Query 018810
Match_columns 350
No_of_seqs 166 out of 468
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 04:13:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 1.6E-41 3.5E-46 340.4 21.6 213 52-324 75-353 (421)
2 PF02485 Branch: Core-2/I-Bran 100.0 1.9E-41 4.1E-46 315.5 5.7 200 57-289 1-244 (244)
3 KOG0799 Branching enzyme [Carb 99.8 5.3E-18 1.2E-22 172.3 13.4 194 56-280 104-350 (439)
4 TIGR03472 HpnI hopanoid biosyn 60.5 61 0.0013 32.2 9.5 70 20-93 9-79 (373)
5 PRK11204 N-glycosyltransferase 59.1 54 0.0012 32.7 8.9 44 51-94 50-94 (420)
6 cd06439 CESA_like_1 CESA_like_ 48.1 23 0.00049 32.1 3.8 46 50-95 24-72 (251)
7 PF13171 DUF4004: Protein of u 42.8 7.3 0.00016 36.3 -0.3 15 5-23 15-29 (199)
8 PRK14583 hmsR N-glycosyltransf 39.1 1.6E+02 0.0035 29.9 8.8 44 51-94 71-115 (444)
9 PRK14716 bacteriophage N4 adso 24.2 3.1E+02 0.0067 29.0 8.0 43 52-94 63-107 (504)
10 TIGR03469 HonB hopene-associat 23.8 4.5E+02 0.0097 26.2 8.8 95 52-150 37-143 (384)
11 COG1215 Glycosyltransferases, 21.4 5.1E+02 0.011 25.5 8.6 91 54-149 53-146 (439)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=340.38 Aligned_cols=213 Identities=22% Similarity=0.262 Sum_probs=164.3
Q ss_pred CCCCcEEEEEEeC-CC-CchHHHHHHHhccCCCceeEEEEeCCCCcccC-------------CCCCcceeeccccCCcee
Q 018810 52 VQKPKIAFLFIAR-NR-LPLEMVWDKFFKGEESRFSIYVHSRPGFLFSK-------------GTTRSIYFLDRQVNDSIQ 116 (350)
Q Consensus 52 ~~~~KiAfLiLAh-~~-~~l~~Lw~~ff~l~~~~~sIYIHvD~k~~~~~-------------~~~~s~vf~~r~i~~Rv~ 116 (350)
..+|||||||++| ++ .++++|+.+ ++++++.+|||+|++++..+ ....++|++ +.++..
T Consensus 75 ~~~~r~AYLI~~h~~d~~~l~RLL~a---LYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~v---l~k~~~ 148 (421)
T PLN03183 75 DKLPRFAYLVSGSKGDLEKLWRTLRA---LYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYM---ITKANL 148 (421)
T ss_pred CCCCeEEEEEEecCCcHHHHHHHHHH---hcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEE---Eeccee
Confidence 3489999999999 56 678999999 98999999999999975321 012345655 356788
Q ss_pred eecCcccHHHHHHHHHHHHhc-CCCCCEEEEeccc----------------------ccCCC-C------CCCCCC----
Q 018810 117 VDWGGASMIEAERILLRHALA-DPFNDRFVFLSDS----------------------FADTK-E------GRYNPK---- 162 (350)
Q Consensus 117 V~WGg~SlVeAel~LLr~AL~-d~~~~~fvLLSGs----------------------F~e~~-~------~RY~~~---- 162 (350)
|.|||+|||+||+.+++.+|+ ..+++|||+|||+ |++.. . .|+.+.
T Consensus 149 V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~p 228 (421)
T PLN03183 149 VTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDP 228 (421)
T ss_pred eccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecC
Confidence 999999999999999999997 6789999999993 22210 0 111110
Q ss_pred ---C-----------CCCCCc-cccccccceeeecHHHHHHhhcccccchH-HHHhhhccCCccccccCCCCCCCCCCCC
Q 018810 163 ---M-----------APVIPV-HNWRKGSQWAVLTRKHAEIVVNDTTVFPM-FQQHCKRKSLPEFWREHSFPADPSKEHN 226 (350)
Q Consensus 163 ---m-----------~p~i~~-~~~~kGSQW~sLtR~~Ae~Vv~d~~~~~~-F~~~c~~~~~~~~~~~~~~~~~~~~~~~ 226 (350)
+ .+.+|. .++++|||||+|||++|+||+...+..+. ...|++ .+
T Consensus 229 gl~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~--------------------~t 288 (421)
T PLN03183 229 GLYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYT--------------------NF 288 (421)
T ss_pred ceeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHh--------------------cC
Confidence 0 012232 47999999999999999999987655443 334444 47
Q ss_pred ccCchhHHHHHHhccC-CCCccccCceeEEeccCCCCCCCCCCCCCccccccCCCCHHHHHHHhhccccccccccccccc
Q 018810 227 CIPDEHYVQTLLAQEG-LEGELTRRSLTYSSWDLSSSKDHERRGWHPATYKYADATPLLIQSIKEIDNIYYETEHRREWC 305 (350)
Q Consensus 227 ~~pDE~ffqTLL~ns~-~~~~i~~~~LrYidW~~~~~~~~~~~g~hP~~~~~~D~t~~li~~i~~~d~~~~~~~~~~~~c 305 (350)
++|||+||||+|+|++ |.+.+.|++||||+|+. .+..||++|+.+|+ ++|.
T Consensus 289 ~~pdE~fFqTVl~NS~~f~~t~vn~nLRyI~W~~-------~~~~~P~~l~~~D~-----~~l~---------------- 340 (421)
T PLN03183 289 VSSPEGYFHTVICNVPEFAKTAVNHDLHYISWDN-------PPKQHPHTLSLNDT-----EKMI---------------- 340 (421)
T ss_pred CCCchHHHHHHHhhcccccccccCCceeEEecCC-------CCCCCCcccCHHHH-----HHHH----------------
Confidence 7999999999999997 99999999999999983 22349999999999 6666
Q ss_pred cCCCCCCCCceEEecCChh
Q 018810 306 SDKGKPSSCFLFARKFTRP 324 (350)
Q Consensus 306 ~~~g~~~s~~LFARKF~~~ 324 (350)
+|+.+|||||+.+
T Consensus 341 ------~S~~lFARKFd~d 353 (421)
T PLN03183 341 ------ASGAAFARKFRRD 353 (421)
T ss_pred ------hCCCccccCCCCC
Confidence 4888999999976
No 2
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=1.9e-41 Score=315.47 Aligned_cols=200 Identities=32% Similarity=0.482 Sum_probs=129.2
Q ss_pred EEEEEEeCC-CC-chHHHHHHHhccCCCceeEEEEeCCCCcc---c---C-CCCCcceeeccccCCceeeecCcccHHHH
Q 018810 57 IAFLFIARN-RL-PLEMVWDKFFKGEESRFSIYVHSRPGFLF---S---K-GTTRSIYFLDRQVNDSIQVDWGGASMIEA 127 (350)
Q Consensus 57 iAfLiLAh~-~~-~l~~Lw~~ff~l~~~~~sIYIHvD~k~~~---~---~-~~~~s~vf~~r~i~~Rv~V~WGg~SlVeA 127 (350)
||||||||+ +. ++++|++. ++++.+.+|||+|+++.. + . ......+++ +++|++|.|||+|||+|
T Consensus 1 iAylil~h~~~~~~~~~l~~~---l~~~~~~f~iHiD~k~~~~~~~~~~~~~~~~~nv~~---v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRL---LYHPDNDFYIHIDKKSPDYFYEEIKKLISCFPNVHF---VPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHH---H--TTSEEEEEE-TTS-HHHHHHHHHHHCT-TTEEE----SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHH---hcCCCCEEEEEEcCCCChHHHHHHHHhcccCCceee---cccccccccCCccHHHH
Confidence 799999988 64 45888887 677788899999999531 1 1 112234444 46799999999999999
Q ss_pred HHHHHHHHhc-CCCCCEEEEecccccC------------CCC-----------------CCCCCC----CCCCCCccccc
Q 018810 128 ERILLRHALA-DPFNDRFVFLSDSFAD------------TKE-----------------GRYNPK----MAPVIPVHNWR 173 (350)
Q Consensus 128 el~LLr~AL~-d~~~~~fvLLSGsF~e------------~~~-----------------~RY~~~----m~p~i~~~~~~ 173 (350)
|+.||++|++ ++.++|||||||+.+. ... +||++. +.+.++..+++
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 154 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLY 154 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--E
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccccccccccc
Confidence 9999999999 8899999999994321 110 122221 11223335789
Q ss_pred cccceeeecHHHHHHhhcccccchHHHHhhhccCCccccccCCCCCCCCCCCCccCchhHHHHHHhcc-CCCCccccCce
Q 018810 174 KGSQWAVLTRKHAEIVVNDTTVFPMFQQHCKRKSLPEFWREHSFPADPSKEHNCIPDEHYVQTLLAQE-GLEGELTRRSL 252 (350)
Q Consensus 174 kGSQW~sLtR~~Ae~Vv~d~~~~~~F~~~c~~~~~~~~~~~~~~~~~~~~~~~~~pDE~ffqTLL~ns-~~~~~i~~~~L 252 (350)
+|||||+|||++|++|+++....+.|.++|+ +++||||+||||||.|+ ++.+.+.++++
T Consensus 155 ~GSqW~~Ltr~~v~~il~~~~~~~~~~~~~~--------------------~~~~pDE~ffqTll~n~~~~~~~~~~~~~ 214 (244)
T PF02485_consen 155 KGSQWFSLTRDFVEYILDDPNYRPKLKKYFR--------------------FSLCPDESFFQTLLNNSGHFKDTIVNRNL 214 (244)
T ss_dssp EE-S--EEEHHHHHHHHH-HHHHHHHHHHT---------------------TSSSGGGTHHHHH--SSGGG-B-TTTSSS
T ss_pred ccceeeEeeHHHHHHhhhhHHHHHHHHHhhc--------------------CccCcchhhHHHhhcccchhcccccCCCE
Confidence 9999999999999999988888889988886 58899999999999999 67888999999
Q ss_pred eEEeccCCCCCCCCCCCCCccccccCCCCHHHHHHHh
Q 018810 253 TYSSWDLSSSKDHERRGWHPATYKYADATPLLIQSIK 289 (350)
Q Consensus 253 rYidW~~~~~~~~~~~g~hP~~~~~~D~t~~li~~i~ 289 (350)
|||+|+. ++++||++++..+++++.++.|+
T Consensus 215 r~i~W~~-------~~~~~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 215 RYIDWSR-------RGGCHPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp EEE-BTG-------T-SS---SSEEEE--GGGHHHH-
T ss_pred EEEECCC-------CCCCCCCeeeeeeeCHHHHHhhC
Confidence 9999982 56889999999999999888764
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.76 E-value=5.3e-18 Score=172.28 Aligned_cols=194 Identities=19% Similarity=0.214 Sum_probs=139.0
Q ss_pred cEEEEEEeCCC-CchHHHHHHHhccCCCceeEEEEeCCCCccc-------CCCCCcceeeccccCCceeeecCcccHHHH
Q 018810 56 KIAFLFIARNR-LPLEMVWDKFFKGEESRFSIYVHSRPGFLFS-------KGTTRSIYFLDRQVNDSIQVDWGGASMIEA 127 (350)
Q Consensus 56 KiAfLiLAh~~-~~l~~Lw~~ff~l~~~~~sIYIHvD~k~~~~-------~~~~~s~vf~~r~i~~Rv~V~WGg~SlVeA 127 (350)
=+||+.++|++ .++++++.+ .-++++.++||+|.++..+ .......|++ ++.+..|.|||.|++.|
T Consensus 104 ~~a~~~~v~kd~~~verll~a---iYhPqN~ycihvD~~s~~~fk~~~~~L~~cf~NV~v---~~k~~~v~~~G~s~l~a 177 (439)
T KOG0799|consen 104 PAAFLRVVYKDYEQVERLLQA---IYHPQNVYCIHVDAKSPPEFRVAMQQLASCFPNVIV---LPKRESVTYGGHSILAA 177 (439)
T ss_pred ceEEEEeecccHHHHHHHHHH---HhCCcCcceEEECCCCCHHHHHHHHHHHhcCCceEE---eccccceecCCchhhHH
Confidence 56788888888 677999999 6778899999999987532 1223345555 24688999999999999
Q ss_pred HHHHHHHHhc-CCCCCEEEEeccccc---------------------CC--CCC-CC------CC-----------CCCC
Q 018810 128 ERILLRHALA-DPFNDRFVFLSDSFA---------------------DT--KEG-RY------NP-----------KMAP 165 (350)
Q Consensus 128 el~LLr~AL~-d~~~~~fvLLSGsF~---------------------e~--~~~-RY------~~-----------~m~p 165 (350)
.+..|+..++ ..+++||++|||+.+ +. ..+ |+ .+ .+..
T Consensus 178 ~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~~~~~~~s~~~~~ 257 (439)
T KOG0799|consen 178 HLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDLKYFRNKSPLPWV 257 (439)
T ss_pred HHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCcccccchheecCCCccc
Confidence 9999999998 457999999999432 21 011 11 10 0111
Q ss_pred CCCc-cccccccceeeecHHHHHHhhcccccchHHHHhhhccCCccccccCCCCCCCCCCCCccCchhHHHHHHhccCCC
Q 018810 166 VIPV-HNWRKGSQWAVLTRKHAEIVVNDTTVFPMFQQHCKRKSLPEFWREHSFPADPSKEHNCIPDEHYVQTLLAQEGLE 244 (350)
Q Consensus 166 ~i~~-~~~~kGSQW~sLtR~~Ae~Vv~d~~~~~~F~~~c~~~~~~~~~~~~~~~~~~~~~~~~~pDE~ffqTLL~ns~~~ 244 (350)
.+|. ..+++||.|++|+|++|++++... ..+.+.++++ .++.|||+|++||+.|+ +.
T Consensus 258 ~lp~~~ki~~Gs~~~~LsR~fv~y~i~~~-~~~~ll~~~~--------------------~t~~~dE~f~~Tl~~n~-~~ 315 (439)
T KOG0799|consen 258 ILPTALKLFKGSAWVSLSRAFVEYLISGN-LPRTLLMYYN--------------------NTYSPDEGFFHTLQCNP-FG 315 (439)
T ss_pred cCCCceEEEecceeEEEeHHHHHHHhcCc-cHHHHHHHHh--------------------CccCcchhhhHhhhccc-cC
Confidence 1232 368999999999999999999993 3455555655 47899999999999999 55
Q ss_pred CccccCc--eeEEeccCCCCCCCCCCCCCccccccCCC
Q 018810 245 GELTRRS--LTYSSWDLSSSKDHERRGWHPATYKYADA 280 (350)
Q Consensus 245 ~~i~~~~--LrYidW~~~~~~~~~~~g~hP~~~~~~D~ 280 (350)
......+ +||+.|...- .+.-+.||..++..|.
T Consensus 316 ~~g~~~~~~lr~~~W~~~~---~~~~~~~c~~~~~~~~ 350 (439)
T KOG0799|consen 316 MPGVFNDECLRYTNWDRKD---VDPPKQHCHSLTVRDF 350 (439)
T ss_pred CCCcccchhhcceeccccc---ccccccCCcccccccc
Confidence 5445566 9999998311 0012346777777776
No 4
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=60.53 E-value=61 Score=32.19 Aligned_cols=70 Identities=13% Similarity=0.157 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCCcEEEEEEeCCC-CchHHHHHHHhccCCCceeEEEEeCCC
Q 018810 20 KVFAAILLGFCFGSLVLMQCQYTRIMSLRPRFVQKPKIAFLFIARNR-LPLEMVWDKFFKGEESRFSIYVHSRPG 93 (350)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KiAfLiLAh~~-~~l~~Lw~~ff~l~~~~~sIYIHvD~k 93 (350)
-+.+++++++.+++++.....+++.. ..+ ...|++..+|-+||. ..++..++.+.+.+.+.+.|.| +|-+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIiv-vdd~ 79 (373)
T TIGR03472 9 ALLSLAGCGYTLLAAALVRRFFRRAA-RAP--RAWPPVSVLKPLHGDEPELYENLASFCRQDYPGFQMLF-GVQD 79 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCC-CCC--CCCCCeEEEEECCCCChhHHHHHHHHHhcCCCCeEEEE-EeCC
Confidence 34445556666666666655444421 122 336889999999998 5578889998887767788877 4443
No 5
>PRK11204 N-glycosyltransferase; Provisional
Probab=59.08 E-value=54 Score=32.70 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=33.5
Q ss_pred CCCCCcEEEEEEeCCC-CchHHHHHHHhccCCCceeEEEEeCCCC
Q 018810 51 FVQKPKIAFLFIARNR-LPLEMVWDKFFKGEESRFSIYVHSRPGF 94 (350)
Q Consensus 51 ~~~~~KiAfLiLAh~~-~~l~~Lw~~ff~l~~~~~sIYIHvD~k~ 94 (350)
....|+++.+|-+|++ ..+.+.++...+.+.+.+.|+|=-|...
T Consensus 50 ~~~~p~vsViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~ 94 (420)
T PRK11204 50 LKEYPGVSILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSS 94 (420)
T ss_pred cCCCCCEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCC
Confidence 3556899999999998 4578888887776667788888655543
No 6
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=48.11 E-value=23 Score=32.14 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=34.1
Q ss_pred CCCCCCcEEEEEEeCCC-CchHHHHHHHhccCCC--ceeEEEEeCCCCc
Q 018810 50 RFVQKPKIAFLFIARNR-LPLEMVWDKFFKGEES--RFSIYVHSRPGFL 95 (350)
Q Consensus 50 ~~~~~~KiAfLiLAh~~-~~l~~Lw~~ff~l~~~--~~sIYIHvD~k~~ 95 (350)
.-...|+++.+|.+|++ ..+++.++.+++.... .+.|+|..|...+
T Consensus 24 ~~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d 72 (251)
T cd06439 24 DPAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTD 72 (251)
T ss_pred CCCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCc
Confidence 34677899999999998 4568888887664322 3788888887653
No 7
>PF13171 DUF4004: Protein of unknown function (DUF4004)
Probab=42.78 E-value=7.3 Score=36.27 Aligned_cols=15 Identities=47% Similarity=0.964 Sum_probs=11.4
Q ss_pred hhHHHhhhHhHHHHHHHHH
Q 018810 5 VVYQQQQKFNYKWKRKVFA 23 (350)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~ 23 (350)
+||-| |||||||=+|
T Consensus 15 ISYGQ----LYRWKRKnLI 29 (199)
T PF13171_consen 15 ISYGQ----LYRWKRKNLI 29 (199)
T ss_pred CcHHH----HHHHHHcCCC
Confidence 56665 8999999654
No 8
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=39.06 E-value=1.6e+02 Score=29.92 Aligned_cols=44 Identities=9% Similarity=0.059 Sum_probs=34.0
Q ss_pred CCCCCcEEEEEEeCCC-CchHHHHHHHhccCCCceeEEEEeCCCC
Q 018810 51 FVQKPKIAFLFIARNR-LPLEMVWDKFFKGEESRFSIYVHSRPGF 94 (350)
Q Consensus 51 ~~~~~KiAfLiLAh~~-~~l~~Lw~~ff~l~~~~~sIYIHvD~k~ 94 (350)
....|+++.+|-+||+ ..+...++...+.+.+.++|+|--|...
T Consensus 71 ~~~~p~vsViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~ 115 (444)
T PRK14583 71 LKGHPLVSILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSS 115 (444)
T ss_pred cCCCCcEEEEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCC
Confidence 4556899999999998 4568888887776667788888666543
No 9
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=24.20 E-value=3.1e+02 Score=29.03 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=32.9
Q ss_pred CCCCcEEEEEEeCCCC-chHHHHHHHh-ccCCCceeEEEEeCCCC
Q 018810 52 VQKPKIAFLFIARNRL-PLEMVWDKFF-KGEESRFSIYVHSRPGF 94 (350)
Q Consensus 52 ~~~~KiAfLiLAh~~~-~l~~Lw~~ff-~l~~~~~sIYIHvD~k~ 94 (350)
...|+++.||-||++. -+.++++... +++.+++.|+|=.|.+.
T Consensus 63 ~~~p~vaIlIPA~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~nd 107 (504)
T PRK14716 63 VPEKRIAIFVPAWREADVIGRMLEHNLATLDYENYRIFVGTYPND 107 (504)
T ss_pred CCCCceEEEEeccCchhHHHHHHHHHHHcCCCCCeEEEEEECCCC
Confidence 4478999999999984 4688887643 46668899999887653
No 10
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=23.78 E-value=4.5e+02 Score=26.16 Aligned_cols=95 Identities=11% Similarity=0.089 Sum_probs=52.4
Q ss_pred CCCCcEEEEEEeCCC-CchHHHHHHHhccCCC-ceeEEEEeCCCCccc-----C---CCC-CcceeeccccCCceeeecC
Q 018810 52 VQKPKIAFLFIARNR-LPLEMVWDKFFKGEES-RFSIYVHSRPGFLFS-----K---GTT-RSIYFLDRQVNDSIQVDWG 120 (350)
Q Consensus 52 ~~~~KiAfLiLAh~~-~~l~~Lw~~ff~l~~~-~~sIYIHvD~k~~~~-----~---~~~-~s~vf~~r~i~~Rv~V~WG 120 (350)
...|++..+|-++++ ..+.++++.+.+.+.+ .+.|.|=-|...+-. . ..+ ...+-+.+ .+..+..|+
T Consensus 37 ~~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~--~~~~~~g~~ 114 (384)
T TIGR03469 37 EAWPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVS--GQPLPPGWS 114 (384)
T ss_pred CCCCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEec--CCCCCCCCc
Confidence 456899999999998 5579999997764433 466666555433210 0 000 01121100 012233455
Q ss_pred cccHHHHHHHHHHHHhc-CCCCCEEEEeccc
Q 018810 121 GASMIEAERILLRHALA-DPFNDRFVFLSDS 150 (350)
Q Consensus 121 g~SlVeAel~LLr~AL~-d~~~~~fvLLSGs 150 (350)
| -..|.-..+++|-+ ++..++++++-.+
T Consensus 115 G--k~~A~n~g~~~A~~~~~~gd~llflDaD 143 (384)
T TIGR03469 115 G--KLWAVSQGIAAARTLAPPADYLLLTDAD 143 (384)
T ss_pred c--hHHHHHHHHHHHhccCCCCCEEEEECCC
Confidence 4 34566667777764 3345777776663
No 11
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=21.40 E-value=5.1e+02 Score=25.51 Aligned_cols=91 Identities=18% Similarity=0.195 Sum_probs=52.9
Q ss_pred CCcEEEEEEeCCCCc--hHHHHHHHhccCCCceeEEEEeCCCCccc-CCCCCcceeeccccCCceeeecCcccHHHHHHH
Q 018810 54 KPKIAFLFIARNRLP--LEMVWDKFFKGEESRFSIYVHSRPGFLFS-KGTTRSIYFLDRQVNDSIQVDWGGASMIEAERI 130 (350)
Q Consensus 54 ~~KiAfLiLAh~~~~--l~~Lw~~ff~l~~~~~sIYIHvD~k~~~~-~~~~~s~vf~~r~i~~Rv~V~WGg~SlVeAel~ 130 (350)
.|++..+|=+||+.+ ++..++...+.+.+.++|+|=.|-+.+-. +.... .+.+..+++.+... -.-...-..
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~----~~~~~~~~~~~~~~-~~~~~gK~~ 127 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEE----LGAEYGPNFRVIYP-EKKNGGKAG 127 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHH----HHhhcCcceEEEec-cccCccchH
Confidence 499999999999855 58989987887878899999888544210 00000 00000012333311 122334455
Q ss_pred HHHHHhcCCCCCEEEEecc
Q 018810 131 LLRHALADPFNDRFVFLSD 149 (350)
Q Consensus 131 LLr~AL~d~~~~~fvLLSG 149 (350)
.+..|+.....+.++++-.
T Consensus 128 al~~~l~~~~~d~V~~~Da 146 (439)
T COG1215 128 ALNNGLKRAKGDVVVILDA 146 (439)
T ss_pred HHHHHHhhcCCCEEEEEcC
Confidence 6666776555666766655
Done!