BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 018810
         (350 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B6VQA5|SPT31_RAT Spermatogenesis-associated protein 31 OS=Rattus norvegicus
           GN=Spata31 PE=1 SV=1
          Length = 1048

 Score = 35.0 bits (79), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 12/87 (13%)

Query: 93  GFLFSKGTTRSIYFLDRQVNDSIQVDWGGASMIEAERILLRHALADPFNDRFVFLSDSFA 152
           G +  KG    +  L++ V     V   GA+++E ER L++H  +D  ND   ++ +   
Sbjct: 419 GPILGKGPKDPVKGLEKNV-----VKVQGANILEPERNLVKHFKSDSRNDSSNYIDEDLE 473

Query: 153 D-------TKEGRYNPKMAPVIPVHNW 172
           +       TK G+ N  + P+    +W
Sbjct: 474 NNWKANFGTKSGQINQGLTPLSMRQSW 500


>sp|Q7RUX3|SLT11_NEUCR Pre-mRNA-splicing factor slt-11 OS=Neurospora crassa (strain ATCC
           24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
           GN=slt-11 PE=3 SV=2
          Length = 385

 Score = 32.3 bits (72), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 212 WREHSFPADPSKEHNCIPDEHYVQTLLAQEGLEGELTRRSLTYSSWDLSSSKDHERR 268
           W    FP   S   NC+P+  YV+ L    G E +L  R  T  SW  ++ + H R+
Sbjct: 14  WEATDFP---SVCENCLPENPYVKMLKEDYGAECKLCTRPFTVFSW--AADRAHARK 65


>sp|Q4W9V0|SLT11_ASPFU Pre-mRNA-splicing factor slt11 OS=Neosartorya fumigata (strain ATCC
           MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=slt11
           PE=3 SV=1
          Length = 383

 Score = 31.6 bits (70), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 212 WREHSFPADPSKEHNCIPDEHYVQTLLAQEGLEGELTRRSLTYSSW 257
           W    FP   S   NC+PD  YVQ L    G E ++  R  T   W
Sbjct: 15  WESTDFP---SVCENCLPDNPYVQMLKEDYGAECKICTRPFTIFRW 57


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.136    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,604,788
Number of Sequences: 539616
Number of extensions: 5376123
Number of successful extensions: 12265
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12262
Number of HSP's gapped (non-prelim): 5
length of query: 350
length of database: 191,569,459
effective HSP length: 118
effective length of query: 232
effective length of database: 127,894,771
effective search space: 29671586872
effective search space used: 29671586872
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)