E-10 79.3 2.7 27 22-48 15-41 (439)
291 1moz_A ARL1, ADP-ribosylation 97.7 1.6E-05 5.3E-10 67.0 3.7 59 22-100 16-74 (183)
292 3l0i_B RAS-related protein RAB 97.7 1.9E-06 6.5E-11 74.3 -2.2 61 24-99 33-93 (199)
293 1gwn_A RHO-related GTP-binding 97.7 4E-05 1.4E-09 66.6 5.7 26 24-49 28-53 (205)
294 3llu_A RAS-related GTP-binding 97.7 1.4E-05 4.8E-10 68.6 2.6 26 23-48 19-44 (196)
295 4djt_A GTP-binding nuclear pro 97.7 3.8E-06 1.3E-10 73.3 -1.0 25 24-48 11-35 (218)
296 2fh5_B SR-beta, signal recogni 97.7 6.5E-05 2.2E-09 65.1 6.8 59 24-99 7-65 (214)
297 3o47_A ADP-ribosylation factor 97.7 5E-06 1.7E-10 78.1 -0.5 56 23-98 164-219 (329)
298 3p26_A Elongation factor 1 alp 97.7 7.5E-06 2.6E-10 81.0 0.7 25 23-47 32-56 (483)
299 3q5d_A Atlastin-1; G protein, 97.7 5.3E-05 1.8E-09 73.9 6.6 71 25-101 68-153 (447)
300 3vaa_A Shikimate kinase, SK; s 97.7 2.1E-05 7.2E-10 68.0 3.4 38 10-47 11-48 (199)
301 3hvz_A Uncharacterized protein 97.7 2.1E-05 7.2E-10 57.8 2.8 40 305-347 8-47 (78)
302 4bas_A ADP-ribosylation factor 97.7 5.6E-05 1.9E-09 64.4 5.9 29 22-50 15-43 (199)
303 3mca_A HBS1, elongation factor 97.6 3.9E-06 1.3E-10 85.1 -1.7 24 24-47 177-200 (592)
304 3gj0_A GTP-binding nuclear pro 97.6 2.8E-06 9.4E-11 74.5 -2.5 60 23-99 14-75 (221)
305 2yc2_C IFT27, small RAB-relate 97.6 1.6E-05 5.5E-10 68.3 2.3 65 22-99 18-84 (208)
306 2xex_A Elongation factor G; GT 97.6 1.1E-05 3.8E-10 83.3 1.4 81 25-129 11-109 (693)
307 3q3j_B RHO-related GTP-binding 97.6 5.4E-05 1.8E-09 66.1 5.6 62 22-99 25-86 (214)
308 1rz3_A Hypothetical protein rb 97.6 1.6E-05 5.4E-10 69.1 2.1 27 21-47 19-45 (201)
309 2vp4_A Deoxynucleoside kinase; 97.6 1.8E-05 6.2E-10 70.2 2.5 29 19-47 15-43 (230)
310 2x8a_A Nuclear valosin-contain 97.6 2.8E-05 9.5E-10 71.1 3.7 28 18-47 40-67 (274)
311 1kag_A SKI, shikimate kinase I 97.6 2.4E-05 8.3E-10 65.6 3.0 25 23-47 3-27 (173)
312 3uie_A Adenylyl-sulfate kinase 97.6 3E-05 1E-09 67.1 3.3 28 20-47 21-48 (200)
313 2qag_A Septin-2, protein NEDD5 97.6 2.2E-05 7.4E-10 74.8 2.4 25 25-49 38-62 (361)
314 1nrj_B SR-beta, signal recogni 97.6 2.4E-05 8.3E-10 68.1 2.6 25 24-48 12-36 (218)
315 1knq_A Gluconate kinase; ALFA/ 97.6 3.3E-05 1.1E-09 65.0 3.3 26 22-47 6-31 (175)
316 1nij_A Hypothetical protein YJ 97.6 1.5E-05 5.1E-10 74.5 1.0 44 25-71 5-48 (318)
317 3zvr_A Dynamin-1; hydrolase, D 97.5 2.4E-05 8.3E-10 81.0 2.3 37 25-61 52-88 (772)
318 1nlf_A Regulatory protein REPA 97.5 4.5E-05 1.5E-09 69.6 3.4 35 13-47 19-53 (279)
319 2qt1_A Nicotinamide riboside k 97.5 5.9E-05 2E-09 65.4 3.9 33 15-47 12-44 (207)
320 2dy1_A Elongation factor G; tr 97.5 5.4E-05 1.9E-09 77.8 4.0 28 20-47 5-32 (665)
321 2x77_A ADP-ribosylation factor 97.5 8.2E-05 2.8E-09 63.1 4.5 58 23-100 21-78 (189)
322 3tr5_A RF-3, peptide chain rel 97.5 6.8E-06 2.3E-10 82.2 -2.9 25 22-46 11-35 (528)
323 2wkq_A NPH1-1, RAS-related C3 97.5 0.00013 4.5E-09 67.5 6.0 64 21-100 152-215 (332)
324 3izy_P Translation initiation 97.5 2.8E-05 9.4E-10 77.8 1.3 61 23-99 3-63 (537)
325 2cvh_A DNA repair and recombin 97.4 7.2E-05 2.5E-09 65.0 3.6 28 19-46 15-42 (220)
326 2p67_A LAO/AO transport system 97.4 4.7E-05 1.6E-09 71.8 2.3 31 17-47 49-79 (341)
327 2qor_A Guanylate kinase; phosp 97.4 5.7E-05 2E-09 65.5 2.5 45 21-65 9-55 (204)
328 3cr8_A Sulfate adenylyltranfer 97.4 5.3E-05 1.8E-09 76.0 2.5 41 20-71 365-407 (552)
329 1svm_A Large T antigen; AAA+ f 97.4 6.3E-05 2.2E-09 72.0 2.7 32 16-47 161-192 (377)
330 3sjy_A Translation initiation 97.4 6E-05 2.1E-09 72.7 2.5 26 23-48 7-32 (403)
331 2h5e_A Peptide chain release f 97.4 3.9E-05 1.3E-09 76.7 1.2 27 21-47 10-36 (529)
332 1ex7_A Guanylate kinase; subst 97.3 8E-05 2.7E-09 64.2 2.4 40 27-66 4-45 (186)
333 3qf7_A RAD50; ABC-ATPase, ATPa 97.3 9.6E-05 3.3E-09 70.4 3.1 28 17-45 17-44 (365)
334 1cke_A CK, MSSA, protein (cyti 97.3 0.00012 4.2E-09 64.1 3.5 24 24-47 5-28 (227)
335 1vma_A Cell division protein F 97.3 8.1E-05 2.8E-09 69.2 2.3 45 16-71 96-140 (306)
336 1dar_A EF-G, elongation factor 97.3 9.8E-05 3.4E-09 76.2 3.1 23 24-46 12-34 (691)
337 3tqc_A Pantothenate kinase; bi 97.3 0.00012 4E-09 68.5 3.2 23 25-47 93-115 (321)
338 2elf_A Protein translation elo 97.3 3.8E-05 1.3E-09 73.3 -0.2 70 26-127 23-92 (370)
339 2o5v_A DNA replication and rep 97.2 0.00013 4.5E-09 69.3 3.4 32 15-47 18-49 (359)
340 3nwj_A ATSK2; P loop, shikimat 97.2 7.4E-05 2.5E-09 67.4 1.3 33 15-47 36-71 (250)
341 3t1o_A Gliding protein MGLA; G 97.2 0.00026 9E-09 59.9 4.7 25 24-48 14-38 (198)
342 2c78_A Elongation factor TU-A; 97.2 3.8E-05 1.3E-09 74.1 -0.7 25 23-47 10-34 (405)
343 1y63_A LMAJ004144AAA protein; 97.2 0.0002 6.8E-09 61.0 3.8 32 16-47 2-33 (184)
344 1zun_B Sulfate adenylate trans 97.2 8.1E-05 2.8E-09 72.5 1.4 25 24-48 24-48 (434)
345 1jjv_A Dephospho-COA kinase; P 97.2 0.00018 6E-09 62.3 3.3 23 25-47 3-25 (206)
346 1ixz_A ATP-dependent metallopr 97.2 0.00016 5.6E-09 64.7 3.0 28 18-47 45-72 (254)
347 3lda_A DNA repair protein RAD5 97.2 0.00026 8.9E-09 68.2 4.6 30 18-47 172-203 (400)
348 1zu4_A FTSY; GTPase, signal re 97.2 0.00015 5.1E-09 67.8 2.7 47 15-72 96-142 (320)
349 2if2_A Dephospho-COA kinase; a 97.1 0.00019 6.7E-09 61.8 3.2 23 25-47 2-24 (204)
350 2pez_A Bifunctional 3'-phospho 97.1 0.00021 7.1E-09 60.4 3.2 26 22-47 3-28 (179)
351 2px0_A Flagellar biosynthesis 97.1 0.00014 4.9E-09 67.2 2.2 26 22-47 103-128 (296)
352 1m7g_A Adenylylsulfate kinase; 97.1 0.00013 4.6E-09 63.5 1.7 40 20-70 21-62 (211)
353 1f60_A Elongation factor EEF1A 97.1 5.2E-05 1.8E-09 74.4 -1.3 23 25-47 8-30 (458)
354 1iy2_A ATP-dependent metallopr 97.1 0.00022 7.7E-09 64.8 3.0 28 18-47 69-96 (278)
355 1w1w_A Structural maintenance 97.1 0.00025 8.7E-09 68.8 3.5 29 20-48 22-50 (430)
356 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.00034 1.2E-08 57.8 3.3 25 20-45 20-44 (149)
357 1kk1_A EIF2gamma; initiation o 97.0 0.0001 3.4E-09 71.3 -0.0 25 25-49 11-35 (410)
358 3cm0_A Adenylate kinase; ATP-b 97.0 0.00033 1.1E-08 59.2 3.1 25 22-46 2-26 (186)
359 2dhr_A FTSH; AAA+ protein, hex 97.0 0.0034 1.2E-07 62.1 10.7 67 17-98 59-134 (499)
360 1zo1_I IF2, translation initia 96.9 0.00022 7.6E-09 70.6 1.8 60 24-100 4-63 (501)
361 3t61_A Gluconokinase; PSI-biol 96.9 0.0004 1.4E-08 59.8 3.1 24 24-47 18-41 (202)
362 4dkx_A RAS-related protein RAB 96.9 0.00091 3.1E-08 58.7 5.4 23 25-47 14-36 (216)
363 1ls1_A Signal recognition part 96.9 0.00024 8.1E-09 65.6 1.7 45 15-72 91-135 (295)
364 1jny_A EF-1-alpha, elongation 96.9 6E-05 2E-09 73.5 -2.8 24 24-47 6-29 (435)
365 2ywe_A GTP-binding protein LEP 96.9 0.00024 8.2E-09 71.9 1.6 23 25-47 7-29 (600)
366 2yvu_A Probable adenylyl-sulfa 96.9 0.00052 1.8E-08 58.3 3.4 27 21-47 10-36 (186)
367 1in4_A RUVB, holliday junction 96.9 0.00022 7.5E-09 66.9 1.0 23 25-47 52-74 (334)
368 2dr3_A UPF0273 protein PH0284; 96.8 0.00061 2.1E-08 60.1 3.6 28 18-45 17-44 (247)
369 2rdo_7 EF-G, elongation factor 96.8 0.00056 1.9E-08 70.6 3.6 24 23-46 9-32 (704)
370 1n0u_A EF-2, elongation factor 96.8 0.00021 7.3E-09 75.2 0.4 23 25-47 20-42 (842)
371 1odf_A YGR205W, hypothetical 3 96.8 0.0006 2.1E-08 62.8 3.4 27 21-47 28-54 (290)
372 1r5b_A Eukaryotic peptide chai 96.8 0.00011 3.9E-09 72.2 -2.0 23 24-46 43-65 (467)
373 4eaq_A DTMP kinase, thymidylat 96.7 0.00075 2.6E-08 59.8 3.4 27 21-47 23-49 (229)
374 3lw7_A Adenylate kinase relate 96.7 0.00081 2.8E-08 55.7 3.3 20 25-44 2-21 (179)
375 3cb4_D GTP-binding protein LEP 96.7 0.00035 1.2E-08 70.8 1.1 85 26-129 6-105 (599)
376 3kb2_A SPBC2 prophage-derived 96.7 0.00088 3E-08 55.6 3.3 23 25-47 2-24 (173)
377 3m6a_A ATP-dependent protease 96.7 0.00078 2.7E-08 67.5 3.5 37 23-70 107-143 (543)
378 2rhm_A Putative kinase; P-loop 96.7 0.00097 3.3E-08 56.5 3.6 26 22-47 3-28 (193)
379 1q3t_A Cytidylate kinase; nucl 96.7 0.0009 3.1E-08 59.2 3.5 27 21-47 13-39 (236)
380 1kht_A Adenylate kinase; phosp 96.7 0.001 3.5E-08 56.2 3.5 24 24-47 3-26 (192)
381 2v54_A DTMP kinase, thymidylat 96.7 0.0011 3.8E-08 56.7 3.8 25 23-47 3-27 (204)
382 2bwj_A Adenylate kinase 5; pho 96.6 0.0007 2.4E-08 57.7 2.4 29 19-47 7-35 (199)
383 1qhx_A CPT, protein (chloramph 96.6 0.0012 4.3E-08 55.2 3.6 24 24-47 3-26 (178)
384 3qks_A DNA double-strand break 96.6 0.0011 3.9E-08 57.5 3.3 25 20-45 20-44 (203)
385 2jaq_A Deoxyguanosine kinase; 96.6 0.0012 4.2E-08 56.3 3.4 23 25-47 1-23 (205)
386 1ukz_A Uridylate kinase; trans 96.6 0.0014 4.7E-08 56.3 3.7 27 21-47 12-38 (203)
387 3qkt_A DNA double-strand break 96.6 0.0012 4E-08 62.0 3.5 25 20-45 20-44 (339)
388 1sxj_E Activator 1 40 kDa subu 96.5 0.00072 2.5E-08 63.3 1.8 36 27-72 39-74 (354)
389 1vht_A Dephospho-COA kinase; s 96.5 0.0013 4.5E-08 57.2 3.3 25 23-47 3-27 (218)
390 1ly1_A Polynucleotide kinase; 96.5 0.0015 5E-08 54.7 3.5 22 25-46 3-24 (181)
391 1np6_A Molybdopterin-guanine d 96.5 0.0013 4.5E-08 55.8 3.1 24 24-47 6-29 (174)
392 2c95_A Adenylate kinase 1; tra 96.5 0.0016 5.3E-08 55.4 3.6 27 21-47 6-32 (196)
393 2wwf_A Thymidilate kinase, put 96.5 0.0016 5.4E-08 56.1 3.7 26 22-47 8-33 (212)
394 2plr_A DTMP kinase, probable t 96.5 0.0015 5.1E-08 56.1 3.5 25 23-47 3-27 (213)
395 3k1j_A LON protease, ATP-depen 96.5 0.0014 4.7E-08 66.5 3.6 34 15-48 51-84 (604)
396 1aky_A Adenylate kinase; ATP:A 96.4 0.0017 5.9E-08 56.6 3.6 25 23-47 3-27 (220)
397 1nn5_A Similar to deoxythymidy 96.4 0.0018 6.1E-08 55.9 3.7 26 22-47 7-32 (215)
398 1tev_A UMP-CMP kinase; ploop, 96.4 0.0018 6.2E-08 54.7 3.4 24 24-47 3-26 (196)
399 2cdn_A Adenylate kinase; phosp 96.4 0.0021 7.3E-08 55.1 3.8 26 22-47 18-43 (201)
400 3fb4_A Adenylate kinase; psych 96.4 0.0018 6.2E-08 56.1 3.4 23 25-47 1-23 (216)
401 2p5t_B PEZT; postsegregational 96.3 0.0012 4E-08 59.3 2.0 28 20-47 28-55 (253)
402 3dl0_A Adenylate kinase; phosp 96.3 0.002 6.7E-08 56.0 3.4 23 25-47 1-23 (216)
403 2wsm_A Hydrogenase expression/ 96.3 0.0018 6.3E-08 56.1 3.1 24 24-47 30-53 (221)
404 3iij_A Coilin-interacting nucl 96.3 0.0021 7.3E-08 54.0 3.4 27 21-47 8-34 (180)
405 3hr8_A Protein RECA; alpha and 96.3 0.0011 3.9E-08 62.7 1.8 29 19-47 56-84 (356)
406 1zd8_A GTP:AMP phosphotransfer 96.3 0.0023 7.9E-08 56.1 3.5 26 22-47 5-30 (227)
407 3trf_A Shikimate kinase, SK; a 96.3 0.0024 8.3E-08 53.8 3.5 24 24-47 5-28 (185)
408 1uf9_A TT1252 protein; P-loop, 96.3 0.0024 8.2E-08 54.5 3.4 24 24-47 8-31 (203)
409 2iyv_A Shikimate kinase, SK; t 96.2 0.0021 7.4E-08 54.2 2.9 24 24-47 2-25 (184)
410 2z0h_A DTMP kinase, thymidylat 96.2 0.0026 8.7E-08 54.1 3.4 23 25-47 1-23 (197)
411 1via_A Shikimate kinase; struc 96.2 0.0022 7.5E-08 53.7 2.9 22 26-47 6-27 (175)
412 1nks_A Adenylate kinase; therm 96.2 0.0024 8.4E-08 53.8 3.2 23 25-47 2-24 (194)
413 1s0u_A EIF-2-gamma, translatio 96.2 0.0061 2.1E-07 58.6 6.3 26 24-49 8-33 (408)
414 2pt5_A Shikimate kinase, SK; a 96.2 0.0029 9.8E-08 52.4 3.4 23 25-47 1-23 (168)
415 1d2e_A Elongation factor TU (E 96.2 0.0027 9.1E-08 60.9 3.5 24 24-47 3-26 (397)
416 1j8m_F SRP54, signal recogniti 96.2 0.0013 4.4E-08 60.8 1.2 30 17-47 92-121 (297)
417 2pbr_A DTMP kinase, thymidylat 96.2 0.0028 9.7E-08 53.5 3.4 23 25-47 1-23 (195)
418 2vli_A Antibiotic resistance p 96.2 0.002 6.8E-08 54.1 2.3 25 23-47 4-28 (183)
419 1gtv_A TMK, thymidylate kinase 96.1 0.0014 4.8E-08 56.6 1.3 22 26-47 2-23 (214)
420 3be4_A Adenylate kinase; malar 96.1 0.003 1E-07 55.1 3.5 25 23-47 4-28 (217)
421 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0023 8E-08 60.4 2.9 30 18-47 16-47 (359)
422 1zak_A Adenylate kinase; ATP:A 96.1 0.0028 9.6E-08 55.3 3.3 25 23-47 4-28 (222)
423 1qf9_A UMP/CMP kinase, protein 96.1 0.0032 1.1E-07 53.0 3.5 25 23-47 5-29 (194)
424 3tlx_A Adenylate kinase 2; str 96.1 0.0032 1.1E-07 56.0 3.6 26 22-47 27-52 (243)
425 3r20_A Cytidylate kinase; stru 96.1 0.0033 1.1E-07 55.9 3.5 25 23-47 8-32 (233)
426 3a4m_A L-seryl-tRNA(SEC) kinas 96.0 0.0036 1.2E-07 56.3 3.5 25 23-47 3-27 (260)
427 1e4v_A Adenylate kinase; trans 96.0 0.0036 1.2E-07 54.3 3.3 23 25-47 1-23 (214)
428 1gvn_B Zeta; postsegregational 96.0 0.0032 1.1E-07 57.7 3.1 26 22-47 31-56 (287)
429 2ze6_A Isopentenyl transferase 96.0 0.0033 1.1E-07 56.5 3.1 22 26-47 3-24 (253)
430 3sr0_A Adenylate kinase; phosp 96.0 0.0039 1.3E-07 54.3 3.4 23 25-47 1-23 (206)
431 1e6c_A Shikimate kinase; phosp 96.0 0.0039 1.3E-07 51.8 3.2 23 25-47 3-25 (173)
432 1ak2_A Adenylate kinase isoenz 95.9 0.0046 1.6E-07 54.5 3.8 27 21-47 13-39 (233)
433 2xb4_A Adenylate kinase; ATP-b 95.9 0.0041 1.4E-07 54.5 3.4 23 25-47 1-23 (223)
434 2hf9_A Probable hydrogenase ni 95.9 0.0037 1.3E-07 54.3 3.0 24 24-47 38-61 (226)
435 2ffh_A Protein (FFH); SRP54, s 95.9 0.0033 1.1E-07 60.9 2.9 30 16-47 92-121 (425)
436 3ice_A Transcription terminati 95.9 0.004 1.4E-07 59.4 3.3 31 17-47 167-197 (422)
437 3p32_A Probable GTPase RV1496/ 95.9 0.004 1.4E-07 58.8 3.4 25 23-47 78-102 (355)
438 3c5h_A Glucocorticoid receptor 95.8 0.0073 2.5E-07 54.1 4.7 25 23-47 18-51 (255)
439 4ad8_A DNA repair protein RECN 95.8 0.002 6.9E-08 64.0 1.0 31 16-47 53-83 (517)
440 1sxj_C Activator 1 40 kDa subu 95.8 0.003 1E-07 59.0 2.1 31 17-47 37-69 (340)
441 1zuh_A Shikimate kinase; alpha 95.8 0.0054 1.9E-07 50.9 3.4 24 24-47 7-30 (168)
442 3ake_A Cytidylate kinase; CMP 95.8 0.0053 1.8E-07 52.5 3.4 22 26-47 4-25 (208)
443 1xjc_A MOBB protein homolog; s 95.7 0.0055 1.9E-07 51.7 3.1 23 25-47 5-27 (169)
444 1lv7_A FTSH; alpha/beta domain 95.7 0.0061 2.1E-07 54.3 3.5 22 26-47 47-68 (257)
445 2zr9_A Protein RECA, recombina 95.7 0.0058 2E-07 57.6 3.5 29 19-47 56-84 (349)
446 3umf_A Adenylate kinase; rossm 95.6 0.0071 2.4E-07 53.1 3.7 29 19-47 24-52 (217)
447 3cf0_A Transitional endoplasmi 95.6 0.006 2E-07 56.0 3.3 28 20-47 45-72 (301)
448 3vqt_A RF-3, peptide chain rel 95.6 0.0056 1.9E-07 61.3 3.0 83 23-129 30-134 (548)
449 1g7s_A Translation initiation 95.6 0.0054 1.9E-07 62.0 2.9 24 25-48 6-29 (594)
450 2r6a_A DNAB helicase, replicat 95.5 0.0057 2E-07 59.7 2.9 33 15-47 194-226 (454)
451 3kl4_A SRP54, signal recogniti 95.5 0.0039 1.3E-07 60.5 1.5 25 23-47 96-120 (433)
452 2grj_A Dephospho-COA kinase; T 95.4 0.008 2.8E-07 51.7 3.3 25 23-47 11-35 (192)
453 3r7w_B Gtpase2, GTP-binding pr 95.4 0.014 4.9E-07 54.4 5.1 22 26-47 1-22 (331)
454 1ypw_A Transitional endoplasmi 95.4 0.0068 2.3E-07 63.5 3.1 28 20-47 234-261 (806)
455 2f6r_A COA synthase, bifunctio 95.4 0.0089 3.1E-07 54.4 3.5 24 23-46 74-97 (281)
456 3v9p_A DTMP kinase, thymidylat 95.4 0.0071 2.4E-07 53.5 2.7 28 20-47 21-48 (227)
457 3auy_A DNA double-strand break 95.3 0.0091 3.1E-07 56.6 3.5 25 20-45 22-46 (371)
458 4ag6_A VIRB4 ATPase, type IV s 95.3 0.007 2.4E-07 57.7 2.6 25 23-47 34-58 (392)
459 3gmt_A Adenylate kinase; ssgci 95.3 0.01 3.5E-07 52.5 3.4 25 23-47 7-31 (230)
460 1uj2_A Uridine-cytidine kinase 95.2 0.01 3.6E-07 52.8 3.4 23 24-46 22-44 (252)
461 3bos_A Putative DNA replicatio 95.2 0.012 4E-07 51.2 3.5 25 23-47 51-75 (242)
462 1jbk_A CLPB protein; beta barr 95.1 0.015 5.1E-07 48.3 3.8 25 23-47 42-66 (195)
463 1v5w_A DMC1, meiotic recombina 95.1 0.013 4.5E-07 54.9 3.8 29 19-47 117-145 (343)
464 4edh_A DTMP kinase, thymidylat 95.1 0.013 4.3E-07 51.3 3.4 26 22-47 4-29 (213)
465 1ltq_A Polynucleotide kinase; 95.1 0.012 4.2E-07 53.6 3.5 22 25-46 3-24 (301)
466 4b4t_J 26S protease regulatory 95.0 0.019 6.6E-07 55.0 4.7 27 21-47 179-205 (405)
467 3b9p_A CG5977-PA, isoform A; A 95.0 0.013 4.5E-07 53.2 3.4 25 23-47 53-77 (297)
468 2qby_A CDC6 homolog 1, cell di 95.0 0.012 4E-07 55.0 3.1 26 22-47 43-68 (386)
469 2ce7_A Cell division protein F 94.9 0.012 4.2E-07 57.8 3.1 21 27-47 52-72 (476)
470 3llm_A ATP-dependent RNA helic 94.9 0.0074 2.5E-07 53.2 1.4 30 17-46 69-98 (235)
471 1fnn_A CDC6P, cell division co 94.9 0.015 5.1E-07 54.6 3.5 22 26-47 46-67 (389)
472 2h92_A Cytidylate kinase; ross 94.9 0.014 4.8E-07 50.5 3.1 24 24-47 3-26 (219)
473 2ocp_A DGK, deoxyguanosine kin 94.8 0.017 5.8E-07 51.0 3.4 24 24-47 2-25 (241)
474 4b4t_K 26S protease regulatory 94.8 0.018 6.1E-07 55.8 3.8 27 21-47 203-229 (428)
475 2z43_A DNA repair and recombin 94.8 0.017 5.7E-07 53.7 3.5 29 19-47 102-130 (324)
476 2ius_A DNA translocase FTSK; n 94.8 0.015 5E-07 57.6 3.2 34 13-46 156-189 (512)
477 3lv8_A DTMP kinase, thymidylat 94.7 0.018 6.3E-07 51.1 3.6 26 22-47 25-50 (236)
478 2w58_A DNAI, primosome compone 94.7 0.017 5.7E-07 49.3 3.2 23 25-47 55-77 (202)
479 3avx_A Elongation factor TS, e 94.7 0.028 9.7E-07 60.6 5.5 25 23-47 295-319 (1289)
480 4fcw_A Chaperone protein CLPB; 94.7 0.016 5.6E-07 52.8 3.3 24 24-47 47-70 (311)
481 4tmk_A Protein (thymidylate ki 94.7 0.02 6.8E-07 50.0 3.6 25 23-47 2-26 (213)
482 3zvl_A Bifunctional polynucleo 94.7 0.026 8.9E-07 54.4 4.8 26 22-47 256-281 (416)
483 3tmk_A Thymidylate kinase; pho 94.6 0.021 7.3E-07 50.0 3.7 26 22-47 3-28 (216)
484 3bh0_A DNAB-like replicative h 94.6 0.017 5.7E-07 53.5 3.1 32 15-46 59-90 (315)
485 4b4t_L 26S protease subunit RP 94.6 0.024 8.3E-07 54.9 4.4 27 21-47 212-238 (437)
486 3h4m_A Proteasome-activating n 94.6 0.02 6.7E-07 51.6 3.5 27 21-47 48-74 (285)
487 1p5z_B DCK, deoxycytidine kina 94.6 0.011 3.9E-07 52.9 1.8 27 21-47 21-47 (263)
488 1sky_E F1-ATPase, F1-ATP synth 94.6 0.018 6E-07 56.4 3.2 26 22-47 149-174 (473)
489 1yrb_A ATP(GTP)binding protein 94.5 0.022 7.6E-07 50.5 3.4 24 22-45 12-35 (262)
490 2j37_W Signal recognition part 94.4 0.021 7.1E-07 56.5 3.4 23 23-45 100-122 (504)
491 2p65_A Hypothetical protein PF 94.4 0.02 7E-07 47.4 2.9 24 24-47 43-66 (187)
492 1a7j_A Phosphoribulokinase; tr 94.4 0.012 4E-07 54.0 1.4 25 23-47 4-28 (290)
493 3ld9_A DTMP kinase, thymidylat 94.4 0.025 8.5E-07 49.8 3.5 26 22-47 19-44 (223)
494 4b4t_M 26S protease regulatory 94.3 0.023 8E-07 55.0 3.5 27 21-47 212-238 (434)
495 2zts_A Putative uncharacterize 94.3 0.027 9.3E-07 49.3 3.6 28 17-44 23-50 (251)
496 2v3c_C SRP54, signal recogniti 94.2 0.016 5.3E-07 56.3 2.0 24 24-47 99-122 (432)
497 1l8q_A Chromosomal replication 94.2 0.021 7.3E-07 52.6 2.8 24 24-47 37-60 (324)
498 3j25_A Tetracycline resistance 94.2 0.01 3.5E-07 60.5 0.7 20 26-45 4-23 (638)
499 1tue_A Replication protein E1; 94.1 0.024 8.2E-07 49.3 2.6 27 21-47 55-81 (212)
500 2qz4_A Paraplegin; AAA+, SPG7, 94.0 0.032 1.1E-06 49.3 3.6 26 22-47 37-62 (262)
No 1
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=3.2e-71 Score=535.69 Aligned_cols=345 Identities=51% Similarity=0.943 Sum_probs=308.5
Q ss_pred CCCccccCcCCCCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCcceEEEeCCcchhHHHhh
Q 018809 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQL 79 (350)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~-~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~ 79 (350)
|||+.. .+..+++.+++++|.++||+|+||||||||||+|+|... .+++|||||+.|+.|.+.++|.++..++.+
T Consensus 1 ~~~~~~----~~~~~~~lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~ 76 (392)
T 1ni3_A 1 MPPKKQ----QEVVKVQWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEA 76 (392)
T ss_dssp --------------CCCCSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHH
T ss_pred CCCCcc----CcchhhHhccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhh
Confidence 777632 244567899999999999999999999999999999887 679999999999999999999999999999
Q ss_pred ccCCCCCCcceeeeeecccccccccCccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHHH
Q 018809 80 FKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDI 159 (350)
Q Consensus 80 ~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~l 159 (350)
+.+.+.++..+.++|+||+..+.+.++++++.++..++.+|++++|+|++.+.++.++.+..||.++++++++++..+|+
T Consensus 77 ~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~ 156 (392)
T 1ni3_A 77 YKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDA 156 (392)
T ss_dssp HCCSEEECEEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccccCcceEEEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHH
Confidence 99998888889999999999988888889999999999999999999999988899998899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcc----cccHHHHHHHHHHHHHHhhcC-CccccCCCChhHHHHHHHhhhhhcCCcchhcccchh
Q 018809 160 EFMERRIEDVEKSMKRSN----DKQLKIEHELCQRVKAWLQDG-KDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEK 234 (350)
Q Consensus 160 ~~l~~~~~~~~~~~~~~~----~h~~~~~~~l~~~i~~~L~~g-~~~~~~~~t~~~~e~i~~~~~~~~kp~~~~~n~~~~ 234 (350)
..+++.++++.+....++ +|.+.++.++|+++..+|++| ++++.++|++++.+.++.+++++.||++|++|+.++
T Consensus 157 ~~~~k~~~~l~~~~~~~g~ti~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~~e~e~i~~~~~lt~kp~~y~~Nv~e~ 236 (392)
T 1ni3_A 157 EFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSER 236 (392)
T ss_dssp HHHHHHHHHHHHTTCCSSCSSSHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCCHHHHHHHHTTCCGGGSCEEEEEECCHH
T ss_pred HHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHhccCCceeecCCCCHHHHHHHHHHhhhccCceEEEEEecch
Confidence 999888887776512332 599999999999998799999 999889999999999998899999999999999997
Q ss_pred hhhhhcccChhHHHHHHHhhC-CCeEEEecHHHHHHhcCCChhHHHHHHHhcCCCCcHHHHHHHHHhhcCCceeeccCCC
Q 018809 235 DYQRKKNKFLPKIHAWVQEHG-GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPD 313 (350)
Q Consensus 235 ~~~~~~~~~~~~i~~~~~~~~-~~~~v~~sa~~e~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~l~li~~ft~~~~ 313 (350)
++..+.+++++++++++.+.+ +.+++++||+.|.+|++|+++++.+|++++|.++||++|++++|++||||+|||+||+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~~L~l~~~ft~g~~ 316 (392)
T 1ni3_A 237 DFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALNLINYFTCGED 316 (392)
T ss_dssp HHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEECCSS
T ss_pred hhcccchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHHHhCCEEEECCCCC
Confidence 664234788999999887643 3679999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeecCCCCChhhhhhccccccccCeeEEEEEee
Q 018809 314 EVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVVAC 349 (350)
Q Consensus 314 e~~a~~~~~gsta~~~A~~IHsd~~~~fi~A~v~~~ 349 (350)
|+|||||++||||+||||+|||||+|||||||||+|
T Consensus 317 e~rawti~~G~~a~~aag~IH~d~~~gfi~ae~~~~ 352 (392)
T 1ni3_A 317 EVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHY 352 (392)
T ss_dssp EEEEEEEETTCBHHHHHHHHCHHHHHTCSEEEEECH
T ss_pred cceeEEeCCCCcHHHHccccchhhhhccEEEEECCH
Confidence 999999999999999999999999999999999987
No 2
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.9e-70 Score=526.28 Aligned_cols=347 Identities=61% Similarity=1.014 Sum_probs=263.7
Q ss_pred CCCccccCcCCCCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhc
Q 018809 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLF 80 (350)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~ 80 (350)
|||+... +.+...++.+++..+.++||+|+||+|||||||+|+|....++++||||+.|+.|.+.++|.++.++++.+
T Consensus 1 ~~~~~~~--~~~~~~~l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~ 78 (396)
T 2ohf_A 1 MPPKKGG--DGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYH 78 (396)
T ss_dssp -----------------CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHH
T ss_pred CCCCccc--ccchhhHHHhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeecccc
Confidence 6776321 01344578889999999999999999999999999999887799999999999999999999888999989
Q ss_pred cCCCCCCcceeeeeecccccccccCccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHHHH
Q 018809 81 KPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIE 160 (350)
Q Consensus 81 ~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~ 160 (350)
.+.+.++.+++++|+||+..+.+.+.++++.++..++.+|++++|+|++.++++.++++..+|.++++.++.|+.+++++
T Consensus 79 ~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~d~~ 158 (396)
T 2ohf_A 79 KPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEE 158 (396)
T ss_dssp CCSEEECCEEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhhhHH
Confidence 88888888899999999998888888899999999999999999999999999999988899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcC-Cccc-cCCCChhHHHHHHHhhhhhcCCcchhcccchhhhhh
Q 018809 161 FMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG-KDVR-LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQR 238 (350)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g-~~~~-~~~~t~~~~e~i~~~~~~~~kp~~~~~n~~~~~~~~ 238 (350)
.++++++++.+....++.+....+..+++++..+|++| ++++ ..+|++++.+.++.++++++||++|++|+.++++..
T Consensus 159 ~~~k~~~~~~k~~~~~g~~~~~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~e~e~i~~~~llt~KPviy~~Nv~e~~~~~ 238 (396)
T 2ohf_A 159 MIGPIIDKLEKVAVRGGDKKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIR 238 (396)
T ss_dssp HHHHHHHTTCSCC--------CCHHHHHHHHHHHTTC--CCGGGCCCCCHHHHHHHHHHCCGGGSCEEEEEECCHHHHHH
T ss_pred HHHHhhhhhhhhhhcccchhhhhHHHHHHHHHHHHHhcCcchhhcccCCHHHHHHHHHHHHHhCCceEEEEEecHHHhcc
Confidence 99988876554322222233445678999999999999 6675 467999988888888999999999999999888765
Q ss_pred hcccChhHHHHHHHhh-CCCeEEEecHHHHHHhcCCChhHHHHHHHhcCCCCcHHHHHHHHHhhcCCceeeccCCCCeee
Q 018809 239 KKNKFLPKIHAWVQEH-GGEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPDEVKC 317 (350)
Q Consensus 239 ~~~~~~~~i~~~~~~~-~~~~~v~~sa~~e~~l~~l~~~~~~~~~~~~~~~~~l~~li~~~~~~l~li~~ft~~~~e~~a 317 (350)
+.+++++.+++++... .+.+++++||+.|++|++|+++++.+|++++|.++||++|++++|++||||+|||+||||+||
T Consensus 239 ~~n~~~~~v~~~~~~~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~~~l~~li~~~~~~L~li~~fT~g~~evra 318 (396)
T 2ohf_A 239 KKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYFFTAGPDEVRA 318 (396)
T ss_dssp TCCHHHHHHHHHHHHHSTTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEEESSSEEEE
T ss_pred cccHHHHHHHHHHHhhCCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCCchHHHHHHHHHHHhCCEEEECCCCCccee
Confidence 5577899999887653 257899999999999999999999999999997799999999999999999999999999999
Q ss_pred eecCCCCChhhhhhccccccccCeeEEEEEee
Q 018809 318 WQIRRQTKAPQAAGTIHTDFERGFICAEVVAC 349 (350)
Q Consensus 318 ~~~~~gsta~~~A~~IHsd~~~~fi~A~v~~~ 349 (350)
|||++||||+||||+|||||+|||||||||+|
T Consensus 319 wti~~g~ta~~aAg~IH~D~~~gFi~Aev~~~ 350 (396)
T 2ohf_A 319 WTIRKGTKAPQAAGKIHTDFEKGFIMAEVMKY 350 (396)
T ss_dssp EEEETTCBHHHHHHTTCTHHHHHEEEEEEECH
T ss_pred EEecCCCcHHHHHhhhHHHHHhcceEEEEccH
Confidence 99999999999999999999999999999987
No 3
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=1.3e-66 Score=498.05 Aligned_cols=323 Identities=40% Similarity=0.751 Sum_probs=281.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
++.+++|||.||+|||||||+|++....+++|||||+.|+.|.+.+++.++.++++.+.|.+..+..++++|+||+..++
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 36789999999999999999999988677999999999999999999998889999999988888889999999999887
Q ss_pred ccCccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHH
Q 018809 103 HEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLK 182 (350)
Q Consensus 103 ~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~ 182 (350)
+.+.+++++++..++.+|++++|+|++.++++.++++..||..+++.++.|+.++++..+++++.++.+.. +++.+...
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~-k~g~~~~~ 159 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRA-KGGDKEAK 159 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTCHHHH
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHh-hccchhHH
Confidence 77778899999999999999999999999999999888999999999999999999999999998877654 33224556
Q ss_pred HHHHHHHHHHHHhhcCCccccCCCChhHHHHHHHhhhhhcCCcchhcccchhhhhhhcccChhHHHHHHHhhCCCeEEEe
Q 018809 183 IEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPF 262 (350)
Q Consensus 183 ~~~~l~~~i~~~L~~g~~~~~~~~t~~~~e~i~~~~~~~~kp~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~ 262 (350)
...+++++++.+|++|++++..+|++++.+.++.+.+++.||++|++|+.++++ ..+.+++.+++++... +.+++++
T Consensus 160 ~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~--~~n~~~~~v~~~~~~~-~~~~i~~ 236 (363)
T 1jal_A 160 FELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF--ENNPYLDRVREIAAKE-GAVVVPV 236 (363)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS--SSCHHHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc--cccHHHHHHHHHHHHc-CCCEEEe
Confidence 778899999999999999887789999989999998999999999999998765 2356888999887664 6789999
Q ss_pred cHHHHHHhcCCChhHHHHHHHhcC-CCCcHHHHHHHHHhhcCCceeeccCCCCeeeeecCCCCChhhhhhccccccccCe
Q 018809 263 SCALERNLADMPPDEAAKYCEENK-VQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGF 341 (350)
Q Consensus 263 sa~~e~~l~~l~~~~~~~~~~~~~-~~~~l~~li~~~~~~l~li~~ft~~~~e~~a~~~~~gsta~~~A~~IHsd~~~~f 341 (350)
||+.|.+|.+|+++++.+|++++| .++||++|++++|++||||+|||+||+|+|||||++||||+||||+|||||+|||
T Consensus 237 sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~raw~i~~G~ta~~aAg~IH~D~~~gF 316 (363)
T 1jal_A 237 CAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGF 316 (363)
T ss_dssp CHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTTEEEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHHHHC
T ss_pred chHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhCCEEEECCCCCCcceeEecCCCcHHHHHHhhHHHHHhcc
Confidence 999999999999999999999999 6999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEee
Q 018809 342 ICAEVVAC 349 (350)
Q Consensus 342 i~A~v~~~ 349 (350)
||||||+|
T Consensus 317 i~Aev~~~ 324 (363)
T 1jal_A 317 IRAEVIAY 324 (363)
T ss_dssp CEEEEECH
T ss_pred EEEEEcCH
Confidence 99999997
No 4
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=100.00 E-value=2.1e-63 Score=478.38 Aligned_cols=322 Identities=45% Similarity=0.706 Sum_probs=280.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCC----CCCcceeeeeeccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS----AVPAFLEIHDIAGLVR 100 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~----~~~~~l~~~D~~g~~~ 100 (350)
..+||+|+||+|||||||+|++....+++|||||+.|+.|.+.+++.++..++..+.+.+ ..+..++++|+||+..
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 368999999999999999999987667999999999999999999998888888888776 4556799999999998
Q ss_pred ccccCccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 018809 101 GAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQ 180 (350)
Q Consensus 101 ~~~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~ 180 (350)
+++.+.+++++++..++.+|++++|+|++.++++.++++..||..+++.++.|+.+++++.++++++++.+.. .+ .+.
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~-~~-~~~ 159 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEA-RA-DRE 159 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-CGG
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhh-cc-chh
Confidence 8888888999999999999999999999998899999888999999999999999999999999998877653 22 356
Q ss_pred HHHHHHHHHHHHHHhhcCCccccCCCChhHHHHHHHhhhhhcCCcchhcccchhhhhhh-cccChhHHHHHHHhhCCCeE
Q 018809 181 LKIEHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRK-KNKFLPKIHAWVQEHGGEQI 259 (350)
Q Consensus 181 ~~~~~~l~~~i~~~L~~g~~~~~~~~t~~~~e~i~~~~~~~~kp~~~~~n~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~ 259 (350)
.....++++++..+|++|++++..+|++++.+.++.+.+++.||++|++|+.++++... .+.+++.+++++... +.++
T Consensus 160 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~-g~~v 238 (368)
T 2dby_A 160 RLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEE-GAEV 238 (368)
T ss_dssp GHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHH-TCEE
T ss_pred HHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHc-CCeE
Confidence 67778899999999999998877789888888999999999999999999998765331 256888898887765 5789
Q ss_pred EEecHHHHHHhcCCChhHHHHHHHhcC-CCCcHHHHHHHHHhhcCCceeeccCCCCeeeeecCCCCChhhhhhccccccc
Q 018809 260 IPFSCALERNLADMPPDEAAKYCEENK-VQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFE 338 (350)
Q Consensus 260 v~~sa~~e~~l~~l~~~~~~~~~~~~~-~~~~l~~li~~~~~~l~li~~ft~~~~e~~a~~~~~gsta~~~A~~IHsd~~ 338 (350)
+++||+.|.++.+|.++++.+|++++| .++||++|++++|++||||+|||+||+|+|||||++||||+||||+|||||+
T Consensus 239 v~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~~aw~i~~g~ta~~~a~~IH~d~~ 318 (368)
T 2dby_A 239 VVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDME 318 (368)
T ss_dssp EEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTEEEEEEESSSCEEEEEEETTCBHHHHHHHHCHHHH
T ss_pred EEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhCCEEEECCCCCCcceEEecCCCcHHHHHHhhHHHHH
Confidence 999999999999999999999999999 5999999999999999999999999999999999999999999999999999
Q ss_pred cCeeEEEEEee
Q 018809 339 RGFICAEVVAC 349 (350)
Q Consensus 339 ~~fi~A~v~~~ 349 (350)
|||||||||+|
T Consensus 319 ~~fi~A~v~~~ 329 (368)
T 2dby_A 319 RGFIRAEVIPW 329 (368)
T ss_dssp HSCCEEEEEEH
T ss_pred hhCeEEEEccH
Confidence 99999999997
No 5
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=8.1e-45 Score=353.13 Aligned_cols=308 Identities=26% Similarity=0.376 Sum_probs=205.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEE----eCCcchhHHHh-----hccCCCCCCcceeeeeec
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN----IPDERFEWLCQ-----LFKPKSAVPAFLEIHDIA 96 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~----~~~~~l~~l~~-----~~~~~~~~~~~l~~~D~~ 96 (350)
+++|+|.||+|||||||+|+|....++++||||+.|+.|.+. +++.++..++. .+.+.+ ..+++++|+|
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~--~~~i~lvDtp 79 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLA--LIPVKMVDVA 79 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEE--EEEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcc--eEEEEEEECC
Confidence 689999999999999999999986668999999999999754 34433322110 011111 1358999999
Q ss_pred ccccccccCccccchHHHHHHHHHHHHHHHhhcCCCc--eeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 018809 97 GLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPD--IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMK 174 (350)
Q Consensus 97 g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~--vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~ 174 (350)
|+..+++.+.+++++++..++.+|++++|+|++.+.+ -.+.+ ..||..+++.++.|+.+++++.+++++.++.+...
T Consensus 80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~-~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~~~ 158 (397)
T 1wxq_A 80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTD-YHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIK 158 (397)
T ss_dssp ---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCS-CCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTT
T ss_pred CcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccC-CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 9988777777788888888999999999999986422 11222 56999999999999999999999988877764332
Q ss_pred hcccccHH-HH----------HHHHHHHHHHhhcCCccccCCCChhHHHHHHHhhhhhcCCcchhcccchhhhhhhcccC
Q 018809 175 RSNDKQLK-IE----------HELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKF 243 (350)
Q Consensus 175 ~~~~h~~~-~~----------~~l~~~i~~~L~~g~~~~~~~~t~~~~e~i~~~~~~~~kp~~~~~n~~~~~~~~~~~~~ 243 (350)
.++ .... .+ .+.+.+++..+..+.+. .+|++++.+.+..+.+.+.+|++|++|+.|.. . +.+
T Consensus 159 ~~~-~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~--~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~-~---~~~ 231 (397)
T 1wxq_A 159 LQK-IKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDP--TKWSQDDLLAFASEIRRVNKPMVIAANKADAA-S---DEQ 231 (397)
T ss_dssp SSC-CCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCG--GGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS-C---HHH
T ss_pred hcC-ccHHHHHHHHhcccCCCHHHHHHHHHHhccCCcc--ccCCHHHHHHHHHhhhccCCCEEEEEeCcccc-c---hHH
Confidence 211 1111 11 23455666667777663 37888887778788888899999999999754 1 234
Q ss_pred hhHHHHHHHhhCCCeEEEecHHHHHHhcCC---------------------ChhHHH-------HHHHhcCCCCcHHHHH
Q 018809 244 LPKIHAWVQEHGGEQIIPFSCALERNLADM---------------------PPDEAA-------KYCEENKVQSALPKII 295 (350)
Q Consensus 244 ~~~i~~~~~~~~~~~~v~~sa~~e~~l~~l---------------------~~~~~~-------~~~~~~~~~~~l~~li 295 (350)
++++.+..... +.+++++||..|.++.+| +++++. +|+..+| ++|++++|
T Consensus 232 l~~l~~~~~~~-~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~~~e~ire~~l~~~g-~~g~~~~i 309 (397)
T 1wxq_A 232 IKRLVREEEKR-GYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFG-STGVQEVI 309 (397)
T ss_dssp HHHHHHHHHHT-TCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHHHHTSSSS-SCSHHHHH
T ss_pred HHHHHHHHhhc-CCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHHHHHHHHHHHHHHhC-cchHHHHH
Confidence 55665544332 568999999999999874 333333 5666777 89999999
Q ss_pred H-HHHhhcCCceeeccCC----------CCeeeeecCCCCChhhhhhccccccccCeeEEE
Q 018809 296 K-TGFSAINLIYFFTAGP----------DEVKCWQIRRQTKAPQAAGTIHTDFERGFICAE 345 (350)
Q Consensus 296 ~-~~~~~l~li~~ft~~~----------~e~~a~~~~~gsta~~~A~~IHsd~~~~fi~A~ 345 (350)
+ ++|++|+||+|||+|+ +|++||++++|+||+|+|++|||||+++|+||+
T Consensus 310 ~~~~~~~L~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~ 370 (397)
T 1wxq_A 310 NRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAI 370 (397)
T ss_dssp HHHHHTTSCEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEE
T ss_pred HHHHHHHhCCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhH
Confidence 5 6799999999999873 467999999999999999999999999999995
No 6
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-42 Score=329.81 Aligned_cols=265 Identities=18% Similarity=0.263 Sum_probs=180.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~~ 104 (350)
..|||||.||+|||||||+|||....+++|||||+.|+.|.+.++|. +++++|+||+..+++.
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~-----------------~i~l~D~pGl~~~a~~ 135 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGA-----------------KIQMLDLPGIIDGAKD 135 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTE-----------------EEEEEECGGGCCC---
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCc-----------------EEEEEeCCCccCCchh
Confidence 48999999999999999999999988899999999999999999873 5899999999999988
Q ss_pred CccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHH
Q 018809 105 GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIE 184 (350)
Q Consensus 105 ~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~ 184 (350)
+.++++++++.++.+|++++|+|++ +|..+.+.+..|+...++...++.. .+.... .+.
T Consensus 136 ~~~~g~~~l~~i~~ad~il~vvD~~------------~p~~~~~~i~~EL~~~~~~l~~k~~-----~i~~nK-~d~--- 194 (376)
T 4a9a_A 136 GRGRGKQVIAVARTCNLLFIILDVN------------KPLHHKQIIEKELEGVGIRLNKTPP-----DILIKK-KEK--- 194 (376)
T ss_dssp --CHHHHHHHHHHHCSEEEEEEETT------------SHHHHHHHHHHHHHHTTEEETCCCC-----CEEEEE-CSS---
T ss_pred hhHHHHHHHHHHHhcCccccccccC------------ccHHHHHHHHHHHHHhhHhhccCCh-----hhhhhH-hhh---
Confidence 8899999999999999999988873 6777777776654433321111000 000000 000
Q ss_pred HHHHHHHHHHhhcCCccccCCCChhHHHHHHHhhhhhcCCcchhcccchhhhhhhcccChhHHHHHHHhhCCCeEEEecH
Q 018809 185 HELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSC 264 (350)
Q Consensus 185 ~~l~~~i~~~L~~g~~~~~~~~t~~~~e~i~~~~~~~~kp~~~~~n~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~sa 264 (350)
.-++-........+++++...+....+++.+|++|.+|+.++++.+ .+... .+ ...+++++++
T Consensus 195 --------~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d-------~~~~~-~~-~~~p~i~v~n 257 (376)
T 4a9a_A 195 --------GGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLID-------VLEAS-SR-RYMPAIYVLN 257 (376)
T ss_dssp --------SCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHH-------HHTTT-TC-EEECEEEEEE
T ss_pred --------hhhhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHHH-------HHHHH-Hh-hccceEEEEe
Confidence 0000001111223455666555566677888888888887765421 11110 00 1235566665
Q ss_pred HHHHHhcCCChhHHHH------HHHhcC-CCCcHHHHHHHHHhhcCCceeeccCCCCeeeeecCCC-----CChhhhhhc
Q 018809 265 ALERNLADMPPDEAAK------YCEENK-VQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQ-----TKAPQAAGT 332 (350)
Q Consensus 265 ~~e~~l~~l~~~~~~~------~~~~~~-~~~~l~~li~~~~~~l~li~~ft~~~~e~~a~~~~~g-----sta~~~A~~ 332 (350)
+.+. ++.++... |+..++ .+++|++|++++|++||||+|||+||+|+||||++.| +|+.|+|+.
T Consensus 258 Kid~----~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~~~a~~at~~D~a~~ 333 (376)
T 4a9a_A 258 KIDS----LSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQ 333 (376)
T ss_dssp CGGG----SCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEEEBTTBCBHHHHHHH
T ss_pred cccc----cCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCccccccCCCCcHHHHHHH
Confidence 4421 11122111 112234 4889999999999999999999999999999997654 556677999
Q ss_pred cccccccCeeEEEEEe
Q 018809 333 IHTDFERGFICAEVVA 348 (350)
Q Consensus 333 IHsd~~~~fi~A~v~~ 348 (350)
||+||+++|+||+||+
T Consensus 334 ih~d~~~~F~~a~v~G 349 (376)
T 4a9a_A 334 IHKSLVDDFRNALVYG 349 (376)
T ss_dssp HCGGGGGGEEEEEEES
T ss_pred HHHHHHHhhhHhhhcC
Confidence 9999999999999995
No 7
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.73 E-value=1.7e-19 Score=165.99 Aligned_cols=173 Identities=17% Similarity=0.261 Sum_probs=112.5
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCC-CC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPK-SA 85 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~-~~ 85 (350)
-++++.++++|+++||+||||||||||+++|+|+ .+|.+|.|.++|+++... .. .|.++ ..
T Consensus 27 L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~ 95 (266)
T 4g1u_C 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY-----------LSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSE 95 (266)
T ss_dssp EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS-----------SCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCC
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCEECCcCCHHHHhheEEEEecCCc
Confidence 3678899999999999999999999999999999 689999999999765321 11 12222 22
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHHHH-----------------HHHHHhhc-C------CCceeeecCCC
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG-----------------IFHVLRAF-E------DPDIIHVDDSV 141 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~-----------------~l~vv~a~-~------~~~vl~ld~~~ 141 (350)
....+++.|+..+............+..+.+...++ -+.+++++ . +|+++++|
T Consensus 96 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllD--- 172 (266)
T 4g1u_C 96 LAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLD--- 172 (266)
T ss_dssp CCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEEC---
T ss_pred cCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEe---
Confidence 223456666654432211110000011111111110 15677777 5 99999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|......+...+..+.+. -...+... +|++..+..+||++ .+|.+|+++..++
T Consensus 173 EPts~LD~~~~~~i~~~l~~l~~~---~~~tvi~v-tHdl~~~~~~~d~v-~vl~~G~i~~~g~ 231 (266)
T 4g1u_C 173 EPTSALDLYHQQHTLRLLRQLTRQ---EPLAVCCV-LHDLNLAALYADRI-MLLAQGKLVACGT 231 (266)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHH---SSEEEEEE-CSCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred CccccCCHHHHHHHHHHHHHHHHc---CCCEEEEE-EcCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 999999999876665554333211 00111122 49999999999999 8999999887654
No 8
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.72 E-value=2.3e-19 Score=171.21 Aligned_cols=172 Identities=17% Similarity=0.245 Sum_probs=115.1
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--------H----hhcc
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--------C----QLFK 81 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--------~----~~~~ 81 (350)
-+.++.++++|+++||+||||||||||+++|+|+ .+|++|.|.++|+++..+ . .+++
T Consensus 44 L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL-----------~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q 112 (366)
T 3tui_C 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-----------ERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ 112 (366)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECS
T ss_pred EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeC
Confidence 4678899999999999999999999999999999 689999999999765321 1 1222
Q ss_pred CCCCCCcceeeeeecccccccccC--cc---ccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCC
Q 018809 82 PKSAVPAFLEIHDIAGLVRGAHEG--QG---LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 82 ~~~~~~~~l~~~D~~g~~~~~~~~--~~---~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~ 141 (350)
.. .....+++.|+..+....... .. .....++.+...+. -+.+++|+ .+|+++++|
T Consensus 113 ~~-~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlD--- 188 (366)
T 3tui_C 113 HF-NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD--- 188 (366)
T ss_dssp SC-CCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEE---
T ss_pred CC-ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE---
Confidence 22 233345666665543211100 00 01111222211111 16788888 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|......++..+..+.+. ....+... +|++..+..+||++ .+|.+|+++..++
T Consensus 189 EPTs~LD~~~~~~i~~lL~~l~~~---~g~Tii~v-THdl~~~~~~aDrv-~vl~~G~iv~~g~ 247 (366)
T 3tui_C 189 QATSALDPATTRSILELLKDINRR---LGLTILLI-THEMDVVKRICDCV-AVISNGELIEQDT 247 (366)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHH---SCCEEEEE-ESCHHHHHHHCSEE-EEEETTEEEECCB
T ss_pred CCCccCCHHHHHHHHHHHHHHHHh---CCCEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 999999999976666654433221 11111122 49999999999999 8999999887664
No 9
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.71 E-value=1.1e-18 Score=166.52 Aligned_cols=173 Identities=17% Similarity=0.190 Sum_probs=115.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchh----H-------HHhhcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE----W-------LCQLFK 81 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~----~-------l~~~~~ 81 (350)
.-+.++.++++|++++|+||||||||||+++|+|+ .+|++|.|.++|+++. . ++.+++
T Consensus 19 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ 87 (359)
T 3fvq_A 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF-----------EQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQ 87 (359)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEEEESSSCBCCGGGSCCEEECT
T ss_pred EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCCcEEEECCEECcccccccchhhCCEEEEeC
Confidence 34678899999999999999999999999999999 6899999999997651 1 111222
Q ss_pred CCCCCCcceeeeeecccccccccC--ccc---cchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecCCC
Q 018809 82 PKSAVPAFLEIHDIAGLVRGAHEG--QGL---GNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 82 ~~~~~~~~l~~~D~~g~~~~~~~~--~~~---~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~~~ 141 (350)
.. ..+..+++.|+..+....... ... ....++.+...+.. +.+++|+ .+|+++++|
T Consensus 88 ~~-~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD--- 163 (359)
T 3fvq_A 88 EG-VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD--- 163 (359)
T ss_dssp TC-CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---
T ss_pred CC-cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---
Confidence 22 333456777777664322110 000 11112222111111 6688888 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|....+.+...+..+.+ +....+.. .+|++.++..+||+| .+|.+|+++..++
T Consensus 164 EPts~LD~~~r~~l~~~l~~~~~---~~g~tvi~-vTHd~~ea~~~aDri-~vl~~G~i~~~g~ 222 (359)
T 3fvq_A 164 EPFSALDEQLRRQIREDMIAALR---ANGKSAVF-VSHDREEALQYADRI-AVMKQGRILQTAS 222 (359)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHH---HTTCEEEE-ECCCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred CCcccCCHHHHHHHHHHHHHHHH---hCCCEEEE-EeCCHHHHHHHCCEE-EEEECCEEEEEeC
Confidence 99999999887655554332221 11111212 249999999999999 9999999887654
No 10
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.70 E-value=6.6e-19 Score=169.08 Aligned_cols=172 Identities=16% Similarity=0.199 Sum_probs=115.0
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-------hhccCCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-------~~~~~~~~~ 86 (350)
-+.++.+++.|++++|+||||||||||+++|+|+ .+|++|.|.++|+++.... .+|+.. ..
T Consensus 19 L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~-~l 86 (381)
T 3rlf_A 19 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL-----------ETITSGDLFIGEKRMNDTPPAERGVGMVFQSY-AL 86 (381)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTCCGGGSCEEEECTTC-CC
T ss_pred EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC-----------CCCCCeEEEECCEECCCCCHHHCCEEEEecCC-cC
Confidence 3678899999999999999999999999999999 6899999999997654321 123322 23
Q ss_pred CcceeeeeecccccccccC--c---cccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCch
Q 018809 87 PAFLEIHDIAGLVRGAHEG--Q---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRD 146 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~~--~---~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~~ 146 (350)
+..+++.|+..+....... . ......++.+...+. -+.+++|+ .+|+++++| ||++.
T Consensus 87 ~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD---EPts~ 163 (381)
T 3rlf_A 87 YPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD---EPLSN 163 (381)
T ss_dssp CTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE---STTTT
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE---CCCcC
Confidence 3456777776654211100 0 000111111111111 15577777 799999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 147 ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+|....+.+...+..+.+. ....+.. .+|++.++..+||+| .+|.+|+++..++
T Consensus 164 LD~~~~~~l~~~l~~l~~~---~g~tii~-vTHd~~ea~~~aDri-~vl~~G~i~~~g~ 217 (381)
T 3rlf_A 164 LDAALRVQMRIEISRLHKR---LGRTMIY-VTHDQVEAMTLADKI-VVLDAGRVAQVGK 217 (381)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HCCEEEE-ECSCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHh---CCCEEEE-EECCHHHHHHhCCEE-EEEECCEEEEEeC
Confidence 9999876666655443322 1111212 249999999999999 9999999886654
No 11
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.69 E-value=2.2e-18 Score=155.72 Aligned_cols=173 Identities=18% Similarity=0.227 Sum_probs=110.3
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----H----Hh--hccC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----L----CQ--LFKP 82 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l----~~--~~~~ 82 (350)
-..++.++.+|+++||+||||||||||+++|+|+ .+|++|.|.++|.++.. . .. .|.+
T Consensus 21 L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~ 89 (235)
T 3tif_A 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL-----------DKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVF 89 (235)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEEC
T ss_pred EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCceEEEECCEEcccCCHHHHHHHhhccEEEEe
Confidence 3678899999999999999999999999999999 68999999999975421 1 11 1222
Q ss_pred CC-CCCcceeeeeeccccccccc--C---ccccchHHHHHHHH---HH---------------HHHHHhhc-CCCceeee
Q 018809 83 KS-AVPAFLEIHDIAGLVRGAHE--G---QGLGNSFLSHIRAV---DG---------------IFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 83 ~~-~~~~~l~~~D~~g~~~~~~~--~---~~~~~~~l~~l~~~---d~---------------~l~vv~a~-~~~~vl~l 137 (350)
|. .....+++.|+..+...... . .....+..+.+... +. -+.+++|+ .+|+++++
T Consensus 90 Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llll 169 (235)
T 3tif_A 90 QQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILA 169 (235)
T ss_dssp TTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 22 23334566666544211000 0 00001111111111 10 15677887 89999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
| ||++.+|....+.+...+..+.+. ....+... +|++.. ..+||++ .+|.+|+++..++.
T Consensus 170 D---EPts~LD~~~~~~i~~~l~~l~~~---~g~tvi~v-tHd~~~-~~~~d~i-~~l~~G~i~~~~~~ 229 (235)
T 3tif_A 170 D---QPTWALDSKTGEKIMQLLKKLNEE---DGKTVVVV-THDINV-ARFGERI-IYLKDGEVEREEKL 229 (235)
T ss_dssp E---STTTTSCHHHHHHHHHHHHHHHHH---HCCEEEEE-CSCHHH-HTTSSEE-EEEETTEEEEEEEC
T ss_pred e---CCcccCCHHHHHHHHHHHHHHHHH---cCCEEEEE-cCCHHH-HHhCCEE-EEEECCEEEEEcCh
Confidence 9 999999999987666654433221 11122122 499974 5789999 88999998765443
No 12
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.69 E-value=4.6e-18 Score=154.11 Aligned_cols=171 Identities=12% Similarity=0.143 Sum_probs=113.3
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----H-Hh--hccCCC-
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----L-CQ--LFKPKS- 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l-~~--~~~~~~- 84 (350)
-++++.++++|++++|+||||||||||+++|+|. .+|++|.|.++|.++.. . .. .|.++.
T Consensus 22 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 90 (240)
T 1ji0_A 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL-----------VRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGR 90 (240)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSC
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCceEEECCEECCCCCHHHHHhCCEEEEecCC
Confidence 3677889999999999999999999999999999 68999999999976532 1 11 233332
Q ss_pred CCCcceeeeeecccccccccCcc----ccchHHHHHH-HHHH--------------HHHHHhhc-CCCceeeecCCCCCC
Q 018809 85 AVPAFLEIHDIAGLVRGAHEGQG----LGNSFLSHIR-AVDG--------------IFHVLRAF-EDPDIIHVDDSVDPV 144 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~~~----~~~~~l~~l~-~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~ 144 (350)
..+..+++.|+..+......... ....+++.+. ..+. -+.+++++ .+|+++++| ||+
T Consensus 91 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD---EPt 167 (240)
T 1ji0_A 91 RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMD---EPS 167 (240)
T ss_dssp CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEE---CTT
T ss_pred ccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---CCc
Confidence 23334566666655321111110 1111222221 2221 16688888 899999999 999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 145 ~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
+++|....+.+...+..+.+ ....+... +|+...+..+||++ .+|.+|+++..+
T Consensus 168 s~LD~~~~~~l~~~l~~~~~----~g~tvi~v-tHd~~~~~~~~d~v-~~l~~G~i~~~g 221 (240)
T 1ji0_A 168 LGLAPILVSEVFEVIQKINQ----EGTTILLV-EQNALGALKVAHYG-YVLETGQIVLEG 221 (240)
T ss_dssp TTCCHHHHHHHHHHHHHHHH----TTCCEEEE-ESCHHHHHHHCSEE-EEEETTEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHHH----CCCEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEEc
Confidence 99999997666655433211 11112122 49999999999999 888999887554
No 13
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.69 E-value=8.7e-19 Score=160.89 Aligned_cols=172 Identities=16% Similarity=0.236 Sum_probs=113.7
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchh------------------H
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE------------------W 75 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~------------------~ 75 (350)
-.+++.++++|+++||+||||||||||+++|+|. .+|++|.|.++|.++. .
T Consensus 22 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~ 90 (262)
T 1b0u_A 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL-----------EKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRL 90 (262)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCEEECTTSSEEESCHHHHHH
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEccccccccccccccChhhHHH
Confidence 3678899999999999999999999999999999 6899999999987653 1
Q ss_pred HHh--hccCCC-CCCcceeeeeeccccc-cccc-C----ccccchHHHHHHHHHH---------------HHHHHhhc-C
Q 018809 76 LCQ--LFKPKS-AVPAFLEIHDIAGLVR-GAHE-G----QGLGNSFLSHIRAVDG---------------IFHVLRAF-E 130 (350)
Q Consensus 76 l~~--~~~~~~-~~~~~l~~~D~~g~~~-~~~~-~----~~~~~~~l~~l~~~d~---------------~l~vv~a~-~ 130 (350)
+.. .|.++. ..+..+++.|+..+.. .... . ......+++.+...+. -+.+++|+ .
T Consensus 91 ~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~ 170 (262)
T 1b0u_A 91 LRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAM 170 (262)
T ss_dssp HHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHT
T ss_pred HhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 111 133332 2333456666654421 0000 0 0011112222222222 15678888 8
Q ss_pred CCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 131 DPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 131 ~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+|+++++| ||++++|....+.+...+..+.+ + ...+... +|+...+..+||++ .+|.+|+++..++
T Consensus 171 ~p~lllLD---EPts~LD~~~~~~~~~~l~~l~~---~-g~tvi~v-tHd~~~~~~~~d~v-~~l~~G~i~~~g~ 236 (262)
T 1b0u_A 171 EPDVLLFD---EPTSALDPELVGEVLRIMQQLAE---E-GKTMVVV-THEMGFARHVSSHV-IFLHQGKIEEEGD 236 (262)
T ss_dssp CCSEEEEE---STTTTSCHHHHHHHHHHHHHHHH---T-TCCEEEE-CSCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred CCCEEEEe---CCCccCCHHHHHHHHHHHHHHHh---C-CCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 99999999 99999999987666655443321 1 1122122 49999999999999 8899998876543
No 14
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.68 E-value=2.8e-18 Score=157.50 Aligned_cols=172 Identities=16% Similarity=0.207 Sum_probs=111.7
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchh-------HHHh--hccCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE-------WLCQ--LFKPKS 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~-------~l~~--~~~~~~ 84 (350)
-++++.++++|+++||+||||||||||+++|+|+ .+|++|.|.++|.++. .+.. .|.+|.
T Consensus 40 L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~ 108 (263)
T 2olj_A 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL-----------EDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQR 108 (263)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSS
T ss_pred EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC-----------CCCCCcEEEECCEECCCccccHHHHhCcEEEEeCC
Confidence 3578899999999999999999999999999999 6899999999997652 1111 133332
Q ss_pred -CCCcceeeeeeccccc-cccc-C-c---cccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCC
Q 018809 85 -AVPAFLEIHDIAGLVR-GAHE-G-Q---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVD 142 (350)
Q Consensus 85 -~~~~~l~~~D~~g~~~-~~~~-~-~---~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~e 142 (350)
..+..+++.|+..+.. .... . . .....+++.+...+. -+.+++++ .+|+++++| |
T Consensus 109 ~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLD---E 185 (263)
T 2olj_A 109 FNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFD---E 185 (263)
T ss_dssp CCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---S
T ss_pred CcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEe---C
Confidence 2333456666654421 0000 0 0 000111111111111 15677887 899999999 9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 143 P~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|++++|....+.+...+..+.+ + ...+... +|+...+..+||++ .+|.+|+++..++
T Consensus 186 Pts~LD~~~~~~~~~~l~~l~~---~-g~tvi~v-tHd~~~~~~~~d~v-~~l~~G~i~~~g~ 242 (263)
T 2olj_A 186 PTSALDPEMVGEVLSVMKQLAN---E-GMTMVVV-THEMGFAREVGDRV-LFMDGGYIIEEGK 242 (263)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHH---T-TCEEEEE-CSCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred CcccCCHHHHHHHHHHHHHHHh---C-CCEEEEE-cCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9999999997666655433311 1 1122122 49999999999999 8899998876543
No 15
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.68 E-value=2.5e-18 Score=164.23 Aligned_cols=173 Identities=13% Similarity=0.152 Sum_probs=115.6
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-----hccCC-CCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----LFKPK-SAVP 87 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-----~~~~~-~~~~ 87 (350)
-+.++.++++|++++|+||||||||||+++|+|+ .+|++|.|.++|+++..+.. .|.+| ...+
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~ 87 (359)
T 2yyz_A 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI-----------YKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALY 87 (359)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGTTEEEECSSCCCC
T ss_pred EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC-----------CCCCccEEEECCEECCCCChhhCcEEEEecCcccC
Confidence 3678899999999999999999999999999999 68999999999976533211 12222 2233
Q ss_pred cceeeeeecccccccccC-----ccccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCchh
Q 018809 88 AFLEIHDIAGLVRGAHEG-----QGLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~~~-----~~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~~l 147 (350)
..+++.|+..+....... .......++.+...+. -+.+++|+ .+|+++++| ||++.+
T Consensus 88 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD---EP~s~L 164 (359)
T 2yyz_A 88 PHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFD---EPLSNL 164 (359)
T ss_dssp TTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTTS
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCcccC
Confidence 456777776654221110 0001111221111111 15688888 899999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 148 d~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|....+.+...+..+.+. ....+.. .+|+..++..+||++ .+|++|+++..++
T Consensus 165 D~~~r~~l~~~l~~l~~~---~g~tvi~-vTHd~~~~~~~adri-~vl~~G~i~~~g~ 217 (359)
T 2yyz_A 165 DANLRMIMRAEIKHLQQE---LGITSVY-VTHDQAEAMTMASRI-AVFNQGKLVQYGT 217 (359)
T ss_dssp CHHHHHHHHHHHHHHHHH---HCCEEEE-EESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHh---cCCEEEE-EcCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 999876666654433221 1111212 249999999999999 8999999876554
No 16
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.68 E-value=1.8e-18 Score=164.65 Aligned_cols=173 Identities=13% Similarity=0.194 Sum_probs=114.7
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH----h-hccCCC-CCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----Q-LFKPKS-AVP 87 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~----~-~~~~~~-~~~ 87 (350)
-..++.++++|++++|+||||||||||+++|+|+ .+|++|.|.++|+.+..+. . .|.+|. ..+
T Consensus 16 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~ 84 (348)
T 3d31_A 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF-----------HVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLF 84 (348)
T ss_dssp EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCHHHHTCEEECTTCCCC
T ss_pred EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC-----------CCCCCcEEEECCEECCCCchhhCcEEEEecCcccC
Confidence 4678889999999999999999999999999999 6899999999997653211 1 122222 233
Q ss_pred cceeeeeeccccccccc-Cc-cccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCchhHHH
Q 018809 88 AFLEIHDIAGLVRGAHE-GQ-GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLEVI 150 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~~-~~-~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~ 150 (350)
..+++.|+..+...... .. ......++.+...+. -+.+++|+ .+|+++++| ||++.+|..
T Consensus 85 ~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLD---EP~s~LD~~ 161 (348)
T 3d31_A 85 PHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLD---EPLSALDPR 161 (348)
T ss_dssp TTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEE---SSSTTSCHH
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CccccCCHH
Confidence 45677777655321110 00 001111111111111 16688888 899999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 151 SAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 151 ~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
..+.+...+..+.+. ....+.. .+|+..++..++|++ .+|++|+++..++
T Consensus 162 ~~~~l~~~l~~l~~~---~g~tii~-vTHd~~~~~~~adri-~vl~~G~i~~~g~ 211 (348)
T 3d31_A 162 TQENAREMLSVLHKK---NKLTVLH-ITHDQTEARIMADRI-AVVMDGKLIQVGK 211 (348)
T ss_dssp HHHHHHHHHHHHHHH---TTCEEEE-EESCHHHHHHHCSEE-EEESSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHh---cCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 876666654433221 1111112 249999999999999 8899999876544
No 17
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.68 E-value=6.1e-19 Score=162.90 Aligned_cols=175 Identities=14% Similarity=0.203 Sum_probs=113.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchh--H-----HHh--hccCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE--W-----LCQ--LFKPK 83 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~--~-----l~~--~~~~~ 83 (350)
.-+.++.++++|+++||+||||||||||+++|+|+ .+|.+|.|.++|+++. . +.. .|.+|
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl-----------~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q 91 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI-----------LKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQ 91 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCCSHHHHHHHHHSEEEECS
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC-----------CCCCCeEEEECCEECCcccccHHHHhCcEEEEEc
Confidence 34678899999999999999999999999999999 6899999999997652 1 111 12333
Q ss_pred CC--CCcceeeeeecccccccccC--ccccchHHHHHHHH---HH--------------HHHHHhhc-CCCceeeecCCC
Q 018809 84 SA--VPAFLEIHDIAGLVRGAHEG--QGLGNSFLSHIRAV---DG--------------IFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 84 ~~--~~~~l~~~D~~g~~~~~~~~--~~~~~~~l~~l~~~---d~--------------~l~vv~a~-~~~~vl~ld~~~ 141 (350)
.. ....+++.|...+....... .....+..+.+... +. -+.+++|+ .+|+++++|
T Consensus 92 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLD--- 168 (275)
T 3gfo_A 92 DPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILD--- 168 (275)
T ss_dssp SGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEE---
T ss_pred CcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEE---
Confidence 21 11234566655443211100 00000111111111 10 15677887 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
||++++|......+...+..+.+ +....+... +|++..+..+||++ .+|.+|+++..++.
T Consensus 169 EPts~LD~~~~~~i~~~l~~l~~---~~g~tvi~v-tHdl~~~~~~~drv-~~l~~G~i~~~g~~ 228 (275)
T 3gfo_A 169 EPTAGLDPMGVSEIMKLLVEMQK---ELGITIIIA-THDIDIVPLYCDNV-FVMKEGRVILQGNP 228 (275)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHH---HHCCEEEEE-ESCCSSGGGGCSEE-EEEETTEEEEEECH
T ss_pred CccccCCHHHHHHHHHHHHHHHh---hCCCEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEECCH
Confidence 99999999997666665443321 111122122 49999999999999 89999999876653
No 18
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.67 E-value=1.4e-18 Score=165.74 Aligned_cols=174 Identities=16% Similarity=0.181 Sum_probs=114.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-----hccCCC-CC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----LFKPKS-AV 86 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-----~~~~~~-~~ 86 (350)
.-++++.++++|++++|+||||||||||+++|+|+ .+|++|.|.++|+++..... .|.+|. ..
T Consensus 30 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l 98 (355)
T 1z47_A 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL-----------ERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYAL 98 (355)
T ss_dssp CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTCCGGGSSEEEECGGGCC
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCccEEEECCEECCcCChhhCcEEEEecCccc
Confidence 34678899999999999999999999999999999 68999999999976532211 111221 22
Q ss_pred Ccceeeeeeccccccccc-C-c---cccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCch
Q 018809 87 PAFLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRD 146 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~-~-~---~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~~ 146 (350)
+..+++.|+..+...... . . .....+++.+...+. -+.+++|+ .+|+++++| ||++.
T Consensus 99 ~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP~s~ 175 (355)
T 1z47_A 99 FQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFD---EPFAA 175 (355)
T ss_dssp CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTCC
T ss_pred CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe---CCccc
Confidence 334666666554321110 0 0 000111111111111 15677887 899999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 147 ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+|....+.+...+..+.+. ....+... +|+..++..+||++ .+|++|+++..++
T Consensus 176 LD~~~r~~l~~~l~~l~~~---~g~tvi~v-THd~~~a~~~adri-~vl~~G~i~~~g~ 229 (355)
T 1z47_A 176 IDTQIRRELRTFVRQVHDE---MGVTSVFV-THDQEEALEVADRV-LVLHEGNVEQFGT 229 (355)
T ss_dssp SSHHHHHHHHHHHHHHHHH---HTCEEEEE-CSCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHh---cCCEEEEE-CCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 9999876666655433221 11122122 49999999999999 8999999876554
No 19
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.67 E-value=5.4e-18 Score=153.60 Aligned_cols=172 Identities=15% Similarity=0.233 Sum_probs=110.1
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-----hccCCC-CCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----LFKPKS-AVP 87 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-----~~~~~~-~~~ 87 (350)
-.+++.++++ +++||+||||||||||+++|+|+ .+|++|.|.++|.++..... .|.++. ..+
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~ 82 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGI-----------VKPDRGEVRLNGADITPLPPERRGIGFVPQDYALF 82 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCC
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEECCEECCcCchhhCcEEEEcCCCccC
Confidence 4578889999 99999999999999999999999 68999999999976532110 122222 222
Q ss_pred cceeeeeecccccccccCccccchHHHHHHHHH-----------------HHHHHHhhc-CCCceeeecCCCCCCchhHH
Q 018809 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD-----------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEV 149 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d-----------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~ 149 (350)
..+++.|+..+............++.+.++..+ .-+.+++++ .+|+++++| ||++++|.
T Consensus 83 ~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD---EPts~LD~ 159 (240)
T 2onk_A 83 PHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD---EPLSAVDL 159 (240)
T ss_dssp TTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE---STTSSCCH
T ss_pred CCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCCH
Confidence 334555554442211000000000111111111 015677887 899999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 150 ISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 150 ~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
...+.+...+..+.+. ....+... +|+...+..+||++ .+|.+|+++..++
T Consensus 160 ~~~~~~~~~l~~l~~~---~g~tvi~v-tHd~~~~~~~~d~i-~~l~~G~i~~~g~ 210 (240)
T 2onk_A 160 KTKGVLMEELRFVQRE---FDVPILHV-THDLIEAAMLADEV-AVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHHHHHHH---HTCCEEEE-ESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHHHh---cCCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9987666654433221 11122122 49999999999999 8899999876543
No 20
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.67 E-value=3.3e-18 Score=164.15 Aligned_cols=172 Identities=16% Similarity=0.231 Sum_probs=112.3
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-------hhccCCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-------QLFKPKSAV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-------~~~~~~~~~ 86 (350)
-..++.+++.|++++|+||||||||||+++|+|+ .+|++|.|.++|+++..+. .+++. ...
T Consensus 27 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~-~~l 94 (372)
T 1v43_A 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL-----------EEPTEGRIYFGDRDVTYLPPKDRNISMVFQS-YAV 94 (372)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGGTEEEEEC-----
T ss_pred EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC-----------CCCCceEEEECCEECCCCChhhCcEEEEecC-ccc
Confidence 3678899999999999999999999999999999 6899999999997653221 12222 122
Q ss_pred Ccceeeeeeccccccccc-Cc-c---ccchHHHHHHHHHHH--------------HHHHhhc-CCCceeeecCCCCCCch
Q 018809 87 PAFLEIHDIAGLVRGAHE-GQ-G---LGNSFLSHIRAVDGI--------------FHVLRAF-EDPDIIHVDDSVDPVRD 146 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~-~~-~---~~~~~l~~l~~~d~~--------------l~vv~a~-~~~~vl~ld~~~eP~~~ 146 (350)
+..+++.|+..+...... .. . ....+++.+...+.. +.+++|+ .+|+++++| ||++.
T Consensus 95 ~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP~s~ 171 (372)
T 1v43_A 95 WPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD---EPLSN 171 (372)
T ss_dssp --CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE---STTTT
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc---CCCcc
Confidence 335666676655422110 00 0 011111111111111 5678887 899999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 147 ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+|....+.+...+..+.+. ....+.. .+|+..++..+||++ .+|++|+++..++
T Consensus 172 LD~~~r~~l~~~l~~l~~~---~g~tvi~-vTHd~~~a~~~adri-~vl~~G~i~~~g~ 225 (372)
T 1v43_A 172 LDAKLRVAMRAEIKKLQQK---LKVTTIY-VTHDQVEAMTMGDRI-AVMNRGQLLQIGS 225 (372)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEE-EESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHh---CCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 9999876666655433221 1111212 249999999999999 8999999876554
No 21
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.66 E-value=3.2e-18 Score=163.63 Aligned_cols=173 Identities=12% Similarity=0.202 Sum_probs=114.3
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh-----hccCCC-CCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ-----LFKPKS-AVP 87 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~-----~~~~~~-~~~ 87 (350)
-..++.+++.|++++|+||||||||||+++|+|+ .+|++|.|.++|+++..+.. .|.+|. ..+
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~ 87 (362)
T 2it1_A 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI-----------YKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALY 87 (362)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCC
T ss_pred EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC-----------CCCCceEEEECCEECCcCCHhHCcEEEEecCcccC
Confidence 3678899999999999999999999999999999 68999999999976532211 122222 233
Q ss_pred cceeeeeeccccccccc-C-cc---ccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCchh
Q 018809 88 AFLEIHDIAGLVRGAHE-G-QG---LGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDL 147 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~~-~-~~---~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~~l 147 (350)
..+++.|+..+...... . .. .....++.+...+. -+.+++|+ .+|+++++| ||++.+
T Consensus 88 ~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---EP~s~L 164 (362)
T 2it1_A 88 PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD---EPLSNL 164 (362)
T ss_dssp TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---SGGGGS
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CccccC
Confidence 45677776655321110 0 00 00111111111110 15678887 899999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 148 EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 148 d~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|....+.+...+..+.+. ....+... +|+..++..++|++ .+|++|+++..++
T Consensus 165 D~~~r~~l~~~l~~l~~~---~g~tvi~v-THd~~~a~~~adri-~vl~~G~i~~~g~ 217 (362)
T 2it1_A 165 DALLRLEVRAELKRLQKE---LGITTVYV-THDQAEALAMADRI-AVIREGEILQVGT 217 (362)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEE-ESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHh---CCCEEEEE-CCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 999876666655433221 11112122 49999999999999 8999999876554
No 22
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.66 E-value=1.8e-18 Score=155.15 Aligned_cols=170 Identities=18% Similarity=0.160 Sum_probs=107.6
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH--------HH-h--hccC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW--------LC-Q--LFKP 82 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~--------l~-~--~~~~ 82 (350)
-.+++.++++|++++|+||||||||||+++|+|. .+|++|.|.++|.++.. +. . .|.+
T Consensus 20 l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~ 88 (224)
T 2pcj_A 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL-----------DAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVF 88 (224)
T ss_dssp EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS-----------SCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEEC
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEe
Confidence 3678889999999999999999999999999999 68999999999876421 11 1 2333
Q ss_pred CC-CCCcceeeeeeccccccccc-C-ccccchHHHHHHHHH-----------------HHHHHHhhc-CCCceeeecCCC
Q 018809 83 KS-AVPAFLEIHDIAGLVRGAHE-G-QGLGNSFLSHIRAVD-----------------GIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 83 ~~-~~~~~l~~~D~~g~~~~~~~-~-~~~~~~~l~~l~~~d-----------------~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
+. ..+..+++.|+..+...... . .....++.+.+...+ .-+.+++++ .+|+++++|
T Consensus 89 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD--- 165 (224)
T 2pcj_A 89 QFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFAD--- 165 (224)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEE---
T ss_pred cCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---
Confidence 32 22334556665543211100 0 000001111111111 115678888 899999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
||++++|....+.+...+..+.+ + ...+... +|+...+ .+||++ .+|.+|+++..+
T Consensus 166 EPt~~LD~~~~~~~~~~l~~l~~---~-g~tvi~v-tHd~~~~-~~~d~v-~~l~~G~i~~~g 221 (224)
T 2pcj_A 166 EPTGNLDSANTKRVMDIFLKINE---G-GTSIVMV-THERELA-ELTHRT-LEMKDGKVVGEI 221 (224)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHH---T-TCEEEEE-CSCHHHH-TTSSEE-EEEETTEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH---C-CCEEEEE-cCCHHHH-HhCCEE-EEEECCEEEEEe
Confidence 99999999987666555433221 1 1122122 4998876 789988 788888876543
No 23
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.66 E-value=3.7e-18 Score=163.97 Aligned_cols=172 Identities=15% Similarity=0.160 Sum_probs=114.1
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH------HHh-----hccCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LCQ-----LFKPK 83 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~------l~~-----~~~~~ 83 (350)
+.++.+++.|++++|+||||||||||+++|+|+ .+|++|.|.++|+++.. +.. .|.+|
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q 88 (372)
T 1g29_1 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL-----------EEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQ 88 (372)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS-----------SCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC-----------CCCCccEEEECCEECccccccccCCHhHCCEEEEeC
Confidence 578889999999999999999999999999999 68999999999976532 110 12222
Q ss_pred C-CCCcceeeeeeccccccccc-C-c---cccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCC
Q 018809 84 S-AVPAFLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVD 142 (350)
Q Consensus 84 ~-~~~~~l~~~D~~g~~~~~~~-~-~---~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~e 142 (350)
. ..+..+++.|+..+...... . . .....+++.+...+. -+.+++|+ .+|+++++| |
T Consensus 89 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD---E 165 (372)
T 1g29_1 89 SYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMD---E 165 (372)
T ss_dssp CCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEE---C
T ss_pred CCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEC---C
Confidence 2 23335667776655321110 0 0 001111222211111 15678888 899999999 9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 143 P~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|++.+|....+.+...+..+.+. ....+.. .+|+..++..+||++ .+|++|+++..++
T Consensus 166 P~s~LD~~~r~~l~~~l~~l~~~---~g~tvi~-vTHd~~~a~~~adri-~vl~~G~i~~~g~ 223 (372)
T 1g29_1 166 PLSNLDAKLRVRMRAELKKLQRQ---LGVTTIY-VTHDQVEAMTMGDRI-AVMNRGVLQQVGS 223 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHH---HTCEEEE-EESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred CCccCCHHHHHHHHHHHHHHHHh---cCCEEEE-ECCCHHHHHHhCCEE-EEEeCCEEEEeCC
Confidence 99999999876666654433221 1111212 249999999999999 8999999876554
No 24
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.66 E-value=2.4e-18 Score=157.53 Aligned_cols=173 Identities=14% Similarity=0.134 Sum_probs=112.8
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH------HHh--hccCCC-
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW------LCQ--LFKPKS- 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~------l~~--~~~~~~- 84 (350)
-++++.++++|+++||+||||||||||+++|+|. .+|++|.|.++|.++.. ... .|.+|.
T Consensus 23 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 91 (257)
T 1g6h_A 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF-----------LKADEGRVYFENKDITNKEPAELYHYGIVRTFQTP 91 (257)
T ss_dssp EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCC
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCC
Confidence 3678899999999999999999999999999999 68999999999976532 111 233333
Q ss_pred CCCcceeeeeeccccccc-ccC-----------cc------ccchHHHHHHHHHH--------------HHHHHhhc-CC
Q 018809 85 AVPAFLEIHDIAGLVRGA-HEG-----------QG------LGNSFLSHIRAVDG--------------IFHVLRAF-ED 131 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~-~~~-----------~~------~~~~~l~~l~~~d~--------------~l~vv~a~-~~ 131 (350)
..+..+++.|+..+.... ..+ .. ....+++.+...+. -+.+++++ .+
T Consensus 92 ~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~ 171 (257)
T 1g6h_A 92 QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTN 171 (257)
T ss_dssp GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred ccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcC
Confidence 223345666665443211 000 00 00111111111111 15677887 89
Q ss_pred CceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 132 PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 132 ~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
|+++++| ||++++|....+.+...+..+.+ + ...+... +|+...+..+||++ .+|.+|+++..++.
T Consensus 172 p~lllLD---EPts~LD~~~~~~l~~~l~~l~~---~-g~tvi~v-tHd~~~~~~~~d~v-~~l~~G~i~~~g~~ 237 (257)
T 1g6h_A 172 PKMIVMD---EPIAGVAPGLAHDIFNHVLELKA---K-GITFLII-EHRLDIVLNYIDHL-YVMFNGQIIAEGRG 237 (257)
T ss_dssp CSEEEEE---STTTTCCHHHHHHHHHHHHHHHH---T-TCEEEEE-CSCCSTTGGGCSEE-EEEETTEEEEEEES
T ss_pred CCEEEEe---CCccCCCHHHHHHHHHHHHHHHH---C-CCEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEEeCH
Confidence 9999999 99999999997666655433211 1 1112122 49999888999999 88899998765543
No 25
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.66 E-value=3.2e-18 Score=156.52 Aligned_cols=171 Identities=18% Similarity=0.237 Sum_probs=110.6
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH----HHh--hccCCC-CC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW----LCQ--LFKPKS-AV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~----l~~--~~~~~~-~~ 86 (350)
-++++.++.+|+++||+||||||||||+++|+|+ .+|++|.|.++|.++.. ... .|.++. ..
T Consensus 31 l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l 99 (256)
T 1vpl_A 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL-----------IKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGA 99 (256)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCC
T ss_pred EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEECCEECCccHHHHhhcEEEEcCCCCC
Confidence 3677899999999999999999999999999999 68999999999976532 111 123332 22
Q ss_pred Ccceeeeeeccccccccc-C-c---cccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCCCCch
Q 018809 87 PAFLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVDPVRD 146 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~-~-~---~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~~ 146 (350)
+..+++.|+..+...... . . .....+++.+...+. -+.+++++ .+|+++++| ||+++
T Consensus 100 ~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD---EPts~ 176 (256)
T 1vpl_A 100 YRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD---EPTSG 176 (256)
T ss_dssp CTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE---STTTT
T ss_pred CCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCccc
Confidence 334556665544211000 0 0 000111111111111 15677887 899999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 147 ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
+|......+...+..+.+ -...+... +|+...+..+||++ .+|.+|+++..+
T Consensus 177 LD~~~~~~l~~~l~~l~~----~g~tiiiv-tHd~~~~~~~~d~v-~~l~~G~i~~~g 228 (256)
T 1vpl_A 177 LDVLNAREVRKILKQASQ----EGLTILVS-SHNMLEVEFLCDRI-ALIHNGTIVETG 228 (256)
T ss_dssp CCHHHHHHHHHHHHHHHH----TTCEEEEE-ECCHHHHTTTCSEE-EEEETTEEEEEE
T ss_pred cCHHHHHHHHHHHHHHHh----CCCEEEEE-cCCHHHHHHHCCEE-EEEECCEEEEec
Confidence 999997666655433311 11112122 49999999999999 888999887654
No 26
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.65 E-value=2.9e-18 Score=163.68 Aligned_cols=173 Identities=15% Similarity=0.165 Sum_probs=114.1
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh-----hccCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ-----LFKPK 83 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~-----~~~~~ 83 (350)
-+.++.+++.|++++|+||||||||||+++|+|+ .+|++|.|.++|+++.. ... .|.+|
T Consensus 21 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl-----------~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q 89 (353)
T 1oxx_K 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGL-----------DVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQ 89 (353)
T ss_dssp EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS-----------SCCSEEEEEETTEEEEETTEESSCGGGSCEEEEET
T ss_pred EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECCEECcccccccCChhhCCEEEEeC
Confidence 3478899999999999999999999999999999 68999999999976532 110 11122
Q ss_pred -CCCCcceeeeeeccccccccc-C-c---cccchHHHHHHHHHH--------------HHHHHhhc-CCCceeeecCCCC
Q 018809 84 -SAVPAFLEIHDIAGLVRGAHE-G-Q---GLGNSFLSHIRAVDG--------------IFHVLRAF-EDPDIIHVDDSVD 142 (350)
Q Consensus 84 -~~~~~~l~~~D~~g~~~~~~~-~-~---~~~~~~l~~l~~~d~--------------~l~vv~a~-~~~~vl~ld~~~e 142 (350)
...+..+++.|+..+...... . . ......++.+...+. -+.+++|+ .+|+++++| |
T Consensus 90 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLD---E 166 (353)
T 1oxx_K 90 TWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLD---E 166 (353)
T ss_dssp TSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---S
T ss_pred CCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---C
Confidence 223345677777655422111 0 0 000111111111111 16678888 899999999 9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 143 P~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
|++.+|....+.+...+..+.+. ....+.. .+|+..++..+||++ .+|++|+++..++
T Consensus 167 P~s~LD~~~r~~l~~~l~~l~~~---~g~tvi~-vTHd~~~~~~~adri-~vl~~G~i~~~g~ 224 (353)
T 1oxx_K 167 PFSNLDARMRDSARALVKEVQSR---LGVTLLV-VSHDPADIFAIADRV-GVLVKGKLVQVGK 224 (353)
T ss_dssp TTTTSCGGGHHHHHHHHHHHHHH---HCCEEEE-EESCHHHHHHHCSEE-EEEETTEEEEEEC
T ss_pred CcccCCHHHHHHHHHHHHHHHHh---cCCEEEE-EeCCHHHHHHhCCEE-EEEECCEEEEEcC
Confidence 99999998876666654433221 1111212 249999999999999 8999999876554
No 27
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.65 E-value=8.5e-18 Score=153.09 Aligned_cols=171 Identities=16% Similarity=0.203 Sum_probs=108.9
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCC-
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKS- 84 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~- 84 (350)
.-.+++.++++|++++|+||||||||||+++|+|. .+|. |.|.++|.++... .. .|.++.
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl-----------~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 82 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-----------TSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQ 82 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCC
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCC-eEEEECCEECCcCCHHHHhceEEEECCCC
Confidence 34678889999999999999999999999999999 6889 9999999765321 11 233332
Q ss_pred CCCcceeeeeecccccccccCccccchHHHHHHHHH--------------HHHHHHhhc-CCCc-------eeeecCCCC
Q 018809 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPD-------IIHVDDSVD 142 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~-------vl~ld~~~e 142 (350)
..+..+++.|+..+.............+++.+...+ --+.+++++ .+|+ ++++| |
T Consensus 83 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD---E 159 (249)
T 2qi9_C 83 TPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD---E 159 (249)
T ss_dssp CCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES---S
T ss_pred ccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE---C
Confidence 223345666655443211000000001111111111 014566666 6888 99999 9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 143 PVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 143 P~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
|++++|....+.+...+..+.+ + ...+... +|+...+..+||++ .+|.+|+++..+
T Consensus 160 Pts~LD~~~~~~l~~~l~~l~~---~-g~tviiv-tHd~~~~~~~~d~v-~~l~~G~i~~~g 215 (249)
T 2qi9_C 160 PMNSLDVAQQSALDKILSALSQ---Q-GLAIVMS-SHDLNHTLRHAHRA-WLLKGGKMLASG 215 (249)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHH---T-TCEEEEE-CSCHHHHHHHCSEE-EEEETTEEEEEE
T ss_pred CcccCCHHHHHHHHHHHHHHHh---C-CCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEeC
Confidence 9999999997666555433211 1 1112122 49999999999999 888999887554
No 28
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.64 E-value=1.5e-17 Score=155.67 Aligned_cols=169 Identities=15% Similarity=0.147 Sum_probs=111.6
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCCCCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKSAVP 87 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~~~~ 87 (350)
..++..+++|+++||+||||||||||+++|+|+ .+|.+|.|.++|.++..+ .. .|.+|....
T Consensus 71 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl-----------~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~l 139 (306)
T 3nh6_A 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF-----------YDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVL 139 (306)
T ss_dssp EEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS-----------SCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCC
T ss_pred eeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC-----------CCCCCcEEEECCEEcccCCHHHHhcceEEEecCCcc
Confidence 567889999999999999999999999999999 689999999999765432 11 233443322
Q ss_pred cceeeeeecccccccccCccccchHHHHHHHHHH-------------------------HHHHHhhc-CCCceeeecCCC
Q 018809 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG-------------------------IFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~-------------------------~l~vv~a~-~~~~vl~ld~~~ 141 (350)
...++.|+..+........ .....++.....+. -+.++||+ .+|+++++|
T Consensus 140 f~~Tv~eNi~~~~~~~~~~-~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLD--- 215 (306)
T 3nh6_A 140 FNDTIADNIRYGRVTAGND-EVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLD--- 215 (306)
T ss_dssp CSEEHHHHHHTTSTTCCHH-HHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE---
T ss_pred CcccHHHHHHhhcccCCHH-HHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEE---
Confidence 3456777665543211100 00011111111111 15567777 799999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
||++.+|...+..+...+..+.+ ..++.. .+|++..+.. ||+| .+|.+|+++..|+.
T Consensus 216 EPts~LD~~~~~~i~~~l~~l~~-----~~Tvi~-itH~l~~~~~-aD~i-~vl~~G~iv~~G~~ 272 (306)
T 3nh6_A 216 EATSALDTSNERAIQASLAKVCA-----NRTTIV-VAHRLSTVVN-ADQI-LVIKDGCIVERGRH 272 (306)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHT-----TSEEEE-ECCSHHHHHT-CSEE-EEEETTEEEEEECH
T ss_pred CCcccCCHHHHHHHHHHHHHHcC-----CCEEEE-EEcChHHHHc-CCEE-EEEECCEEEEECCH
Confidence 99999999987666554432211 111111 2499998876 9999 89999999877653
No 29
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.62 E-value=6.5e-18 Score=155.40 Aligned_cols=171 Identities=18% Similarity=0.146 Sum_probs=111.2
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH--Hh--hccCCC--CCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL--CQ--LFKPKS--AVP 87 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l--~~--~~~~~~--~~~ 87 (350)
-.+++.++++|++++|+||||||||||+++|+|. .+|.+|.|.++|.++... .. .|.++. ...
T Consensus 23 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~ 91 (266)
T 2yz2_A 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL-----------IEPTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQF 91 (266)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEECCHHHHGGGEEEECSSGGGGC
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCcEEEECCEECchHHhhhhEEEEeccchhhc
Confidence 4567899999999999999999999999999999 689999999999765321 11 233332 122
Q ss_pred cceeeeeecccccccc-cCcc---ccchHHHHHHHH--HH--------------HHHHHhhc-CCCceeeecCCCCCCch
Q 018809 88 AFLEIHDIAGLVRGAH-EGQG---LGNSFLSHIRAV--DG--------------IFHVLRAF-EDPDIIHVDDSVDPVRD 146 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~-~~~~---~~~~~l~~l~~~--d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~~ 146 (350)
..+++.|+..+..... .... ....+++.+... +. -+.+++++ .+|+++++| ||+++
T Consensus 92 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLD---EPts~ 168 (266)
T 2yz2_A 92 FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILD---EPLVG 168 (266)
T ss_dssp CCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE---STTTT
T ss_pred CCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEc---Ccccc
Confidence 2345666554431110 0000 111222222211 21 15678887 899999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 147 ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
+|......+...+..+.+ + ...+... +|+...+..+||++ .+|.+|+++..+
T Consensus 169 LD~~~~~~l~~~l~~l~~---~-g~tii~v-tHd~~~~~~~~d~v-~~l~~G~i~~~g 220 (266)
T 2yz2_A 169 LDREGKTDLLRIVEKWKT---L-GKTVILI-SHDIETVINHVDRV-VVLEKGKKVFDG 220 (266)
T ss_dssp CCHHHHHHHHHHHHHHHH---T-TCEEEEE-CSCCTTTGGGCSEE-EEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHH---c-CCEEEEE-eCCHHHHHHhCCEE-EEEECCEEEEeC
Confidence 999987666655433211 1 1112122 49998888899999 888999887554
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.62 E-value=2.9e-17 Score=149.42 Aligned_cols=169 Identities=20% Similarity=0.196 Sum_probs=107.7
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh--hccCCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKSAV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~--~~~~~~~~ 86 (350)
-..++.++++|++++|+||||||||||+++|+|+ .+|++|.|.++|.++.. +.. .|.++...
T Consensus 25 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~ 93 (247)
T 2ff7_A 25 LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF-----------YIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNV 93 (247)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCc
Confidence 3678899999999999999999999999999999 68999999999976532 111 23333321
Q ss_pred CcceeeeeecccccccccCccccchHHHHHHHHH-------------------------HHHHHHhhc-CCCceeeecCC
Q 018809 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD-------------------------GIFHVLRAF-EDPDIIHVDDS 140 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d-------------------------~~l~vv~a~-~~~~vl~ld~~ 140 (350)
....++.|+..+..... ........++.+...+ .-+.+++++ .+|+++++|
T Consensus 94 l~~~tv~enl~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLD-- 170 (247)
T 2ff7_A 94 LLNRSIIDNISLANPGM-SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFD-- 170 (247)
T ss_dssp CTTSBHHHHHTTTCTTC-CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEEC--
T ss_pred cccccHHHHHhccCCCC-CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe--
Confidence 11246666655432110 0000001111111000 115677777 899999999
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 141 ~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|......+...+..+ .+ ...+... +|+...+. .||++ .+|.+|+++..++
T Consensus 171 -EPts~LD~~~~~~i~~~l~~~----~~-g~tviiv-tH~~~~~~-~~d~v-~~l~~G~i~~~g~ 226 (247)
T 2ff7_A 171 -EATSALDYESEHVIMRNMHKI----CK-GRTVIII-AHRLSTVK-NADRI-IVMEKGKIVEQGK 226 (247)
T ss_dssp -CCCSCCCHHHHHHHHHHHHHH----HT-TSEEEEE-CSSGGGGT-TSSEE-EEEETTEEEEEEC
T ss_pred -CCcccCCHHHHHHHHHHHHHH----cC-CCEEEEE-eCCHHHHH-hCCEE-EEEECCEEEEECC
Confidence 999999999976666554332 11 1122122 49888765 48998 7889998876543
No 31
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.62 E-value=3e-18 Score=158.70 Aligned_cols=172 Identities=18% Similarity=0.193 Sum_probs=109.9
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchh--H-----HHh--hccCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE--W-----LCQ--LFKPKS 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~--~-----l~~--~~~~~~ 84 (350)
-++++.++++|+++||+||||||||||+++|+|. .+|++|.|.++|.++. . +.. .|.+|.
T Consensus 37 L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~ 105 (279)
T 2ihy_A 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY-----------EPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHS 105 (279)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTBCCC---CCHHHHHTTEEEECHH
T ss_pred EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcC
Confidence 3678899999999999999999999999999999 6899999999987653 1 111 122222
Q ss_pred C---CCcceeeeeecccccccc----c--CccccchHHHHHHHH---H--------------HHHHHHhhc-CCCceeee
Q 018809 85 A---VPAFLEIHDIAGLVRGAH----E--GQGLGNSFLSHIRAV---D--------------GIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 85 ~---~~~~l~~~D~~g~~~~~~----~--~~~~~~~~l~~l~~~---d--------------~~l~vv~a~-~~~~vl~l 137 (350)
. .+..+++.|+..+..... . ......++.+.++.. + .-+.+++|+ .+|+++++
T Consensus 106 ~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlL 185 (279)
T 2ihy_A 106 LLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLIL 185 (279)
T ss_dssp HHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 1 111235555544321100 0 000000111111111 1 115677887 89999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSM--KRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~--~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++++|....+.+...+..+.+ + ...+ ... +|+...+..+||++ .+|.+|+++..++
T Consensus 186 D---EPts~LD~~~~~~l~~~l~~l~~---~-g~tv~~iiv-tHd~~~~~~~~d~v-~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 186 D---EPAAGLDFIARESLLSILDSLSD---S-YPTLAMIYV-THFIEEITANFSKI-LLLKDGQSIQQGA 246 (279)
T ss_dssp E---STTTTCCHHHHHHHHHHHHHHHH---H-CTTCEEEEE-ESCGGGCCTTCCEE-EEEETTEEEEEEE
T ss_pred e---CCccccCHHHHHHHHHHHHHHHH---C-CCEEEEEEE-ecCHHHHHHhCCEE-EEEECCEEEEECC
Confidence 9 99999999998777666544322 1 2222 233 49998888999999 8889998876543
No 32
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.60 E-value=2.6e-17 Score=151.79 Aligned_cols=173 Identities=14% Similarity=0.142 Sum_probs=107.5
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~--~~~~~~~ 85 (350)
.-.+++.++++|++++|+||||||||||+++|+|+ .+|.+|.|.++|.++.. +.. .|.++..
T Consensus 34 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~ 102 (271)
T 2ixe_A 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL-----------YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEP 102 (271)
T ss_dssp CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSC
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCCEEEECCEEcccCCHHHHhccEEEEecCC
Confidence 34677899999999999999999999999999999 68999999999976532 111 2333332
Q ss_pred CCcceeeeeecccccccccC-ccc--------cchHHHHH--HH--------------HHHHHHHHhhc-CCCceeeecC
Q 018809 86 VPAFLEIHDIAGLVRGAHEG-QGL--------GNSFLSHI--RA--------------VDGIFHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~-~~~--------~~~~l~~l--~~--------------~d~~l~vv~a~-~~~~vl~ld~ 139 (350)
.....++.|+..+....... ... ...+++.+ .. -.--+.+++++ .+|+++++|
T Consensus 103 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLD- 181 (271)
T 2ixe_A 103 LLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILD- 181 (271)
T ss_dssp CCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEE-
T ss_pred ccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEE-
Confidence 11123666655443211100 000 00001100 00 00125677887 899999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|......+...+..+.+ +....+... +|+...+.. ||++ .+|.+|+++..++
T Consensus 182 --EPts~LD~~~~~~i~~~l~~~~~---~~g~tviiv-tHd~~~~~~-~d~v-~~l~~G~i~~~g~ 239 (271)
T 2ixe_A 182 --NATSALDAGNQLRVQRLLYESPE---WASRTVLLI-TQQLSLAER-AHHI-LFLKEGSVCEQGT 239 (271)
T ss_dssp --STTTTCCHHHHHHHHHHHHHCTT---TTTSEEEEE-CSCHHHHTT-CSEE-EEEETTEEEEEEC
T ss_pred --CCccCCCHHHHHHHHHHHHHHHh---hcCCEEEEE-eCCHHHHHh-CCEE-EEEECCEEEEECC
Confidence 99999999987555554332211 001111112 499987764 9998 8889998876544
No 33
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.59 E-value=3.2e-17 Score=148.83 Aligned_cols=171 Identities=16% Similarity=0.187 Sum_probs=104.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~ 85 (350)
.-.+++.++++|++++|+||||||||||+++|+|. .+|.+|.|.++|.++.... . .|.++..
T Consensus 17 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 85 (243)
T 1mv5_A 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF-----------YQPTAGEITIDGQPIDNISLENWRSQIGFVSQDS 85 (243)
T ss_dssp SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS-----------SCCSBSCEEETTEESTTTSCSCCTTTCCEECCSS
T ss_pred eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCC
Confidence 44678899999999999999999999999999999 6899999999987653211 1 1222322
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHH-------------------------HHHHHHHHhhc-CCCceeeecC
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA-------------------------VDGIFHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~-------------------------~d~~l~vv~a~-~~~~vl~ld~ 139 (350)
.....++.|+..+..............++.+.. -..-+.+++++ .+|+++++|
T Consensus 86 ~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLD- 164 (243)
T 1mv5_A 86 AIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLD- 164 (243)
T ss_dssp CCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE-
T ss_pred ccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEE-
Confidence 111235555554431000000000000000000 00114556666 699999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+. + ...+... +|+...+. .||++ .+|++|+++..++
T Consensus 165 --EPts~LD~~~~~~i~~~l~~~~----~-~~tvi~v-tH~~~~~~-~~d~v-~~l~~G~i~~~g~ 220 (243)
T 1mv5_A 165 --EATASLDSESESMVQKALDSLM----K-GRTTLVI-AHRLSTIV-DADKI-YFIEKGQITGSGK 220 (243)
T ss_dssp --CCSCSSCSSSCCHHHHHHHHHH----T-TSEEEEE-CCSHHHHH-HCSEE-EEEETTEECCCSC
T ss_pred --CCcccCCHHHHHHHHHHHHHhc----C-CCEEEEE-eCChHHHH-hCCEE-EEEECCEEEEeCC
Confidence 9999999988655554433221 1 1112122 49988775 59998 8889998876554
No 34
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.59 E-value=4.7e-17 Score=148.58 Aligned_cols=165 Identities=15% Similarity=0.241 Sum_probs=103.0
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCC-CCCcceee
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-AVPAFLEI 92 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~-~~~~~l~~ 92 (350)
-.+++.++++|++++|+||||||||||+++|+|. .+|.+|.|.+.. .+ + |.++. ..+..+++
T Consensus 21 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~~-~i---~--~v~q~~~~~~~~tv 83 (253)
T 2nq2_C 21 FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI-----------HRPIQGKIEVYQ-SI---G--FVPQFFSSPFAYSV 83 (253)
T ss_dssp EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS-----------SCCSEEEEEECS-CE---E--EECSCCCCSSCCBH
T ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEEec-cE---E--EEcCCCccCCCCCH
Confidence 4678889999999999999999999999999999 689999997421 11 1 11221 12223455
Q ss_pred eeecccccccccC-----cc-ccchHHHHHHHH---HH--------------HHHHHhhc-CCCceeeecCCCCCCchhH
Q 018809 93 HDIAGLVRGAHEG-----QG-LGNSFLSHIRAV---DG--------------IFHVLRAF-EDPDIIHVDDSVDPVRDLE 148 (350)
Q Consensus 93 ~D~~g~~~~~~~~-----~~-~~~~~l~~l~~~---d~--------------~l~vv~a~-~~~~vl~ld~~~eP~~~ld 148 (350)
.|+..+......+ .. ...++.+.+... +. -+.+++++ .+|+++++| ||++++|
T Consensus 84 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLD---EPts~LD 160 (253)
T 2nq2_C 84 LDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLD---EPTSALD 160 (253)
T ss_dssp HHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEES---SSSTTSC
T ss_pred HHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe---CCcccCC
Confidence 5554443211100 00 000111111111 11 15677777 899999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccC
Q 018809 149 VISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204 (350)
Q Consensus 149 ~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~ 204 (350)
....+.+...+..+.+. ....+... +|+...+..+||++ .+|.+|+ +..+
T Consensus 161 ~~~~~~l~~~l~~l~~~---~g~tvi~v-tHd~~~~~~~~d~v-~~l~~G~-~~~g 210 (253)
T 2nq2_C 161 LANQDIVLSLLIDLAQS---QNMTVVFT-THQPNQVVAIANKT-LLLNKQN-FKFG 210 (253)
T ss_dssp HHHHHHHHHHHHHHHHT---SCCEEEEE-ESCHHHHHHHCSEE-EEEETTE-EEEE
T ss_pred HHHHHHHHHHHHHHHHh---cCCEEEEE-ecCHHHHHHhCCEE-EEEeCCe-EecC
Confidence 99876665544332110 01111122 49999999999999 8889998 6544
No 35
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.58 E-value=2.5e-17 Score=151.11 Aligned_cols=166 Identities=15% Similarity=0.154 Sum_probs=105.1
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH----Hhh-ccCCCCCCc
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL----CQL-FKPKSAVPA 88 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l----~~~-~~~~~~~~~ 88 (350)
-.+++.+++ |++++|+||||||||||+++|+|. . |++|.|.++|.++... .-. |.++....
T Consensus 21 l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~-p~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l- 86 (263)
T 2pjz_A 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-----------L-PYSGNIFINGMEVRKIRNYIRYSTNLPEAYEI- 86 (263)
T ss_dssp EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTS-----------S-CCEEEEEETTEEGGGCSCCTTEEECCGGGSCT-
T ss_pred EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCC-----------C-CCCcEEEECCEECcchHHhhheEEEeCCCCcc-
Confidence 356789999 999999999999999999999999 7 9999999998655321 001 22222211
Q ss_pred ceeeeeeccccccccc-CccccchHHHHHHHH-H--------------HHHHHHhhc-CCCceeeecCCCCCCchhHHHH
Q 018809 89 FLEIHDIAGLVRGAHE-GQGLGNSFLSHIRAV-D--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVIS 151 (350)
Q Consensus 89 ~l~~~D~~g~~~~~~~-~~~~~~~~l~~l~~~-d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~ 151 (350)
.+++.|+..+...... .......+++.+... + .-+.+++++ .+|+++++| ||++++|...
T Consensus 87 ~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD---EPts~LD~~~ 163 (263)
T 2pjz_A 87 GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLD---EPFENVDAAR 163 (263)
T ss_dssp TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE---CTTTTCCHHH
T ss_pred CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCccccCHHH
Confidence 3444444433211000 000001111111111 1 115567777 799999999 9999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHH-HHHHHhhcCCccccCC
Q 018809 152 AELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQ-RVKAWLQDGKDVRLGD 205 (350)
Q Consensus 152 ~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~-~i~~~L~~g~~~~~~~ 205 (350)
.+.+...+..+. + .+... +|+...+..+|| ++ .+|.+|+++..++
T Consensus 164 ~~~l~~~L~~~~----~---tviiv-tHd~~~~~~~~d~~i-~~l~~G~i~~~g~ 209 (263)
T 2pjz_A 164 RHVISRYIKEYG----K---EGILV-THELDMLNLYKEYKA-YFLVGNRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHSC----S---EEEEE-ESCGGGGGGCTTSEE-EEEETTEEEEEEE
T ss_pred HHHHHHHHHHhc----C---cEEEE-EcCHHHHHHhcCceE-EEEECCEEEEecC
Confidence 755554433221 1 22223 499988889999 98 8889998876543
No 36
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.54 E-value=1.1e-15 Score=155.27 Aligned_cols=168 Identities=13% Similarity=0.156 Sum_probs=108.9
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~ 85 (350)
.-++++.++++|++++|+||||||||||+++|+|. .+|++|.|.++|.++.... . .+.+|..
T Consensus 358 ~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~ 426 (582)
T 3b5x_A 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF-----------YDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV 426 (582)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCC
Confidence 34678899999999999999999999999999999 6899999999997764321 1 2333332
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHH---H-------------------------HHHHHHhhc-CCCceee
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV---D-------------------------GIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~---d-------------------------~~l~vv~a~-~~~~vl~ 136 (350)
.....++.|+..+........ .+..+.++.+ + --+.++||+ .+|++++
T Consensus 427 ~l~~~tv~eni~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~ill 503 (582)
T 3b5x_A 427 HLFNDTIANNIAYAAEGEYTR---EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLI 503 (582)
T ss_pred ccccccHHHHHhccCCCCCCH---HHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 222235555554432000000 0111111111 0 115677887 8999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+| ||++.+|...+..+...+..+. + .+++.. .+|+...+. .||++ ..|++|+++..|+
T Consensus 504 lD---Epts~LD~~~~~~i~~~l~~~~----~-~~tvi~-itH~~~~~~-~~d~i-~~l~~G~i~~~g~ 561 (582)
T 3b5x_A 504 LD---EATSALDTESERAIQAALDELQ----K-NKTVLV-IAHRLSTIE-QADEI-LVVDEGEIIERGR 561 (582)
T ss_pred EE---CccccCCHHHHHHHHHHHHHHc----C-CCEEEE-EecCHHHHH-hCCEE-EEEECCEEEEECC
Confidence 99 9999999998766555433221 1 111211 249998775 69999 8899999876654
No 37
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.54 E-value=4.2e-15 Score=132.20 Aligned_cols=160 Identities=16% Similarity=0.160 Sum_probs=97.5
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHh--hccCCC-CCCcc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ--LFKPKS-AVPAF 89 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~--~~~~~~-~~~~~ 89 (350)
.-.+++..+++|++++|+||||||||||+++|+|. .+|++|.|.++|.++..... .|.++. ..+..
T Consensus 24 il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~~~~~ 92 (214)
T 1sgw_A 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY-----------LKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRK 92 (214)
T ss_dssp EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEETTEEGGGGGGGEEEECSSCCCCTT
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCeEEEECCEEhhhhcCcEEEEeCCCcCCCC
Confidence 34677889999999999999999999999999999 68999999999976531111 122222 22233
Q ss_pred eeeeeeccccccccc-Ccc--ccchHHHHHH-------------HHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHH
Q 018809 90 LEIHDIAGLVRGAHE-GQG--LGNSFLSHIR-------------AVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (350)
Q Consensus 90 l~~~D~~g~~~~~~~-~~~--~~~~~l~~l~-------------~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~ 152 (350)
+++.|+..+...... ... .....++.+. .-..-+.+++++ .+|+++++| ||++++|....
T Consensus 93 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLD---EPts~LD~~~~ 169 (214)
T 1sgw_A 93 ISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLD---DPVVAIDEDSK 169 (214)
T ss_dssp SBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE---STTTTSCTTTH
T ss_pred CCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEE---CCCcCCCHHHH
Confidence 455555433211000 000 0011111110 011125677887 899999999 99999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Q 018809 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRV 191 (350)
Q Consensus 153 el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i 191 (350)
+.+...+..+.+ -...+... +|+...+..+++++
T Consensus 170 ~~l~~~l~~~~~----~g~tiiiv-tHd~~~~~~~~d~v 203 (214)
T 1sgw_A 170 HKVLKSILEILK----EKGIVIIS-SREELSYCDVNENL 203 (214)
T ss_dssp HHHHHHHHHHHH----HHSEEEEE-ESSCCTTSSEEEEG
T ss_pred HHHHHHHHHHHh----CCCEEEEE-eCCHHHHHHhCCEE
Confidence 666655443321 11122122 48877766666665
No 38
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.54 E-value=3.1e-16 Score=143.73 Aligned_cols=165 Identities=17% Similarity=0.191 Sum_probs=104.1
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCCCC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKSAV 86 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~~~ 86 (350)
-.+++.++++|++++|+||||||||||+++|+|+ .+| +|.|.++|.++... .. .|.+|...
T Consensus 36 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~ 103 (260)
T 2ghi_A 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF-----------YDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTI 103 (260)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS-----------SCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCC
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc-----------CCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCc
Confidence 4567899999999999999999999999999999 456 89999999765321 11 23333322
Q ss_pred CcceeeeeecccccccccCccccchHHHHHHHH----------------------------HHHHHHHhhc-CCCceeee
Q 018809 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIHV 137 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~----------------------------d~~l~vv~a~-~~~~vl~l 137 (350)
....++.|+..+..... . ..+..+.++.+ ..-+.+++++ .+|+++++
T Consensus 104 l~~~tv~enl~~~~~~~-~---~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllL 179 (260)
T 2ghi_A 104 LFNETIKYNILYGKLDA-T---DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIF 179 (260)
T ss_dssp CCSEEHHHHHHTTCTTC-C---HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred ccccCHHHHHhccCCCC-C---HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 12346666554421100 0 00000111000 0114566776 79999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 138 DDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 138 d~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
| ||++.+|......+...+..+. + ...+... +|+...+. .||++ .+|.+|+++..++
T Consensus 180 D---EPts~LD~~~~~~i~~~l~~l~----~-~~tviiv-tH~~~~~~-~~d~i-~~l~~G~i~~~g~ 236 (260)
T 2ghi_A 180 D---EATSSLDSKTEYLFQKAVEDLR----K-NRTLIII-AHRLSTIS-SAESI-ILLNKGKIVEKGT 236 (260)
T ss_dssp E---CCCCTTCHHHHHHHHHHHHHHT----T-TSEEEEE-CSSGGGST-TCSEE-EEEETTEEEEEEC
T ss_pred E---CccccCCHHHHHHHHHHHHHhc----C-CCEEEEE-cCCHHHHH-hCCEE-EEEECCEEEEECC
Confidence 9 9999999998766655543321 1 1112122 49887765 48988 7889998876543
No 39
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.52 E-value=7.5e-16 Score=144.51 Aligned_cols=197 Identities=21% Similarity=0.216 Sum_probs=125.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeC-CcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIP-DERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~-~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
+...++|+|.||||||||+|.|+|....+ +++|+||+....|....+ + .++.++||||+..
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~-----------------~~i~lvDTPG~~~ 71 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE-----------------AQIIFLDTPGIYE 71 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT-----------------EEEEEEECCCCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC-----------------CeEEEEECcCCCc
Confidence 34688999999999999999999998875 899999999998888776 4 3589999999976
Q ss_pred cc--cc-CccccchHHHHHHHHHHHHHHHhhcCCCc-----e--eeecCCCCCC----chhHHH-HHHHHHHHHHHHHHH
Q 018809 101 GA--HE-GQGLGNSFLSHIRAVDGIFHVLRAFEDPD-----I--IHVDDSVDPV----RDLEVI-SAELRLKDIEFMERR 165 (350)
Q Consensus 101 ~~--~~-~~~~~~~~l~~l~~~d~~l~vv~a~~~~~-----v--l~ld~~~eP~----~~ld~~-~~el~~~~l~~l~~~ 165 (350)
.. .. +..+.......++.+|++++|+|+..... + -.+....-|. +.+|.. +.+.....+..+.+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~ 151 (308)
T 3iev_A 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKK 151 (308)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHh
Confidence 44 11 12233344566778888888877752211 0 0011011121 234443 222222222222221
Q ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcccc-CCCChhH-----HHHHHHh-hhhhcCCcchhcccchhhhh
Q 018809 166 IEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IEILNTF-QLLTAKPVVYLVNMNEKDYQ 237 (350)
Q Consensus 166 ~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~-~~~t~~~-----~e~i~~~-~~~~~kp~~~~~n~~~~~~~ 237 (350)
+......+..| +....++.++.+.+...++++...++ +.+++.+ .|++|+. +....+++||.+.+..+.+.
T Consensus 152 ~~~~~~i~~vS-A~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~ 229 (308)
T 3iev_A 152 HPELTEIVPIS-ALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIK 229 (308)
T ss_dssp CTTCCCEEECB-TTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEE
T ss_pred ccCCCeEEEEe-CCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEE
Confidence 11001111223 36677889999999999999887776 4555543 2667876 67788999999988776654
No 40
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.52 E-value=9.2e-17 Score=146.39 Aligned_cols=174 Identities=14% Similarity=0.070 Sum_probs=104.0
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----H-Hh--hccCCC-
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----L-CQ--LFKPKS- 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l-~~--~~~~~~- 84 (350)
-.+++.++++|++++|+||||||||||+++|+|+.. .+|++|.|.++|.++.. . .. .|.++.
T Consensus 19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---------~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~ 89 (250)
T 2d2e_A 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE---------YTVERGEILLDGENILELSPDERARKGLFLAFQYP 89 (250)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTT---------CEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCC
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCceEEEECCEECCCCCHHHHHhCcEEEeccCC
Confidence 356788999999999999999999999999999710 26899999999976532 1 11 122332
Q ss_pred CCCcceeeeeecccccccccC--------ccccchHHHHHHH----------------HHHHHHHHhhc-CCCceeeecC
Q 018809 85 AVPAFLEIHDIAGLVRGAHEG--------QGLGNSFLSHIRA----------------VDGIFHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~--------~~~~~~~l~~l~~----------------~d~~l~vv~a~-~~~~vl~ld~ 139 (350)
..+..+++.|+..+......+ .......++.+.. -..-+.+++++ .+|+++++|
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLD- 168 (250)
T 2d2e_A 90 VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLD- 168 (250)
T ss_dssp C-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEE-
T ss_pred ccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEe-
Confidence 222234444443221100000 0000001111100 00114566666 799999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHH-HHHHHHHhhcCCccccCC
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHEL-CQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l-~~~i~~~L~~g~~~~~~~ 205 (350)
||++++|....+.+...+..+.+ -...+... +|+...+..+ ||++ .+|.+|+++..++
T Consensus 169 --EPts~LD~~~~~~l~~~l~~l~~----~g~tvi~v-tHd~~~~~~~~~d~v-~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 169 --ETDSGLDIDALKVVARGVNAMRG----PNFGALVI-THYQRILNYIQPDKV-HVMMDGRVVATGG 227 (250)
T ss_dssp --CGGGTTCHHHHHHHHHHHHHHCS----TTCEEEEE-CSSSGGGGTSCCSEE-EEEETTEEEEEES
T ss_pred --CCCcCCCHHHHHHHHHHHHHHHh----cCCEEEEE-ecCHHHHHHhcCCEE-EEEECCEEEEEeC
Confidence 99999999987655554332211 01111122 4998887777 5988 8889998876544
No 41
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.51 E-value=1.9e-15 Score=154.02 Aligned_cols=173 Identities=14% Similarity=0.245 Sum_probs=110.6
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKS 84 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~ 84 (350)
|.-++++.++++|+++||+||||||||||+++|+|. .+|++|.|.++|.++..+ .. .+.+|.
T Consensus 369 ~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~ 437 (598)
T 3qf4_B 369 PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF-----------YDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQD 437 (598)
T ss_dssp CSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHHEEEECTT
T ss_pred ccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------cCCCCeEEEECCEEhhhCCHHHHHhceEEEeCC
Confidence 344678899999999999999999999999999999 689999999999876432 11 233333
Q ss_pred CCCcceeeeeecccccccccCcccc--------chHHHHH----------------HHHHHHHHHHhhc-CCCceeeecC
Q 018809 85 AVPAFLEIHDIAGLVRGAHEGQGLG--------NSFLSHI----------------RAVDGIFHVLRAF-EDPDIIHVDD 139 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~~~~~--------~~~l~~l----------------~~~d~~l~vv~a~-~~~~vl~ld~ 139 (350)
......++.|+..+........... ..+.+.+ ..-.--+.++||+ .+|+++++|
T Consensus 438 ~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlD- 516 (598)
T 3qf4_B 438 TILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILD- 516 (598)
T ss_dssp CCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEEC-
T ss_pred CccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE-
Confidence 2222345566554432111000000 0000000 0000125677777 899999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 140 ~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
||++.+|...+..+...+..+.+ .+++ .-.+|+...+.. ||++ .+|++|+++..|+.
T Consensus 517 --Epts~LD~~~~~~i~~~l~~~~~-----~~t~-i~itH~l~~~~~-~d~i-~~l~~G~i~~~g~~ 573 (598)
T 3qf4_B 517 --EATSNVDTKTEKSIQAAMWKLME-----GKTS-IIIAHRLNTIKN-ADLI-IVLRDGEIVEMGKH 573 (598)
T ss_dssp --CCCTTCCHHHHHHHHHHHHHHHT-----TSEE-EEESCCTTHHHH-CSEE-EEECSSSEEECSCH
T ss_pred --CCccCCCHHHHHHHHHHHHHHcC-----CCEE-EEEecCHHHHHc-CCEE-EEEECCEEEEECCH
Confidence 99999999987665544332210 1111 112499988765 9999 89999999877653
No 42
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.50 E-value=1.6e-15 Score=154.55 Aligned_cols=170 Identities=15% Similarity=0.184 Sum_probs=107.6
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh--hccCCCCCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKSAVP 87 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~--~~~~~~~~~ 87 (350)
++++.++++|+++||+||||||||||+++|+|. .+|++|.|.++|.++.. +.. .+.+|....
T Consensus 361 ~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~-----------~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l 429 (595)
T 2yl4_A 361 QDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRL-----------YDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPIL 429 (595)
T ss_dssp EEEEEEECTTCEEEEECCTTSSSTHHHHHHTTS-----------SCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCC
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcc
Confidence 567889999999999999999999999999999 68999999999976532 111 233333211
Q ss_pred cceeeeeecccccccccCccccchHHHHHHHHH----------------------------HHHHHHhhc-CCCceeeec
Q 018809 88 AFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD----------------------------GIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 88 ~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d----------------------------~~l~vv~a~-~~~~vl~ld 138 (350)
...++.|+..+......... ..+..+.++.+. .-+.++||+ .+|+++++|
T Consensus 430 ~~~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlD 508 (595)
T 2yl4_A 430 FSCSIAENIAYGADDPSSVT-AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLD 508 (595)
T ss_dssp CSSBHHHHHHTTSSSTTTSC-HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCHHHHHhhcCCCccccC-HHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 12355555544321100000 001111111110 014566776 799999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWK 207 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~t 207 (350)
||++.+|...+..+...+..+.+ .+++.. .+|+...+. .||++ ..|++|+++..|+..
T Consensus 509 ---Epts~LD~~~~~~i~~~l~~~~~-----~~tvi~-itH~~~~~~-~~d~i-~~l~~G~i~~~g~~~ 566 (595)
T 2yl4_A 509 ---EATSALDAENEYLVQEALDRLMD-----GRTVLV-IAHRLSTIK-NANMV-AVLDQGKITEYGKHE 566 (595)
T ss_dssp ---CCCSSCCHHHHHHHHHHHHHHHT-----TSEEEE-ECCCHHHHH-HSSEE-EEEETTEEEEEECSC
T ss_pred ---CcccCCCHHHHHHHHHHHHHHhc-----CCEEEE-EecCHHHHH-cCCEE-EEEECCEEEEECCHH
Confidence 99999999987665554432211 111111 249998775 59998 888999987665543
No 43
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.49 E-value=1.7e-15 Score=136.20 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=98.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceee
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~ 92 (350)
.-.+++.++++|++++|+||||||||||+++|+|. .+|.+|.|.++|. +. |.++.......++
T Consensus 23 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~-i~-----~v~q~~~~~~~tv 85 (229)
T 2pze_A 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSGR-IS-----FCSQFSWIMPGTI 85 (229)
T ss_dssp SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSEEEEEECSC-EE-----EECSSCCCCSBCH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCccEEEECCE-EE-----EEecCCcccCCCH
Confidence 44678899999999999999999999999999999 6899999999873 21 1122111111244
Q ss_pred eeeccccccccc------------------------------CccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCC
Q 018809 93 HDIAGLVRGAHE------------------------------GQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 93 ~D~~g~~~~~~~------------------------------~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
.|+..+...... ...+..-..+ -+.+++++ .+|+++++|
T Consensus 86 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkq-------rv~lAral~~~p~lllLD--- 155 (229)
T 2pze_A 86 KENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRA-------RISLARAVYKDADLYLLD--- 155 (229)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHH-------HHHHHHHHHSCCSEEEEE---
T ss_pred HHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHH-------HHHHHHHHhcCCCEEEEE---
Confidence 444332210000 0000000011 24566776 799999999
Q ss_pred CCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDI-EFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l-~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|......+...+ ..+ .+ ...+... +|+...+. .||++ .+|++|+++..++
T Consensus 156 EPts~LD~~~~~~i~~~l~~~~----~~-~~tvi~v-tH~~~~~~-~~d~v-~~l~~G~i~~~g~ 212 (229)
T 2pze_A 156 SPFGYLDVLTEKEIFESCVCKL----MA-NKTRILV-TSKMEHLK-KADKI-LILHEGSSYFYGT 212 (229)
T ss_dssp STTTTSCHHHHHHHHHHCCCCC----TT-TSEEEEE-CCCHHHHH-HCSEE-EEEETTEEEEEEC
T ss_pred CcccCCCHHHHHHHHHHHHHHh----hC-CCEEEEE-cCChHHHH-hCCEE-EEEECCEEEEECC
Confidence 999999998865444321 111 00 1111112 49988765 58988 7889998876543
No 44
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.48 E-value=2.2e-15 Score=153.19 Aligned_cols=168 Identities=17% Similarity=0.248 Sum_probs=110.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~~ 85 (350)
.-++++.++++|++++|+||||||||||+++|+|. .+|++|.|.++|.++..+ .. .|.+|..
T Consensus 358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~-----------~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 426 (587)
T 3qf4_A 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL-----------IDPERGRVEVDELDVRTVKLKDLRGHISAVPQET 426 (587)
T ss_dssp SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS-----------SCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSC
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------ccCCCcEEEECCEEcccCCHHHHHhheEEECCCC
Confidence 34678889999999999999999999999999999 689999999999876532 11 2344433
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHH---H-------------------------HHHHHHhhc-CCCceee
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV---D-------------------------GIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~---d-------------------------~~l~vv~a~-~~~~vl~ 136 (350)
.....++.|+..+....... .+..+.++.+ + .-+.++||+ .+|++++
T Consensus 427 ~lf~~tv~eni~~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~ill 502 (587)
T 3qf4_A 427 VLFSGTIKENLKWGREDATD----DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLI 502 (587)
T ss_dssp CCCSEEHHHHHTTTCSSCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred cCcCccHHHHHhccCCCCCH----HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEE
Confidence 22234666665543221100 0011111110 0 115577777 7999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
+| ||++.+|...+..+...+..+.+ .+++ .-.+|++..+. .||++ .+|++|+++..|+.
T Consensus 503 lD---Epts~LD~~~~~~i~~~l~~~~~-----~~tv-i~itH~l~~~~-~~d~i-~vl~~G~i~~~g~~ 561 (587)
T 3qf4_A 503 LD---DCTSSVDPITEKRILDGLKRYTK-----GCTT-FIITQKIPTAL-LADKI-LVLHEGKVAGFGTH 561 (587)
T ss_dssp EE---SCCTTSCHHHHHHHHHHHHHHST-----TCEE-EEEESCHHHHT-TSSEE-EEEETTEEEEEECH
T ss_pred EE---CCcccCCHHHHHHHHHHHHHhCC-----CCEE-EEEecChHHHH-hCCEE-EEEECCEEEEECCH
Confidence 99 99999999887655544322110 1111 11249998775 79999 88999998877653
No 45
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.47 E-value=1.7e-15 Score=154.02 Aligned_cols=168 Identities=16% Similarity=0.201 Sum_probs=106.8
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH-----HHh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW-----LCQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~-----l~~--~~~~~~~ 85 (350)
.-.+++.++++|+++||+||||||||||+++|+|. .+|++|.|.++|.++.. +.. .+.+|..
T Consensus 358 ~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~ 426 (582)
T 3b60_A 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF-----------YDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426 (582)
T ss_dssp SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT-----------TCCSEEEEEETTEETTTBCHHHHHHTEEEECSSC
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc-----------cCCCCCeEEECCEEccccCHHHHHhhCeEEccCC
Confidence 34568889999999999999999999999999999 68999999999976532 111 2333332
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHH---H-------------------------HHHHHHhhc-CCCceee
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV---D-------------------------GIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~---d-------------------------~~l~vv~a~-~~~~vl~ 136 (350)
.....++.|+..+........ .+..+.++.+ + .-+.++||+ .+|++++
T Consensus 427 ~l~~~tv~eni~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~ill 503 (582)
T 3b60_A 427 HLFNDTVANNIAYARTEEYSR---EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_dssp CCCSSBHHHHHHTTTTSCCCH---HHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cCCCCCHHHHHhccCCCCCCH---HHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 222235666554432000000 0011111110 0 014566776 7999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+| ||++.+|...+..+...+..+. + .+++.. .+|+...+. .||++ .+|++|+++..|+
T Consensus 504 lD---Epts~LD~~~~~~i~~~l~~~~----~-~~tvi~-itH~~~~~~-~~d~i-~~l~~G~i~~~g~ 561 (582)
T 3b60_A 504 LD---EATSALDTESERAIQAALDELQ----K-NRTSLV-IAHRLSTIE-QADEI-VVVEDGIIVERGT 561 (582)
T ss_dssp EE---TTTSSCCHHHHHHHHHHHHHHH----T-TSEEEE-ECSCGGGTT-TCSEE-EEEETTEEEEEEC
T ss_pred EE---CccccCCHHHHHHHHHHHHHHh----C-CCEEEE-EeccHHHHH-hCCEE-EEEECCEEEEecC
Confidence 99 9999999998766554433221 1 111111 249887765 68998 8889998876654
No 46
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.47 E-value=1.3e-14 Score=141.13 Aligned_cols=99 Identities=34% Similarity=0.611 Sum_probs=76.5
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceee
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~ 92 (350)
....++.+++.+..++|+|+||||||||+|+|+|....++++||||+.|+.|.+.+++. ..+.+
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~----------------~~~~l 209 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE----------------ERFTL 209 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS----------------CEEEE
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc----------------ceEEE
Confidence 44678888999999999999999999999999999877899999999999999987641 24789
Q ss_pred eeecccccccccCccccchHHHHHHHHHHHHHHHh
Q 018809 93 HDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLR 127 (350)
Q Consensus 93 ~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~ 127 (350)
+|+||+....+....++..++..+..++.++++++
T Consensus 210 ~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvD 244 (416)
T 1udx_A 210 ADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLD 244 (416)
T ss_dssp EECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEE
T ss_pred EeccccccchhhhhhhhHHHHHHHHHHHhhhEEeC
Confidence 99999876655444455555554444444444443
No 47
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.47 E-value=8.6e-16 Score=141.27 Aligned_cols=175 Identities=16% Similarity=0.114 Sum_probs=102.3
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh---hccCCC-
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ---LFKPKS- 84 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~---~~~~~~- 84 (350)
-++++.++++|++++|+||||||||||+++|+|+.. .+|++|.|.++|.++... .. .|.++.
T Consensus 36 l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~---------~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~ 106 (267)
T 2zu0_C 36 LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED---------YEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYP 106 (267)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTT---------CEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSC
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---------CCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCc
Confidence 366788999999999999999999999999999820 258899999999765321 11 122332
Q ss_pred CCCcceeeeeeccccc-------cc---ccC--ccccchHHHHHHH----------------HHHHHHHHhhc-CCCcee
Q 018809 85 AVPAFLEIHDIAGLVR-------GA---HEG--QGLGNSFLSHIRA----------------VDGIFHVLRAF-EDPDII 135 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~-------~~---~~~--~~~~~~~l~~l~~----------------~d~~l~vv~a~-~~~~vl 135 (350)
.....+++.++..+.. .. ... ......+++.+.. -.--+.+++|+ .+|+++
T Consensus 107 ~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lL 186 (267)
T 2zu0_C 107 VEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELC 186 (267)
T ss_dssp CCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEE
T ss_pred cccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEE
Confidence 1122223322221110 00 000 0000000000000 00114455666 699999
Q ss_pred eecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHH-HHHHHHHhhcCCccccCCC
Q 018809 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHEL-CQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 136 ~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l-~~~i~~~L~~g~~~~~~~~ 206 (350)
++| ||++++|....+.+...+..+.+ -...+... +|+...+..+ ||++ .+|.+|+++..++.
T Consensus 187 lLD---EPts~LD~~~~~~l~~~l~~l~~----~g~tviiv-tHd~~~~~~~~~d~v-~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 187 ILD---ESDSGLDIDALKVVADGVNSLRD----GKRSFIIV-THYQRILDYIKPDYV-HVLYQGRIVKSGDF 249 (267)
T ss_dssp EEE---STTTTCCHHHHHHHHHHHHTTCC----SSCEEEEE-CSSGGGGGTSCCSEE-EEEETTEEEEEECT
T ss_pred EEe---CCCCCCCHHHHHHHHHHHHHHHh----cCCEEEEE-eeCHHHHHhhcCCEE-EEEECCEEEEEcCH
Confidence 999 99999999987555544322210 01111112 4998877776 8998 88899998866554
No 48
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.47 E-value=4.2e-15 Score=144.35 Aligned_cols=171 Identities=15% Similarity=0.056 Sum_probs=105.1
Q ss_pred ccccccccCCc--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchh
Q 018809 15 RPILGRFSSHL--------------------KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74 (350)
Q Consensus 15 ~~~~~~i~~g~--------------------~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~ 74 (350)
..++..++.|+ ++||+|+||||||||+|+|+|. .+|..|.|.+++.+..
T Consensus 40 ~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl-----------~~p~~GsI~~~g~~~t 108 (413)
T 1tq4_A 40 NLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGI-----------GNEEEGAAKTGVVEVT 108 (413)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTC-----------CTTSTTSCCCCC----
T ss_pred hhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCC-----------CCccCceEEECCeecc
Confidence 46777888999 9999999999999999999999 5788888888775442
Q ss_pred HHHhhccCCCCCCcceeeeeecccccccccCc------cccc-----------hHHHHHHHHHHHHH----HHhhcCCCc
Q 018809 75 WLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQ------GLGN-----------SFLSHIRAVDGIFH----VLRAFEDPD 133 (350)
Q Consensus 75 ~l~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~------~~~~-----------~~l~~l~~~d~~l~----vv~a~~~~~ 133 (350)
....+++ .....+++++|++++......-. ++.. -..+++..+.++.+ ++-+..+|+
T Consensus 109 ~~~~v~q--~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpd 186 (413)
T 1tq4_A 109 MERHPYK--HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVRTKVD 186 (413)
T ss_dssp CCCEEEE--CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred eeEEecc--ccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEEEEecCc
Confidence 2111222 22344789999999864211000 0000 01122333333322 111123788
Q ss_pred eeeecCCCCCCchhHHHHHHHHHHHHHHHHH-HHHHH----HHHHhhcccccHHH--HHHHHHHHHHHhhcCCccc
Q 018809 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMER-RIEDV----EKSMKRSNDKQLKI--EHELCQRVKAWLQDGKDVR 202 (350)
Q Consensus 134 vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~-~~~~~----~~~~~~~~~h~~~~--~~~l~~~i~~~L~~g~~~~ 202 (350)
++++| ||++++|....+.++..+..+.+ .+.+. ...+..| +|...+ ++++|+++...|++|+..+
T Consensus 187 lllLD---EPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliS-sh~l~~~~~e~L~d~I~~~Lpeg~~~~ 258 (413)
T 1tq4_A 187 SDITN---EADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLS-NKNVCHYDFPVLMDKLISDLPIYKRHN 258 (413)
T ss_dssp HHHHH---HHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECC-TTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred ccccC---cccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEe-cCcCCccCHHHHHHHHHHhCccchhhH
Confidence 88999 99999999887666555444321 11111 0112223 377776 9999999999999998765
No 49
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.46 E-value=1.5e-15 Score=154.26 Aligned_cols=168 Identities=14% Similarity=0.240 Sum_probs=108.1
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~~ 85 (350)
.=++++.++++|+++||+||||||||||+++|+|. .+|++|.|.++|.++..+ .. .|.+|..
T Consensus 356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~-----------~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 424 (578)
T 4a82_A 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF-----------YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDN 424 (578)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSC
T ss_pred ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC-----------CCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCC
Confidence 34677889999999999999999999999999999 689999999999876432 11 2333332
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHH---H-------------------------HHHHHHhhc-CCCceee
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV---D-------------------------GIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~---d-------------------------~~l~vv~a~-~~~~vl~ 136 (350)
.....++.|+..+....... .+..+.++.+ + --+.++||+ .+|++++
T Consensus 425 ~l~~~tv~eni~~~~~~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ill 500 (578)
T 4a82_A 425 ILFSDTVKENILLGRPTATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILI 500 (578)
T ss_dssp CCCSSBHHHHHGGGCSSCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred ccCcccHHHHHhcCCCCCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 22223566655443211100 0111111110 0 014566776 7999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
+| ||++.+|...+..+...+..+.+ .+++.. .+|++..+.. ||++ .+|++|+++..|+.
T Consensus 501 lD---Epts~LD~~~~~~i~~~l~~~~~-----~~t~i~-itH~l~~~~~-~d~i-~~l~~G~i~~~g~~ 559 (578)
T 4a82_A 501 LD---EATSALDLESESIIQEALDVLSK-----DRTTLI-VAHRLSTITH-ADKI-VVIENGHIVETGTH 559 (578)
T ss_dssp EE---STTTTCCHHHHHHHHHHHHHHTT-----TSEEEE-ECSSGGGTTT-CSEE-EEEETTEEEEEECH
T ss_pred EE---CccccCCHHHHHHHHHHHHHHcC-----CCEEEE-EecCHHHHHc-CCEE-EEEECCEEEEECCH
Confidence 99 99999999886555444322211 111111 2499887754 9999 88999998876653
No 50
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.45 E-value=2e-15 Score=145.69 Aligned_cols=170 Identities=12% Similarity=0.170 Sum_probs=104.3
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKS 84 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~ 84 (350)
+.-+.++..+++|++++|+||||||||||+++|+|+ .+ .+|.|.++|+++..+ .. .+.+|.
T Consensus 35 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl-----------~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~ 102 (390)
T 3gd7_A 35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-----------LN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQK 102 (390)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC-----------SE-EEEEEEESSCBTTSSCHHHHHHTEEEESCC
T ss_pred EEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCC-----------CC-CCeEEEECCEECCcCChHHHhCCEEEEcCC
Confidence 344778899999999999999999999999999999 34 789999999865321 11 123333
Q ss_pred CCCcceeeeeecccccccccCccccchHHHHHHH-------------------------HHHHHHHHhhc-CCCceeeec
Q 018809 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRA-------------------------VDGIFHVLRAF-EDPDIIHVD 138 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~-------------------------~d~~l~vv~a~-~~~~vl~ld 138 (350)
.....+++.|+..+...... ......++.+.. -.--+.++||+ .+|+++++|
T Consensus 103 ~~lf~~tv~enl~~~~~~~~--~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLD 180 (390)
T 3gd7_A 103 VFIFSGTFRKNLDPNAAHSD--QEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180 (390)
T ss_dssp CCCCSEEHHHHHCTTCCSCH--HHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccCccCHHHHhhhccccCH--HHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 22223566665543211100 000000100000 00114566776 799999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 139 DSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 139 ~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
||++.+|......+...+..+ .. ..++ .-.+|+.+.+ ..||+| .+|++|+++..++.
T Consensus 181 ---EPts~LD~~~~~~l~~~l~~~----~~-~~tv-i~vtHd~e~~-~~aDri-~vl~~G~i~~~g~~ 237 (390)
T 3gd7_A 181 ---EPSAHLDPVTYQIIRRTLKQA----FA-DCTV-ILCEARIEAM-LECDQF-LVIEENKVRQYDSI 237 (390)
T ss_dssp ---SHHHHSCHHHHHHHHHHHHTT----TT-TSCE-EEECSSSGGG-TTCSEE-EEEETTEEEEESSH
T ss_pred ---CCccCCCHHHHHHHHHHHHHH----hC-CCEE-EEEEcCHHHH-HhCCEE-EEEECCEEEEECCH
Confidence 999999998765554443211 00 1111 1124887544 569999 89999998876543
No 51
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.44 E-value=2.7e-15 Score=139.42 Aligned_cols=163 Identities=15% Similarity=0.184 Sum_probs=97.7
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceee
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~ 92 (350)
.-.+++..+++|++++|+||||||||||+++|+|+ .+|.+|.|.++|. +. |.++.......++
T Consensus 53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~g~-i~-----~v~Q~~~l~~~tv 115 (290)
T 2bbs_A 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE-----------LEPSEGKIKHSGR-IS-----FCSQNSWIMPGTI 115 (290)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS-----------SCEEEEEEECCSC-EE-----EECSSCCCCSSBH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCcEEEECCE-EE-----EEeCCCccCcccH
Confidence 34677889999999999999999999999999999 6899999999873 21 1222111111244
Q ss_pred eeecccccccccCccccchHH------HHHH-------------------HHHHHHHHHhhc-CCCceeeecCCCCCCch
Q 018809 93 HDIAGLVRGAHEGQGLGNSFL------SHIR-------------------AVDGIFHVLRAF-EDPDIIHVDDSVDPVRD 146 (350)
Q Consensus 93 ~D~~g~~~~~~~~~~~~~~~l------~~l~-------------------~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ 146 (350)
.|+.. ..... . ......+ ..+. .-..-+.+++++ .+|+++++| ||+++
T Consensus 116 ~enl~-~~~~~-~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLD---EPts~ 189 (290)
T 2bbs_A 116 KENII-GVSYD-E-YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD---SPFGY 189 (290)
T ss_dssp HHHHH-TTCCC-H-HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEE---STTTT
T ss_pred HHHhh-Ccccc-h-HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEE---CCccc
Confidence 44332 10000 0 0000000 0000 000114567777 799999999 99999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 147 ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+|......+...+ .+.+.+ ...+... +|+...+. .||++ .+|.+|+++..++
T Consensus 190 LD~~~~~~i~~~l---l~~~~~-~~tviiv-tHd~~~~~-~~d~i-~~l~~G~i~~~g~ 241 (290)
T 2bbs_A 190 LDVLTEKEIFESC---VCKLMA-NKTRILV-TSKMEHLK-KADKI-LILHEGSSYFYGT 241 (290)
T ss_dssp CCHHHHHHHHHHC---CCCCTT-TSEEEEE-CCCHHHHH-HSSEE-EEEETTEEEEEEC
T ss_pred CCHHHHHHHHHHH---HHHhhC-CCEEEEE-ecCHHHHH-cCCEE-EEEECCeEEEeCC
Confidence 9998865444321 000100 1111112 49988764 59998 7889998876554
No 52
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.43 E-value=1.9e-13 Score=123.46 Aligned_cols=161 Identities=16% Similarity=0.172 Sum_probs=99.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceee
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI 92 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~ 92 (350)
.-.+++..+++|++++|+||||||||||+++|+|. .+|.+|.|.++|. +. |.++.......++
T Consensus 20 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~-i~-----~v~Q~~~~~~~tv 82 (237)
T 2cbz_A 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE-----------MDKVEGHVAIKGS-VA-----YVPQQAWIQNDSL 82 (237)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC-----------SEEEEEEEEECSC-EE-----EECSSCCCCSEEH
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCCceEEECCE-EE-----EEcCCCcCCCcCH
Confidence 44678899999999999999999999999999999 6899999999873 21 2222211223455
Q ss_pred eeecccccccccC------------------------------ccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCC
Q 018809 93 HDIAGLVRGAHEG------------------------------QGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSV 141 (350)
Q Consensus 93 ~D~~g~~~~~~~~------------------------------~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~ 141 (350)
.|+..+....... ..+..-..++ +.+++++ .+|+++++|
T Consensus 83 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqR-------v~lAraL~~~p~lllLD--- 152 (237)
T 2cbz_A 83 RENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQR-------VSLARAVYSNADIYLFD--- 152 (237)
T ss_dssp HHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHH-------HHHHHHHHHCCSEEEEE---
T ss_pred HHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHH-------HHHHHHHhcCCCEEEEe---
Confidence 5544332110000 0000001122 4556666 699999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 142 DPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 142 eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
||++.+|......+...+.... .+.+ ...+... +|+...+. .||++ .+|.+|+++..++
T Consensus 153 EPts~LD~~~~~~i~~~l~~~~-~~~~-~~tviiv-tH~~~~~~-~~d~v-~~l~~G~i~~~g~ 211 (237)
T 2cbz_A 153 DPLSAVDAHVGKHIFENVIGPK-GMLK-NKTRILV-THSMSYLP-QVDVI-IVMSGGKISEMGS 211 (237)
T ss_dssp STTTTSCHHHHHHHHHHTTSTT-STTT-TSEEEEE-CSCSTTGG-GSSEE-EEEETTEEEEEEC
T ss_pred CcccccCHHHHHHHHHHHHHHH-hhcC-CCEEEEE-ecChHHHH-hCCEE-EEEeCCEEEEeCC
Confidence 9999999988654444331000 0100 1111112 48877664 68888 7888898775543
No 53
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.42 E-value=3.7e-15 Score=149.76 Aligned_cols=148 Identities=19% Similarity=0.207 Sum_probs=92.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
+.+++|+++||+||||||||||+++|+|. .+|++|.|.+.+..+.+..+...+ ....++.++...
T Consensus 289 ~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~~~~i~~~~q~~~~----~~~~tv~~~l~~ 353 (538)
T 3ozx_A 289 GEAKEGEIIGILGPNGIGKTTFARILVGE-----------ITADEGSVTPEKQILSYKPQRIFP----NYDGTVQQYLEN 353 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTS-----------SCCSBCCEESSCCCEEEECSSCCC----CCSSBHHHHHHH
T ss_pred ceECCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCcEEEECCeeeEeechhccc----ccCCCHHHHHHH
Confidence 45789999999999999999999999999 689999998877654332221100 001122222111
Q ss_pred ----------------------ccccc---cCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHH
Q 018809 99 ----------------------VRGAH---EGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISA 152 (350)
Q Consensus 99 ----------------------~~~~~---~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~ 152 (350)
..... ...+-|++ ++ +.+++++ .+|+++++| ||++++|+...
T Consensus 354 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~--QR-------v~iAraL~~~p~lLlLD---EPT~gLD~~~~ 421 (538)
T 3ozx_A 354 ASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGEL--QK-------LYIAATLAKEADLYVLD---QPSSYLDVEER 421 (538)
T ss_dssp HCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHH--HH-------HHHHHHHHSCCSEEEEE---STTTTCCHHHH
T ss_pred hhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHH--HH-------HHHHHHHHcCCCEEEEe---CCccCCCHHHH
Confidence 10000 00011111 22 4566666 799999999 99999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcC
Q 018809 153 ELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (350)
Q Consensus 153 el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g 198 (350)
..+...+..+.+. ....+.. .+|++..+..+||+| .+|..+
T Consensus 422 ~~i~~~l~~l~~~---~g~tvi~-vsHdl~~~~~~aDri-~vl~~~ 462 (538)
T 3ozx_A 422 YIVAKAIKRVTRE---RKAVTFI-IDHDLSIHDYIADRI-IVFKGE 462 (538)
T ss_dssp HHHHHHHHHHHHH---TTCEEEE-ECSCHHHHHHHCSEE-EEEEEE
T ss_pred HHHHHHHHHHHHh---CCCEEEE-EeCCHHHHHHhCCEE-EEEeCC
Confidence 6665554333211 1111111 249999999999999 777653
No 54
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.40 E-value=3.4e-14 Score=132.86 Aligned_cols=189 Identities=19% Similarity=0.177 Sum_probs=116.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~ 103 (350)
.+++|+|.||+|||||+|.|+|....+ ++.|+||+....|.+...+ .++.++||||+.....
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~-----------------~~l~l~DTpG~~~~~~ 70 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR-----------------RQIVFVDTPGLHKPMD 70 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT-----------------EEEEEEECCCCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC-----------------cEEEEecCccccchhh
Confidence 369999999999999999999998865 7899999988888766543 3689999999875432
Q ss_pred c-CccccchHHHHHHHHHHHHHHHhhcCCCc-----ee-eecCC--CCCC----chhHHHHHHHHHHHHHHHHHHHHHH-
Q 018809 104 E-GQGLGNSFLSHIRAVDGIFHVLRAFEDPD-----II-HVDDS--VDPV----RDLEVISAELRLKDIEFMERRIEDV- 169 (350)
Q Consensus 104 ~-~~~~~~~~l~~l~~~d~~l~vv~a~~~~~-----vl-~ld~~--~eP~----~~ld~~~~el~~~~l~~l~~~~~~~- 169 (350)
. ...+.......++.+|++++|+|+..... ++ .+... .-|. +.+|....+.. +.+..+.+
T Consensus 71 ~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~------~~~~~~~~~ 144 (301)
T 1wf3_A 71 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE------AMKAYHELL 144 (301)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH------HHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH------HHHHHHHhc
Confidence 1 11122233445566677776666642211 00 01111 1121 23343321110 11111111
Q ss_pred --HHHHhhcccccHHHHHHHHHHHHHHhhcCCcccc-CCC-ChhH-----HHHHHHh-hhhhcCCcchhcccchhhhh
Q 018809 170 --EKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDW-KAAD-----IEILNTF-QLLTAKPVVYLVNMNEKDYQ 237 (350)
Q Consensus 170 --~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~-~~~-t~~~-----~e~i~~~-~~~~~kp~~~~~n~~~~~~~ 237 (350)
...++.| ++...+++++.+.+...++++...++ +.+ ++.+ .+.+|+. .....+++||.+.+..+.+.
T Consensus 145 ~~~~~~~iS-A~~g~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~~~~ 221 (301)
T 1wf3_A 145 PEAEPRMLS-ALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVEEVA 221 (301)
T ss_dssp TTSEEEECC-TTCHHHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEE
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEEEEE
Confidence 0111223 36788999999999888888877765 445 5543 2566766 56678999999988877664
No 55
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.38 E-value=5.6e-15 Score=138.13 Aligned_cols=189 Identities=21% Similarity=0.174 Sum_probs=109.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc-cc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV-RG 101 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~-~~ 101 (350)
+.+++|+|+||||||||+|+|+|....+ ++.|+||.....|.+...+ .++.++||||+. ..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~-----------------~~i~~iDTpG~~~~~ 70 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA-----------------YQAIYVDTPGLHMEE 70 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT-----------------EEEEEESSSSCCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC-----------------eeEEEEECcCCCccc
Confidence 3489999999999999999999998754 7899999988888776543 357889999886 21
Q ss_pred ccc-CccccchHHHHHHHHHHH----------------HHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHH
Q 018809 102 AHE-GQGLGNSFLSHIRAVDGI----------------FHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 164 (350)
Q Consensus 102 ~~~-~~~~~~~~l~~l~~~d~~----------------l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~ 164 (350)
... +..+.......++.+|++ +..+.....|.++++. ..|.... .+.....+..+.+
T Consensus 71 ~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvlN-K~D~~~~-----~~~~~~~l~~l~~ 144 (301)
T 1ega_A 71 KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVN-KVDNVQE-----KADLLPHLQFLAS 144 (301)
T ss_dssp HHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEE-STTTCCC-----HHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEEE-CcccCcc-----HHHHHHHHHHHHH
Confidence 100 000000000111111111 1122222445555542 3333321 1111111111111
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcccc-CCCChhH-----HHHHHHh-hhhhcCCcchhcccchhhhh
Q 018809 165 RIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRL-GDWKAAD-----IEILNTF-QLLTAKPVVYLVNMNEKDYQ 237 (350)
Q Consensus 165 ~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~-~~~t~~~-----~e~i~~~-~~~~~kp~~~~~n~~~~~~~ 237 (350)
.+. +...++.| +|+..++..+++.+...++++...++ +.+++.+ .|.+|+. .....+++||.+.+..+.+.
T Consensus 145 ~~~-~~~~i~iS-A~~g~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~~~~ 222 (301)
T 1ega_A 145 QMN-FLDIVPIS-AETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIERFV 222 (301)
T ss_dssp TSC-CSEEEECC-TTTTTTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEEEEE
T ss_pred hcC-cCceEEEE-CCCCCCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEEEEE
Confidence 100 00112223 48888999999999888988877765 4555543 2556776 56778899999887766553
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.33 E-value=2e-14 Score=144.54 Aligned_cols=162 Identities=18% Similarity=0.213 Sum_probs=90.9
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCC-CCcceeeeeeccc
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA-VPAFLEIHDIAGL 98 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~-~~~~l~~~D~~g~ 98 (350)
.+++|+++||+||||||||||+++|+|. .+|.+|.|.+. ..+.+ .++.. ....+++.++...
T Consensus 308 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl-----------~~p~~G~i~~~-~~i~~-----v~Q~~~~~~~~tv~~~~~~ 370 (538)
T 1yqt_A 308 EIKKGEVIGIVGPNGIGKTTFVKMLAGV-----------EEPTEGKIEWD-LTVAY-----KPQYIKADYEGTVYELLSK 370 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSBCCCCCC-CCEEE-----ECSSCCCCCSSBHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEEC-ceEEE-----EecCCcCCCCCcHHHHHHh
Confidence 3578999999999999999999999999 57788877652 11111 11111 1111222222111
Q ss_pred c-ccccc----------Ccccc---chHHHHH-HHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHH
Q 018809 99 V-RGAHE----------GQGLG---NSFLSHI-RAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFM 162 (350)
Q Consensus 99 ~-~~~~~----------~~~~~---~~~l~~l-~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l 162 (350)
. ..... ..++. .+....+ ..-..-+.+++++ .+|+++++| ||++++|+...+.+...+..+
T Consensus 371 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD---EPt~~LD~~~~~~i~~~l~~l 447 (538)
T 1yqt_A 371 IDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD---EPSAYLDVEQRLAVSRAIRHL 447 (538)
T ss_dssp HHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE---CTTTTCCHHHHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCcccCCHHHHHHHHHHHHHH
Confidence 0 00000 00000 0000000 0000114566666 799999999 999999999986666654433
Q ss_pred HHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhc--CCccccCCC
Q 018809 163 ERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD--GKDVRLGDW 206 (350)
Q Consensus 163 ~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~--g~~~~~~~~ 206 (350)
.+ .....+... +|+...+..+||++ .+|.. |.....++.
T Consensus 448 ~~---~~g~tvi~v-sHd~~~~~~~~drv-~vl~~~~~~~~~~g~~ 488 (538)
T 1yqt_A 448 ME---KNEKTALVV-EHDVLMIDYVSDRL-MVFEGEPGKYGRALPP 488 (538)
T ss_dssp HH---HHTCEEEEE-CSCHHHHHHHCSEE-EEEEEETTTEEEECCC
T ss_pred HH---hCCCEEEEE-eCCHHHHHHhCCEE-EEEeCCcceEeecCCH
Confidence 21 111112122 49999999999998 67764 444444544
No 57
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.33 E-value=2.2e-14 Score=145.95 Aligned_cols=163 Identities=19% Similarity=0.260 Sum_probs=92.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCC-CCCcceeeeeecc
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS-AVPAFLEIHDIAG 97 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~-~~~~~l~~~D~~g 97 (350)
+.+++|+++||+||||||||||+++|+|. .+|.+|.|.+. ..+. |.+|. ..+..+++.++..
T Consensus 377 ~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl-----------~~p~~G~I~~~-~~i~-----~v~Q~~~~~~~~tv~e~~~ 439 (607)
T 3bk7_A 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGV-----------EEPTEGKVEWD-LTVA-----YKPQYIKAEYEGTVYELLS 439 (607)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTS-----------SCCSBSCCCCC-CCEE-----EECSSCCCCCSSBHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCceEEEEe-eEEE-----EEecCccCCCCCcHHHHHH
Confidence 34679999999999999999999999999 57888887652 1121 11111 1111223333221
Q ss_pred cc-cccccCccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHH
Q 018809 98 LV-RGAHEGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEF 161 (350)
Q Consensus 98 ~~-~~~~~~~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~ 161 (350)
.. ............+++.+...+ .-+.+++++ .+|+++++| ||++++|+.....+...+..
T Consensus 440 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD---EPt~~LD~~~~~~l~~~l~~ 516 (607)
T 3bk7_A 440 KIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD---EPSAYLDVEQRLAVSRAIRH 516 (607)
T ss_dssp HHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE---CTTTTCCHHHHHHHHHHHHH
T ss_pred hhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe---CCccCCCHHHHHHHHHHHHH
Confidence 11 000000000011111111100 015567777 799999999 99999999987666555433
Q ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhc--CCccccCCC
Q 018809 162 MERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD--GKDVRLGDW 206 (350)
Q Consensus 162 l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~--g~~~~~~~~ 206 (350)
+.+. ....+... +|+...+..+||++ .+|.. |.....++.
T Consensus 517 l~~~---~g~tvi~v-sHd~~~~~~~adrv-~vl~~~~g~~~~~g~p 558 (607)
T 3bk7_A 517 LMEK---NEKTALVV-EHDVLMIDYVSDRL-IVFEGEPGRHGRALPP 558 (607)
T ss_dssp HHHH---TTCEEEEE-CSCHHHHHHHCSEE-EEEEEETTTEEEECCC
T ss_pred HHHh---CCCEEEEE-eCCHHHHHHhCCEE-EEEcCCcceEEecCCH
Confidence 3211 11111112 49999999999998 67764 444334443
No 58
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.32 E-value=2.3e-13 Score=136.69 Aligned_cols=160 Identities=16% Similarity=0.214 Sum_probs=87.9
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEE-----------EeCCcchhHHHh-hccCCCCCC
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV-----------NIPDERFEWLCQ-LFKPKSAVP 87 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i-----------~~~~~~l~~l~~-~~~~~~~~~ 87 (350)
.+++|+++||+||||||||||+|+|+|. ..|+.|.+ .+.|..+..... .+.....+.
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl-----------~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~ 89 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGE-----------IIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIV 89 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTS-----------SCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEE
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcC-----------CCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchh
Confidence 3568999999999999999999999999 57888887 345544432211 111100000
Q ss_pred cceeeeeecc-cccc-------cccCccccchHHHHHHHHH--------------HHHHHHhhc-CCCceeeecCCCCCC
Q 018809 88 AFLEIHDIAG-LVRG-------AHEGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIHVDDSVDPV 144 (350)
Q Consensus 88 ~~l~~~D~~g-~~~~-------~~~~~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ld~~~eP~ 144 (350)
...+.++... +... ...........++.+...+ --+.+++|+ .+|+++++| ||+
T Consensus 90 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlD---EPt 166 (538)
T 3ozx_A 90 HKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFD---QPS 166 (538)
T ss_dssp EECSCTTGGGTTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE---STT
T ss_pred hccchhhhhhhhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE---CCc
Confidence 0000111000 0000 0000000011111111000 114566666 799999999 999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCc
Q 018809 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200 (350)
Q Consensus 145 ~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~ 200 (350)
+.+|......+...+..+. + ...+... +|++..+..+||++ .+|..|..
T Consensus 167 s~LD~~~~~~l~~~l~~l~----~-g~tii~v-sHdl~~~~~~~d~i-~vl~~~~~ 215 (538)
T 3ozx_A 167 SYLDVRERMNMAKAIRELL----K-NKYVIVV-DHDLIVLDYLTDLI-HIIYGESS 215 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHC----T-TSEEEEE-CSCHHHHHHHCSEE-EEEEEETT
T ss_pred ccCCHHHHHHHHHHHHHHh----C-CCEEEEE-EeChHHHHhhCCEE-EEecCCcc
Confidence 9999988755554433221 1 1112122 49999999999998 77766543
No 59
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.31 E-value=1.3e-13 Score=151.46 Aligned_cols=168 Identities=15% Similarity=0.201 Sum_probs=105.9
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~~ 85 (350)
.-++++.++++|+++||+||||||||||+++|+|. .+|++|.|.++|.++..+ .. .+.+|..
T Consensus 405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~-----------~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~ 473 (1284)
T 3g5u_A 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL-----------YDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEP 473 (1284)
T ss_dssp SEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS-----------SCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSC
T ss_pred ceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCC
Confidence 34678889999999999999999999999999999 689999999999765432 11 2333332
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHH----------------------------HHHHHHHhhc-CCCceee
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV----------------------------DGIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~----------------------------d~~l~vv~a~-~~~~vl~ 136 (350)
.-...++.|+..++...... ....+.++.+ ..-+.++||+ .+|++++
T Consensus 474 ~l~~~ti~eNi~~g~~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~ili 549 (1284)
T 3g5u_A 474 VLFATTIAENIRYGREDVTM----DEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILL 549 (1284)
T ss_dssp CCCSSCHHHHHHHHCSSCCH----HHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred ccCCccHHHHHhcCCCCCCH----HHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEE
Confidence 22223455554433211000 0000000000 0014566666 6999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
+| ||++.+|...+..+...+..+ .+ .+++ .-.+|++..+.. +|+| ..|++|+++..|+.
T Consensus 550 LD---Epts~LD~~~~~~i~~~l~~~----~~-~~t~-i~itH~l~~i~~-~d~i-~vl~~G~i~~~g~~ 608 (1284)
T 3g5u_A 550 LD---EATSALDTESEAVVQAALDKA----RE-GRTT-IVIAHRLSTVRN-ADVI-AGFDGGVIVEQGNH 608 (1284)
T ss_dssp EE---STTCSSCHHHHHHHHHHHHHH----HT-TSEE-EEECSCHHHHTT-CSEE-EECSSSCCCCEECH
T ss_pred EE---CCCCCCCHHHHHHHHHHHHHH----cC-CCEE-EEEecCHHHHHc-CCEE-EEEECCEEEEECCH
Confidence 99 999999998765444432211 00 1111 112499988866 8999 88999998866653
No 60
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.29 E-value=3.3e-13 Score=148.21 Aligned_cols=169 Identities=14% Similarity=0.188 Sum_probs=105.6
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~ 85 (350)
.-++++..+++|+++||+|+||||||||+++|+|. .+|.+|.|.++|.++..+. . .+.+|..
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~-----------~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~ 1116 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF-----------YDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEP 1116 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS-----------SCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSC
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC-----------cCCCCCEEEECCEEcccCCHHHHHhceEEECCCC
Confidence 44678899999999999999999999999999999 6899999999998764321 1 1233332
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHHH----------------------------HHHHHHhhc-CCCceee
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD----------------------------GIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d----------------------------~~l~vv~a~-~~~~vl~ 136 (350)
.....++.|+..+....... . .....+.++.+. --+.++|++ .+|++++
T Consensus 1117 ~l~~~ti~eNi~~~~~~~~~-~-~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLi 1194 (1284)
T 3g5u_A 1117 ILFDCSIAENIAYGDNSRVV-S-YEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILL 1194 (1284)
T ss_dssp CCCSSBHHHHHTCCCSSCCC-C-HHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEE
T ss_pred ccccccHHHHHhccCCCCCC-C-HHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEE
Confidence 22223444444332211000 0 000001111100 014566666 6999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGD 205 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~ 205 (350)
+| ||++.+|...+..+...+... .+ ..++ .-.+|++..+.. ||+| .+|++|+++..|+
T Consensus 1195 LD---EpTs~lD~~~~~~i~~~l~~~----~~-~~tv-i~isH~l~~i~~-~dri-~vl~~G~i~~~g~ 1252 (1284)
T 3g5u_A 1195 LD---EATSALDTESEKVVQEALDKA----RE-GRTC-IVIAHRLSTIQN-ADLI-VVIQNGKVKEHGT 1252 (1284)
T ss_dssp EE---SCSSSCCHHHHHHHHHHHHHH----SS-SSCE-EEECSCTTGGGS-CSEE-EEEETBEEEEEEC
T ss_pred Ee---CCcccCCHHHHHHHHHHHHHh----CC-CCEE-EEEecCHHHHHc-CCEE-EEEECCEEEEECC
Confidence 99 999999998875554443211 00 0111 111499988754 9999 8899999887654
No 61
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.28 E-value=8.8e-13 Score=99.66 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=46.1
Q ss_pred HHhhcCCceeeccCC----CCeeeeec-CCCCChhhhhhccccccccCeeEEEEEe
Q 018809 298 GFSAINLIYFFTAGP----DEVKCWQI-RRQTKAPQAAGTIHTDFERGFICAEVVA 348 (350)
Q Consensus 298 ~~~~l~li~~ft~~~----~e~~a~~~-~~gsta~~~A~~IHsd~~~~fi~A~v~~ 348 (350)
.|+.|+||++||+.+ |..+|.++ ++|+|+.|+|.+||+||.+.|+||.||+
T Consensus 5 ~~~~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG 60 (93)
T 2eki_A 5 SSGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWG 60 (93)
T ss_dssp SSSSCCEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBS
T ss_pred ChhhcCeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEec
Confidence 378999999999653 44579999 9999999999999999999999999996
No 62
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.26 E-value=1.1e-12 Score=124.51 Aligned_cols=89 Identities=37% Similarity=0.658 Sum_probs=77.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~~ 104 (350)
-.|+|+|.+|||||||+|.|++....+++|||||..|+.|.+.+++. ..+.++|+||+...++.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~----------------~~~~l~DtPG~i~~a~~ 222 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG----------------RSFVMADLPGLIEGAHQ 222 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS----------------CEEEEEEHHHHHHHTTC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC----------------ceEEEecCCCCcccccc
Confidence 46899999999999999999998877899999999999999888752 25889999999887777
Q ss_pred CccccchHHHHHHHHHHHHHHHhhc
Q 018809 105 GQGLGNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 105 ~~~~~~~~l~~l~~~d~~l~vv~a~ 129 (350)
..+++..+++.++.+|++++|+|+.
T Consensus 223 ~~~l~~~fl~~i~~~d~ll~VvD~s 247 (342)
T 1lnz_A 223 GVGLGHQFLRHIERTRVIVHVIDMS 247 (342)
T ss_dssp TTTTHHHHHHHHHHCCEEEEEEESS
T ss_pred cchhHHHHHHHHHhccEEEEEEECC
Confidence 7778888999898899999988874
No 63
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.25 E-value=3.6e-13 Score=136.89 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=52.4
Q ss_pred HHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhc--CC
Q 018809 123 FHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD--GK 199 (350)
Q Consensus 123 l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~--g~ 199 (350)
+.+++++ .+|+++++| ||++++|+.....+...+..+.+ .....+... +|++..+..+||++ .+|.. |+
T Consensus 476 v~iAraL~~~p~lLlLD---EPT~gLD~~~~~~i~~ll~~l~~---~~g~tviiv-tHdl~~~~~~aDrv-ivl~~~~g~ 547 (608)
T 3j16_B 476 VAIVLALGIPADIYLID---EPSAYLDSEQRIICSKVIRRFIL---HNKKTAFIV-EHDFIMATYLADKV-IVFEGIPSK 547 (608)
T ss_dssp HHHHHHTTSCCSEEEEC---CTTTTCCHHHHHHHHHHHHHHHH---HHTCEEEEE-CSCHHHHHHHCSEE-EECEEETTT
T ss_pred HHHHHHHHhCCCEEEEE---CCCCCCCHHHHHHHHHHHHHHHH---hCCCEEEEE-eCCHHHHHHhCCEE-EEEeCCCCe
Confidence 4567777 799999999 99999999987665555433321 111112122 49999999999999 67765 66
Q ss_pred ccccCCC
Q 018809 200 DVRLGDW 206 (350)
Q Consensus 200 ~~~~~~~ 206 (350)
.+..++.
T Consensus 548 ~~~~g~p 554 (608)
T 3j16_B 548 NAHARAP 554 (608)
T ss_dssp EEECCCC
T ss_pred EEecCCh
Confidence 6665544
No 64
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.23 E-value=1.5e-12 Score=130.82 Aligned_cols=157 Identities=18% Similarity=0.192 Sum_probs=88.3
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEE---------EeCCcchhHHH-hh----
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV---------NIPDERFEWLC-QL---- 79 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i---------~~~~~~l~~l~-~~---- 79 (350)
-..++ .+.+|+++||+|+||||||||+++|+|. ..|++|.+ .+.|..+.... ..
T Consensus 38 l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl-----------~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 105 (538)
T 1yqt_A 38 LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQ-----------LIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGE 105 (538)
T ss_dssp EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTS-----------SCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTS
T ss_pred ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHh
Confidence 34566 7899999999999999999999999998 46777763 23444432211 00
Q ss_pred ----ccCCC--CCCcc--eeeee----------------eccccccccc-CccccchHHHHHHHHHHHHHHHhhc-CCCc
Q 018809 80 ----FKPKS--AVPAF--LEIHD----------------IAGLVRGAHE-GQGLGNSFLSHIRAVDGIFHVLRAF-EDPD 133 (350)
Q Consensus 80 ----~~~~~--~~~~~--l~~~D----------------~~g~~~~~~~-~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~ 133 (350)
+.++. ..+.. .++.+ ..|+...... -..+..-..++ +.+++++ .+|+
T Consensus 106 ~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQR-------v~iAraL~~~P~ 178 (538)
T 1yqt_A 106 IRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQR-------VAIAAALLRNAT 178 (538)
T ss_dssp CCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHH-------HHHHHHHHSCCS
T ss_pred hhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHH-------HHHHHHHhcCCC
Confidence 00010 00000 00000 0111000000 00000001122 4556666 7999
Q ss_pred eeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcC
Q 018809 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (350)
Q Consensus 134 vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g 198 (350)
++++| ||++.+|....+.+...+..+.+ ....+... +|++..+..+||++ .+|..+
T Consensus 179 lLlLD---EPTs~LD~~~~~~l~~~L~~l~~----~g~tvi~v-sHd~~~~~~~~dri-~vl~~~ 234 (538)
T 1yqt_A 179 FYFFD---EPSSYLDIRQRLNAARAIRRLSE----EGKSVLVV-EHDLAVLDYLSDII-HVVYGE 234 (538)
T ss_dssp EEEEE---STTTTCCHHHHHHHHHHHHHHHH----TTCEEEEE-CSCHHHHHHHCSEE-EEEEEE
T ss_pred EEEEE---CCcccCCHHHHHHHHHHHHHHHh----cCCEEEEE-eCCHHHHHHhCCEE-EEEcCc
Confidence 99999 99999999887665555433321 11111122 49999999999999 677654
No 65
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.23 E-value=1.4e-12 Score=132.76 Aligned_cols=160 Identities=15% Similarity=0.195 Sum_probs=89.1
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEE---------EeCCcchhHHH-hh----
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV---------NIPDERFEWLC-QL---- 79 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i---------~~~~~~l~~l~-~~---- 79 (350)
-..++ .+.+|+++||+||||||||||+++|+|. ..|++|.+ .+.|..+.... ..
T Consensus 108 l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl-----------l~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 175 (607)
T 3bk7_A 108 LYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQ-----------LIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGE 175 (607)
T ss_dssp EECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTS-----------SCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTS
T ss_pred eCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCC-----------CCCCCCccccccchhhheeCCEehhhhhhhhhhhh
Confidence 34555 7899999999999999999999999999 56777774 23454433211 00
Q ss_pred ----ccCCCC--CCcc--eeeeeecccccccccCccccchHHHHHHHHH--------------HHHHHHhhc-CCCceee
Q 018809 80 ----FKPKSA--VPAF--LEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD--------------GIFHVLRAF-EDPDIIH 136 (350)
Q Consensus 80 ----~~~~~~--~~~~--l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d--------------~~l~vv~a~-~~~~vl~ 136 (350)
+.++.. .+.. .++.++.... .........++.+...+ --+.+++++ .+|++++
T Consensus 176 ~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLl 251 (607)
T 3bk7_A 176 IRPVVKPQYVDLLPKAVKGKVRELLKKV----DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYF 251 (607)
T ss_dssp CCCEEECSCGGGGGGTCCSBHHHHHHHT----CCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred cceEEeechhhhchhhccccHHHHhhhh----HHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 001100 0000 0111110000 00000011111111000 114566666 7999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g 198 (350)
+| ||++.+|....+.+...+..+.+ ....+... +|++..+..++|++ .+|..+
T Consensus 252 LD---EPTs~LD~~~~~~l~~~L~~l~~----~g~tvIiv-sHdl~~~~~~adri-~vl~~~ 304 (607)
T 3bk7_A 252 FD---EPSSYLDIRQRLKVARVIRRLAN----EGKAVLVV-EHDLAVLDYLSDVI-HVVYGE 304 (607)
T ss_dssp EE---CTTTTCCHHHHHHHHHHHHHHHH----TTCEEEEE-CSCHHHHHHHCSEE-EEEESC
T ss_pred EE---CCcccCCHHHHHHHHHHHHHHHh----cCCEEEEE-ecChHHHHhhCCEE-EEECCC
Confidence 99 99999999987665555433321 11111112 49999999999998 777644
No 66
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.23 E-value=1.6e-12 Score=132.18 Aligned_cols=70 Identities=17% Similarity=0.149 Sum_probs=47.7
Q ss_pred HHHHhhc-CCCceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc
Q 018809 123 FHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201 (350)
Q Consensus 123 l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~ 201 (350)
+.+++++ .+|+++++| ||++.+|......+...+..+.+ ....+... +|++..+..++|++ .+|..++..
T Consensus 230 v~iAraL~~~p~llllD---EPts~LD~~~~~~l~~~l~~l~~----~g~tvi~v-tHdl~~~~~~~drv-~vl~~~~~~ 300 (608)
T 3j16_B 230 FAIGMSCVQEADVYMFD---EPSSYLDVKQRLNAAQIIRSLLA----PTKYVICV-EHDLSVLDYLSDFV-CIIYGVPSV 300 (608)
T ss_dssp HHHHHHHHSCCSEEEEE---CTTTTCCHHHHHHHHHHHHGGGT----TTCEEEEE-CSCHHHHHHHCSEE-EEEESCTTT
T ss_pred HHHHHHHHhCCCEEEEE---CcccCCCHHHHHHHHHHHHHHHh----CCCEEEEE-eCCHHHHHHhCCEE-EEEeCCccc
Confidence 4566776 799999999 99999999886555444332211 01111112 49999999999999 777765543
No 67
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.20 E-value=8.6e-12 Score=137.32 Aligned_cols=170 Identities=13% Similarity=0.121 Sum_probs=108.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH-----h--hccCCCC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC-----Q--LFKPKSA 85 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~-----~--~~~~~~~ 85 (350)
-=++++.+|++|+++||||++|||||||+++|.|. .+|.+|.|.++|.++..+. . .+.||..
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl-----------~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp 1162 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF-----------YDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEP 1162 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS-----------SCCSSSEEEETTEETTTBCHHHHHTTEEEECSSC
T ss_pred cccceeEEECCCCEEEEECCCCChHHHHHHHHhcC-----------ccCCCCEEEECCEEhhhCCHHHHHhheEEECCCC
Confidence 33678899999999999999999999999999999 6899999999998765432 2 2445554
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHHHH----------------------------HHHHHhhc-CCCceee
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG----------------------------IFHVLRAF-EDPDIIH 136 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~----------------------------~l~vv~a~-~~~~vl~ 136 (350)
.-..-++.|+..++..+.. . -..+..+.++.+.+ .+.++||+ .+|++++
T Consensus 1163 ~LF~gTIreNI~~gld~~~-~-sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILi 1240 (1321)
T 4f4c_A 1163 TLFDCSIAENIIYGLDPSS-V-TMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILL 1240 (1321)
T ss_dssp CCCSEEHHHHHSSSSCTTT-S-CHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEE
T ss_pred EeeCccHHHHHhccCCCCC-C-CHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEE
Confidence 4444566666443311100 0 00111111111111 25577777 8999999
Q ss_pred ecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 137 ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
|| ||++.+|..++..+...+..+.+ .+++ ..-+|.+..+ .-||+| .+|++|+++..|+.
T Consensus 1241 LD---EaTSaLD~~tE~~Iq~~l~~~~~-----~~Tv-I~IAHRLsTi-~~aD~I-~Vld~G~IvE~Gth 1299 (1321)
T 4f4c_A 1241 LD---EATSALDTESEKVVQEALDRARE-----GRTC-IVIAHRLNTV-MNADCI-AVVSNGTIIEKGTH 1299 (1321)
T ss_dssp EE---SCCCSTTSHHHHHHHHHHTTTSS-----SSEE-EEECSSSSTT-TTCSEE-EEESSSSEEEEECH
T ss_pred Ee---CccccCCHHHHHHHHHHHHHHcC-----CCEE-EEeccCHHHH-HhCCEE-EEEECCEEEEECCH
Confidence 99 99999999886544433221100 0000 0113776544 347888 88999999877653
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.19 E-value=2.5e-12 Score=136.06 Aligned_cols=45 Identities=31% Similarity=0.363 Sum_probs=41.8
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~ 70 (350)
..++.+++.|+++||+||||||||||+++|+|. ..|++|.|.+++
T Consensus 690 ~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl-----------l~P~sG~I~~~~ 734 (986)
T 2iw3_A 690 TDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE-----------LLPTSGEVYTHE 734 (986)
T ss_dssp EEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS-----------SCCSEEEEEECT
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC-----------CCCCceEEEEcC
Confidence 567888999999999999999999999999999 689999999875
No 69
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.16 E-value=2.7e-11 Score=133.42 Aligned_cols=169 Identities=15% Similarity=0.223 Sum_probs=112.3
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH-----Hh--hccCCC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL-----CQ--LFKPKS 84 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l-----~~--~~~~~~ 84 (350)
|.=++++.++++|+.++||||+|||||||+++|.|. .+|.+|.|.++|.++..+ .. .|.+|.
T Consensus 432 ~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~-----------~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~ 500 (1321)
T 4f4c_A 432 PILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY-----------YDVLKGKITIDGVDVRDINLEFLRKNVAVVSQE 500 (1321)
T ss_dssp CSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS-----------SCCSEEEEEETTEETTTSCHHHHHHHEEEECSS
T ss_pred ceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccc-----------cccccCcccCCCccchhccHHHHhhcccccCCc
Confidence 334678899999999999999999999999999999 699999999999765432 22 355555
Q ss_pred CCCcceeeeeecccccccccCccccchHHHHHHHHHH----------------------------HHHHHhhc-CCCcee
Q 018809 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDG----------------------------IFHVLRAF-EDPDII 135 (350)
Q Consensus 85 ~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~----------------------------~l~vv~a~-~~~~vl 135 (350)
..-..-++.|+..++..... .+++.+.++.+.+ -+.++||+ .+|+++
T Consensus 501 ~~Lf~~TI~eNI~~g~~~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~Il 576 (1321)
T 4f4c_A 501 PALFNCTIEENISLGKEGIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKIL 576 (1321)
T ss_dssp CCCCSEEHHHHHHTTCTTCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred ceeeCCchhHHHhhhcccch----HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEE
Confidence 54455677777766542111 1122222222211 15677887 899999
Q ss_pred eecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccccCCC
Q 018809 136 HVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDW 206 (350)
Q Consensus 136 ~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~~~~~ 206 (350)
+|| ||++.+|...+..+...+..+.+ .++. .-.+|.+..+ .-+|+| .+|++|+++..|+.
T Consensus 577 iLD---E~tSaLD~~te~~i~~~l~~~~~-----~~T~-iiiaHrls~i-~~aD~I-ivl~~G~ive~Gth 636 (1321)
T 4f4c_A 577 LLD---EATSALDAESEGIVQQALDKAAK-----GRTT-IIIAHRLSTI-RNADLI-ISCKNGQVVEVGDH 636 (1321)
T ss_dssp EEE---STTTTSCTTTHHHHHHHHHHHHT-----TSEE-EEECSCTTTT-TTCSEE-EEEETTEEEEEECH
T ss_pred EEe---cccccCCHHHHHHHHHHHHHHhC-----CCEE-EEEcccHHHH-HhCCEE-EEeeCCeeeccCCH
Confidence 999 99999998876444443321110 0111 0114777644 457888 78899998876653
No 70
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.04 E-value=1.4e-10 Score=119.66 Aligned_cols=73 Identities=10% Similarity=0.137 Sum_probs=48.7
Q ss_pred HHHHhhc-CCCc--eeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHh----
Q 018809 123 FHVLRAF-EDPD--IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWL---- 195 (350)
Q Consensus 123 l~vv~a~-~~~~--vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L---- 195 (350)
+.+++|+ .+|+ ++++| ||++++|..+...+...+..+.+ ....+.. .+|++..+. .||++ ..|
T Consensus 211 v~iArAL~~~p~~~lLlLD---EPtsgLD~~~~~~l~~~l~~l~~----~g~tvi~-vtHd~~~~~-~~d~i-i~l~~g~ 280 (670)
T 3ux8_A 211 IRLATQIGSRLTGVLYVLD---EPSIGLHQRDNDRLIATLKSMRD----LGNTLIV-VEHDEDTML-AADYL-IDIGPGA 280 (670)
T ss_dssp HHHHHHHHTCCCSCEEEEE---CTTTTCCGGGHHHHHHHHHHHHH----TTCEEEE-ECCCHHHHH-HCSEE-EEECSSS
T ss_pred HHHHHHHhhCCCCCEEEEE---CCccCCCHHHHHHHHHHHHHHHH----cCCEEEE-EeCCHHHHh-hCCEE-EEecccc
Confidence 5567777 6877 99999 99999999887666555443321 1111111 249998654 59988 666
Q ss_pred --hcCCccccCC
Q 018809 196 --QDGKDVRLGD 205 (350)
Q Consensus 196 --~~g~~~~~~~ 205 (350)
.+|+++..++
T Consensus 281 ~~~~G~i~~~g~ 292 (670)
T 3ux8_A 281 GIHGGEVVAAGT 292 (670)
T ss_dssp GGGCCSEEEEEC
T ss_pred cccCCEEEEecC
Confidence 7788776654
No 71
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.5e-11 Score=119.62 Aligned_cols=44 Identities=25% Similarity=0.144 Sum_probs=39.7
Q ss_pred cccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcce-E-EEeCC
Q 018809 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA-R-VNIPD 70 (350)
Q Consensus 16 ~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G-~-i~~~~ 70 (350)
.++..+..|++++|+||||||||||+++|+|+ ..|..| . |.+++
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl-----------~~p~~G~~pI~vdg 175 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSY-----------ALKFNAYQPLYINL 175 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHT-----------THHHHCCCCEEEEC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCc-----------ccccCCceeEEEcC
Confidence 46778899999999999999999999999999 578899 7 88876
No 72
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.03 E-value=9.2e-11 Score=99.84 Aligned_cols=62 Identities=32% Similarity=0.386 Sum_probs=51.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
++|.+++|+|+||+|||||+|.|++.... ++++|++|.....+.+.+++. .+.++|+||...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~Dt~G~~~ 64 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM-----------------PLHIIDTAGLRE 64 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE-----------------EEEEEECCCCSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe-----------------EEEEEECCCccc
Confidence 35789999999999999999999998654 478999999988899888763 378999999854
No 73
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.02 E-value=1.6e-10 Score=106.09 Aligned_cols=67 Identities=27% Similarity=0.223 Sum_probs=35.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHH----hhccC-CCCCCcceeeeeecccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC----QLFKP-KSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~----~~~~~-~~~~~~~l~~~D~~g~~ 99 (350)
..++|+||||||||||+|+|+|. ..|.+|.+.++|.++.... ..+.+ ...+...++++|+++++
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~-----------~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKS-----------QVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHH-----------HC------------CCCCCSCCEEEESCC----CCEEEEECCCC--
T ss_pred eEEEEECCCCCCHHHHHHHHhCC-----------CCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhh
Confidence 46899999999999999999999 5788999988876432110 01112 22344568999999997
Q ss_pred ccc
Q 018809 100 RGA 102 (350)
Q Consensus 100 ~~~ 102 (350)
...
T Consensus 72 ~~~ 74 (270)
T 3sop_A 72 DQI 74 (270)
T ss_dssp CCS
T ss_pred hhc
Confidence 644
No 74
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.02 E-value=3.7e-11 Score=127.18 Aligned_cols=155 Identities=16% Similarity=0.239 Sum_probs=88.6
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeee
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHD 94 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D 94 (350)
.+++.++.+|+++||+|+||||||||+++|+|..+ ..++.. ...+.++++.. . ......+++.+
T Consensus 452 ~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i--~g~~~~---~~~~~~~v~q~-~----------~~~~~~ltv~e 515 (986)
T 2iw3_A 452 NKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV--DGFPTQ---EECRTVYVEHD-I----------DGTHSDTSVLD 515 (986)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS--TTCCCT---TTSCEEETTCC-C----------CCCCTTSBHHH
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCccc---cceeEEEEccc-c----------cccccCCcHHH
Confidence 56788999999999999999999999999996432 111110 01112222210 0 00011112222
Q ss_pred e------------------cccc-c---ccccCccccchHHHHHHHHHHHHHHHhhc-CCCceeeecCCCCCCchhHHHH
Q 018809 95 I------------------AGLV-R---GAHEGQGLGNSFLSHIRAVDGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVIS 151 (350)
Q Consensus 95 ~------------------~g~~-~---~~~~~~~~~~~~l~~l~~~d~~l~vv~a~-~~~~vl~ld~~~eP~~~ld~~~ 151 (350)
. .|+. . ......+.|++ ++ +.+++++ .+|++++|| ||++++|...
T Consensus 516 ~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqk--QR-------vaLArAL~~~P~lLLLD---EPTs~LD~~~ 583 (986)
T 2iw3_A 516 FVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWK--MK-------LALARAVLRNADILLLD---EPTNHLDTVN 583 (986)
T ss_dssp HHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHH--HH-------HHHHHHHHTTCSEEEEE---STTTTCCHHH
T ss_pred HHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHH--HH-------HHHHHHHhcCCCEEEEE---CCccCCCHHH
Confidence 1 2221 0 00001111111 22 3455555 699999999 9999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCcc-ccCCC
Q 018809 152 AELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDW 206 (350)
Q Consensus 152 ~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~-~~~~~ 206 (350)
.+.+...+.. ....+... +|+...+..+|+++ .+|++|+++ +.++.
T Consensus 584 ~~~l~~~L~~-------~g~tvIiv-SHdl~~l~~~adri-i~L~~G~iv~~~G~~ 630 (986)
T 2iw3_A 584 VAWLVNYLNT-------CGITSITI-SHDSVFLDNVCEYI-INYEGLKLRKYKGNF 630 (986)
T ss_dssp HHHHHHHHHH-------SCSEEEEE-CSCHHHHHHHCSEE-EEEETTEEEEEESCH
T ss_pred HHHHHHHHHh-------CCCEEEEE-ECCHHHHHHhCCEE-EEEECCeeecCCCCH
Confidence 6544443221 11111112 49999999999999 888999885 45554
No 75
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.01 E-value=5.5e-11 Score=113.84 Aligned_cols=64 Identities=34% Similarity=0.593 Sum_probs=43.6
Q ss_pred ccCCcE-EEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 21 FSSHLK-IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 21 i~~g~~-igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+.|.. ++|+|+||||||||+|+|+|....++++||+|+++..|.+.++|. .+.++|++|+.
T Consensus 175 ~~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~-----------------~v~l~DT~G~i 237 (364)
T 2qtf_A 175 KRNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR-----------------KIMLVDTVGFI 237 (364)
T ss_dssp ----CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE-----------------EEEEEECCCBC
T ss_pred hhcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE-----------------EEEEEeCCCch
Confidence 345665 999999999999999999999876689999999999999999873 36899999986
Q ss_pred cc
Q 018809 100 RG 101 (350)
Q Consensus 100 ~~ 101 (350)
..
T Consensus 238 ~~ 239 (364)
T 2qtf_A 238 RG 239 (364)
T ss_dssp SS
T ss_pred hc
Confidence 53
No 76
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.95 E-value=1.1e-10 Score=99.61 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=26.1
Q ss_pred ccccccCCcEEEEEcCCCCcHHHHHHHHH
Q 018809 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (350)
Q Consensus 17 ~~~~i~~g~~igliG~ngaGKSTL~n~L~ 45 (350)
++.++++|++++|+||||||||||++++.
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 56789999999999999999999999544
No 77
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.92 E-value=1.3e-10 Score=115.11 Aligned_cols=92 Identities=32% Similarity=0.380 Sum_probs=73.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+.|..++|+|+||+|||||+|.|++.... ++++|+||+++..+.+.++|. .+.++||||+.
T Consensus 240 ~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~-----------------~~~l~DTaG~~ 302 (482)
T 1xzp_A 240 LNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGI-----------------LFRIVDTAGVR 302 (482)
T ss_dssp HHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTE-----------------EEEEEESSCCC
T ss_pred ccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCe-----------------EEEEEECCCcc
Confidence 346789999999999999999999998754 589999999999999998763 47899999987
Q ss_pred -cccccCcccc-chHHHHHHHHHHHHHHHhhc
Q 018809 100 -RGAHEGQGLG-NSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 100 -~~~~~~~~~~-~~~l~~l~~~d~~l~vv~a~ 129 (350)
........++ ...+..++.+|++++|+|+.
T Consensus 303 ~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s 334 (482)
T 1xzp_A 303 SETNDLVERLGIERTLQEIEKADIVLFVLDAS 334 (482)
T ss_dssp SSCCTTCCCCCHHHHHHHHHHCSEEEEEEETT
T ss_pred ccchhhHHHHHHHHHHHHhhcccEEEEEecCC
Confidence 5444333333 33467788888888888864
No 78
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.91 E-value=2.7e-10 Score=103.14 Aligned_cols=63 Identities=16% Similarity=0.091 Sum_probs=47.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCc--cccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPF--CTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~--tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+..+|+|+|.+|+|||||+|.|+|....++.+++ +|..+..+.+.+.+. .+.++||||+.
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~-----------------~i~liDTPG~~ 81 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKC-----------------HVEVVDTPDIF 81 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTE-----------------EEEEEECCSCS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCc-----------------EEEEEECCCCC
Confidence 34578999999999999999999999877655544 788888888887753 48899999996
Q ss_pred cc
Q 018809 100 RG 101 (350)
Q Consensus 100 ~~ 101 (350)
..
T Consensus 82 ~~ 83 (247)
T 3lxw_A 82 SS 83 (247)
T ss_dssp ST
T ss_pred CC
Confidence 43
No 79
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.89 E-value=6e-10 Score=99.91 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=46.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCC--ccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP--FCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p--~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
..+++|+|++|+|||||+|+|+|.....+.+| ++|..+..+.+.+.+. .+.++|+||+...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~i~liDTpG~~~~ 91 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET-----------------ELVVVDTPGIFDT 91 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE-----------------EEEEEECCSCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc-----------------eEEEEECCCccCC
Confidence 35899999999999999999999887666666 7788888888877753 4789999999765
Q ss_pred cc
Q 018809 102 AH 103 (350)
Q Consensus 102 ~~ 103 (350)
..
T Consensus 92 ~~ 93 (239)
T 3lxx_A 92 EV 93 (239)
T ss_dssp --
T ss_pred CC
Confidence 43
No 80
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.86 E-value=1.8e-10 Score=105.01 Aligned_cols=60 Identities=32% Similarity=0.511 Sum_probs=53.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
+++|+|.+|||||||||.|+|....++++|++|.....|.+.+++. .+.++|+||.....
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~-----------------~~~lvDtpG~~~~~ 62 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH-----------------LIEITDLPGVYSLV 62 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE-----------------EEEEEECCCCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe-----------------EEEEEeCCCccccc
Confidence 6899999999999999999999877789999999999999988763 47899999986543
No 81
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.86 E-value=4.9e-10 Score=109.88 Aligned_cols=87 Identities=31% Similarity=0.398 Sum_probs=56.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHE 104 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~~ 104 (350)
+++|||.||+|||||||.|+|...++ +++|++|++...+.+.+.|. .++++||+|+......
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~-----------------~~~l~DT~G~~~~~~~ 65 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK-----------------TFKLVDTCGVFDNPQD 65 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE-----------------EEEEEECTTTTSSGGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe-----------------EEEEEECCCccccccc
Confidence 68999999999999999999987664 89999999999999998874 4789999998753221
Q ss_pred --CccccchHHHHHHHHHHHHHHHhhc
Q 018809 105 --GQGLGNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 105 --~~~~~~~~l~~l~~~d~~l~vv~a~ 129 (350)
...+..+....++.+|++++|+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~ad~il~V~D~~ 92 (439)
T 1mky_A 66 IISQKMKEVTLNMIREADLVLFVVDGK 92 (439)
T ss_dssp CCCHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 1122334455667788887777764
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.86 E-value=8.6e-10 Score=104.16 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=40.8
Q ss_pred cccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcc
Q 018809 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (350)
Q Consensus 16 ~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~ 72 (350)
.++..+++|+.++|+|+||||||||+|+|+|. .+|..|.|.++|..
T Consensus 163 ~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~-----------~~~~~g~i~i~~~~ 208 (330)
T 2pt7_A 163 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEF-----------IPKEERIISIEDTE 208 (330)
T ss_dssp HHHHHHHHTCCEEEEESTTSCHHHHHHHGGGG-----------SCTTSCEEEEESSC
T ss_pred hhhhhccCCCEEEEECCCCCCHHHHHHHHhCC-----------CcCCCcEEEECCee
Confidence 35667789999999999999999999999999 68899999998753
No 83
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.83 E-value=8.7e-10 Score=93.12 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=41.6
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcch
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l 73 (350)
..++..+++|++++|+||||||||||+++|+|. . |.+|.|.++|..+
T Consensus 24 ~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~-----------l-~~~G~V~~~g~~i 70 (158)
T 1htw_A 24 ILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG-----------I-GHQGNVKSPTYTL 70 (158)
T ss_dssp HHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH-----------T-TCCSCCCCCTTTC
T ss_pred hccccccCCCCEEEEECCCCCCHHHHHHHHHHh-----------C-CCCCeEEECCEee
Confidence 456778899999999999999999999999998 6 8889998887653
No 84
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.81 E-value=1.3e-09 Score=106.94 Aligned_cols=60 Identities=40% Similarity=0.525 Sum_probs=45.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
..+++|+|+||||||||+|+|+|.... ++++|+||.++..|.+.++|. .+.++|++|+.+
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~-----------------~~~l~Dt~G~~~ 240 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR-----------------KYVFVDTAGLRR 240 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE-----------------EEEESSCSCC--
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE-----------------EEEEEECCCCcc
Confidence 358999999999999999999998764 489999999999999999874 367899999753
No 85
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.79 E-value=5.9e-10 Score=102.49 Aligned_cols=61 Identities=34% Similarity=0.510 Sum_probs=52.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
..++|+|.+|||||||+|.|+|....++++|++|..+..|.+.+.+. .+.++|+||.....
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~-----------------~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH-----------------QVTLVDLPGTYSLT 64 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC-----------------EEEEEECCCCSCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC-----------------ceEEEECcCCCccc
Confidence 57999999999999999999999876789999999999998887652 47899999987543
No 86
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.78 E-value=2.1e-10 Score=100.85 Aligned_cols=30 Identities=23% Similarity=0.204 Sum_probs=25.3
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
..+.+|++++|+||||||||||+|+|+|..
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999999999999985
No 87
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.78 E-value=8.7e-09 Score=86.61 Aligned_cols=59 Identities=36% Similarity=0.577 Sum_probs=46.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
.+++|+|+||+|||||+|.|+|.....+++|++|..+..+.+.+++. .+.++|+||...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~l~i~Dt~G~~~ 62 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGE-----------------KFKVVDLPGVYS 62 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTE-----------------EEEEEECCCCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCc-----------------EEEEEECCCccc
Confidence 47999999999999999999998766788999999988888877642 488999999764
No 88
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.76 E-value=6.6e-10 Score=114.57 Aligned_cols=73 Identities=14% Similarity=0.192 Sum_probs=48.4
Q ss_pred HHHHhhc-CCC---ceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHh---
Q 018809 123 FHVLRAF-EDP---DIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWL--- 195 (350)
Q Consensus 123 l~vv~a~-~~~---~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L--- 195 (350)
+.+++++ .+| +++++| ||++++|..+...+...+..+.+ ....+.. .+|++..+ ..||++ .+|
T Consensus 552 v~iAraL~~~p~~p~llllD---EPt~~LD~~~~~~i~~~l~~l~~----~g~tvi~-vtHd~~~~-~~~d~i-~~l~~~ 621 (670)
T 3ux8_A 552 VKLAAELHRRSNGRTLYILD---EPTTGLHVDDIARLLDVLHRLVD----NGDTVLV-IEHNLDVI-KTADYI-IDLGPE 621 (670)
T ss_dssp HHHHHHHHSCCCSCEEEEEE---STTTTCCHHHHHHHHHHHHHHHH----TTCEEEE-ECCCHHHH-TTCSEE-EEEESS
T ss_pred HHHHHHHhhCCCCCcEEEEe---CCCCCCCHHHHHHHHHHHHHHHH----CCCEEEE-EeCCHHHH-HhCCEE-EEecCC
Confidence 4455665 455 599999 99999999987666555433321 1111111 24999876 569999 778
Q ss_pred ---hcCCccccCC
Q 018809 196 ---QDGKDVRLGD 205 (350)
Q Consensus 196 ---~~g~~~~~~~ 205 (350)
.+|+++..++
T Consensus 622 ~g~~~G~i~~~g~ 634 (670)
T 3ux8_A 622 GGDRGGQIVAVGT 634 (670)
T ss_dssp SGGGCCEEEEEEC
T ss_pred cCCCCCEEEEecC
Confidence 7899887765
No 89
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.76 E-value=4.1e-08 Score=89.93 Aligned_cols=64 Identities=28% Similarity=0.433 Sum_probs=40.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCC------ccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFP------FCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p------~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
..++|+|.+|+|||||+|.|++......++| .+|..+......+... .....++++||||+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-------------~~~~~l~liDTpG~ 75 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG-------------GVQLLLTIVDTPGF 75 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---------------CCEEEEEEECCCC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecC-------------CeEEEEEEEECCCc
Confidence 4799999999999999999999877666664 4555555544444321 01125899999998
Q ss_pred ccc
Q 018809 99 VRG 101 (350)
Q Consensus 99 ~~~ 101 (350)
...
T Consensus 76 ~d~ 78 (274)
T 3t5d_A 76 GDA 78 (274)
T ss_dssp SCC
T ss_pred ccc
Confidence 654
No 90
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.75 E-value=1.1e-08 Score=95.48 Aligned_cols=47 Identities=21% Similarity=0.257 Sum_probs=41.4
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcc
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~ 72 (350)
.+++..+.+|++++|+||||||||||+++|+|. ..|..|.|.+.|.+
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~-----------l~~~~g~V~l~g~d 137 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR-----------LKNEGTKVLMAAGD 137 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHH-----------HHHTTCCEEEECCC
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHH-----------HHHcCCeEEEEeec
Confidence 467778899999999999999999999999998 57788998887754
No 91
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.73 E-value=2e-08 Score=95.71 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=41.8
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcch
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l 73 (350)
.+++..+.+|++++|+|+||||||||++.|+|. ..|..|.|.+.|.++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~-----------l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHR-----------LKNEGTKVLMAAGDT 195 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHH-----------HHHTTCCEEEECCCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhh-----------ccccCCEEEEecccc
Confidence 467778899999999999999999999999998 567889988877543
No 92
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.71 E-value=1.2e-08 Score=93.78 Aligned_cols=59 Identities=34% Similarity=0.515 Sum_probs=50.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
.+++|+|+||||||||||.|+|....++++|++|..+..|.+.. + ..+.++|+||....
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~-----------------~~l~l~DtpG~~~~ 62 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-N-----------------KDLEIQDLPGIYSM 62 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-C-----------------TTEEEEECCCCSCS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-C-----------------CeEEEEECCCcCcc
Confidence 57999999999999999999998777899999999988887643 2 24889999997643
No 93
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.69 E-value=1.6e-09 Score=95.43 Aligned_cols=63 Identities=25% Similarity=0.225 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC-C-CCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLA-I-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~-~-~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
...+++|+|.+|+|||||+|.|+|.. . .++++|++|.......+...+ ...+.++|+||+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA----------------EPVAHLVDLPGYGY 91 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT----------------SCSEEEEECCCCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC----------------CCcEEEEcCCCCCc
Confidence 34689999999999999999999986 3 447888888776544443111 13588999999765
Q ss_pred c
Q 018809 101 G 101 (350)
Q Consensus 101 ~ 101 (350)
.
T Consensus 92 ~ 92 (223)
T 4dhe_A 92 A 92 (223)
T ss_dssp S
T ss_pred c
Confidence 4
No 94
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.68 E-value=1.4e-09 Score=106.52 Aligned_cols=88 Identities=24% Similarity=0.264 Sum_probs=50.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~ 103 (350)
-+++|+|+||+|||||||.|+|...++ +++|++|++...+.+.+.+. .+.++||+|+.....
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~-----------------~~~l~DT~G~~~~~~ 66 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY-----------------DFNLIDTGGIDIGDE 66 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSS-----------------CCEEEC---------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCc-----------------eEEEEECCCCCCcch
Confidence 379999999999999999999987764 89999999988887776653 478999999863321
Q ss_pred c-CccccchHHHHHHHHHHHHHHHhhc
Q 018809 104 E-GQGLGNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 104 ~-~~~~~~~~l~~l~~~d~~l~vv~a~ 129 (350)
. ...+.......++.+|++++|+|+.
T Consensus 67 ~~~~~~~~~~~~~~~~ad~il~vvD~~ 93 (436)
T 2hjg_A 67 PFLAQIRQQAEIAMDEADVIIFMVNGR 93 (436)
T ss_dssp CHHHHHHHHHHHHHHHCSEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1 1122233445667788877776653
No 95
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.66 E-value=5.9e-08 Score=80.52 Aligned_cols=59 Identities=25% Similarity=0.296 Sum_probs=39.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+++++|++|+|||||+|.+++... ...++.|+.......+.+++.. ..+.++|+||..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~ 63 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQE 63 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECCEE---------------EEEEEEECCCcc
Confidence 5789999999999999999998753 2344444443333444455431 257899999953
No 96
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.66 E-value=1.1e-09 Score=108.21 Aligned_cols=92 Identities=27% Similarity=0.248 Sum_probs=43.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+.|..++|+|+||+|||||+|.|++.... ++++|+||.+.....+.++|. .+.++||||+.
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~-----------------~l~liDT~G~~ 292 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKT-----------------MFRLTDTAGLR 292 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTE-----------------EEEEEC-----
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCe-----------------EEEEEECCCCC
Confidence 456788999999999999999999998654 489999999999999988763 48899999986
Q ss_pred cccccCcccc-chHHHHHHHHHHHHHHHhhc
Q 018809 100 RGAHEGQGLG-NSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 100 ~~~~~~~~~~-~~~l~~l~~~d~~l~vv~a~ 129 (350)
........++ ......++.+|++++|+|+.
T Consensus 293 ~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s 323 (476)
T 3gee_A 293 EAGEEIEHEGIRRSRMKMAEADLILYLLDLG 323 (476)
T ss_dssp ---------------CCCSSCSEEEEEEETT
T ss_pred cchhHHHHHHHHHHHhhcccCCEEEEEEECC
Confidence 5322111111 11223344566666666554
No 97
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.65 E-value=3.7e-08 Score=85.36 Aligned_cols=77 Identities=18% Similarity=0.176 Sum_probs=39.0
Q ss_pred CcCCCCcccccccc-cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCC
Q 018809 8 SKEAPAERPILGRF-SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86 (350)
Q Consensus 8 ~~~~~~~~~~~~~i-~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~ 86 (350)
+.++|.+.+..+-- ....+++|+|.+|+|||||+|.|++.... ..++.|+.......+.+.+.
T Consensus 7 ~~~~~~~~~~q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~--------------- 70 (201)
T 3oes_A 7 HSSGRENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKD--------------- 70 (201)
T ss_dssp ----------------CEEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC-------------------
T ss_pred cccccccCCCCCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCE---------------
Confidence 44456655444332 35678999999999999999999987543 23333322222222333222
Q ss_pred Ccceeeeeeccccc
Q 018809 87 PAFLEIHDIAGLVR 100 (350)
Q Consensus 87 ~~~l~~~D~~g~~~ 100 (350)
...+.++|++|...
T Consensus 71 ~~~~~l~Dt~G~~~ 84 (201)
T 3oes_A 71 EFHLHLVDTAGQDE 84 (201)
T ss_dssp CEEEEEEEECCCCT
T ss_pred EEEEEEEECCCccc
Confidence 23578999999543
No 98
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.64 E-value=3e-08 Score=88.65 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=27.4
Q ss_pred ccccccCCcEEEEEcCCCCcHHHHHHHHHc
Q 018809 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (350)
Q Consensus 17 ~~~~i~~g~~igliG~ngaGKSTL~n~L~g 46 (350)
+.+.+++|++++|+||||||||||+++|++
T Consensus 23 l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 23 IEGGFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTTSEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346899999999999999999999999993
No 99
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.63 E-value=6.4e-08 Score=81.95 Aligned_cols=60 Identities=22% Similarity=0.254 Sum_probs=42.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
.+++|+|++|+|||||+|.+++.. -.+.++.|+.......+.+++.. ..+.++|++|...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~ 66 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQ-FVDSYDPTIENTFTKLITVNGQE---------------YHLQLVDTAGQDE 66 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCCCT
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCCccccEEEEEEECCEE---------------EEEEEEeCCCchh
Confidence 579999999999999999999654 23445555444444555555432 3478999999654
No 100
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.63 E-value=8.2e-08 Score=82.96 Aligned_cols=60 Identities=25% Similarity=0.281 Sum_probs=42.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
-..++|+|++|+|||||+|.+++... ..+++.|+.......+.+++.. ..+.++|++|..
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~ 73 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQE 73 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CTTCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTT
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCccceEEEEEEEECCEE---------------EEEEEEcCCChh
Confidence 36899999999999999999998752 3455555544444555555431 257899999953
No 101
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.63 E-value=2e-07 Score=77.16 Aligned_cols=58 Identities=26% Similarity=0.346 Sum_probs=37.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
.+++++|++|+|||||+|.+++.... ..++.++.......+.+++. ...+.++|+||.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~G~ 61 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFI-EKYDPTIEDFYRKEIEVDSS---------------PSVLEILDTAGT 61 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCc-ccCCCCcceeEEEEEEECCE---------------EEEEEEEECCCc
Confidence 57999999999999999999976432 22333322222333444432 134789999994
No 102
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.62 E-value=9.4e-08 Score=80.94 Aligned_cols=60 Identities=25% Similarity=0.281 Sum_probs=41.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
-.+|+++|++|+|||||+|.|++... ...++.|+.......+.+++.. ..+.++|++|..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~ 77 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQE 77 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCEE---------------EEEEEEECCCCc
Confidence 36899999999999999999998652 2344545444444444554431 257899999953
No 103
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.60 E-value=2.4e-08 Score=85.17 Aligned_cols=60 Identities=35% Similarity=0.543 Sum_probs=50.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
.+++|+|++|||||||+|.|+|.....+++|++|..+..+.+.+.+. .+.++|+||....
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGE-----------------KFKVVDLPGVYSL 67 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTE-----------------EEEEEECCCCSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCc-----------------EEEEEECCCcCcc
Confidence 58999999999999999999997655678899998888888887652 4789999997543
No 104
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.60 E-value=8.7e-09 Score=85.38 Aligned_cols=59 Identities=39% Similarity=0.483 Sum_probs=41.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
+++++|++|+|||||+|.+++.... ..++|.+|.......+.+++. .+.++|+||....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~l~Dt~G~~~~ 62 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG-----------------RFLLVDTGGLWSG 62 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE-----------------EEEEEECGGGCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc-----------------eEEEEECCCCCCc
Confidence 6899999999999999999998754 477888888887777777652 4789999998653
No 105
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.60 E-value=3.3e-08 Score=91.23 Aligned_cols=61 Identities=34% Similarity=0.470 Sum_probs=38.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~-~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
..+..++++|.||+|||||+|.|+|... .+++.|++|..+. .+.++ ..+.++|+||+..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVG------------------KELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEET------------------TTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeC------------------CCEEEEECcCcCC
Confidence 3456899999999999999999999874 5589999998765 23332 2488999999975
Q ss_pred cc
Q 018809 101 GA 102 (350)
Q Consensus 101 ~~ 102 (350)
..
T Consensus 178 ~~ 179 (282)
T 1puj_A 178 PK 179 (282)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 106
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.60 E-value=3.2e-09 Score=104.57 Aligned_cols=87 Identities=24% Similarity=0.282 Sum_probs=52.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~ 103 (350)
-+++|+|+||||||||+|.|+|.... ++++|++|.....+.+.+.+. .++++||+|+.....
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~-----------------~~~liDT~G~~~~~~ 86 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNY-----------------DFNLIDTGGIDIGDE 86 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSS-----------------CCEEECCCC------
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCc-----------------eEEEEECCCCCCcch
Confidence 48999999999999999999998765 478999999888777765542 478999999863221
Q ss_pred c-CccccchHHHHHHHHHHHHHHHhh
Q 018809 104 E-GQGLGNSFLSHIRAVDGIFHVLRA 128 (350)
Q Consensus 104 ~-~~~~~~~~l~~l~~~d~~l~vv~a 128 (350)
. ...+.......++.+|++++|+|+
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~ 112 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNG 112 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEES
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeC
Confidence 1 112223344556777888777765
No 107
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.59 E-value=2.6e-08 Score=91.10 Aligned_cols=60 Identities=33% Similarity=0.517 Sum_probs=51.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
.+++|+|+||||||||+|+|+|.....+++|++|.....+.+.+.+. .+.++|+||....
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~l~DtpG~~~~ 63 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK-----------------EFLVVDLPGIYSL 63 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE-----------------EEEEEECCCCSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc-----------------eEEEEeCCCcccc
Confidence 47999999999999999999999776689999999988888887753 4789999998653
No 108
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.59 E-value=5.4e-08 Score=88.77 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=37.6
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc-ceEEEeCCcch
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNIPDERF 73 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~-~G~i~~~~~~l 73 (350)
+++|+.++|+||||||||||+++|+|. .+|. +|.|.+.|.++
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~-----------~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDY-----------INQTKSYHIITIEDPI 64 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHH-----------HHHHCCCEEEEEESSC
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHh-----------CCCCCCCEEEEcCCcc
Confidence 789999999999999999999999998 5777 89998877554
No 109
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.59 E-value=2.8e-08 Score=90.48 Aligned_cols=60 Identities=32% Similarity=0.481 Sum_probs=51.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
.+++|+|.+|||||||||.|+|....++++|++|.....|.+...+ ..+.++|+||....
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~-----------------~~~~l~DtpG~~~~ 65 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG-----------------YTINLIDLPGTYSL 65 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT-----------------EEEEEEECCCCSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC-----------------eEEEEEECCCcCcc
Confidence 5799999999999999999999877778999999998888887754 24899999998654
No 110
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.58 E-value=2.6e-08 Score=90.27 Aligned_cols=63 Identities=19% Similarity=0.100 Sum_probs=49.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCc-cccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPF-CTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~-tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
...+|+|+|++|||||||+|.|+|....+ +..|. +|.....+.+.+.+. .+.++||||+..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~i~iiDTpG~~~ 83 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNR-----------------EIVIIDTPDMFS 83 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTE-----------------EEEEEECCGGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCC-----------------EEEEEECcCCCC
Confidence 34689999999999999999999987544 33455 677777777777653 489999999875
Q ss_pred cc
Q 018809 101 GA 102 (350)
Q Consensus 101 ~~ 102 (350)
..
T Consensus 84 ~~ 85 (260)
T 2xtp_A 84 WK 85 (260)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 111
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.56 E-value=2.4e-08 Score=94.55 Aligned_cols=45 Identities=29% Similarity=0.553 Sum_probs=36.3
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~ 70 (350)
..++..+.+|++++|+|+||||||||+|+|+|. ..|..|.+.+.+
T Consensus 46 ~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~-----------~~~~~g~v~i~~ 90 (337)
T 2qm8_A 46 DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSL-----------LTAAGHKVAVLA 90 (337)
T ss_dssp HHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHH-----------HHHTTCCEEEEE
T ss_pred HhCCcccCCCeEEEEECCCCCCHHHHHHHHHHh-----------hhhCCCEEEEEE
Confidence 346677899999999999999999999999987 455566665544
No 112
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.56 E-value=2.6e-08 Score=94.85 Aligned_cols=63 Identities=32% Similarity=0.356 Sum_probs=52.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
.....++++|+||||||||+|.|+|....++++|++|..+..+.+...+ ..+.++|+||+...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~ 227 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY-----------------FRYQIIDTPGLLDR 227 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT-----------------EEEEEEECTTTSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC-----------------ceEEEEeCCCcccc
Confidence 3557899999999999999999999876667899999988877766553 24789999998653
No 113
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.55 E-value=5.8e-08 Score=85.67 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=27.6
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+.+++|++++|+||||||||||+++|+|.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999995
No 114
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.54 E-value=2.1e-09 Score=105.90 Aligned_cols=64 Identities=30% Similarity=0.436 Sum_probs=49.5
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
..+.|..++|+|++|+|||||+|.|+|.... ++++|+||.+.....+.++|. .+.++||||+
T Consensus 220 ~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~-----------------~v~liDT~G~ 282 (462)
T 3geh_A 220 LLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGI-----------------PVQVLDTAGI 282 (462)
T ss_dssp HHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTE-----------------EEEECC----
T ss_pred hhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCE-----------------EEEEEECCcc
Confidence 3457888999999999999999999998655 488999999988888888763 3789999998
Q ss_pred cc
Q 018809 99 VR 100 (350)
Q Consensus 99 ~~ 100 (350)
..
T Consensus 283 ~~ 284 (462)
T 3geh_A 283 RE 284 (462)
T ss_dssp --
T ss_pred cc
Confidence 54
No 115
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.53 E-value=7.6e-08 Score=82.67 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
++++|+||||||||||+++|+|..
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999984
No 116
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.53 E-value=9.3e-08 Score=82.43 Aligned_cols=61 Identities=26% Similarity=0.360 Sum_probs=46.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
.+++|+|+||||||||+|.++|........|..+..+..|.+.++|.. ..++++|++|..+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~---------------~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT---------------IKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECSCCS
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE---------------EEEEEEECCCCcc
Confidence 589999999999999999999986554445555555678889888753 2356799998643
No 117
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.52 E-value=6.4e-09 Score=99.66 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC------CCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeec
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL------AIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~------~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~ 96 (350)
.+..++++|.+|+|||||+|+|+|. ...++++|+||..+..+. +. ..+.++|+|
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~------------------~~~~liDtP 220 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--LE------------------SGATLYDTP 220 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--CS------------------TTCEEEECC
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--eC------------------CCeEEEeCC
Confidence 4668999999999999999999997 344589999998765432 22 237899999
Q ss_pred ccccccccCccccchHHH
Q 018809 97 GLVRGAHEGQGLGNSFLS 114 (350)
Q Consensus 97 g~~~~~~~~~~~~~~~l~ 114 (350)
|+.........+....+.
T Consensus 221 G~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 221 GIINHHQMAHFVDARDLK 238 (369)
T ss_dssp SCCCCSSGGGGSCTTTHH
T ss_pred CcCcHHHHHHHHhHHHHH
Confidence 998654333334444333
No 118
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.52 E-value=8.6e-08 Score=82.97 Aligned_cols=60 Identities=23% Similarity=0.309 Sum_probs=45.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+++|+|+||||||||++.|+|........|..+..+..|.+.++|.. ..+.++|++|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~---------------~~~~i~Dt~g~~ 65 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT---------------IKAQIWDTAGQE 65 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE---------------EEEEEEECSSGG
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCch
Confidence 578999999999999999999986544444555556678888888753 246789999854
No 119
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=98.51 E-value=2.3e-08 Score=97.88 Aligned_cols=87 Identities=22% Similarity=0.237 Sum_probs=53.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~ 103 (350)
.+++|+|.||+|||||+|.|+|.... ++++|+||.....+.+.++|. .+.++||||..+...
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~-----------------~~~l~DT~G~~~~~~ 238 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ-----------------EFVIVDTAGMRKKGK 238 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE-----------------EEEETTHHHHTCBTT
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe-----------------EEEEEECCCcCcCcc
Confidence 58999999999999999999998765 589999999998888888763 378999999865433
Q ss_pred cCcccc----chHHHHHHHHHHHHHHHhh
Q 018809 104 EGQGLG----NSFLSHIRAVDGIFHVLRA 128 (350)
Q Consensus 104 ~~~~~~----~~~l~~l~~~d~~l~vv~a 128 (350)
...... .+.+..++.+|+++.|+|+
T Consensus 239 ~~~~~e~~~~~~~~~~~~~ad~~llv~D~ 267 (436)
T 2hjg_A 239 VYETTEKYSVLRALKAIDRSEVVAVVLDG 267 (436)
T ss_dssp BCCCCSHHHHHHHHHHHHHCSEEEEEEET
T ss_pred ccchHHHHHHHHHHHHHHhCCEEEEEEcC
Confidence 211111 1122344555555555554
No 120
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.50 E-value=3.2e-08 Score=87.66 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=24.7
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
-++++..+++|++++|+||||||||||+++|+|.
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4678899999999999999999999999999998
No 121
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.49 E-value=1.3e-07 Score=88.04 Aligned_cols=66 Identities=24% Similarity=0.321 Sum_probs=29.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHH---H-hhcc-CCCCCCcceeeeeecccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL---C-QLFK-PKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l---~-~~~~-~~~~~~~~l~~~D~~g~~ 99 (350)
..++|+|+||||||||+|+|.|.. ..|.+| +.+.|.++..- . ..+. +.......++++|++|+.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~----------~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTD----------LYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-----------------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC----------ccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 466999999999999999999974 245555 44433322110 0 0111 112234468999999986
Q ss_pred cc
Q 018809 100 RG 101 (350)
Q Consensus 100 ~~ 101 (350)
..
T Consensus 88 ~~ 89 (301)
T 2qnr_A 88 DA 89 (301)
T ss_dssp --
T ss_pred hh
Confidence 43
No 122
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.49 E-value=8.4e-09 Score=88.27 Aligned_cols=59 Identities=27% Similarity=0.235 Sum_probs=42.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
.-.+++++|++|||||||+|.+++.... .++.+++|....... .+ ..+.++|+||+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~--~~------------------~~~~i~Dt~G~~~~ 81 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL--VN------------------SKYYFVDLPGYGYA 81 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE--ET------------------TTEEEEECCCBSSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE--EC------------------CcEEEEECCCCccc
Confidence 3458999999999999999999998643 356666665543222 11 24789999997543
No 123
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.48 E-value=3.1e-07 Score=79.10 Aligned_cols=62 Identities=26% Similarity=0.278 Sum_probs=39.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
...+++++|++|+|||||++.+++.... ..++.|+.......+.+++. ...+.++|++|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~ 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI-WEYDPTLESTYRHQATIDDE---------------VVSMEILDTAGQED 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCCCCceEEEEEEECCE---------------EEEEEEEECCCCCc
Confidence 3468999999999999999999987432 22222222222223344432 13578999999654
No 124
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.46 E-value=1e-07 Score=90.72 Aligned_cols=28 Identities=18% Similarity=0.144 Sum_probs=25.6
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
...+|..++|+||||||||||+++|+|.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 3467889999999999999999999998
No 125
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.44 E-value=1.4e-08 Score=106.38 Aligned_cols=73 Identities=11% Similarity=0.203 Sum_probs=48.4
Q ss_pred HHHHhhc-CC---CceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHh---
Q 018809 123 FHVLRAF-ED---PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWL--- 195 (350)
Q Consensus 123 l~vv~a~-~~---~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L--- 195 (350)
+.+++++ .+ |++++|| ||++++|+.+.+.+...+..+.+ ....+... +|++..+ ..||++ ..|
T Consensus 739 v~LAraL~~~p~~p~lLILD---EPTsGLD~~~~~~l~~lL~~L~~----~G~tVIvi-sHdl~~i-~~aDri-i~L~p~ 808 (842)
T 2vf7_A 739 IKLATELRRSGRGGTVYVLD---EPTTGLHPADVERLQRQLVKLVD----AGNTVIAV-EHKMQVV-AASDWV-LDIGPG 808 (842)
T ss_dssp HHHHHTTSSCCSSCEEEEEE---CTTTTCCHHHHHHHHHHHHHHHH----TTCEEEEE-CCCHHHH-TTCSEE-EEECSS
T ss_pred HHHHHHHHhCCCCCCEEEEE---CCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEE-cCCHHHH-HhCCEE-EEECCC
Confidence 5567777 43 7999999 99999999887655554432211 11111111 4999988 789998 777
Q ss_pred ---hcCCccccCC
Q 018809 196 ---QDGKDVRLGD 205 (350)
Q Consensus 196 ---~~g~~~~~~~ 205 (350)
..|+++..++
T Consensus 809 ~g~~~G~Iv~~g~ 821 (842)
T 2vf7_A 809 AGEDGGRLVAQGT 821 (842)
T ss_dssp SGGGCCSEEEEEC
T ss_pred CCCCCCEEEEEcC
Confidence 5777776543
No 126
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.44 E-value=3.2e-07 Score=78.54 Aligned_cols=58 Identities=28% Similarity=0.314 Sum_probs=37.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
..+++|+|++|||||||++.+++........| |.......+.+++.. ..+.++|++|.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~---------------~~l~i~Dt~G~ 77 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQEESP--EGGRFKKEIVVDGQS---------------YLLLIRDEGGP 77 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCCCCCCT--TCEEEEEEEEETTEE---------------EEEEEEECSSS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCC--CcceEEEEEEECCEE---------------EEEEEEECCCC
Confidence 46899999999999999998887643211111 111112245555532 34778999985
No 127
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.44 E-value=2.3e-08 Score=86.77 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~ 72 (350)
|++++|+|+||||||||+++|+|. .. .+| +.++|.+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~-----------~~-~~G-i~~~g~~ 36 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEV-----------LK-SSG-VPVDGFY 36 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHH-----------HH-HTT-CCCEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhh-----------cc-cCC-EEEcCEe
Confidence 688999999999999999999998 44 667 6665543
No 128
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.43 E-value=1.1e-07 Score=82.66 Aligned_cols=62 Identities=23% Similarity=0.229 Sum_probs=38.6
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcCC-C-CCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeec
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLA-I-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~~-~-~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~ 96 (350)
..+..|.+++|+|+||||||||+|+|+|.. . .+++.+++|.. .+.+.+.+ .+.++|+|
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~--~~~~~~~~------------------~~~l~Dt~ 80 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL--INLFEVAD------------------GKRLVDLP 80 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC--EEEEEEET------------------TEEEEECC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee--eEEEEecC------------------CEEEEECc
Confidence 567899999999999999999999999985 1 11344444432 12222221 36789999
Q ss_pred cccc
Q 018809 97 GLVR 100 (350)
Q Consensus 97 g~~~ 100 (350)
|...
T Consensus 81 G~~~ 84 (210)
T 1pui_A 81 GYGY 84 (210)
T ss_dssp CCC-
T ss_pred CCcc
Confidence 9754
No 129
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.43 E-value=2.5e-07 Score=89.42 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=28.7
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
..++..+.+| +++|+|+||||||||+++|.++.
T Consensus 52 ~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 52 TQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred eeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 4567788899 99999999999999999997653
No 130
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.43 E-value=6.5e-08 Score=86.11 Aligned_cols=55 Identities=16% Similarity=0.079 Sum_probs=30.5
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHH-cCCCCC-CCCCccccCCcceEE
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLT-KLAIPA-ENFPFCTIEPNEARV 66 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~-g~~~~~-~~~p~tT~~p~~G~i 66 (350)
.-+.+++..+++|+++||+||||||||||+++|+ |..... ...+.+|..|..|.+
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~ 71 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK 71 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc
Confidence 3567899999999999999999999999999999 884322 233445556655543
No 131
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.42 E-value=6e-08 Score=95.40 Aligned_cols=89 Identities=21% Similarity=0.212 Sum_probs=59.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
...+++++|.+|+|||||+|.|+|.... ++++|+||.....+.+.++|. .++++||||+.+.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~-----------------~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ-----------------EFVIVDTAGMRKK 256 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE-----------------EEEETTGGGTTTB
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc-----------------eEEEEECCCCCcC
Confidence 4578999999999999999999988643 489999999999999888763 4789999998754
Q ss_pred cccCcc----ccchHHHHHHHHHHHHHHHhh
Q 018809 102 AHEGQG----LGNSFLSHIRAVDGIFHVLRA 128 (350)
Q Consensus 102 ~~~~~~----~~~~~l~~l~~~d~~l~vv~a 128 (350)
...... .....+..++.+|+++.|+|+
T Consensus 257 ~~~~~~~e~~~~~~~~~~~~~ad~~llviD~ 287 (456)
T 4dcu_A 257 GKVYETTEKYSVLRALKAIDRSEVVAVVLDG 287 (456)
T ss_dssp TTBCCCCSHHHHHHHHHHHHHCSEEEEEEET
T ss_pred cccchHHHHHHHHHHHHHHhhCCEEEEEEeC
Confidence 432111 111223445566666665555
No 132
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.41 E-value=2.2e-07 Score=79.71 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=34.8
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcch
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l 73 (350)
.+.+|++++|+|+||||||||+++|+|. +..|.+.+++..+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-------------~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-------------PGVPKVHFHSDDL 45 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-------------SSSCEEEECTTHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-------------cCCCeEEEcccch
Confidence 4788999999999999999999999986 4578888887543
No 133
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.41 E-value=8.6e-07 Score=94.01 Aligned_cols=142 Identities=15% Similarity=0.056 Sum_probs=76.1
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHH--------HcCCCCCCCCCccccCCcce-EEEeCCcchhHHHhhccCCCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTL--------TKLAIPAENFPFCTIEPNEA-RVNIPDERFEWLCQLFKPKSA 85 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L--------~g~~~~~~~~p~tT~~p~~G-~i~~~~~~l~~l~~~~~~~~~ 85 (350)
+.++..+..|++++|+||||||||||++++ .|.. -|..+ .+.+-+
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~-----------vpa~~~~~~~~d--------------- 706 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCF-----------VPCESAEVSIVD--------------- 706 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCC-----------BSEEEEEEECCS---------------
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCc-----------cccccccchHHH---------------
Confidence 456677788999999999999999999999 5542 22222 111111
Q ss_pred CCcceeeeeecccccccccCccccchHHHHHHHHHHHHHHHhhcCCCceeeecCCCCCCchhHHHHHHHHHHH-HHHHHH
Q 018809 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKD-IEFMER 164 (350)
Q Consensus 86 ~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~~~~~vl~ld~~~eP~~~ld~~~~el~~~~-l~~l~~ 164 (350)
.++...|.......+.+.+. .+..+ +..++++..+|+++++| ||.+++|..+...+.+. ++.+.+
T Consensus 707 -----~i~~~ig~~d~l~~~lStf~--~e~~~----~a~il~~a~~~sLlLLD---Ep~~GlD~~~~~~i~~~il~~l~~ 772 (934)
T 3thx_A 707 -----CILARVGAGDSQLKGVSTFM--AEMLE----TASILRSATKDSLIIID---ELGRGTSTYDGFGLAWAISEYIAT 772 (934)
T ss_dssp -----EEEEECC---------CHHH--HHHHH----HHHHHHHCCTTCEEEEE---SCSCSSCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHhcCchhhHHHhHhhhH--HHHHH----HHHHHHhccCCcEEEEe---CCCCCCCHHHHHHHHHHHHHHHHh
Confidence 12222232221111111111 11112 23444556789999999 99999999876444232 222211
Q ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCCccc
Q 018809 165 RIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVR 202 (350)
Q Consensus 165 ~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L~~g~~~~ 202 (350)
+....+.. .+|+.+ +..+++++ ..+.+|++..
T Consensus 773 ---~~g~~vl~-aTH~~e-l~~lad~~-~~v~ng~v~~ 804 (934)
T 3thx_A 773 ---KIGAFCMF-ATHFHE-LTALANQI-PTVNNLHVTA 804 (934)
T ss_dssp ---TTCCEEEE-EESCGG-GGGGGGTC-TTEEEEEEEE
T ss_pred ---cCCCEEEE-EcCcHH-HHHHhccc-ceeEeeEEEE
Confidence 01111111 248854 45678887 6677776543
No 134
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.40 E-value=3.3e-07 Score=91.69 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=42.3
Q ss_pred Ccccccc-cccCCcEEEEEcCCCCcHHHHHHH--HHcCCCCCCCCCccccCCcceEEEeCCcc
Q 018809 13 AERPILG-RFSSHLKIGIVGLPNVGKSTLFNT--LTKLAIPAENFPFCTIEPNEARVNIPDER 72 (350)
Q Consensus 13 ~~~~~~~-~i~~g~~igliG~ngaGKSTL~n~--L~g~~~~~~~~p~tT~~p~~G~i~~~~~~ 72 (350)
.-+.+++ .+++|++++|+|+||||||||+++ ++|. .+|..|.+++.++.
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl-----------~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGI-----------IEFDEPGVFVTFEE 78 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHH-----------HHHCCCEEEEESSS
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHH-----------HhCCCCEEEEEEeC
Confidence 3456776 999999999999999999999999 6798 56788999998865
No 135
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.40 E-value=6.1e-08 Score=95.61 Aligned_cols=49 Identities=18% Similarity=0.134 Sum_probs=43.2
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchh
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~ 74 (350)
-..++..+++ ++++|+||||||||||+++|+|+ ..|++|.|.++|..+.
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTA-----------LIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHH-----------HCCCTTTCCCCCTTSC
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcC-----------CCCCCCEEEECCEEcc
Confidence 3577888999 99999999999999999999999 6888999998886543
No 136
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.38 E-value=1.2e-07 Score=79.60 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=43.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+++++|++|+|||||+|.+++........|..+.......+.+++.. ..+.++|+||..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~ 74 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQE 74 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSG
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeE---------------EEEEEEECCCcH
Confidence 589999999999999999999875544444444444445555565532 258899999953
No 137
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.38 E-value=1.1e-07 Score=81.53 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=46.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
-.+++|+|++|+|||||+|.|++........|.+|.......+.+++.. ..+.++|++|..
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~ 76 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQE 76 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEE---------------EEEEEEEECCSG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEE---------------EEEEEEECCCcH
Confidence 3589999999999999999999976555556666666666666666532 257899999943
No 138
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.37 E-value=1.6e-08 Score=89.22 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=29.1
Q ss_pred cccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 16 ~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+...+.+|++++|+||||||||||+++|+|.
T Consensus 14 ~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 14 HYVDAIDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHHHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HHHHhccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45556899999999999999999999999997
No 139
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.37 E-value=8e-08 Score=82.48 Aligned_cols=65 Identities=31% Similarity=0.239 Sum_probs=42.8
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.-..-.+++|+|++|+|||||+|.+++........|..+.......+.+++.. ..++++|++|..
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~ 81 (191)
T 2a5j_A 17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQ---------------IKLQIWDTAGQE 81 (191)
T ss_dssp TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEE---------------EEEEEECCTTGG
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEECCCch
Confidence 33445789999999999999999999876443333433444444455555432 357899999954
No 140
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.37 E-value=1.8e-07 Score=88.71 Aligned_cols=49 Identities=22% Similarity=0.173 Sum_probs=42.3
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhH
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW 75 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~ 75 (350)
+.+ ..+.+|+++||+|+||||||||+++|+|. .+|+.|.+.+.|++...
T Consensus 63 d~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~-----------~~~~~g~i~~~G~~~~e 111 (347)
T 2obl_A 63 DGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG-----------ASADIIVLALIGERGRE 111 (347)
T ss_dssp HHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH-----------SCCSEEEEEEESCCHHH
T ss_pred Eee-eeecCCCEEEEECCCCCCHHHHHHHHhcC-----------CCCCEEEEEEecccHHH
Confidence 445 67889999999999999999999999999 57889999988876433
No 141
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.37 E-value=5.5e-07 Score=81.83 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=51.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~-~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
..+++++|.+|+|||||+|.|+|... ..++++++|..+....+.+.+. .++++||||+....
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~l~liDTpG~~~~~ 98 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGF-----------------TINIIDTPGLVEAG 98 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTE-----------------EEEEEECCCSEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCe-----------------eEEEEECCCCCCcc
Confidence 46899999999999999999999876 4478999999888888777653 48999999987643
No 142
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.36 E-value=1.6e-07 Score=89.67 Aligned_cols=46 Identities=22% Similarity=0.223 Sum_probs=41.3
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCc
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~ 71 (350)
..++..+++|+.++|+|+||||||||+|+|+|. .+|..|.|.+.|.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~-----------~~~~~g~I~ie~~ 211 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQE-----------IPFDQRLITIEDV 211 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT-----------SCTTSCEEEEESS
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc-----------CCCCceEEEECCc
Confidence 456778899999999999999999999999999 6889999999874
No 143
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.35 E-value=9.8e-08 Score=100.84 Aligned_cols=74 Identities=11% Similarity=0.143 Sum_probs=47.9
Q ss_pred HHHHhhc-CC---CceeeecCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHh---
Q 018809 123 FHVLRAF-ED---PDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWL--- 195 (350)
Q Consensus 123 l~vv~a~-~~---~~vl~ld~~~eP~~~ld~~~~el~~~~l~~l~~~~~~~~~~~~~~~~h~~~~~~~l~~~i~~~L--- 195 (350)
+.+++++ .+ |++++|| ||++++|..+.+.++..+..+.+ ....+.. .+|++..+.. +|+| ..|
T Consensus 814 V~LAraL~~~p~~p~LLILD---EPTsGLD~~~~~~L~~lL~~L~~----~G~TVIv-I~HdL~~i~~-ADrI-ivLgp~ 883 (916)
T 3pih_A 814 IKLASELRKRDTGRTLYILD---EPTVGLHFEDVRKLVEVLHRLVD----RGNTVIV-IEHNLDVIKN-ADHI-IDLGPE 883 (916)
T ss_dssp HHHHHHHTSCCCSSEEEEEE---STTTTCCHHHHHHHHHHHHHHHH----TTCEEEE-ECCCHHHHTT-CSEE-EEEESS
T ss_pred HHHHHHHhhCCCCCCEEEEE---CCCCCCCHHHHHHHHHHHHHHHh----cCCEEEE-EeCCHHHHHh-CCEE-EEecCC
Confidence 4566666 33 5799999 99999999987665554433211 0111111 1499987754 9998 777
Q ss_pred ---hcCCccccCCC
Q 018809 196 ---QDGKDVRLGDW 206 (350)
Q Consensus 196 ---~~g~~~~~~~~ 206 (350)
..|+++..|+.
T Consensus 884 gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 884 GGKEGGYIVATGTP 897 (916)
T ss_dssp SGGGCCEEEEEESH
T ss_pred CCCCCCEEEEEcCH
Confidence 77888877653
No 144
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.35 E-value=7.6e-08 Score=80.23 Aligned_cols=60 Identities=27% Similarity=0.306 Sum_probs=38.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+++++|++|+|||||+|.+++........|..+.......+.+++.. ..+.++|+||..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~ 63 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK---------------VKLQIWDTAGQE 63 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCE---------------EEEEEECCTTGG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEeCCCCh
Confidence 478999999999999999999876544444444433334445554431 357899999954
No 145
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.35 E-value=6.7e-08 Score=90.10 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=35.3
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEe---CCcchhHHHhhccCCCCCCcceeeeee
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI---PDERFEWLCQLFKPKSAVPAFLEIHDI 95 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~---~~~~l~~l~~~~~~~~~~~~~l~~~D~ 95 (350)
..+.+|++++|+|+||||||||+|+|+|. ..|..|.|.+ .|+.+......+. .+ ...++|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~-----------~~~~~G~I~~~~~~G~~tt~~~~~~~----~~-~g~v~dt 231 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPE-----------LGLRTNEISEHLGRGKHTTRHVELIH----TS-GGLVADT 231 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC------------------------------CCCCCEEE----ET-TEEEESS
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccc-----------ccccccceeeecCCCcccccHHHHhh----cC-CEEEecC
Confidence 46778999999999999999999999998 5778888877 5543221111110 01 2357888
Q ss_pred ccccc
Q 018809 96 AGLVR 100 (350)
Q Consensus 96 ~g~~~ 100 (350)
||+..
T Consensus 232 pg~~~ 236 (307)
T 1t9h_A 232 PGFSS 236 (307)
T ss_dssp CSCSS
T ss_pred CCccc
Confidence 88754
No 146
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.35 E-value=7.7e-07 Score=74.79 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=49.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
+...+++++|++|||||||++.+++........|.+|.......+.+++. .+.++|+||...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK-----------------KITFLDTPGHEA 67 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE-----------------EEEESCCCSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc-----------------eEEEEECCCCHH
Confidence 35678999999999999999999998766667777777777777777653 478999999643
No 147
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.35 E-value=1.6e-07 Score=78.03 Aligned_cols=60 Identities=25% Similarity=0.300 Sum_probs=39.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+++++|++|+|||||+|.+++........|..+.......+.+++. ...+.++|+||..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~ 63 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEH---------------TVKFEIWDTAGQE 63 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTE---------------EEEEEEEEECCSG
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCE---------------EEEEEEEECCCCh
Confidence 47899999999999999999987543322233222233344445442 1358899999943
No 148
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.34 E-value=1.3e-07 Score=87.86 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=29.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEe---CCcch
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI---PDERF 73 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~---~~~~l 73 (350)
..+..|++++|+|+||||||||+|+|+|. ..|.+|.|.+ .|+.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~-----------~~~~~G~i~~~~~~g~~~ 210 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPG-----------LKLRVSEVSEKLQRGRHT 210 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTT-----------CCCC-------------C
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccc-----------ccccccceecccCCCCCc
Confidence 34567999999999999999999999999 5789999988 66543
No 149
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.34 E-value=2.5e-07 Score=89.85 Aligned_cols=35 Identities=31% Similarity=0.332 Sum_probs=31.3
Q ss_pred cccccccccCCcE--EEEEcCCCCcHHHHHHHHHcCC
Q 018809 14 ERPILGRFSSHLK--IGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 14 ~~~~~~~i~~g~~--igliG~ngaGKSTL~n~L~g~~ 48 (350)
-..++..+++|++ +||+|+||||||||+|+|+|..
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 4567888999999 9999999999999999999985
No 150
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.34 E-value=1.9e-07 Score=89.36 Aligned_cols=60 Identities=27% Similarity=0.377 Sum_probs=42.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC-------CCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeee
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLA-------IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDI 95 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~-------~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~ 95 (350)
.+..++++|.+|+|||||+|+|+|.. ..++++|+||..+..+. +. ..+.++||
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~------------------~~~~liDt 218 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--LD------------------EESSLYDT 218 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--SS------------------SSCEEEEC
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--ec------------------CCeEEEeC
Confidence 46789999999999999999999963 22479999998765432 22 23789999
Q ss_pred ccccccc
Q 018809 96 AGLVRGA 102 (350)
Q Consensus 96 ~g~~~~~ 102 (350)
||+....
T Consensus 219 PG~~~~~ 225 (368)
T 3h2y_A 219 PGIINHH 225 (368)
T ss_dssp CCBCCTT
T ss_pred CCcCcHH
Confidence 9997653
No 151
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.33 E-value=1.1e-06 Score=85.38 Aligned_cols=24 Identities=38% Similarity=0.528 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAI 49 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~ 49 (350)
.++|+|+||||||||+|+|+|...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 569999999999999999999854
No 152
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.32 E-value=1.7e-07 Score=87.11 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~ 49 (350)
-.++|+|.+|||||||+|+|+|...
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 4799999999999999999999865
No 153
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.31 E-value=1.6e-07 Score=81.63 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=44.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
......|+|+|++|+|||||+|.|++........|..+.......+.+++.. ..+.++|+||..
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~ 80 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK---------------VKLQLWDTAGQE 80 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEE---------------EEEEEECCTTGG
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEE---------------EEEEEEeCCCcH
Confidence 3456789999999999999999999876544444555544445556665532 358899999954
No 154
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.31 E-value=4.3e-08 Score=95.43 Aligned_cols=88 Identities=19% Similarity=0.166 Sum_probs=55.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH 103 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~ 103 (350)
..++|+|..|+|||||+|.|++.... .+++|++|..+....+.+.+. ..+.++|+||......
T Consensus 35 ~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~----------------~~l~liDTpG~~d~~~ 98 (423)
T 3qq5_A 35 RYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI----------------GPVTLVDTPGLDDVGE 98 (423)
T ss_dssp EEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT----------------EEEEEEECSSTTCCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC----------------CeEEEEECcCCCcccc
Confidence 58999999999999999999998764 478999999999888887652 1588999999876443
Q ss_pred cCccccchHHHHHHHHHHHHHHHhh
Q 018809 104 EGQGLGNSFLSHIRAVDGIFHVLRA 128 (350)
Q Consensus 104 ~~~~~~~~~l~~l~~~d~~l~vv~a 128 (350)
.+.....+....++.+|+++.|+|+
T Consensus 99 l~~~~~~~~~~~l~~aD~vllVvD~ 123 (423)
T 3qq5_A 99 LGRLRVEKARRVFYRADCGILVTDS 123 (423)
T ss_dssp TCCCCHHHHHHHHTSCSEEEEECSS
T ss_pred hhHHHHHHHHHHHhcCCEEEEEEeC
Confidence 3322233344455556666665554
No 155
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.30 E-value=1.8e-07 Score=77.76 Aligned_cols=60 Identities=25% Similarity=0.298 Sum_probs=40.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+++++|++|+|||||+|.+++........|..+.......+.+++. ...+.++|+||..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~ 65 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDE---------------DVRLMLWDTAGQE 65 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTE---------------EEEEEEECCTTGG
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCE---------------EEEEEEEcCCCcH
Confidence 57899999999999999999987543322232233333444455442 1358899999954
No 156
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.30 E-value=2.7e-07 Score=78.30 Aligned_cols=59 Identities=29% Similarity=0.363 Sum_probs=42.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+++++|++|+|||||+|.|++... ..+++.|+.......+.+++.. ..+.++|+||..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~ 63 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQE 63 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC-CCCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCchheEEEEEEECCcE---------------EEEEEEECCCcH
Confidence 5799999999999999999998652 3556666655555555665532 347889999954
No 157
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.29 E-value=2.1e-07 Score=81.05 Aligned_cols=44 Identities=20% Similarity=0.225 Sum_probs=31.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCccccCCcceE
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPA--ENFPFCTIEPNEAR 65 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~--~~~p~tT~~p~~G~ 65 (350)
++|..++|+||||||||||+++|+|..... .+...||+.|..|.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~ 47 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE 47 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc
Confidence 468899999999999999999999975321 23345666777775
No 158
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.28 E-value=9.7e-07 Score=89.11 Aligned_cols=67 Identities=22% Similarity=0.146 Sum_probs=49.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
-.+|+|+|+||+|||||+|.|+|....+ ++++||...+.|...+.-. + + ......+.++||||+...
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~-~--------~-~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVP-H--------P-KKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEE-C--------S-SSTTCEEEEEEECCBCCG
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecc-c--------c-cCCCceEEEecCCCcCcc
Confidence 3678999999999999999999987655 7888888888888643100 0 0 001235889999999754
No 159
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.28 E-value=3.4e-06 Score=89.27 Aligned_cols=34 Identities=18% Similarity=0.035 Sum_probs=29.7
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
-+.++..+..|++++|+||||||||||++++.+.
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 3567777889999999999999999999998754
No 160
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.27 E-value=5.2e-07 Score=79.83 Aligned_cols=60 Identities=25% Similarity=0.394 Sum_probs=44.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
..+++|+|++|+|||||+|.|++.....+++|++|.....+.+.+.+ ..+.++|+||...
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~ 88 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL-----------------NKYQIIDTPGLLD 88 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT-----------------EEEEEEECTTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC-----------------CeEEEEECCCCcC
Confidence 46899999999999999999999876567788888877777666543 2488999999864
No 161
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.27 E-value=3.3e-07 Score=89.61 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=41.4
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcc
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~ 72 (350)
+.+ ..+.+|++++|+|+||||||||+++|+|. .+|+.|.+.+.|++
T Consensus 149 d~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~-----------~~~~~G~i~~~G~r 194 (438)
T 2dpy_A 149 NAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY-----------TRADVIVVGLIGER 194 (438)
T ss_dssp HHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHH-----------SCCSEEEEEEESCC
T ss_pred eee-EEecCCCEEEEECCCCCCHHHHHHHHhcc-----------cCCCeEEEEEecee
Confidence 345 77899999999999999999999999999 58899999999984
No 162
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.27 E-value=2.5e-07 Score=82.07 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=25.0
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
..++|+.++|+||||||||||+++|+|..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 36789999999999999999999999984
No 163
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.27 E-value=2.5e-07 Score=91.17 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=41.9
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcc
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~ 72 (350)
..+++..+..|.+++|+|+||||||||+++|+|+ ..+..|.|.+.+.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgl-----------l~~~~G~V~l~g~D 330 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQ-----------FEQQGKSVMLAAGD 330 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHH-----------HHHTTCCEEEECCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHH-----------hhhcCCeEEEecCc
Confidence 4577788999999999999999999999999998 57888999886543
No 164
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.27 E-value=2.4e-07 Score=86.20 Aligned_cols=33 Identities=30% Similarity=0.464 Sum_probs=30.8
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
++++..+++|++++|+||||||||||+++|+|.
T Consensus 117 ~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 117 KLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred ccceEEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 456788999999999999999999999999998
No 165
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.26 E-value=2.6e-07 Score=79.44 Aligned_cols=60 Identities=23% Similarity=0.312 Sum_probs=37.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
..+++|+|++|+|||||+|.|++........|..+.......+.+++.. ..++++|++|.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~ 85 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKK---------------IRLQIWDTAGQ 85 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEE---------------EEEEEEEECCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeE---------------EEEEEEeCCCc
Confidence 3579999999999999999999875433333333333334445554431 25789999994
No 166
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.26 E-value=9.2e-07 Score=74.30 Aligned_cols=61 Identities=26% Similarity=0.321 Sum_probs=44.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
-.+++++|++|+|||||+|.|++........|..|.......+.+++.. ..+.++|+||..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~ 69 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEK---------------VKLQIWDTAGQE 69 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEE---------------EEEEEEEETTGG
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEE---------------EEEEEEcCCCch
Confidence 3589999999999999999999986555556666665566666666532 357899999954
No 167
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.25 E-value=3.5e-07 Score=78.31 Aligned_cols=28 Identities=36% Similarity=0.404 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP 50 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~ 50 (350)
...+++++|++|+|||||+|.|++....
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~ 33 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFH 33 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC
Confidence 3468999999999999999999997543
No 168
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.24 E-value=4.4e-07 Score=76.32 Aligned_cols=59 Identities=24% Similarity=0.219 Sum_probs=42.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+++++|++|+|||||+|.+++... ..+++.|+.......+.+++.. ..+.++|++|..
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~ 68 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSYF-VSDYDPTIEDSYTKICSVDGIP---------------ARLDILDTAGQE 68 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CSSCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-ccccCCCcCceEEEEEEECCEE---------------EEEEEEECCCch
Confidence 5899999999999999999998732 3455555544444455555431 357899999954
No 169
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.24 E-value=4.3e-07 Score=76.59 Aligned_cols=60 Identities=22% Similarity=0.150 Sum_probs=39.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+++++|++|+|||||+|.+++........|..+.......+.+++. ...+.++|+||..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~ 72 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDA---------------TVKFEIWDTAGQE 72 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTE---------------EEEEEEEECCCSG
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCE---------------EEEEEEEeCCCCh
Confidence 58999999999999999999987543322222222222334444432 1358899999943
No 170
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.24 E-value=4.8e-07 Score=78.41 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=25.4
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
.+.+|+++||+||||||||||+++|+|..
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 46789999999999999999999999973
No 171
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.23 E-value=3.6e-07 Score=78.05 Aligned_cols=61 Identities=30% Similarity=0.315 Sum_probs=40.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
..+++|+|++|+|||||+|.|++........|..+.......+.+++. ...+.++|+||..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~ 75 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGN---------------KAKLAIWDTAGQE 75 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTE---------------EEEEEEEEECSSG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCe---------------EEEEEEEeCCCch
Confidence 468999999999999999999987543322222222233334444442 1358899999954
No 172
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.23 E-value=2.5e-07 Score=79.62 Aligned_cols=43 Identities=28% Similarity=0.217 Sum_probs=32.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC--CCCCccccCCcceEE
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPA--ENFPFCTIEPNEARV 66 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~--~~~p~tT~~p~~G~i 66 (350)
|.+++|+||||||||||+++|+|..... .....+|+.|..|.+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~ 45 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV 45 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc
Confidence 4679999999999999999999985311 234456777777764
No 173
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.23 E-value=1.7e-06 Score=78.92 Aligned_cols=61 Identities=26% Similarity=0.303 Sum_probs=48.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC-CCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRG 101 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~-~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~ 101 (350)
..+++++|.+|+|||||+|.|+|.... +++++.+|..+....+...+ ..+.++||||+...
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG-----------------FTLNIIDTPGLIEG 100 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT-----------------EEEEEEECCCSEET
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC-----------------eEEEEEECCCCCCC
Confidence 458999999999999999999998753 47888888877666555443 24899999998654
No 174
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.23 E-value=7.4e-08 Score=82.60 Aligned_cols=59 Identities=27% Similarity=0.254 Sum_probs=36.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC-C-CCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLA-I-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~-~-~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
....++++|++|+|||||+|.|++.. . ..++.|++|....... ++ ..+.++|+||+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~~------------------~~~~l~Dt~G~~~ 81 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--IN------------------DELHFVDVPGYGF 81 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--ET------------------TTEEEEECCCBCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--EC------------------CcEEEEECCCCCc
Confidence 35789999999999999999999875 2 2356666665543222 22 2489999999764
Q ss_pred c
Q 018809 101 G 101 (350)
Q Consensus 101 ~ 101 (350)
.
T Consensus 82 ~ 82 (195)
T 1svi_A 82 A 82 (195)
T ss_dssp C
T ss_pred c
Confidence 3
No 175
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.22 E-value=1.2e-06 Score=81.61 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=49.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+.+++|+|.+|+|||||+|.+++..... +++|++|+....+.+.+.+. ..+.++|+||..
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~----------------~~l~i~Dt~G~~ 63 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN----------------MTLNLWDCGGQD 63 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTT----------------EEEEEEEECCSH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCc----------------eEEEEEECCCcH
Confidence 35689999999999999999998875443 67899999998888877541 358899999964
No 176
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.22 E-value=5.3e-07 Score=75.68 Aligned_cols=59 Identities=29% Similarity=0.365 Sum_probs=38.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCcc-ccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFC-TIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~t-T~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
-.+++++|++|+|||||+|.+++..... .++.| +.......+.+++. ...+.++|++|.
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~ 74 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMA-DCPHTIGVEFGTRIIEVSGQ---------------KIKLQIWDTAGQ 74 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS-SCTTSCCCCEEEEEEEETTE---------------EEEEEEEECTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCe---------------EEEEEEEECCCC
Confidence 4689999999999999999999875422 22222 11222233444432 135789999994
No 177
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.21 E-value=5.4e-07 Score=81.00 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=25.3
Q ss_pred CCCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 11 APAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 11 ~~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+.-++++..+++|+++||+||||||||||+++|+|.
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3445788999999999999999999999999999986
No 178
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.21 E-value=4.7e-07 Score=95.76 Aligned_cols=31 Identities=32% Similarity=0.412 Sum_probs=28.4
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHH
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~ 45 (350)
.+++.+|+.|+++||+|+||||||||+++|+
T Consensus 659 k~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 659 RGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp CSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred cCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 6778899999999999999999999999853
No 179
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.21 E-value=3.6e-07 Score=96.37 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=28.4
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHH
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~ 45 (350)
.+++.+|+.|+++||+|+||||||||+++|+
T Consensus 641 k~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 641 KNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp CSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred ccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 6778899999999999999999999999854
No 180
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.20 E-value=4.1e-07 Score=77.92 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=24.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAI 49 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~ 49 (350)
..-.+++|+|++|+|||||+|.|++...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~ 50 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEF 50 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 3346899999999999999999998754
No 181
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.20 E-value=4.1e-07 Score=79.65 Aligned_cols=41 Identities=24% Similarity=0.281 Sum_probs=34.3
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC---CcceEEEeCCcc
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE---PNEARVNIPDER 72 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~---p~~G~i~~~~~~ 72 (350)
.++|+++||+||||||||||+++|+|. .. +..|.+..+|..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~-----------~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAA-----------LSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHH-----------HHHTTCCEEEEESGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH-----------HhhcCCceEEEecCCCc
Confidence 468999999999999999999999998 34 357888877643
No 182
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.20 E-value=3.2e-07 Score=78.43 Aligned_cols=61 Identities=21% Similarity=0.236 Sum_probs=38.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
-.+++|+|++|+|||||+|.|++........|..+.......+.+.+. ...+.++|++|..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~ 82 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDK---------------RIKLQIWDTAGQE 82 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTE---------------EEEEEEEECCSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCe---------------EEEEEEEeCCCcH
Confidence 468999999999999999999987543222221111112223333332 1357899999954
No 183
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.19 E-value=4.4e-07 Score=75.51 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
..+++++|++|+|||||+|.+++..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3689999999999999999999875
No 184
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.18 E-value=1.5e-06 Score=72.37 Aligned_cols=61 Identities=28% Similarity=0.219 Sum_probs=37.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
.+++++|++|+|||||+|.+++........+.+|.......+.+++.. ..+.++|++|...
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~ 63 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEE---------------VTLIVYDIWEQGD 63 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEE---------------EEEEEECCCCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeE---------------EEEEEEECCCccc
Confidence 368999999999999999999876544444555555556666666542 3578999998753
No 185
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.18 E-value=6.4e-07 Score=77.30 Aligned_cols=61 Identities=25% Similarity=0.284 Sum_probs=36.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
...+++|+|++|+|||||+|.+++........|..+.......+.+++.. ..++++|++|.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~ 87 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGER---------------TVLQLWDTAGQ 87 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEE---------------EEEEEEECTTC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEE---------------EEEEEEECCCC
Confidence 45789999999999999999999875322111211122223344444421 34889999994
No 186
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.17 E-value=1.8e-06 Score=78.69 Aligned_cols=58 Identities=28% Similarity=0.338 Sum_probs=38.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC-CCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~-~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
.+++++|.||+|||||+|.|+|... .+++.|++|.... .+.++ ..++++|+||+....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~------------------~~~~l~DtpG~~~~~ 158 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSLE------------------NGVKILDTPGILYKN 158 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEECT------------------TSCEEESSCEECCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEeC------------------CCEEEEECCCcccCc
Confidence 5899999999999999999999875 4477888887643 22222 247899999997643
No 187
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.17 E-value=6.8e-07 Score=74.19 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
.+++++|++|+|||||+|.+++..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 578999999999999999999764
No 188
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.17 E-value=6.7e-06 Score=77.96 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=37.2
Q ss_pred cccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcc----eE-EEeCCcc
Q 018809 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE----AR-VNIPDER 72 (350)
Q Consensus 18 ~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~----G~-i~~~~~~ 72 (350)
.+.+++|.+++|+|+||||||||++.+++... .+|.. |. ++++++.
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~---------~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ---------LPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTT---------SCGGGTSCSCEEEEEESSS
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc---------cchhcCCCCCeEEEEeCCC
Confidence 47899999999999999999999999999731 24554 56 7887754
No 189
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.17 E-value=5.8e-07 Score=83.71 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=35.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcch
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l 73 (350)
+|++++|+||||||||||+++|+|. ..|..|.|.+.|.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl-----------l~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY-----------YQNLGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH-----------HHTTTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH-----------HHhcCCEEEEEeecC
Confidence 6899999999999999999999999 678899998877653
No 190
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.16 E-value=2.2e-07 Score=78.23 Aligned_cols=62 Identities=23% Similarity=0.294 Sum_probs=39.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
..+++++|++|+|||||+|.+++........|..+.+.....+.+++.. ...++++|++|..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------~~~~~~~Dt~G~~ 67 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNL--------------NVTLQIWDIGGQT 67 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTE--------------EEEEEEEECTTCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCC--------------EEEEEEEECCCCc
Confidence 3679999999999999999999864321111222223334455555410 1358899999953
No 191
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.16 E-value=1.1e-06 Score=75.96 Aligned_cols=62 Identities=29% Similarity=0.268 Sum_probs=46.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.-.+++|+|++|+|||||+|.++|........|.+|.....+.+.+++.. ..+.++|++|..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~i~Dt~g~~ 83 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEE---------------VTLVVYDIWEQG 83 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEE---------------EEEEEECCCCCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEE---------------EEEEEEecCCCc
Confidence 34689999999999999999998875555556666666666777776642 347789998864
No 192
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.16 E-value=4.5e-07 Score=77.56 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=40.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
....+++++|.+|+|||||+|.+++.......+. +|.......+.+++ ..+.++|++|..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~-~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~ 78 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL-PTIGFSIEKFKSSS-----------------LSFTVFDMSGQG 78 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC-CCSSEEEEEEECSS-----------------CEEEEEEECCST
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC-CccceeEEEEEECC-----------------EEEEEEECCCCH
Confidence 4557899999999999999999998753222222 33334444444443 358899999954
No 193
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.15 E-value=9.1e-07 Score=73.32 Aligned_cols=59 Identities=25% Similarity=0.313 Sum_probs=37.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+++++|++|+|||||+|.+++.... ..++.|+.......+.+++. ...+.++|+||..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~D~~G~~ 62 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFV-EKYDPTIEDSYRKQVEVDCQ---------------QCMLEILDTAGTE 62 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEESSSC---------------EEEEEEEEECSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCCccceEEEEEEECCE---------------EEEEEEEECCChH
Confidence 47899999999999999999986422 22222222222222333322 2357899999954
No 194
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.15 E-value=1.2e-06 Score=75.00 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCccccCCcceE
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEAR 65 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~-~-~~~p~tT~~p~~G~ 65 (350)
+|..++|+||||||||||+++|++.... . ...+.+|+.|..|.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge 48 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE 48 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccc
Confidence 5789999999999999999999987431 1 34566777777664
No 195
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.14 E-value=2.2e-06 Score=74.53 Aligned_cols=62 Identities=27% Similarity=0.312 Sum_probs=42.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
..-.+++|+|++|+|||||+|.+++........|..+.+.....+.+++.. ..++++|++|.
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~ 85 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK---------------VKLQIWDTAGQ 85 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCc
Confidence 334689999999999999999999875433333333333334455555432 35889999984
No 196
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.13 E-value=6.7e-07 Score=83.35 Aligned_cols=40 Identities=33% Similarity=0.370 Sum_probs=34.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC--CcceEEEe---CCcc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE--PNEARVNI---PDER 72 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~--p~~G~i~~---~~~~ 72 (350)
..|+++||+|+||||||||+++|.|. .. |.+|.+.+ +|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~-----------l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL-----------LSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH-----------HTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH-----------HhhCCCCCeEEEEecCCcc
Confidence 78899999999999999999999997 45 78898887 6543
No 197
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.13 E-value=8.6e-07 Score=88.30 Aligned_cols=45 Identities=24% Similarity=0.346 Sum_probs=39.7
Q ss_pred cccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCc
Q 018809 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (350)
Q Consensus 16 ~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~ 71 (350)
.++..++.|..++|+||||||||||+|+|+|. ++|..|.+.+.|.
T Consensus 252 ~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~-----------i~~~~giitied~ 296 (511)
T 2oap_1 252 YLWLAIEHKFSAIVVGETASGKTTTLNAIMMF-----------IPPDAKVVSIEDT 296 (511)
T ss_dssp HHHHHHHTTCCEEEEESTTSSHHHHHHHHGGG-----------SCTTCCEEEEESS
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhh-----------CCCCCCEEEEcCc
Confidence 35556789999999999999999999999999 6889999998774
No 198
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.13 E-value=4e-06 Score=72.45 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=47.4
Q ss_pred CCccccCcCCCCcccccccccC-CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhc
Q 018809 2 PPKASKSKEAPAERPILGRFSS-HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLF 80 (350)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~-g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~ 80 (350)
+..-|-++.+|-.++....+.. ..+++++|.+|+|||||++.+++..... .+..|+.......+.+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~-------- 72 (201)
T 2gco_A 2 GSSHHHHHHSSGLVPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYIADIEVDGKQ-------- 72 (201)
T ss_dssp ------CCCCTTCCC-----CCEEEEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCCEEEEEETTEE--------
T ss_pred CcccccccccCCcccCCCCCcccceEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceEEEEEEECCEE--------
Confidence 3334556667777777777654 3589999999999999999999875432 22223222233445555431
Q ss_pred cCCCCCCcceeeeeecccc
Q 018809 81 KPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 81 ~~~~~~~~~l~~~D~~g~~ 99 (350)
..+.++|++|..
T Consensus 73 -------~~l~i~Dt~G~~ 84 (201)
T 2gco_A 73 -------VELALWDTAGQE 84 (201)
T ss_dssp -------EEEEEECCCCSG
T ss_pred -------EEEEEEECCCch
Confidence 357899999953
No 199
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.13 E-value=1.4e-06 Score=82.88 Aligned_cols=37 Identities=27% Similarity=0.179 Sum_probs=28.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccC-CcceEEEeC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE-PNEARVNIP 69 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~-p~~G~i~~~ 69 (350)
..|++++|+|+||||||||+|+|+|. .. |..|.|.+.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~-----------~~~~~~G~I~~~ 250 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGL-----------QNEILTNDVSNV 250 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCC-----------SSCCCCC-----
T ss_pred cCCCEEEEECCCCccHHHHHHHHhcc-----------ccccccCCcccc
Confidence 46899999999999999999999998 45 778887764
No 200
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.13 E-value=2.5e-06 Score=70.91 Aligned_cols=61 Identities=21% Similarity=0.219 Sum_probs=40.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
-.+++++|++|+|||||+|.+++........|..+.......+.+++. ...+.++|+||..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGK---------------RVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSC---------------EEEEEEEECCCC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCE---------------EEEEEEEECCCcH
Confidence 358999999999999999999987543333333333233344444443 2357899999953
No 201
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.12 E-value=2.5e-06 Score=71.51 Aligned_cols=59 Identities=24% Similarity=0.299 Sum_probs=38.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
..++++|++|+|||||+|.+++........|..+.......+.+++. ...+.++|+||.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~ 66 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGH---------------FVTMQIWDTAGQ 66 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTE---------------EEEEEEEECCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCE---------------EEEEEEEeCCCc
Confidence 57999999999999999999987543332333332333344445442 135889999994
No 202
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.12 E-value=1.9e-07 Score=81.66 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=24.9
Q ss_pred CCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 12 PAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 12 ~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
|..+-.......-.+|+|+|++|+|||||+|.|++..
T Consensus 13 ~~~~~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 13 GLVPRGSGDYDYLIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp --------CCSEEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred CcCcCcCCCcceeEEEEEECcCCCCHHHHHHHHhcCC
Confidence 3333333344455789999999999999999999874
No 203
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.11 E-value=4.6e-06 Score=73.21 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=29.3
Q ss_pred cccc-ccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 15 RPIL-GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 15 ~~~~-~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+.+. +.+++|+.++|+|+||||||||++.+++.
T Consensus 13 d~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 13 DKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp HGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4444 48999999999999999999999999987
No 204
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.10 E-value=1.3e-06 Score=73.97 Aligned_cols=60 Identities=23% Similarity=0.296 Sum_probs=39.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
..+++|+|++|+|||||+|.+++... ...++.|+.......+.+++.. ..+.++|++|..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~ 77 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSYLKHTEIDNQW---------------AILDVLDTAGQE 77 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCSCG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCccceeEEEEEeCCcE---------------EEEEEEECCCch
Confidence 46899999999999999999997632 2333333333333444444431 246789999954
No 205
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.10 E-value=3.3e-06 Score=71.45 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=42.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
-.+++++|++|+|||||+|.+++........|..+.......+.+++.. ..+.++|+||.
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~ 69 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKY---------------VKLQIWDTAGQ 69 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEE---------------EEEEEEEECCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEE---------------EEEEEEeCCCc
Confidence 4689999999999999999999876544444444444444455555431 35789999994
No 206
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.10 E-value=8.2e-07 Score=84.47 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAI 49 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~ 49 (350)
.++++|++|||||||+|+|+|...
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCc
Confidence 999999999999999999999754
No 207
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.10 E-value=3.6e-06 Score=71.39 Aligned_cols=54 Identities=31% Similarity=0.240 Sum_probs=41.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
+++++|++|+|||||+|.+++.....+..|++|..+.... +. .+.++|+||+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~--~~-------------------~~~l~Dt~G~~~ 56 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIE--WK-------------------NHKIIDMPGFGF 56 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEE--ET-------------------TEEEEECCCBSC
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEe--cC-------------------CEEEEECCCccc
Confidence 6899999999999999999998766677777776544322 21 378999999753
No 208
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.09 E-value=1.5e-06 Score=71.50 Aligned_cols=59 Identities=29% Similarity=0.316 Sum_probs=38.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+++++|++|+|||||+|.+++.... ..++.++.......+.+++. ...+.++|+||..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~G~~ 62 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFV-DECDPTIEDSYRKQVVIDGE---------------TCLLDILDTAGQE 62 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCc-cccCCccceEEEEEEEECCE---------------EEEEEEEECCCch
Confidence 46899999999999999999987432 23333332222333444432 1347899999953
No 209
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.08 E-value=4.2e-06 Score=70.22 Aligned_cols=61 Identities=21% Similarity=0.263 Sum_probs=38.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
-.+++++|++|+|||||+|.+++........|..+.......+.+++.. ...+.++|+||.
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~Dt~G~ 68 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDK--------------VATMQVWDTAGQ 68 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSC--------------CEEEEEECCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCc--------------EEEEEEEECCCC
Confidence 3589999999999999999999875433333444444444455544211 235789999994
No 210
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.08 E-value=1.2e-06 Score=75.11 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
...+++|+|++|+|||||+|.+++..
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34689999999999999999999875
No 211
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.08 E-value=4.5e-06 Score=71.11 Aligned_cols=60 Identities=28% Similarity=0.352 Sum_probs=41.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
-.+++++|++|+|||||+|.+++........|..+.......+.+++.. ..+.++|++|.
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~ 79 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGER---------------IKIQLWDTAGQ 79 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEE---------------EEEEEEECCCS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEE---------------EEEEEEECCCc
Confidence 4689999999999999999999875433333333333334445555431 35889999994
No 212
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.07 E-value=8e-07 Score=75.50 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~ 49 (350)
.+++|+|++|+|||||+|.+++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~ 36 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKF 36 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999999999999999998653
No 213
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.07 E-value=4.1e-06 Score=72.22 Aligned_cols=62 Identities=26% Similarity=0.283 Sum_probs=42.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
..+++|+|++|+|||||+|.|++........|..+.......+.+++. ...+.++|+||...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~ 69 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDR---------------LVTMQIWDTAGQER 69 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSC---------------EEEEEEEEECSSGG
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCE---------------EEEEEEEeCCCcHH
Confidence 468999999999999999999987644333333333334444555442 13588999999543
No 214
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.07 E-value=1.4e-06 Score=81.11 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=31.7
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEe---CCcc
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNI---PDER 72 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~---~~~~ 72 (350)
..+-.|.+++|+|+||||||||+|+|+ . ..|.+|.|.+ .|+.
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~-----------~~~~~G~i~~~~~~G~~ 204 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-G-----------EELRTQEVSEKTERGRH 204 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-S-----------CCCCCSCC---------
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-H-----------hhCcccccccccCCCCC
Confidence 345678999999999999999999999 7 5788888887 6654
No 215
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.07 E-value=6.4e-07 Score=92.57 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=30.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCcc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFC 57 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~t 57 (350)
+.+..++|+|.+|+|||||+|+|+|....+ ++.|.|
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T 103 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCT 103 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCc
Confidence 467899999999999999999999987654 556655
No 216
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.06 E-value=4.8e-06 Score=71.98 Aligned_cols=61 Identities=21% Similarity=0.275 Sum_probs=44.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
-.+++|+|++|+|||||+|.|++........|..+.......+.+++.. ..+.++|++|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~ 68 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKT---------------VKLQIWDTAGQE 68 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEE---------------EEEEEECCTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEeCCChH
Confidence 3589999999999999999999876544444554544445556665532 258899999954
No 217
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.06 E-value=2.4e-06 Score=87.01 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-cceEEEeCCcc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-NEARVNIPDER 72 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p-~~G~i~~~~~~ 72 (350)
.+||+|+||||||||+++|+|. ..| .+|.|.+.|..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl-----------~~P~~sG~vt~~g~~ 83 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGV-----------ALPRGSGIVTRCPLV 83 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSC-----------C-------CCCSCEE
T ss_pred eEEEECCCCChHHHHHHHHhCC-----------CCCCCCCeEEEcCEE
Confidence 3999999999999999999999 456 79999888764
No 218
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.06 E-value=7.9e-07 Score=83.65 Aligned_cols=41 Identities=22% Similarity=0.256 Sum_probs=36.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcc
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~ 72 (350)
..+|++++|+||||||||||+++|+|. ..|..|.|.+.|.+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~-----------l~~~~g~V~l~g~D 166 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANW-----------LKNHGFSVVIAASD 166 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHH-----------HHHTTCCEEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH-----------HHhcCCEEEEEeec
Confidence 367999999999999999999999998 57888998887654
No 219
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.06 E-value=2.3e-06 Score=74.57 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=39.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCccccCCcceEEEeCCc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEARVNIPDE 71 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~-~-~~~p~tT~~p~~G~i~~~~~ 71 (350)
-.|..++|+||+|||||||++.|.+.... . ...+.||++|..|. ++|.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~ 66 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGK 66 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTS
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccc
Confidence 47899999999999999999999987542 2 56778999999887 4554
No 220
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.05 E-value=9.4e-07 Score=75.26 Aligned_cols=29 Identities=28% Similarity=0.227 Sum_probs=26.3
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..+..|..++|+||||+|||||++++++.
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999999999987
No 221
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.04 E-value=1.4e-06 Score=73.28 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=38.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
..+++++|.+|+|||||++.+++..... +..|+.......+.+++. ...+.++|++|..
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~ 65 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQ---------------THLVLIREEAGAP 65 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTE---------------EEEEEEEECSSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCE---------------EEEEEEEECCCCc
Confidence 3689999999999999999999875322 222222222233444442 1347899999854
No 222
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.04 E-value=1.6e-06 Score=87.10 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=31.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCC---CCCCCcccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIP---AENFPFCTI 59 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~---~~~~p~tT~ 59 (350)
..--.++|+|.+|+|||||+|.|+|.... +++.|+||.
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~ 103 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDC 103 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccce
Confidence 34468999999999999999999999864 577887754
No 223
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.03 E-value=1e-06 Score=80.95 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAI 49 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~ 49 (350)
.-+++++|.+|||||||+|+|+|...
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCCc
Confidence 35899999999999999999999865
No 224
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.03 E-value=1.3e-06 Score=81.55 Aligned_cols=27 Identities=37% Similarity=0.413 Sum_probs=26.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+..|+++||+|+||||||||+++|+|.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 789999999999999999999999998
No 225
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.03 E-value=2.4e-06 Score=70.93 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
..+++++|++|+|||||+|.+++..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999999864
No 226
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.02 E-value=8.3e-07 Score=75.33 Aligned_cols=59 Identities=29% Similarity=0.344 Sum_probs=38.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
....+++++|.+|+|||||+|.+++.... ....|.......+.+.+ ..+.++|++|...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~ 77 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVINN-----------------TRFLMWDIGGQES 77 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCE---EEECCSSSSCEEEEETT-----------------EEEEEEEESSSGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCC---ccCCcCceeeEEEEECC-----------------EEEEEEECCCCHh
Confidence 34578999999999999999999987431 01112222233444432 3588999999743
No 227
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.02 E-value=3.4e-06 Score=73.83 Aligned_cols=44 Identities=25% Similarity=0.221 Sum_probs=34.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCccccCCcceE
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEAR 65 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~-~-~~~p~tT~~p~~G~ 65 (350)
++|..++|+||||||||||++.|++.... . ...+.+|.+|..|.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e 51 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGE 51 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcc
Confidence 57899999999999999999999998542 2 34566777776663
No 228
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.01 E-value=1.2e-06 Score=74.64 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
...+++++|++|||||||++.+++..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999999873
No 229
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.01 E-value=5.2e-06 Score=88.98 Aligned_cols=32 Identities=28% Similarity=0.209 Sum_probs=27.1
Q ss_pred ccccccccC-------CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 15 RPILGRFSS-------HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 15 ~~~~~~i~~-------g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+.++..+.. |++++|+||||+|||||++++ |+
T Consensus 773 ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 773 NDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp EEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HH
T ss_pred eeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HH
Confidence 445555655 899999999999999999999 87
No 230
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.00 E-value=4.8e-06 Score=71.90 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=38.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
..-.+++|+|++|+|||||+|.|++........|..+.......+.+++.. ..+.++|++|..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~ 85 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKT---------------VKLQIWDTAGQE 85 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEE---------------EEEEEECCTTHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCee---------------eEEEEEcCCCcH
Confidence 334689999999999999999999876444434444444444455555431 358899999954
No 231
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.00 E-value=1.4e-06 Score=75.55 Aligned_cols=60 Identities=22% Similarity=0.262 Sum_probs=36.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
-.+++|+|++|+|||||++.+++........|..+.......+.+++. ...+.++|++|.
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~ 88 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGK---------------RVKLQIWDTAGQ 88 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTE---------------EEEEEEECCTTC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCE---------------EEEEEEEECCCc
Confidence 358999999999999999999987532211111112222334444432 135889999985
No 232
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.00 E-value=3.5e-06 Score=72.91 Aligned_cols=29 Identities=24% Similarity=0.213 Sum_probs=25.6
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
.+.+|++++|+|+|||||||++++|.+..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999999999999999999984
No 233
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.00 E-value=2.9e-06 Score=70.49 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+|+.++|+|+||+|||||++++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999999997
No 234
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.00 E-value=1.7e-06 Score=73.65 Aligned_cols=59 Identities=27% Similarity=0.333 Sum_probs=38.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
+...+++++|++|+|||||+|.+++.... . ...|.......+.+.+ ..+.++|++|...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~ 72 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-H--TSPTIGSNVEEIVINN-----------------TRFLMWDIGGQES 72 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-E--EECCSCSSCEEEEETT-----------------EEEEEEECCC---
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-c--CcCCCccceEEEEECC-----------------EEEEEEECCCCHh
Confidence 34578999999999999999999976421 1 1112333334444433 3588999999743
No 235
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.99 E-value=9e-07 Score=84.40 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=29.2
Q ss_pred cccccccC--CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 16 PILGRFSS--HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 16 ~~~~~i~~--g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+...+.+ |++++|+|+||||||||+++|+|.
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHH
Confidence 35667788 999999999999999999999999
No 236
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.98 E-value=8.3e-06 Score=68.43 Aligned_cols=61 Identities=23% Similarity=0.257 Sum_probs=40.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCC-CCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAE-NFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~-~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
..+++++|++|+|||||+|.+++...... ..|.++.......+.+++. ...+.++|+||..
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~~~Dt~G~~ 71 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGV---------------KVKLQMWDTAGQE 71 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTE---------------EEEEEEEECCCC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCE---------------EEEEEEEeCCCcH
Confidence 46899999999999999999998765332 2233333333333445543 1357899999953
No 237
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.98 E-value=6.2e-06 Score=68.27 Aligned_cols=58 Identities=24% Similarity=0.218 Sum_probs=33.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
.+++++|++|+|||||+|.++|..... ++.+++|.. ..+.+++. ...+.++|++|...
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~---------------~~~~~i~D~~g~~~ 61 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGE---------------EASLMVYDIWEQDG 61 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTE---------------EEEEEEEECC----
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCE---------------EEEEEEEECCCCcc
Confidence 578999999999999999999876432 444444442 23344443 23578999998543
No 238
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.98 E-value=8.2e-06 Score=68.04 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=36.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+++|+|++|+|||||+|.+++..... .+.+++| .....+.+++.. ..+.++|++|..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------------~~~~~~D~~g~~ 63 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED--VYERTLTVDGED---------------TTLVVVDTWEAE 63 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS--EEEEEEEETTEE---------------EEEEEECCC---
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCccccc--eeEEEEEECCEE---------------EEEEEEecCCCC
Confidence 579999999999999999999876432 2222222 234455555532 247899999864
No 239
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.22 E-value=9.7e-07 Score=76.40 Aligned_cols=84 Identities=20% Similarity=0.179 Sum_probs=51.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGA 102 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~ 102 (350)
...+++++|.+|+|||||++.+++... ...++.|+.......+.+++. ...++++|++|.....
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~ 92 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGQEDYD 92 (204)
Confidence 457899999999999999999987532 122333332222222333221 1246799999964322
Q ss_pred ccCccccchHHHHHHHHHHHHHHHhhc
Q 018809 103 HEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 103 ~~~~~~~~~~l~~l~~~d~~l~vv~a~ 129 (350)
. .....++.+|+++.|+|+.
T Consensus 93 ~-------~~~~~~~~~d~iilv~D~~ 112 (204)
T 3th5_A 93 R-------LRPLSYPQTDVFLICFSLV 112 (204)
Confidence 1 1123456788888887763
No 240
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.96 E-value=5.9e-06 Score=71.06 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=40.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+++|+|.+|+|||||+|.++|..... ++++.++.......+.++|.. ..+.++|++|..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~Dt~~~~ 67 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGES---------------ATIILLDMWENK 67 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEE---------------EEEEEECCCCC-
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeE---------------EEEEEEEeccCc
Confidence 579999999999999999999854433 445544444444556666542 246788998754
No 241
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.96 E-value=4.1e-06 Score=87.59 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=27.8
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+.++.. ..|++++|+||||+|||||+++++|.
T Consensus 599 ndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 599 NPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp EEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 445555 78999999999999999999999986
No 242
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.95 E-value=1.9e-06 Score=85.41 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=43.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
...+++|+|.+|+|||||+|.|++... .. .++|+..+.+.+.+.+ ..+.++|++|..
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~-~~--~~~T~~~~~~~~~~~~-----------------~~~~l~Dt~G~~ 377 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQS-VT--TIPTVGFNVETVTYKN-----------------VKFNVWDVGGQD 377 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSC-CC--CCCCSSEEEEEEESSS-----------------CEEEEEEECCCG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCC-CC--cCCccceeEEEEEeCC-----------------EEEEEEECCCcH
Confidence 446899999999999999999998762 22 3346666666666543 358999999943
No 243
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.95 E-value=3.5e-06 Score=73.43 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=24.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.++|+++||+|+||||||||+++|+|.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999997
No 244
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.94 E-value=1.5e-06 Score=86.07 Aligned_cols=59 Identities=25% Similarity=0.375 Sum_probs=36.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC-------CCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeec
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLA-------IPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~-------~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~ 96 (350)
...++++|.+|+|||||++.|+|.. ......++.|+......+.+++ ..++++|+|
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-----------------~~i~iiDtP 81 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN-----------------YRITLVDAP 81 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT-----------------EEEEECCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC-----------------EEEEEEECC
Confidence 3689999999999999999999976 1223445556655555554443 247899999
Q ss_pred ccc
Q 018809 97 GLV 99 (350)
Q Consensus 97 g~~ 99 (350)
|..
T Consensus 82 Gh~ 84 (482)
T 1wb1_A 82 GHA 84 (482)
T ss_dssp SHH
T ss_pred ChH
Confidence 963
No 245
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.93 E-value=8.1e-06 Score=70.16 Aligned_cols=64 Identities=22% Similarity=0.203 Sum_probs=39.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
.....+++++|++|+|||||++.+++.. -..+++.|+.......+.+++.. ..+.++|++|...
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~ 80 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGRP---------------VRLQLCDTAGQDE 80 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEE---------------EEEEEEECCCSTT
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECCEE---------------EEEEEEECCCCHH
Confidence 3456789999999999999999999875 23455555544444455555431 2478999999754
No 246
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.93 E-value=1.4e-05 Score=68.43 Aligned_cols=57 Identities=26% Similarity=0.415 Sum_probs=42.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
..+++++|++|+|||||++.+++.... .+ ..|..+..+.+.+++ ..+.++|++|...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~ 79 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGN-----------------IKFTTFDLGGHIQ 79 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETT-----------------EEEEEEECCCSGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECC-----------------EEEEEEECCCCHH
Confidence 458999999999999999999986532 22 235566677777765 2478999999754
No 247
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.93 E-value=1.3e-05 Score=68.93 Aligned_cols=60 Identities=25% Similarity=0.290 Sum_probs=37.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+++|+|++|+|||||+|.|++........|..+.......+.+++. ...+.++|++|..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~ 68 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDK---------------RIKLQIWDTAGLE 68 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCSG
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCe---------------EEEEEEEECCCch
Confidence 57999999999999999999987533221121111111223333332 1357899999963
No 248
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.93 E-value=2.9e-06 Score=82.40 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=34.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~ 71 (350)
.+|..++|+||||||||||+++|+|. +.|..|.|.+.+.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~-----------l~~~~g~I~~~ed 203 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQE-----------LNSSERNILTVED 203 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHH-----------HCCTTSCEEEEES
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhh-----------cCCCCCEEEEecc
Confidence 67899999999999999999999998 6778888876553
No 249
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.92 E-value=1e-05 Score=69.90 Aligned_cols=57 Identities=25% Similarity=0.413 Sum_probs=39.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
..+++++|++|||||||++.+++.... .+ ..|..++.+.+.+++ ..+.++|++|...
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~--~~-~~t~~~~~~~~~~~~-----------------~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLG--QH-VPTLHPTSEELTIAG-----------------MTFTTFDLGGHIQ 81 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETT-----------------EEEEEEEECC---
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC--cc-CCCCCceeEEEEECC-----------------EEEEEEECCCcHh
Confidence 357899999999999999999986532 22 135556677777765 2478999999643
No 250
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.92 E-value=1e-05 Score=68.83 Aligned_cols=59 Identities=29% Similarity=0.358 Sum_probs=39.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+|+++|.+|||||||+|.|++... ...++.|+.......+.+++.. ..+.++|++|..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~ 80 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQE 80 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCC--
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC-ccccCCccceEEEEEEEECCEE---------------EEEEEEECCChH
Confidence 5899999999999999999998643 2344444433333444554421 347899999953
No 251
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.91 E-value=2e-06 Score=87.50 Aligned_cols=30 Identities=30% Similarity=0.297 Sum_probs=25.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPA 51 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~ 51 (350)
++...++|+|.+|+|||||+|.|++....+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i 194 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIV 194 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCc
Confidence 446799999999999999999999875433
No 252
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.91 E-value=2.4e-06 Score=78.82 Aligned_cols=34 Identities=15% Similarity=-0.053 Sum_probs=31.4
Q ss_pred cccccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 14 ERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 14 ~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
-+.+++.+++|+.++|+|+||+|||||++.|+|.
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3567788999999999999999999999999998
No 253
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.91 E-value=1.3e-05 Score=70.43 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=39.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
.+++|||.+|+|||||+|.++|....+ ..+|.++.......+.++|.. ..+.++|++|.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~---------------~~l~~~Dt~g~ 97 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES---------------ATIILLDMWEN 97 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEE---------------EEEEEECCTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCee---------------eEEEEeecCCC
Confidence 579999999999999999999865443 444544444334456666542 24678898763
No 254
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.91 E-value=1e-05 Score=71.02 Aligned_cols=60 Identities=28% Similarity=0.342 Sum_probs=40.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
.+++|+|++|+|||||++.|++........|..+.......+.+++.. ..+.++|++|..
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~ 73 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKR---------------IKAQIWDTAGQE 73 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEE---------------EEEEEECCTTTT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEECCCcc
Confidence 589999999999999999999876544333444444444455555431 357899999954
No 255
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.91 E-value=2.4e-06 Score=72.97 Aligned_cols=27 Identities=37% Similarity=0.390 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
.....++++|++|||||||+|.|++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999999874
No 256
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.90 E-value=8.9e-06 Score=84.65 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
|++++|+||||||||||+++++|..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 9999999999999999999999973
No 257
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.89 E-value=5.5e-06 Score=70.87 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
...++++|++|+|||||+|.|++..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCC
Confidence 4689999999999999999999864
No 258
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.88 E-value=1.6e-05 Score=66.86 Aligned_cols=60 Identities=27% Similarity=0.322 Sum_probs=40.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
.+++++|++|+|||||++.+++... ...+..|+.......+.+++. ...++++|+||...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~ 65 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGQED 65 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEEEEETTE---------------EEEEEEECCCCSGG
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeEEEEEECCE---------------EEEEEEEECCCCHh
Confidence 5799999999999999999997643 233333433333334444443 23478999999743
No 259
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.88 E-value=3.8e-07 Score=81.40 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=31.3
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcch
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l 73 (350)
..+.. ++++|+||||||||||+++|+|. ..|++|.|.++|..+
T Consensus 23 ~~~~~-~~~~i~GpnGsGKSTll~~i~g~-----------~~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 23 FDLDE-LVTTLSGGNGAGKSTTMAAFVTA-----------LIPDLTLLHFRNTTE 65 (227)
T ss_dssp ECHHH-HHHHHHSCCSHHHHHHHHHHHHH-----------HSCCTTTC-------
T ss_pred EEEcC-cEEEEECCCCCCHHHHHHHHhcc-----------cccCCCeEEECCEEc
Confidence 44555 78899999999999999999999 678889888887654
No 260
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.87 E-value=2.1e-05 Score=66.58 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=39.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
+...+++++|++|+|||||+|.+++.. ...+. .|.......+.+++ ..++++|+||..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~-~t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED--VDTIS-PTLGFNIKTLEHRG-----------------FKLNIWDVGGQK 73 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCC-CCSSEEEEEEEETT-----------------EEEEEEEECCSH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC--CCccc-ccCccceEEEEECC-----------------EEEEEEECCCCH
Confidence 456789999999999999999999875 22211 12223333444432 358899999964
No 261
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.87 E-value=0.00011 Score=68.63 Aligned_cols=31 Identities=32% Similarity=0.467 Sum_probs=26.5
Q ss_pred cccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 16 ~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+...+.+| +.+|+|+||||||||+.+|...
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 445567788 9999999999999999999854
No 262
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.86 E-value=3e-06 Score=71.57 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
..+++|+|++|+|||||++.+++........|..+.......+.+++.. ..+.++|++|..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~ 68 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQE 68 (183)
T ss_dssp EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEE---------------EEEEEEEC----
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEcCCCCh
Confidence 3689999999999999999999764322222222222233344454431 358899999954
No 263
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.86 E-value=4.3e-06 Score=80.01 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=34.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc-ceEEEeCC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNIPD 70 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~-~G~i~~~~ 70 (350)
+.+|+.++|+||||||||||+++|+|. ++|. .|.|...+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~-----------~~~~~~g~I~~~e 172 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDY-----------INQTKSYHIITIE 172 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHH-----------HHHHSCCEEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhh-----------cCcCCCcEEEEec
Confidence 688999999999999999999999998 5676 78886544
No 264
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.86 E-value=2.6e-06 Score=73.18 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
....+++++|++|+|||||++.+++..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~ 53 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGE 53 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSC
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCC
Confidence 345789999999999999999998763
No 265
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.86 E-value=1.7e-05 Score=67.71 Aligned_cols=61 Identities=18% Similarity=0.265 Sum_probs=38.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
...+++|+|.+|+|||||++.+++... ...++.|+.......+.+++. ...++++|++|..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~ 80 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYSSEETVDHQ---------------PVHLRVMDTADLD 80 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTE---------------EEEEEEEECCC--
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceeeEEEEECCE---------------EEEEEEEECCCCC
Confidence 446899999999999999999998642 233333332222223333432 1357899999964
No 266
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.85 E-value=1.4e-05 Score=69.22 Aligned_cols=60 Identities=25% Similarity=0.312 Sum_probs=37.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
..+++++|++|+|||||+|.+++.... ..+..|+.......+.+++. ...+.++|+||..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~ 84 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVADIEVDGK---------------QVELALWDTAGQE 84 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTE---------------EEEEEEEECTTCT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEEEEEECCE---------------EEEEEEEECCCcH
Confidence 458999999999999999999987532 22222222222223444432 1357899999954
No 267
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.85 E-value=1.9e-05 Score=67.20 Aligned_cols=28 Identities=25% Similarity=0.480 Sum_probs=24.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAI 49 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~ 49 (350)
+...+++|+|++|+|||||+|.+++...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~ 47 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQF 47 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4567899999999999999999998643
No 268
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.85 E-value=1.8e-05 Score=67.68 Aligned_cols=61 Identities=28% Similarity=0.315 Sum_probs=39.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
...+++++|.+|+|||||+|.+++... ...++.|+.......+.+++.. ..+.++|++|..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~ 82 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNEE---------------FILHLWDTAGQE 82 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEEECCEE---------------EEEEEEECCCcH
Confidence 346899999999999999999998753 2233333322223334444431 247899999943
No 269
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.84 E-value=1.7e-05 Score=67.46 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
.+++|+|++|||||||++.+++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999999963
No 270
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.82 E-value=1.6e-05 Score=79.45 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=28.8
Q ss_pred ccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 17 ~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+.+.+.+|++++|+|+||+|||||+++++|.
T Consensus 274 L~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 274 CGGGFFKDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp TTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred hCCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3568899999999999999999999999998
No 271
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.81 E-value=8.5e-06 Score=73.02 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCCCCccccCCcceEEEeC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLT---KLAIPAENFPFCTIEPNEARVNIP 69 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~---g~~~~~~~~p~tT~~p~~G~i~~~ 69 (350)
.+++++|+|+||||||||+++|+ |. ..++.|.+.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~-----------~~~~~G~i~~~ 64 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGL-----------QHLSSGHFLRE 64 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC-----------CCEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCC-----------eEecHHHHHHH
Confidence 46899999999999999999999 98 46677766554
No 272
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.81 E-value=3.5e-06 Score=71.73 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCc---ceEEEeCCcc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN---EARVNIPDER 72 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~---~G~i~~~~~~ 72 (350)
..++|+|++|||||||+++|+|. .+|. .|.|.+++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~-----------~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI-----------LRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH-----------HHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-----------hhhcCCceEEEEEcCcc
Confidence 57999999999999999999999 5666 7999988753
No 273
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.81 E-value=2.6e-05 Score=67.59 Aligned_cols=61 Identities=21% Similarity=0.222 Sum_probs=42.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
..+++|+|.+|+|||||++.+++... ..+++.|+.......+.+++. ...+.++|++|...
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~ 69 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGQ---------------IVNLGLWDTAGQED 69 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSSC---------------EEEEEEECCCCCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECCE---------------EEEEEEEECCCcHH
Confidence 46899999999999999999997643 234444544444444555443 13588999999743
No 274
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.80 E-value=2.9e-05 Score=66.19 Aligned_cols=60 Identities=25% Similarity=0.314 Sum_probs=42.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
.+++++|++|+|||||++.+++... ..+++.|+.......+.+++.. ..++++|++|...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~ 78 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGKQ---------------YLLGLYDTAGQED 78 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSSCE---------------EEEEEECCCCSSS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECCEE---------------EEEEEEECCCCcc
Confidence 5899999999999999999998742 2445555544444455555431 3578999999643
No 275
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.79 E-value=1e-05 Score=69.05 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=24.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
...-.+++|+|++|+|||||+|.+++..
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 3445689999999999999999999864
No 276
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.79 E-value=1.4e-05 Score=75.78 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~ 49 (350)
-.++++|.+|||||||+|+|+|...
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~~ 56 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRDF 56 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSCC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCCc
Confidence 4899999999999999999999864
No 277
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.79 E-value=4.4e-06 Score=75.46 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=30.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCCCCccccCCcceEEE
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLT---KLAIPAENFPFCTIEPNEARVN 67 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~---g~~~~~~~~p~tT~~p~~G~i~ 67 (350)
.+|++++|+|+|||||||++++|+ |. ..+++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~-----------~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNW-----------RLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTC-----------EEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCC-----------CcCCCCcee
Confidence 578999999999999999999999 88 467778776
No 278
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.79 E-value=8.6e-06 Score=69.70 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTK 46 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g 46 (350)
|++++|+||||||||||+++|++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67899999999999999999986
No 279
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.78 E-value=3.1e-05 Score=63.85 Aligned_cols=54 Identities=30% Similarity=0.395 Sum_probs=35.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
+++++|++|+|||||+|.+++.... ...| |.......+...+ ..+.++|++|..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~ 55 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQD 55 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSS-----------------CEEEEEECCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECC-----------------EEEEEEEcCCCh
Confidence 6899999999999999999876421 1112 3333333333322 358899999963
No 280
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.77 E-value=2.2e-05 Score=68.54 Aligned_cols=60 Identities=25% Similarity=0.369 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
..+++++|++|+|||||++.+++.... ..++.|+.......+.+++.. ..+.++|++|..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~ 93 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKP---------------VHLHIWDTAGQD 93 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEE---------------EEEEEEEC----
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECCEE---------------EEEEEEECCCch
Confidence 368999999999999999999986431 233333332223344444431 357899999953
No 281
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.77 E-value=2.5e-05 Score=67.57 Aligned_cols=62 Identities=27% Similarity=0.342 Sum_probs=40.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
....+++++|.+|+|||||++.+++... ...++.|+.......+.+++. ...+.++|++|..
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~ 89 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGLE 89 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-C---------------EEEEEEEEECCSG
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECCE---------------EEEEEEEECCCch
Confidence 3457999999999999999999997532 234444444333344444443 2346799999974
No 282
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.77 E-value=4.1e-05 Score=63.47 Aligned_cols=59 Identities=25% Similarity=0.373 Sum_probs=38.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
+...+++++|++|+|||||+|.+++.... .. ..|.......+.+.+ ..+.++|+||...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~ 63 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TT--IPTIGFNVETVTYKN-----------------LKFQVWDLGGLTS 63 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CC--CCCSSEEEEEEEETT-----------------EEEEEEEECCCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-Cc--CCcCccceEEEEECC-----------------EEEEEEECCCChh
Confidence 44578999999999999999999876421 11 112222223333332 3588999999643
No 283
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.77 E-value=1.2e-05 Score=69.76 Aligned_cols=26 Identities=15% Similarity=0.334 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
++|++++|+|+|||||||++++|++.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 56899999999999999999999987
No 284
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.77 E-value=6.9e-06 Score=77.89 Aligned_cols=26 Identities=31% Similarity=0.635 Sum_probs=23.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+.+.+++|+|+||||||||+|+|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999984
No 285
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.76 E-value=2.9e-05 Score=65.78 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
.+++++|++|+|||||+|.+++..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 578999999999999999999864
No 286
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.76 E-value=1.9e-05 Score=69.90 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=36.1
Q ss_pred cccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC-----cceEEEeCCcc
Q 018809 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-----NEARVNIPDER 72 (350)
Q Consensus 18 ~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p-----~~G~i~~~~~~ 72 (350)
.+.+++|+.++|+||||||||||++.|++... ..| ..|.+++.++.
T Consensus 18 ~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---------~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 18 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQ---------LPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHHTT---------SCGGGTCCSSEEEEEESSS
T ss_pred cCCCcCCeEEEEECCCCCcHHHHHHHHHHHHh---------CchhcCCCCCeEEEEECCC
Confidence 36799999999999999999999999998311 222 46778876654
No 287
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.76 E-value=3e-06 Score=84.88 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=22.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
....+++|+|.+|||||||+|.+++..
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC--
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCC
Confidence 345789999999999999999999875
No 288
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.76 E-value=1.3e-05 Score=68.01 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=27.9
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..+...+.+| ..+|+|+||||||||+.+|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 4566777888 8999999999999999999876
No 289
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.75 E-value=1.6e-05 Score=66.84 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
..+++++|++|+|||||++.+++..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999999764
No 290
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.74 E-value=9.5e-06 Score=79.31 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
+....++++|.+|+|||||++.|++..
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~ 41 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLT 41 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHc
Confidence 345789999999999999999997653
No 291
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.74 E-value=1.6e-05 Score=67.01 Aligned_cols=59 Identities=25% Similarity=0.321 Sum_probs=36.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
+...+++++|++|||||||+|.+++.... . ...|.......+.+++ ..+.++|++|...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~--~-~~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~ 74 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVV--T-TKPTIGFNVETLSYKN-----------------LKLNVWDLGGQTS 74 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEE--E-ECSSTTCCEEEEEETT-----------------EEEEEEEEC----
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcC--c-cCCcCccceEEEEECC-----------------EEEEEEECCCCHh
Confidence 35679999999999999999999975421 0 0112222233344432 3588999999754
No 292
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.74 E-value=1.9e-06 Score=74.30 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=44.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
-.+|+|+|++|+|||||+|.|++........|.+|.......+.+++.. ..+.++|++|..
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~ 93 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQE 93 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEE---------------EEEEEECCTTCT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEE---------------EEEEEEECCCcH
Confidence 4689999999999999999999875444444555555555666666532 257899999954
No 293
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.69 E-value=4e-05 Score=66.57 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAI 49 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~ 49 (350)
..+++++|++|+|||||+|.+++...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999998743
No 294
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.69 E-value=1.4e-05 Score=68.62 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
...++.++|.+|+|||||++.+++..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcC
Confidence 45689999999999999999999863
No 295
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.68 E-value=3.8e-06 Score=73.28 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
..+++|+|.+|||||||+|.|++..
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999999764
No 296
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.68 E-value=6.5e-05 Score=65.12 Aligned_cols=59 Identities=24% Similarity=0.260 Sum_probs=39.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
..+++++|++|+|||||++.+++... ..+++.++ .....+.+++.. ...++++|+||..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~~~--~~~~~~~~~~~~--------------~~~~~i~Dt~G~~ 65 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSIT--DSSAIYKVNNNR--------------GNSLTLIDLPGHE 65 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCCCS--CEEEEEECSSTT--------------CCEEEEEECCCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCcc--eeeEEEEecCCC--------------ccEEEEEECCCCh
Confidence 46899999999999999999998642 23344222 333445554321 1358999999964
No 297
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.67 E-value=5e-06 Score=78.13 Aligned_cols=56 Identities=29% Similarity=0.429 Sum_probs=36.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGL 98 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~ 98 (350)
...+|+|+|.+|+|||||++.+++... ...+| |+......+...+ ..++++|++|.
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~p--T~~~~~~~~~~~~-----------------~~l~i~Dt~G~ 219 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQ 219 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCC-EEEEE--ETTEEEEEEEETT-----------------EEEEEEECC--
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCC-CCccc--ccceEEEEEecCc-----------------EEEEEEECCCC
Confidence 345899999999999999999998642 11222 3333333333332 35889999993
No 298
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.67 E-value=7.5e-06 Score=81.01 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+..+++++|.+|+|||||++.|++.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999865
No 299
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.66 E-value=5.3e-05 Score=73.94 Aligned_cols=71 Identities=10% Similarity=0.103 Sum_probs=45.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC---------------CCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL---------------AIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAF 89 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~---------------~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~ 89 (350)
.+|+|+|++++|||||+|.|.|. ...+-....||...+.|.+.+...-. ......-..+
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~------~~~~~~~~~~ 141 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFL------INKPDGKKVA 141 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEE------EECSSSCEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccc------cccCCCCcce
Confidence 57889999999999999999975 23332223377777888876532100 0000011245
Q ss_pred eeeeeecccccc
Q 018809 90 LEIHDIAGLVRG 101 (350)
Q Consensus 90 l~~~D~~g~~~~ 101 (350)
+.++||+|+...
T Consensus 142 vvllDTeG~~~~ 153 (447)
T 3q5d_A 142 VLLMDTQGTFDS 153 (447)
T ss_dssp EEEEEEECCCSS
T ss_pred EEEEcCCccccc
Confidence 889999998654
No 300
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.66 E-value=2.1e-05 Score=68.03 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=23.9
Q ss_pred CCCCcccccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 10 ~~~~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..+..+.++..+.+|..++|+|+|||||||+.+.|++.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34566889999999999999999999999999999975
No 301
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=97.66 E-value=2.1e-05 Score=57.79 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=34.0
Q ss_pred ceeeccCCCCeeeeecCCCCChhhhhhccccccccCeeEEEEE
Q 018809 305 IYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVV 347 (350)
Q Consensus 305 i~~ft~~~~e~~a~~~~~gsta~~~A~~IHsd~~~~fi~A~v~ 347 (350)
|.+|| |+ -+...+++|+|+.|+|..||+|+++.++.|+|-
T Consensus 8 i~v~t--P~-G~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVN 47 (78)
T 3hvz_A 8 VFVFT--PK-GDVISLPIGSTVIDFAYAIHSAVGNRMIGAKVD 47 (78)
T ss_dssp EEEEC--TT-SCEEEEETTCBHHHHHHHHCHHHHHTEEEEEET
T ss_pred EEEEC--CC-CCEEEecCCCCHHHHHHHhhhhhhcceEEEEEC
Confidence 55666 33 266789999999999999999999999999883
No 302
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.65 E-value=5.6e-05 Score=64.42 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIP 50 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~ 50 (350)
....+++|+|.+|+|||||++.+++....
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~ 43 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSS 43 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCc
Confidence 44568999999999999999999987543
No 303
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.65 E-value=3.9e-06 Score=85.09 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
...++|+|.+|+|||||++.|++.
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~ 200 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFE 200 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHH
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHH
Confidence 347999999999999999999754
No 304
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.65 E-value=2.8e-06 Score=74.53 Aligned_cols=60 Identities=22% Similarity=0.206 Sum_probs=37.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHH-HHcCCCCC-CCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNT-LTKLAIPA-ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~-L~g~~~~~-~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
...+++++|.+|||||||+|. +.|..... .+.+++|..... +.+.+. ...+.++|++|..
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~---------------~~~~~i~Dt~G~~ 75 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV--FHTNRG---------------PIKFNVWDTAGQE 75 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEE--EEETTE---------------EEEEEEEEECSGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEE--EEECCE---------------EEEEEEEeCCChH
Confidence 346899999999999999999 55543222 334443333222 222222 1357899999953
No 305
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.64 E-value=1.6e-05 Score=68.28 Aligned_cols=65 Identities=31% Similarity=0.405 Sum_probs=21.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CCCCccc-cCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPA-ENFPFCT-IEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~-~~~p~tT-~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
....+++++|++|+|||||++.+++..... ..++.|+ .+.....+.+++.. ....+.++|++|..
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-------------~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTT-------------VSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSS-------------EEEEEEEEETTTTH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcc-------------cEEEEEEEECCCcH
Confidence 345689999999999999999999873322 3333333 23445556655420 01258899999863
No 306
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.64 E-value=1.1e-05 Score=83.29 Aligned_cols=81 Identities=22% Similarity=0.160 Sum_probs=49.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc---CCCC---------CCC------CCccccCCcceEEEeCCcchhHHHhhccCCCCC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTK---LAIP---------AEN------FPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g---~~~~---------~~~------~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~ 86 (350)
..++|+|.+|+|||||+|.|++ .... ..+ .+++|+....+.+.+.+
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~---------------- 74 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG---------------- 74 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC----------------
Confidence 5799999999999999999994 2110 011 24455555555555443
Q ss_pred CcceeeeeecccccccccCccccchHHHHHHHHHHHHHHHhhc
Q 018809 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 87 ~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~ 129 (350)
..+.++|+||.... .......++.+|.++.|+|+.
T Consensus 75 -~~i~liDTPG~~df-------~~~~~~~l~~aD~~llVvDa~ 109 (693)
T 2xex_A 75 -HRVNIIDTPGHVDF-------TVEVERSLRVLDGAVTVLDAQ 109 (693)
T ss_dssp -EEEEEECCCCCSSC-------CHHHHHHHHHCSEEEEEEETT
T ss_pred -eeEEEEECcCCcch-------HHHHHHHHHHCCEEEEEECCC
Confidence 35889999998542 233455667777777766653
No 307
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.63 E-value=5.4e-05 Score=66.09 Aligned_cols=62 Identities=23% Similarity=0.319 Sum_probs=37.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
....+++|+|.+|+|||||++.+++.... ..+..|+.......+.+++. ...+.++|++|..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~ 86 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQ---------------RVELSLWDTSGSP 86 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--C---------------EEEEEEEEECCSG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECCE---------------EEEEEEEECCCCH
Confidence 44579999999999999999999986432 22222221111222333332 2357899999864
No 308
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.63 E-value=1.6e-05 Score=69.05 Aligned_cols=27 Identities=41% Similarity=0.593 Sum_probs=25.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
...|.+++|+|+||||||||+++|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999999999987
No 309
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.63 E-value=1.8e-05 Score=70.23 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=26.1
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
....+|++++|+|+|||||||++++|.+.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34578999999999999999999999985
No 310
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.62 E-value=2.8e-05 Score=71.11 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=24.5
Q ss_pred cccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 18 ~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
...++.| ++|+||||+|||||+++|+|.
T Consensus 40 ~l~~~~G--vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 40 GLVTPAG--VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp TCCCCSE--EEEESSTTSCHHHHHHHHHHH
T ss_pred CCCCCCe--EEEECCCCCcHHHHHHHHHHH
Confidence 4456667 999999999999999999997
No 311
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.61 E-value=2.4e-05 Score=65.63 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
++..++|+|+|||||||+.++|.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999986
No 312
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.59 E-value=3e-05 Score=67.11 Aligned_cols=28 Identities=32% Similarity=0.314 Sum_probs=25.9
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
...+|++++|+|+|||||||+.++|.+.
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999987
No 313
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.58 E-value=2.2e-05 Score=74.76 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~ 49 (350)
..++|+|++|+|||||+|.|.+...
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 4689999999999999999998753
No 314
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.58 E-value=2.4e-05 Score=68.08 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
...+.++|++|+|||||++.|++..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999999875
No 315
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.57 E-value=3.3e-05 Score=65.04 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=23.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+|.+++|+|+|||||||+.++|.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 45789999999999999999999975
No 316
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.56 E-value=1.5e-05 Score=74.49 Aligned_cols=44 Identities=20% Similarity=0.325 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~ 71 (350)
.+++|+|+||||||||+|.|+|... .+-..-+.|..|.+.++|.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~---~~~~aVi~~d~G~i~idg~ 48 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQH---GYKIAVIENEFGEVSVDDQ 48 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCC---CCCEEEECSSCCSCCEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcC---CCcEEEEEecCcccCccHH
Confidence 5789999999999999999999731 0000112456676666543
No 317
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.54 E-value=2.4e-05 Score=81.00 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP 61 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p 61 (350)
-.|+++|.+|+|||||+|+|+|...-...-..+|+.|
T Consensus 52 p~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~P 88 (772)
T 3zvr_A 52 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRP 88 (772)
T ss_dssp SEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccc
Confidence 4899999999999999999999865332223456555
No 318
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.51 E-value=4.5e-05 Score=69.62 Aligned_cols=35 Identities=20% Similarity=0.089 Sum_probs=30.4
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.-+.+.+.+++|+.++|+|+||+|||||++.+++.
T Consensus 19 ~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 19 PLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp CCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34556678999999999999999999999999974
No 319
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.49 E-value=5.9e-05 Score=65.45 Aligned_cols=33 Identities=39% Similarity=0.502 Sum_probs=28.4
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..+...+.+|.+++|+|+|||||||+.+.|.+.
T Consensus 12 ~~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 12 SGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp --CCCCSCCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccccccCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345557889999999999999999999999987
No 320
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.48 E-value=5.4e-05 Score=77.75 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=25.1
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+..+.+++|+|++|+|||||++.|++.
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~ 32 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYK 32 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHh
Confidence 4677899999999999999999999975
No 321
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.48 E-value=8.2e-05 Score=63.06 Aligned_cols=58 Identities=21% Similarity=0.395 Sum_probs=38.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
+..+++++|++|+|||||+|.+++.... ...| |.......+.+.+ ..+.++|+||...
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~ 78 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKN-----------------ISFEVWDLGGQTG 78 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETT-----------------EEEEEEEECCSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECC-----------------EEEEEEECCCCHh
Confidence 5678999999999999999999865321 1111 2223333344432 3588999999754
No 322
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.46 E-value=6.8e-06 Score=82.16 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTK 46 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g 46 (350)
..--.++|+|.+|||||||++.|++
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~ 35 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLL 35 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHH
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHh
Confidence 3445899999999999999999973
No 323
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.46 E-value=0.00013 Score=67.50 Aligned_cols=64 Identities=27% Similarity=0.310 Sum_probs=44.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
.+...+++++|.+|+|||||++.+++... ...++.||.......+.+++. ...+.++|++|...
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~ 215 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGLED 215 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTE---------------EEEEEEEEECCCGG
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCE---------------EEEEEEEeCCCchh
Confidence 45667899999999999999999997642 234455554444444455543 23467999999643
No 324
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.45 E-value=2.8e-05 Score=77.76 Aligned_cols=61 Identities=23% Similarity=0.242 Sum_probs=46.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLV 99 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~ 99 (350)
+.-+++++|.+|+|||||++.|++........|++|.+.....+.+++ ...++++|+||..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~----------------g~~i~~iDTPGhe 63 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS----------------GEKITFLDTPGHA 63 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC----------------SSCCBCEECSSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC----------------CCEEEEEECCChH
Confidence 345789999999999999999998765556677777776665555432 1247899999964
No 325
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.43 E-value=7.2e-05 Score=65.04 Aligned_cols=28 Identities=25% Similarity=0.248 Sum_probs=26.7
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHc
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g 46 (350)
+.+++|+.++|+|+||+|||||++.+++
T Consensus 15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 15 GGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999999999997
No 326
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.41 E-value=4.7e-05 Score=71.82 Aligned_cols=31 Identities=32% Similarity=0.642 Sum_probs=26.9
Q ss_pred ccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 17 ~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
++..+..+.+++|+|+||+|||||+|.|++.
T Consensus 49 l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 49 IMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3455778999999999999999999999854
No 327
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.39 E-value=5.7e-05 Score=65.52 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=32.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCccccCCcceE
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEAR 65 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~~~~-~-~~~p~tT~~p~~G~ 65 (350)
..+|..++|+|+|||||||+.+.|...... . -..+.||++|..|.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e 55 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKE 55 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCC
Confidence 567889999999999999999999875321 1 12345677766554
No 328
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.39 E-value=5.3e-05 Score=76.02 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=34.3
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcce-EEE-eCCc
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA-RVN-IPDE 71 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G-~i~-~~~~ 71 (350)
.+.+|++++|+|+||||||||+++|++. ..|..| .+. +++.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~-----------L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAAR-----------LMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHH-----------HHTTCSSCEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHh-----------hcccCCceEEEECCc
Confidence 4678999999999999999999999998 567776 554 6654
No 329
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.37 E-value=6.3e-05 Score=71.95 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=28.8
Q ss_pred cccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 16 ~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.++..+++|..++|+||||+|||||+++|+|.
T Consensus 161 ~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 161 CMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 34567899999999999999999999999985
No 330
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.36 E-value=6e-05 Score=72.67 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
+..+++++|.+|+|||||+|+|+|..
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~ 32 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIW 32 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc
Confidence 34789999999999999999999964
No 331
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.36 E-value=3.9e-05 Score=76.69 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=23.6
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
......++|+|.+|+|||||++.|++.
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~ 36 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLLF 36 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHhh
Confidence 445578999999999999999999975
No 332
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.31 E-value=8e-05 Score=64.16 Aligned_cols=40 Identities=30% Similarity=0.230 Sum_probs=32.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCC-C-CCCCccccCCcceEE
Q 018809 27 IGIVGLPNVGKSTLFNTLTKLAIP-A-ENFPFCTIEPNEARV 66 (350)
Q Consensus 27 igliG~ngaGKSTL~n~L~g~~~~-~-~~~p~tT~~p~~G~i 66 (350)
+.|+||+|||||||++.|...... . -..+.||++|..|.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~ 45 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV 45 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc
Confidence 689999999999999999865432 2 467889999998864
No 333
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.31 E-value=9.6e-05 Score=70.39 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=24.7
Q ss_pred ccccccCCcEEEEEcCCCCcHHHHHHHHH
Q 018809 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (350)
Q Consensus 17 ~~~~i~~g~~igliG~ngaGKSTL~n~L~ 45 (350)
+...+..| .++|+|||||||||||++|+
T Consensus 17 ~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 17 VDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45677788 78899999999999999998
No 334
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.30 E-value=0.00012 Score=64.10 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+.+++|+|+|||||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999875
No 335
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.29 E-value=8.1e-05 Score=69.17 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=35.7
Q ss_pred cccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCc
Q 018809 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71 (350)
Q Consensus 16 ~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~ 71 (350)
+++....++.+++|+|+|||||||++..|++. ..+..|.+.+.+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~-----------l~~~g~kV~lv~~ 140 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKM-----------FVDEGKSVVLAAA 140 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHH-----------HHHTTCCEEEEEE
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHH-----------HHhcCCEEEEEcc
Confidence 44445678899999999999999999999998 4566677766543
No 336
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.28 E-value=9.8e-05 Score=76.16 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTK 46 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g 46 (350)
--.++|+|.+|+|||||++.|+.
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~ 34 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILY 34 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 337
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.27 E-value=0.00012 Score=68.53 Aligned_cols=23 Identities=48% Similarity=0.534 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.++||+|+||||||||+++|.+.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999987
No 338
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.26 E-value=3.8e-05 Score=73.34 Aligned_cols=70 Identities=13% Similarity=0.137 Sum_probs=42.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeecccccccccC
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEG 105 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~~~~~~ 105 (350)
.++++|.+|+|||||++.|+. .+.|+......+..++ ..++++|+||..+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~~--------~giTi~~~~~~~~~~~-----------------~~i~iiDtPGh~~f---- 73 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLGK--------KGTSSDITMYNNDKEG-----------------RNMVFVDAHSYPKT---- 73 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTSE--------EEEESSSEEEEECSSS-----------------SEEEEEECTTTTTC----
T ss_pred EEEEECCCCCCHHHHHHHHHh--------CCEEEEeeEEEEecCC-----------------eEEEEEECCChHHH----
Confidence 899999999999999999982 2234443332222221 35899999996432
Q ss_pred ccccchHHHHHHHHHHHHHHHh
Q 018809 106 QGLGNSFLSHIRAVDGIFHVLR 127 (350)
Q Consensus 106 ~~~~~~~l~~l~~~d~~l~vv~ 127 (350)
.......++.+|+++.|+|
T Consensus 74 ---~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 74 ---LKSLITALNISDIAVLCIP 92 (370)
T ss_dssp ---HHHHHHHHHTCSEEEEEEC
T ss_pred ---HHHHHHHHHHCCEEEEEEc
Confidence 2223334455555554444
No 339
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.25 E-value=0.00013 Score=69.26 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=28.3
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..+...+.+| +++|+||||+||||++++|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 18 APGTLNFPEG-VTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CSEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred eeeEEEEcCC-eEEEECCCCCChhHHHHHHHHh
Confidence 4567778888 9999999999999999999973
No 340
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.23 E-value=7.4e-05 Score=67.41 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=29.6
Q ss_pred ccccccccC---CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 15 RPILGRFSS---HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 15 ~~~~~~i~~---g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..++..+.+ |..++|+|++||||||+.++|++.
T Consensus 36 ~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 36 KKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp HHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred hhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 466777888 999999999999999999999975
No 341
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.22 E-value=0.00026 Score=59.85 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
-.+++|+|++|+|||||+|.+.|..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3689999999999999999999874
No 342
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.22 E-value=3.8e-05 Score=74.11 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
....++++|.+|+|||||++.|++.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~ 34 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYV 34 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhh
Confidence 4468999999999999999999984
No 343
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.21 E-value=0.0002 Score=61.04 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=25.4
Q ss_pred cccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 16 ~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
|++.....+..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45666778899999999999999999999854
No 344
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.21 E-value=8.1e-05 Score=72.49 Aligned_cols=25 Identities=32% Similarity=0.303 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
..+++++|.+|+|||||++.|++..
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhc
Confidence 3589999999999999999998764
No 345
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.19 E-value=0.00018 Score=62.27 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.++||+|+|||||||+.+.|.++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHC
Confidence 37999999999999999999974
No 346
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.17 E-value=0.00016 Score=64.67 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=24.1
Q ss_pred cccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 18 ~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..+++.| +.|+||||+|||||++++++.
T Consensus 45 ~~~~~~g--~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 45 GARIPKG--VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp TCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence 3445666 899999999999999999987
No 347
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.17 E-value=0.00026 Score=68.19 Aligned_cols=30 Identities=30% Similarity=0.226 Sum_probs=26.0
Q ss_pred cccccCCcEEEEEcCCCCcHHHHHHHH--HcC
Q 018809 18 LGRFSSHLKIGIVGLPNVGKSTLFNTL--TKL 47 (350)
Q Consensus 18 ~~~i~~g~~igliG~ngaGKSTL~n~L--~g~ 47 (350)
.+.+.+|+++.|+|+||||||||++.| .+.
T Consensus 172 gGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~ 203 (400)
T 3lda_A 172 GGGVETGSITELFGEFRTGKSQLCHTLAVTCQ 203 (400)
T ss_dssp TTSEETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred cCCcCCCcEEEEEcCCCCChHHHHHHHHHHhc
Confidence 378999999999999999999999954 454
No 348
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.16 E-value=0.00015 Score=67.82 Aligned_cols=47 Identities=17% Similarity=0.098 Sum_probs=38.3
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcc
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~ 72 (350)
.+++..+.++.+++++|+||+||||++..|++. ..+..|.|.+.+.+
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~-----------l~~~g~kVllid~D 142 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANY-----------YAELGYKVLIAAAD 142 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHH-----------HHHTTCCEEEEECC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHH-----------HHHCCCeEEEEeCC
Confidence 356667789999999999999999999999998 45667777765543
No 349
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.15 E-value=0.00019 Score=61.81 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+++|+|+|||||||+.+.|.+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHHHC
Confidence 47999999999999999999984
No 350
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.15 E-value=0.00021 Score=60.43 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+|+.++|+|++||||||+.++|.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999986
No 351
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.13 E-value=0.00014 Score=67.20 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=24.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+|.+++++|+|||||||+++.|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999987
No 352
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.11 E-value=0.00013 Score=63.51 Aligned_cols=40 Identities=28% Similarity=0.305 Sum_probs=32.6
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcce--EEEeCC
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA--RVNIPD 70 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G--~i~~~~ 70 (350)
.+.+|..+.|+|++||||||+.+.|.+. ..|..| .+.+++
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~-----------l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQ-----------LVRDRRVHAYRLDG 62 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHH-----------HHHHHCCCEEEECH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHH-----------hccccCCcEEEECC
Confidence 4678999999999999999999999987 455666 566653
No 353
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.09 E-value=5.2e-05 Score=74.42 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..++++|.+|+|||||+|.|++.
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~ 30 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYK 30 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 354
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.08 E-value=0.00022 Score=64.81 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=24.0
Q ss_pred cccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 18 ~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
...++.| +.|+||||+|||||+++|++.
T Consensus 69 ~~~~~~g--vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 69 GARIPKG--VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp TCCCCCE--EEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCe--EEEECCCcChHHHHHHHHHHH
Confidence 3345566 899999999999999999987
No 355
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.08 E-value=0.00025 Score=68.79 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=26.1
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
.+..|.+++|+||||||||||+++|++..
T Consensus 22 ~~~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 22 GFGESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp ECTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 46678999999999999999999999874
No 356
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.02 E-value=0.00034 Score=57.78 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.0
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHH
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLT 45 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~ 45 (350)
.+.+ ...+|+||||+||||++.+|.
T Consensus 20 ~f~~-g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 20 EFKE-GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp ECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred EcCC-CeEEEECCCCCCHHHHHHHHH
Confidence 3444 377999999999999999987
No 357
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.01 E-value=0.0001 Score=71.27 Aligned_cols=25 Identities=40% Similarity=0.563 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLAI 49 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~~ 49 (350)
..++++|..|+|||||++.|+|...
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~ 35 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWT 35 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc
Confidence 5789999999999999999998743
No 358
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.99 E-value=0.00033 Score=59.25 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHc
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTK 46 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g 46 (350)
..|..++|+|+|||||||+.+.|..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999984
No 359
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.99 E-value=0.0034 Score=62.08 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=42.5
Q ss_pred ccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcch---------hHHHhhccCCCCCC
Q 018809 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF---------EWLCQLFKPKSAVP 87 (350)
Q Consensus 17 ~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l---------~~l~~~~~~~~~~~ 87 (350)
+..+++.| +.|+||||+|||||++++++.. ..+.+.+.+..+ ..+..+|+......
T Consensus 59 lg~~ip~G--vLL~GppGtGKTtLaraIa~~~-------------~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~ 123 (499)
T 2dhr_A 59 MGARIPKG--VLLVGPPGVGKTHLARAVAGEA-------------RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHA 123 (499)
T ss_dssp TSCCCCSE--EEEECSSSSSHHHHHHHHHHHT-------------TCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSS
T ss_pred ccCCCCce--EEEECCCCCCHHHHHHHHHHHh-------------CCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcC
Confidence 34455666 8999999999999999999872 144555554332 12333455433323
Q ss_pred cceeeeeeccc
Q 018809 88 AFLEIHDIAGL 98 (350)
Q Consensus 88 ~~l~~~D~~g~ 98 (350)
..+.++|-...
T Consensus 124 p~il~IDEId~ 134 (499)
T 2dhr_A 124 PCIVFIDEIDA 134 (499)
T ss_dssp SCEEEEECGGG
T ss_pred CCEEEEehHHH
Confidence 35778887644
No 360
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.95 E-value=0.00022 Score=70.61 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=40.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcchhHHHhhccCCCCCCcceeeeeeccccc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVR 100 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l~~~D~~g~~~ 100 (350)
.-+++++|.+|+|||||++.|++........++.|.+.....+.+++ ..++++|+||...
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~-----------------~~i~~iDTPGhe~ 63 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN-----------------GMITFLDTPGHAA 63 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS-----------------SCCCEECCCTTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC-----------------EEEEEEECCCcHH
Confidence 35789999999999999999998654434445555544332222222 2478999999643
No 361
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.93 E-value=0.0004 Score=59.84 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..+++|+|+|||||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999875
No 362
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.93 E-value=0.00091 Score=58.73 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+|.|||.+|+|||||++.++..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCcCHHHHHHHHHhC
Confidence 58999999999999999999865
No 363
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.92 E-value=0.00024 Score=65.63 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=35.7
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcc
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~ 72 (350)
.+++.. +|.+++++|+||+||||+...|++. ..+..|.+.+.|.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~-----------~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALY-----------YKGKGRRPLLVAAD 135 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHH-----------HHHTTCCEEEEECC
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHH-----------HHHcCCeEEEecCC
Confidence 344444 8899999999999999999999998 45667777775543
No 364
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.90 E-value=6e-05 Score=73.48 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
...++++|.+|+|||||++.|++.
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~ 29 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMD 29 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 365
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=96.90 E-value=0.00024 Score=71.89 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=18.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
-.++|+|..|+|||||++.|++.
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~ 29 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEY 29 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 36899999999999999999753
No 366
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.89 E-value=0.00052 Score=58.27 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=24.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..+|..+.|+|+|||||||+.+.|.+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457899999999999999999999976
No 367
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.87 E-value=0.00022 Score=66.87 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..++|+||||+|||||+++++|.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 78999999999999999999987
No 368
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.84 E-value=0.00061 Score=60.08 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=24.5
Q ss_pred cccccCCcEEEEEcCCCCcHHHHHHHHH
Q 018809 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLT 45 (350)
Q Consensus 18 ~~~i~~g~~igliG~ngaGKSTL~n~L~ 45 (350)
.+.+++|+.++|+|+||+|||||...++
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999999955554
No 369
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=96.81 E-value=0.00056 Score=70.63 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTK 46 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g 46 (350)
.--.++|+|..|+|||||++.|+.
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~ 32 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILF 32 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999964
No 370
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=96.81 E-value=0.00021 Score=75.25 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
-.++|+|.+|+|||||++.|++.
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~ 42 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQR 42 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999865
No 371
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.81 E-value=0.0006 Score=62.76 Aligned_cols=27 Identities=22% Similarity=0.023 Sum_probs=24.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
-..+.++||+|++|||||||.+.|.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999987
No 372
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.76 E-value=0.00011 Score=72.17 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTK 46 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g 46 (350)
...++++|..|+|||||++.|++
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHH
T ss_pred eeEEEEEECCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 373
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.75 E-value=0.00075 Score=59.81 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=25.1
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+.+|..++|.|+|||||||+.+.|...
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 558999999999999999999999986
No 374
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.72 E-value=0.00081 Score=55.67 Aligned_cols=20 Identities=40% Similarity=0.522 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 018809 25 LKIGIVGLPNVGKSTLFNTL 44 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L 44 (350)
+.++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999999
No 375
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=96.72 E-value=0.00035 Score=70.76 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=43.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCC---------------CCccccCCcceEEEeCCcchhHHHhhccCCCCCCcce
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKLAIPAEN---------------FPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFL 90 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~~~~~~~---------------~p~tT~~p~~G~i~~~~~~l~~l~~~~~~~~~~~~~l 90 (350)
.++|+|..|+|||||++.|+.....+.. ..+.|+......+.+.+ .......+
T Consensus 6 nI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~------------~~g~~~~l 73 (599)
T 3cb4_D 6 NFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKA------------SDGETYQL 73 (599)
T ss_dssp EEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEEC------------TTSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEec------------CCCCeEEE
Confidence 6899999999999999999864211110 01122222222222210 00112357
Q ss_pred eeeeecccccccccCccccchHHHHHHHHHHHHHHHhhc
Q 018809 91 EIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 91 ~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~ 129 (350)
+++|+||.... .......++.+|.++.|+|+.
T Consensus 74 ~liDTPGh~dF-------~~ev~~~l~~aD~aILVVDa~ 105 (599)
T 3cb4_D 74 NFIDTPGHVDF-------SYEVSRSLAACEGALLVVDAG 105 (599)
T ss_dssp EEEECCCCGGG-------HHHHHHHHHHCSEEEEEEETT
T ss_pred EEEECCCchHH-------HHHHHHHHHHCCEEEEEEECC
Confidence 89999997542 223445667778877777774
No 376
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.70 E-value=0.00088 Score=55.60 Aligned_cols=23 Identities=30% Similarity=0.099 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..++|+|++||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999854
No 377
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.69 E-value=0.00078 Score=67.46 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPD 70 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~ 70 (350)
+|..+.|+||||+|||||.++|++. ..+..|.+.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~-----------l~~~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKS-----------LGRKFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHH-----------HTCEEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh-----------cCCCeEEEEecc
Confidence 5889999999999999999999998 456666666654
No 378
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.69 E-value=0.00097 Score=56.55 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.++..+.|+|+|||||||+.+.|...
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45788999999999999999999853
No 379
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.68 E-value=0.0009 Score=59.25 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=23.7
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
-..|.+++|+|+|||||||+.+.|.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999999963
No 380
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.66 E-value=0.001 Score=56.22 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
|..+.|.|++||||||+.+.|...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999863
No 381
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.66 E-value=0.0011 Score=56.74 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.|..|+|.|++||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999975
No 382
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.64 E-value=0.0007 Score=57.73 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=25.0
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.++.++.+|+|+|++||||||+.+.|...
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34567789999999999999999999864
No 383
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.60 E-value=0.0012 Score=55.20 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+..+.|+|++||||||+.+.|...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999975
No 384
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.58 E-value=0.0011 Score=57.49 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=20.7
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHH
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLT 45 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~ 45 (350)
.+.+ ...+|+|+|||||||++.+|.
T Consensus 20 ~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 20 EFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp ECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred EeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 3444 477999999999999999885
No 385
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.56 E-value=0.0012 Score=56.29 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+.|+|+|++||||||+.+.|...
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHHh
Confidence 46899999999999999999974
No 386
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.55 E-value=0.0014 Score=56.33 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=22.8
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
-....+|+|.|++||||||+.+.|...
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345568999999999999999999853
No 387
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.55 E-value=0.0012 Score=62.01 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=20.4
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHH
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLT 45 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~ 45 (350)
.+.+ ...+|+|||||||||++.+|+
T Consensus 20 ~f~~-~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 20 EFKE-GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp ECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cCCC-CeEEEECCCCCCHHHHHHHHH
Confidence 3444 467899999999999999874
No 388
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.52 E-value=0.00072 Score=63.26 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=24.6
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCCCCccccCCcceEEEeCCcc
Q 018809 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72 (350)
Q Consensus 27 igliG~ngaGKSTL~n~L~g~~~~~~~~p~tT~~p~~G~i~~~~~~ 72 (350)
+.|.||||+||||+++++++.- ..|..|.+.++|..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l----------~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI----------FGPGVYRLKIDVRQ 74 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH----------SCTTCCC-------
T ss_pred EEEECCCCCCHHHHHHHHHHHH----------cCCCCCeEEeccee
Confidence 8999999999999999999931 35667777776543
No 389
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.51 E-value=0.0013 Score=57.21 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+.+++|.|++||||||+.+.|..+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc
Confidence 3578999999999999999999863
No 390
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.51 E-value=0.0015 Score=54.65 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTK 46 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g 46 (350)
..+.|.|+|||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 391
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.49 E-value=0.0013 Score=55.80 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
-..++|+|++|||||||++.|.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 357899999999999999999976
No 392
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.49 E-value=0.0016 Score=55.38 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..++..++|+|++||||||+.+.|...
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999853
No 393
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.49 E-value=0.0016 Score=56.13 Aligned_cols=26 Identities=31% Similarity=0.222 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+|..|+|.|++||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
No 394
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.49 E-value=0.0015 Score=56.14 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+|..|+|.|++||||||+.+.|...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999864
No 395
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.47 E-value=0.0014 Score=66.51 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=29.5
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
..++..+..|..+.|+||||+|||||+++|++..
T Consensus 51 ~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 51 EVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hhccccccCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 3455667789999999999999999999999983
No 396
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.45 E-value=0.0017 Score=56.62 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+|..|.|+|+|||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999999854
No 397
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.44 E-value=0.0018 Score=55.88 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+|..|+|.|++||||||+.+.|...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
No 398
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.38 E-value=0.0018 Score=54.73 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+..|+|+|+|||||||+.+.|...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999998753
No 399
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.38 E-value=0.0021 Score=55.12 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=22.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..+++|+|+|++||||||+.+.|...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44679999999999999999999853
No 400
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.38 E-value=0.0018 Score=56.11 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
++++|.|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999643
No 401
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.34 E-value=0.0012 Score=59.26 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=24.8
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
....+..+.|+|+|||||||+.+.|...
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3566789999999999999999999875
No 402
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.34 E-value=0.002 Score=55.97 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
++++|+|+|||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 403
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.32 E-value=0.0018 Score=56.12 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
-..++|+|++|+|||||++.|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999975
No 404
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.31 E-value=0.0021 Score=54.01 Aligned_cols=27 Identities=37% Similarity=0.434 Sum_probs=23.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+..+..+.|+|++||||||+.+.|...
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999843
No 405
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.31 E-value=0.0011 Score=62.69 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=26.9
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+.+++|..+.|.||||+|||||+..++..
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999999999876
No 406
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.28 E-value=0.0023 Score=56.11 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=21.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..+..+.|+|++||||||+.+.|...
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45688999999999999999999853
No 407
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.27 E-value=0.0024 Score=53.82 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+..+.|+|++||||||+-+.|...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999854
No 408
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.26 E-value=0.0024 Score=54.52 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..+|+|+|++||||||+.+.|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 368999999999999999999853
No 409
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.22 E-value=0.0021 Score=54.15 Aligned_cols=24 Identities=46% Similarity=0.537 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+.+|+|+|+|||||||+-+.|...
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999753
No 410
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.22 E-value=0.0026 Score=54.05 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+.|+|.|++||||||+.+.|...
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 411
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.21 E-value=0.0022 Score=53.73 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+.|+|+|||||||+.+.|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 412
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.21 E-value=0.0024 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..|.|.|++||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999864
No 413
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=96.21 E-value=0.0061 Score=58.61 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKLAI 49 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~~~ 49 (350)
...++++|..++|||||++.|+|...
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~ 33 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWT 33 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCC
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc
Confidence 46899999999999999999998743
No 414
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.18 E-value=0.0029 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
++|+|.|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999863
No 415
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.16 E-value=0.0027 Score=60.93 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..+++++|.+|+|||||++.|++.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~ 26 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKI 26 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhCh
Confidence 457999999999999999999984
No 416
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.16 E-value=0.0013 Score=60.77 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=26.0
Q ss_pred ccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 17 ~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
++...+ +.+++++|+||+||||+++.|++.
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHH
Confidence 444555 899999999999999999999987
No 417
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.16 E-value=0.0028 Score=53.52 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+.++|.|++||||||+.+.|...
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
No 418
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.15 E-value=0.002 Score=54.12 Aligned_cols=25 Identities=32% Similarity=0.203 Sum_probs=17.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+..|.|.|+|||||||+.+.|...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999743
No 419
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.15 E-value=0.0014 Score=56.59 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~ 47 (350)
.++|.|++||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
No 420
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.14 E-value=0.003 Score=55.07 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+|+.|.|+|+|||||||+.+.|...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999754
No 421
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.13 E-value=0.0023 Score=60.36 Aligned_cols=30 Identities=30% Similarity=0.519 Sum_probs=25.3
Q ss_pred cccccCCcE--EEEEcCCCCcHHHHHHHHHcC
Q 018809 18 LGRFSSHLK--IGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 18 ~~~i~~g~~--igliG~ngaGKSTL~n~L~g~ 47 (350)
...+..|.. ++|+|+||+||||+.++|++.
T Consensus 16 ~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 16 DNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 344667776 999999999999999999875
No 422
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.13 E-value=0.0028 Score=55.29 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+..|.|+|++||||||+.+.|...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999854
No 423
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.12 E-value=0.0032 Score=53.05 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
++..|+|.|++||||||+.+.|...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999753
No 424
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.10 E-value=0.0032 Score=56.05 Aligned_cols=26 Identities=27% Similarity=0.261 Sum_probs=23.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.++.+++|.|+|||||||+.+.|...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999753
No 425
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.09 E-value=0.0033 Score=55.88 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
...+++|.||+||||||+.+.|...
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999853
No 426
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.01 E-value=0.0036 Score=56.30 Aligned_cols=25 Identities=44% Similarity=0.652 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+..|.|+|+|||||||+.+.|...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999853
No 427
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.01 E-value=0.0036 Score=54.32 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
++++|+|++||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 428
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.00 E-value=0.0032 Score=57.71 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..+..+.|.|+|||||||+.+.|...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999864
No 429
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.00 E-value=0.0033 Score=56.45 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+.|+|+||||||||-+.|++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999864
No 430
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.97 E-value=0.0039 Score=54.31 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
|++.|+|||||||+|.-+.|+..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999854
No 431
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.96 E-value=0.0039 Score=51.79 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..++|.|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999853
No 432
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.94 E-value=0.0046 Score=54.48 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
...+..|.|+|++||||||+.+.|...
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345689999999999999999999854
No 433
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.93 E-value=0.0041 Score=54.48 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+++.|+|+|||||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
No 434
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.92 E-value=0.0037 Score=54.33 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
-.+++|+|.+|+|||||++.+++.
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999975
No 435
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.90 E-value=0.0033 Score=60.86 Aligned_cols=30 Identities=23% Similarity=0.143 Sum_probs=26.0
Q ss_pred cccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 16 ~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+++.. ++.+++++|+||+||||+...|++.
T Consensus 92 ~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp CCCCC--SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCC--CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44444 7889999999999999999999988
No 436
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.90 E-value=0.004 Score=59.43 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=27.9
Q ss_pred ccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 17 ~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+...+.+|++++|+|++|+|||||++.|.+.
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 5566789999999999999999999999875
No 437
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.90 E-value=0.004 Score=58.75 Aligned_cols=25 Identities=40% Similarity=0.664 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
...+++|+|+||+|||||++.|++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999743
No 438
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=95.85 E-value=0.0073 Score=54.06 Aligned_cols=25 Identities=36% Similarity=0.627 Sum_probs=22.6
Q ss_pred CCcEEEEEcCC---------CCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLP---------NVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~n---------gaGKSTL~n~L~g~ 47 (350)
.-.+|+|+|.+ |+|||||+|.+++.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 44789999999 99999999999984
No 439
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=95.84 E-value=0.002 Score=64.01 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=25.8
Q ss_pred cccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 16 PILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 16 ~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+...+.+| ..+|+|+||||||||+.+|...
T Consensus 53 ~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 53 QLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred eEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 455567777 8899999999999999999654
No 440
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.83 E-value=0.003 Score=59.03 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=25.5
Q ss_pred ccccccCCcE--EEEEcCCCCcHHHHHHHHHcC
Q 018809 17 ILGRFSSHLK--IGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 17 ~~~~i~~g~~--igliG~ngaGKSTL~n~L~g~ 47 (350)
+...+..|.. +.|.||||+||||+++++++.
T Consensus 37 L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 37 VRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3344556666 899999999999999999986
No 441
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.80 E-value=0.0054 Score=50.85 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
-..++|.|++||||||+-+.|...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999753
No 442
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.78 E-value=0.0053 Score=52.52 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~ 47 (350)
+++|.|++||||||+.+.|...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 7999999999999999999874
No 443
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.71 E-value=0.0055 Score=51.71 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..++|+|++|||||||++.|...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999875
No 444
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.69 E-value=0.0061 Score=54.35 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~ 47 (350)
-+.|+||||+|||||.+++.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4889999999999999999986
No 445
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.68 E-value=0.0058 Score=57.62 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=25.5
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+.+++|..+.|.|+||+|||||...++..
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999999997777654
No 446
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.64 E-value=0.0071 Score=53.11 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=23.8
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..++...++.|+|||||||+|.-+.|+..
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34556678899999999999999998854
No 447
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.64 E-value=0.006 Score=56.05 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=25.1
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+.++..+.|.||||+|||||.+++.+.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 3567888999999999999999999986
No 448
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=95.56 E-value=0.0056 Score=61.29 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=49.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC----------------CCC------CCccccCCcceEEEeCCcchhHHHhhc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIP----------------AEN------FPFCTIEPNEARVNIPDERFEWLCQLF 80 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~~~~----------------~~~------~p~tT~~p~~G~i~~~~~~l~~l~~~~ 80 (350)
+=-.+||||..++|||||.-.|+-..-. +.+ --+-|+....-.+.+.|
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~---------- 99 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD---------- 99 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT----------
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC----------
Confidence 3457999999999999999988521000 000 01112222222222222
Q ss_pred cCCCCCCcceeeeeecccccccccCccccchHHHHHHHHHHHHHHHhhc
Q 018809 81 KPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAF 129 (350)
Q Consensus 81 ~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~l~~l~~~d~~l~vv~a~ 129 (350)
..+.++||||.... .....+.|+.+|..+.|+||.
T Consensus 100 -------~~iNlIDTPGHvDF-------~~Ev~raL~~~DgAvlVvda~ 134 (548)
T 3vqt_A 100 -------RVVNLLDTPGHQDF-------SEDTYRVLTAVDSALVVIDAA 134 (548)
T ss_dssp -------EEEEEECCCCGGGC-------SHHHHHHHHSCSEEEEEEETT
T ss_pred -------EEEEEEeCCCcHHH-------HHHHHHHHHhcCceEEEeecC
Confidence 35889999997654 344557777788777777764
No 449
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=95.55 E-value=0.0054 Score=61.98 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKLA 48 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~~ 48 (350)
-+++|+|.+|+|||||++.|++..
T Consensus 6 ~~V~IvGh~d~GKTTLl~~L~~~~ 29 (594)
T 1g7s_A 6 PIVSVLGHVDHGKTTLLDHIRGSA 29 (594)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHhccc
Confidence 579999999999999999999863
No 450
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.51 E-value=0.0057 Score=59.66 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=28.9
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+.+.+.+.+|+.+.|.|+||+|||||...+++.
T Consensus 194 D~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 194 DRMTSGFQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp HHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 345577999999999999999999999988875
No 451
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.48 E-value=0.0039 Score=60.53 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
++.+++++|+|||||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999965
No 452
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.45 E-value=0.008 Score=51.66 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
...++||.|.+||||||+-+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999853
No 453
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=95.43 E-value=0.014 Score=54.43 Aligned_cols=22 Identities=18% Similarity=0.350 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~ 47 (350)
++.|+|..|+|||||++.+.+.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~ 22 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHN 22 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSC
T ss_pred CEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988765
No 454
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.40 E-value=0.0068 Score=63.50 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=26.0
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+.++..+.|+||||+|||||.++|++.
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4678899999999999999999999997
No 455
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.38 E-value=0.0089 Score=54.44 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHc
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTK 46 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g 46 (350)
...+|+|.|++||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999983
No 456
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.37 E-value=0.0071 Score=53.49 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=20.9
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
....|..|.|.|++||||||+.+.|...
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999999865
No 457
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.32 E-value=0.0091 Score=56.60 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=20.7
Q ss_pred cccCCcEEEEEcCCCCcHHHHHHHHH
Q 018809 20 RFSSHLKIGIVGLPNVGKSTLFNTLT 45 (350)
Q Consensus 20 ~i~~g~~igliG~ngaGKSTL~n~L~ 45 (350)
.+.+ ....|+|+|||||||++.+|.
T Consensus 22 ~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 22 KFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp ECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred ecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 3444 477899999999999999876
No 458
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.28 E-value=0.007 Score=57.69 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+..+.|+|++|+||||+++.|++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 5678899999999999999999986
No 459
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.26 E-value=0.01 Score=52.53 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..++.||+|+|||||||+-+.|...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 4588999999999999999998753
No 460
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.23 E-value=0.01 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTK 46 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g 46 (350)
..+|+|.|++||||||+-+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 461
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.17 E-value=0.012 Score=51.15 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+..+.|.||||+|||||.+.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999875
No 462
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.10 E-value=0.015 Score=48.26 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+..+.|.|++|+|||||.+.+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 3466889999999999999999865
No 463
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.09 E-value=0.013 Score=54.93 Aligned_cols=29 Identities=28% Similarity=0.224 Sum_probs=26.4
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+.+++|.++.|.|+||+|||||...++..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999888864
No 464
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.09 E-value=0.013 Score=51.28 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=22.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
-.|..|.|.|++||||||+.+.|...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35889999999999999999999754
No 465
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.08 E-value=0.012 Score=53.59 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTK 46 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g 46 (350)
..+.|+|+|||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999985
No 466
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.019 Score=55.00 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=22.2
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+++..-+-|.||||+|||+|.+++++.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 344445678999999999999999986
No 467
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.99 E-value=0.013 Score=53.18 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
++..+.|.||||+||||+.+++++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4678899999999999999999976
No 468
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.96 E-value=0.012 Score=55.04 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=23.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..+..+.|.||+|+|||||++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999975
No 469
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.91 E-value=0.012 Score=57.76 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 018809 27 IGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 27 igliG~ngaGKSTL~n~L~g~ 47 (350)
+.|+||||+|||||.+++++.
T Consensus 52 vLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999986
No 470
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.89 E-value=0.0074 Score=53.18 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=24.2
Q ss_pred ccccccCCcEEEEEcCCCCcHHHHHHHHHc
Q 018809 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (350)
Q Consensus 17 ~~~~i~~g~~igliG~ngaGKSTL~n~L~g 46 (350)
+...+..|..+.++|++||||||++..+..
T Consensus 69 ~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 69 ILEAISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 334456799999999999999998877653
No 471
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.88 E-value=0.015 Score=54.61 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 018809 26 KIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+.|.||||+|||||++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 8999999999999999999986
No 472
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.88 E-value=0.014 Score=50.50 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+.+++|+|++||||||+.+.|...
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999864
No 473
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.77 E-value=0.017 Score=50.97 Aligned_cols=24 Identities=42% Similarity=0.463 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
|..|+|.|..||||||+.+.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999999999865
No 474
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.018 Score=55.76 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=22.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+++..=+-|.||||+|||+|.+++++.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344445789999999999999999986
No 475
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.77 E-value=0.017 Score=53.70 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=26.2
Q ss_pred ccccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 19 ~~i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+.+++|..+.|.|+||+|||||...++..
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 67899999999999999999998888754
No 476
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.76 E-value=0.015 Score=57.64 Aligned_cols=34 Identities=18% Similarity=0.295 Sum_probs=30.2
Q ss_pred CcccccccccCCcEEEEEcCCCCcHHHHHHHHHc
Q 018809 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (350)
Q Consensus 13 ~~~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g 46 (350)
.+.++...+..+..+.|.|.+||||||++|+|..
T Consensus 156 ~G~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 156 AGEPVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp TSCEEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 4567888888899999999999999999999875
No 477
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.75 E-value=0.018 Score=51.12 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=22.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..|..|.|.|++||||||+.+.|...
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999764
No 478
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.75 E-value=0.017 Score=49.29 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcC
Q 018809 25 LKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 25 ~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..+.|.|++|+|||||.+++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67889999999999999999976
No 479
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=94.74 E-value=0.028 Score=60.64 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+..+++++|.+|+|||||++.|++.
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 3467999999999999999999974
No 480
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.73 E-value=0.016 Score=52.77 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
...+.|.||||+||||+.+++.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 357899999999999999999987
No 481
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.70 E-value=0.02 Score=50.03 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+|..|.+.|++||||||+.+.|...
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999864
No 482
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.69 E-value=0.026 Score=54.38 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=22.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.....+.|+|+|||||||+.+.|...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999999854
No 483
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.64 E-value=0.021 Score=49.98 Aligned_cols=26 Identities=38% Similarity=0.313 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..|..|.+.|++||||||+.+.|...
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~ 28 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKK 28 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999876
No 484
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.64 E-value=0.017 Score=53.55 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=27.3
Q ss_pred ccccccccCCcEEEEEcCCCCcHHHHHHHHHc
Q 018809 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTK 46 (350)
Q Consensus 15 ~~~~~~i~~g~~igliG~ngaGKSTL~n~L~g 46 (350)
+.+.+.+.+|..+.|.|+||+|||||...++.
T Consensus 59 D~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 59 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 44557899999999999999999999777764
No 485
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.024 Score=54.95 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=22.9
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+++..=+-|.||||+|||+|.+++++.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 445556778999999999999999986
No 486
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.61 E-value=0.02 Score=51.65 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=23.4
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+..+.-+-|.||||+|||||.+++++.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 355667899999999999999999875
No 487
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.58 E-value=0.011 Score=52.92 Aligned_cols=27 Identities=41% Similarity=0.393 Sum_probs=23.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..++..|+|.|++||||||+.+.|...
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 356789999999999999999998865
No 488
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.58 E-value=0.018 Score=56.35 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=23.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
-.|.+++|+|++|+|||||+|.|.+.
T Consensus 149 ~kGq~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 149 IKGGKIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp ETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCccHHHHHHHhh
Confidence 46899999999999999999999875
No 489
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.46 E-value=0.022 Score=50.54 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHH
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLT 45 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~ 45 (350)
....++.++|++|+|||||++.|+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 345788899999999999999998
No 490
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.42 E-value=0.021 Score=56.51 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLT 45 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~ 45 (350)
+..+|+|+|++||||||+++.|+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999999
No 491
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.39 E-value=0.02 Score=47.36 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+..+.|.|++|+|||||.+.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456789999999999999999865
No 492
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.39 E-value=0.012 Score=54.03 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=18.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 23 SHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 23 ~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
.+.+|||.|++||||||+.+.|...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998863
No 493
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.39 E-value=0.025 Score=49.82 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..|..|.+.|++||||||+.+.|...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999864
No 494
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.34 E-value=0.023 Score=55.01 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=23.0
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+++..-+-|.||||+|||+|.+++++.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 444556789999999999999999986
No 495
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.28 E-value=0.027 Score=49.28 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=24.0
Q ss_pred ccccccCCcEEEEEcCCCCcHHHHHHHH
Q 018809 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTL 44 (350)
Q Consensus 17 ~~~~i~~g~~igliG~ngaGKSTL~n~L 44 (350)
+.|.+++|..+.|.|+||+|||||.-.+
T Consensus 23 l~GGl~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 23 IEGGFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp TTTSEETTCEEEEECCTTSSHHHHHHHH
T ss_pred hcCCCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 3468999999999999999999996543
No 496
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.24 E-value=0.016 Score=56.30 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
..+++++|+||+||||+.+.|++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999984
No 497
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.22 E-value=0.021 Score=52.63 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 24 HLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 24 g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
+..+.|.||||+|||||++++.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457889999999999999999976
No 498
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=94.20 E-value=0.01 Score=60.47 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 018809 26 KIGIVGLPNVGKSTLFNTLT 45 (350)
Q Consensus 26 ~igliG~ngaGKSTL~n~L~ 45 (350)
.+||+|..++|||||.-.|+
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL 23 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLL 23 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 37999999999999998885
No 499
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.06 E-value=0.024 Score=49.32 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=22.5
Q ss_pred ccCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 21 FSSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 21 i~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
++..-.+.+.||||+||||+..+|+..
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 444456899999999999999999865
No 500
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.03 E-value=0.032 Score=49.33 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=21.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcC
Q 018809 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47 (350)
Q Consensus 22 ~~g~~igliG~ngaGKSTL~n~L~g~ 47 (350)
....-+.|.||||+||||+.+++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34455789999999999999999875
Done!