Query 018812
Match_columns 350
No_of_seqs 240 out of 1544
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 04:14:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/018812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.3 4.5E-13 9.8E-18 94.2 2.7 44 33-76 1-44 (44)
2 KOG4628 Predicted E3 ubiquitin 99.1 3.2E-11 6.9E-16 118.9 3.6 49 33-81 230-279 (348)
3 PF12678 zf-rbx1: RING-H2 zinc 99.1 8.7E-11 1.9E-15 91.8 4.2 46 31-76 18-73 (73)
4 KOG0823 Predicted E3 ubiquitin 99.0 1.1E-10 2.3E-15 108.9 3.5 54 29-85 44-100 (230)
5 PHA02929 N1R/p28-like protein; 99.0 1.7E-10 3.7E-15 109.0 4.9 54 28-81 170-228 (238)
6 PLN03208 E3 ubiquitin-protein 99.0 2E-10 4.3E-15 105.0 4.2 54 29-85 15-84 (193)
7 KOG0317 Predicted E3 ubiquitin 99.0 2.7E-10 5.8E-15 109.1 3.7 54 27-83 234-287 (293)
8 smart00504 Ubox Modified RING 99.0 7.7E-10 1.7E-14 82.5 5.3 58 32-92 1-58 (63)
9 PF13920 zf-C3HC4_3: Zinc fing 98.9 8.2E-10 1.8E-14 79.7 3.7 47 31-80 1-48 (50)
10 PF13923 zf-C3HC4_2: Zinc fing 98.9 6.1E-10 1.3E-14 76.5 2.8 39 35-75 1-39 (39)
11 PF12861 zf-Apc11: Anaphase-pr 98.9 1.3E-09 2.7E-14 87.6 3.8 52 31-82 20-84 (85)
12 PF15227 zf-C3HC4_4: zinc fing 98.9 1.5E-09 3.2E-14 76.3 3.1 38 35-75 1-42 (42)
13 KOG0320 Predicted E3 ubiquitin 98.9 9.5E-10 2.1E-14 99.0 2.4 53 32-85 131-183 (187)
14 TIGR00599 rad18 DNA repair pro 98.8 2.7E-09 5.9E-14 107.4 5.1 60 31-93 25-84 (397)
15 cd00162 RING RING-finger (Real 98.8 3.8E-09 8.3E-14 72.1 3.7 44 34-79 1-45 (45)
16 COG5540 RING-finger-containing 98.8 2.5E-09 5.3E-14 103.2 3.4 49 33-81 324-373 (374)
17 COG5243 HRD1 HRD ubiquitin lig 98.8 3.3E-09 7E-14 104.7 3.5 52 29-80 284-345 (491)
18 KOG0287 Postreplication repair 98.8 3.5E-09 7.7E-14 103.4 3.1 61 32-95 23-83 (442)
19 PHA02926 zinc finger-like prot 98.8 4.3E-09 9.3E-14 97.9 3.0 58 24-81 162-231 (242)
20 PF00097 zf-C3HC4: Zinc finger 98.7 1E-08 2.2E-13 70.7 2.9 39 35-75 1-41 (41)
21 KOG0311 Predicted E3 ubiquitin 98.7 1.5E-09 3.3E-14 106.4 -1.8 88 32-135 43-132 (381)
22 PF14634 zf-RING_5: zinc-RING 98.7 1.6E-08 3.6E-13 71.3 3.3 44 34-77 1-44 (44)
23 KOG2164 Predicted E3 ubiquitin 98.7 9.7E-09 2.1E-13 104.9 2.6 54 32-88 186-244 (513)
24 PF04564 U-box: U-box domain; 98.6 7.3E-08 1.6E-12 75.1 4.9 60 31-93 3-63 (73)
25 smart00184 RING Ring finger. E 98.5 7.6E-08 1.6E-12 63.3 3.4 38 35-75 1-39 (39)
26 KOG0802 E3 ubiquitin ligase [P 98.5 3.7E-08 8.1E-13 103.0 2.6 52 30-81 289-342 (543)
27 COG5574 PEX10 RING-finger-cont 98.5 4.9E-08 1.1E-12 92.7 2.4 50 32-84 215-266 (271)
28 COG5194 APC11 Component of SCF 98.4 1.5E-07 3.3E-12 74.6 2.7 36 48-83 49-84 (88)
29 PF13445 zf-RING_UBOX: RING-ty 98.4 2.8E-07 6.1E-12 65.2 2.9 38 35-73 1-43 (43)
30 PF14835 zf-RING_6: zf-RING of 98.3 1.5E-07 3.3E-12 71.8 1.1 58 32-93 7-64 (65)
31 COG5432 RAD18 RING-finger-cont 98.3 3.1E-07 6.7E-12 88.4 2.5 50 29-81 22-71 (391)
32 KOG2177 Predicted E3 ubiquitin 98.3 3.2E-07 7E-12 83.9 1.9 59 30-93 11-69 (386)
33 KOG1493 Anaphase-promoting com 98.3 2E-07 4.3E-12 73.3 0.4 52 31-82 19-83 (84)
34 TIGR00570 cdk7 CDK-activating 98.3 6.5E-07 1.4E-11 87.5 3.8 56 32-87 3-61 (309)
35 KOG1734 Predicted RING-contain 97.9 2E-06 4.3E-11 82.2 0.2 55 28-82 220-283 (328)
36 KOG2930 SCF ubiquitin ligase, 97.9 6E-06 1.3E-10 68.5 1.8 51 31-81 45-109 (114)
37 PF11793 FANCL_C: FANCL C-term 97.8 2.8E-06 6.1E-11 66.0 -0.8 50 32-81 2-67 (70)
38 KOG0978 E3 ubiquitin ligase in 97.8 6.8E-06 1.5E-10 87.7 1.7 51 32-85 643-694 (698)
39 KOG0828 Predicted E3 ubiquitin 97.8 9.9E-06 2.2E-10 82.8 2.3 50 32-81 571-635 (636)
40 KOG1039 Predicted E3 ubiquitin 97.8 1.6E-05 3.5E-10 79.1 3.1 59 24-82 153-223 (344)
41 KOG4172 Predicted E3 ubiquitin 97.7 9.2E-06 2E-10 60.3 0.5 47 31-80 6-54 (62)
42 smart00744 RINGv The RING-vari 97.7 3.4E-05 7.4E-10 56.0 3.4 42 34-76 1-49 (49)
43 COG5219 Uncharacterized conser 97.7 1.5E-05 3.3E-10 86.4 1.5 49 32-80 1469-1523(1525)
44 KOG0824 Predicted E3 ubiquitin 97.6 3.6E-05 7.7E-10 74.7 2.6 48 32-82 7-55 (324)
45 KOG0827 Predicted E3 ubiquitin 97.6 4.2E-05 9.2E-10 76.4 2.7 49 33-81 5-57 (465)
46 KOG2660 Locus-specific chromos 97.5 2.6E-05 5.7E-10 76.4 0.6 48 32-81 15-62 (331)
47 KOG0825 PHD Zn-finger protein 97.5 2.1E-05 4.6E-10 84.0 -0.1 52 30-81 121-172 (1134)
48 KOG4159 Predicted E3 ubiquitin 97.5 6.8E-05 1.5E-09 76.0 3.0 58 21-81 73-130 (398)
49 KOG0804 Cytoplasmic Zn-finger 97.4 5.8E-05 1.3E-09 76.6 1.2 47 32-80 175-222 (493)
50 KOG4265 Predicted E3 ubiquitin 97.4 0.00012 2.7E-09 72.5 3.3 46 32-80 290-336 (349)
51 KOG1785 Tyrosine kinase negati 97.3 0.00031 6.7E-09 70.6 4.9 49 34-85 371-421 (563)
52 KOG1428 Inhibitor of type V ad 97.3 0.00016 3.5E-09 81.3 3.1 72 28-100 3483-3569(3738)
53 KOG4445 Uncharacterized conser 97.2 0.00028 6E-09 68.7 4.0 51 32-82 115-188 (368)
54 KOG1813 Predicted E3 ubiquitin 97.2 0.00018 3.8E-09 69.8 2.4 59 33-94 242-300 (313)
55 KOG1645 RING-finger-containing 97.2 0.00029 6.3E-09 71.0 3.5 55 31-85 3-61 (463)
56 KOG0297 TNF receptor-associate 97.1 0.00019 4.1E-09 72.7 1.8 54 30-85 19-72 (391)
57 PF11789 zf-Nse: Zinc-finger o 97.1 0.00022 4.7E-09 53.4 1.5 41 32-74 11-53 (57)
58 KOG3970 Predicted E3 ubiquitin 97.1 0.00077 1.7E-08 63.4 5.0 56 30-86 48-111 (299)
59 COG5152 Uncharacterized conser 96.9 0.00035 7.6E-09 64.5 1.5 46 32-80 196-241 (259)
60 KOG2879 Predicted E3 ubiquitin 96.8 0.00086 1.9E-08 64.6 3.4 50 29-80 236-287 (298)
61 KOG4692 Predicted E3 ubiquitin 96.6 0.00099 2.1E-08 66.2 2.2 53 26-81 416-468 (489)
62 KOG1002 Nucleotide excision re 96.5 0.001 2.2E-08 69.1 1.2 52 28-82 532-588 (791)
63 KOG3039 Uncharacterized conser 96.3 0.0038 8.2E-08 59.5 3.6 54 32-85 221-275 (303)
64 KOG3268 Predicted E3 ubiquitin 96.1 0.0049 1.1E-07 56.2 3.2 62 18-82 154-230 (234)
65 KOG1814 Predicted E3 ubiquitin 96.0 0.0084 1.8E-07 60.7 4.6 47 33-79 185-239 (445)
66 KOG1941 Acetylcholine receptor 96.0 0.0023 5.1E-08 64.3 0.7 48 31-78 364-414 (518)
67 KOG4275 Predicted E3 ubiquitin 95.8 0.002 4.4E-08 62.6 -0.6 42 32-80 300-342 (350)
68 KOG4739 Uncharacterized protei 95.8 0.0031 6.8E-08 59.7 0.7 45 34-81 5-49 (233)
69 PF04641 Rtf2: Rtf2 RING-finge 95.6 0.013 2.8E-07 56.2 3.9 54 30-84 111-165 (260)
70 COG5236 Uncharacterized conser 95.5 0.011 2.4E-07 58.8 3.5 52 26-80 55-108 (493)
71 PF14570 zf-RING_4: RING/Ubox 95.5 0.012 2.5E-07 42.8 2.5 45 35-79 1-47 (48)
72 COG5175 MOT2 Transcriptional r 95.3 0.011 2.4E-07 58.7 2.6 57 28-84 10-68 (480)
73 KOG1571 Predicted E3 ubiquitin 95.3 0.009 2E-07 59.5 2.0 47 29-81 302-348 (355)
74 KOG4185 Predicted E3 ubiquitin 95.3 0.018 4E-07 55.5 4.0 48 33-80 4-55 (296)
75 COG5222 Uncharacterized conser 95.2 0.022 4.8E-07 55.8 4.3 43 33-77 275-318 (427)
76 KOG0826 Predicted E3 ubiquitin 95.0 0.023 5.1E-07 56.1 3.9 51 28-80 296-346 (357)
77 PF10367 Vps39_2: Vacuolar sor 94.9 0.01 2.2E-07 48.2 0.9 33 30-63 76-108 (109)
78 KOG1940 Zn-finger protein [Gen 94.8 0.018 3.9E-07 55.9 2.5 55 27-82 153-208 (276)
79 KOG1952 Transcription factor N 94.6 0.025 5.5E-07 61.7 3.3 46 32-77 191-244 (950)
80 PHA03096 p28-like protein; Pro 94.4 0.024 5.2E-07 55.3 2.3 45 33-77 179-231 (284)
81 PF05883 Baculo_RING: Baculovi 93.8 0.046 9.9E-07 47.8 2.6 45 32-76 26-76 (134)
82 PF03854 zf-P11: P-11 zinc fin 93.8 0.027 5.9E-07 40.8 1.0 33 50-82 15-48 (50)
83 KOG2114 Vacuolar assembly/sort 93.6 0.035 7.6E-07 60.7 2.0 41 33-78 841-881 (933)
84 KOG2817 Predicted E3 ubiquitin 93.3 0.068 1.5E-06 54.1 3.3 43 33-75 335-380 (394)
85 KOG2932 E3 ubiquitin ligase in 93.1 0.036 7.9E-07 54.5 1.0 42 34-79 92-133 (389)
86 KOG1001 Helicase-like transcri 93.0 0.026 5.6E-07 61.1 -0.3 47 33-83 455-503 (674)
87 PF12906 RINGv: RING-variant d 92.8 0.069 1.5E-06 38.3 1.8 40 35-75 1-47 (47)
88 KOG0298 DEAD box-containing he 92.8 0.033 7.1E-07 63.2 0.2 44 33-78 1154-1197(1394)
89 PF14447 Prok-RING_4: Prokaryo 92.5 0.073 1.6E-06 39.7 1.6 47 32-83 7-53 (55)
90 PF08746 zf-RING-like: RING-li 92.4 0.065 1.4E-06 37.8 1.2 41 35-75 1-43 (43)
91 KOG4367 Predicted Zn-finger pr 91.9 0.093 2E-06 53.8 2.1 35 30-67 2-36 (699)
92 PF07800 DUF1644: Protein of u 91.2 0.21 4.6E-06 44.9 3.4 34 31-67 1-47 (162)
93 PHA02825 LAP/PHD finger-like p 91.2 0.2 4.4E-06 45.0 3.2 46 31-80 7-59 (162)
94 KOG3002 Zn finger protein [Gen 90.8 0.27 5.9E-06 48.4 4.0 42 32-80 48-91 (299)
95 PHA02862 5L protein; Provision 90.7 0.2 4.4E-06 44.4 2.7 46 32-81 2-54 (156)
96 KOG2034 Vacuolar sorting prote 89.8 0.16 3.4E-06 56.1 1.5 35 31-66 816-850 (911)
97 KOG3800 Predicted E3 ubiquitin 89.0 0.41 8.8E-06 46.8 3.6 53 34-86 2-57 (300)
98 KOG0801 Predicted E3 ubiquitin 89.0 0.14 3E-06 46.3 0.4 32 28-59 173-204 (205)
99 KOG4362 Transcriptional regula 87.4 0.15 3.2E-06 55.1 -0.6 48 32-82 21-71 (684)
100 KOG0827 Predicted E3 ubiquitin 86.8 0.049 1.1E-06 55.0 -4.2 50 33-82 197-247 (465)
101 COG5220 TFB3 Cdk activating ki 86.4 0.24 5.2E-06 47.4 0.3 50 31-80 9-64 (314)
102 PF10272 Tmpp129: Putative tra 85.6 0.49 1.1E-05 47.8 2.1 32 53-84 311-355 (358)
103 COG5109 Uncharacterized conser 85.3 0.61 1.3E-05 46.3 2.5 43 33-75 337-382 (396)
104 KOG1812 Predicted E3 ubiquitin 83.8 0.43 9.4E-06 48.5 0.8 37 32-68 146-183 (384)
105 KOG0309 Conserved WD40 repeat- 82.6 0.85 1.8E-05 49.9 2.4 41 33-74 1029-1069(1081)
106 KOG3161 Predicted E3 ubiquitin 82.2 0.51 1.1E-05 50.6 0.6 39 33-73 12-51 (861)
107 KOG0825 PHD Zn-finger protein 81.6 1 2.2E-05 49.5 2.6 50 30-79 94-153 (1134)
108 PF05290 Baculo_IE-1: Baculovi 81.2 1.3 2.7E-05 38.9 2.5 54 28-81 76-133 (140)
109 PF02891 zf-MIZ: MIZ/SP-RING z 81.1 1.7 3.6E-05 31.6 2.8 43 33-78 3-50 (50)
110 COG5183 SSM4 Protein involved 80.5 1.1 2.4E-05 49.4 2.4 53 29-82 9-68 (1175)
111 KOG1100 Predicted E3 ubiquitin 79.5 1 2.2E-05 42.1 1.6 38 35-79 161-199 (207)
112 KOG3053 Uncharacterized conser 79.4 1.5 3.1E-05 42.5 2.6 51 31-81 19-83 (293)
113 KOG2807 RNA polymerase II tran 78.6 1.5 3.2E-05 43.8 2.4 61 16-76 313-374 (378)
114 KOG3579 Predicted E3 ubiquitin 78.4 1.1 2.4E-05 43.9 1.4 36 31-69 267-306 (352)
115 KOG3899 Uncharacterized conser 77.3 1.2 2.6E-05 43.8 1.4 32 53-84 325-369 (381)
116 KOG1815 Predicted E3 ubiquitin 76.1 1.6 3.5E-05 45.0 2.0 38 29-68 67-104 (444)
117 KOG4718 Non-SMC (structural ma 75.4 1.5 3.2E-05 41.4 1.4 46 33-80 182-227 (235)
118 KOG2068 MOT2 transcription fac 73.7 2.3 5E-05 42.4 2.3 49 33-81 250-299 (327)
119 KOG3039 Uncharacterized conser 71.7 2.6 5.6E-05 40.7 2.1 33 32-67 43-75 (303)
120 PF14446 Prok-RING_1: Prokaryo 71.1 4.8 0.0001 30.0 3.0 39 32-74 5-44 (54)
121 KOG1812 Predicted E3 ubiquitin 66.2 3 6.5E-05 42.4 1.4 42 33-75 307-351 (384)
122 KOG2066 Vacuolar assembly/sort 65.3 2.3 5E-05 46.8 0.3 46 30-76 782-831 (846)
123 KOG1829 Uncharacterized conser 63.9 2.8 6.1E-05 44.9 0.7 24 49-75 533-556 (580)
124 KOG1609 Protein involved in mR 63.1 4 8.7E-05 39.1 1.5 49 32-80 78-134 (323)
125 KOG0824 Predicted E3 ubiquitin 61.4 2.6 5.7E-05 41.6 -0.1 48 32-81 105-152 (324)
126 PF07975 C1_4: TFIIH C1-like d 60.0 4 8.6E-05 30.1 0.7 42 35-76 2-50 (51)
127 PF14569 zf-UDP: Zinc-binding 58.4 11 0.00024 30.2 3.0 53 28-80 5-62 (80)
128 KOG0269 WD40 repeat-containing 58.3 7.4 0.00016 42.8 2.6 44 34-78 781-826 (839)
129 TIGR00622 ssl1 transcription f 55.3 7.4 0.00016 33.2 1.6 45 32-76 55-110 (112)
130 KOG0802 E3 ubiquitin ligase [P 53.1 6.6 0.00014 41.6 1.2 45 32-83 479-523 (543)
131 KOG2169 Zn-finger transcriptio 51.4 16 0.00035 39.6 3.9 57 34-95 308-371 (636)
132 PLN02189 cellulose synthase 51.3 13 0.00029 42.3 3.3 53 28-80 30-87 (1040)
133 PF04216 FdhE: Protein involve 51.2 3.2 6.9E-05 40.3 -1.3 46 30-78 170-220 (290)
134 KOG3842 Adaptor protein Pellin 49.5 15 0.00032 36.9 2.9 50 32-81 341-415 (429)
135 PF07191 zinc-ribbons_6: zinc- 48.2 2 4.2E-05 33.7 -2.7 41 32-80 1-41 (70)
136 PLN02436 cellulose synthase A 47.2 17 0.00037 41.7 3.3 53 27-80 31-89 (1094)
137 PF13901 DUF4206: Domain of un 46.4 13 0.00029 34.4 2.0 39 33-76 153-196 (202)
138 KOG3113 Uncharacterized conser 46.3 17 0.00037 35.3 2.7 50 33-84 112-162 (293)
139 PLN02638 cellulose synthase A 45.1 20 0.00044 41.1 3.5 50 31-80 16-70 (1079)
140 smart00249 PHD PHD zinc finger 44.3 12 0.00026 24.8 1.1 31 34-64 1-31 (47)
141 KOG2231 Predicted E3 ubiquitin 42.2 17 0.00037 39.7 2.3 43 34-79 2-51 (669)
142 PF04710 Pellino: Pellino; In 42.1 8.5 0.00018 39.5 0.0 50 32-81 328-402 (416)
143 KOG4185 Predicted E3 ubiquitin 41.5 4.5 9.7E-05 39.0 -2.0 48 31-78 206-265 (296)
144 PF04710 Pellino: Pellino; In 41.2 8.9 0.00019 39.3 0.0 47 32-81 277-340 (416)
145 KOG3005 GIY-YIG type nuclease 41.0 20 0.00044 34.9 2.4 48 33-80 183-243 (276)
146 KOG2789 Putative Zn-finger pro 40.5 12 0.00025 38.6 0.7 31 34-65 76-106 (482)
147 KOG3799 Rab3 effector RIM1 and 39.7 8.7 0.00019 34.0 -0.3 27 32-66 65-92 (169)
148 PLN02400 cellulose synthase 39.5 20 0.00044 41.1 2.4 54 27-80 31-89 (1085)
149 KOG1356 Putative transcription 38.9 8.7 0.00019 42.7 -0.5 48 32-80 229-282 (889)
150 COG5627 MMS21 DNA repair prote 38.0 28 0.0006 33.6 2.7 68 31-100 188-259 (275)
151 smart00132 LIM Zinc-binding do 37.7 29 0.00063 22.1 2.1 38 34-80 1-38 (39)
152 KOG3337 Protein similar to pre 33.2 14 0.0003 34.1 -0.1 22 244-265 141-163 (201)
153 TIGR01562 FdhE formate dehydro 33.1 9.5 0.00021 37.8 -1.2 46 32-78 184-233 (305)
154 PF01363 FYVE: FYVE zinc finge 33.0 17 0.00036 27.3 0.3 35 30-64 7-42 (69)
155 PF00628 PHD: PHD-finger; Int 31.5 16 0.00035 25.6 0.1 32 34-65 1-32 (51)
156 PF06906 DUF1272: Protein of u 30.9 93 0.002 23.5 4.0 47 33-82 6-54 (57)
157 PLN02915 cellulose synthase A 30.3 46 0.001 38.2 3.3 49 31-80 14-68 (1044)
158 PF02318 FYVE_2: FYVE-type zin 29.4 32 0.00068 29.0 1.5 48 29-77 51-102 (118)
159 PRK03564 formate dehydrogenase 29.3 17 0.00036 36.2 -0.3 45 31-77 186-234 (309)
160 COG3813 Uncharacterized protei 29.2 86 0.0019 25.0 3.7 51 34-86 7-58 (84)
161 PF05605 zf-Di19: Drought indu 29.1 29 0.00062 25.1 1.0 37 32-78 2-40 (54)
162 PF00412 LIM: LIM domain; Int 28.9 39 0.00085 23.9 1.7 40 35-83 1-40 (58)
163 KOG1815 Predicted E3 ubiquitin 28.6 16 0.00035 37.7 -0.5 36 33-68 227-267 (444)
164 PF09397 Ftsk_gamma: Ftsk gamm 27.3 27 0.0006 26.8 0.7 24 277-300 24-48 (65)
165 PF10146 zf-C4H2: Zinc finger- 26.6 49 0.0011 31.5 2.4 28 57-84 196-223 (230)
166 smart00064 FYVE Protein presen 26.5 54 0.0012 24.4 2.2 35 32-66 10-45 (68)
167 PLN02195 cellulose synthase A 26.2 65 0.0014 36.8 3.6 49 32-81 6-60 (977)
168 PF06844 DUF1244: Protein of u 25.2 44 0.00095 26.1 1.4 12 56-67 11-22 (68)
169 KOG3842 Adaptor protein Pellin 24.2 52 0.0011 33.1 2.1 44 32-78 290-350 (429)
170 KOG4218 Nuclear hormone recept 24.0 64 0.0014 32.9 2.7 15 28-42 11-25 (475)
171 cd07153 Fur_like Ferric uptake 23.6 22 0.00048 29.0 -0.5 32 269-300 16-49 (116)
172 KOG3726 Uncharacterized conser 23.0 44 0.00095 36.6 1.5 39 34-75 656-695 (717)
173 smart00647 IBR In Between Ring 22.9 20 0.00043 25.9 -0.8 34 33-66 19-59 (64)
174 PF13771 zf-HC5HC2H: PHD-like 22.6 27 0.00057 27.4 -0.2 38 25-64 29-68 (90)
175 KOG4451 Uncharacterized conser 22.6 60 0.0013 31.2 2.1 28 56-83 250-277 (286)
176 smart00843 Ftsk_gamma This dom 22.6 42 0.0009 25.8 0.9 24 277-300 23-47 (63)
177 PF10497 zf-4CXXC_R1: Zinc-fin 22.2 1.1E+02 0.0024 25.5 3.5 25 54-78 37-70 (105)
178 KOG2979 Protein involved in DN 22.1 50 0.0011 32.1 1.5 46 31-78 175-222 (262)
179 COG4847 Uncharacterized protei 21.9 65 0.0014 26.9 1.9 35 32-67 6-40 (103)
180 PF13832 zf-HC5HC2H_2: PHD-zin 21.2 71 0.0015 26.0 2.1 33 30-64 53-87 (110)
181 cd00065 FYVE FYVE domain; Zinc 20.4 70 0.0015 22.8 1.7 34 33-66 3-37 (57)
182 PF06937 EURL: EURL protein; 20.4 85 0.0018 30.8 2.7 40 34-73 32-74 (285)
183 PLN02248 cellulose synthase-li 20.0 78 0.0017 36.7 2.7 31 52-82 149-179 (1135)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.34 E-value=4.5e-13 Score=94.25 Aligned_cols=44 Identities=43% Similarity=1.099 Sum_probs=39.6
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR 76 (350)
+.|+||++.|..++.++.++|+|.||..||..|++.+..||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999998778888999999999999999999999999997
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.2e-11 Score=118.94 Aligned_cols=49 Identities=35% Similarity=0.978 Sum_probs=44.6
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcCC-CCCCCCcCCCC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISL 81 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~-sCPvCR~~l~~ 81 (350)
+.|.||+|.|..++.+++|||+|.||..||..|+.... .||+|++.+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence 59999999999999999999999999999999998874 59999986654
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.09 E-value=8.7e-11 Score=91.81 Aligned_cols=46 Identities=35% Similarity=0.988 Sum_probs=36.8
Q ss_pred CccccccccccccC----------CCCeeeecCCccccHHHHHHHHhcCCCCCCCC
Q 018812 31 CDDACSICLEEFSE----------SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (350)
Q Consensus 31 ~d~~C~ICle~f~~----------~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR 76 (350)
.++.|+||++.|.+ .-++.+.+|+|.||..||.+|++.+.+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 35569999999932 12345678999999999999999999999997
No 4
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.1e-10 Score=108.86 Aligned_cols=54 Identities=33% Similarity=0.738 Sum_probs=44.6
Q ss_pred CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhc---CCCCCCCCcCCCCCCcc
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLKDAT 85 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~---s~sCPvCR~~l~~kd~~ 85 (350)
+.....|.||||.-++ ++++.|||.|||.||.+|++. ++.||+|+..+..+...
T Consensus 44 ~~~~FdCNICLd~akd---PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv 100 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD---PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV 100 (230)
T ss_pred CCCceeeeeeccccCC---CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE
Confidence 4456799999999844 788899999999999999976 35799999988765443
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.04 E-value=1.7e-10 Score=108.95 Aligned_cols=54 Identities=28% Similarity=0.794 Sum_probs=43.6
Q ss_pred CCCCccccccccccccCCC-----CeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 28 QDSCDDACSICLEEFSESD-----PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~~~-----~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
....+..|+||++.+.+.. -..+++|+|.||..||.+|+..+.+||+||..+..
T Consensus 170 ~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~ 228 (238)
T PHA02929 170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS 228 (238)
T ss_pred cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence 3445789999999875422 13567899999999999999999999999998763
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.02 E-value=2e-10 Score=105.05 Aligned_cols=54 Identities=30% Similarity=0.722 Sum_probs=43.4
Q ss_pred CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhc----------------CCCCCCCCcCCCCCCcc
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----------------SSQCPMCWQPISLKDAT 85 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~----------------s~sCPvCR~~l~~kd~~ 85 (350)
...+.+|+||++.+.+ +++++|||.||+.||..|+.. ...||+||..+....+.
T Consensus 15 ~~~~~~CpICld~~~d---PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~Lv 84 (193)
T PLN03208 15 SGGDFDCNICLDQVRD---PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLV 84 (193)
T ss_pred CCCccCCccCCCcCCC---cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEE
Confidence 3447899999999843 577899999999999999852 24799999999865543
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=2.7e-10 Score=109.09 Aligned_cols=54 Identities=33% Similarity=0.850 Sum_probs=45.9
Q ss_pred CCCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCC
Q 018812 27 IQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (350)
Q Consensus 27 ~qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd 83 (350)
.....+..|.||++... .+..+||||.||+.||.+|+.....||+||..+.+..
T Consensus 234 ~i~~a~~kC~LCLe~~~---~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRS---NPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred cCCCCCCceEEEecCCC---CCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 34444678999999973 3788999999999999999999999999999887654
No 8
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.98 E-value=7.7e-10 Score=82.53 Aligned_cols=58 Identities=17% Similarity=0.377 Sum_probs=47.9
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHH
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEA 92 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~ 92 (350)
+..|+||++.+.+ +++++|||+||..||..|+..+..||+|+..+...++..+..+..
T Consensus 1 ~~~Cpi~~~~~~~---Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~~~l~~ 58 (63)
T smart00504 1 EFLCPISLEVMKD---PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIPNLALKS 58 (63)
T ss_pred CcCCcCCCCcCCC---CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhceeCHHHHH
Confidence 4689999999944 567799999999999999998889999999998777665544433
No 9
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.93 E-value=8.2e-10 Score=79.73 Aligned_cols=47 Identities=34% Similarity=0.822 Sum_probs=40.0
Q ss_pred CccccccccccccCCCCeeeecCCcc-ccHHHHHHHHhcCCCCCCCCcCCC
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~-FC~~CI~~Wl~~s~sCPvCR~~l~ 80 (350)
++..|.||++.+.+ +.+++|+|. ||..|+..|+.....||+||+++.
T Consensus 1 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 36799999999744 788899999 999999999999999999999875
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.93 E-value=6.1e-10 Score=76.51 Aligned_cols=39 Identities=41% Similarity=1.144 Sum_probs=33.3
Q ss_pred cccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCC
Q 018812 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (350)
Q Consensus 35 C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvC 75 (350)
|+||++.+ .++.++++|||.||..||..|++....||+|
T Consensus 1 C~iC~~~~--~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDEL--RDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB---SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcc--cCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999 4455789999999999999999998899998
No 11
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.89 E-value=1.3e-09 Score=87.64 Aligned_cols=52 Identities=42% Similarity=1.013 Sum_probs=41.1
Q ss_pred Ccccccccccccc----------CCCCeeeecCCccccHHHHHHHHhc---CCCCCCCCcCCCCC
Q 018812 31 CDDACSICLEEFS----------ESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK 82 (350)
Q Consensus 31 ~d~~C~ICle~f~----------~~~~~~vl~CgH~FC~~CI~~Wl~~---s~sCPvCR~~l~~k 82 (350)
.|+.|.||...|. +.-++....|+|.||.+||.+|+.. +..||+||+.+..+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k 84 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK 84 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence 3788999998884 1123455689999999999999975 46899999988654
No 12
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.87 E-value=1.5e-09 Score=76.32 Aligned_cols=38 Identities=32% Similarity=0.854 Sum_probs=29.2
Q ss_pred cccccccccCCCCeeeecCCccccHHHHHHHHhcC----CCCCCC
Q 018812 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMC 75 (350)
Q Consensus 35 C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s----~sCPvC 75 (350)
|+||+++|.+ ++.++|||.||..||..|++.. ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999954 7778999999999999999753 469988
No 13
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=9.5e-10 Score=98.96 Aligned_cols=53 Identities=32% Similarity=0.674 Sum_probs=44.6
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcc
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT 85 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~ 85 (350)
-..|+|||+.+.... +.-++|||+||..||...+.....||+|++.|..+.+.
T Consensus 131 ~~~CPiCl~~~sek~-~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~ 183 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKV-PVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFH 183 (187)
T ss_pred ccCCCceecchhhcc-ccccccchhHHHHHHHHHHHhCCCCCCcccccchhhhe
Confidence 468999999995532 24479999999999999999999999999988877653
No 14
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.84 E-value=2.7e-09 Score=107.40 Aligned_cols=60 Identities=25% Similarity=0.531 Sum_probs=48.6
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHH
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~v 93 (350)
.+..|+||++.|.. +++++|+|.||..||..|+.....||+|+..+....+..+..+..+
T Consensus 25 ~~l~C~IC~d~~~~---PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~i 84 (397)
T TIGR00599 25 TSLRCHICKDFFDV---PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEI 84 (397)
T ss_pred cccCCCcCchhhhC---ccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHH
Confidence 36899999999943 5678999999999999999988899999999876655555444443
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.82 E-value=3.8e-09 Score=72.06 Aligned_cols=44 Identities=41% Similarity=1.090 Sum_probs=37.5
Q ss_pred ccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCC
Q 018812 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPI 79 (350)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l 79 (350)
.|+||++.+ .++..+++|+|.||..|+..|+.. ...||+|+..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 455666679999999999999987 67899998754
No 16
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=2.5e-09 Score=103.16 Aligned_cols=49 Identities=37% Similarity=0.895 Sum_probs=44.6
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHh-cCCCCCCCCcCCCC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISL 81 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~-~s~sCPvCR~~l~~ 81 (350)
.+|.||++.|...+..+++||.|.||..|+..|+. -+..||+||..+++
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 68999999998888899999999999999999998 56789999998864
No 17
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=3.3e-09 Score=104.66 Aligned_cols=52 Identities=31% Similarity=0.881 Sum_probs=43.0
Q ss_pred CCCcccccccccccc-CC---------CCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812 29 DSCDDACSICLEEFS-ES---------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 29 d~~d~~C~ICle~f~-~~---------~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~ 80 (350)
.+.|..|.||+|.+. .. ..++.++|||.||.+|++-|++++.+||+||.++.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 345789999999842 21 12577899999999999999999999999999854
No 18
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.77 E-value=3.5e-09 Score=103.36 Aligned_cols=61 Identities=26% Similarity=0.637 Sum_probs=53.1
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHHHH
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQ 95 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~ve~ 95 (350)
-+.|.||.++|.. +.+++|+|.||..||+.++..+..||.|+.++...++..+.++..+.+
T Consensus 23 lLRC~IC~eyf~i---p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~n~il~Eiv~ 83 (442)
T KOG0287|consen 23 LLRCGICFEYFNI---PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRNNRILDEIVK 83 (442)
T ss_pred HHHHhHHHHHhcC---ceeccccchHHHHHHHHHhccCCCCCceecccchhhhhhhhHHHHHHH
Confidence 5789999999944 788899999999999999999999999999999888877776665544
No 19
>PHA02926 zinc finger-like protein; Provisional
Probab=98.75 E-value=4.3e-09 Score=97.91 Aligned_cols=58 Identities=26% Similarity=0.584 Sum_probs=44.2
Q ss_pred hccCCCCCccccccccccccCC------CCeeeecCCccccHHHHHHHHhcC------CCCCCCCcCCCC
Q 018812 24 EGGIQDSCDDACSICLEEFSES------DPSTVTSCKHEFHLQCVLEWCQRS------SQCPMCWQPISL 81 (350)
Q Consensus 24 ~g~~qd~~d~~C~ICle~f~~~------~~~~vl~CgH~FC~~CI~~Wl~~s------~sCPvCR~~l~~ 81 (350)
+...+...|.+|+||++.+..+ ....+.+|+|.||..||..|.... ..||+||..+..
T Consensus 162 e~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 162 EDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred HHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 3444566689999999986332 124667999999999999999753 459999998764
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.70 E-value=1e-08 Score=70.65 Aligned_cols=39 Identities=44% Similarity=1.162 Sum_probs=33.4
Q ss_pred cccccccccCCCCeeeecCCccccHHHHHHHHh--cCCCCCCC
Q 018812 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ--RSSQCPMC 75 (350)
Q Consensus 35 C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~--~s~sCPvC 75 (350)
|+||++.+. ++..+++|+|.||..||..|++ ....||+|
T Consensus 1 C~iC~~~~~--~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE--DPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS--SEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc--CCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999983 3445899999999999999998 45679998
No 21
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.5e-09 Score=106.41 Aligned_cols=88 Identities=25% Similarity=0.538 Sum_probs=65.2
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCcchHHHHHHHHHHhhhcCCCCCCCCcc
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQELLEAVEQERSIRANPPRNATIF 110 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~~~~~ll~~ve~er~~r~~ps~~a~i~ 110 (350)
+..|+|||+++ +...+...|.|.||..||..-+.. .+.||.||+.+..+ +.++.+|.+.+.|.
T Consensus 43 ~v~c~icl~ll--k~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk--------------rsLr~Dp~fdaLis 106 (381)
T KOG0311|consen 43 QVICPICLSLL--KKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK--------------RSLRIDPNFDALIS 106 (381)
T ss_pred hhccHHHHHHH--HhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc--------------ccCCCCccHHHHHH
Confidence 67999999999 444566789999999999877765 57899999988754 45555666555554
Q ss_pred CC-CCCCCcccccCCCCCCCchHHHH
Q 018812 111 HH-PTFGDFELQHLPVGASDTDLEEH 135 (350)
Q Consensus 111 ~~-p~~~~fe~q~l~~~~dDseleer 135 (350)
.. +.+..|+..++.+.+.|..+..|
T Consensus 107 ~i~~sie~~e~~q~~~~ekd~~~~~q 132 (381)
T KOG0311|consen 107 KIYPSIEEYEAPQPRFMEKDDSAQIQ 132 (381)
T ss_pred HHhccHHHHhccchhHHhhHHHHhHH
Confidence 43 45667777777777777776666
No 22
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.67 E-value=1.6e-08 Score=71.27 Aligned_cols=44 Identities=36% Similarity=0.870 Sum_probs=38.6
Q ss_pred ccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCc
Q 018812 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (350)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~ 77 (350)
.|+||++.|.....+.+++|||.||..||..+......||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999965567899999999999999999866778999975
No 23
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=9.7e-09 Score=104.87 Aligned_cols=54 Identities=39% Similarity=0.714 Sum_probs=44.8
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcC-----CCCCCCCcCCCCCCcchHH
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-----SQCPMCWQPISLKDATSQE 88 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s-----~sCPvCR~~l~~kd~~~~~ 88 (350)
+..|||||+.... +..+.|||+||+.||.++|... ..||+||..|..+++.+..
T Consensus 186 ~~~CPICL~~~~~---p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSV---PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCc---ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 7899999999733 5667799999999999998654 4799999999998876543
No 24
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.58 E-value=7.3e-08 Score=75.12 Aligned_cols=60 Identities=18% Similarity=0.361 Sum_probs=46.1
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCcchHHHHHHH
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQELLEAV 93 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~~~~~ll~~v 93 (350)
+++.|+||.+.+.+ +++++|||.|+..||..|+.. ...||+|+..+...++.++..+...
T Consensus 3 ~~f~CpIt~~lM~d---PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~ 63 (73)
T PF04564_consen 3 DEFLCPITGELMRD---PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSA 63 (73)
T ss_dssp GGGB-TTTSSB-SS---EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHH
T ss_pred cccCCcCcCcHhhC---ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHH
Confidence 36799999999955 777899999999999999998 7899999999998888877655543
No 25
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.54 E-value=7.6e-08 Score=63.30 Aligned_cols=38 Identities=39% Similarity=1.095 Sum_probs=32.8
Q ss_pred cccccccccCCCCeeeecCCccccHHHHHHHHh-cCCCCCCC
Q 018812 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMC 75 (350)
Q Consensus 35 C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~-~s~sCPvC 75 (350)
|+||++.. ..+.+++|+|.||..|+..|+. ....||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999985 3477789999999999999998 56679987
No 26
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3.7e-08 Score=103.05 Aligned_cols=52 Identities=33% Similarity=0.756 Sum_probs=43.7
Q ss_pred CCccccccccccccCCCC--eeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 30 SCDDACSICLEEFSESDP--STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~--~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
+.++.|+||+|.+..... ++.++|+|.||..|+..|+++..+||+||..+..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYD 342 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence 347899999999954322 6778999999999999999999999999995543
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=4.9e-08 Score=92.74 Aligned_cols=50 Identities=36% Similarity=0.830 Sum_probs=42.4
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHH-HHhcCCC-CCCCCcCCCCCCc
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLE-WCQRSSQ-CPMCWQPISLKDA 84 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~-Wl~~s~s-CPvCR~~l~~kd~ 84 (350)
|..|.||++.... +..++|||.||+.||.. |-.++.. ||+||+...++..
T Consensus 215 d~kC~lC~e~~~~---ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 215 DYKCFLCLEEPEV---PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccceeeeecccCC---cccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 6789999999733 67789999999999999 9877766 9999998876643
No 28
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.41 E-value=1.5e-07 Score=74.56 Aligned_cols=36 Identities=31% Similarity=0.700 Sum_probs=31.5
Q ss_pred eeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCC
Q 018812 48 STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (350)
Q Consensus 48 ~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd 83 (350)
+..-.|.|.||.+||.+|+..+..||+|++++...+
T Consensus 49 v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~~ 84 (88)
T COG5194 49 VVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLAD 84 (88)
T ss_pred EEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEec
Confidence 345689999999999999999999999999887543
No 29
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.36 E-value=2.8e-07 Score=65.24 Aligned_cols=38 Identities=42% Similarity=0.960 Sum_probs=23.1
Q ss_pred ccccccccc-CCCCeeeecCCccccHHHHHHHHhcC----CCCC
Q 018812 35 CSICLEEFS-ESDPSTVTSCKHEFHLQCVLEWCQRS----SQCP 73 (350)
Q Consensus 35 C~ICle~f~-~~~~~~vl~CgH~FC~~CI~~Wl~~s----~sCP 73 (350)
|+||.+ |. +..++++|+|||.||..||..|+... ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 64 34578889999999999999999853 3576
No 30
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.33 E-value=1.5e-07 Score=71.82 Aligned_cols=58 Identities=28% Similarity=0.693 Sum_probs=29.8
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHH
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~v 93 (350)
-..|++|.+.+ +.|+.+..|.|.||..||..-+. ..||+|..+...+|...+..+..+
T Consensus 7 lLrCs~C~~~l--~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD~~~NrqLd~~ 64 (65)
T PF14835_consen 7 LLRCSICFDIL--KEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQDIQINRQLDSM 64 (65)
T ss_dssp TTS-SSS-S----SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS----HHHHHH
T ss_pred hcCCcHHHHHh--cCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHHHHhhhhhhcc
Confidence 36899999999 56677889999999999977543 459999999999998888776653
No 31
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.30 E-value=3.1e-07 Score=88.45 Aligned_cols=50 Identities=24% Similarity=0.425 Sum_probs=43.6
Q ss_pred CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
-+.-+.|-||-+.|.. +..++|||.||..||+.++..+..||+||.....
T Consensus 22 LDs~lrC~IC~~~i~i---p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 22 LDSMLRCRICDCRISI---PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred chhHHHhhhhhheeec---ceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 3346789999999954 7788999999999999999999999999987654
No 32
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.2e-07 Score=83.87 Aligned_cols=59 Identities=31% Similarity=0.638 Sum_probs=44.0
Q ss_pred CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHH
Q 018812 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~v 93 (350)
.++..|+||++.|.. + .+++|+|.||..||..++.....||.||. ... .+..+..+..+
T Consensus 11 ~~~~~C~iC~~~~~~--p-~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~-~~~-~~~~n~~l~~~ 69 (386)
T KOG2177|consen 11 QEELTCPICLEYFRE--P-VLLPCGHNFCRACLTRSWEGPLSCPVCRP-PSR-NLRPNVLLANL 69 (386)
T ss_pred cccccChhhHHHhhc--C-ccccccchHhHHHHHHhcCCCcCCcccCC-chh-ccCccHHHHHH
Confidence 347899999999943 4 88899999999999999885568999995 222 33344444443
No 33
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2e-07 Score=73.31 Aligned_cols=52 Identities=38% Similarity=0.893 Sum_probs=38.9
Q ss_pred Ccccccccccccc----------CCCCeeeecCCccccHHHHHHHHhc---CCCCCCCCcCCCCC
Q 018812 31 CDDACSICLEEFS----------ESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK 82 (350)
Q Consensus 31 ~d~~C~ICle~f~----------~~~~~~vl~CgH~FC~~CI~~Wl~~---s~sCPvCR~~l~~k 82 (350)
.+++|-||.-.|. +.-|.+.--|.|.||.+||.+|+.. +..||+||+.+..+
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFK 83 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEec
Confidence 3558888888874 2123344589999999999999964 45799999987643
No 34
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.26 E-value=6.5e-07 Score=87.48 Aligned_cols=56 Identities=29% Similarity=0.480 Sum_probs=40.4
Q ss_pred cccccccccc--ccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCcchH
Q 018812 32 DDACSICLEE--FSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQ 87 (350)
Q Consensus 32 d~~C~ICle~--f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~~~~ 87 (350)
+..||||... +...-...+.+|||.||..||..++.. ...||.|+..+....+..+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q 61 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQ 61 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccc
Confidence 5689999995 322111233379999999999996644 5689999999887665443
No 35
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=2e-06 Score=82.20 Aligned_cols=55 Identities=31% Similarity=0.784 Sum_probs=43.2
Q ss_pred CCCCccccccccccccCCC-------CeeeecCCccccHHHHHHHHh--cCCCCCCCCcCCCCC
Q 018812 28 QDSCDDACSICLEEFSESD-------PSTVTSCKHEFHLQCVLEWCQ--RSSQCPMCWQPISLK 82 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~~~-------~~~vl~CgH~FC~~CI~~Wl~--~s~sCPvCR~~l~~k 82 (350)
+..+|..|.||-..+.... ....+.|+|+||..||+.|+. ++.+||.|++.+..+
T Consensus 220 khl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 220 KHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 3455789999998874332 346789999999999999985 467899999887654
No 36
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=6e-06 Score=68.52 Aligned_cols=51 Identities=25% Similarity=0.676 Sum_probs=38.8
Q ss_pred Ccccccccccccc------------CCCC--eeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 31 CDDACSICLEEFS------------ESDP--STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 31 ~d~~C~ICle~f~------------~~~~--~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
.-+.|+||..-+- ..+. +..-.|.|.||..||.+|++....||+|.+.+..
T Consensus 45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF 109 (114)
T ss_pred eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence 3468999987552 1111 2335899999999999999999999999887654
No 37
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.83 E-value=2.8e-06 Score=65.98 Aligned_cols=50 Identities=38% Similarity=0.842 Sum_probs=24.2
Q ss_pred cccccccccccc-CCCCeee----ecCCccccHHHHHHHHhc---C--------CCCCCCCcCCCC
Q 018812 32 DDACSICLEEFS-ESDPSTV----TSCKHEFHLQCVLEWCQR---S--------SQCPMCWQPISL 81 (350)
Q Consensus 32 d~~C~ICle~f~-~~~~~~v----l~CgH~FC~~CI~~Wl~~---s--------~sCPvCR~~l~~ 81 (350)
+..|.||+..+. .+..+.+ ..|++.||..||.+|+.. . ..||.|+.+|..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 578999999875 2222222 279999999999999963 1 259999988754
No 38
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=6.8e-06 Score=87.69 Aligned_cols=51 Identities=27% Similarity=0.652 Sum_probs=43.1
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHh-cCCCCCCCCcCCCCCCcc
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLKDAT 85 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~-~s~sCPvCR~~l~~kd~~ 85 (350)
-++|+.|-.-+++ .+++.|+|.||..||...+. +...||.|...|...|+.
T Consensus 643 ~LkCs~Cn~R~Kd---~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~ 694 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD---AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVH 694 (698)
T ss_pred ceeCCCccCchhh---HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccc
Confidence 3689999988855 67789999999999998885 567899999999877654
No 39
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=9.9e-06 Score=82.82 Aligned_cols=50 Identities=34% Similarity=0.847 Sum_probs=38.8
Q ss_pred ccccccccccccCC----CC----------eeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCC
Q 018812 32 DDACSICLEEFSES----DP----------STVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL 81 (350)
Q Consensus 32 d~~C~ICle~f~~~----~~----------~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~ 81 (350)
...|+||+..+... +. -.++||.|.||..|+..|... +-.||+||.++..
T Consensus 571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 45799999887411 11 235699999999999999985 5589999998863
No 40
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.6e-05 Score=79.07 Aligned_cols=59 Identities=34% Similarity=0.810 Sum_probs=44.8
Q ss_pred hccCCCCCccccccccccccCCC-----CeeeecCCccccHHHHHHHHh--c-----CCCCCCCCcCCCCC
Q 018812 24 EGGIQDSCDDACSICLEEFSESD-----PSTVTSCKHEFHLQCVLEWCQ--R-----SSQCPMCWQPISLK 82 (350)
Q Consensus 24 ~g~~qd~~d~~C~ICle~f~~~~-----~~~vl~CgH~FC~~CI~~Wl~--~-----s~sCPvCR~~l~~k 82 (350)
.+..+...+.+|.||++.+.... -.++.+|.|.||..||..|-+ + .+.||.||......
T Consensus 153 ~~a~~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v 223 (344)
T KOG1039|consen 153 SFALQKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV 223 (344)
T ss_pred ccCcCccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence 35556677899999999985533 123467999999999999983 3 46899999876543
No 41
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=9.2e-06 Score=60.26 Aligned_cols=47 Identities=32% Similarity=0.716 Sum_probs=37.9
Q ss_pred CccccccccccccCCCCeeeecCCc-cccHHHHHHHHh-cCCCCCCCCcCCC
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQ-RSSQCPMCWQPIS 80 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH-~FC~~CI~~Wl~-~s~sCPvCR~~l~ 80 (350)
.+++|.||++...+ .++..||| -.|+.|-.+.++ .+..||+||.++.
T Consensus 6 ~~dECTICye~pvd---sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 6 WSDECTICYEHPVD---SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cccceeeeccCcch---HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 45899999998744 56678999 578999877665 6789999999875
No 42
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.71 E-value=3.4e-05 Score=55.96 Aligned_cols=42 Identities=29% Similarity=0.769 Sum_probs=32.3
Q ss_pred ccccccccccCCCCeeeecCC-----ccccHHHHHHHHhcC--CCCCCCC
Q 018812 34 ACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQRS--SQCPMCW 76 (350)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~Cg-----H~FC~~CI~~Wl~~s--~sCPvCR 76 (350)
.|-||++... .+.+.+.||. |.||..|+.+|+..+ ..||+|+
T Consensus 1 ~CrIC~~~~~-~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD-EGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCC-CCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998333 3445677885 899999999999654 4899994
No 43
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.66 E-value=1.5e-05 Score=86.42 Aligned_cols=49 Identities=31% Similarity=0.917 Sum_probs=38.2
Q ss_pred cccccccccccc--CCCCe--eeecCCccccHHHHHHHHhcC--CCCCCCCcCCC
Q 018812 32 DDACSICLEEFS--ESDPS--TVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPIS 80 (350)
Q Consensus 32 d~~C~ICle~f~--~~~~~--~vl~CgH~FC~~CI~~Wl~~s--~sCPvCR~~l~ 80 (350)
-.+|+||+..+. +..-| +...|+|.||..|+..|+..+ ..||+||..+.
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 468999999874 11112 456799999999999999864 68999998765
No 44
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=3.6e-05 Score=74.73 Aligned_cols=48 Identities=23% Similarity=0.528 Sum_probs=39.9
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcC-CCCCCCCcCCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLK 82 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s-~sCPvCR~~l~~k 82 (350)
+.+|+||+... ..++.+.|+|.||+.||.--.... ..|++||.+|...
T Consensus 7 ~~eC~IC~nt~---n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTG---NCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccC---CcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 56899999886 446788999999999998777654 4699999998754
No 45
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=4.2e-05 Score=76.38 Aligned_cols=49 Identities=24% Similarity=0.760 Sum_probs=35.1
Q ss_pred cccccccccccCCCCe-eeecCCccccHHHHHHHHhcC---CCCCCCCcCCCC
Q 018812 33 DACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQRS---SQCPMCWQPISL 81 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~-~vl~CgH~FC~~CI~~Wl~~s---~sCPvCR~~l~~ 81 (350)
..|.||.+.+.....+ .+-.|||.||..|+.+|+..- ..||+|+..+..
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 4799996665332222 233599999999999999863 579999955443
No 46
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.51 E-value=2.6e-05 Score=76.42 Aligned_cols=48 Identities=29% Similarity=0.658 Sum_probs=42.2
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
-.+|.+|-.+| .|..+++.|-|.||..||..++...+.||+|...+-.
T Consensus 15 ~itC~LC~GYl--iDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 15 HITCRLCGGYL--IDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred ceehhhcccee--ecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 46999999999 4566788999999999999999999999999876654
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.50 E-value=2.1e-05 Score=83.99 Aligned_cols=52 Identities=19% Similarity=0.477 Sum_probs=43.0
Q ss_pred CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
.....|+||+..+.++......+|+|.||..||..|...-.+||+||..|..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence 4456799999888665444556899999999999999999999999998764
No 48
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=6.8e-05 Score=75.98 Aligned_cols=58 Identities=26% Similarity=0.647 Sum_probs=47.4
Q ss_pred HhhhccCCCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 21 AFVEGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 21 a~v~g~~qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
+...++.+...+..|.||+..| .+++.++|||.||..||.+-+.....||.||..+..
T Consensus 73 ~~~s~~~~~~sef~c~vc~~~l---~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 73 ALLSGPEEIRSEFECCVCSRAL---YPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred hhhccCccccchhhhhhhHhhc---CCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 3344455556789999999998 347777999999999999988888899999998875
No 49
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.38 E-value=5.8e-05 Score=76.58 Aligned_cols=47 Identities=34% Similarity=0.846 Sum_probs=37.0
Q ss_pred ccccccccccccCCCC-eeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812 32 DDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 32 d~~C~ICle~f~~~~~-~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~ 80 (350)
-.+|+|||+-+..... +..+.|.|.||..|+..|.. .+||+||.-..
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 4589999999844321 24468999999999999974 68999987655
No 50
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00012 Score=72.45 Aligned_cols=46 Identities=33% Similarity=0.787 Sum_probs=39.5
Q ss_pred ccccccccccccCCCCeeeecCCc-cccHHHHHHHHhcCCCCCCCCcCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH-~FC~~CI~~Wl~~s~sCPvCR~~l~ 80 (350)
-.+|-||+....+ ..++||.| -.|..|-+..--..+.||+||+++.
T Consensus 290 gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 4689999999855 78899999 6789999887767889999999875
No 51
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.28 E-value=0.00031 Score=70.65 Aligned_cols=49 Identities=24% Similarity=0.650 Sum_probs=40.4
Q ss_pred ccccccccccCCCCeeeecCCccccHHHHHHHHhc--CCCCCCCCcCCCCCCcc
Q 018812 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPISLKDAT 85 (350)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~--s~sCPvCR~~l~~kd~~ 85 (350)
-|-||-+.=+ .+++-+|||..|..|+..|-.. ...||.||..|.-....
T Consensus 371 LCKICaendK---dvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 371 LCKICAENDK---DVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPV 421 (563)
T ss_pred HHHHhhccCC---CcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccce
Confidence 5899998853 4788899999999999999754 57899999999865443
No 52
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.27 E-value=0.00016 Score=81.30 Aligned_cols=72 Identities=38% Similarity=0.698 Sum_probs=50.7
Q ss_pred CCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcC----------CCCCCCCcCCCC---CCcc--hHHHHHH
Q 018812 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----------SQCPMCWQPISL---KDAT--SQELLEA 92 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s----------~sCPvCR~~l~~---kd~~--~~~ll~~ 92 (350)
||. |+.|.||+..-....|.+.+.|+|.||++|.+..+++. -.||+|+.+|.. +|+. ..++++.
T Consensus 3483 QD~-DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~LkDLldPiKel~ed 3561 (3738)
T KOG1428|consen 3483 QDA-DDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLKDLLDPIKELYED 3561 (3738)
T ss_pred ccc-CceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHHHHHHHHHHHHHHH
Confidence 443 78999999876555677889999999999999887653 269999998864 3322 2344555
Q ss_pred HHHHhhhc
Q 018812 93 VEQERSIR 100 (350)
Q Consensus 93 ve~er~~r 100 (350)
+.....+|
T Consensus 3562 V~~KA~MR 3569 (3738)
T KOG1428|consen 3562 VRRKALMR 3569 (3738)
T ss_pred HHHHHhhh
Confidence 44444433
No 53
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.24 E-value=0.00028 Score=68.68 Aligned_cols=51 Identities=33% Similarity=0.816 Sum_probs=42.0
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhc-----------------------CCCCCCCCcCCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----------------------SSQCPMCWQPISLK 82 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-----------------------s~sCPvCR~~l~~k 82 (350)
...|.|||.-|.+++..+++.|-|.||..|+.+++.. .-.||+||..|...
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 3589999999988777899999999999999988631 12599999988754
No 54
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00018 Score=69.82 Aligned_cols=59 Identities=31% Similarity=0.501 Sum_probs=46.8
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHHH
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVE 94 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~ve 94 (350)
+.|-||..+|.. ++++.|+|.||..|...-++....|++|.+.+..-.....+++..+.
T Consensus 242 f~c~icr~~f~~---pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~~~akeL~~~L~ 300 (313)
T KOG1813|consen 242 FKCFICRKYFYR---PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSFNVAKELLVSLK 300 (313)
T ss_pred cccccccccccc---chhhcCCceeehhhhccccccCCcceecccccccccchHHHHHHHHH
Confidence 469999999944 67889999999999999999999999998877655444455544443
No 55
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00029 Score=70.96 Aligned_cols=55 Identities=27% Similarity=0.786 Sum_probs=40.9
Q ss_pred CccccccccccccCC-C-CeeeecCCccccHHHHHHHHhc--CCCCCCCCcCCCCCCcc
Q 018812 31 CDDACSICLEEFSES-D-PSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPISLKDAT 85 (350)
Q Consensus 31 ~d~~C~ICle~f~~~-~-~~~vl~CgH~FC~~CI~~Wl~~--s~sCPvCR~~l~~kd~~ 85 (350)
+..+|+||++.+... + ....+.|+|.|..+||+.|+-+ ...||.|...-...++.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~ 61 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIR 61 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHH
Confidence 456899999988532 2 3455899999999999999953 35799997665544443
No 56
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.13 E-value=0.00019 Score=72.67 Aligned_cols=54 Identities=30% Similarity=0.710 Sum_probs=44.1
Q ss_pred CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcc
Q 018812 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT 85 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~ 85 (350)
.++..|+||...+. +++..+.|+|.||..|+..|+..+..||.|+..+......
T Consensus 19 ~~~l~C~~C~~vl~--~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLR--DPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCcccccccc--CCCCCCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 34789999999994 4444369999999999999999999999998887654433
No 57
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.11 E-value=0.00022 Score=53.42 Aligned_cols=41 Identities=37% Similarity=0.829 Sum_probs=29.2
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhc--CCCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPM 74 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~--s~sCPv 74 (350)
...|||.+..| .+|++-..|+|.|-...|.+|++. ...||+
T Consensus 11 ~~~CPiT~~~~--~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPF--EDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB---SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChh--hCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 57999999999 566677799999999999999944 457998
No 58
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00077 Score=63.36 Aligned_cols=56 Identities=27% Similarity=0.546 Sum_probs=44.0
Q ss_pred CCccccccccccccCCCCeeeecCCccccHHHHHHHHhc--------CCCCCCCCcCCCCCCcch
Q 018812 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--------SSQCPMCWQPISLKDATS 86 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~--------s~sCPvCR~~l~~kd~~~ 86 (350)
+.+..|..|-..+..++.++ +.|.|.||++|+.+|... ..+||.|..+|.+.....
T Consensus 48 DY~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nlv 111 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLV 111 (299)
T ss_pred CCCCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcccc
Confidence 34568999999997766654 589999999999999754 357999999887654433
No 59
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.94 E-value=0.00035 Score=64.53 Aligned_cols=46 Identities=26% Similarity=0.656 Sum_probs=39.9
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~ 80 (350)
...|.||-..|.. ++++.|||.||..|...-.+....|-+|-+...
T Consensus 196 PF~C~iCKkdy~s---pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYES---PVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccc---hhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 5689999999944 788899999999999998888899999977544
No 60
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00086 Score=64.59 Aligned_cols=50 Identities=24% Similarity=0.589 Sum_probs=39.3
Q ss_pred CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhc--CCCCCCCCcCCC
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQPIS 80 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~--s~sCPvCR~~l~ 80 (350)
...+.+|++|-+.. .-|.++.+|+|.||..||..-+.. +..||.|-....
T Consensus 236 ~t~~~~C~~Cg~~P--tiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPP--TIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCC--CCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34577999999887 345566789999999999876654 479999977654
No 61
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.00099 Score=66.22 Aligned_cols=53 Identities=21% Similarity=0.490 Sum_probs=44.1
Q ss_pred cCCCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 26 GIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 26 ~~qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
..-+.+|+.|+||+--... .+..||+|.-|..||.+.+-..+.|=.|+..+..
T Consensus 416 ~lp~sEd~lCpICyA~pi~---Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 416 DLPDSEDNLCPICYAGPIN---AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred CCCCcccccCcceecccch---hhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 3446778999999976533 4667999999999999999999999999887764
No 62
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.48 E-value=0.001 Score=69.08 Aligned_cols=52 Identities=23% Similarity=0.687 Sum_probs=41.6
Q ss_pred CCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhc-----CCCCCCCCcCCCCC
Q 018812 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----SSQCPMCWQPISLK 82 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-----s~sCPvCR~~l~~k 82 (350)
.+..+..|.+|-+.-.+ .....|.|.||..||.++... +.+||+|-..+.-.
T Consensus 532 enk~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cccCceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 34446799999998743 677899999999999999853 46899998877654
No 63
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.0038 Score=59.51 Aligned_cols=54 Identities=15% Similarity=0.351 Sum_probs=46.0
Q ss_pred ccccccccccccCCCCe-eeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcc
Q 018812 32 DDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT 85 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~-~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~ 85 (350)
...|+||.+.+.+..+. ++-+|||+||..|...+......||+|-.++..+++.
T Consensus 221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence 45799999999776554 4459999999999999999999999999999887653
No 64
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.0049 Score=56.22 Aligned_cols=62 Identities=35% Similarity=0.719 Sum_probs=42.1
Q ss_pred hHHHhhhccCCCCCccccccccccccCCCCee----eecCCccccHHHHHHHHhcC-----------CCCCCCCcCCCCC
Q 018812 18 SAAAFVEGGIQDSCDDACSICLEEFSESDPST----VTSCKHEFHLQCVLEWCQRS-----------SQCPMCWQPISLK 82 (350)
Q Consensus 18 ~~~a~v~g~~qd~~d~~C~ICle~f~~~~~~~----vl~CgH~FC~~CI~~Wl~~s-----------~sCPvCR~~l~~k 82 (350)
-++++.++ +++-..|.||+-+-.++..+- -..|+..||.-|+..|++.- ..||+|..++..+
T Consensus 154 ~a~a~Lek---dd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 154 CAAAFLEK---DDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred cHHHhcCc---chhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 34555433 233457899987754443322 24899999999999999641 3699999888654
No 65
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.0084 Score=60.73 Aligned_cols=47 Identities=23% Similarity=0.414 Sum_probs=37.3
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhc--------CCCCCCCCcCC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--------SSQCPMCWQPI 79 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~--------s~sCPvCR~~l 79 (350)
..|.||++...-....+.++|+|+||..|+..++.. .-.||-|...-
T Consensus 185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~ 239 (445)
T KOG1814|consen 185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGS 239 (445)
T ss_pred ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcc
Confidence 479999999865567788999999999999999853 23588776543
No 66
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.96 E-value=0.0023 Score=64.32 Aligned_cols=48 Identities=27% Similarity=0.646 Sum_probs=38.5
Q ss_pred CccccccccccccCCC-CeeeecCCccccHHHHHHHHhcC--CCCCCCCcC
Q 018812 31 CDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQP 78 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~-~~~vl~CgH~FC~~CI~~Wl~~s--~sCPvCR~~ 78 (350)
.++.|..|-+.+.-++ ....+||.|.||..|+.+++.++ .+||.||+-
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 4678999999985443 34568999999999999999765 579999853
No 67
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.002 Score=62.60 Aligned_cols=42 Identities=26% Similarity=0.659 Sum_probs=33.4
Q ss_pred ccccccccccccCCCCeeeecCCc-cccHHHHHHHHhcCCCCCCCCcCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH-~FC~~CI~~Wl~~s~sCPvCR~~l~ 80 (350)
+.-|.||++...+ ...|+||| +-|.+|-... ..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~D---CvfLeCGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLECGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcc---eEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence 6689999999844 67789999 6788886443 48999998764
No 68
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.78 E-value=0.0031 Score=59.67 Aligned_cols=45 Identities=31% Similarity=0.723 Sum_probs=34.4
Q ss_pred ccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
.|..|...-. +++..++.|.|+||..|...-. ...||+|++++..
T Consensus 5 hCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~--~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 5 HCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS--PDVCPLCKKSIRI 49 (233)
T ss_pred EeccccccCC-CCceeeeechhhhhhhhcccCC--ccccccccceeee
Confidence 5887776554 6788999999999999964422 2389999998753
No 69
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.56 E-value=0.013 Score=56.21 Aligned_cols=54 Identities=22% Similarity=0.465 Sum_probs=41.5
Q ss_pred CCccccccccccccCCCC-eeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCc
Q 018812 30 SCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~-~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~ 84 (350)
.....|||+...|..... +.+-+|||+|+..+|.+.- ....||+|-.+|...|.
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCE
Confidence 345689999999944333 3456999999999999984 45679999998886553
No 70
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.54 E-value=0.011 Score=58.77 Aligned_cols=52 Identities=21% Similarity=0.466 Sum_probs=41.2
Q ss_pred cCCCCCccccccccccccCCCCeeeecCCccccHHHHHHH--HhcCCCCCCCCcCCC
Q 018812 26 GIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW--CQRSSQCPMCWQPIS 80 (350)
Q Consensus 26 ~~qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~W--l~~s~sCPvCR~~l~ 80 (350)
..+|+++..|.||.+.+.- ..++||+|..|..|..+. |...+.||+||..+.
T Consensus 55 ddtDEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 55 DDTDEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cccccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 3356667789999998733 678999999999998654 456789999998653
No 71
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.47 E-value=0.012 Score=42.79 Aligned_cols=45 Identities=27% Similarity=0.674 Sum_probs=22.7
Q ss_pred cccccccccCCCCe-eeecCCccccHHHHHHHHh-cCCCCCCCCcCC
Q 018812 35 CSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPI 79 (350)
Q Consensus 35 C~ICle~f~~~~~~-~vl~CgH~FC~~CI~~Wl~-~s~sCPvCR~~l 79 (350)
|++|.+.+...+.- .-=+|++.+|..|....+. ....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78999998433322 2236889999999888876 478999999864
No 72
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.33 E-value=0.011 Score=58.73 Aligned_cols=57 Identities=19% Similarity=0.489 Sum_probs=39.7
Q ss_pred CCCCccccccccccccCCCCe-eeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCc
Q 018812 28 QDSCDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDA 84 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~~~~~-~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~ 84 (350)
.+++|+.|+.|++.+...|.- .--+||...|.-|....-+. +..||.||..+...+.
T Consensus 10 sedeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 10 SEDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred cccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 345677899999998654433 23478988888886554443 5789999987765543
No 73
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.009 Score=59.55 Aligned_cols=47 Identities=34% Similarity=0.675 Sum_probs=34.3
Q ss_pred CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
....+.|.||++...+ ...++|||.-| |.... +....||+||+.|..
T Consensus 302 ~~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRL 348 (355)
T ss_pred cCCCCceEEecCCccc---eeeecCCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence 3446789999999844 67779999877 76443 234569999987753
No 74
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.28 E-value=0.018 Score=55.51 Aligned_cols=48 Identities=29% Similarity=0.665 Sum_probs=39.2
Q ss_pred cccccccccccCCC---CeeeecCCccccHHHHHHHHhcC-CCCCCCCcCCC
Q 018812 33 DACSICLEEFSESD---PSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPIS 80 (350)
Q Consensus 33 ~~C~ICle~f~~~~---~~~vl~CgH~FC~~CI~~Wl~~s-~sCPvCR~~l~ 80 (350)
..|-||-++|...+ .++++.|||.||..|+...+... -.||.||....
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~ 55 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTE 55 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCccc
Confidence 57999999997553 36788999999999998887654 46999999853
No 75
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.21 E-value=0.022 Score=55.75 Aligned_cols=43 Identities=23% Similarity=0.569 Sum_probs=34.9
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHh-cCCCCCCCCc
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQ 77 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~-~s~sCPvCR~ 77 (350)
+.|+.|-.++ .++.....|+|.||..||...|. ..+.||.|..
T Consensus 275 LkCplc~~Ll--rnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLL--RNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhh--hCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 7899999998 45566668999999999986664 5678999943
No 76
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.023 Score=56.13 Aligned_cols=51 Identities=20% Similarity=0.540 Sum_probs=40.8
Q ss_pred CCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~ 80 (350)
.......|+||+... .++.++..-|-+||+.||..++...+.||+-..++.
T Consensus 296 l~~~~~~CpvClk~r--~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKR--QNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS 346 (357)
T ss_pred CCCccccChhHHhcc--CCCceEEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence 334467899999887 455566667999999999999999999998766554
No 77
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.88 E-value=0.01 Score=48.17 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=27.1
Q ss_pred CCccccccccccccCCCCeeeecCCccccHHHHH
Q 018812 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVL 63 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~ 63 (350)
..+..|+||-..|.. ....+.||+|.||..|+.
T Consensus 76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 446789999999955 456778999999999974
No 78
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=94.80 E-value=0.018 Score=55.94 Aligned_cols=55 Identities=27% Similarity=0.472 Sum_probs=43.1
Q ss_pred CCCCCccccccccccccCCC-CeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 27 IQDSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 27 ~qd~~d~~C~ICle~f~~~~-~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
.+...+..||||.+.+.... .+..++|+|..|..|+.+.......||+|.+ +...
T Consensus 153 ~e~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~ 208 (276)
T KOG1940|consen 153 VERSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDM 208 (276)
T ss_pred hhhcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHH
Confidence 34444567999999875543 4577899999999999999887899999988 5443
No 79
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.64 E-value=0.025 Score=61.70 Aligned_cols=46 Identities=37% Similarity=0.925 Sum_probs=35.8
Q ss_pred ccccccccccccCCCCe-eeecCCccccHHHHHHHHhcC-------CCCCCCCc
Q 018812 32 DDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQRS-------SQCPMCWQ 77 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~-~vl~CgH~FC~~CI~~Wl~~s-------~sCPvCR~ 77 (350)
..+|.||++.+...+++ ....|.|+||+.||..|.... -.||.|..
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 56899999999665443 335789999999999998642 25999974
No 80
>PHA03096 p28-like protein; Provisional
Probab=94.40 E-value=0.024 Score=55.34 Aligned_cols=45 Identities=29% Similarity=0.600 Sum_probs=32.2
Q ss_pred cccccccccccCCC-----CeeeecCCccccHHHHHHHHhcC---CCCCCCCc
Q 018812 33 DACSICLEEFSESD-----PSTVTSCKHEFHLQCVLEWCQRS---SQCPMCWQ 77 (350)
Q Consensus 33 ~~C~ICle~f~~~~-----~~~vl~CgH~FC~~CI~~Wl~~s---~sCPvCR~ 77 (350)
..|.||++....+. -..+..|.|.||..||..|-... ..||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 58999999875321 23456899999999999997542 34555544
No 81
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=93.81 E-value=0.046 Score=47.80 Aligned_cols=45 Identities=18% Similarity=0.449 Sum_probs=33.0
Q ss_pred ccccccccccccCCCCeeeecCC------ccccHHHHHHHHhcCCCCCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCK------HEFHLQCVLEWCQRSSQCPMCW 76 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~Cg------H~FC~~CI~~Wl~~s~sCPvCR 76 (350)
..+|.||++.+...+.++.++|+ |.||..|+.+|-.....=|.=|
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR 76 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNR 76 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCccc
Confidence 57999999999663455556675 8999999999965444445443
No 82
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=93.80 E-value=0.027 Score=40.80 Aligned_cols=33 Identities=33% Similarity=0.815 Sum_probs=23.6
Q ss_pred eecCC-ccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 50 VTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 50 vl~Cg-H~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
+..|. |..|..|+...+..+..||+|+.+++.+
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk 48 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK 48 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence 44686 9999999999999999999999988653
No 83
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.65 E-value=0.035 Score=60.67 Aligned_cols=41 Identities=27% Similarity=0.725 Sum_probs=33.8
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~ 78 (350)
..|.+|--.+ .-|.+-..|+|.||.+|+. .....||.|+..
T Consensus 841 skCs~C~~~L--dlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTL--DLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCcc--ccceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 5899999888 4566778999999999997 455789999763
No 84
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.33 E-value=0.068 Score=54.05 Aligned_cols=43 Identities=21% Similarity=0.519 Sum_probs=37.5
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcC---CCCCCC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS---SQCPMC 75 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s---~sCPvC 75 (350)
..|||=.+--.+.+||..+.|||+.+.+-|.+..+.. ..||+|
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYC 380 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYC 380 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCC
Confidence 4799988887778899999999999999999988764 479999
No 85
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=0.036 Score=54.52 Aligned_cols=42 Identities=26% Similarity=0.617 Sum_probs=28.6
Q ss_pred ccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCC
Q 018812 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPI 79 (350)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l 79 (350)
.|--|--.+ .-.-++.+|+|+||++|.+. ...+.||.|-..+
T Consensus 92 fCd~Cd~PI--~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 92 FCDRCDFPI--AIYGRMIPCKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred eecccCCcc--eeeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence 455564443 22346679999999999643 3467899996554
No 86
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.98 E-value=0.026 Score=61.11 Aligned_cols=47 Identities=32% Similarity=0.783 Sum_probs=38.1
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcC--CCCCCCCcCCCCCC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLKD 83 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s--~sCPvCR~~l~~kd 83 (350)
..|.||++ . +.+.++.|+|.||..|+...++.. ..||.||..+..+.
T Consensus 455 ~~c~ic~~-~---~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-L---DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-c---ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 79999999 3 557888999999999998887653 36999988776543
No 87
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=92.84 E-value=0.069 Score=38.31 Aligned_cols=40 Identities=30% Similarity=0.917 Sum_probs=26.5
Q ss_pred cccccccccCCCCeeeecCC-----ccccHHHHHHHHhc--CCCCCCC
Q 018812 35 CSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQR--SSQCPMC 75 (350)
Q Consensus 35 C~ICle~f~~~~~~~vl~Cg-----H~FC~~CI~~Wl~~--s~sCPvC 75 (350)
|-||++...+.. +.+.||. ...|..|+.+|+.. ...|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 679999875433 4556774 37799999999974 4579887
No 88
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.78 E-value=0.033 Score=63.24 Aligned_cols=44 Identities=32% Similarity=0.713 Sum_probs=37.5
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~ 78 (350)
..|.||++.+.. .-.+..|+|.||..|+..|+..+..||+|+..
T Consensus 1154 ~~c~ic~dil~~--~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1154 FVCEICLDILRN--QGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred cchHHHHHHHHh--cCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 389999999953 24456899999999999999999999999743
No 89
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.51 E-value=0.073 Score=39.71 Aligned_cols=47 Identities=28% Similarity=0.592 Sum_probs=33.6
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd 83 (350)
+..|-.|...- ....+++|+|..|..|..- .+.+-||+|-.++...+
T Consensus 7 ~~~~~~~~~~~---~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVG---TKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccc---cccccccccceeeccccCh--hhccCCCCCCCcccCCC
Confidence 44566665553 3356789999999999643 44578999998887654
No 90
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=92.37 E-value=0.065 Score=37.83 Aligned_cols=41 Identities=24% Similarity=0.717 Sum_probs=22.2
Q ss_pred cccccccccCCCCeeeecCCccccHHHHHHHHhcCC--CCCCC
Q 018812 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS--QCPMC 75 (350)
Q Consensus 35 C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~--sCPvC 75 (350)
|.+|.+++..+..-....|.-.+|..|+..++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888875432112235888999999999997654 69988
No 91
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=91.91 E-value=0.093 Score=53.83 Aligned_cols=35 Identities=17% Similarity=0.451 Sum_probs=29.0
Q ss_pred CCccccccccccccCCCCeeeecCCccccHHHHHHHHh
Q 018812 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ 67 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~ 67 (350)
++++.|+||...|.+ +++++|+|..|..|.+..+.
T Consensus 2 eeelkc~vc~~f~~e---piil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYRE---PIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccC---ceEeecccHHHHHHHHhhcc
Confidence 357899999999944 78889999999999876553
No 92
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.23 E-value=0.21 Score=44.85 Aligned_cols=34 Identities=24% Similarity=0.527 Sum_probs=22.0
Q ss_pred CccccccccccccCCCCeeeecC------------Cc-cccHHHHHHHHh
Q 018812 31 CDDACSICLEEFSESDPSTVTSC------------KH-EFHLQCVLEWCQ 67 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C------------gH-~FC~~CI~~Wl~ 67 (350)
+|.+|+||||..-+ .++|-| +. .-|.-||.++.+
T Consensus 1 ed~~CpICme~PHN---AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHN---AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCc---eEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 36799999998733 344433 22 235679988853
No 93
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=91.19 E-value=0.2 Score=45.02 Aligned_cols=46 Identities=30% Similarity=0.770 Sum_probs=34.0
Q ss_pred CccccccccccccCCCCeeeecCCc-----cccHHHHHHHHhcC--CCCCCCCcCCC
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKH-----EFHLQCVLEWCQRS--SQCPMCWQPIS 80 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH-----~FC~~CI~~Wl~~s--~sCPvCR~~l~ 80 (350)
.+..|=||.+... + -..||.. ..|..|+.+|+..+ ..|++|..++.
T Consensus 7 ~~~~CRIC~~~~~--~--~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYD--V--VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCC--C--ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 4679999998852 2 1246654 56999999999764 57999988764
No 94
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=90.76 E-value=0.27 Score=48.41 Aligned_cols=42 Identities=29% Similarity=0.664 Sum_probs=32.5
Q ss_pred ccccccccccccCCCCeeeecC--CccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSC--KHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~C--gH~FC~~CI~~Wl~~s~sCPvCR~~l~ 80 (350)
=++||||.+.+.. ++. .| ||.-|..|-. +....||.|+.++.
T Consensus 48 lleCPvC~~~l~~---Pi~-QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 48 LLDCPVCFNPLSP---PIF-QCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hccCchhhccCcc---cce-ecCCCcEehhhhhh---hhcccCCccccccc
Confidence 3689999999933 333 56 7999999964 44678999999987
No 95
>PHA02862 5L protein; Provisional
Probab=90.68 E-value=0.2 Score=44.41 Aligned_cols=46 Identities=26% Similarity=0.665 Sum_probs=34.4
Q ss_pred ccccccccccccCCCCeeeecCC-----ccccHHHHHHHHhcC--CCCCCCCcCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQRS--SQCPMCWQPISL 81 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~Cg-----H~FC~~CI~~Wl~~s--~sCPvCR~~l~~ 81 (350)
++.|=||++.-.+ . ..||. ...|..|+.+|+..+ ..|++|+.++.-
T Consensus 2 ~diCWIC~~~~~e--~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVCDE--R--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcCCC--C--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4689999998522 2 34664 478999999999753 579999987653
No 96
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.75 E-value=0.16 Score=56.06 Aligned_cols=35 Identities=29% Similarity=0.604 Sum_probs=29.5
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHH
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC 66 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl 66 (350)
-++.|.||...|.. .+-.+.+|||.||..||.+..
T Consensus 816 p~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhc-CcceeeeccchHHHHHHHHHH
Confidence 36799999998855 566788999999999998775
No 97
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=89.00 E-value=0.41 Score=46.83 Aligned_cols=53 Identities=21% Similarity=0.418 Sum_probs=36.9
Q ss_pred cccccccccc-C-CCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCcch
Q 018812 34 ACSICLEEFS-E-SDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATS 86 (350)
Q Consensus 34 ~C~ICle~f~-~-~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~~~ 86 (350)
.|++|....- . .-...+-+|+|..|..|+...+.. ...||.|-..+....+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr~ 57 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFRV 57 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccch
Confidence 6999976531 1 111234599999999999998865 468999987766544443
No 98
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.99 E-value=0.14 Score=46.29 Aligned_cols=32 Identities=25% Similarity=0.530 Sum_probs=26.9
Q ss_pred CCCCccccccccccccCCCCeeeecCCccccH
Q 018812 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHL 59 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~ 59 (350)
..+...+|.||||++..++.+..|||...||.
T Consensus 173 L~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 173 LKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred hcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 34445689999999999898889999999985
No 99
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=87.40 E-value=0.15 Score=55.13 Aligned_cols=48 Identities=29% Similarity=0.634 Sum_probs=38.1
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhc---CCCCCCCCcCCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISLK 82 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~---s~sCPvCR~~l~~k 82 (350)
+.+|+||+..+.. +..+.|.|.||..|+..-+.. ...||+|+..+...
T Consensus 21 ~lEc~ic~~~~~~---p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~ 71 (684)
T KOG4362|consen 21 ILECPICLEHVKE---PSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR 71 (684)
T ss_pred hccCCceeEEeec---cchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence 6899999999844 477899999999998766644 45799998766543
No 100
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.84 E-value=0.049 Score=55.01 Aligned_cols=50 Identities=22% Similarity=0.543 Sum_probs=41.1
Q ss_pred cccccccccccCC-CCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 33 DACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 33 ~~C~ICle~f~~~-~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
..|.||.+.|+.. +....+.|+|.+|..||..|+.....||.|+..+...
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 4699999998642 3345568999999999999999988999999887653
No 101
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=86.39 E-value=0.24 Score=47.40 Aligned_cols=50 Identities=24% Similarity=0.519 Sum_probs=34.5
Q ss_pred CccccccccccccCCCCee--ee-cCCccccHHHHHHHHhcC-CCCC--CCCcCCC
Q 018812 31 CDDACSICLEEFSESDPST--VT-SCKHEFHLQCVLEWCQRS-SQCP--MCWQPIS 80 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~--vl-~CgH~FC~~CI~~Wl~~s-~sCP--vCR~~l~ 80 (350)
.|..||||..+---...+. +- .|-|..|..|+.+.+... ..|| -|-+.+.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 4679999987531111122 22 499999999999998765 4799 7865444
No 102
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=85.63 E-value=0.49 Score=47.75 Aligned_cols=32 Identities=25% Similarity=0.794 Sum_probs=23.8
Q ss_pred CCccccHHHHHHHHhc-------------CCCCCCCCcCCCCCCc
Q 018812 53 CKHEFHLQCVLEWCQR-------------SSQCPMCWQPISLKDA 84 (350)
Q Consensus 53 CgH~FC~~CI~~Wl~~-------------s~sCPvCR~~l~~kd~ 84 (350)
|....|..|+-+|+.. +..||+||+.+...|.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 4455688999999853 2369999999876553
No 103
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=85.28 E-value=0.61 Score=46.27 Aligned_cols=43 Identities=21% Similarity=0.515 Sum_probs=36.5
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcC---CCCCCC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS---SQCPMC 75 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s---~sCPvC 75 (350)
..||+--+.-.+.+||+.+.|||+.-..-+....+.. ..||+|
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 4799887777777899999999999999998887653 569999
No 104
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.81 E-value=0.43 Score=48.48 Aligned_cols=37 Identities=30% Similarity=0.652 Sum_probs=26.8
Q ss_pred cccccccc-ccccCCCCeeeecCCccccHHHHHHHHhc
Q 018812 32 DDACSICL-EEFSESDPSTVTSCKHEFHLQCVLEWCQR 68 (350)
Q Consensus 32 d~~C~ICl-e~f~~~~~~~vl~CgH~FC~~CI~~Wl~~ 68 (350)
..+|.||+ +.....+-..+..|+|.||..|+.++++.
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 46899999 44322122235789999999999999874
No 105
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=82.63 E-value=0.85 Score=49.85 Aligned_cols=41 Identities=27% Similarity=0.687 Sum_probs=30.4
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPM 74 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPv 74 (350)
..|.||--.+. +.......|+|+.|..|..+|+.....||.
T Consensus 1029 ~~C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 34666654442 223455789999999999999999889985
No 106
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.20 E-value=0.51 Score=50.62 Aligned_cols=39 Identities=28% Similarity=0.562 Sum_probs=29.5
Q ss_pred cccccccccccCC-CCeeeecCCccccHHHHHHHHhcCCCCC
Q 018812 33 DACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCP 73 (350)
Q Consensus 33 ~~C~ICle~f~~~-~~~~vl~CgH~FC~~CI~~Wl~~s~sCP 73 (350)
+.|+||+..|... -.++-+-|||..|.+|+..... .+||
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp 51 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP 51 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC
Confidence 5799998776433 3456679999999999977653 5777
No 107
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=81.57 E-value=1 Score=49.47 Aligned_cols=50 Identities=14% Similarity=0.261 Sum_probs=33.2
Q ss_pred CCccccccccccccCCC-Ceee---ecCCccccHHHHHHHHhc------CCCCCCCCcCC
Q 018812 30 SCDDACSICLEEFSESD-PSTV---TSCKHEFHLQCVLEWCQR------SSQCPMCWQPI 79 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~-~~~v---l~CgH~FC~~CI~~Wl~~------s~sCPvCR~~l 79 (350)
...++|.||.-.|.+.+ -.-. -.|+|.||..||..|..+ .-.|++|..-|
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 34567888887775411 1122 359999999999999864 23577776533
No 108
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=81.15 E-value=1.3 Score=38.95 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=38.0
Q ss_pred CCCCccccccccccccCCCCee-eecCCccccHHHHHHHHhc---CCCCCCCCcCCCC
Q 018812 28 QDSCDDACSICLEEFSESDPST-VTSCKHEFHLQCVLEWCQR---SSQCPMCWQPISL 81 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~~~~~~-vl~CgH~FC~~CI~~Wl~~---s~sCPvCR~~l~~ 81 (350)
.|..=-+|.||.|...+..-.. ---||-..|..|....|+. ...||+|+..+..
T Consensus 76 ~d~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 76 LDPKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred cCCCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 3433458999999874422111 1259999999999877764 5689999988764
No 109
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=81.08 E-value=1.7 Score=31.57 Aligned_cols=43 Identities=23% Similarity=0.582 Sum_probs=21.3
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHh---cC--CCCCCCCcC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RS--SQCPMCWQP 78 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~---~s--~sCPvCR~~ 78 (350)
+.|+|....+ .-|++...|.|.-|++- ..|+. +. -.||+|.++
T Consensus 3 L~CPls~~~i--~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRI--RIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB---SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEE--EeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 5799999888 45677789999866542 33432 22 369999763
No 110
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=80.55 E-value=1.1 Score=49.38 Aligned_cols=53 Identities=30% Similarity=0.699 Sum_probs=38.5
Q ss_pred CCCccccccccccccCCCCeeeecCCc-----cccHHHHHHHHhcC--CCCCCCCcCCCCC
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKH-----EFHLQCVLEWCQRS--SQCPMCWQPISLK 82 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH-----~FC~~CI~~Wl~~s--~sCPvCR~~l~~k 82 (350)
++++..|-||.-.=..++|.- -||+. ..|..|+.+|+.-+ +.|-+|..++..+
T Consensus 9 N~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred CccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 345679999998755545443 36653 68999999999754 5699999877543
No 111
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.51 E-value=1 Score=42.12 Aligned_cols=38 Identities=26% Similarity=0.574 Sum_probs=27.5
Q ss_pred cccccccccCCCCeeeecCCc-cccHHHHHHHHhcCCCCCCCCcCC
Q 018812 35 CSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQRSSQCPMCWQPI 79 (350)
Q Consensus 35 C~ICle~f~~~~~~~vl~CgH-~FC~~CI~~Wl~~s~sCPvCR~~l 79 (350)
|-+|.+.- ..+.++||.| .+|..|-.. -..||+|+...
T Consensus 161 Cr~C~~~~---~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGERE---ATVLLLPCRHLCLCGICDES----LRICPICRSPK 199 (207)
T ss_pred ceecCcCC---ceEEeecccceEeccccccc----CccCCCCcChh
Confidence 88887764 3477889997 678888432 45699997654
No 112
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.45 E-value=1.5 Score=42.51 Aligned_cols=51 Identities=22% Similarity=0.602 Sum_probs=35.4
Q ss_pred CccccccccccccCCCCe-eeecCC-----ccccHHHHHHHHhcC--------CCCCCCCcCCCC
Q 018812 31 CDDACSICLEEFSESDPS-TVTSCK-----HEFHLQCVLEWCQRS--------SQCPMCWQPISL 81 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~-~vl~Cg-----H~FC~~CI~~Wl~~s--------~sCPvCR~~l~~ 81 (350)
.|..|-||+..=.+.... -+-||. |..|..|+..|+..+ ..||-|+.....
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 466899999875442221 234663 889999999999543 359999876543
No 113
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=78.61 E-value=1.5 Score=43.82 Aligned_cols=61 Identities=26% Similarity=0.423 Sum_probs=41.8
Q ss_pred hhhHHHhhhccCCC-CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCC
Q 018812 16 MTSAAAFVEGGIQD-SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (350)
Q Consensus 16 ~~~~~a~v~g~~qd-~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR 76 (350)
+..+.+|++-.... ..+..|-.|.+........+.-.|+++||.+|-.-.-..-..||-|.
T Consensus 313 L~PL~~F~Eip~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 313 LFPLKPFVEIPETEYNGSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred hcCCcchhhccccccCCCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 34445565544432 22445999988776655566678999999999655555567899996
No 114
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.40 E-value=1.1 Score=43.94 Aligned_cols=36 Identities=22% Similarity=0.640 Sum_probs=28.0
Q ss_pred CccccccccccccCCCCeeeecC----CccccHHHHHHHHhcC
Q 018812 31 CDDACSICLEEFSESDPSTVTSC----KHEFHLQCVLEWCQRS 69 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~C----gH~FC~~CI~~Wl~~s 69 (350)
.-+.|.+|.|-|.+ .....| .|.||+.|-++-++.+
T Consensus 267 apLcCTLC~ERLED---THFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLED---THFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred Cceeehhhhhhhcc---CceeecCCCcccceecccCHHHHHhh
Confidence 35789999999965 333356 6999999999988754
No 115
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.35 E-value=1.2 Score=43.84 Aligned_cols=32 Identities=25% Similarity=0.680 Sum_probs=24.3
Q ss_pred CCccccHHHHHHHHhc-------------CCCCCCCCcCCCCCCc
Q 018812 53 CKHEFHLQCVLEWCQR-------------SSQCPMCWQPISLKDA 84 (350)
Q Consensus 53 CgH~FC~~CI~~Wl~~-------------s~sCPvCR~~l~~kd~ 84 (350)
|....|..|+-+|+.. +-+||+||+.+.-.|.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv 369 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDV 369 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeee
Confidence 5667788999999742 3579999999876543
No 116
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.10 E-value=1.6 Score=45.00 Aligned_cols=38 Identities=24% Similarity=0.511 Sum_probs=30.9
Q ss_pred CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhc
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR 68 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~ 68 (350)
+..+..|.||.+.+.. ....+.|+|.||..|+..++..
T Consensus 67 ~~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CCccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 3456899999999843 4566799999999999998865
No 117
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=75.43 E-value=1.5 Score=41.37 Aligned_cols=46 Identities=24% Similarity=0.590 Sum_probs=36.4
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~ 80 (350)
..|.+|...+.. ....-.|+-.||..|+..++++...||.|.--+.
T Consensus 182 k~Cn~Ch~LvIq--g~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQ--GIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHhhe--eeccCcccchhhhHHHHHHhcccCcCCchhcccC
Confidence 379999998733 2455677888999999999999999999954443
No 118
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=73.70 E-value=2.3 Score=42.37 Aligned_cols=49 Identities=24% Similarity=0.636 Sum_probs=37.6
Q ss_pred cccccccccccCCCCeee-ecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 33 DACSICLEEFSESDPSTV-TSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~v-l~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
..|+||.+.....+...+ .+|++..|+.|+..-...+..||.||++...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCcccc
Confidence 579999998743333333 3788889999998888888999999976554
No 119
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.73 E-value=2.6 Score=40.69 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=28.0
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHh
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ 67 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~ 67 (350)
=+.|+.||..+.+ +++++=||.||..||++++-
T Consensus 43 FdcCsLtLqPc~d---Pvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 43 FDCCSLTLQPCRD---PVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cceeeeecccccC---CccCCCCeeeeHHHHHHHHH
Confidence 4689999999944 67779999999999999863
No 120
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=71.10 E-value=4.8 Score=30.01 Aligned_cols=39 Identities=21% Similarity=0.574 Sum_probs=28.8
Q ss_pred ccccccccccccCCCCe-eeecCCccccHHHHHHHHhcCCCCCC
Q 018812 32 DDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQRSSQCPM 74 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~-~vl~CgH~FC~~CI~~Wl~~s~sCPv 74 (350)
...|++|-+.|++++.+ +-..|+-.||..|... ...|-.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 46899999999765554 4578999999999432 445544
No 121
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.21 E-value=3 Score=42.44 Aligned_cols=42 Identities=26% Similarity=0.616 Sum_probs=30.6
Q ss_pred cccccccccccCC---CCeeeecCCccccHHHHHHHHhcCCCCCCC
Q 018812 33 DACSICLEEFSES---DPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (350)
Q Consensus 33 ~~C~ICle~f~~~---~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvC 75 (350)
..|++|.-.+.-. ...+.. |+|.||+.|...|......|..|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 4788887765322 123444 99999999999998887777666
No 122
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.32 E-value=2.3 Score=46.77 Aligned_cols=46 Identities=30% Similarity=0.609 Sum_probs=33.5
Q ss_pred CCccccccccccccCC----CCeeeecCCccccHHHHHHHHhcCCCCCCCC
Q 018812 30 SCDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~----~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR 76 (350)
..+..|.-|++..... +...++.|+|.||..|+.-...++. |-.|-
T Consensus 782 ~~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 782 SVEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred eehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhh
Confidence 3466899999986422 3467789999999999976665544 66663
No 123
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=63.90 E-value=2.8 Score=44.86 Aligned_cols=24 Identities=33% Similarity=0.920 Sum_probs=18.4
Q ss_pred eeecCCccccHHHHHHHHhcCCCCCCC
Q 018812 49 TVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (350)
Q Consensus 49 ~vl~CgH~FC~~CI~~Wl~~s~sCPvC 75 (350)
....|+++||..|+. ..+..||.|
T Consensus 533 rC~~C~avfH~~C~~---r~s~~CPrC 556 (580)
T KOG1829|consen 533 RCSTCLAVFHKKCLR---RKSPCCPRC 556 (580)
T ss_pred eHHHHHHHHHHHHHh---ccCCCCCch
Confidence 456899999999953 344559999
No 124
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=63.06 E-value=4 Score=39.07 Aligned_cols=49 Identities=27% Similarity=0.593 Sum_probs=34.8
Q ss_pred ccccccccccccCCCC-eeeecCC-----ccccHHHHHHHHh--cCCCCCCCCcCCC
Q 018812 32 DDACSICLEEFSESDP-STVTSCK-----HEFHLQCVLEWCQ--RSSQCPMCWQPIS 80 (350)
Q Consensus 32 d~~C~ICle~f~~~~~-~~vl~Cg-----H~FC~~CI~~Wl~--~s~sCPvCR~~l~ 80 (350)
+..|-||......... ..+.+|. +..|..|+..|+. ....|.+|+..+.
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 3679999997633211 3455664 5679999999997 4567999987654
No 125
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.41 E-value=2.6 Score=41.63 Aligned_cols=48 Identities=29% Similarity=0.665 Sum_probs=39.0
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
.+.|.||...+.. +...-.|.|.||..|...|......||.|+.....
T Consensus 105 ~~~~~~~~g~l~v--pt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 105 HDICYICYGKLTV--PTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred ccceeeeeeeEEe--cccccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 6789999998833 23344699999999999999999999999876654
No 126
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=59.95 E-value=4 Score=30.07 Aligned_cols=42 Identities=24% Similarity=0.585 Sum_probs=21.3
Q ss_pred cccccccccCCC-------CeeeecCCccccHHHHHHHHhcCCCCCCCC
Q 018812 35 CSICLEEFSESD-------PSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (350)
Q Consensus 35 C~ICle~f~~~~-------~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR 76 (350)
|.-|+..|.... ...-..|++.||.+|=.-.-+.-..||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 556777774421 123358999999999543334556799883
No 127
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=58.36 E-value=11 Score=30.20 Aligned_cols=53 Identities=15% Similarity=0.387 Sum_probs=20.9
Q ss_pred CCCCccccccccccccCCC--Ce--eeecCCccccHHHHHH-HHhcCCCCCCCCcCCC
Q 018812 28 QDSCDDACSICLEEFSESD--PS--TVTSCKHEFHLQCVLE-WCQRSSQCPMCWQPIS 80 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~~~--~~--~vl~CgH~FC~~CI~~-Wl~~s~sCPvCR~~l~ 80 (350)
++-....|.||-+.+.... .+ ....|+--.|..|+.- ....++.||-|+..+.
T Consensus 5 k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 5 KNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred hhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 4444568999999874221 12 3357888899999853 3345678999986654
No 128
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=58.35 E-value=7.4 Score=42.82 Aligned_cols=44 Identities=20% Similarity=0.403 Sum_probs=32.9
Q ss_pred ccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCC--CCcC
Q 018812 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPM--CWQP 78 (350)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPv--CR~~ 78 (350)
.|.+|-..+.- .......|+|.-|..|+..|+.....||. |-..
T Consensus 781 ~CtVC~~vi~G-~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~ 826 (839)
T KOG0269|consen 781 KCTVCDLVIRG-VDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHL 826 (839)
T ss_pred Cceeecceeee-eEeecccccccccHHHHHHHHhcCCCCccccCCcc
Confidence 68888776632 22334579999999999999999888877 6443
No 129
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.32 E-value=7.4 Score=33.20 Aligned_cols=45 Identities=22% Similarity=0.467 Sum_probs=34.0
Q ss_pred ccccccccccccCCC-----------CeeeecCCccccHHHHHHHHhcCCCCCCCC
Q 018812 32 DDACSICLEEFSESD-----------PSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (350)
Q Consensus 32 d~~C~ICle~f~~~~-----------~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR 76 (350)
...|--|+..|.... .-.-..|++.||.+|=.-+-+.-..||-|.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 346999999885320 112468999999999888777778899995
No 130
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.12 E-value=6.6 Score=41.61 Aligned_cols=45 Identities=31% Similarity=0.880 Sum_probs=36.7
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd 83 (350)
.+.|.||+... ..++++|. |..|+..|+..+..||+|...+...+
T Consensus 479 ~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 479 NDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred cCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhccc
Confidence 56899999987 24666788 78999999999999999988776543
No 131
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=51.44 E-value=16 Score=39.61 Aligned_cols=57 Identities=21% Similarity=0.409 Sum_probs=33.7
Q ss_pred ccccccccccCCCCeeeecCCccccHHHHHH-HHh-cC-----CCCCCCCcCCCCCCcchHHHHHHHHH
Q 018812 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLE-WCQ-RS-----SQCPMCWQPISLKDATSQELLEAVEQ 95 (350)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~-Wl~-~s-----~sCPvCR~~l~~kd~~~~~ll~~ve~ 95 (350)
.|+|+.--+ .-+.+-..|+|. +|+.. |+. .+ -.||+|.+.+...++....++..+..
T Consensus 308 ~CPl~~~Rm--~~P~r~~~CkHl---QcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~ 371 (636)
T KOG2169|consen 308 NCPLSKMRM--SLPARGHTCKHL---QCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQ 371 (636)
T ss_pred cCCccccee--ecCCcccccccc---eecchhhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHh
Confidence 577766554 223333445553 56543 332 11 25999999999888887666555543
No 132
>PLN02189 cellulose synthase
Probab=51.29 E-value=13 Score=42.35 Aligned_cols=53 Identities=17% Similarity=0.393 Sum_probs=35.4
Q ss_pred CCCCccccccccccccCC--CCe--eeecCCccccHHHHHH-HHhcCCCCCCCCcCCC
Q 018812 28 QDSCDDACSICLEEFSES--DPS--TVTSCKHEFHLQCVLE-WCQRSSQCPMCWQPIS 80 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~~--~~~--~vl~CgH~FC~~CI~~-Wl~~s~sCPvCR~~l~ 80 (350)
+......|.||-+.+... ..+ ..-.|+--.|..|.+- ....++.||-|+..+.
T Consensus 30 ~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 30 RNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 333456899999997422 122 3346888899999832 2234678999988765
No 133
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=51.21 E-value=3.2 Score=40.27 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=22.5
Q ss_pred CCccccccccccccCCCCeeee-----cCCccccHHHHHHHHhcCCCCCCCCcC
Q 018812 30 SCDDACSICLEEFSESDPSTVT-----SCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl-----~CgH~FC~~CI~~Wl~~s~sCPvCR~~ 78 (350)
+....||||-....- ..+. --.|.+|..|-.+|......||.|-..
T Consensus 170 w~~g~CPvCGs~P~~---s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVL---SVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp TT-SS-TTT---EEE---EEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred ccCCcCCCCCCcCce---EEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 345799999776421 1111 125789999999998888899999543
No 134
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=49.48 E-value=15 Score=36.88 Aligned_cols=50 Identities=22% Similarity=0.564 Sum_probs=33.7
Q ss_pred cccccccccccc--------------CCCCe--eeecCCccccHHHHHHHHhc---------CCCCCCCCcCCCC
Q 018812 32 DDACSICLEEFS--------------ESDPS--TVTSCKHEFHLQCVLEWCQR---------SSQCPMCWQPISL 81 (350)
Q Consensus 32 d~~C~ICle~f~--------------~~~~~--~vl~CgH~FC~~CI~~Wl~~---------s~sCPvCR~~l~~ 81 (350)
+..||+|+..-. +..++ ...||||.--.+-..-|.+- +..||.|-..+..
T Consensus 341 ~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 341 ERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 678999987521 11122 23599998777788888753 3469999777654
No 135
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=48.21 E-value=2 Score=33.72 Aligned_cols=41 Identities=24% Similarity=0.622 Sum_probs=22.3
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~ 80 (350)
+..||+|...+.. .. +|.+|..|-.. +.....||-|.+++.
T Consensus 1 e~~CP~C~~~L~~------~~-~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW------QG-GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE------ET-TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CCcCCCCCCccEE------eC-CEEECcccccc-ceecccCCCcccHHH
Confidence 4589999988732 12 78888888654 233467999988774
No 136
>PLN02436 cellulose synthase A
Probab=47.15 E-value=17 Score=41.72 Aligned_cols=53 Identities=23% Similarity=0.604 Sum_probs=35.9
Q ss_pred CCCCCccccccccccccCC---CC-eeeecCCccccHHHHHHHH--hcCCCCCCCCcCCC
Q 018812 27 IQDSCDDACSICLEEFSES---DP-STVTSCKHEFHLQCVLEWC--QRSSQCPMCWQPIS 80 (350)
Q Consensus 27 ~qd~~d~~C~ICle~f~~~---~~-~~vl~CgH~FC~~CI~~Wl--~~s~sCPvCR~~l~ 80 (350)
.+.-....|.||-|.+... ++ +..-.|+--.|..|. ++- ..++.||-|+..+.
T Consensus 31 ~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 31 VQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccCCccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhcCCccCcccCCchh
Confidence 3444456899999997422 22 233468888999998 333 33678999988765
No 137
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=46.42 E-value=13 Score=34.38 Aligned_cols=39 Identities=28% Similarity=0.650 Sum_probs=25.8
Q ss_pred ccccccccc--cc---CCCCeeeecCCccccHHHHHHHHhcCCCCCCCC
Q 018812 33 DACSICLEE--FS---ESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCW 76 (350)
Q Consensus 33 ~~C~ICle~--f~---~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR 76 (350)
..|-||-+. +- .........|+-+||..|.. ...||.|.
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~ 196 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCA 196 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcH
Confidence 468888742 11 11223446899999999965 26799993
No 138
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.29 E-value=17 Score=35.32 Aligned_cols=50 Identities=18% Similarity=0.275 Sum_probs=35.4
Q ss_pred cccccccccccCC-CCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCc
Q 018812 33 DACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (350)
Q Consensus 33 ~~C~ICle~f~~~-~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~ 84 (350)
..|+|---.+... .-..+-.|||+|-..-+.+.- ...|++|.+.+...+.
T Consensus 112 fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 112 FICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDDV 162 (293)
T ss_pred eecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccCe
Confidence 3688866555321 123556999999998887744 6789999988876654
No 139
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=45.10 E-value=20 Score=41.14 Aligned_cols=50 Identities=20% Similarity=0.517 Sum_probs=34.4
Q ss_pred CccccccccccccCC---CC-eeeecCCccccHHHHH-HHHhcCCCCCCCCcCCC
Q 018812 31 CDDACSICLEEFSES---DP-STVTSCKHEFHLQCVL-EWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 31 ~d~~C~ICle~f~~~---~~-~~vl~CgH~FC~~CI~-~Wl~~s~sCPvCR~~l~ 80 (350)
....|.||-+.+... ++ +..-.|+--.|..|.+ +..+.++.||-|+..+.
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 345899999987422 21 2345788889999983 22334678999988765
No 140
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.21 E-value=17 Score=39.67 Aligned_cols=43 Identities=33% Similarity=0.678 Sum_probs=32.8
Q ss_pred ccccccccccCCCCeeeecCCc-cccHHHHHHHHh--c----CCCCCCCCcCC
Q 018812 34 ACSICLEEFSESDPSTVTSCKH-EFHLQCVLEWCQ--R----SSQCPMCWQPI 79 (350)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~CgH-~FC~~CI~~Wl~--~----s~sCPvCR~~l 79 (350)
.|+||...+ +-+..-.|+| ..|..|..+... . ...||+|+..+
T Consensus 2 ~c~ic~~s~---~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSP---DFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCc---cccccccccccccchhhhhhhhhhcccccccccCcccccce
Confidence 699998876 3356679999 999999987753 2 35689998744
No 142
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=42.07 E-value=8.5 Score=39.46 Aligned_cols=50 Identities=24% Similarity=0.612 Sum_probs=0.0
Q ss_pred cccccccccccc--------------CCCCe--eeecCCccccHHHHHHHHhc---------CCCCCCCCcCCCC
Q 018812 32 DDACSICLEEFS--------------ESDPS--TVTSCKHEFHLQCVLEWCQR---------SSQCPMCWQPISL 81 (350)
Q Consensus 32 d~~C~ICle~f~--------------~~~~~--~vl~CgH~FC~~CI~~Wl~~---------s~sCPvCR~~l~~ 81 (350)
+.+|++|+..-. +..++ .-.||||..-.+...-|.+- +..||.|-..|..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 679999996421 11222 22599998888888889753 2469999887764
No 143
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.46 E-value=4.5 Score=38.99 Aligned_cols=48 Identities=25% Similarity=0.493 Sum_probs=36.5
Q ss_pred CccccccccccccCC---CCeeeec--------CCccccHHHHHHHHhcC-CCCCCCCcC
Q 018812 31 CDDACSICLEEFSES---DPSTVTS--------CKHEFHLQCVLEWCQRS-SQCPMCWQP 78 (350)
Q Consensus 31 ~d~~C~ICle~f~~~---~~~~vl~--------CgH~FC~~CI~~Wl~~s-~sCPvCR~~ 78 (350)
.+..|.||...|... ..+.++. |+|..|..|+..-+... ..||.|+..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 456799999998621 2345556 99999999999887654 589999764
No 144
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=41.24 E-value=8.9 Score=39.32 Aligned_cols=47 Identities=28% Similarity=0.603 Sum_probs=0.0
Q ss_pred cccccccccccc-----------CCCCeeeecCCccccHHHHHHHHhc------CCCCCCCCcCCCC
Q 018812 32 DDACSICLEEFS-----------ESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPISL 81 (350)
Q Consensus 32 d~~C~ICle~f~-----------~~~~~~vl~CgH~FC~~CI~~Wl~~------s~sCPvCR~~l~~ 81 (350)
-.+||+=|..+. ...|-+.+.|||++.++ .|-.. ...||+|+..-..
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g~~ 340 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVGPY 340 (416)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccCCc
Confidence 457888766552 22334568999987754 56532 4579999876443
No 145
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=41.05 E-value=20 Score=34.94 Aligned_cols=48 Identities=31% Similarity=0.562 Sum_probs=33.1
Q ss_pred cccccccccccCCCCeee----ecCCccccHHHHHHHHh-c--------CCCCCCCCcCCC
Q 018812 33 DACSICLEEFSESDPSTV----TSCKHEFHLQCVLEWCQ-R--------SSQCPMCWQPIS 80 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~v----l~CgH~FC~~CI~~Wl~-~--------s~sCPvCR~~l~ 80 (350)
..|-||...+...+...+ ..|.-.+|..|+-..+. . ...||.|++.+.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 589999998843333322 35888899999988432 2 246999988554
No 146
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=40.48 E-value=12 Score=38.57 Aligned_cols=31 Identities=19% Similarity=0.596 Sum_probs=23.4
Q ss_pred ccccccccccCCCCeeeecCCccccHHHHHHH
Q 018812 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEW 65 (350)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~W 65 (350)
.|+||+-++... .-.+..|.-..|..|+.++
T Consensus 76 ecpicflyyps~-~n~~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 76 ECPICFLYYPSA-KNLVRCCSETICGECFAPF 106 (482)
T ss_pred cCceeeeecccc-cchhhhhccchhhhheecc
Confidence 799999988431 1233478999999999876
No 147
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.72 E-value=8.7 Score=33.98 Aligned_cols=27 Identities=33% Similarity=0.977 Sum_probs=17.2
Q ss_pred cccccccccc-ccCCCCeeeecCCccccHHHHHHHH
Q 018812 32 DDACSICLEE-FSESDPSTVTSCKHEFHLQCVLEWC 66 (350)
Q Consensus 32 d~~C~ICle~-f~~~~~~~vl~CgH~FC~~CI~~Wl 66 (350)
|.+|.||+.. |.+ -|||. |..|-.+..
T Consensus 65 datC~IC~KTKFAD-------G~GH~-C~YCq~r~C 92 (169)
T KOG3799|consen 65 DATCGICHKTKFAD-------GCGHN-CSYCQTRFC 92 (169)
T ss_pred Ccchhhhhhccccc-------ccCcc-cchhhhhHH
Confidence 7899999986 423 57773 445554443
No 148
>PLN02400 cellulose synthase
Probab=39.50 E-value=20 Score=41.14 Aligned_cols=54 Identities=19% Similarity=0.442 Sum_probs=36.0
Q ss_pred CCCCCccccccccccccCC---CC-eeeecCCccccHHHHH-HHHhcCCCCCCCCcCCC
Q 018812 27 IQDSCDDACSICLEEFSES---DP-STVTSCKHEFHLQCVL-EWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 27 ~qd~~d~~C~ICle~f~~~---~~-~~vl~CgH~FC~~CI~-~Wl~~s~sCPvCR~~l~ 80 (350)
.+.-....|.||-|.+... ++ +..-.|+--.|..|.+ +..+.++.||-|+..+.
T Consensus 31 ~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 31 LKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred ccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 3444456899999987422 21 2345788889999982 22234678999987765
No 149
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=38.92 E-value=8.7 Score=42.72 Aligned_cols=48 Identities=19% Similarity=0.553 Sum_probs=33.1
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhc------CCCCCCCCcCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPIS 80 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~------s~sCPvCR~~l~ 80 (350)
...|..|...+.. -.-+...|++.||..|+..|.-+ -..|++||....
T Consensus 229 ~~mC~~C~~tlfn-~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~ 282 (889)
T KOG1356|consen 229 REMCDRCETTLFN-IHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCN 282 (889)
T ss_pred chhhhhhcccccc-eeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcC
Confidence 4489999887632 12355789999999999999511 235777766543
No 150
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=37.96 E-value=28 Score=33.56 Aligned_cols=68 Identities=24% Similarity=0.359 Sum_probs=43.5
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHhcC--CCCCC--CCcCCCCCCcchHHHHHHHHHHhhhc
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPM--CWQPISLKDATSQELLEAVEQERSIR 100 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s--~sCPv--CR~~l~~kd~~~~~ll~~ve~er~~r 100 (350)
-+.+|+|-+..+ .-+..-..|.|.|-.+-|...++.. ..||. |.+.+...++.-..+++.-+....+|
T Consensus 188 ~~nrCpitl~p~--~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~ir 259 (275)
T COG5627 188 LSNRCPITLNPD--FYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILEKREAMKYIR 259 (275)
T ss_pred hcccCCcccCcc--hhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHHHHHHHHHHH
Confidence 467999966665 2334457999999999999999854 45764 55555545554445555444444443
No 151
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=37.68 E-value=29 Score=22.14 Aligned_cols=38 Identities=18% Similarity=0.541 Sum_probs=24.0
Q ss_pred ccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~ 80 (350)
.|..|-+.+... ...+..=+..||..| ..|..|...|.
T Consensus 1 ~C~~C~~~i~~~-~~~~~~~~~~~H~~C--------f~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGG-ELVLRALGKVWHPEC--------FKCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCC-cEEEEeCCccccccC--------CCCcccCCcCc
Confidence 377888877442 123334467788877 47888877653
No 152
>KOG3337 consensus Protein similar to predicted member of the intramitochondrial sorting protein family [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.17 E-value=14 Score=34.07 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=18.1
Q ss_pred cch-hhhhhhcccccccchhhhh
Q 018812 244 FSF-NNRYKESISKSTRGWKERL 265 (350)
Q Consensus 244 ~s~-s~~yk~s~~k~~~g~ke~~ 265 (350)
|-| -+||||+|+|+++|+-+.|
T Consensus 141 qe~sl~rFkenv~ktrkGl~yvl 163 (201)
T KOG3337|consen 141 QEFSLARFKENVTKTRKGLEYVL 163 (201)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Confidence 444 6999999999999997543
No 153
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=33.10 E-value=9.5 Score=37.82 Aligned_cols=46 Identities=20% Similarity=0.311 Sum_probs=30.4
Q ss_pred ccccccccccccCCCCeee----ecCCccccHHHHHHHHhcCCCCCCCCcC
Q 018812 32 DDACSICLEEFSESDPSTV----TSCKHEFHLQCVLEWCQRSSQCPMCWQP 78 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~v----l~CgH~FC~~CI~~Wl~~s~sCPvCR~~ 78 (350)
...||||-..-.... +.. -.=.+.+|..|-.+|-.....||.|-..
T Consensus 184 ~~~CPvCGs~P~~s~-~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASM-VRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhh-hcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 348999987642100 000 0123667888999999888999999653
No 154
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=32.98 E-value=17 Score=27.31 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=16.9
Q ss_pred CCccccccccccccCCCC-eeeecCCccccHHHHHH
Q 018812 30 SCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLE 64 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~-~~vl~CgH~FC~~CI~~ 64 (350)
.+-..|.+|...|..... -.--.||+.||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~ 42 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQ 42 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-E
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCC
Confidence 345689999999943221 23357999999888643
No 155
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=31.48 E-value=16 Score=25.59 Aligned_cols=32 Identities=25% Similarity=0.505 Sum_probs=20.2
Q ss_pred ccccccccccCCCCeeeecCCccccHHHHHHH
Q 018812 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEW 65 (350)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~W 65 (350)
.|.||......++-+.--.|...||..|+..-
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~ 32 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPP 32 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSS
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCC
Confidence 48888884322222233478899999997543
No 156
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=30.95 E-value=93 Score=23.50 Aligned_cols=47 Identities=19% Similarity=0.532 Sum_probs=31.7
Q ss_pred cccccccccccCCCCeeeecCC--ccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 33 DACSICLEEFSESDPSTVTSCK--HEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~Cg--H~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
..|-.|-..|...... ..-|. ..||..|....+ ...||.|-..|...
T Consensus 6 pnCE~C~~dLp~~s~~-A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPE-AYICSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CCccccCCCCCCCCCc-ceEEeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 3577777777543311 22354 479999998877 57999998776543
No 157
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=30.30 E-value=46 Score=38.24 Aligned_cols=49 Identities=20% Similarity=0.519 Sum_probs=34.4
Q ss_pred CccccccccccccCC---CC-eeeecCCccccHHHHHHHH--hcCCCCCCCCcCCC
Q 018812 31 CDDACSICLEEFSES---DP-STVTSCKHEFHLQCVLEWC--QRSSQCPMCWQPIS 80 (350)
Q Consensus 31 ~d~~C~ICle~f~~~---~~-~~vl~CgH~FC~~CI~~Wl--~~s~sCPvCR~~l~ 80 (350)
....|.||-+.+... ++ +..-.|+--.|..|. ++- +.++.||-|+..+.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchh-hhhhhcCCccCCccCCchh
Confidence 456899999987432 21 234578888999998 333 34678999988765
No 158
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=29.41 E-value=32 Score=29.02 Aligned_cols=48 Identities=19% Similarity=0.478 Sum_probs=28.1
Q ss_pred CCCccccccccccccCC--CCeeeecCCccccHHHHHHHHhcCC--CCCCCCc
Q 018812 29 DSCDDACSICLEEFSES--DPSTVTSCKHEFHLQCVLEWCQRSS--QCPMCWQ 77 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~--~~~~vl~CgH~FC~~CI~~Wl~~s~--sCPvCR~ 77 (350)
...+..|.+|...|.-- .......|+|.+|..|-.. ..... .|-+|.+
T Consensus 51 ~~~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~-~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 51 KYGERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY-SKKEPIWLCKVCQK 102 (118)
T ss_dssp THCCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE-TSSSCCEEEHHHHH
T ss_pred ccCCcchhhhCCcccccCCCCCcCCcCCccccCccCCc-CCCCCCEEChhhHH
Confidence 33567999999876321 2345578999999988543 11111 4777743
No 159
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=29.27 E-value=17 Score=36.22 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=31.1
Q ss_pred CccccccccccccCCCCeee----ecCCccccHHHHHHHHhcCCCCCCCCc
Q 018812 31 CDDACSICLEEFSESDPSTV----TSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~v----l~CgH~FC~~CI~~Wl~~s~sCPvCR~ 77 (350)
....||||-....-. +.. -.=.|.+|..|-.+|-.....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s--~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSS--VVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhh--eeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 357899998764211 010 112467888899999988899999965
No 160
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.24 E-value=86 Score=24.96 Aligned_cols=51 Identities=14% Similarity=0.410 Sum_probs=31.5
Q ss_pred ccccccccccCCC-CeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcch
Q 018812 34 ACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATS 86 (350)
Q Consensus 34 ~C~ICle~f~~~~-~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~ 86 (350)
.|--|-.++.... ...+-.=.|.||..|....+ +..||.|-..+.-....+
T Consensus 7 nCECCDrDLpp~s~dA~ICtfEcTFCadCae~~l--~g~CPnCGGelv~RP~RP 58 (84)
T COG3813 7 NCECCDRDLPPDSTDARICTFECTFCADCAENRL--HGLCPNCGGELVARPIRP 58 (84)
T ss_pred CCcccCCCCCCCCCceeEEEEeeehhHhHHHHhh--cCcCCCCCchhhcCcCCh
Confidence 4555655554321 22222224889999987644 579999988877655444
No 161
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=29.09 E-value=29 Score=25.09 Aligned_cols=37 Identities=30% Similarity=0.570 Sum_probs=21.5
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhc--CCCCCCCCcC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--SSQCPMCWQP 78 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~--s~sCPvCR~~ 78 (350)
...||.|.+.|.. . .+...|....... ...||+|...
T Consensus 2 ~f~CP~C~~~~~~---~-------~L~~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSE---S-------SLVEHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCH---H-------HHHHHHHhHCcCCCCCccCCCchhh
Confidence 5689999986521 1 1233444444332 3579999653
No 162
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=28.93 E-value=39 Score=23.92 Aligned_cols=40 Identities=20% Similarity=0.522 Sum_probs=25.5
Q ss_pred cccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCC
Q 018812 35 CSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (350)
Q Consensus 35 C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd 83 (350)
|..|...+.. ....+..-+..||..| ..|-.|...|....
T Consensus 1 C~~C~~~I~~-~~~~~~~~~~~~H~~C--------f~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYG-TEIVIKAMGKFWHPEC--------FKCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESS-SSEEEEETTEEEETTT--------SBETTTTCBTTTSS
T ss_pred CCCCCCCccC-cEEEEEeCCcEEEccc--------cccCCCCCccCCCe
Confidence 5667777643 2233335677788777 57888887776543
No 163
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.64 E-value=16 Score=37.73 Aligned_cols=36 Identities=28% Similarity=0.597 Sum_probs=25.3
Q ss_pred cccccccccccCCC-Ce--ee--ecCCccccHHHHHHHHhc
Q 018812 33 DACSICLEEFSESD-PS--TV--TSCKHEFHLQCVLEWCQR 68 (350)
Q Consensus 33 ~~C~ICle~f~~~~-~~--~v--l~CgH~FC~~CI~~Wl~~ 68 (350)
-.||.|...+.... .. .. ..|.|.||+.|+..|...
T Consensus 227 k~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 227 KECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred ccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 34999998875332 11 11 249999999998888765
No 164
>PF09397 Ftsk_gamma: Ftsk gamma domain; InterPro: IPR018541 This domain directs oriented DNA translocation and forms a winged helix structure []. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding []. ; PDB: 2VE9_B 2VE8_E 2J5O_A 2J5P_A.
Probab=27.27 E-value=27 Score=26.83 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=19.1
Q ss_pred cccccc-ccchhHHHHHHHHhcCCC
Q 018812 277 SENRSE-NVGITSVSRLMEQLGTGE 300 (350)
Q Consensus 277 ~~~~re-~agia~v~rm~e~l~~~~ 300 (350)
+-+||. .-|-.-.+|+||+||..+
T Consensus 24 S~lQR~~rIGynrAariid~LE~~G 48 (65)
T PF09397_consen 24 SLLQRKFRIGYNRAARIIDQLEEEG 48 (65)
T ss_dssp HHHHHHHT--HHHHHHHHHHHHHCT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 457999 999999999999999655
No 165
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=26.59 E-value=49 Score=31.53 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=21.3
Q ss_pred ccHHHHHHHHhcCCCCCCCCcCCCCCCc
Q 018812 57 FHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (350)
Q Consensus 57 FC~~CI~~Wl~~s~sCPvCR~~l~~kd~ 84 (350)
-|..|....-..-..||+|+..-..+++
T Consensus 196 ~C~sC~qqIHRNAPiCPlCK~KsRSrnp 223 (230)
T PF10146_consen 196 TCQSCHQQIHRNAPICPLCKAKSRSRNP 223 (230)
T ss_pred hhHhHHHHHhcCCCCCcccccccccCCC
Confidence 4788887777778899999887655443
No 166
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PLN02195 cellulose synthase A
Probab=26.23 E-value=65 Score=36.83 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=34.8
Q ss_pred ccccccccccccCC---CC-eeeecCCccccHHHHHHHH--hcCCCCCCCCcCCCC
Q 018812 32 DDACSICLEEFSES---DP-STVTSCKHEFHLQCVLEWC--QRSSQCPMCWQPISL 81 (350)
Q Consensus 32 d~~C~ICle~f~~~---~~-~~vl~CgH~FC~~CI~~Wl--~~s~sCPvCR~~l~~ 81 (350)
...|.||-+.+... ++ +..-.|+--.|..|. ++- +.++.||-|+.....
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~eg~q~CpqCkt~Yk~ 60 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKEGRKVCLRCGGPYDA 60 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhcCCccCCccCCcccc
Confidence 35899999977432 21 244578888999998 443 236789999988873
No 168
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=25.22 E-value=44 Score=26.05 Aligned_cols=12 Identities=25% Similarity=0.861 Sum_probs=8.8
Q ss_pred cccHHHHHHHHh
Q 018812 56 EFHLQCVLEWCQ 67 (350)
Q Consensus 56 ~FC~~CI~~Wl~ 67 (350)
-||.-|+..|+.
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999985
No 169
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=24.19 E-value=52 Score=33.08 Aligned_cols=44 Identities=27% Similarity=0.653 Sum_probs=27.7
Q ss_pred cccccccccccc-----------CCCCeeeecCCccccHHHHHHHHhc------CCCCCCCCcC
Q 018812 32 DDACSICLEEFS-----------ESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQP 78 (350)
Q Consensus 32 d~~C~ICle~f~-----------~~~~~~vl~CgH~FC~~CI~~Wl~~------s~sCPvCR~~ 78 (350)
--.||+=|..+. .++|-+.+.|||+-.. ..|-.+ ...||+|+..
T Consensus 290 RPQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~---H~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 290 RPQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGY---HNWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred CCCCCcccceeecccccccccccccCCeEEEeccccccc---cccccccccCcccCcCCeeeee
Confidence 358998777653 2234466899986432 256432 3579999864
No 170
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=24.04 E-value=64 Score=32.88 Aligned_cols=15 Identities=13% Similarity=0.674 Sum_probs=11.5
Q ss_pred CCCCccccccccccc
Q 018812 28 QDSCDDACSICLEEF 42 (350)
Q Consensus 28 qd~~d~~C~ICle~f 42 (350)
.++.+..||+|-+-+
T Consensus 11 dedl~ElCPVCGDkV 25 (475)
T KOG4218|consen 11 DEDLGELCPVCGDKV 25 (475)
T ss_pred ccccccccccccCcc
Confidence 445577899998876
No 171
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.62 E-value=22 Score=29.01 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=26.6
Q ss_pred CCCCCCCCcccccc--ccchhHHHHHHHHhcCCC
Q 018812 269 NASMPGTGSENRSE--NVGITSVSRLMEQLGTGE 300 (350)
Q Consensus 269 ~~~~~~~~~~~~re--~agia~v~rm~e~l~~~~ 300 (350)
.-|+.||-..++++ +.+.++|+|.++.|...+
T Consensus 16 ~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 16 HLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 35678888888777 899999999999998554
No 172
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.01 E-value=44 Score=36.63 Aligned_cols=39 Identities=23% Similarity=0.513 Sum_probs=26.6
Q ss_pred cccccccccc-CCCCeeeecCCccccHHHHHHHHhcCCCCCCC
Q 018812 34 ACSICLEEFS-ESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (350)
Q Consensus 34 ~C~ICle~f~-~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvC 75 (350)
+|-+|...=. ..+-...+.|+-.||..| |+.-...||+|
T Consensus 656 ~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~~~~~~vC 695 (717)
T KOG3726|consen 656 TCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDYASISEVC 695 (717)
T ss_pred HHHHhcCCcCccccccCccccCCcchHhh---hhhhhccCccc
Confidence 6888876532 112235568999999998 55556779999
No 173
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=22.91 E-value=20 Score=25.91 Aligned_cols=34 Identities=18% Similarity=0.518 Sum_probs=21.3
Q ss_pred cccc--cccccccCC----CCeee-ecCCccccHHHHHHHH
Q 018812 33 DACS--ICLEEFSES----DPSTV-TSCKHEFHLQCVLEWC 66 (350)
Q Consensus 33 ~~C~--ICle~f~~~----~~~~v-l~CgH~FC~~CI~~Wl 66 (350)
.-|| -|...+... ...+. ..|+|.||+.|...|-
T Consensus 19 ~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H 59 (64)
T smart00647 19 KWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWH 59 (64)
T ss_pred cCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcCC
Confidence 3577 675544322 22222 3689999999988874
No 174
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=22.65 E-value=27 Score=27.41 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=25.2
Q ss_pred ccCCCCCccccccccccccCCCCe--eeecCCccccHHHHHH
Q 018812 25 GGIQDSCDDACSICLEEFSESDPS--TVTSCKHEFHLQCVLE 64 (350)
Q Consensus 25 g~~qd~~d~~C~ICle~f~~~~~~--~vl~CgH~FC~~CI~~ 64 (350)
..+.......|.+|.... +..+ ....|.-.||..|...
T Consensus 29 ~~~~~~~~~~C~~C~~~~--Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 29 KEIKRRRKLKCSICKKKG--GACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred HHHHHHhCCCCcCCCCCC--CeEEEEeCCCCCcEEChHHHcc
Confidence 333444567999999774 2222 2347889999999754
No 175
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=22.63 E-value=60 Score=31.22 Aligned_cols=28 Identities=18% Similarity=0.501 Sum_probs=21.0
Q ss_pred cccHHHHHHHHhcCCCCCCCCcCCCCCC
Q 018812 56 EFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (350)
Q Consensus 56 ~FC~~CI~~Wl~~s~sCPvCR~~l~~kd 83 (350)
..|..|-...-..-..||+|+.....++
T Consensus 250 K~ClsChqqIHRNAPiCPlCKaKsRSrN 277 (286)
T KOG4451|consen 250 KVCLSCHQQIHRNAPICPLCKAKSRSRN 277 (286)
T ss_pred hHHHHHHHHHhcCCCCCcchhhccccCC
Confidence 3577888777777889999987665444
No 176
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=22.62 E-value=42 Score=25.76 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.2
Q ss_pred cccccc-ccchhHHHHHHHHhcCCC
Q 018812 277 SENRSE-NVGITSVSRLMEQLGTGE 300 (350)
Q Consensus 277 ~~~~re-~agia~v~rm~e~l~~~~ 300 (350)
|-+||. .-|..--+|+||+||..+
T Consensus 23 S~lQR~~~IGynrAariid~lE~~G 47 (63)
T smart00843 23 SLLQRRLRIGYNRAARLIDQLEEEG 47 (63)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHCc
Confidence 457999 999999999999999655
No 177
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=22.21 E-value=1.1e+02 Score=25.49 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=19.0
Q ss_pred CccccHHHHHHHHhc---------CCCCCCCCcC
Q 018812 54 KHEFHLQCVLEWCQR---------SSQCPMCWQP 78 (350)
Q Consensus 54 gH~FC~~CI~~Wl~~---------s~sCPvCR~~ 78 (350)
.-.||..||..++.. .-.||.||..
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 667999999888743 2359999873
No 178
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=22.13 E-value=50 Score=32.10 Aligned_cols=46 Identities=13% Similarity=0.300 Sum_probs=33.4
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHhcC--CCCCCCCcC
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQP 78 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s--~sCPvCR~~ 78 (350)
.+..|||=+..+ ..|++-..|+|+|=.+-|...+... -.||+--..
T Consensus 175 fs~rdPis~~~I--~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 175 FSNRDPISKKPI--VNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred hcccCchhhhhh--hchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 356899865555 3556667999999999999988663 357775443
No 179
>COG4847 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.91 E-value=65 Score=26.86 Aligned_cols=35 Identities=26% Similarity=0.409 Sum_probs=27.6
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHh
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ 67 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~ 67 (350)
+-.|.||-..+..++.-+-++ .-..|+.|+..-..
T Consensus 6 ewkC~VCg~~iieGqkFTF~~-kGsVH~eCl~~s~~ 40 (103)
T COG4847 6 EWKCYVCGGTIIEGQKFTFTK-KGSVHYECLAESKR 40 (103)
T ss_pred eeeEeeeCCEeeeccEEEEee-CCcchHHHHHHHHh
Confidence 358999999998877777777 66789999877543
No 180
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=21.24 E-value=71 Score=26.03 Aligned_cols=33 Identities=24% Similarity=0.465 Sum_probs=22.7
Q ss_pred CCccccccccccccCCCCeeee--cCCccccHHHHHH
Q 018812 30 SCDDACSICLEEFSESDPSTVT--SCKHEFHLQCVLE 64 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl--~CgH~FC~~CI~~ 64 (350)
.....|.||.... +-.+.-. .|...||..|...
T Consensus 53 ~~~~~C~iC~~~~--G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 53 RFKLKCSICGKSG--GACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred hcCCcCcCCCCCC--ceeEEcCCCCCCcCCCHHHHHH
Confidence 3567999999874 2222222 4788999999755
No 181
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=20.42 E-value=70 Score=22.78 Aligned_cols=34 Identities=18% Similarity=0.405 Sum_probs=23.4
Q ss_pred cccccccccccCCC-CeeeecCCccccHHHHHHHH
Q 018812 33 DACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWC 66 (350)
Q Consensus 33 ~~C~ICle~f~~~~-~~~vl~CgH~FC~~CI~~Wl 66 (350)
..|.+|-..|.... ......||+.||..|.....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~ 37 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRI 37 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCee
Confidence 47899988774321 22345899999999976543
No 182
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=20.40 E-value=85 Score=30.80 Aligned_cols=40 Identities=28% Similarity=0.546 Sum_probs=23.3
Q ss_pred ccccccccccCCCCee-eecCC-ccccHHHHHHHH-hcCCCCC
Q 018812 34 ACSICLEEFSESDPST-VTSCK-HEFHLQCVLEWC-QRSSQCP 73 (350)
Q Consensus 34 ~C~ICle~f~~~~~~~-vl~Cg-H~FC~~CI~~Wl-~~s~sCP 73 (350)
.|.||++.-..+.+-. ++-=. -.=|.+|+..|- .-+..||
T Consensus 32 fChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 32 FCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIANQDCP 74 (285)
T ss_pred ecceeeccccccCccccccccccccchHHHHHHHHHHHcCCCC
Confidence 5788887764433322 11111 134689999995 4567788
No 183
>PLN02248 cellulose synthase-like protein
Probab=20.05 E-value=78 Score=36.73 Aligned_cols=31 Identities=19% Similarity=0.611 Sum_probs=27.0
Q ss_pred cCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 52 SCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 52 ~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
.|++..|.+|...-+.....||-|+.+....
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKSGGICPGCKEPYKVT 179 (1135)
T ss_pred cccchhHHhHhhhhhhcCCCCCCCccccccc
Confidence 6788999999999998889999999887543
Done!