RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 018809
(350 letters)
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop,
OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Length = 396
Score = 590 bits (1523), Expect = 0.0
Identities = 211/351 (60%), Positives = 258/351 (73%), Gaps = 5/351 (1%)
Query: 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
MPPK K + PI+GRF + LKIGIVGLPNVGKST FN LT AENFPFCTI+
Sbjct: 1 MPPK--KGGDGIKPPPIIGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTID 58
Query: 61 PNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVD 120
PNE+RV +PDERF++LCQ KP S +PAFL + DIAGLV+GAH GQGLGN+FLSHI A D
Sbjct: 59 PNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFLSHISACD 118
Query: 121 GIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQ 180
GIFH+ RAFED DI HV+ SVDP+RD+E+I EL+LKD E + I+ +EK R DK+
Sbjct: 119 GIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKK 178
Query: 181 LKIEHELCQRVKAW-LQDGKDVR-LGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQR 238
LK E+++ +VK+W + K VR DW +IE+LN LT+KP+VYLVN++EKDY R
Sbjct: 179 LKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIR 238
Query: 239 KKNKFLPKIHAWVQEHG-GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKT 297
KKNK+L KI WV ++ G +IPFS ALE L ++ +E KY E N QSALPKIIK
Sbjct: 239 KKNKWLIKIKEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKA 298
Query: 298 GFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVVA 348
GF+A+ L YFFTAGPDEV+ W IR+ TKAPQAAG IHTDFE+GFI AEV+
Sbjct: 299 GFAALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGKIHTDFEKGFIMAEVMK 349
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics,
GTP1OBG, PSI, protein structure initiative; 2.80A
{Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Length = 392
Score = 574 bits (1481), Expect = 0.0
Identities = 179/355 (50%), Positives = 246/355 (69%), Gaps = 11/355 (3%)
Query: 1 MPPKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTI 59
MPPK K+ + GR ++LK GIVG+PNVGKST F +TK + N+P+ TI
Sbjct: 1 MPPK----KQQEVVKVQWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATI 56
Query: 60 EPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAV 119
+P EA+V +PDERF+WLC+ +KPKS VPAFL + DIAGL +GA G GLGN+FLSH+RAV
Sbjct: 57 DPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAV 116
Query: 120 DGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSN-- 177
D I+ V+RAF+D +IIHV+ VDP+RDL +I EL +KD EF+E+ +E + K R
Sbjct: 117 DAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANT 176
Query: 178 --DKQLKIEHELCQRVKAWLQDGKD-VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEK 234
K K E + ++V +L + K +R GDW ++EI+N+ LLTAKPV+YLVNM+E+
Sbjct: 177 LEMKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSER 236
Query: 235 DYQRKKNKFLPKIHAWVQEHG-GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPK 293
D+ R+KNK+LPKI W+ E+ G+ +IP S A E L + +EA + C++ +S LPK
Sbjct: 237 DFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPK 296
Query: 294 IIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVVA 348
II TG++A+NLI +FT G DEV+ W IR+ TKAPQAAG IHTDFE+ F+ E++
Sbjct: 297 IIVTGYNALNLINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMH 351
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics,
structure 2 function project, S2F, unknown function;
2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Length = 363
Score = 435 bits (1122), Expect = e-154
Identities = 131/325 (40%), Positives = 204/325 (62%), Gaps = 5/325 (1%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
K GIVGLPNVGKSTLFN LTK I A N+PFCTIEPN V +PD R + L ++ KP+
Sbjct: 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPER 62
Query: 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPV 144
+P +E DIAGLV GA +G+GLGN FL++IR D I HV+R FE+ DI+HV +DP+
Sbjct: 63 ILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPL 122
Query: 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204
D++ I+ EL L D++ ER I+ ++K K DK+ K E + +++ L++ +R
Sbjct: 123 DDIDTINTELALADLDSCERAIQRLQKRAK-GGDKEAKFELSVMEKILPVLENAGMIRSV 181
Query: 205 DWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSC 264
+++ + ++ LT KP +Y+ N+NE + + N +L ++ + G ++P
Sbjct: 182 GLDKEELQAIKSYNFLTLKPTMYIANVNEDGF--ENNPYLDRVREIAAKEGAV-VVPVCA 238
Query: 265 ALERNLADMPPDEAAKYCEENKVQ-SALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQ 323
A+E +A++ +E ++ ++ ++ L ++I+ G++ +NL +FTAG EV+ W +
Sbjct: 239 AIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVG 298
Query: 324 TKAPQAAGTIHTDFERGFICAEVVA 348
AP+AA IHTDFE+GFI AEV+A
Sbjct: 299 ATAPKAAAVIHTDFEKGFIRAEVIA 323
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio
project on protein structural and functional analyses;
HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Length = 368
Score = 422 bits (1088), Expect = e-148
Identities = 145/331 (43%), Positives = 196/331 (59%), Gaps = 9/331 (2%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
L +GIVGLPNVGKSTLFN LT+ A N+PF TI+ N V + DER L + F
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGE 61
Query: 85 A----VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDS 140
VP +E DIAGLV+GAH+G+GLGN FL+HIR V I HVLR F DPD++HV
Sbjct: 62 RVPPVVPTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGR 121
Query: 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200
VDP+ D EV+ EL L D+ +ERR+E + K + D++ E + + LQ+GK
Sbjct: 122 VDPLEDAEVVETELLLADLATLERRLERLRKEAR--ADRERLPLLEAAEGLYVHLQEGKP 179
Query: 201 VRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQ-RKKNKFLPKIHAWVQEHGGEQI 259
R A L LLTAKPV+Y+ N+ E+D + N + + E G E +
Sbjct: 180 ARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAE-V 238
Query: 260 IPFSCALERNLADMPPDEAAKYCEENKVQ-SALPKIIKTGFSAINLIYFFTAGPDEVKCW 318
+ S LE LA++ +EA + +Q S L ++ + G+ A++L+ FFTAG EV+ W
Sbjct: 239 VVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRAW 298
Query: 319 QIRRQTKAPQAAGTIHTDFERGFICAEVVAC 349
+RR TKAP+AAG IH+D ERGFI AEV+
Sbjct: 299 TVRRGTKAPRAAGEIHSDMERGFIRAEVIPW 329
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 325 bits (835), Expect = e-110
Identities = 84/375 (22%), Positives = 135/375 (36%), Gaps = 59/375 (15%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-IPDERFEWLCQLFKPK 83
++IG+VG PNVGKST F+ T + + N+PF TIE N I D + L P+
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQ 60
Query: 84 SA------VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDII-H 136
+ +++ D+AGLV GAHEG+GLGN FL +R + HV+ A D
Sbjct: 61 NYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQ 120
Query: 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELC-------- 188
D DPV D+E + E+ + + + K +K K E
Sbjct: 121 PTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNEN 180
Query: 189 QRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIH 248
+A + W D+ + KP+V N + ++ + ++
Sbjct: 181 DVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA----SDEQIKRLV 236
Query: 249 AWVQEHGGEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPK--------------- 293
++ G +IP S A E L +Y L
Sbjct: 237 REEEKRGYI-VIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEK 295
Query: 294 -------------IIKTGFSAINLIYFFTA----------GPDEVKCWQIRRQTKAPQAA 330
I + F + LI + G + +++ + A
Sbjct: 296 VLDRFGSTGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLA 355
Query: 331 GTIHTDFERGFICAE 345
+HTD +GF+ A
Sbjct: 356 FKVHTDLGKGFLYAI 370
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 90.0 bits (224), Expect = 2e-20
Identities = 56/180 (31%), Positives = 80/180 (44%), Gaps = 39/180 (21%)
Query: 27 IGIVGLPNVGKSTLFNTLT----KLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKP 82
+G+VG P+VGKSTL + ++ K+A ++ F T+ PN V D R
Sbjct: 161 VGLVGFPSVGKSTLLSVVSSAKPKIA----DYHFTTLVPNLGMVETDDGR---------- 206
Query: 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVD 142
S V A D+ GL+ GAH+G GLG+ FL HI I HV+ D+ ++ D
Sbjct: 207 -SFVMA-----DLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVI------DMSGLEGR-D 253
Query: 143 PVRDLEVISAELRLKDIEFMER-RIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV 201
P D I+ EL ++ ER +I K D + E + K L D V
Sbjct: 254 PYDDYLTINQELSEYNLRLTERPQIIVANKM-----D--MPEAAENLEAFKEKLTDDYPV 306
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 89.5 bits (223), Expect = 4e-20
Identities = 42/142 (29%), Positives = 64/142 (45%), Gaps = 35/142 (24%)
Query: 27 IGIVGLPNVGKSTLFNTLT----KLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKP 82
+G+VG PN GKS+L +T K+A +PF T+ PN V + +E
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAHPKIA----PYPFTTLSPNLGVVEVSEEE---------- 205
Query: 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVD 142
A DI G++ GA EG+GLG FL HI + +V +D + +
Sbjct: 206 -RFTLA-----DIPGIIEGASEGKGLGLEFLRHIARTRVLLYV-----------LDAADE 248
Query: 143 PVRDLEVISAELRLKDIEFMER 164
P++ LE + E+ D + R
Sbjct: 249 PLKTLETLRKEVGAYDPALLRR 270
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 72.9 bits (179), Expect = 3e-15
Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 34/147 (23%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
I + G PNVGKS+ N +++ + +++ F T + ++
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKY------------- 78
Query: 87 PAFLEIHDIAGLVRGAHEGQGLGN----SFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVD 142
+I D GL+ A E + + L+HI V I + +D S
Sbjct: 79 ----QIIDTPGLLDRAFENRNTIEMTTITALAHINGV--ILFI-----------IDISEQ 121
Query: 143 PVRDLEVISAELRLKDIEFMERRIEDV 169
++ F + I
Sbjct: 122 CGLTIKEQINLFYSIKSVFSNKSIVIG 148
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.2 bits (150), Expect = 1e-10
Identities = 48/328 (14%), Positives = 91/328 (27%), Gaps = 70/328 (21%)
Query: 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
R L + I G+ GK+ + + F N N P+ E
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 75 WLCQLF---------KPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHV 125
L +L + + L IH I +R + + N L V
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----------V 249
Query: 126 LRAFEDPDIIHVDDSVDP-------VRDLEVISAELRLKDIEFMERRIEDVEKSMKRSND 178
L ++ ++ + R +V L ++ ++
Sbjct: 250 LLNVQNAKAW---NAFNLSCKILLTTRFKQVTDF---LSAATTTHISLDHHSMTLTPDEV 303
Query: 179 KQL----------KIEHELCQR-------VKAWLQDGKDVRLGDWKAADIEILNTFQLLT 221
K L + E+ + ++DG +WK + + L T +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA-TWDNWKHVNCDKLTTIIESS 362
Query: 222 AKPVVYLVNMNEKDYQRKKNKF--LPKIHAWVQEHGGEQIIPFSCALERNLADMPPDEAA 279
L + +Y++ ++ P A IP + L D+ +
Sbjct: 363 ------LNVLEPAEYRKMFDRLSVFPP-SAH---------IP-TILLSLIWFDVIKSDVM 405
Query: 280 KYCEENKVQSALPKIIKTGFSAINLIYF 307
+ S + K K +I IY
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYL 433
Score = 52.9 bits (126), Expect = 1e-07
Identities = 72/336 (21%), Positives = 116/336 (34%), Gaps = 113/336 (33%)
Query: 1 MPPKASKSKEAP------AE--RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAE 52
+P + + P AE R L + + + L + +S+L N L PAE
Sbjct: 318 LPREVLTT--NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-NVLE----PAE 370
Query: 53 ---NFPFCTIEPNEARVNIPDERFE--W-----------LCQLFKPKSAV-----PAFLE 91
F ++ P +IP W + +L K S V + +
Sbjct: 371 YRKMFDRLSVFPPS--AHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQPKESTIS 427
Query: 92 IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDII--HVDD---------- 139
I I ++ E N + H VD +++ + F+ D+I ++D
Sbjct: 428 IPSIYLELKVKLE-----NEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 140 -SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDG 198
+++ + + + L D F+E+ KI H+ AW G
Sbjct: 482 KNIEHPERMTLFR-MVFL-DFRFLEQ-----------------KIRHD----STAWNASG 518
Query: 199 KDVRLGDWKAADIEILNTFQ-LLTAKPVVYLVNMNEKDYQRKKN---KFLPKIHAWVQEH 254
ILNT Q L KP Y+ + N+ Y+R N FLPKI
Sbjct: 519 -------------SILNTLQQLKFYKP--YICD-NDPKYERLVNAILDFLPKI------- 555
Query: 255 GGEQII--PFSCALERNLADMPPDEAAKYCEENKVQ 288
E +I ++ L L M DEA +VQ
Sbjct: 556 -EENLICSKYTDLLRIAL--MAEDEAIFEEAHKQVQ 588
Score = 39.5 bits (91), Expect = 0.002
Identities = 32/220 (14%), Positives = 63/220 (28%), Gaps = 65/220 (29%)
Query: 120 DGIFHVLRAF-EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDV-----EKSM 173
D + AF ++ D V D + E I + KD R+ E+ +
Sbjct: 20 DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
Query: 174 KRSNDKQLKIEHELCQRVKAWLQDGKDVRLGDWKAADIE-ILNTFQLLTAKPVVYLVNMN 232
++ ++ L+I ++ +L K + + T + + +Y N
Sbjct: 80 QKFVEEVLRINYK-------FLMSP-------IKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 233 EKDYQRKKNKFLPKIHAWVQE---------HG----GEQIIPFSCALERNLADMPPDEAA 279
Y + + K+ + E G G+ + A
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-----------------AL 168
Query: 280 KYCEENKVQSALPKIIKTGFSAINLIYFFTAG----PDEV 315
C KVQ + I++ P+ V
Sbjct: 169 DVCLSYKVQCKMD----------FKIFWLNLKNCNSPETV 198
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 55.6 bits (134), Expect = 6e-09
Identities = 35/171 (20%), Positives = 57/171 (33%), Gaps = 39/171 (22%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
+ I G PNVGKSTL LT ++PF T N + R+
Sbjct: 170 VVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRY------------- 216
Query: 87 PAFLEIHDIAGLVRGAHEGQGLG--NSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPV 144
+I D GL+ + + L+ + I ++ DP + P+
Sbjct: 217 ----QIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIF----DPS----EHCGFPL 264
Query: 145 RDLEVISAELRL------------KDIEFMERRIEDVEKSMKRSNDKQLKI 183
+ + E+ K E I+ +EK +K +KI
Sbjct: 265 EEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKI 315
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 48.4 bits (116), Expect = 1e-06
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73
IGIVG N GK++LFN+LT L + F T+ P + I + +
Sbjct: 182 IGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins,
cell membrane, ION transport, transmembrane; HET: GNP;
1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A*
2wjh_A*
Length = 165
Score = 46.7 bits (112), Expect = 2e-06
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
+I ++G PNVGKST+FN LT + N+P T+E E E+F+
Sbjct: 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFK 53
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport,
transmembrane; HET: GDP; 2.20A {Methanocaldococcus
jannaschii}
Length = 188
Score = 46.8 bits (112), Expect = 2e-06
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
+I ++G PNVGKST+FN LT + N+P T+E E E+F+
Sbjct: 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFK 57
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small
GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga
maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 46.5 bits (111), Expect = 4e-06
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
+K+ + G PNVGK++LFN LT N+P T+E E
Sbjct: 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTIN 55
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 44.8 bits (107), Expect = 7e-06
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 26 KIGIVGLPNVGKSTLFNTLT--KLAI 49
K+ IVG PNVGKS+LFN L + A+
Sbjct: 3 KVVIVGRPNVGKSSLFNRLLKKRSAV 28
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 45.4 bits (108), Expect = 1e-05
Identities = 19/52 (36%), Positives = 28/52 (53%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
+ +VG PNVGK+T+FN LT L N+P T+E E + ++ F
Sbjct: 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFL 53
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION
transport, membrane; 1.80A {Escherichia coli} PDB:
3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 45.4 bits (108), Expect = 1e-05
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
L IG++G PN GK+TLFN LT N+ T+E E + + D +
Sbjct: 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVT 53
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron
uptake, cell inner membrane, cell GTP-binding, ION
transport, membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 45.0 bits (107), Expect = 1e-05
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
++G PN GK+TLFN LT N+P T+E + + E
Sbjct: 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIE 51
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 44.2 bits (105), Expect = 1e-05
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN 67
I G NVGKSTL LT + P T + E
Sbjct: 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK 44
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA
maturation, GTP-binding domain, maturation enzyme,
oxidoreductase; 2.99A {Thermotoga neapolitana}
Length = 423
Score = 44.2 bits (105), Expect = 3e-05
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 27 IGIVGLPNVGKSTLFNTLT--KLAI 49
I + G NVGKS+ N L ++I
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSI 61
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 44.0 bits (105), Expect = 5e-05
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 27 IGIVGLPNVGKSTLFNTLT--KLAI 49
+ IVG PNVGKST+FN + +++I
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISI 30
Score = 41.7 bits (99), Expect = 2e-04
Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 46/133 (34%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV---NIP-------DERFE 74
++ ++G PNVGKS+L N + E RV N+ D F
Sbjct: 176 IQFCLIGRPNVGKSSLVNAML----------------GEERVIVSNVAGTTRDAVDTSFT 219
Query: 75 WLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDI 134
+ Q F I D AG+ + + S +RA L+A + ++
Sbjct: 220 YNQQEFV----------IVDTAGMRKKGKVYETT--EKYSVLRA-------LKAIDRSEV 260
Query: 135 -IHVDDSVDPVRD 146
V D + + +
Sbjct: 261 VAVVLDGEEGIIE 273
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 43.6 bits (104), Expect = 5e-05
Identities = 17/25 (68%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 27 IGIVGLPNVGKSTLFNTLT--KLAI 49
+ IVG PNVGKSTLFN L K AI
Sbjct: 4 VLIVGRPNVGKSTLFNKLVKKKKAI 28
Score = 41.3 bits (98), Expect = 3e-04
Identities = 32/149 (21%), Positives = 51/149 (34%), Gaps = 47/149 (31%)
Query: 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV--- 66
E + + +K+ IVG PNVGKSTLFN + N+ R
Sbjct: 166 EKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAIL----------------NKERALVS 209
Query: 67 NIP-------DERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAH-EGQGLGNSFLSHIRA 118
IP D+ + + D AGL R + E + + S+ R
Sbjct: 210 PIPGTTRDPVDDEVFIDGRKYV----------FVDTAGLRRKSRVEPRTV--EKYSNYRV 257
Query: 119 VDGIFHVLRAFEDPDI-IHVDDSVDPVRD 146
+ + E D+ + V D+ +
Sbjct: 258 -------VDSIEKADVVVIVLDATQGITR 279
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 43.0 bits (102), Expect = 5e-05
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTK 46
F ++ IVG+PN GKST+ N L
Sbjct: 94 LSFDRLARVLIVGVPNTGKSTIINKLKG 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 43.1 bits (102), Expect = 6e-05
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLT 45
S +I ++G PN GK++LFN +T
Sbjct: 2 SMTEIALIGNPNSGKTSLFNLIT 24
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 42.4 bits (101), Expect = 1e-04
Identities = 16/25 (64%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
Query: 27 IGIVGLPNVGKSTLFNTL--TKLAI 49
I IVG PNVGKSTL N L K++I
Sbjct: 11 IAIVGRPNVGKSTLLNKLLGQKISI 35
Score = 33.2 bits (77), Expect = 0.11
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 204 GDWKAADIEILNTFQLLTAKPVVYLVNMNEK-DYQRKKNKFLPKIHAWVQEHGGEQIIPF 262
W D +LN + PV+ VN K D ++K LP + + I+P
Sbjct: 99 TRWTPDDEMVLNKLRE-GKAPVILAVN---KVDNVQEKADLLPHLQFLASQMNFLDIVPI 154
Query: 263 SCALERN 269
S A
Sbjct: 155 S-AETGL 160
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S
rRNA, 30S ribosome ASSE GTP-binding,
nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus}
PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 42.5 bits (101), Expect = 1e-04
Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 27 IGIVGLPNVGKSTLFNTL--TKLAI 49
+ IVG PNVGKSTL N L TK++I
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSI 37
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 42.1 bits (100), Expect = 1e-04
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 27 IGIVGLPNVGKSTLFNTL--TKLAI 49
+ IVG PNVGKSTL N L K+A
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAP 34
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 41.9 bits (99), Expect = 2e-04
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 6 SKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTK 46
+E G ++ I+G+PNVGKSTL N L K
Sbjct: 102 EILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAK 142
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 40.2 bits (95), Expect = 3e-04
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK--LAI 49
+K+ I G PN GKS+L N L AI
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAI 31
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 41.1 bits (96), Expect = 3e-04
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTK 46
+ R+ + +VG NVGKST N + +
Sbjct: 156 INRYREGGDVYVVGCTNVGKSTFINRIIE 184
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 40.6 bits (96), Expect = 6e-04
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK--LAI 49
LK+ IVG PNVGKS+L N ++ AI
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRAI 251
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 40.2 bits (95), Expect = 7e-04
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK 46
L++ IVG PNVGKSTL N L
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLN 265
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 40.3 bits (94), Expect = 7e-04
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 26 KIGIVGLPNVGKSTLFNTLTK 46
+ +VG NVGKST N + K
Sbjct: 162 DVYVVGCTNVGKSTFINRMIK 182
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 40.2 bits (95), Expect = 7e-04
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK 46
+ I G PN GKSTL NTL
Sbjct: 234 VSTVIAGKPNAGKSTLLNTLLG 255
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET:
GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 39.0 bits (91), Expect = 0.001
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 3 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTL 44
P A++ K + + + + + ++G VGKS+ N+L
Sbjct: 15 PAATQEKLIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSL 56
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 37.8 bits (88), Expect = 0.003
Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 39/152 (25%)
Query: 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC 77
+ R SS + VGL + GK+ LF L + +I + A + + R
Sbjct: 1 MARKSSQRAVLFVGLCDSGKTLLFVRL-LTGQYRDTQT--SITDSSAIYKVNNNR----- 52
Query: 78 QLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHI-RAVDGIFHVLRAFEDPDIIH 136
L + D+ G HE L L + ++
Sbjct: 53 ---------GNSLTLIDLPG-----HE--SLRFQLLDRFKSSARA------------VVF 84
Query: 137 VDDSVDPVRDLEVISAELR--LKDIEFMERRI 166
V DS R+++ ++ L L D ++
Sbjct: 85 VVDSAAFQREVKDVAEFLYQVLIDSMALKNSP 116
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon;
HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB:
3bb1_A*
Length = 270
Score = 37.2 bits (86), Expect = 0.004
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 3 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTL 44
A+++K + + L I ++G VGKS+ N++
Sbjct: 18 APATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSI 59
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 37.4 bits (86), Expect = 0.005
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNTLT 45
SS L + + G GKS+ NTL
Sbjct: 67 SSVLNVAVTGETGSGKSSFINTLR 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.018
Identities = 28/203 (13%), Positives = 61/203 (30%), Gaps = 68/203 (33%)
Query: 73 FEWL---CQLFKPKSAVPAFLEIHDIAG---------LVRGAHEGQGLGNSFLSHIRAVD 120
F ++ C P +++P + + + + Q ++ +
Sbjct: 304 F-FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ-----VQDYVNKTN 357
Query: 121 GIFHVLRAFEDPDI-IHVDDSVD------PVRDLEVISAELR-LK-----D---IEFMER 164
+ I + + P + L ++ LR K D I F ER
Sbjct: 358 S-----HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 165 RIEDVEK---------S--MKRSNDKQLKIEHELCQRVKAW----LQ-------DGKDVR 202
+++ + S + ++D I +L + ++ +Q DG D+R
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDL---INKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 203 LGDWKAADIEILNTFQLLTAKPV 225
+ I + PV
Sbjct: 470 VLS---GSI-SERIVDCIIRLPV 488
Score = 35.0 bits (80), Expect = 0.045
Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 31/118 (26%)
Query: 44 LTKLAIPA-----ENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEI--HDIA 96
++A+P N+ I P + E +++ + ++ +EI +++
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG--WLVEIVNYNVE 1849
Query: 97 GLVRGAHEGQ----GLGNSFLSHIRAVDGIFHVLRAFEDP--DIIHVDDS--VDPVRD 146
Q G +RA+D + +VL + DII + S ++ V
Sbjct: 1850 N-------QQYVAAG-------DLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 33.1 bits (75), Expect = 0.18
Identities = 43/240 (17%), Positives = 78/240 (32%), Gaps = 55/240 (22%)
Query: 111 SFL----SHIRAVDGIFHVLRA-FEDPDIIHVDDSVDPVRDLEVIS-AELRLKDIEFMER 164
L S A L+ F I + + D E + AEL K + ++
Sbjct: 19 VLLVPTASFFIA-----SQLQEQFNK---ILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 165 RIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDV-RLGDWKAADIEILNTFQLLTAK 223
+E + D+ L + L + +L+ G D+ L AA + N L+ K
Sbjct: 71 LVEPSKVG---QFDQVLNL--CLTEFENCYLE-GNDIHAL----AAKLLQENDTTLVKTK 120
Query: 224 PVV--YL---VNMNEKDYQRKKNKFLP-------KIHAWVQEHGGEQ---IIPFSCALE- 267
++ Y+ + ++ + ++ A GG Q F E
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA---IFGG-QGNTDDYFE---EL 173
Query: 268 RNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLIYFFTAGPDEVKCWQIRRQTKAP 327
R+L + L ++I+T A FT G + + W + + P
Sbjct: 174 RDLYQTYHVLVGDLIKF--SAETLSELIRTTLDA---EKVFTQGLN-ILEW-LENPSNTP 226
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 32.0 bits (73), Expect = 0.16
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEAR 65
+ KI G GK+T + ++ + R
Sbjct: 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDER 55
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 32.5 bits (73), Expect = 0.19
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFE 74
+ +VG +GKSTL N+L + E E E V I E
Sbjct: 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVE 68
>2ged_A SR-beta, signal recognition particle receptor beta subunit;
protein transport, G protein, proline isomerization,
circular permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 31.6 bits (72), Expect = 0.21
Identities = 13/46 (28%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA 64
G S I I G N GK++L L + EP A
Sbjct: 43 GGGSYQPSIIIAGPQNSGKTSLLTLL-TTDSVRPTVV--SQEPLSA 85
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell
cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima}
PDB: 3pr1_A
Length = 195
Score = 31.8 bits (73), Expect = 0.21
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 34 NVGKSTLFNTLT--KLA 48
NVGKS+L N L K+A
Sbjct: 33 NVGKSSLLNALFNRKIA 49
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 31.6 bits (72), Expect = 0.25
Identities = 13/51 (25%), Positives = 19/51 (37%)
Query: 5 ASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
+ E G +K +VG VGK++L + T P E P
Sbjct: 1 SMGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIP 51
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 32.0 bits (73), Expect = 0.29
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 118 AVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERR 165
A+ G+ + E PD + D +P + L + L + + RR
Sbjct: 140 ALWGLLRSTQT-EHPDRFVLVDVPEPAQLLPALPGVLACGEPQLALRR 186
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 31.2 bits (71), Expect = 0.37
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 17 ILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKL 47
+L R + + G P GKSTL N L
Sbjct: 11 VLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold,
GTPase, GTP binding, protein binding, signali protein;
HET: GNP; 2.30A {Homo sapiens}
Length = 204
Score = 30.9 bits (70), Expect = 0.43
Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 18/75 (24%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNIPDERFEWLCQLFKP 82
+K +VG VGK+ L + T A P E P T+ N A V + +
Sbjct: 30 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP--TVFDNYSANVMVDGKPVN-------- 79
Query: 83 KSAVPAFLEIHDIAG 97
L + D AG
Sbjct: 80 -------LGLWDTAG 87
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 30.8 bits (69), Expect = 0.47
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 25 LKIGIVGLPNVGKSTLFN-TLTKLAIPAENF 54
+KI I G P VGK+TL + +L A F
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGF 31
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 30.7 bits (70), Expect = 0.55
Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 27 IGIVGLPNVGKSTLFNTLT---KLA 48
I G N GKST N L +LA
Sbjct: 32 IAFAGRSNAGKSTAINVLCNQKRLA 56
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 30.3 bits (69), Expect = 0.60
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 27 IGIVGLPNVGKSTLFNTLT---KLA 48
+ G N GKS+ NTLT LA
Sbjct: 29 VAFAGRSNAGKSSALNTLTNQKSLA 53
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.64
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 71 ERFEWLCQLFKPKSAVPAFLEIH 93
++ + +L+ SA PA L I
Sbjct: 23 KKLQASLKLYADDSA-PA-LAIK 43
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 30.6 bits (69), Expect = 0.67
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 27 IGIVGLPNVGKSTLFNTLTK 46
+GI G+P VGKST L
Sbjct: 82 VGITGVPGVGKSTAIEALGM 101
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 30.1 bits (67), Expect = 0.69
Identities = 15/119 (12%), Positives = 38/119 (31%), Gaps = 4/119 (3%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85
+ + G P VGK+TL + +++ + + P E R R +
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEV-LKSSGVPVDGFYTEEVRQG--GRRIGFDVVTLSGTRG 59
Query: 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPV 144
+ + + G + + + A+ + + + + V D + +
Sbjct: 60 PLSRVGLEPPPGKRECRVGQYVVDLTSFEQL-ALPVLRNADCSSGPGQRVCVIDEIGKM 117
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 30.6 bits (69), Expect = 0.72
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 27 IGIVGLPNVGKSTLFNTLTK 46
+G+ G P GKST K
Sbjct: 77 VGLSGPPGAGKSTFIEYFGK 96
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2,
protein structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 30.5 bits (69), Expect = 0.74
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 27 IGIVGLPNVGKSTLFNTLTK 46
+G+ G P GKST
Sbjct: 59 LGVTGTPGAGKSTFLEAFGM 78
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 30.7 bits (70), Expect = 0.77
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 3 PKASKSKEAPAERPILGRFSSHLKIGIVGLPN-VGKSTLFNTLTKLAIPAE 52
P+ K + G IGIVG PN +GK+T L + P E
Sbjct: 361 PRLVKDYGSFKLEVEPGEIRKGEVIGIVG-PNGIGKTTFVKMLAGVEEPTE 410
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP;
1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A*
1svw_A*
Length = 195
Score = 29.8 bits (68), Expect = 0.79
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 34 NVGKSTLFNTLT---KLA 48
NVGKS+ N+L LA
Sbjct: 33 NVGKSSFINSLINRKNLA 50
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP:
c.37.1.10 PDB: 2qm7_A*
Length = 337
Score = 30.5 bits (69), Expect = 0.80
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 27 IGIVGLPNVGKSTLFNTLTK 46
+GI G+P VGKST + L
Sbjct: 58 VGITGVPGVGKSTTIDALGS 77
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 30.4 bits (69), Expect = 0.88
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 13/79 (16%)
Query: 27 IGIVGLPN-VGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85
IGI+G PN +GK+T L I +E V + + Q P
Sbjct: 297 IGILG-PNGIGKTTFARILVGE-----------ITADEGSVTPEKQILSYKPQRIFPNYD 344
Query: 86 VPAFLEIHDIAGLVRGAHE 104
+ + +
Sbjct: 345 GTVQQYLENASKDALSTSS 363
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.0
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 152 AELRL---KDI-EFMERRIEDVEKSMK--RSNDKQLKIEHE 186
E R KD+ E+ +R+ E VEK+ R DK + +
Sbjct: 110 QEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 29.7 bits (66), Expect = 1.2
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 24 HLKIGIVGLPNVGKSTLFNTL--TKLAIPAENFPFCTIEPNEARVNIPDERFE 74
+ +VG +GKSTL N+L T L P P I+ E
Sbjct: 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE 60
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 29.8 bits (68), Expect = 1.2
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 3/20 (15%)
Query: 29 IVGL--PN-VGKSTLFNTLT 45
+ + PN GKSTL N +T
Sbjct: 35 VTLIIGPNGSGKSTLINVIT 54
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 29.6 bits (67), Expect = 1.3
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 18 LGRFSSHLKIGIVGLPNVGKSTLFNTL 44
LG + K+ +GL N GK+TL + L
Sbjct: 19 LGLYKKTGKLVFLGLDNAGKTTLLHML 45
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP:
c.37.1.8
Length = 194
Score = 29.4 bits (66), Expect = 1.3
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 6/53 (11%)
Query: 3 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
P A +S A + LK +VG VGK+ L + A P E P
Sbjct: 3 PGAGRSSMAHGPGAL------MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVP 49
>3llu_A RAS-related GTP-binding protein C; structural genomics
consortium, SGC, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens}
PDB: 2q3f_A*
Length = 196
Score = 29.6 bits (66), Expect = 1.3
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAE-NFPFCTIEPNEARVN 67
+I ++GL GKS++ + P E F T + + ++
Sbjct: 22 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDIS 64
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 29.4 bits (67), Expect = 1.4
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 13 AERPILGRFSSHLK----IGIVGLPN-VGKSTLFNTLTKL 47
AE LG S ++ + +VG PN GKSTL + +
Sbjct: 11 AESTRLGPLSGEVRAGEILHLVG-PNGAGKSTLLARMAGM 49
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 29.6 bits (66), Expect = 1.5
Identities = 7/43 (16%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAE-NFPFCTIEPNEARVN 67
K+ ++G GKS++ + + + TI+ + +
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLR 47
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like
protein 1A, GTPase, membrane fission, motor Pro; HET:
GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Length = 360
Score = 29.4 bits (66), Expect = 1.5
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEAR-VNIPDERFEWLCQLFKPKS 84
I +VG + GKS++ ++ T P + I D E+ L P+
Sbjct: 36 AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRK 95
Query: 85 AVPAFLEIHDIAGLVRGAHEGQGLGNS 111
F + G+ S
Sbjct: 96 KFTDFAAVRKEIQDETDRETGRSKAIS 122
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 29.5 bits (67), Expect = 1.6
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 12 PAERPILGRFSSHLK----IGIVGLPN-VGKSTLFNTLTKLAIPAE 52
AE + + + L + ++G N GKSTL + L + P +
Sbjct: 15 QAENFLFQQLNFDLNKGDILAVLG-QNGCGKSTLLDLLLGIHRPIQ 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 30.0 bits (67), Expect = 1.6
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 6/47 (12%)
Query: 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARV 66
R + GI G GKSTL + + + FP E R
Sbjct: 457 RLKRARRYGICGPNGCGKSTLMRAIANGQV--DGFPT----QEECRT 497
Score = 29.6 bits (66), Expect = 1.7
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 12 PAERPILGRFSSHL----KIGIVGLPNVGKSTLFNTLTKLAIPAE 52
+P + + +I ++G GKSTL N LT +P
Sbjct: 683 GTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 727
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 29.2 bits (66), Expect = 1.6
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
+ + LKI +VG VGK+ L +K IP P
Sbjct: 9 DMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVP 54
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 29.2 bits (65), Expect = 1.7
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNTLT 45
+S L+I +VG GKS N++
Sbjct: 27 NSQLRIVLVGKTGAGKSATGNSIL 50
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C
...
Length = 186
Score = 29.0 bits (65), Expect = 1.8
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP------FCTIEPNEARVNIP------DE 71
+K +VG VGK+ L + T A P E P + + VN+ E
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 72 RFEWLCQLFKPKSAV 86
++ L L P++ V
Sbjct: 65 DYDRLRPLSYPQTDV 79
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 29.0 bits (65), Expect = 1.9
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 29 IVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA 64
I G N GK++L L + EP A
Sbjct: 17 IAGPQNSGKTSLLTLL-TTDSVRPTVV--SQEPLSA 49
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 28.7 bits (65), Expect = 2.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 18 LGRFSSHLKIGIVGLPNVGKSTLFNTL 44
LG ++ H K+ +GL N GK+TL + L
Sbjct: 17 LGLWNKHGKLLFLGLDNAGKTTLLHML 43
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 28.9 bits (64), Expect = 2.4
Identities = 22/128 (17%), Positives = 39/128 (30%), Gaps = 14/128 (10%)
Query: 47 LAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQ 106
A PF T+ + + F+ +L A+ + G R A
Sbjct: 51 PWAGANWTPFMTLTDGPRQAKWEESTFKKWVELVPTGHAM-------WLKGTRRFAQNED 103
Query: 107 GLGNSFLSHIRAVDGIFHVLRAFEDPDIIH----VDDSVDPVRDLEVISAELRLKDIEFM 162
GL + + L + E P SV + + ++ EL+ F
Sbjct: 104 GLLGHWYK--DITPN-YRPLPSSECPPGAIGVTYDTLSVHAPKYCQYLARELQKLGATFE 160
Query: 163 ERRIEDVE 170
R + +E
Sbjct: 161 RRTVTSLE 168
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 28.7 bits (64), Expect = 2.5
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
K+ +VG GK+ + L K P P
Sbjct: 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVP 58
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET:
GDP; 1.78A {Arabidopsis thaliana}
Length = 212
Score = 28.5 bits (64), Expect = 2.5
Identities = 18/77 (23%), Positives = 26/77 (33%), Gaps = 18/77 (23%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN-EARVNIPDERFEWLCQLF 80
S +K VG VGK+ + T P + P T+ N A V + +
Sbjct: 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIP--TVFDNFSANVAVDGQIVN------ 58
Query: 81 KPKSAVPAFLEIHDIAG 97
L + D AG
Sbjct: 59 ---------LGLWDTAG 66
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 28.5 bits (63), Expect = 2.5
Identities = 26/179 (14%), Positives = 56/179 (31%), Gaps = 16/179 (8%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85
I I G P GK+++ + ++ + D + K +
Sbjct: 12 NILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDR 71
Query: 86 VPAFLE--IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIH---VDDS 140
+ F+E + V H +S L R + VL +++
Sbjct: 72 LLDFMEPIMVSRGNHVVDYH------SSELFPERWFHMVV-VLHT--STEVLFERLTKRQ 122
Query: 141 VDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGK 199
+ E + AE+ E R + + + R ND ++ + ++ ++ K
Sbjct: 123 YSEAKRAENMEAEI-QCICEEEARDAYEDDIVLVRENDTLEQMA-ATVEEIRERVEVLK 179
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 28.9 bits (64), Expect = 3.0
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 6 SKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTK----LAIPAENFPFCTIEP 61
+ + +S I +VGLP GK+ + LT+ + +P + F
Sbjct: 17 VDHRPSLPRSCGPKLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRR 76
Query: 62 NEARVNIPDERF 73
+ F
Sbjct: 77 EAVKQYSSYNFF 88
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 28.5 bits (63), Expect = 3.1
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 10 EAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTL 44
+ + + S ++ +VG GKS N++
Sbjct: 7 HSSGRENLYFQGESTRRLILVGRTGAGKSATGNSI 41
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 28.1 bits (62), Expect = 3.1
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKL 47
+ + G+P VG +T
Sbjct: 5 VVVVTGVPGVGSTTSSQLAMDN 26
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 27.8 bits (61), Expect = 4.1
Identities = 27/159 (16%), Positives = 45/159 (28%), Gaps = 19/159 (11%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLA----IPAENFPFCTIEPNEA----RVNIPDERFEWLC 77
+ G+P VGKST+ + ++ I + + A DE + L
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRK-LS 61
Query: 78 QLFKPKSAVPAFLEIHDIAGLVRGA----------HEGQGLGNSFLSHIRAVDGIFHVLR 127
+ K + A I + A G S++ +
Sbjct: 62 VEKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFL 121
Query: 128 AFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRI 166
DP II D R+ S E + + R
Sbjct: 122 LEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYA 160
>1sbf_A Soybean agglutinin; lectin; HET: NAG GAL; 2.43A {Glycine max} SCOP:
b.29.1.1 PDB: 1sbd_A* 1sbe_A* 1g9f_A* 2sba_A*
Length = 253
Score = 28.2 bits (62), Expect = 4.2
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 2/63 (3%)
Query: 105 GQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMER 164
GL N S + V F R DP H+ ++ + + L + + +
Sbjct: 107 YLGLFNENESGDQVVAVEFDTFRNSWDPPNPHI--GINVNSIRSIKTTSWDLANNKVAKV 164
Query: 165 RIE 167
I
Sbjct: 165 LIT 167
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 28.4 bits (62), Expect = 4.4
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNE 63
++ ++G GKST N L + + CT
Sbjct: 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTV 108
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC
transporter, nucleotide binding domain, NBD; HET: B44;
2.70A {Homo sapiens}
Length = 390
Score = 28.1 bits (63), Expect = 4.6
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPA 51
S ++G++G GKSTL + +L
Sbjct: 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE 74
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 27.7 bits (62), Expect = 4.7
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
+K VG VGK+ L + T P + P
Sbjct: 8 FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVP 39
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 27.8 bits (62), Expect = 4.8
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
K+ +VG GK+ L +K P P
Sbjct: 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVP 56
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 27.4 bits (61), Expect = 4.9
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
KI +VG GK+ L + K P P
Sbjct: 8 CKIVVVGDSQCGKTALLHVFAKDCFPENYVP 38
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A*
3p1j_A
Length = 260
Score = 27.7 bits (61), Expect = 5.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNTL 44
S L+I +VG GKS N++
Sbjct: 20 RSELRIILVGKTGTGKSAAGNSI 42
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics,
PSI, protein structure initiative, southeast COLL for
structural genomics; 1.65A {Pyrococcus furiosus} SCOP:
d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A*
3rl6_A*
Length = 294
Score = 27.6 bits (62), Expect = 5.9
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 127 RAF---EDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIED 168
R F E D + P EV S R + E + +I
Sbjct: 191 REFYDREVDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRK 235
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 27.0 bits (60), Expect = 6.8
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
K+ IVG GK+ L +K P P
Sbjct: 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP 56
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 27.2 bits (61), Expect = 6.8
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTL 44
++ R S K+ IVGL N GK+T+
Sbjct: 14 LVPRGSQEHKVIIVGLDNAGKTTILYQF 41
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal
transducing protein, cyclase, effector enzyme; HET: GSP
FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB:
1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C*
1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C*
3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 27.5 bits (60), Expect = 6.9
Identities = 12/62 (19%), Positives = 25/62 (40%)
Query: 20 RFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQL 79
+ + ++ ++G GKST+ + L + N +P AR N E+ + +
Sbjct: 36 VYRATHRLLLLGAGESGKSTIVKQMRILHVNGFNGEGGEEDPQAARSNSDGEKATKVQDI 95
Query: 80 FK 81
Sbjct: 96 KN 97
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 27.3 bits (61), Expect = 7.4
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 14/63 (22%)
Query: 25 LKIGIVGLPNVGKSTL--------FNTLTKLAIPAENFPFCTIEPNEARV--NIPD---- 70
KI ++G VGK+T F + A N P ++ + N+ D
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 71 ERF 73
E+
Sbjct: 72 EKK 74
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 26.8 bits (60), Expect = 7.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 17 ILGRFSSHLKIGIVGLPNVGKSTLFNTL 44
++ R S + + +GL N GK+T+ N L
Sbjct: 14 LVPRGSKEVHVLCLGLDNSGKTTIINKL 41
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus}
SCOP: c.37.1.8
Length = 205
Score = 27.0 bits (60), Expect = 7.8
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
KI +VG GK+ L + K P P
Sbjct: 28 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVP 59
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 26.8 bits (60), Expect = 8.1
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 25 LKIGIVGLPNVGKSTLFNTL 44
++I +VGL GK+T+ L
Sbjct: 1 MRILMVGLDAAGKTTILYKL 20
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 26.9 bits (59), Expect = 8.2
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 27 IGIVGLPNVGKSTLFNTLTKL 47
+VG + GK+TL
Sbjct: 7 WQVVGYKHSGKTTLMEKWVAA 27
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease,
LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation,
GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo
sapiens} PDB: 3d6t_B*
Length = 184
Score = 26.9 bits (60), Expect = 8.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTK 46
+ +K+ IVG GK+TL L K
Sbjct: 1 NRMKLMIVGNTGSGKTTLLQQLMK 24
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding,
methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A
{Homo sapiens}
Length = 214
Score = 26.7 bits (59), Expect = 9.8
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFP 55
+K+ +VG GK++L A P P
Sbjct: 34 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTP 65
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.418
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,572,613
Number of extensions: 341696
Number of successful extensions: 1100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1067
Number of HSP's successfully gapped: 141
Length of query: 350
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 256
Effective length of database: 4,077,219
Effective search space: 1043768064
Effective search space used: 1043768064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)