Query 018810
Match_columns 350
No_of_seqs 166 out of 468
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 06:24:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018810.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018810hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 26.7 55 0.004 26.1 6.2 40 55-94 1-41 (255)
2 d1r5la1 a.5.3.1 (A:25-90) Alph 14.9 15 0.0011 25.1 -0.2 20 314-333 30-49 (66)
3 d1olma1 a.5.3.1 (A:1-75) Super 12.1 20 0.0015 24.6 -0.2 19 314-332 40-58 (75)
4 d1auaa1 a.5.3.1 (A:4-96) N-ter 9.0 30 0.0022 25.0 -0.2 20 314-333 57-76 (93)
5 d2qalc1 d.52.3.1 (C:1-105) Rib 8.0 53 0.0039 24.3 0.8 30 175-204 18-47 (105)
6 d2uubc1 d.52.3.1 (C:2-106) Rib 7.6 38 0.0027 25.1 -0.2 30 175-204 18-47 (105)
7 d1omza_ c.68.1.15 (A:) Alpha-1 7.5 2.8E+02 0.02 20.2 5.2 40 55-95 3-43 (265)
8 d1vkfa_ c.1.29.1 (A:) Glycerol 7.0 79 0.0058 25.5 1.5 31 59-92 22-53 (172)
9 d1fo8a_ c.68.1.10 (A:) N-acety 6.4 1.9E+02 0.014 25.4 4.0 95 55-149 2-108 (343)
10 d2noca1 d.230.6.1 (A:1-91) Put 5.1 3.1E+02 0.022 19.4 3.8 35 114-150 42-76 (91)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=26.66 E-value=55 Score=26.06 Aligned_cols=40 Identities=13% Similarity=0.246 Sum_probs=32.7
Q ss_pred CcEEEEEEeCCC-CchHHHHHHHhccCCCceeEEEEeCCCC
Q 018810 55 PKIAFLFIARNR-LPLEMVWDKFFKGEESRFSIYVHSRPGF 94 (350)
Q Consensus 55 ~KiAfLiLAh~~-~~l~~Lw~~ff~l~~~~~sIYIHvD~k~ 94 (350)
|||..+|-+++. ..+++.++..+....+.+.|+|+-|...
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~ 41 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSN 41 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCC
T ss_pred CEEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCC
Confidence 799999999987 4578888887775667799999988654
No 2
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.94 E-value=15 Score=25.13 Aligned_cols=20 Identities=45% Similarity=0.443 Sum_probs=16.7
Q ss_pred CceEEecCChhhHHHHHhhh
Q 018810 314 CFLFARKFTRPAALRLLTMS 333 (350)
Q Consensus 314 ~~LFARKF~~~~~~~Ll~~~ 333 (350)
-||-||||+.+.+..+++.-
T Consensus 30 rFLRarkf~~~ka~~~l~~y 49 (66)
T d1r5la1 30 RFLRARDFDLDLAWRLLKNY 49 (66)
T ss_dssp HHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHH
Confidence 37889999999998888754
No 3
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.08 E-value=20 Score=24.64 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=15.9
Q ss_pred CceEEecCChhhHHHHHhh
Q 018810 314 CFLFARKFTRPAALRLLTM 332 (350)
Q Consensus 314 ~~LFARKF~~~~~~~Ll~~ 332 (350)
-||-||||+.+.+...+..
T Consensus 40 RFLrAr~fdv~kA~~ml~~ 58 (75)
T d1olma1 40 RWLRARSFDLQKSEAMLRK 58 (75)
T ss_dssp HHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHH
Confidence 4788999999988887765
No 4
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.01 E-value=30 Score=25.02 Aligned_cols=20 Identities=35% Similarity=0.381 Sum_probs=16.7
Q ss_pred CceEEecCChhhHHHHHhhh
Q 018810 314 CFLFARKFTRPAALRLLTMS 333 (350)
Q Consensus 314 ~~LFARKF~~~~~~~Ll~~~ 333 (350)
.||-||||+.+.+..+|...
T Consensus 57 RfLrAr~fd~~~a~~ml~~~ 76 (93)
T d1auaa1 57 RFLRARKFDVQLAKEMFENC 76 (93)
T ss_dssp HHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHH
Confidence 57889999999988888653
No 5
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.00 E-value=53 Score=24.28 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=24.7
Q ss_pred ccceeeecHHHHHHhhcccccchHHHHhhh
Q 018810 175 GSQWAVLTRKHAEIVVNDTTVFPMFQQHCK 204 (350)
Q Consensus 175 GSQW~sLtR~~Ae~Vv~d~~~~~~F~~~c~ 204 (350)
.|.||+=.++.+++|.+|........++++
T Consensus 18 ~S~Wfa~~~~Y~~~l~eD~~IR~~i~k~~~ 47 (105)
T d2qalc1 18 NSTWFANTKEFADNLDSDFKVRQYLTKELA 47 (105)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCEEcCCccchHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999887666665554
No 6
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=7.62 E-value=38 Score=25.09 Aligned_cols=30 Identities=10% Similarity=0.306 Sum_probs=24.7
Q ss_pred ccceeeecHHHHHHhhcccccchHHHHhhh
Q 018810 175 GSQWAVLTRKHAEIVVNDTTVFPMFQQHCK 204 (350)
Q Consensus 175 GSQW~sLtR~~Ae~Vv~d~~~~~~F~~~c~ 204 (350)
.|.||+=.++.+++|.+|......+.++++
T Consensus 18 ~S~W~a~~~~y~~~l~eD~~IR~~i~k~~~ 47 (105)
T d2uubc1 18 ESRWYAGKKQYRHLLLEDQRIRGLLEKELY 47 (105)
T ss_dssp SCBCCCCTTTTTHHHHHHHHHHHHHHHSTT
T ss_pred CceEcCChhhhHHHHHHHHHHHHHHHhhcc
Confidence 499999999999999999887666665554
No 7
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.46 E-value=2.8e+02 Score=20.20 Aligned_cols=40 Identities=13% Similarity=-0.024 Sum_probs=29.7
Q ss_pred CcEEEEEEeCCC-CchHHHHHHHhccCCCceeEEEEeCCCCc
Q 018810 55 PKIAFLFIARNR-LPLEMVWDKFFKGEESRFSIYVHSRPGFL 95 (350)
Q Consensus 55 ~KiAfLiLAh~~-~~l~~Lw~~ff~l~~~~~sIYIHvD~k~~ 95 (350)
-|+..+|.+|+. ..+++.++...+.. ....+.|..|..++
T Consensus 3 ~~~tvii~tyn~~~~l~~~l~sl~~q~-~~~~~iiV~d~~sd 43 (265)
T d1omza_ 3 DSFTLIMQTYNRTDLLLRLLNHYQAVP-SLHKVIVVWNNVGE 43 (265)
T ss_dssp TCEEEEEEESSCHHHHHHHHHHHTTST-TEEEEEEEECCTTC
T ss_pred CcEEEEEEcCCCHHHHHHHHHHHHcCC-CcCeEEEEECCCCC
Confidence 478899999988 45799999966543 34567888887653
No 8
>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]}
Probab=7.04 E-value=79 Score=25.48 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=21.5
Q ss_pred EEEEeCCC-CchHHHHHHHhccCCCceeEEEEeCC
Q 018810 59 FLFIARNR-LPLEMVWDKFFKGEESRFSIYVHSRP 92 (350)
Q Consensus 59 fLiLAh~~-~~l~~Lw~~ff~l~~~~~sIYIHvD~ 92 (350)
+.|+..++ ..+..+++.+-+ ..=-+|||+|-
T Consensus 22 ~iflL~g~I~~l~~~v~~~k~---~gK~v~VHiDL 53 (172)
T d1vkfa_ 22 VVFLLKSDILNLKFHLKILKD---RGKTVFVDMDF 53 (172)
T ss_dssp EEEECCEETTTHHHHHHHHHH---TTCEEEEEGGG
T ss_pred EEEEecCcHHHHHHHHHHHHH---cCCEEEEEeee
Confidence 44666766 677888888333 33358999998
No 9
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=6.43 E-value=1.9e+02 Score=25.43 Aligned_cols=95 Identities=18% Similarity=0.115 Sum_probs=52.5
Q ss_pred CcEEEEEEeCCCCchHHHHHHHhccC--CCceeEEEEeCCCCcc--cC--CCCCcceeec------cccCCceeeecCcc
Q 018810 55 PKIAFLFIARNRLPLEMVWDKFFKGE--ESRFSIYVHSRPGFLF--SK--GTTRSIYFLD------RQVNDSIQVDWGGA 122 (350)
Q Consensus 55 ~KiAfLiLAh~~~~l~~Lw~~ff~l~--~~~~sIYIHvD~k~~~--~~--~~~~s~vf~~------r~i~~Rv~V~WGg~ 122 (350)
+=|+.||+|++...+.+.+++.++.. .+.+.|||-.|-...- +. ........+. ..+.......=|.+
T Consensus 2 ~viPVlv~a~NRP~l~r~LesLlk~~p~~~~~~I~Vs~DG~~~~~~~~v~~~~~~v~~I~~~~~~~~~~~~~~~k~~~n~ 81 (343)
T d1fo8a_ 2 AVIPILVIACDRSTVRRCLDKLLHYRPSAELFPIIVSQDCGHEETAQVIASYGSAVTHIRQPDLSNIAVQPDHRKFQGYY 81 (343)
T ss_dssp CCCCEEEEESSCTTHHHHHHHHHHHCSCTTTSCEEEEECTTCHHHHHHHHTTGGGSEEEECSCCCCCCCCTTCGGGHHHH
T ss_pred CcccEEEEEcCHHHHHHHHHHHHhcCccccCccEEEEecCCchhHHHHHHHHHHHHHHhcCCccccceecchhhcccchh
Confidence 34678999998766888888877632 3567799999974321 00 0000011110 00000001111344
Q ss_pred cHHHHHHHHHHHHhcCCCCCEEEEecc
Q 018810 123 SMIEAERILLRHALADPFNDRFVFLSD 149 (350)
Q Consensus 123 SlVeAel~LLr~AL~d~~~~~fvLLSG 149 (350)
.+.+.-...|....+...+++.+.|=+
T Consensus 82 giarhy~~AL~~~F~~~~~~~~IiLED 108 (343)
T d1fo8a_ 82 KIARHYRWALGQIFHNFNYPAAVVVED 108 (343)
T ss_dssp HHHHHHHHHHHHHHTTSCCSEEEEEET
T ss_pred HHHHHHHHHHHHHhcccCCceEEEEec
Confidence 555666666777776556788888877
No 10
>d2noca1 d.230.6.1 (A:1-91) Putative periplasmic protein YahO {Salmonella choleraesuis [TaxId: 28901]}
Probab=5.12 E-value=3.1e+02 Score=19.40 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=28.4
Q ss_pred ceeeecCcccHHHHHHHHHHHHhcCCCCCEEEEeccc
Q 018810 114 SIQVDWGGASMIEAERILLRHALADPFNDRFVFLSDS 150 (350)
Q Consensus 114 Rv~V~WGg~SlVeAel~LLr~AL~d~~~~~fvLLSGs 150 (350)
.|.|. |.-|.-+++..|-+.|=+.+ .+||+.+|.+
T Consensus 42 ~Isv~-~~~sp~d~~~~Ls~KAd~~G-A~~y~Iis~~ 76 (91)
T d2noca1 42 TISTT-GEMSPLDAREDLIKKADEKG-ADVVVLTSGQ 76 (91)
T ss_dssp EEECC-SCCCHHHHHHHHHHHHHHTC-CSEEECCSCC
T ss_pred EEEEC-CCCCHHHHHHHHHHHHHHcC-CCEEEEEEec
Confidence 56777 77799999999999997754 5789999874
Done!