RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 018809
(350 letters)
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 308 bits (789), Expect = e-105
Identities = 105/280 (37%), Positives = 173/280 (61%), Gaps = 5/280 (1%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
K GIVGLPNVGKSTLFN LTK I A N+PFCTIEPN V +PD R + L ++ KP+
Sbjct: 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPER 62
Query: 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPV 144
+P +E DIAGLV GA +G+GLGN FL++IR D I HV+R FE+ DI+HV +DP+
Sbjct: 63 ILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPL 122
Query: 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKDVRLG 204
D++ I+ EL L D++ ER I+ ++K + DK+ K E + +++ L++ +R
Sbjct: 123 DDIDTINTELALADLDSCERAIQRLQK-RAKGGDKEAKFELSVMEKILPVLENAGMIRSV 181
Query: 205 DWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIHAWVQEHGGEQIIPFSC 264
+++ + ++ LT KP +Y+ N+NE + + N +L ++ + G ++P
Sbjct: 182 GLDKEELQAIKSYNFLTLKPTMYIANVNEDGF--ENNPYLDRVREIAAKEGAV-VVPVCA 238
Query: 265 ALERNLADMPPDEAAKYCEENKVQ-SALPKIIKTGFSAIN 303
A+E +A++ +E ++ ++ ++ L ++I+ G++ +N
Sbjct: 239 AIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLN 278
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 255 bits (651), Expect = 3e-84
Identities = 141/296 (47%), Positives = 201/296 (67%), Gaps = 7/296 (2%)
Query: 15 RPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIP-AENFPFCTIEPNEARVNIPDERF 73
+ GR ++LK GIVG+PNVGKST F +TK + N+P+ TI+P EA+V +PDERF
Sbjct: 1 KVQWGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERF 60
Query: 74 EWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPD 133
+WLC+ +KPKS VPAFL + DIAGL +GA G GLGN+FLSH+RAVD I+ V+RAF+D +
Sbjct: 61 DWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAE 120
Query: 134 IIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHEL-----C 188
IIHV+ VDP+RDL +I EL +KD EF+E+ +E + K R + +
Sbjct: 121 IIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEMKAKKEEQAIIE 180
Query: 189 QRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIH 248
+ + + + +R GDW ++EI+N+ LLTAKPV+YLVNM+E+D+ R+KNK+LPKI
Sbjct: 181 KVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDFLRQKNKYLPKIK 240
Query: 249 AWVQEHG-GEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAIN 303
W+ E+ G+ +IP S A E L + +EA + C++ +S LPKII TG++A+N
Sbjct: 241 KWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALN 296
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 205 bits (521), Expect = 2e-64
Identities = 79/313 (25%), Positives = 122/313 (38%), Gaps = 27/313 (8%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVN-IPDERFEWLCQLFKPK 83
++IG+VG PNVGKST F+ T + + N+PF TIE N I D + L P+
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQ 60
Query: 84 ------SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDI-IH 136
+++ D+AGLV GAHEG+GLGN FL +R + HV+ A D
Sbjct: 61 NYEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQ 120
Query: 137 VDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRV----- 191
D DPV D+E + E+ + + + K +K K E +
Sbjct: 121 PTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNEN 180
Query: 192 ---KAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKIH 248
+A + W D+ + KP+V N + + + + +
Sbjct: 181 DVWEAMHKLNLPEDPTKWSQDDLLAFASEIRRVNKPMVIAANKADAASDEQIKRLVRE-- 238
Query: 249 AWVQEHGGEQIIPFSCALERNLADMPPDEAAKYCEENKVQSALPKIIKTGFSAINLI--- 305
+E G +IP S A E L +Y L + + A+ +I
Sbjct: 239 ---EEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEK 295
Query: 306 ---YFFTAGPDEV 315
F + G EV
Sbjct: 296 VLDRFGSTGVQEV 308
>d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 85
Score = 83.2 bits (206), Expect = 8e-21
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 304 LIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVVAC 349
L +FTAG EV+ W + AP+AA IHTDFE+GFI AEV+A
Sbjct: 1 LQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEKGFIRAEVIAY 46
>d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 82
Score = 79.4 bits (196), Expect = 2e-19
Identities = 27/46 (58%), Positives = 34/46 (73%)
Query: 304 LIYFFTAGPDEVKCWQIRRQTKAPQAAGTIHTDFERGFICAEVVAC 349
LI +FT G DEV+ W IR+ TKAPQAAG IHTDFE+ F+ E++
Sbjct: 1 LINYFTCGEDEVRSWTIRKGTKAPQAAGVIHTDFEKAFVVGEIMHY 46
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 80.4 bits (197), Expect = 1e-18
Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 16/174 (9%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
+G+VG P+VGKSTL + ++ ++ F T+ PN V D R
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGR-------------- 49
Query: 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRD 146
+ D+ GL+ GAH+G GLG+ FL HI I HV+ DD + ++
Sbjct: 50 --SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQE 107
Query: 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200
L + L + + +++ E + K+ + + A ++G
Sbjct: 108 LSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLR 161
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 75.5 bits (184), Expect = 7e-17
Identities = 41/174 (23%), Positives = 68/174 (39%), Gaps = 20/174 (11%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
+G+VG PN GKS+L +T+ +PF T+ PN V + +E
Sbjct: 4 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEE-------------- 49
Query: 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRD 146
+ DI G++ GA EG+GLG FL HI + +VL A ++P +
Sbjct: 50 --RFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAY 107
Query: 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQDGKD 200
+ + +++ +E+ ++ L E V A G
Sbjct: 108 DPAL----LRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLP 157
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 55.8 bits (133), Expect = 4e-10
Identities = 29/114 (25%), Positives = 39/114 (34%), Gaps = 18/114 (15%)
Query: 25 LKIGIVGLPNVGKSTLFNTLT--KLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKP 82
L++ IVG PNVGKSTL N L AI + P T + + I F
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAI-VTDIPGTTRDVISEEIVIRGILFRI------- 52
Query: 83 KSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIH 136
++ + E G+ L I D + VL A D
Sbjct: 53 -------VDTAGVRSETNDLVERLGI-ERTLQEIEKADIVLFVLDASSPLDEED 98
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 48.9 bits (115), Expect = 1e-07
Identities = 28/165 (16%), Positives = 47/165 (28%), Gaps = 15/165 (9%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
I G NVGKSTL LT + P T R + K
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT-------------RKIIEIEWKNHKIID 49
Query: 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRD 146
+ + + + +D V+ P+II + +
Sbjct: 50 MPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPI 109
Query: 147 LEVISAELRLKDIEFME--RRIEDVEKSMKRSNDKQLKIEHELCQ 189
LR DI + +++ ++ + N K E L +
Sbjct: 110 DVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSE 154
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 45.8 bits (107), Expect = 1e-06
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWL 76
+ +K+ IVG PNVGKSTLFN + P T +P + V I ++ ++
Sbjct: 6 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFV 61
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 45.5 bits (106), Expect = 2e-06
Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 8/72 (11%)
Query: 5 ASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEA 64
A + P++ I ++ G N GKS+ NTLT A
Sbjct: 5 APDIRHLPSDTGI--------EVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN 56
Query: 65 RVNIPDERFEWL 76
+ D +
Sbjct: 57 LFEVADGKRLVD 68
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 43.9 bits (102), Expect = 6e-06
Identities = 16/36 (44%), Positives = 17/36 (47%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN 62
I IVG PNVGKSTL N L I + T
Sbjct: 8 IAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHR 43
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 43.6 bits (101), Expect = 6e-06
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 25 LKIGIVGLPNVGKSTLFNTLT--KLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
+K+ I G PN GKS+L N L + AI + T + ++I +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAI-VTDIAGTTRDVLREHIHIDGMPLHIIDT 56
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 43.6 bits (102), Expect = 1e-05
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 3 PKASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLT--KLAIPAENFPFCTIE 60
A+++K + + L I ++G VGKS+ N++ ++ F
Sbjct: 11 APATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVS-ISPFQSEGPR 69
Query: 61 PNEARVNIPDERFEWLC 77
P + +
Sbjct: 70 PVMVSRSRAGFTLNIID 86
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 42.4 bits (98), Expect = 2e-05
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEWLCQ 78
+ IVG PNVGKSTLFN L K E+ T +P + V + F+ +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDT 55
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 40.8 bits (94), Expect = 9e-05
Identities = 23/209 (11%), Positives = 58/209 (27%), Gaps = 18/209 (8%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFK 81
S I I G N GK++L LT P + + + +
Sbjct: 1 SYQPSIIIAGPQNSGKTSLLTLLTT----DSVRPTVVSQEPLSAADYDGSGVTLVDFPGH 56
Query: 82 PK------SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDP--- 132
K + + + + + + + I
Sbjct: 57 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 116
Query: 133 --DIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQR 190
+ + + P + + + +E++ K IE ++ + +VE+ + + + ++
Sbjct: 117 ACNKSELFTARPPSKIKDALESEIQ-KVIERRKKSLNEVERKINEEDYAENTLDVLQSTD 175
Query: 191 VKAW--LQDGKDVRLGDWKAADIEILNTF 217
+ L+ G I +
Sbjct: 176 GFKFANLEASVVAFEGSINKRKISQWREW 204
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 40.5 bits (93), Expect = 1e-04
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEW 75
+ IVG PNVGKSTL N L + + P P T + + + +
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVF 57
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 40.2 bits (93), Expect = 1e-04
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 15/73 (20%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
KI ++G VGK+ L T+ P ++ V I E+ +
Sbjct: 6 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVK---------- 55
Query: 85 AVPAFLEIHDIAG 97
L+I D AG
Sbjct: 56 -----LQIWDTAG 63
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 39.0 bits (90), Expect = 2e-04
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 15/73 (20%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
+KI ++G VGKS L + I+ V+I ++ +
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVK---------- 52
Query: 85 AVPAFLEIHDIAG 97
L+I D AG
Sbjct: 53 -----LQIWDTAG 60
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 39.6 bits (91), Expect = 2e-04
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC 77
+ VGL + GK+ LF L + +I + A + + R L
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLT-GQYRDTQT--SITDSSAIYKVNNNRGNSLT 50
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 37.8 bits (87), Expect = 7e-04
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 15/73 (20%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
K+ ++G VGK+ + ++ A + I+ + + +R +
Sbjct: 7 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIK---------- 56
Query: 85 AVPAFLEIHDIAG 97
L+I D AG
Sbjct: 57 -----LQIWDTAG 64
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 38.6 bits (89), Expect = 8e-04
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNTLTKL 47
SS L + + G GKS+ NTL +
Sbjct: 54 SSVLNVAVTGETGSGKSSFINTLRGI 79
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 37.8 bits (86), Expect = 9e-04
Identities = 20/94 (21%), Positives = 28/94 (29%), Gaps = 10/94 (10%)
Query: 5 ASKSKEAPAERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAEN--FPFCTIEPN 62
A K ++ P +I + G NVGKS+ N+L A P T N
Sbjct: 12 AVKPEQYPEGGLP--------EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLN 63
Query: 63 EARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIA 96
+N + F S I
Sbjct: 64 FYIINDELHFVDVPGYGFAKVSKSEREAWGRMIE 97
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 37.2 bits (85), Expect = 0.001
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 15/73 (20%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
KI I+G +VGK++ + I+ + D+R +
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIK---------- 55
Query: 85 AVPAFLEIHDIAG 97
L+I D AG
Sbjct: 56 -----LQIWDTAG 63
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 37.0 bits (84), Expect = 0.001
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTI 59
+++ +VGL GK+T N + + P
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGF 37
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 37.0 bits (84), Expect = 0.001
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 18 LGRFSSHLKIGIVGLPNVGKSTLFNTLTK 46
LG + K+ +GL N GK+TL + L
Sbjct: 7 LGLYKKTGKLVFLGLDNAGKTTLLHMLKD 35
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 36.6 bits (83), Expect = 0.001
Identities = 12/54 (22%), Positives = 19/54 (35%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
++I +VGL GK+T+ L I NI ++ Q
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 54
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 36.8 bits (84), Expect = 0.002
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW 75
K+ ++G VGKS L + T+ E+ +E + + + +
Sbjct: 5 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 55
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 36.6 bits (83), Expect = 0.002
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK 46
++I I+GL GK+T+ L
Sbjct: 6 MRILILGLDGAGKTTILYRLQV 27
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 36.2 bits (82), Expect = 0.002
Identities = 11/54 (20%), Positives = 23/54 (42%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
+K+ +VG VGKS++ K + ++ E ++ + DE +
Sbjct: 3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLW 56
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 36.2 bits (82), Expect = 0.002
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK 46
L++ ++GL N GK+T+
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNG 24
>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal
domain {Methanococcus maripaludis [TaxId: 39152]}
Length = 179
Score = 35.8 bits (81), Expect = 0.003
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLA 48
++ +GI G + GK+TL LT++A
Sbjct: 5 NINLGIFGHIDHGKTTLSKVLTEIA 29
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 36.4 bits (83), Expect = 0.004
Identities = 19/130 (14%), Positives = 36/130 (27%), Gaps = 1/130 (0%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85
+I +VG + GKS++ T P ++ + K
Sbjct: 28 QIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFT 87
Query: 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVR 145
+ + A R +G+ + ++R L + P + V P
Sbjct: 88 DFEEVRLEIEAETDRVTGTNKGISPVPI-NLRVYSPHVLNLTLVDLPGMTKVPVGDQPPD 146
Query: 146 DLEVISAELR 155
I L
Sbjct: 147 IEFQIRDMLM 156
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 35.6 bits (81), Expect = 0.004
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC 77
LKI I+G VGKS+L T E ++ +++ + +
Sbjct: 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAI 60
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 35.1 bits (79), Expect = 0.005
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 26 KIGIVGLPNVGKSTLFNTLTK 46
K+ +GL N GK+TL + L
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKN 22
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 35.2 bits (80), Expect = 0.005
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
K I+G VGKS L + T+ A+ +E + + ++ +
Sbjct: 5 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIW 58
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 35.0 bits (79), Expect = 0.006
Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 16/118 (13%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPK- 83
+KI I G P VGK+TL + + + + R + +
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVER-----------LGKRAIGFWTEEVRDPETKKRTGFRI 49
Query: 84 ---SAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVD 138
G + I ++ + + +I +D
Sbjct: 50 ITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKD-RRKVIIID 106
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 34.5 bits (78), Expect = 0.007
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTK 46
++I ++GL N GK+TL L
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLAS 38
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 34.8 bits (79), Expect = 0.009
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 15/73 (20%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
K+ ++G VGKS L + + ++ V + + +
Sbjct: 7 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVK---------- 56
Query: 85 AVPAFLEIHDIAG 97
L+I D AG
Sbjct: 57 -----LQIWDTAG 64
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 34.2 bits (77), Expect = 0.009
Identities = 14/54 (25%), Positives = 21/54 (38%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
KI ++G NVGK+ L P ++ E V+I ER +
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLW 56
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 34.1 bits (77), Expect = 0.011
Identities = 21/159 (13%), Positives = 48/159 (30%), Gaps = 9/159 (5%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKS 84
+K+ +G VGK+T T + I+ E RV +
Sbjct: 6 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65
Query: 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPV 144
L++ D A G + L +F +F + ++ + +
Sbjct: 66 -----LQLWDTA----GQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 116
Query: 145 RDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKI 183
E L + ++R + ++ + ++ +
Sbjct: 117 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPY 155
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 33.9 bits (76), Expect = 0.012
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW 75
LK+ I+G VGK++L + + + V + ++
Sbjct: 3 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVAT 53
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 33.5 bits (75), Expect = 0.018
Identities = 11/54 (20%), Positives = 18/54 (33%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
LK+ I+G VGK++L N + + V + D
Sbjct: 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIW 56
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 33.4 bits (75), Expect = 0.019
Identities = 8/51 (15%), Positives = 19/51 (37%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW 75
K ++G GKS L + + ++ +E +N+ + +
Sbjct: 6 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKL 56
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 33.4 bits (75), Expect = 0.027
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 27 IGIVGLPNVGKSTLFNTLTK 46
I +VGLP GK+ + LT+
Sbjct: 5 IVMVGLPARGKTYISKKLTR 24
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 33.1 bits (74), Expect = 0.029
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK 46
K+ IVGL N GK+T+ +
Sbjct: 16 HKVIIVGLDNAGKTTILYQFSM 37
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 32.7 bits (73), Expect = 0.036
Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 2/58 (3%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKP 82
K+ IVG GK+ L +K P P T+ N D + L
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVP--TVFENYVADIEVDGKQVELALWDTA 58
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 32.8 bits (74), Expect = 0.038
Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 21 FSSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW 75
+ + ++ ++G GKST+ + L + T E + + F
Sbjct: 3 YRATHRLLLLGAGESGKSTIVKQMRILHVVL------TSGIFETKFQVDKVNFHM 51
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 32.3 bits (72), Expect = 0.049
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLA----IPAENFPFCTIEPNEARVNIPDERFEW 75
L+I I+GL GK+T+ L P F T+ ++N+ D +
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQT 72
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 32.2 bits (72), Expect = 0.049
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPN 62
+K+ ++G GKST+ + +
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFK 40
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 31.9 bits (71), Expect = 0.059
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
LK+ ++G VGKS++ + + P V +E ++L
Sbjct: 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIW 58
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 31.9 bits (72), Expect = 0.066
Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 20/166 (12%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-----FEWLCQ 78
H+ +G +G + GK+TL +TK+ + E N P+ER
Sbjct: 3 HVNVGTIGHVDHGKTTLTAAITKI---LAEGGGAKFKKYEEIDNAPEERARGITINAAHV 59
Query: 79 LFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIF-----HVLRAFEDPD 133
+ + A + A V+ G + + + A DG H+L A +
Sbjct: 60 EYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGV 119
Query: 134 I-----IHVDDSVDPVRDLEVISAELR--LKDIEFMERRIEDVEKS 172
++ D+V +E++ E+R L + + + S
Sbjct: 120 EHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGS 165
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 31.8 bits (71), Expect = 0.067
Identities = 13/54 (24%), Positives = 19/54 (35%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
K I+G VGKS L T + +E VNI ++ +
Sbjct: 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIW 57
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 31.8 bits (71), Expect = 0.069
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
K+ ++G VGK++L + ++ ++NI +R
Sbjct: 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIW 57
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 31.5 bits (70), Expect = 0.083
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLC 77
+K +VG VGK+ L + T P+E P T+ N A + L
Sbjct: 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVP--TVFDNYAVTVMIGGEPYTLG 54
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 31.8 bits (71), Expect = 0.085
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW 75
+KI ++G GKST L ++ I P T +E I + F+
Sbjct: 3 VKILLLGAGESGKSTF---LKQMRIIHGQDP--TKGIHEYDFEIKNVPFKM 48
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 32.0 bits (71), Expect = 0.086
Identities = 30/195 (15%), Positives = 58/195 (29%), Gaps = 27/195 (13%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAE---------NFPFCTIEPNEARVNIPDERFEWLC 77
+ ++G + GK+TL + + A+ + ++ E ++F
Sbjct: 8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRE 67
Query: 78 QLFKPKSAVPAFLE-----------IHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVL 126
L E + D+A L+ +EG +I + V+
Sbjct: 68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVV 127
Query: 127 RAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHE 186
A D IH + +E S + + + E V K + E E
Sbjct: 128 -AANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLH------EEGFESE 180
Query: 187 LCQRVKAWLQDGKDV 201
RV + +
Sbjct: 181 RFDRVTDFASQVSII 195
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 32.1 bits (72), Expect = 0.096
Identities = 41/223 (18%), Positives = 73/223 (32%), Gaps = 9/223 (4%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEAR------VNIPDERFEWLCQL 79
+I +VG + GKS++ + T P + + + EW L
Sbjct: 26 QIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFL 85
Query: 80 FKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFED-PDIIHVD 138
KP F EI + G+ G S + V D P I V
Sbjct: 86 HKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVP 145
Query: 139 DSVDPVRDLEVISAELRLKDIEFMERRI-EDVEKSMKRSNDKQLKIEHELCQRVKAWLQD 197
D D+E + + I+ I + +N L++ E+ K +
Sbjct: 146 VG-DQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGV 204
Query: 198 GKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKK 240
+ L D +E+L + + ++N +++D KK
Sbjct: 205 ITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKK 247
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 31.4 bits (70), Expect = 0.097
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCT 58
K+ +VG VGK+ L A A F
Sbjct: 7 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTV 40
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 31.1 bits (69), Expect = 0.10
Identities = 10/53 (18%), Positives = 17/53 (32%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
K+ ++G VGKS+L K V + D ++
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIW 60
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 31.4 bits (71), Expect = 0.12
Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 18/115 (15%)
Query: 15 RPILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKLAIPAE-----------NFPFCTI 59
P+L + +++ + I G GK++L + +E F I
Sbjct: 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWI 108
Query: 60 EPNEARVNIPDERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLS 114
P + NI F ++ KS V A DI + G G LS
Sbjct: 109 MPGTIKENI---IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLS 160
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 31.1 bits (69), Expect = 0.12
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
K+ +G +VGK++L + I+ + + D
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 54
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 31.2 bits (69), Expect = 0.12
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK 46
+K+ ++G VGKS++
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVS 25
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 31.7 bits (71), Expect = 0.12
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKL 47
L++G+ G P GKST L
Sbjct: 55 LRLGVTGTPGAGKSTFLEAFGML 77
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 30.7 bits (68), Expect = 0.14
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
SS K+ ++G VGKS+L N + F +E + +
Sbjct: 4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW 60
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 30.7 bits (68), Expect = 0.14
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 27 IGIVGLPNVGKSTLFNTLTK 46
+ GK+TL L
Sbjct: 5 LAFAAWSGTGKTTLLKKLIP 24
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 30.8 bits (68), Expect = 0.15
Identities = 7/53 (13%), Positives = 16/53 (30%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
K+ +VG GK+T + +E + + ++
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVW 57
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 30.7 bits (68), Expect = 0.16
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 21 FSS-HLKIGIVGLPNVGKSTLFNTLT 45
F + ++I ++GL GK+T+ L
Sbjct: 8 FGNKEMRILMLGLDAAGKTTILYKLK 33
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 30.5 bits (67), Expect = 0.17
Identities = 12/57 (21%), Positives = 21/57 (36%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKP 82
++ ++G VGKSTL N + ++ E R + D + L
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMW 61
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 30.3 bits (67), Expect = 0.18
Identities = 8/53 (15%), Positives = 14/53 (26%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
++ + G VGKS+L K P + +
Sbjct: 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITD 56
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 30.7 bits (68), Expect = 0.19
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK 46
LK+ ++G GKST +
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRI 24
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 30.4 bits (67), Expect = 0.23
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 23 SHLKIGIVGLPNVGKSTLFNTLTK 46
+ +K+ I G VGKS L
Sbjct: 1 AEVKLAIFGRAGVGKSALVVRFLT 24
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 30.3 bits (67), Expect = 0.26
Identities = 26/251 (10%), Positives = 70/251 (27%), Gaps = 13/251 (5%)
Query: 14 ERPILGRFSSHLKIGI--VGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDE 71
E I G+ + G P GK++L + + + + N +
Sbjct: 20 EELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE-ETQGNVIVIDNDTFKQQHPNFDEL 78
Query: 72 RFEWLCQLFKPKSAV---PAFLEIHDIAGLVRGAHEGQGLGNS-----FLSHIRAVDGIF 123
+ + K + I ++ + + ++A
Sbjct: 79 VKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYET 138
Query: 124 HVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKI 183
+ ++ R + + ++++ +++ + L
Sbjct: 139 KMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFS 198
Query: 184 EHELCQRVKAWLQDGKDVRLGDWKAADIEILNTFQLLTAKPVVYLVNMNEKDYQRKKNKF 243
+ L R L + K + LN + ++ K + + E+ K++
Sbjct: 199 DIRLYNREGVKLYSSLETPSISPKETLEKELN--RKVSGKEIQPTLERIEQKMVLNKHQE 256
Query: 244 LPKIHAWVQEH 254
P+ A Q+
Sbjct: 257 TPEFKAIQQKL 267
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 30.1 bits (66), Expect = 0.28
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 26 KIGIVGLPNVGKSTLFNTLTK 46
K+ ++G P VGKS L
Sbjct: 3 KVLLLGAPGVGKSALARIFGG 23
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 30.0 bits (66), Expect = 0.28
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
LK +VG VGK+ L + A P E + + V + +++
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFP-EEYVPTVFDHYAVSVTVGGKQYLLGLY 62
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 29.9 bits (66), Expect = 0.30
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFC 57
K+ +VG VGKS L + P
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK 37
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 29.7 bits (65), Expect = 0.32
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 22 SSHLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
S KI I+G +VGKS+L + +++ + + + +
Sbjct: 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFV-DSYDPTIENTFTKLITVNGQEYHLQLV 57
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 29.6 bits (65), Expect = 0.35
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFC 57
+K +VG VGK+ L + T A P E P
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 38
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 29.6 bits (65), Expect = 0.39
Identities = 27/141 (19%), Positives = 46/141 (32%), Gaps = 5/141 (3%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKP-KS 84
K+ +VG VGKS L L + E P IE + + + D L L +
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPT--IEDSYRKQVVIDGETCLLDILDTAGQE 62
Query: 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDII--HVDDSVD 142
A + + G SF + + I V + + P ++ + D
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 143 PVRDLEVISAELRLKDIEFME 163
+ R I ++E
Sbjct: 123 RTVESRQAQDLARSYGIPYIE 143
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 29.4 bits (65), Expect = 0.44
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 27 IGIVGLPNVGKSTLFNTLTK 46
+VG + GK+TL
Sbjct: 4 WQVVGYKHSGKTTLMEKWVA 23
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 29.3 bits (64), Expect = 0.50
Identities = 14/151 (9%), Positives = 42/151 (27%), Gaps = 2/151 (1%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
+GI GL GK+TL N L++ +
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQW 84
Query: 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRD 146
H + ++ +H+ + + ++ + + +
Sbjct: 85 DVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKEWRPFF 144
Query: 147 --LEVISAELRLKDIEFMERRIEDVEKSMKR 175
+ + ++ ++ ++++K + R
Sbjct: 145 DFVVYLDCPREIRFARENDQVKQNIQKFINR 175
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 29.5 bits (66), Expect = 0.51
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 12 PAERPILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKLAIPAE 52
IL S + I G GKST+F+ L + P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTA 56
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 29.3 bits (64), Expect = 0.53
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 26 KIGIVGLPNVGKSTLFNTLTK 46
K+ +VG VGKS L +
Sbjct: 8 KLVVVGGGGVGKSALTIQFIQ 28
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.7 bits (63), Expect = 0.59
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 26 KIGIVGLPNVGKSTLFNTLTK 46
K+ ++G VGKS L
Sbjct: 5 KVVVLGSGGVGKSALTVQFVT 25
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 29.5 bits (65), Expect = 0.60
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK 46
+++GI G+P VGKST + L
Sbjct: 52 IRVGITGVPGVGKSTTIDALGS 73
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 29.1 bits (65), Expect = 0.63
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 13 AERPILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKL 47
AE LG S ++ + +VG GKSTL + +
Sbjct: 10 AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM 48
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 29.4 bits (65), Expect = 0.64
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKLAI-PAENFPFCTIEPNEARVNIPDERFEW 75
++ I+G+PNVGKSTL N L K I + P T +V E +
Sbjct: 112 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDT 164
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 29.2 bits (65), Expect = 0.64
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAE-----NFPFCTIEPNEARVNI 68
G++G GK+T ++ L P+ EP+E R I
Sbjct: 31 FGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 77
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 28.5 bits (62), Expect = 0.71
Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 9/146 (6%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
I +G P GKST A+N F I ++ R +I + K K +
Sbjct: 5 ILTIGCPGSGKSTWAREFI-----AKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGI 59
Query: 87 PAFLEIHDIAGLVRGAHEGQG----LGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVD 142
++ ++ G +G N A + + + V +
Sbjct: 60 VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTEL 119
Query: 143 PVRDLEVISAELRLKDIEFMERRIED 168
R+ + + + + + M + + +
Sbjct: 120 VKRNSKRGTKAVPIDVLRSMYKSMRE 145
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 28.5 bits (62), Expect = 0.86
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTK 46
KI +VG GK+ L + K
Sbjct: 3 CKIVVVGDSQCGKTALLHVFAK 24
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 28.4 bits (62), Expect = 0.88
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 20 RFSSHLKIGIVGLPNVGKSTLFNTLTK 46
R L++G++G GKS+L +
Sbjct: 1 RSIPELRLGVLGDARSGKSSLIHRFLT 27
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 28.5 bits (62), Expect = 0.94
Identities = 20/159 (12%), Positives = 43/159 (27%), Gaps = 4/159 (2%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSA 85
+ I+G + GKS L N L + N E + + P+ A
Sbjct: 9 TVAILGGESSGKSVLVNKLAAVF----NTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMA 64
Query: 86 VPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVR 145
+ I + + +G H + +
Sbjct: 65 LGHQRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNN 124
Query: 146 DLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIE 184
V L + ++ + ++K + + ++IE
Sbjct: 125 TEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIE 163
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 28.4 bits (62), Expect = 1.0
Identities = 23/180 (12%), Positives = 54/180 (30%), Gaps = 23/180 (12%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER-FEWLCQLFKPKS 84
I + G P VGK+TL L + + + D E+ C +
Sbjct: 6 NILLTGTPGVGKTTLGKELAS----KSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDR 61
Query: 85 AVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVL------RAFEDPDIIHVD 138
V G++ H + + + +VL R + + +
Sbjct: 62 VVDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNI 121
Query: 139 DSVDPVRDL-EVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIEHELCQRVKAWLQD 197
E ++ + + E++E ++ ++ + ++ W++D
Sbjct: 122 QCEIFQVLYEEATASYKEEIVHQLPSNKPEELENNVD-----------QILKWIEQWIKD 170
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 28.3 bits (63), Expect = 1.1
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 14 ERPILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKLAIP 50
++P+L R + ++ + G +GK+TL T++ P
Sbjct: 13 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP 53
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 28.1 bits (62), Expect = 1.2
Identities = 23/142 (16%), Positives = 42/142 (29%), Gaps = 13/142 (9%)
Query: 13 AERPILGRFSSHLKIGIVGLPNVGKSTLFNTLTKLA--IPAENFPFCTIEPNEARVNIPD 70
A P+L + +VGL GK+T T KLA + + + R +
Sbjct: 2 ARLPVLKDRNLWF---LVGLQGSGKTT---TAAKLALYYKGKGRRPLLVAADTQRPAARE 55
Query: 71 ERFEWLCQLFKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFE 130
+ ++ P V I V + + G +
Sbjct: 56 QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDL----ILVDTAGRLQIDEPLM 111
Query: 131 DPDIIHVDDSVDPVRDLEVISA 152
+ + + + P L V+ A
Sbjct: 112 GE-LARLKEVLGPDEVLLVLDA 132
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 28.4 bits (62), Expect = 1.3
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 27 IGIVGLPNVGKSTLFNTLTK 46
+ VG GK+TL +
Sbjct: 3 VVFVGTAGSGKTTLTGEFGR 22
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.4 bits (62), Expect = 1.5
Identities = 15/156 (9%), Positives = 39/156 (25%), Gaps = 9/156 (5%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEP-NEARVNIPDERFEWL------CQL 79
+ + G GKS L L + ++P + ++ L +
Sbjct: 53 LLVNGATGTGKSVLLRELAYTGL-LRGDRMVIVDPNGDMLSKFGRDKDIILNPYDQRTKG 111
Query: 80 FKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD 139
+ + + + A V + + L P + +
Sbjct: 112 WSFFNEIRNDYDWQRYALSVVPRGKTDEAEEWASYGRLLLRETAKKLALIGTPSMRELFH 171
Query: 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKR 175
+ + + L E + + K++
Sbjct: 172 WTT-IATFDDLRGFLEGTLAESLFAGSNEASKALTS 206
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 27.7 bits (60), Expect = 1.5
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 26 KIGIVGLPNVGKSTLFNTLTK 46
++ +VG VGKS L +
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQ 27
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Thermus thermophilus [TaxId:
274]}
Length = 204
Score = 28.0 bits (62), Expect = 1.5
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTK 46
H+ +G +G + GK+TL LT
Sbjct: 3 HVNVGTIGHVDHGKTTLTAALTY 25
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 28.0 bits (62), Expect = 1.6
Identities = 16/121 (13%), Positives = 35/121 (28%), Gaps = 2/121 (1%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
I+G GKSTL N +T E + + + + + P+
Sbjct: 33 TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK 92
Query: 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRD 146
+ + + G + + + + + E + H+ D +
Sbjct: 93 EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR--KAGE 150
Query: 147 L 147
L
Sbjct: 151 L 151
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 27.3 bits (59), Expect = 1.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 26 KIGIVGLPNVGKSTLFNTLTK 46
K+ +VG VGKS L +
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQ 26
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 27.3 bits (59), Expect = 1.9
Identities = 10/53 (18%), Positives = 15/53 (28%), Gaps = 1/53 (1%)
Query: 27 IGIVGLPNVGKSTLFNTLTK-LAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
I + G + GKS + L L P F ++ E
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDA 58
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 27.3 bits (59), Expect = 2.1
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 26 KIGIVGLPNVGKSTLFNTLTK 46
K+ ++G VGKS L +
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQ 25
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 27.3 bits (59), Expect = 2.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTK 46
+ IG+VG + GK+TL LT
Sbjct: 5 EVNIGMVGHVDHGKTTLTKALTG 27
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 27.6 bits (61), Expect = 2.2
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 12 PAERPILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKLAIP 50
P IL + +K IGIVG GKSTL + + IP
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 55
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage
lambda [TaxId: 10710]}
Length = 78
Score = 26.0 bits (57), Expect = 2.4
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 207 KAADIE--ILNTFQLLTAKPVVYLVNMNEKDYQRKKNKFLPKI 247
+A IE +LN +L + V +++ R K ++PK
Sbjct: 6 EALRIESALLNKIAMLGTEKTAEAVGVDKSQISRWKRDWIPKF 48
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 27.7 bits (61), Expect = 2.4
Identities = 11/49 (22%), Positives = 16/49 (32%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73
L+I + G +GK+T N EP N+ E
Sbjct: 6 LRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEPLSYWRNLAGEDA 54
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 27.5 bits (61), Expect = 2.4
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 12 PAERPILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKLAIPAEN 53
E P L + + + +VG GKST+ + +T+ E
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha,
N-terminal (G) domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 239
Score = 27.3 bits (60), Expect = 2.5
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 19 GRFSSHLKIGIVGLPNVGKSTL 40
G+ SH+ + ++G + GKST
Sbjct: 1 GKEKSHINVVVIGHVDSGKSTT 22
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 27.2 bits (60), Expect = 2.5
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 11/72 (15%)
Query: 19 GRFSSHLKIGIVGLPNVGKSTLFNTLTKL-------AIPAENFPFCTIEPNEARVNIPDE 71
+F I + G GK+ + + ENFPF + V +E
Sbjct: 99 KKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCV--DKMVIWWEE 156
Query: 72 --RFEWLCQLFK 81
+ + K
Sbjct: 157 GKMTAKVVESAK 168
>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 205
Score = 27.2 bits (59), Expect = 2.6
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 24 HLKIGIVGLPNVGKSTLFNTLTKL 47
+ IG+VG + GK+TL +T +
Sbjct: 8 EVNIGVVGHVDHGKTTLVQAITGI 31
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 27.0 bits (60), Expect = 2.7
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 11/61 (18%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
+ ++G GK+T + L EP E R+ D +L + S V
Sbjct: 35 LVLLGPSGCGKTTTLRMIAGL-----------EEPTEGRIYFGDRDVTYLPPKDRNISMV 83
Query: 87 P 87
Sbjct: 84 F 84
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 26.9 bits (58), Expect = 3.0
Identities = 18/164 (10%), Positives = 37/164 (22%), Gaps = 27/164 (16%)
Query: 27 IGIVGLPNVGKSTLFNTL--------TKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQ 78
+ + G P VGK+TL + + V L +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 79 L-------FKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGI--------- 122
+ + +++ L + + +D I
Sbjct: 64 VGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123
Query: 123 ---FHVLRAFEDPDIIHVDDSVDPVRDLEVISAELRLKDIEFME 163
II V + L ++ KD++
Sbjct: 124 FIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFN 167
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 26.6 bits (58), Expect = 3.6
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLA 48
I +VG+ GK+T + KLA
Sbjct: 14 IMVVGVNGTGKTT---SCGKLA 32
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 26.8 bits (58), Expect = 3.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 27 IGIVGLPNVGKSTLFNTLTKL 47
IG+ G GKS++ + +L
Sbjct: 5 IGVSGGTASGKSSVCAKIVQL 25
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 26.2 bits (57), Expect = 3.7
Identities = 6/15 (40%), Positives = 11/15 (73%)
Query: 24 HLKIGIVGLPNVGKS 38
H+ + I+G+ N+GK
Sbjct: 2 HMTVLIIGMGNIGKK 16
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 26.6 bits (58), Expect = 3.8
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLA 48
I +VG+ VGK+T T+ KLA
Sbjct: 12 ILMVGVNGVGKTT---TIGKLA 30
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 26.8 bits (59), Expect = 3.8
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIP 50
+ ++G GK+T + + L
Sbjct: 35 VTLIGANGAGKTTTLSAIAGLVRA 58
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 26.6 bits (57), Expect = 3.9
Identities = 8/49 (16%), Positives = 17/49 (34%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEW 75
+ + GL GK+T+ L + + + N + + F
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSP 70
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 26.7 bits (59), Expect = 4.2
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 12 PAERPILGRFSSHLK----IGIVGLPNVGKSTLFNTLTKLAIPAE 52
E PIL + ++ + VG+ GKSTL N + +
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 72
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 26.6 bits (58), Expect = 4.4
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLA 48
+ +VG+ VGK+T T+ KL
Sbjct: 9 VLVVGVNGVGKTT---TIAKLG 27
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 26.4 bits (58), Expect = 4.8
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDER 72
+ ++G GK+T + L E I + V P++
Sbjct: 32 MILLGPSGCGKTTTLRMIAGL----EEPSRGQIYIGDKLVADPEKG 73
>d2gyqa1 a.25.1.4 (A:1-160) Hypothetical ptotein RPA3308
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 160
Score = 25.9 bits (57), Expect = 4.9
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 156 LKDIEFMERRIEDVEKSM-KRSNDKQLK--IEHELCQ 189
L+DI + E++I M +++ ++ L + L +
Sbjct: 19 LRDIYYAEQQITKALPKMIEQATNRDLSQGLTSHLEE 55
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 26.1 bits (56), Expect = 5.4
Identities = 23/161 (14%), Positives = 47/161 (29%), Gaps = 10/161 (6%)
Query: 27 IGIVGLPNVGKSTLFNTLTK-------LAIPAENFPFCTIEPNEARVNIPDERFEWLCQL 79
I I G GKSTL L ++ + E N N E+ +
Sbjct: 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVS-VDEFKSMI 62
Query: 80 FKPKSAVPAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDD 139
+ A + V + G + + I ++A + + +
Sbjct: 63 KNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQG--VKSVKAIPELNARFLFI 120
Query: 140 SVDPVRDLEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQ 180
+ V DL+ + E + +R+ + + +
Sbjct: 121 APPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGA 161
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 26.4 bits (58), Expect = 5.5
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 26 KIGIVGLPNVGKSTLFNTLTKLAIP 50
+VG GKST+ L L P
Sbjct: 42 VTALVGPNGSGKSTVAALLQNLYQP 66
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 26.1 bits (56), Expect = 5.5
Identities = 29/179 (16%), Positives = 50/179 (27%), Gaps = 17/179 (9%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
I G VGKST L + + N V +E L +
Sbjct: 5 YIITGPAGVGKSTTCKRLAA-QLDNSAY-IEGDIINHMVVGGYRPPWESDELLALTWKNI 62
Query: 87 PAFLEIHDIAGLVRGAHEGQGLGNSFLSHIRAVDGIFHVLRAFEDPDIIHVDDSVDPVRD 146
+ +++ + + ++A D I +
Sbjct: 63 TDLTVNF--------LLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREE 114
Query: 147 LEVISAELRLKDIEFMERRIEDVEKSMKRSNDKQLKIE------HELCQRVKAWLQDGK 199
L A R KD + ER +E VE+ + D++ L VK + +
Sbjct: 115 LLRRDAL-RKKDEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLNDIVKNLKTNPR 172
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 25.9 bits (56), Expect = 6.3
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLA 48
I +VG+ GK+T T KLA
Sbjct: 15 IMLVGVQGTGKAT---TAGKLA 33
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 26.1 bits (57), Expect = 6.5
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLFKPKSAV 86
+ VG GKSTL + L E + E R+N + +F+ +
Sbjct: 29 VVFVGPSGCGKSTLLRMIAGL----ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALY 84
Query: 87 PAFLEIHDI 95
P ++
Sbjct: 85 PHLSVAENM 93
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 26.2 bits (57), Expect = 6.5
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIP 50
GI+G GK+T + L +P
Sbjct: 34 FGILGPSGAGKTTFMRIIAGLDVP 57
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 26.0 bits (57), Expect = 7.0
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAE 52
I I+G GKST + L P+E
Sbjct: 31 ISIIGSSGSGKSTFLRCINFLEKPSE 56
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 26.1 bits (57), Expect = 7.0
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIE 60
I + G G ST+ +T ++ E +IE
Sbjct: 7 ISVTGSSGAGTSTVKHTFDQI-FRREGVKAVSIE 39
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 25.8 bits (56), Expect = 7.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 27 IGIVGLPNVGKSTLFNTL 44
+ IVGL GKS L N L
Sbjct: 35 VAIVGLYRTGKSYLMNKL 52
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 25.8 bits (56), Expect = 8.1
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIP 50
I+G GK+ + +P
Sbjct: 29 FVILGPTGAGKTLFLELIAGFHVP 52
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 25.7 bits (56), Expect = 9.1
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERF 73
++I + G+ +GKST + A + EP + +
Sbjct: 7 VRIYLDGVYGIGKSTTGRVMAS-AASGGSPTLYFPEPMAYWRTLFETDV 54
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 25.2 bits (54), Expect = 9.4
Identities = 8/50 (16%), Positives = 13/50 (26%), Gaps = 4/50 (8%)
Query: 27 IGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWL 76
+ VG P GKST + + + + L
Sbjct: 17 VVAVGFPGAGKSTFIQEHLV----SAGYVHVNRDTLGSWQRCVSSCQAAL 62
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha,
N-terminal (G) domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 224
Score = 25.6 bits (55), Expect = 9.6
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 24 HLKIGIVGLPNVGKSTL 40
HL + ++G + GKSTL
Sbjct: 3 HLNLIVIGHVDHGKSTL 19
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 25.3 bits (54), Expect = 9.8
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 27 IGIVGLPNVGKSTLFNTLTK 46
+ + G+P VG +T
Sbjct: 4 VVVTGVPGVGSTTSSQLAMD 23
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312
{Thermotoga maritima [TaxId: 2336]}
Length = 181
Score = 25.3 bits (54), Expect = 9.8
Identities = 8/56 (14%), Positives = 17/56 (30%)
Query: 25 LKIGIVGLPNVGKSTLFNTLTKLAIPAENFPFCTIEPNEARVNIPDERFEWLCQLF 80
+++GIVG + L L+ E + + A + +
Sbjct: 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSY 59
>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
factor ERF2, G domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 245
Score = 25.6 bits (55), Expect = 9.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 24 HLKIGIVGLPNVGKSTL 40
H+ I +G + GKSTL
Sbjct: 24 HVNIVFIGHVDAGKSTL 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.418
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,366,373
Number of extensions: 65787
Number of successful extensions: 408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 160
Length of query: 350
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 264
Effective length of database: 1,226,816
Effective search space: 323879424
Effective search space used: 323879424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.8 bits)