Query 018812
Match_columns 350
No_of_seqs 240 out of 1544
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 06:26:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kiz_A E3 ubiquitin-protein li 99.4 3.3E-13 1.1E-17 101.2 6.0 54 29-82 11-64 (69)
2 2l0b_A E3 ubiquitin-protein li 99.4 2.4E-13 8.3E-18 108.2 5.2 52 30-81 38-89 (91)
3 2ep4_A Ring finger protein 24; 99.4 4.5E-13 1.5E-17 101.8 5.9 54 29-82 12-65 (74)
4 2ect_A Ring finger protein 126 99.4 2.5E-13 8.5E-18 104.3 4.3 55 30-84 13-67 (78)
5 1iym_A EL5; ring-H2 finger, ub 99.4 3.2E-13 1.1E-17 96.8 3.6 50 31-80 4-54 (55)
6 1x4j_A Ring finger protein 38; 99.3 3.8E-13 1.3E-17 102.7 3.9 52 30-81 21-72 (75)
7 1t1h_A Gspef-atpub14, armadill 99.3 9.1E-13 3.1E-17 101.1 5.0 60 30-92 6-66 (78)
8 2djb_A Polycomb group ring fin 99.3 9.8E-13 3.4E-17 99.8 5.0 52 31-84 14-65 (72)
9 3ng2_A RNF4, snurf, ring finge 99.3 8.7E-13 3E-17 99.0 4.0 57 28-84 6-66 (71)
10 3lrq_A E3 ubiquitin-protein li 99.3 6.5E-13 2.2E-17 107.5 2.8 60 32-93 22-82 (100)
11 2ecm_A Ring finger and CHY zin 99.3 1.8E-12 6E-17 92.8 4.6 50 31-80 4-54 (55)
12 2ecl_A Ring-box protein 2; RNF 99.3 1.6E-12 5.5E-17 101.5 4.4 54 29-82 12-77 (81)
13 2ea6_A Ring finger protein 4; 99.3 1.9E-12 6.4E-17 96.3 4.2 52 30-81 13-68 (69)
14 2csy_A Zinc finger protein 183 99.3 4.8E-12 1.6E-16 98.0 6.4 48 30-80 13-60 (81)
15 2y43_A E3 ubiquitin-protein li 99.3 1.7E-12 5.9E-17 104.1 4.0 60 32-93 22-81 (99)
16 1v87_A Deltex protein 2; ring- 99.3 3.9E-12 1.3E-16 104.3 6.1 54 29-82 22-95 (114)
17 2d8t_A Dactylidin, ring finger 99.3 2.8E-12 9.5E-17 97.0 4.1 51 29-82 12-62 (71)
18 2xeu_A Ring finger protein 4; 99.2 2.9E-12 9.9E-17 93.9 3.8 54 31-84 2-59 (64)
19 1chc_A Equine herpes virus-1 r 99.2 3.4E-12 1.2E-16 95.2 3.9 49 31-81 4-52 (68)
20 4ayc_A E3 ubiquitin-protein li 99.2 2.6E-12 8.8E-17 109.5 3.6 49 32-83 53-101 (138)
21 3ztg_A E3 ubiquitin-protein li 99.2 7.4E-12 2.5E-16 98.9 5.7 60 31-93 12-75 (92)
22 3fl2_A E3 ubiquitin-protein li 99.2 6.7E-12 2.3E-16 104.8 5.5 60 32-94 52-113 (124)
23 2ysl_A Tripartite motif-contai 99.2 6.7E-12 2.3E-16 94.8 5.0 51 30-83 18-71 (73)
24 2ckl_A Polycomb group ring fin 99.2 6.7E-12 2.3E-16 102.3 5.0 50 31-82 14-63 (108)
25 2ct2_A Tripartite motif protei 99.2 8.8E-12 3E-16 97.1 5.5 53 31-83 14-70 (88)
26 3dpl_R Ring-box protein 1; ubi 99.2 6.1E-12 2.1E-16 103.8 4.6 52 30-81 35-101 (106)
27 2ecy_A TNF receptor-associated 99.2 8.1E-12 2.8E-16 93.0 4.5 50 31-83 14-64 (66)
28 2yur_A Retinoblastoma-binding 99.2 8.5E-12 2.9E-16 95.3 4.7 50 31-83 14-66 (74)
29 2kr4_A Ubiquitin conjugation f 99.2 1.4E-11 4.8E-16 97.2 5.4 60 31-93 13-72 (85)
30 2ecw_A Tripartite motif-contai 99.2 1E-11 3.5E-16 95.6 4.5 51 31-84 18-74 (85)
31 1wgm_A Ubiquitin conjugation f 99.2 3.4E-11 1.2E-15 97.7 6.8 63 31-96 21-84 (98)
32 2kre_A Ubiquitin conjugation f 99.2 2.9E-11 9.9E-16 98.5 6.4 62 31-95 28-89 (100)
33 1z6u_A NP95-like ring finger p 99.2 2.5E-11 8.5E-16 105.5 6.3 62 31-95 77-140 (150)
34 2ecv_A Tripartite motif-contai 99.2 1.3E-11 4.6E-16 94.9 4.0 51 31-84 18-74 (85)
35 2egp_A Tripartite motif-contai 99.2 4.6E-12 1.6E-16 96.9 1.3 51 31-84 11-68 (79)
36 2ecn_A Ring finger protein 141 99.2 5.3E-12 1.8E-16 94.9 1.3 50 30-83 13-62 (70)
37 2ckl_B Ubiquitin ligase protei 99.1 1.9E-11 6.5E-16 106.8 3.8 60 32-93 54-115 (165)
38 2ysj_A Tripartite motif-contai 99.1 4.3E-11 1.5E-15 88.1 4.6 43 30-75 18-63 (63)
39 3hct_A TNF receptor-associated 99.1 4.3E-11 1.5E-15 99.2 4.0 62 31-95 17-79 (118)
40 1jm7_A BRCA1, breast cancer ty 99.1 1.8E-11 6.3E-16 99.5 1.7 50 32-84 21-73 (112)
41 1g25_A CDK-activating kinase a 99.1 5.1E-11 1.7E-15 88.4 3.9 54 31-84 2-58 (65)
42 4a0k_B E3 ubiquitin-protein li 99.1 1.2E-11 4.2E-16 103.8 0.4 53 29-81 45-112 (117)
43 1jm7_B BARD1, BRCA1-associated 99.1 3.1E-11 1.1E-15 100.0 2.7 57 32-93 22-79 (117)
44 4ap4_A E3 ubiquitin ligase RNF 99.1 5.7E-11 1.9E-15 98.5 3.8 54 31-84 6-63 (133)
45 3l11_A E3 ubiquitin-protein li 99.0 2.8E-11 9.5E-16 99.6 1.0 49 30-81 13-62 (115)
46 2c2l_A CHIP, carboxy terminus 99.0 1.3E-10 4.5E-15 107.5 5.5 64 29-95 205-269 (281)
47 2ecj_A Tripartite motif-contai 99.0 9.5E-11 3.3E-15 84.4 3.4 42 31-75 14-58 (58)
48 2yu4_A E3 SUMO-protein ligase 99.0 2E-10 6.9E-15 92.0 5.3 63 31-96 6-78 (94)
49 2d8s_A Cellular modulator of i 99.0 1.7E-10 6E-15 90.4 3.9 53 29-82 12-71 (80)
50 1rmd_A RAG1; V(D)J recombinati 99.0 1.9E-10 6.4E-15 94.7 3.8 51 32-85 23-74 (116)
51 1e4u_A Transcriptional repress 99.0 4.5E-10 1.6E-14 87.6 4.5 53 30-83 9-64 (78)
52 4ap4_A E3 ubiquitin ligase RNF 98.9 2.8E-10 9.6E-15 94.2 3.4 57 28-84 68-128 (133)
53 2f42_A STIP1 homology and U-bo 98.9 1.3E-09 4.5E-14 97.7 7.1 64 30-96 104-168 (179)
54 1bor_A Transcription factor PM 98.9 3.3E-10 1.1E-14 82.3 1.4 48 29-82 3-50 (56)
55 3knv_A TNF receptor-associated 98.9 4.7E-10 1.6E-14 96.5 1.8 48 31-81 30-78 (141)
56 3hcs_A TNF receptor-associated 98.9 1.1E-09 3.6E-14 96.0 4.0 61 31-94 17-78 (170)
57 2vje_A E3 ubiquitin-protein li 98.9 1.4E-09 4.9E-14 81.2 4.1 49 30-81 6-57 (64)
58 2ct0_A Non-SMC element 1 homol 98.8 2.4E-09 8.1E-14 83.0 5.2 49 32-82 15-65 (74)
59 4ic3_A E3 ubiquitin-protein li 98.8 1.2E-09 4.3E-14 83.6 1.9 43 32-81 24-67 (74)
60 2y1n_A E3 ubiquitin-protein li 98.8 3.1E-09 1.1E-13 105.5 5.1 48 32-82 332-380 (389)
61 2vje_B MDM4 protein; proto-onc 98.8 3E-09 1E-13 79.2 3.8 48 31-81 6-56 (63)
62 3htk_C E3 SUMO-protein ligase 98.8 1.8E-09 6.2E-14 102.0 3.0 61 32-94 181-245 (267)
63 2ecg_A Baculoviral IAP repeat- 98.6 8.5E-09 2.9E-13 78.9 2.0 43 32-81 25-68 (75)
64 2ea5_A Cell growth regulator w 98.5 5.3E-08 1.8E-12 73.7 3.8 46 29-81 12-58 (68)
65 2bay_A PRE-mRNA splicing facto 98.5 4.5E-08 1.5E-12 72.8 3.1 51 32-85 3-54 (61)
66 2yho_A E3 ubiquitin-protein li 98.5 2.5E-08 8.5E-13 77.6 1.5 43 32-81 18-61 (79)
67 1wim_A KIAA0161 protein; ring 98.5 7.3E-08 2.5E-12 76.5 4.0 51 31-81 4-66 (94)
68 3k1l_B Fancl; UBC, ring, RWD, 98.4 6.2E-08 2.1E-12 94.8 1.3 52 30-81 306-373 (381)
69 3t6p_A Baculoviral IAP repeat- 98.3 9E-08 3.1E-12 93.7 1.2 43 32-81 295-338 (345)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.3 6E-07 2E-11 66.5 4.5 50 29-81 3-59 (60)
71 3vk6_A E3 ubiquitin-protein li 98.0 2.6E-06 8.9E-11 69.4 3.6 46 34-81 3-49 (101)
72 3nw0_A Non-structural maintena 97.6 4.5E-05 1.5E-09 70.9 4.4 50 32-83 180-231 (238)
73 2ko5_A Ring finger protein Z; 96.2 0.0017 5.7E-08 52.3 1.8 45 33-82 29-74 (99)
74 2jun_A Midline-1; B-BOX, TRIM, 95.4 0.0071 2.4E-07 47.8 2.6 34 31-66 2-37 (101)
75 3m62_A Ubiquitin conjugation f 90.7 0.29 1E-05 53.5 6.2 60 30-92 889-949 (968)
76 2lri_C Autoimmune regulator; Z 90.5 0.19 6.6E-06 37.5 3.3 53 24-79 4-60 (66)
77 3i2d_A E3 SUMO-protein ligase 87.4 0.43 1.5E-05 47.0 4.2 60 33-94 250-313 (371)
78 4fo9_A E3 SUMO-protein ligase 86.1 0.55 1.9E-05 46.0 4.2 60 33-94 216-279 (360)
79 2cs3_A Protein C14ORF4, MY039 84.2 0.61 2.1E-05 36.5 2.8 36 30-68 13-52 (93)
80 1wil_A KIAA1045 protein; ring 83.2 1.1 3.7E-05 35.3 3.8 36 29-65 12-47 (89)
81 1we9_A PHD finger family prote 80.0 0.21 7.3E-06 36.4 -1.2 49 29-77 3-57 (64)
82 2l5u_A Chromodomain-helicase-D 79.4 0.76 2.6E-05 33.4 1.7 48 27-77 6-57 (61)
83 2k16_A Transcription initiatio 75.7 0.57 2E-05 35.1 0.0 50 30-80 16-70 (75)
84 3o36_A Transcription intermedi 75.5 0.56 1.9E-05 41.0 -0.0 46 31-79 3-52 (184)
85 2ysm_A Myeloid/lymphoid or mix 73.8 0.85 2.9E-05 36.7 0.6 49 28-76 3-55 (111)
86 1weo_A Cellulose synthase, cat 71.5 5.7 0.0002 31.5 4.8 53 28-80 12-69 (93)
87 2lbm_A Transcriptional regulat 71.2 4 0.00014 34.8 4.3 46 29-77 60-116 (142)
88 1fp0_A KAP-1 corepressor; PHD 70.9 1.4 4.8E-05 34.8 1.2 51 26-79 19-73 (88)
89 3u5n_A E3 ubiquitin-protein li 70.2 0.57 2E-05 41.9 -1.3 48 29-79 4-55 (207)
90 1mm2_A MI2-beta; PHD, zinc fin 68.9 0.96 3.3E-05 32.9 -0.1 47 29-78 6-56 (61)
91 1wem_A Death associated transc 68.4 1.1 3.6E-05 33.8 0.0 47 31-78 15-70 (76)
92 1z60_A TFIIH basal transcripti 66.2 1.8 6.3E-05 31.6 0.9 43 33-75 16-58 (59)
93 3lqh_A Histone-lysine N-methyl 66.1 1.4 4.7E-05 39.2 0.3 48 33-80 3-65 (183)
94 1wep_A PHF8; structural genomi 65.8 2.9 9.9E-05 31.7 2.1 50 29-79 9-64 (79)
95 1f62_A Transcription factor WS 64.3 3 0.0001 28.7 1.7 44 34-77 2-49 (51)
96 2lv9_A Histone-lysine N-methyl 63.4 1.6 5.5E-05 34.7 0.2 45 32-77 28-75 (98)
97 1weu_A Inhibitor of growth fam 62.9 3.5 0.00012 32.6 2.1 49 27-79 31-86 (91)
98 2ri7_A Nucleosome-remodeling f 62.9 1.3 4.4E-05 38.2 -0.5 50 27-77 3-58 (174)
99 1wew_A DNA-binding family prot 61.6 1.4 4.9E-05 33.4 -0.4 49 27-78 11-72 (78)
100 2vpb_A Hpygo1, pygopus homolog 58.0 7.1 0.00024 28.7 2.9 34 30-63 6-41 (65)
101 2yql_A PHD finger protein 21A; 57.8 0.68 2.3E-05 32.9 -2.7 45 29-76 6-54 (56)
102 1xwh_A Autoimmune regulator; P 56.3 4 0.00014 29.9 1.3 48 27-77 3-54 (66)
103 1wen_A Inhibitor of growth fam 54.6 5.4 0.00018 29.8 1.8 47 28-79 12-66 (71)
104 2ro1_A Transcription intermedi 51.6 2.8 9.6E-05 37.0 -0.3 44 32-78 2-49 (189)
105 2kgg_A Histone demethylase jar 51.4 4.4 0.00015 28.3 0.8 43 34-76 4-52 (52)
106 2yt5_A Metal-response element- 47.1 6.8 0.00023 28.3 1.2 49 30-78 4-61 (66)
107 3ql9_A Transcriptional regulat 47.1 14 0.00048 30.9 3.4 46 29-77 54-110 (129)
108 3v43_A Histone acetyltransfera 46.7 22 0.00075 28.4 4.4 32 32-63 5-42 (112)
109 2e6r_A Jumonji/ARID domain-con 46.4 1.2 4.1E-05 35.1 -3.2 50 28-77 12-65 (92)
110 1z2q_A LM5-1; membrane protein 44.0 12 0.00041 28.5 2.3 36 29-64 18-54 (84)
111 2xb1_A Pygopus homolog 2, B-ce 43.8 8.4 0.00029 30.9 1.4 46 33-78 4-61 (105)
112 3o70_A PHD finger protein 13; 43.3 2.1 7.1E-05 31.9 -2.1 48 28-77 15-66 (68)
113 2d8v_A Zinc finger FYVE domain 42.8 13 0.00045 27.8 2.2 34 29-66 5-39 (67)
114 1joc_A EEA1, early endosomal a 42.2 11 0.00039 31.0 2.0 32 32-63 69-101 (125)
115 3t7l_A Zinc finger FYVE domain 41.1 13 0.00043 28.9 2.0 34 32-65 20-54 (90)
116 2yw8_A RUN and FYVE domain-con 40.2 13 0.00043 28.3 1.9 36 29-64 16-52 (82)
117 2puy_A PHD finger protein 21A; 40.1 10 0.00036 26.9 1.3 46 29-77 2-51 (60)
118 2ku3_A Bromodomain-containing 39.6 26 0.0009 26.0 3.5 49 28-76 12-64 (71)
119 1x4u_A Zinc finger, FYVE domai 39.4 14 0.00048 28.1 2.0 34 29-62 11-45 (84)
120 2zet_C Melanophilin; complex, 39.2 13 0.00044 32.0 2.0 47 30-77 66-116 (153)
121 3mpx_A FYVE, rhogef and PH dom 39.0 6.4 0.00022 38.1 0.0 48 32-79 375-430 (434)
122 1zbd_B Rabphilin-3A; G protein 38.4 9.4 0.00032 32.1 1.0 34 30-63 53-88 (134)
123 2pv0_B DNA (cytosine-5)-methyl 36.7 31 0.0011 34.0 4.5 48 28-78 89-148 (386)
124 4gne_A Histone-lysine N-methyl 36.0 15 0.0005 29.8 1.7 48 28-81 11-65 (107)
125 1dvp_A HRS, hepatocyte growth 35.2 12 0.00041 33.4 1.2 32 32-63 161-193 (220)
126 1wd2_A Ariadne-1 protein homol 34.9 4.6 0.00016 29.3 -1.3 36 33-68 7-47 (60)
127 2l43_A N-teminal domain from h 34.5 27 0.00091 27.0 3.0 52 29-81 22-78 (88)
128 1vfy_A Phosphatidylinositol-3- 34.4 18 0.0006 26.8 1.8 32 32-63 11-43 (73)
129 1m3v_A FLIN4, fusion of the LI 34.3 23 0.0008 28.3 2.7 51 33-83 33-83 (122)
130 3zyq_A Hepatocyte growth facto 33.6 15 0.0005 33.2 1.5 33 32-64 164-197 (226)
131 3v43_A Histone acetyltransfera 32.8 9.5 0.00032 30.6 0.1 44 34-77 63-111 (112)
132 1y02_A CARP2, FYVE-ring finger 32.7 2.8 9.5E-05 34.8 -3.2 49 29-77 16-65 (120)
133 1wfk_A Zinc finger, FYVE domai 31.5 22 0.00074 27.5 2.0 33 32-64 9-42 (88)
134 2cu8_A Cysteine-rich protein 2 31.1 27 0.00093 25.2 2.4 41 32-82 9-49 (76)
135 3lt7_A Adhesin YADA; adhesion, 31.0 6.2 0.00021 29.3 -1.2 16 277-292 45-60 (64)
136 2e6s_A E3 ubiquitin-protein li 30.5 6.5 0.00022 29.9 -1.2 45 33-77 27-76 (77)
137 1x64_A Alpha-actinin-2 associa 29.7 33 0.0011 25.7 2.7 40 32-82 25-64 (89)
138 2gmg_A Hypothetical protein PF 29.4 13 0.00043 30.3 0.3 30 47-81 67-96 (105)
139 2xjy_A Rhombotin-2; oncoprotei 28.8 42 0.0014 26.7 3.4 49 33-81 30-78 (131)
140 2dar_A PDZ and LIM domain prot 28.6 31 0.0011 25.8 2.4 40 32-82 25-64 (90)
141 3a1b_A DNA (cytosine-5)-methyl 28.5 27 0.00091 30.3 2.2 45 29-77 76-133 (159)
142 2jmo_A Parkin; IBR, E3 ligase, 28.0 4.4 0.00015 30.8 -2.6 19 52-72 55-73 (80)
143 2fiy_A Protein FDHE homolog; F 27.9 6.9 0.00024 37.3 -1.8 46 30-78 180-231 (309)
144 1wev_A Riken cDNA 1110020M19; 26.1 16 0.00056 28.1 0.4 48 31-78 15-72 (88)
145 2co8_A NEDD9 interacting prote 25.7 37 0.0013 25.1 2.3 42 32-83 15-56 (82)
146 2l4z_A DNA endonuclease RBBP8, 25.2 28 0.00097 28.1 1.7 39 32-80 61-99 (123)
147 2kwj_A Zinc finger protein DPF 24.8 28 0.00096 27.9 1.6 33 33-65 2-41 (114)
148 3ask_A E3 ubiquitin-protein li 24.4 12 0.00039 34.4 -0.9 45 33-77 175-224 (226)
149 1wyh_A SLIM 2, skeletal muscle 24.3 49 0.0017 23.3 2.7 42 32-82 5-46 (72)
150 1x62_A C-terminal LIM domain p 24.2 29 0.00099 25.3 1.4 38 32-80 15-52 (79)
151 2xqn_T Testin, TESS; metal-bin 24.0 79 0.0027 24.9 4.2 45 33-81 31-75 (126)
152 2d8x_A Protein pinch; LIM doma 23.9 40 0.0014 23.8 2.1 40 33-83 6-45 (70)
153 2d8z_A Four and A half LIM dom 22.9 53 0.0018 23.0 2.6 38 33-81 6-43 (70)
154 1x4l_A Skeletal muscle LIM-pro 22.9 54 0.0018 23.2 2.7 42 33-82 6-48 (72)
155 3asl_A E3 ubiquitin-protein li 22.6 9.4 0.00032 28.3 -1.6 26 52-77 38-68 (70)
156 2ku7_A MLL1 PHD3-CYP33 RRM chi 22.1 1.7E+02 0.0059 22.7 5.9 27 52-78 7-44 (140)
157 2d8y_A Eplin protein; LIM doma 22.0 81 0.0028 23.5 3.7 41 32-82 15-55 (91)
158 1x4k_A Skeletal muscle LIM-pro 22.0 55 0.0019 23.0 2.6 41 33-82 6-46 (72)
159 1x68_A FHL5 protein; four-and- 21.9 63 0.0022 23.2 2.9 43 32-82 5-48 (76)
160 1v6g_A Actin binding LIM prote 21.7 48 0.0016 24.1 2.2 40 33-83 16-55 (81)
161 2jne_A Hypothetical protein YF 21.1 8.1 0.00028 31.1 -2.3 41 32-80 32-72 (101)
162 2o35_A Hypothetical protein DU 20.7 38 0.0013 27.3 1.5 13 56-68 42-54 (105)
163 3fyb_A Protein of unknown func 20.5 39 0.0013 27.2 1.5 12 56-67 41-52 (104)
164 1nyp_A Pinch protein; LIM doma 20.4 54 0.0018 22.8 2.2 39 33-82 6-44 (66)
165 2k4b_A Transcriptional regulat 20.1 14 0.00047 29.1 -1.2 31 270-300 50-81 (99)
166 3mjh_B Early endosome antigen 20.1 24 0.00083 22.9 0.2 10 33-42 6-15 (34)
No 1
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.39 E-value=3.3e-13 Score=101.23 Aligned_cols=54 Identities=30% Similarity=0.768 Sum_probs=47.5
Q ss_pred CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
...+..|+||++.|.....+..++|+|.||..||..|+..+..||+||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 345678999999997667788899999999999999999999999999988754
No 2
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.39 E-value=2.4e-13 Score=108.21 Aligned_cols=52 Identities=35% Similarity=0.763 Sum_probs=46.3
Q ss_pred CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
..+..|+||++.|..++.+..++|+|.||..||..|+..+..||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 4567899999999776777888999999999999999999999999998764
No 3
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=4.5e-13 Score=101.82 Aligned_cols=54 Identities=31% Similarity=0.864 Sum_probs=46.9
Q ss_pred CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
...+..|+||++.|.......+++|+|.||..||..|+..+..||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 344789999999997766677789999999999999999999999999988753
No 4
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.37 E-value=2.5e-13 Score=104.26 Aligned_cols=55 Identities=22% Similarity=0.753 Sum_probs=47.8
Q ss_pred CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCc
Q 018812 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~ 84 (350)
..+..|+||++.|.....+.+++|+|.||..||..|+..+..||+||+.+...+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 3467999999999766666778999999999999999999999999999887543
No 5
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.35 E-value=3.2e-13 Score=96.81 Aligned_cols=50 Identities=30% Similarity=0.802 Sum_probs=44.1
Q ss_pred CccccccccccccCCCCeeeec-CCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812 31 CDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~-CgH~FC~~CI~~Wl~~s~sCPvCR~~l~ 80 (350)
++..|+||++.|..++.+..++ |+|.||..||..|++.+..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4679999999997766677776 9999999999999999999999998764
No 6
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=3.8e-13 Score=102.72 Aligned_cols=52 Identities=31% Similarity=0.776 Sum_probs=46.0
Q ss_pred CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
.++..|+||++.|...+.+..++|+|.||..||..|+..+..||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4567999999999776666788999999999999999999999999998864
No 7
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.33 E-value=9.1e-13 Score=101.09 Aligned_cols=60 Identities=17% Similarity=0.347 Sum_probs=49.0
Q ss_pred CCccccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCcchHHHHHH
Q 018812 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDATSQELLEA 92 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~~~~~ll~~ 92 (350)
.++..|+||++.|.+ +++++|||.||..||..|+.. ...||+|+..+...++..+..+..
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~ 66 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKS 66 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHH
T ss_pred cccCCCCCccccccC---CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHH
Confidence 457899999999944 677799999999999999987 778999999998766655444433
No 8
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=9.8e-13 Score=99.81 Aligned_cols=52 Identities=29% Similarity=0.562 Sum_probs=44.8
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCc
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~ 84 (350)
++..|+||++.|. +++.+++|+|.||..||..|+..+..||+||+.+...++
T Consensus 14 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 14 PYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQP 65 (72)
T ss_dssp GGGSCTTTSSCCS--SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCS
T ss_pred CCCCCCCCChHHH--CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccc
Confidence 4679999999994 455556999999999999999989999999999987654
No 9
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.31 E-value=8.7e-13 Score=98.99 Aligned_cols=57 Identities=30% Similarity=0.610 Sum_probs=47.7
Q ss_pred CCCCccccccccccccCC----CCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCc
Q 018812 28 QDSCDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~~----~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~ 84 (350)
..+++..|+||++.|.+. ..+++++|+|.||..||..|+..+..||+||+.+...++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhhe
Confidence 445578999999998541 334788999999999999999999999999999887654
No 10
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.30 E-value=6.5e-13 Score=107.47 Aligned_cols=60 Identities=27% Similarity=0.660 Sum_probs=48.6
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcC-CCCCCCCcCCCCCCcchHHHHHHH
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAV 93 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s-~sCPvCR~~l~~kd~~~~~ll~~v 93 (350)
+..|+||++.|. +++.+++|||.||..||..|+... ..||+||..+...++..+..+..+
T Consensus 22 ~~~C~IC~~~~~--~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i 82 (100)
T 3lrq_A 22 VFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEV 82 (100)
T ss_dssp HTBCTTTCSBCS--SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHH
T ss_pred CCCCccCCcccc--CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHH
Confidence 679999999994 343438999999999999999987 699999999987776655444443
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.29 E-value=1.8e-12 Score=92.76 Aligned_cols=50 Identities=34% Similarity=0.705 Sum_probs=43.4
Q ss_pred CccccccccccccCC-CCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812 31 CDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 31 ~d~~C~ICle~f~~~-~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~ 80 (350)
.+..|+||++.|.+. ..+.+++|+|.||..||..|+.....||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 467999999998543 35778899999999999999999999999998874
No 12
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.6e-12 Score=101.48 Aligned_cols=54 Identities=30% Similarity=0.711 Sum_probs=42.9
Q ss_pred CCCccccccccccccC-----------CCCe-eeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 29 DSCDDACSICLEEFSE-----------SDPS-TVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 29 d~~d~~C~ICle~f~~-----------~~~~-~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
+.+++.|+||++.|.+ .+.+ .+++|+|.||..||.+|+..+.+||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 12 DVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ 77 (81)
T ss_dssp SCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred cCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence 3456789999998843 2223 4456999999999999999999999999988654
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.9e-12 Score=96.33 Aligned_cols=52 Identities=31% Similarity=0.659 Sum_probs=43.9
Q ss_pred CCccccccccccccCC----CCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 30 SCDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~----~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
..+..|+||++.|.+. ..+.+++|+|.||..||..|+..+..||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4468999999998642 233778999999999999999999999999998764
No 14
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=4.8e-12 Score=97.95 Aligned_cols=48 Identities=33% Similarity=0.704 Sum_probs=42.7
Q ss_pred CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~ 80 (350)
..+..|+||++.|.+ +++++|+|.||..||..|+.....||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 346789999999944 667899999999999999998999999999986
No 15
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.27 E-value=1.7e-12 Score=104.14 Aligned_cols=60 Identities=23% Similarity=0.619 Sum_probs=48.9
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHH
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~v 93 (350)
+..|+||++.|.+ +..+++|||.||..||..|+..+..||+||..+...++..+..+..+
T Consensus 22 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ 81 (99)
T 2y43_A 22 LLRCGICFEYFNI--AMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDEL 81 (99)
T ss_dssp HTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHH
T ss_pred CCCcccCChhhCC--cCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHH
Confidence 5799999999943 33444999999999999999988999999999987766666555543
No 16
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.27 E-value=3.9e-12 Score=104.31 Aligned_cols=54 Identities=33% Similarity=0.679 Sum_probs=42.4
Q ss_pred CCCccccccccccccCCC---------------CeeeecCCccccHHHHHHHHh-----cCCCCCCCCcCCCCC
Q 018812 29 DSCDDACSICLEEFSESD---------------PSTVTSCKHEFHLQCVLEWCQ-----RSSQCPMCWQPISLK 82 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~---------------~~~vl~CgH~FC~~CI~~Wl~-----~s~sCPvCR~~l~~k 82 (350)
...++.|+||++.|.... ...+++|+|.||..||..|+. .+..||+||..+..+
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 334679999999995421 223789999999999999994 467899999988653
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2.8e-12 Score=97.05 Aligned_cols=51 Identities=27% Similarity=0.539 Sum_probs=44.0
Q ss_pred CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
...+..|+||++.|.+ ++.++|+|.||..||..|+.....||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH---PVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSS---EEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCC---CEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 3456899999999944 67779999999999999999989999999998743
No 18
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.25 E-value=2.9e-12 Score=93.91 Aligned_cols=54 Identities=30% Similarity=0.623 Sum_probs=45.6
Q ss_pred CccccccccccccCC----CCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCc
Q 018812 31 CDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (350)
Q Consensus 31 ~d~~C~ICle~f~~~----~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~ 84 (350)
++..|+||++.|.+. +.+.+++|+|.||..||..|+..+..||+||..+...+.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccce
Confidence 367999999998541 334778999999999999999999999999999887654
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.24 E-value=3.4e-12 Score=95.23 Aligned_cols=49 Identities=33% Similarity=0.855 Sum_probs=43.5
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
.+..|+||++.+ .+++..++|+|.||..||..|+..+..||+||..+..
T Consensus 4 ~~~~C~IC~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCC--CSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccc--cCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 467999999998 4556888999999999999999999999999998764
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.24 E-value=2.6e-12 Score=109.55 Aligned_cols=49 Identities=37% Similarity=0.839 Sum_probs=43.6
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd 83 (350)
+..|+||++.|.+ +++++|||.||..||..|+..+..||+||+.+....
T Consensus 53 ~~~C~iC~~~~~~---~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSS---EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccCC---ceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 5789999999944 677899999999999999999999999999987654
No 21
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.24 E-value=7.4e-12 Score=98.88 Aligned_cols=60 Identities=22% Similarity=0.464 Sum_probs=46.4
Q ss_pred CccccccccccccCCCCeeeec-CCccccHHHHHHHHhcC--CCCCCCCcCC-CCCCcchHHHHHHH
Q 018812 31 CDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRS--SQCPMCWQPI-SLKDATSQELLEAV 93 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~-CgH~FC~~CI~~Wl~~s--~sCPvCR~~l-~~kd~~~~~ll~~v 93 (350)
++..|+||++.|.+ +++++ |||.||..||..|+... ..||+||..+ ...++..+..+..+
T Consensus 12 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~ 75 (92)
T 3ztg_A 12 DELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQA 75 (92)
T ss_dssp TTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHH
T ss_pred cCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHH
Confidence 46899999999943 56678 99999999999999754 5899999997 44455555554443
No 22
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.23 E-value=6.7e-12 Score=104.77 Aligned_cols=60 Identities=20% Similarity=0.362 Sum_probs=48.5
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcC-CCCCCCCcCCCC-CCcchHHHHHHHH
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISL-KDATSQELLEAVE 94 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s-~sCPvCR~~l~~-kd~~~~~ll~~ve 94 (350)
+..|+||++.|.+ ++.++|||.||..||..|+... ..||+||..+.. .++..+..+..+.
T Consensus 52 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i 113 (124)
T 3fl2_A 52 TFQCICCQELVFR---PITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVL 113 (124)
T ss_dssp HTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHH
T ss_pred CCCCCcCChHHcC---cEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHH
Confidence 5789999999943 6777999999999999999854 489999999987 5555665555544
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=6.7e-12 Score=94.75 Aligned_cols=51 Identities=24% Similarity=0.649 Sum_probs=43.0
Q ss_pred CCccccccccccccCCCCeeeecCCccccHHHHHHHHh---cCCCCCCCCcCCCCCC
Q 018812 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMCWQPISLKD 83 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~---~s~sCPvCR~~l~~kd 83 (350)
.++..|+||++.|.+ +++++|+|.||..||..|+. ....||+||+.+...+
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 346899999999943 66779999999999999997 3568999999987654
No 24
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.22 E-value=6.7e-12 Score=102.34 Aligned_cols=50 Identities=26% Similarity=0.628 Sum_probs=42.9
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
++..|+||++.|. +++.+++|||.||..||..|+.....||+||..+...
T Consensus 14 ~~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHh--CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 3689999999994 3444449999999999999999989999999998865
No 25
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=8.8e-12 Score=97.07 Aligned_cols=53 Identities=26% Similarity=0.595 Sum_probs=44.7
Q ss_pred CccccccccccccCCCC-eeeecCCccccHHHHHHHHhcC---CCCCCCCcCCCCCC
Q 018812 31 CDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWCQRS---SQCPMCWQPISLKD 83 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~-~~vl~CgH~FC~~CI~~Wl~~s---~sCPvCR~~l~~kd 83 (350)
++..|+||++.|.+.+. +++++|+|.||..||..|+... ..||+||+.+...+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 46799999999965443 6788999999999999999876 78999999887643
No 26
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.22 E-value=6.1e-12 Score=103.77 Aligned_cols=52 Identities=23% Similarity=0.611 Sum_probs=43.8
Q ss_pred CCccccccccccccCC---------------CCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 30 SCDDACSICLEEFSES---------------DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~---------------~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
.+++.|+||++.|... ..+.+++|+|.||..||..|+..+.+||+||+.+..
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence 3578999999998542 125668999999999999999999999999998754
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=8.1e-12 Score=93.03 Aligned_cols=50 Identities=22% Similarity=0.468 Sum_probs=42.1
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHh-cCCCCCCCCcCCCCCC
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLKD 83 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~-~s~sCPvCR~~l~~kd 83 (350)
++..|+||++.+.+ ++.++|||.||..||..|+. ....||+||+.+...+
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 14 DKYKCEKCHLVLCS---PKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCEECTTTCCEESS---CCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred cCCCCCCCChHhcC---eeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 46899999999943 45579999999999999995 5678999999987654
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.21 E-value=8.5e-12 Score=95.33 Aligned_cols=50 Identities=26% Similarity=0.525 Sum_probs=41.7
Q ss_pred CccccccccccccCCCCeeeec-CCccccHHHHHHHHhcC--CCCCCCCcCCCCCC
Q 018812 31 CDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRS--SQCPMCWQPISLKD 83 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~-CgH~FC~~CI~~Wl~~s--~sCPvCR~~l~~kd 83 (350)
++..|+||++.|. + +++++ |+|.||..||..|+..+ ..||+||+.+...+
T Consensus 14 ~~~~C~IC~~~~~--~-p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 14 DELLCLICKDIMT--D-AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGGSCSSSCCCCT--T-CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCcCCChHHh--C-CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 4689999999994 3 55678 99999999999999865 68999999866544
No 29
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.20 E-value=1.4e-11 Score=97.24 Aligned_cols=60 Identities=8% Similarity=-0.044 Sum_probs=51.4
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHH
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~v 93 (350)
++..|+||++.|.+ +++++|||.||..||..|+.....||+|+..+...++.++..+...
T Consensus 13 ~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~ 72 (85)
T 2kr4_A 13 DEFRDPLMDTLMTD---PVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQ 72 (85)
T ss_dssp TTTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHH
T ss_pred hheECcccCchhcC---CeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHH
Confidence 47899999999955 6777999999999999999988999999999998877776655443
No 30
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.19 E-value=1e-11 Score=95.62 Aligned_cols=51 Identities=27% Similarity=0.687 Sum_probs=43.2
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHhc------CCCCCCCCcCCCCCCc
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPISLKDA 84 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~------s~sCPvCR~~l~~kd~ 84 (350)
.+..|+||++.|.+ +++++|+|.||..||..|+.. ...||+||..+...++
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecw_A 18 EEVTCPICLELLKE---PVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNL 74 (85)
T ss_dssp TTTSCTTTCSCCSS---CEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCC
T ss_pred cCCCCcCCChhhCc---ceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhC
Confidence 36799999999943 557899999999999999987 6789999999876543
No 31
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.17 E-value=3.4e-11 Score=97.73 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=53.5
Q ss_pred CccccccccccccCCCCeeeecCC-ccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHHHHH
Q 018812 31 CDDACSICLEEFSESDPSTVTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQE 96 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~Cg-H~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~ve~e 96 (350)
++..|+||++.|.+ +++++|| |.||..||..|+.....||+|+.++...++.++..+......
T Consensus 21 ~~~~CpI~~~~m~d---PV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~ 84 (98)
T 1wgm_A 21 DEFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQR 84 (98)
T ss_dssp TTTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHH
T ss_pred HhcCCcCccccccC---CeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHH
Confidence 47899999999955 6778999 999999999999988899999999998888877666554433
No 32
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.17 E-value=2.9e-11 Score=98.49 Aligned_cols=62 Identities=10% Similarity=-0.033 Sum_probs=53.1
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHHHH
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAVEQ 95 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~ve~ 95 (350)
++..|+||++.|.+ +++++|||.||..||..|+.....||+|+.++...++.++..+.....
T Consensus 28 ~~~~CpI~~~~m~d---PV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~ 89 (100)
T 2kre_A 28 DEFRDPLMDTLMTD---PVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQ 89 (100)
T ss_dssp TTTBCTTTCSBCSS---EEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHH
T ss_pred HhhCCcCccCcccC---CeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHH
Confidence 47899999999955 677799999999999999998889999999999888887766655443
No 33
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.17 E-value=2.5e-11 Score=105.47 Aligned_cols=62 Identities=19% Similarity=0.414 Sum_probs=50.0
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHhcCC-CCCCCCcCCCCC-CcchHHHHHHHHH
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISLK-DATSQELLEAVEQ 95 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~-sCPvCR~~l~~k-d~~~~~ll~~ve~ 95 (350)
++..|+||++.|.+ +++++|+|.||..||..|+.... .||+||..+... .+..+..+..+..
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~ 140 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLD 140 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHH
T ss_pred cCCEeecCChhhcC---CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHH
Confidence 35789999999944 66789999999999999998754 899999999877 5566665555443
No 34
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.3e-11 Score=94.93 Aligned_cols=51 Identities=25% Similarity=0.624 Sum_probs=43.4
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHhc------CCCCCCCCcCCCCCCc
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR------SSQCPMCWQPISLKDA 84 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~------s~sCPvCR~~l~~kd~ 84 (350)
++..|+||++.|.+ +++++|+|.||..||..|+.. ...||+||..+...++
T Consensus 18 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~ 74 (85)
T 2ecv_A 18 EEVTCPICLELLTQ---PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENI 74 (85)
T ss_dssp CCCCCTTTCSCCSS---CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSC
T ss_pred CCCCCCCCCcccCC---ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhc
Confidence 36899999999943 566799999999999999987 7789999999886543
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.16 E-value=4.6e-12 Score=96.90 Aligned_cols=51 Identities=27% Similarity=0.590 Sum_probs=42.9
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHhc-------CCCCCCCCcCCCCCCc
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-------SSQCPMCWQPISLKDA 84 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-------s~sCPvCR~~l~~kd~ 84 (350)
++..|+||++.|.+ +++++|||.||..||..|+.. ...||+||..+...++
T Consensus 11 ~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l 68 (79)
T 2egp_A 11 EEVTCPICLELLTE---PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHL 68 (79)
T ss_dssp CCCEETTTTEECSS---CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGG
T ss_pred cCCCCcCCCcccCC---eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhC
Confidence 46899999999943 556799999999999999976 5689999999886543
No 36
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=5.3e-12 Score=94.85 Aligned_cols=50 Identities=24% Similarity=0.820 Sum_probs=43.6
Q ss_pred CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCC
Q 018812 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd 83 (350)
..+..|+||++.+.+ ++++|+|.||..||..|+.....||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence 446899999999843 77899999999999999998999999999887544
No 37
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.13 E-value=1.9e-11 Score=106.77 Aligned_cols=60 Identities=23% Similarity=0.619 Sum_probs=46.0
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCC-CcchHHHHHHH
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLK-DATSQELLEAV 93 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~k-d~~~~~ll~~v 93 (350)
+..|+||++.|. +++.+++|||.||..||..|+.. ...||+||..+... .+..+..+..+
T Consensus 54 ~~~C~IC~~~~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~ 115 (165)
T 2ckl_B 54 ELMCPICLDMLK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDAL 115 (165)
T ss_dssp HHBCTTTSSBCS--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHH
T ss_pred CCCCcccChHhh--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHH
Confidence 568999999994 44444599999999999999987 77899999998643 34444444443
No 38
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=4.3e-11 Score=88.14 Aligned_cols=43 Identities=28% Similarity=0.783 Sum_probs=36.5
Q ss_pred CCccccccccccccCCCCeeeecCCccccHHHHHHHHh---cCCCCCCC
Q 018812 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMC 75 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~---~s~sCPvC 75 (350)
.++..|+||++.|.+ +++++|||.||..||..|+. ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSS---CEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCC---eEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 347899999999943 56679999999999999998 45689998
No 39
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.09 E-value=4.3e-11 Score=99.24 Aligned_cols=62 Identities=19% Similarity=0.433 Sum_probs=49.8
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHhcCC-CCCCCCcCCCCCCcchHHHHHHHHH
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISLKDATSQELLEAVEQ 95 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~-sCPvCR~~l~~kd~~~~~ll~~ve~ 95 (350)
++..|+||++.|.+ ++.++|||.||..||..|+.... .||+||..+...+......+.....
T Consensus 17 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~ 79 (118)
T 3hct_A 17 SKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREIL 79 (118)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred CCCCCCcCChhhcC---eEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHc
Confidence 46799999999943 57789999999999999998765 9999999998876655555544443
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=1.8e-11 Score=99.53 Aligned_cols=50 Identities=34% Similarity=0.693 Sum_probs=41.9
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCC---CCCCCCcCCCCCCc
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS---QCPMCWQPISLKDA 84 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~---sCPvCR~~l~~kd~ 84 (350)
+..|+||++.|.+ ++.++|||.||..||..|+.... .||+||..+...++
T Consensus 21 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 73 (112)
T 1jm7_A 21 ILECPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73 (112)
T ss_dssp HTSCSSSCCCCSS---CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTC
T ss_pred CCCCcccChhhcC---eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhc
Confidence 5689999999943 55679999999999999998653 89999999876543
No 41
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.09 E-value=5.1e-11 Score=88.41 Aligned_cols=54 Identities=24% Similarity=0.546 Sum_probs=42.5
Q ss_pred Cccccccccc-cccCCC-CeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCc
Q 018812 31 CDDACSICLE-EFSESD-PSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDA 84 (350)
Q Consensus 31 ~d~~C~ICle-~f~~~~-~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~ 84 (350)
++..|+||++ .|.+.. ...+++|||.||..||..|+.. ...||+||+.+...++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 3678999999 774422 1246799999999999999765 4679999999987654
No 42
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.08 E-value=1.2e-11 Score=103.85 Aligned_cols=53 Identities=25% Similarity=0.629 Sum_probs=1.9
Q ss_pred CCCccccccccccccCCC---------------CeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 29 DSCDDACSICLEEFSESD---------------PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~---------------~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
+..++.|+||++.|.... .+..++|+|.||..||..|+..+.+||+||+.+..
T Consensus 45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CCCC----------------------------------------------------------------
T ss_pred cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 344689999999995311 23346999999999999999999999999998754
No 43
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=3.1e-11 Score=99.98 Aligned_cols=57 Identities=25% Similarity=0.603 Sum_probs=46.5
Q ss_pred ccccccccccccCCCCeeee-cCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHHH
Q 018812 32 DDACSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEAV 93 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl-~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~v 93 (350)
+..|+||++.|. + ++++ +|||.||..||..|+. ..||+||..+...++..+..+..+
T Consensus 22 ~~~C~IC~~~~~--~-pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l 79 (117)
T 1jm7_B 22 LLRCSRCTNILR--E-PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSM 79 (117)
T ss_dssp TTSCSSSCSCCS--S-CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHH
T ss_pred CCCCCCCChHhh--C-ccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHH
Confidence 689999999994 4 4555 9999999999999997 789999999987776665544443
No 44
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.07 E-value=5.7e-11 Score=98.46 Aligned_cols=54 Identities=30% Similarity=0.626 Sum_probs=45.7
Q ss_pred CccccccccccccCC----CCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCc
Q 018812 31 CDDACSICLEEFSES----DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (350)
Q Consensus 31 ~d~~C~ICle~f~~~----~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~ 84 (350)
++..|+||++.|.+. ..+++++|||.||..||..|+..+..||+||+.+...+.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 63 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCE
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccc
Confidence 478999999999541 233788999999999999999999999999999876543
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.05 E-value=2.8e-11 Score=99.59 Aligned_cols=49 Identities=27% Similarity=0.628 Sum_probs=41.5
Q ss_pred CCccccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCC
Q 018812 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL 81 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~ 81 (350)
.++..|+||++.|.+ ++.++|||.||..||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCc---eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 346899999999943 566799999999999999976 5689999998863
No 46
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.04 E-value=1.3e-10 Score=107.54 Aligned_cols=64 Identities=16% Similarity=0.134 Sum_probs=52.4
Q ss_pred CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcC-CCCCCCCcCCCCCCcchHHHHHHHHH
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAVEQ 95 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s-~sCPvCR~~l~~kd~~~~~ll~~ve~ 95 (350)
...+..|+||++.|.+ |++++|||.||..||..|+... ..||+|+.++...++.++..+.....
T Consensus 205 ~~~~~~c~i~~~~~~d---Pv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~ 269 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVID 269 (281)
T ss_dssp CCSTTBCTTTCSBCSS---EEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHH
T ss_pred CCcccCCcCcCCHhcC---CeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHH
Confidence 3457899999999954 6778999999999999999864 45999999998888877766665443
No 47
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=9.5e-11 Score=84.36 Aligned_cols=42 Identities=36% Similarity=1.024 Sum_probs=35.5
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHh---cCCCCCCC
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ---RSSQCPMC 75 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~---~s~sCPvC 75 (350)
++..|+||++.|.+ +++++|+|.||..||..|+. ....||+|
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 46799999999944 56689999999999999954 46789998
No 48
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=2e-10 Score=92.01 Aligned_cols=63 Identities=21% Similarity=0.440 Sum_probs=50.3
Q ss_pred CccccccccccccCCCCeeeec-CCccccHHHHHHHHhcC------CCCCC--CCcC-CCCCCcchHHHHHHHHHH
Q 018812 31 CDDACSICLEEFSESDPSTVTS-CKHEFHLQCVLEWCQRS------SQCPM--CWQP-ISLKDATSQELLEAVEQE 96 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~-CgH~FC~~CI~~Wl~~s------~sCPv--CR~~-l~~kd~~~~~ll~~ve~e 96 (350)
.+..|+||++.|.+ +++++ |||.||..||..|+... ..||+ |+.. +...++.++..+......
T Consensus 6 ~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~ 78 (94)
T 2yu4_A 6 SGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIEN 78 (94)
T ss_dssp SCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHH
T ss_pred cEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHH
Confidence 47899999999944 66664 99999999999999764 48999 9887 777787777666655443
No 49
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.7e-10 Score=90.45 Aligned_cols=53 Identities=30% Similarity=0.697 Sum_probs=43.6
Q ss_pred CCCccccccccccccCCCCeeeecCC-----ccccHHHHHHHHhcC--CCCCCCCcCCCCC
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCK-----HEFHLQCVLEWCQRS--SQCPMCWQPISLK 82 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~Cg-----H~FC~~CI~~Wl~~s--~sCPvCR~~l~~k 82 (350)
..+++.|.||++.|..+++. +++|. |.||..||.+|+..+ ..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 44567999999998765554 68996 999999999999875 4899999988753
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.99 E-value=1.9e-10 Score=94.73 Aligned_cols=51 Identities=33% Similarity=0.628 Sum_probs=43.9
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCCCCcc
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISLKDAT 85 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd~~ 85 (350)
+..|+||++.|.+ ++.++|||.||..||..|+.. ...||+||..+...++.
T Consensus 23 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~ 74 (116)
T 1rmd_A 23 SISCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE 74 (116)
T ss_dssp HTBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB
T ss_pred CCCCCCCCcHhcC---cEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhcc
Confidence 6789999999943 666899999999999999987 67899999998876543
No 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.95 E-value=4.5e-10 Score=87.55 Aligned_cols=53 Identities=19% Similarity=0.434 Sum_probs=41.4
Q ss_pred CCccccccccccccCCCCeeeec--CCccccHHHHHHHHhc-CCCCCCCCcCCCCCC
Q 018812 30 SCDDACSICLEEFSESDPSTVTS--CKHEFHLQCVLEWCQR-SSQCPMCWQPISLKD 83 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~--CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~kd 83 (350)
.++..|+||++.|...+ +..++ |||.||..||..|+.. ...||+||+.+....
T Consensus 9 ~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 34789999999985423 33444 9999999999998854 568999999988654
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.95 E-value=2.8e-10 Score=94.24 Aligned_cols=57 Identities=30% Similarity=0.608 Sum_probs=47.3
Q ss_pred CCCCccccccccccccC----CCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCCc
Q 018812 28 QDSCDDACSICLEEFSE----SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDA 84 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~----~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~ 84 (350)
.+..+..|+||++.|.. ...+..++|+|.||..||..|+...+.||+||..+...++
T Consensus 68 i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 68 IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128 (133)
T ss_dssp CSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGE
T ss_pred cCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChhcc
Confidence 34557899999999854 1234778999999999999999999999999999987654
No 53
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.93 E-value=1.3e-09 Score=97.73 Aligned_cols=64 Identities=16% Similarity=0.143 Sum_probs=52.6
Q ss_pred CCccccccccccccCCCCeeeecCCccccHHHHHHHHhcC-CCCCCCCcCCCCCCcchHHHHHHHHHH
Q 018812 30 SCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAVEQE 96 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s-~sCPvCR~~l~~kd~~~~~ll~~ve~e 96 (350)
..+..||||++.|.+ |++++|||.||..||..|+... .+||+|+.++...++.++..+......
T Consensus 104 p~~f~CPI~~elm~D---PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~ 168 (179)
T 2f42_A 104 PDYLCGKISFELMRE---PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDA 168 (179)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHH
T ss_pred cHhhcccCccccCCC---CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHH
Confidence 357899999999954 6777999999999999999874 469999999998888877666654443
No 54
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.88 E-value=3.3e-10 Score=82.27 Aligned_cols=48 Identities=25% Similarity=0.480 Sum_probs=39.8
Q ss_pred CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
+.++..|+||++.|.+ +++++|+|.||..||..| ...||+||+.+...
T Consensus 3 e~~~~~C~IC~~~~~~---p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 3 EFQFLRCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp SCCCSSCSSSCSSCBC---CSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred cccCCCceEeCCccCC---eEEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 3457899999999954 577899999999999774 56899999988754
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.86 E-value=4.7e-10 Score=96.53 Aligned_cols=48 Identities=17% Similarity=0.409 Sum_probs=41.0
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHhcCC-CCCCCCcCCCC
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSS-QCPMCWQPISL 81 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~-sCPvCR~~l~~ 81 (350)
++..|+||++.|.+ ++.++|||.||..||..|+.... .||+||..+..
T Consensus 30 ~~~~C~IC~~~~~~---pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 30 AKYLCSACRNVLRR---PFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred cCcCCCCCChhhcC---cEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 47899999999944 56789999999999999998664 89999997643
No 56
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.86 E-value=1.1e-09 Score=95.97 Aligned_cols=61 Identities=20% Similarity=0.445 Sum_probs=48.8
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHhcC-CCCCCCCcCCCCCCcchHHHHHHHH
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS-SQCPMCWQPISLKDATSQELLEAVE 94 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s-~sCPvCR~~l~~kd~~~~~ll~~ve 94 (350)
++..|+||++.|.+ ++.++|||.||..||..|+... ..||+||..+...++.....+....
T Consensus 17 ~~~~C~IC~~~~~~---pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i 78 (170)
T 3hcs_A 17 SKYECPICLMALRE---AVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI 78 (170)
T ss_dssp GGGBCTTTCSBCSS---EEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred CCCCCCCCChhhcC---cEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHH
Confidence 47899999999943 5668999999999999999764 4999999999877665554444433
No 57
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.86 E-value=1.4e-09 Score=81.23 Aligned_cols=49 Identities=24% Similarity=0.592 Sum_probs=41.6
Q ss_pred CCccccccccccccCCCCeeee--cCCcc-ccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 30 SCDDACSICLEEFSESDPSTVT--SCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl--~CgH~-FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
.++..|.||++.+.+ +.++ +|||. ||..|+..|+..+..||+||+.+..
T Consensus 6 ~~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 57 (64)
T 2vje_A 6 NAIEPCVICQGRPKN---GCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQM 57 (64)
T ss_dssp GGGSCCTTTSSSCSC---EEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCE
T ss_pred CCcCCCCcCCCCCCC---EEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhc
Confidence 346799999999844 4555 99999 8999999999988999999998853
No 58
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=2.4e-09 Score=83.04 Aligned_cols=49 Identities=24% Similarity=0.616 Sum_probs=41.2
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcC--CCCCCCCcCCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLK 82 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s--~sCPvCR~~l~~k 82 (350)
-..|.||++.|..+ .....|+|.||..||.+|++.+ .+||+|+..|...
T Consensus 15 i~~C~IC~~~i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 15 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SCBCSSSCCBCSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCcCcchhhHcccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 46899999999643 3445899999999999999887 7899999988754
No 59
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.79 E-value=1.2e-09 Score=83.55 Aligned_cols=43 Identities=28% Similarity=0.716 Sum_probs=37.9
Q ss_pred ccccccccccccCCCCeeeecCCcc-ccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~-FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
+..|+||++.+.+ ++.++|||. ||..|+..| ..||+||..+..
T Consensus 24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC----ccCCCcCcCccC
Confidence 5799999999844 677899999 999999988 889999998864
No 60
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.79 E-value=3.1e-09 Score=105.53 Aligned_cols=48 Identities=25% Similarity=0.642 Sum_probs=42.3
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHh-cCCCCCCCCcCCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-RSSQCPMCWQPISLK 82 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~-~s~sCPvCR~~l~~k 82 (350)
+..|+||++.+.+ ++.++|||.||..||..|+. ....||+||..+...
T Consensus 332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 4699999999844 77889999999999999998 678999999988754
No 61
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.79 E-value=3e-09 Score=79.21 Aligned_cols=48 Identities=21% Similarity=0.508 Sum_probs=40.7
Q ss_pred CccccccccccccCCCCeeee--cCCcc-ccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 31 CDDACSICLEEFSESDPSTVT--SCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl--~CgH~-FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
.+..|.||++.+.+ +.++ +|||. ||..|+..|......||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRD---GNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSC---EEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCC---eEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhc
Confidence 46789999998843 4455 99998 9999999999888899999998853
No 62
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.78 E-value=1.8e-09 Score=102.02 Aligned_cols=61 Identities=23% Similarity=0.505 Sum_probs=50.2
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcC--CCCCC--CCcCCCCCCcchHHHHHHHH
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPM--CWQPISLKDATSQELLEAVE 94 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s--~sCPv--CR~~l~~kd~~~~~ll~~ve 94 (350)
+..||||++.| .+|++.+.|||.||..||..|+... ..||+ |++.+...++.++..+..+.
T Consensus 181 el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lv 245 (267)
T 3htk_C 181 ELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRC 245 (267)
T ss_dssp CSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHH
T ss_pred eeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHH
Confidence 56899999999 5565556999999999999999764 47999 99999988888776665443
No 63
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=8.5e-09 Score=78.87 Aligned_cols=43 Identities=28% Similarity=0.729 Sum_probs=36.3
Q ss_pred ccccccccccccCCCCeeeecCCcc-ccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~-FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
+..|+||++.+.+ +++++|+|. ||..|+.. ...||+||..+..
T Consensus 25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 5689999999844 677899999 99999954 4789999998865
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=5.3e-08 Score=73.65 Aligned_cols=46 Identities=26% Similarity=0.576 Sum_probs=38.3
Q ss_pred CCCccccccccccccCCCCeeeecCCcc-ccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~-FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
+.++..|.||++.+.+ +++++|+|. ||..|+.. ...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 3446789999999844 778899999 99999973 5789999998865
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.51 E-value=4.5e-08 Score=72.78 Aligned_cols=51 Identities=12% Similarity=0.285 Sum_probs=43.7
Q ss_pred ccccccccccccCCCCeeee-cCCccccHHHHHHHHhcCCCCCCCCcCCCCCCcc
Q 018812 32 DDACSICLEEFSESDPSTVT-SCKHEFHLQCVLEWCQRSSQCPMCWQPISLKDAT 85 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl-~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~ 85 (350)
...|+||++.+.+ ++++ +|||.|+..||.+|+..+..||++++++...++.
T Consensus 3 ~~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Li 54 (61)
T 2bay_A 3 HMLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV 54 (61)
T ss_dssp -CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCE
T ss_pred eEEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcE
Confidence 4689999999944 5666 8999999999999999888899999999876653
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.50 E-value=2.5e-08 Score=77.57 Aligned_cols=43 Identities=28% Similarity=0.624 Sum_probs=37.0
Q ss_pred ccccccccccccCCCCeeeecCCcc-ccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~-FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
+..|.||++.+.+ +..++|||. ||..|+..| ..||+||..+..
T Consensus 18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 5689999999844 777899999 999999876 489999998864
No 67
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.49 E-value=7.3e-08 Score=76.54 Aligned_cols=51 Identities=22% Similarity=0.617 Sum_probs=38.4
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHhc--------CCCCCC--CCcC--CCC
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR--------SSQCPM--CWQP--ISL 81 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~--------s~sCPv--CR~~--l~~ 81 (350)
.+.+|+||++.+...+...+++|+|.||..||..|+.. ...||. |+.. +..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~ 66 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE 66 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence 36789999999854222233479999999999999863 136999 9988 554
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.38 E-value=6.2e-08 Score=94.77 Aligned_cols=52 Identities=25% Similarity=0.585 Sum_probs=39.8
Q ss_pred CCccccccccccccCCC-Ce-e---eecCCccccHHHHHHHHhcC-----------CCCCCCCcCCCC
Q 018812 30 SCDDACSICLEEFSESD-PS-T---VTSCKHEFHLQCVLEWCQRS-----------SQCPMCWQPISL 81 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~-~~-~---vl~CgH~FC~~CI~~Wl~~s-----------~sCPvCR~~l~~ 81 (350)
+....|+||++.+.+.. -+ . ...|+|.||..||.+|++.. ..||+||+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 34668999999986522 22 1 24899999999999999752 469999998764
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.33 E-value=9e-08 Score=93.72 Aligned_cols=43 Identities=21% Similarity=0.623 Sum_probs=37.7
Q ss_pred ccccccccccccCCCCeeeecCCcc-ccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHE-FHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~-FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
+..|+||++.+.+ ++.++|||. ||..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence 5789999999944 677899999 999999887 789999998864
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.29 E-value=6e-07 Score=66.51 Aligned_cols=50 Identities=24% Similarity=0.570 Sum_probs=38.8
Q ss_pred CCCccccccccccccCCCCeeeecCC--c---cccHHHHHHHHhc--CCCCCCCCcCCCC
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCK--H---EFHLQCVLEWCQR--SSQCPMCWQPISL 81 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~Cg--H---~FC~~CI~~Wl~~--s~sCPvCR~~l~~ 81 (350)
++++..|.||++.. +++ .++||. | .||..||.+|+.. +..||+|+..+..
T Consensus 3 ~~~~~~CrIC~~~~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEEL--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEEC--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCC--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 45577999999975 333 357865 4 9999999999974 5789999988754
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.03 E-value=2.6e-06 Score=69.39 Aligned_cols=46 Identities=24% Similarity=0.569 Sum_probs=38.2
Q ss_pred ccccccccccCCCCeeeecCCccccHHHHHHHHhc-CCCCCCCCcCCCC
Q 018812 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-SSQCPMCWQPISL 81 (350)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-s~sCPvCR~~l~~ 81 (350)
.|++|--.+ ....++.||+|+||..|+..|.++ .+.||+|+.++..
T Consensus 3 fC~~C~~Pi--~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBC--SEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCe--EEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 488888777 334678899999999999999854 6899999998864
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.57 E-value=4.5e-05 Score=70.91 Aligned_cols=50 Identities=24% Similarity=0.579 Sum_probs=40.2
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcC--CCCCCCCcCCCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQPISLKD 83 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s--~sCPvCR~~l~~kd 83 (350)
-..|.||.+.+..+ .....|+|.||..|+..|++.. ..||.|+..|....
T Consensus 180 i~~C~iC~~iv~~g--~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 180 VKICNICHSLLIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp CCBCTTTCSBCSSC--EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CCcCcchhhHHhCC--cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 46899999998543 3444599999999999999765 48999999887654
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.18 E-value=0.0017 Score=52.31 Aligned_cols=45 Identities=29% Similarity=0.659 Sum_probs=37.1
Q ss_pred cccccccccccCCCCeeeecC-CccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 33 DACSICLEEFSESDPSTVTSC-KHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~C-gH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
..|-.|+-..+ .+..| .|++|..|+...+..+..||+|+.++..+
T Consensus 29 ~nCKsCWf~~k-----~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 29 QFCKSCWFENK-----GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCSSCSCCS-----SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred ccChhhccccC-----CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 47999987652 23456 59999999999999999999999998865
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.43 E-value=0.0071 Score=47.84 Aligned_cols=34 Identities=12% Similarity=0.347 Sum_probs=25.9
Q ss_pred CccccccccccccCCCCeee--ecCCccccHHHHHHHH
Q 018812 31 CDDACSICLEEFSESDPSTV--TSCKHEFHLQCVLEWC 66 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~v--l~CgH~FC~~CI~~Wl 66 (350)
++..|+||.+.+. .+++. +.|+|.||..|+..|.
T Consensus 2 ee~~C~~C~~~~~--~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPA--QDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSC--CBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCC--CCceEECCcCChHHhHHHCHHHh
Confidence 4689999997642 22333 8999999999999843
No 75
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.74 E-value=0.29 Score=53.53 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=49.8
Q ss_pred CCccccccccccccCCCCeeeecCC-ccccHHHHHHHHhcCCCCCCCCcCCCCCCcchHHHHHH
Q 018812 30 SCDDACSICLEEFSESDPSTVTSCK-HEFHLQCVLEWCQRSSQCPMCWQPISLKDATSQELLEA 92 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~Cg-H~FC~~CI~~Wl~~s~sCPvCR~~l~~kd~~~~~ll~~ 92 (350)
-++..|||-++.+.+ |++++.| +.|=..+|.+|+..+.+||+=|+++...++.++..+..
T Consensus 889 P~~F~cPIs~~lM~D---PVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~ 949 (968)
T 3m62_A 889 PDEFLDPLMYTIMKD---PVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQ 949 (968)
T ss_dssp CGGGBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHH
T ss_pred cHHhCCcchhhHHhC---CeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHH
Confidence 346789999999955 6777887 68999999999998999999999999887777655443
No 76
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.49 E-value=0.19 Score=37.46 Aligned_cols=53 Identities=23% Similarity=0.485 Sum_probs=35.9
Q ss_pred hccCCCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcC----CCCCCCCcCC
Q 018812 24 EGGIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCWQPI 79 (350)
Q Consensus 24 ~g~~qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s----~sCPvCR~~l 79 (350)
++......+..|.||.+. ++-+.--.|...||..|+...+... -.||.|....
T Consensus 4 E~~~~~~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 4 EGQQNLAPGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTTTCCCTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred ccccCCCCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 343344456789999864 3333334788999999998777543 3699996543
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=87.42 E-value=0.43 Score=47.00 Aligned_cols=60 Identities=25% Similarity=0.444 Sum_probs=43.1
Q ss_pred cccccccccccCCCCeeeecCCccccHH--HHHHHHhcC--CCCCCCCcCCCCCCcchHHHHHHHH
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQ--CVLEWCQRS--SQCPMCWQPISLKDATSQELLEAVE 94 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~--CI~~Wl~~s--~sCPvCR~~l~~kd~~~~~ll~~ve 94 (350)
+.|||-+..+ ..|.+-..|.|.-|++ -+..+..+. -.||+|.+.+...++.....+..+.
T Consensus 250 L~CPlS~~ri--~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL 313 (371)
T 3i2d_A 250 LQCPISYTRM--KYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDIL 313 (371)
T ss_dssp SBCTTTSSBC--SSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHH
T ss_pred ecCCCccccc--cccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHH
Confidence 4699888777 5677778999985554 344444333 4699999999998888776665554
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=86.10 E-value=0.55 Score=46.01 Aligned_cols=60 Identities=15% Similarity=0.294 Sum_probs=43.2
Q ss_pred cccccccccccCCCCeeeecCCcccc--HHHHHHHHhcC--CCCCCCCcCCCCCCcchHHHHHHHH
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFH--LQCVLEWCQRS--SQCPMCWQPISLKDATSQELLEAVE 94 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC--~~CI~~Wl~~s--~sCPvCR~~l~~kd~~~~~ll~~ve 94 (350)
+.|||-+..+ ..|.+-..|.|.-| +.-+..+..+. -.||+|.+.+...++.....+..+.
T Consensus 216 L~CPlS~~ri--~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL 279 (360)
T 4fo9_A 216 LMCPLGKMRL--TIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEIL 279 (360)
T ss_dssp SBCTTTCSBC--SSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHH
T ss_pred eeCCCcccee--ccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHH
Confidence 4699888777 55677789999844 44444444433 4699999999998888776666554
No 79
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=84.24 E-value=0.61 Score=36.52 Aligned_cols=36 Identities=28% Similarity=0.627 Sum_probs=27.4
Q ss_pred CCccccccccccccCCCCeeeecC----CccccHHHHHHHHhc
Q 018812 30 SCDDACSICLEEFSESDPSTVTSC----KHEFHLQCVLEWCQR 68 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl~C----gH~FC~~CI~~Wl~~ 68 (350)
.-.+.|.+|.+.+.+. ....| .|.||+.|-+..+++
T Consensus 13 ~a~l~CtlC~erLEdt---HFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDT---HFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSST---TSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccC---ceeeCCCccCCeeeccccHHHHHh
Confidence 3457899999999653 22244 699999999999875
No 80
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=83.17 E-value=1.1 Score=35.33 Aligned_cols=36 Identities=19% Similarity=0.369 Sum_probs=24.1
Q ss_pred CCCccccccccccccCCCCeeeecCCccccHHHHHHH
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEW 65 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~W 65 (350)
-..|+.|.||--.- ..+..-.--|+-+||..|+.+.
T Consensus 12 ~~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 12 VVNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCCcccCcccccc-ccceeccccccccccHhhcccc
Confidence 34588999996332 2221222358899999999986
No 81
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=79.98 E-value=0.21 Score=36.37 Aligned_cols=49 Identities=22% Similarity=0.495 Sum_probs=32.2
Q ss_pred CCCccccccccccccCCCCe-eeecCCccccHHHHHHHHh-----cCCCCCCCCc
Q 018812 29 DSCDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQ-----RSSQCPMCWQ 77 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~-~vl~CgH~FC~~CI~~Wl~-----~s~sCPvCR~ 77 (350)
++++..|+||...+.+.... ..-.|...||..|+.--.. ....||.|+.
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence 34577899999887432222 2247889999999853321 2457998865
No 82
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=79.42 E-value=0.76 Score=33.40 Aligned_cols=48 Identities=19% Similarity=0.574 Sum_probs=32.3
Q ss_pred CCCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhc----CCCCCCCCc
Q 018812 27 IQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (350)
Q Consensus 27 ~qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~----s~sCPvCR~ 77 (350)
..+..+..|.||... ++-+.--.|...||..|+..-+.. .-.||.|..
T Consensus 6 ~~~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 6 YETDHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CSSCCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred ccCCCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 345567899999874 222233468889999999764432 236999954
No 83
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=75.66 E-value=0.57 Score=35.13 Aligned_cols=50 Identities=22% Similarity=0.372 Sum_probs=31.6
Q ss_pred CCccccccccccccCCCCe-eeecCCccccHHHHHHHHh----cCCCCCCCCcCCC
Q 018812 30 SCDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQ----RSSQCPMCWQPIS 80 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~-~vl~CgH~FC~~CI~~Wl~----~s~sCPvCR~~l~ 80 (350)
.+...|.||..... +... ..-.|.-.||..|+..-.. ....||.|...+.
T Consensus 16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 34567999987642 1111 2236889999999865432 2346999966543
No 84
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=75.49 E-value=0.56 Score=41.03 Aligned_cols=46 Identities=22% Similarity=0.535 Sum_probs=32.0
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHHhc----CCCCCCCCcCC
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQPI 79 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~----s~sCPvCR~~l 79 (350)
.++.|.||.+. ++-+..-.|.-.||..|+...+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 57889999855 333333468899999998665543 23699997654
No 85
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=73.81 E-value=0.85 Score=36.67 Aligned_cols=49 Identities=24% Similarity=0.434 Sum_probs=31.8
Q ss_pred CCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhc----CCCCCCCC
Q 018812 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCW 76 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~----s~sCPvCR 76 (350)
.+..++.|.||.+.-...+-+.-..|...||..|+...+.. .-.||.|+
T Consensus 3 ~~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 3 SGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 45568899999876311122344688999999999766532 22466553
No 86
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=71.46 E-value=5.7 Score=31.51 Aligned_cols=53 Identities=15% Similarity=0.339 Sum_probs=36.5
Q ss_pred CCCCccccccccccccCCC--C--eeeecCCccccHHHHHH-HHhcCCCCCCCCcCCC
Q 018812 28 QDSCDDACSICLEEFSESD--P--STVTSCKHEFHLQCVLE-WCQRSSQCPMCWQPIS 80 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~~~--~--~~vl~CgH~FC~~CI~~-Wl~~s~sCPvCR~~l~ 80 (350)
.......|.||-+.+.... . +..-.|+--.|..|+.- +...+..||-|+..+.
T Consensus 12 ~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 12 KNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred cccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 3334568999999863221 1 23357888899999854 3345778999988775
No 87
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=71.21 E-value=4 Score=34.84 Aligned_cols=46 Identities=24% Similarity=0.521 Sum_probs=32.1
Q ss_pred CCCccccccccccccCCCCeeeecCCccccHHHHHHHHh-----------cCCCCCCCCc
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQ-----------RSSQCPMCWQ 77 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~-----------~s~sCPvCR~ 77 (350)
+..++.|.||.+-= +-.-.-.|-..||..||..-+. ..-.||+|..
T Consensus 60 Dg~~d~C~vC~~GG---~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCS---SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCC---cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 55678999998752 2223347889999999996542 1236999964
No 88
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=70.87 E-value=1.4 Score=34.76 Aligned_cols=51 Identities=27% Similarity=0.577 Sum_probs=34.5
Q ss_pred cCCCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcC----CCCCCCCcCC
Q 018812 26 GIQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCWQPI 79 (350)
Q Consensus 26 ~~qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s----~sCPvCR~~l 79 (350)
...+..++.|.||... ++-+..-.|.-.||..|+..-+... -.||.|...-
T Consensus 19 ~~~d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 19 GTLDDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp CSSSSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred cccCCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 3456668899999865 2333334678899999996655432 3699997543
No 89
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=70.19 E-value=0.57 Score=41.87 Aligned_cols=48 Identities=25% Similarity=0.504 Sum_probs=32.0
Q ss_pred CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcC----CCCCCCCcCC
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCWQPI 79 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s----~sCPvCR~~l 79 (350)
+..++.|.||... ++-+..-.|...||..|+...+... -.||.|+..-
T Consensus 4 d~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4457889999854 1212223688999999987655432 3699997643
No 90
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=68.95 E-value=0.96 Score=32.86 Aligned_cols=47 Identities=21% Similarity=0.578 Sum_probs=31.3
Q ss_pred CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhc----CCCCCCCCcC
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQP 78 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~----s~sCPvCR~~ 78 (350)
+..+..|.||.+. ++-+.--.|...||..|+..-+.. .-.||.|...
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4457889999863 222333468889999998754432 2359999654
No 91
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=68.44 E-value=1.1 Score=33.81 Aligned_cols=47 Identities=23% Similarity=0.330 Sum_probs=29.5
Q ss_pred CccccccccccccCCCCeeeecCCccccHHHHHHHH---------hcCCCCCCCCcC
Q 018812 31 CDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC---------QRSSQCPMCWQP 78 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl---------~~s~sCPvCR~~ 78 (350)
....| ||........-+..-.|...||..|+.--. .....||.|+..
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 35667 898876321111223688999999984211 246789999653
No 92
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=66.16 E-value=1.8 Score=31.65 Aligned_cols=43 Identities=21% Similarity=0.508 Sum_probs=30.3
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMC 75 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvC 75 (350)
..|-.|...|.+.....-..|++.||.+|=.-.-+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4699999998432112346899999999954444555689988
No 93
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=66.11 E-value=1.4 Score=39.17 Aligned_cols=48 Identities=17% Similarity=0.369 Sum_probs=32.7
Q ss_pred cccccccccccCCCC---e-eeecCCccccHHHHHHH------Hh-----cCCCCCCCCcCCC
Q 018812 33 DACSICLEEFSESDP---S-TVTSCKHEFHLQCVLEW------CQ-----RSSQCPMCWQPIS 80 (350)
Q Consensus 33 ~~C~ICle~f~~~~~---~-~vl~CgH~FC~~CI~~W------l~-----~s~sCPvCR~~l~ 80 (350)
..|+||...+.+.+. . ..-.|...||..|+.-- +. ....||.|+..-.
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 479999999866442 1 22368899999998421 11 1578999977543
No 94
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=65.80 E-value=2.9 Score=31.66 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=31.1
Q ss_pred CCCccccccccccccCCCCe-eeecCCccccHHHHHHHHh-----cCCCCCCCCcCC
Q 018812 29 DSCDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQ-----RSSQCPMCWQPI 79 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~-~vl~CgH~FC~~CI~~Wl~-----~s~sCPvCR~~l 79 (350)
+.+...| ||...+.+.... ..-.|...||..|+.--.. ....||.|+...
T Consensus 9 ~~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 9 ALVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred cCCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 3345566 998877322222 2246889999999842221 346799997654
No 95
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=64.27 E-value=3 Score=28.74 Aligned_cols=44 Identities=25% Similarity=0.587 Sum_probs=27.2
Q ss_pred ccccccccccCCCCeeeecCCccccHHHHHHHHhc----CCCCCCCCc
Q 018812 34 ACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (350)
Q Consensus 34 ~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~----s~sCPvCR~ 77 (350)
.|.||...-...+-+.--.|...||..|+..=+.. .-.||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 58888865321122233478899999999643332 235999964
No 96
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=63.36 E-value=1.6 Score=34.68 Aligned_cols=45 Identities=20% Similarity=0.308 Sum_probs=27.9
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhc---CCCCCCCCc
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR---SSQCPMCWQ 77 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~---s~sCPvCR~ 77 (350)
...| ||......+.-+..-.|.-.||..|+..-... ...||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3567 89776533221222478899999998542221 347999964
No 97
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.88 E-value=3.5 Score=32.58 Aligned_cols=49 Identities=22% Similarity=0.460 Sum_probs=29.0
Q ss_pred CCCCCccccccccccccCCCCeeeec--CC-ccccHHHHHHHHhc----CCCCCCCCcCC
Q 018812 27 IQDSCDDACSICLEEFSESDPSTVTS--CK-HEFHLQCVLEWCQR----SSQCPMCWQPI 79 (350)
Q Consensus 27 ~qd~~d~~C~ICle~f~~~~~~~vl~--Cg-H~FC~~CI~~Wl~~----s~sCPvCR~~l 79 (350)
+...+...| ||..... +.-+..=. |. ..||..|+. +.. ...||.|+...
T Consensus 31 ~d~~e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 31 VDPNEPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCSCCCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred cCCCCCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 344455677 9998652 21111123 55 689999986 222 34799997643
No 98
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=62.87 E-value=1.3 Score=38.21 Aligned_cols=50 Identities=24% Similarity=0.410 Sum_probs=30.0
Q ss_pred CCCCCccccccccccccCCCC-eeeecCCccccHHHHHHHH-----hcCCCCCCCCc
Q 018812 27 IQDSCDDACSICLEEFSESDP-STVTSCKHEFHLQCVLEWC-----QRSSQCPMCWQ 77 (350)
Q Consensus 27 ~qd~~d~~C~ICle~f~~~~~-~~vl~CgH~FC~~CI~~Wl-----~~s~sCPvCR~ 77 (350)
..+.+...| ||......... +..-.|...||..|+.--. .....||.|+.
T Consensus 3 ~~~~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 3 LGSDTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp ----CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCCCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 345567789 99987632221 2223688999999984221 12457999975
No 99
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=61.63 E-value=1.4 Score=33.39 Aligned_cols=49 Identities=22% Similarity=0.449 Sum_probs=30.6
Q ss_pred CCCCCccccccccccccCCCCeee--e--cCCccccHHHHHHHHh---------cCCCCCCCCcC
Q 018812 27 IQDSCDDACSICLEEFSESDPSTV--T--SCKHEFHLQCVLEWCQ---------RSSQCPMCWQP 78 (350)
Q Consensus 27 ~qd~~d~~C~ICle~f~~~~~~~v--l--~CgH~FC~~CI~~Wl~---------~s~sCPvCR~~ 78 (350)
+...+...| ||-..... ...+ - .|...||..|+.--.. ....||.|+..
T Consensus 11 ~~~~~~~~C-iC~~~~~~--g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 11 FQPEIKVRC-VCGNSLET--DSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp SSCCCCCCC-SSCCCCCC--SCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred cCCCCCEEe-ECCCcCCC--CCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 344456678 89887422 2222 2 6889999999853211 24579999654
No 100
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=58.03 E-value=7.1 Score=28.69 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=23.0
Q ss_pred CCccccccccccccCCCCeee-e-cCCccccHHHHH
Q 018812 30 SCDDACSICLEEFSESDPSTV-T-SCKHEFHLQCVL 63 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~v-l-~CgH~FC~~CI~ 63 (350)
+....|.+|...+.+....+. - .|.-.||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 345689999999855433332 3 688999999973
No 101
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.81 E-value=0.68 Score=32.94 Aligned_cols=45 Identities=24% Similarity=0.586 Sum_probs=29.0
Q ss_pred CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhcC----CCCCCCC
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCW 76 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s----~sCPvCR 76 (350)
+..+..|.||.+. ++-+.--.|...||..|+..-+... -.||.|.
T Consensus 6 ~~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 3457889999874 2333344788899999987533321 2477664
No 102
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=56.28 E-value=4 Score=29.87 Aligned_cols=48 Identities=23% Similarity=0.645 Sum_probs=31.7
Q ss_pred CCCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhc----CCCCCCCCc
Q 018812 27 IQDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (350)
Q Consensus 27 ~qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~----s~sCPvCR~ 77 (350)
..+..++.|.||.+. ++-+.--.|...||..|+..-+.. .-.||.|..
T Consensus 3 ~~~~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 3 MAQKNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 345568899999864 233333478889999998753332 225888854
No 103
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=54.65 E-value=5.4 Score=29.84 Aligned_cols=47 Identities=23% Similarity=0.433 Sum_probs=28.3
Q ss_pred CCCCccccccccccccCCCCeee-ec--CC-ccccHHHHHHHHhc----CCCCCCCCcCC
Q 018812 28 QDSCDDACSICLEEFSESDPSTV-TS--CK-HEFHLQCVLEWCQR----SSQCPMCWQPI 79 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~~~~~~v-l~--Cg-H~FC~~CI~~Wl~~----s~sCPvCR~~l 79 (350)
...++..| ||..... ...+. =. |. ..||..|+. +.. .-.||.|+...
T Consensus 12 d~~~~~~C-~C~~~~~--g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 12 DPNEPTYC-LCHQVSY--GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CTTSCCCS-TTCCCSC--SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCCCEE-ECCCCCC--CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34456678 8988641 22111 13 65 689999996 322 34699997643
No 104
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=51.62 E-value=2.8 Score=37.00 Aligned_cols=44 Identities=27% Similarity=0.624 Sum_probs=29.9
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhc----CCCCCCCCcC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQP 78 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~----s~sCPvCR~~ 78 (350)
++.|.+|.+. ++-+..-.|...||..|+..-+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 5689999865 233334467889999998654432 2369999764
No 105
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=51.36 E-value=4.4 Score=28.26 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=27.2
Q ss_pred ccccccccccCCCCeee-e-cCCccccHHHHHHHH----hcCCCCCCCC
Q 018812 34 ACSICLEEFSESDPSTV-T-SCKHEFHLQCVLEWC----QRSSQCPMCW 76 (350)
Q Consensus 34 ~C~ICle~f~~~~~~~v-l-~CgH~FC~~CI~~Wl----~~s~sCPvCR 76 (350)
.|.||...+.++...+. - .|...||..|+.--. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 57799888744332222 2 578899999974221 2456899884
No 106
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=47.12 E-value=6.8 Score=28.27 Aligned_cols=49 Identities=24% Similarity=0.567 Sum_probs=30.4
Q ss_pred CCccccccccccccCC--CCeeeecCCccccHHHHHHHHh-------cCCCCCCCCcC
Q 018812 30 SCDDACSICLEEFSES--DPSTVTSCKHEFHLQCVLEWCQ-------RSSQCPMCWQP 78 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~--~~~~vl~CgH~FC~~CI~~Wl~-------~s~sCPvCR~~ 78 (350)
..+..|.||....... ..+.--.|.-.||..|+..-+. ..-.||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 4578999999764221 1122247888999999875321 22368888543
No 107
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=47.09 E-value=14 Score=30.93 Aligned_cols=46 Identities=24% Similarity=0.528 Sum_probs=30.1
Q ss_pred CCCccccccccccccCCCCeeeecCCccccHHHHHHHH------h-----cCCCCCCCCc
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWC------Q-----RSSQCPMCWQ 77 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl------~-----~s~sCPvCR~ 77 (350)
+..++.|.||.+-= +-+---.|-..||..||..-+ . ..=.|++|..
T Consensus 54 Dg~~~~C~vC~dGG---~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 54 DGMDEQCRWCAEGG---NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp TSCBSSCTTTCCCS---EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCCCcCeecCCCC---eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 45577899998652 111123678999999998742 1 1236999943
No 108
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=46.71 E-value=22 Score=28.43 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=21.4
Q ss_pred cccccccccccc------CCCCeeeecCCccccHHHHH
Q 018812 32 DDACSICLEEFS------ESDPSTVTSCKHEFHLQCVL 63 (350)
Q Consensus 32 d~~C~ICle~f~------~~~~~~vl~CgH~FC~~CI~ 63 (350)
...|.||+..-. .++-+.-..|+..||..||.
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 468999987521 11223345789999999995
No 109
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.37 E-value=1.2 Score=35.07 Aligned_cols=50 Identities=20% Similarity=0.430 Sum_probs=29.8
Q ss_pred CCCCccccccccccccCCCCeeeecCCccccHHHHHHHHhc----CCCCCCCCc
Q 018812 28 QDSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~----s~sCPvCR~ 77 (350)
+..++..|.||...-....-+..-.|...||..|+..-+.. .-.||.|..
T Consensus 12 ~~~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 12 QFIDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred hccCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 44456789999876321112223368889999998643322 224888843
No 110
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=44.02 E-value=12 Score=28.54 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=25.3
Q ss_pred CCCccccccccccccCCC-CeeeecCCccccHHHHHH
Q 018812 29 DSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLE 64 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~-~~~vl~CgH~FC~~CI~~ 64 (350)
|.+-..|.+|...|.... .-.--.||++||..|...
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 334568999999985322 234468999999999643
No 111
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=43.79 E-value=8.4 Score=30.86 Aligned_cols=46 Identities=22% Similarity=0.511 Sum_probs=30.8
Q ss_pred cccccccccccCCCCeeee--cCCccccHHHHHHHH---h-------cCCCCCCCCcC
Q 018812 33 DACSICLEEFSESDPSTVT--SCKHEFHLQCVLEWC---Q-------RSSQCPMCWQP 78 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl--~CgH~FC~~CI~~Wl---~-------~s~sCPvCR~~ 78 (350)
..|.||...+.+....+.- .|...||..|+.--. . ....||.|+..
T Consensus 4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence 5799999998553333332 578999999984211 0 34579999654
No 112
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=43.35 E-value=2.1 Score=31.87 Aligned_cols=48 Identities=21% Similarity=0.455 Sum_probs=29.0
Q ss_pred CCCCccccccccccccCCCCe-eeecCCccccHHHHHHHHh---cCCCCCCCCc
Q 018812 28 QDSCDDACSICLEEFSESDPS-TVTSCKHEFHLQCVLEWCQ---RSSQCPMCWQ 77 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~~~~~-~vl~CgH~FC~~CI~~Wl~---~s~sCPvCR~ 77 (350)
++.+...| ||..... +... ..-.|...||..|+.--.. ....||.|+.
T Consensus 15 ~~~~~~~C-iC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 15 YFQGLVTC-FCMKPFA-GRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTTCCCS-TTCCCCT-TCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCCceEe-ECCCcCC-CCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 44456678 9988763 1222 2236889999999853221 2346887753
No 113
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=42.75 E-value=13 Score=27.78 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=25.3
Q ss_pred CCCccccccccccccCCCCeeeecC-CccccHHHHHHHH
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSC-KHEFHLQCVLEWC 66 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~C-gH~FC~~CI~~Wl 66 (350)
+++..-|.||.+.- .++.+.| +-.||..|..+.-
T Consensus 5 ~ee~pWC~ICneDA----tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNEDA----TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSCC----CEEETTTTSEEECSSHHHHHT
T ss_pred CcCCCeeEEeCCCC----eEEecCCCCceehHHHHHHHc
Confidence 44456799999884 2567788 7899999977653
No 114
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=42.25 E-value=11 Score=31.01 Aligned_cols=32 Identities=22% Similarity=0.453 Sum_probs=23.3
Q ss_pred ccccccccccccCCC-CeeeecCCccccHHHHH
Q 018812 32 DDACSICLEEFSESD-PSTVTSCKHEFHLQCVL 63 (350)
Q Consensus 32 d~~C~ICle~f~~~~-~~~vl~CgH~FC~~CI~ 63 (350)
-..|.+|...|.... ....-.||++||..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 357999999985322 23446899999999953
No 115
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=41.08 E-value=13 Score=28.89 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=24.4
Q ss_pred ccccccccccccCCC-CeeeecCCccccHHHHHHH
Q 018812 32 DDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEW 65 (350)
Q Consensus 32 d~~C~ICle~f~~~~-~~~vl~CgH~FC~~CI~~W 65 (350)
-..|.+|...|.... ......||++||..|...+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 457999999885322 2344689999999996543
No 116
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=40.20 E-value=13 Score=28.29 Aligned_cols=36 Identities=31% Similarity=0.535 Sum_probs=25.0
Q ss_pred CCCccccccccccccCCC-CeeeecCCccccHHHHHH
Q 018812 29 DSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCVLE 64 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~-~~~vl~CgH~FC~~CI~~ 64 (350)
|.+-..|.+|...|.... .-.--.||.+||..|...
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 334457999999985322 224468999999999643
No 117
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=40.13 E-value=10 Score=26.92 Aligned_cols=46 Identities=24% Similarity=0.542 Sum_probs=29.8
Q ss_pred CCCccccccccccccCCCCeeeecCCccccHHHHHHHHhc----CCCCCCCCc
Q 018812 29 DSCDDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR----SSQCPMCWQ 77 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~----s~sCPvCR~ 77 (350)
+..+..|.||... ++-+.--.|...||..|+..-+.. .-.||.|..
T Consensus 2 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 2 MIHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 3457899999874 233334478899999998753332 124777743
No 118
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=39.61 E-value=26 Score=26.02 Aligned_cols=49 Identities=24% Similarity=0.373 Sum_probs=28.7
Q ss_pred CCCCcccccccccccc-CCCCe-eeecCCccccHHHHHHHHh--cCCCCCCCC
Q 018812 28 QDSCDDACSICLEEFS-ESDPS-TVTSCKHEFHLQCVLEWCQ--RSSQCPMCW 76 (350)
Q Consensus 28 qd~~d~~C~ICle~f~-~~~~~-~vl~CgH~FC~~CI~~Wl~--~s~sCPvCR 76 (350)
....++.|.||.+.-. +.+.. .--.|.-.||..|+..-.. ..-.||.|.
T Consensus 12 ~~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~ 64 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCL 64 (71)
T ss_dssp CCCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCc
Confidence 3455789999987531 11122 2237888999999864221 122476663
No 119
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.36 E-value=14 Score=28.10 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=23.6
Q ss_pred CCCccccccccccccCCC-CeeeecCCccccHHHH
Q 018812 29 DSCDDACSICLEEFSESD-PSTVTSCKHEFHLQCV 62 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~-~~~vl~CgH~FC~~CI 62 (350)
|.+-..|.+|...|.... .-.--.||.+||..|.
T Consensus 11 d~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 11 TNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCCCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 333458999999984322 2344689999999884
No 120
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=39.24 E-value=13 Score=31.95 Aligned_cols=47 Identities=15% Similarity=0.320 Sum_probs=30.0
Q ss_pred CCccccccccccccCC--CCeeeecCCccccHHHHHHHHhcC--CCCCCCCc
Q 018812 30 SCDDACSICLEEFSES--DPSTVTSCKHEFHLQCVLEWCQRS--SQCPMCWQ 77 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~--~~~~vl~CgH~FC~~CI~~Wl~~s--~sCPvCR~ 77 (350)
..+..|.+|...|.-- .......|.|.+|..|- .|.... -.|-+|.+
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~~~W~C~vC~k 116 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEEQGWLCDPCHL 116 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSSSSCEEHHHHH
T ss_pred CCCccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCCCcEeeHHHHH
Confidence 3578999999987422 23455689999999996 233221 13666644
No 121
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=38.95 E-value=6.4 Score=38.11 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=0.0
Q ss_pred ccccccccccccCCC-CeeeecCCccccHHHHHHHHh-------cCCCCCCCCcCC
Q 018812 32 DDACSICLEEFSESD-PSTVTSCKHEFHLQCVLEWCQ-------RSSQCPMCWQPI 79 (350)
Q Consensus 32 d~~C~ICle~f~~~~-~~~vl~CgH~FC~~CI~~Wl~-------~s~sCPvCR~~l 79 (350)
...|.+|...|.... ......||+.||..|...+.. ....|-.|...+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 467999999884321 234468999999999876542 124577775544
No 122
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=38.41 E-value=9.4 Score=32.06 Aligned_cols=34 Identities=18% Similarity=0.468 Sum_probs=23.4
Q ss_pred CCcccccccccccc-CCC-CeeeecCCccccHHHHH
Q 018812 30 SCDDACSICLEEFS-ESD-PSTVTSCKHEFHLQCVL 63 (350)
Q Consensus 30 ~~d~~C~ICle~f~-~~~-~~~vl~CgH~FC~~CI~ 63 (350)
..+..|.+|...|. ... ......|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 35789999999983 212 22446788988888743
No 123
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=36.70 E-value=31 Score=33.98 Aligned_cols=48 Identities=21% Similarity=0.458 Sum_probs=32.9
Q ss_pred CCCCccccccccccccCCCCeeee--cCCccccHHHHHHHHhc----------CCCCCCCCcC
Q 018812 28 QDSCDDACSICLEEFSESDPSTVT--SCKHEFHLQCVLEWCQR----------SSQCPMCWQP 78 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~~~~~~vl--~CgH~FC~~CI~~Wl~~----------s~sCPvCR~~ 78 (350)
.|-.+..|.||-+-- +-...- .|...||..||..++-. .=.|=+|.-.
T Consensus 89 ~DG~~~yCr~C~~Gg---~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 89 DDGYQSYCSICCSGE---TLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSSSBCSCTTTCCCS---SCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCCCcccceEcCCCC---eEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 344577899998752 222333 78899999999998732 2369888543
No 124
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=36.00 E-value=15 Score=29.77 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=29.7
Q ss_pred CCCCccccccccccccCCCCeeee---cCCccccHHHHHHHHhcC----CCCCCCCcCCCC
Q 018812 28 QDSCDDACSICLEEFSESDPSTVT---SCKHEFHLQCVLEWCQRS----SQCPMCWQPISL 81 (350)
Q Consensus 28 qd~~d~~C~ICle~f~~~~~~~vl---~CgH~FC~~CI~~Wl~~s----~sCPvCR~~l~~ 81 (350)
+...++.|.||.+. + .+..= .|-..||..|+. +... -.||.|...+..
T Consensus 11 ~~~~~~~C~~C~~~---G-~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C~ 65 (107)
T 4gne_A 11 KQMHEDYCFQCGDG---G-ELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDECS 65 (107)
T ss_dssp CCSSCSSCTTTCCC---S-EEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTTC
T ss_pred cCCCCCCCCcCCCC---C-cEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcCC
Confidence 44567899999843 1 12221 377899999986 4322 248877655443
No 125
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=35.24 E-value=12 Score=33.37 Aligned_cols=32 Identities=25% Similarity=0.539 Sum_probs=23.6
Q ss_pred ccccccccccccCCC-CeeeecCCccccHHHHH
Q 018812 32 DDACSICLEEFSESD-PSTVTSCKHEFHLQCVL 63 (350)
Q Consensus 32 d~~C~ICle~f~~~~-~~~vl~CgH~FC~~CI~ 63 (350)
+..|.+|...|.... ....-.||+.||..|..
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 468999999885322 23456899999998854
No 126
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=34.94 E-value=4.6 Score=29.28 Aligned_cols=36 Identities=22% Similarity=0.557 Sum_probs=24.2
Q ss_pred cccccccccccCCC---Ceeeec--CCccccHHHHHHHHhc
Q 018812 33 DACSICLEEFSESD---PSTVTS--CKHEFHLQCVLEWCQR 68 (350)
Q Consensus 33 ~~C~ICle~f~~~~---~~~vl~--CgH~FC~~CI~~Wl~~ 68 (350)
..||-|.-.+...+ .++... |++.||+.|...|...
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 47888887774322 122233 8899999998888754
No 127
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=34.48 E-value=27 Score=26.98 Aligned_cols=52 Identities=23% Similarity=0.415 Sum_probs=31.2
Q ss_pred CCCccccccccccccCCCCeee---ecCCccccHHHHHHHHh--cCCCCCCCCcCCCC
Q 018812 29 DSCDDACSICLEEFSESDPSTV---TSCKHEFHLQCVLEWCQ--RSSQCPMCWQPISL 81 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~v---l~CgH~FC~~CI~~Wl~--~s~sCPvCR~~l~~ 81 (350)
.+++..|.||...-.. +.-.+ -.|.-.||..|+..-.. ..-.||.|......
T Consensus 22 ~~~~~~C~vC~~~~s~-~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 22 IDEDAVCSICMDGESQ-NSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCCSSCCSSSSC-SEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCCcCCcCCCCCCC-CCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 3457899999875311 11122 36778999999864321 12358888654443
No 128
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=34.39 E-value=18 Score=26.84 Aligned_cols=32 Identities=31% Similarity=0.515 Sum_probs=23.0
Q ss_pred ccccccccccccCCC-CeeeecCCccccHHHHH
Q 018812 32 DDACSICLEEFSESD-PSTVTSCKHEFHLQCVL 63 (350)
Q Consensus 32 d~~C~ICle~f~~~~-~~~vl~CgH~FC~~CI~ 63 (350)
+..|.+|...|.... .-.--.||.+||..|..
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccC
Confidence 358999999885321 22346899999999953
No 129
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=34.28 E-value=23 Score=28.27 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=33.9
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd 83 (350)
..|..|-..|.+........=+..||..|..+.+.....|-.|.+.|....
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNSGAGGSGGHMGSGGD 83 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCCCSSSCSSCCSCCEE
T ss_pred CCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCCCccccCCCCcCchh
Confidence 468888777732111233456778999998776655458999988887644
No 130
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=33.61 E-value=15 Score=33.18 Aligned_cols=33 Identities=18% Similarity=0.462 Sum_probs=24.2
Q ss_pred ccccccccccccCCC-CeeeecCCccccHHHHHH
Q 018812 32 DDACSICLEEFSESD-PSTVTSCKHEFHLQCVLE 64 (350)
Q Consensus 32 d~~C~ICle~f~~~~-~~~vl~CgH~FC~~CI~~ 64 (350)
+..|.+|...|.... ......||+.||..|...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 468999999885322 234568999999999643
No 131
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=32.78 E-value=9.5 Score=30.63 Aligned_cols=44 Identities=25% Similarity=0.543 Sum_probs=26.6
Q ss_pred ccccccccccC-CCCeeeecCCccccHHHHHHHHhcC----CCCCCCCc
Q 018812 34 ACSICLEEFSE-SDPSTVTSCKHEFHLQCVLEWCQRS----SQCPMCWQ 77 (350)
Q Consensus 34 ~C~ICle~f~~-~~~~~vl~CgH~FC~~CI~~Wl~~s----~sCPvCR~ 77 (350)
.|.||.+.-.+ ++-+.--.|...||..|+..-+... -.||.|+.
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57788764211 1112223688999999986544332 36999964
No 132
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=32.69 E-value=2.8 Score=34.81 Aligned_cols=49 Identities=20% Similarity=0.556 Sum_probs=29.7
Q ss_pred CCCccccccccccccCC-CCeeeecCCccccHHHHHHHHhcCCCCCCCCc
Q 018812 29 DSCDDACSICLEEFSES-DPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQ 77 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~-~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~ 77 (350)
+.....|.+|...|... .....-.||.+||..|..........|-.|..
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~ 65 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR 65 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence 33456899999988432 12344689999999997655444556777744
No 133
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=31.54 E-value=22 Score=27.50 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=23.6
Q ss_pred ccccccccccccCCCC-eeeecCCccccHHHHHH
Q 018812 32 DDACSICLEEFSESDP-STVTSCKHEFHLQCVLE 64 (350)
Q Consensus 32 d~~C~ICle~f~~~~~-~~vl~CgH~FC~~CI~~ 64 (350)
...|.+|...|..... -..-.||.+||..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 4589999999853221 23468999999999643
No 134
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.09 E-value=27 Score=25.19 Aligned_cols=41 Identities=20% Similarity=0.489 Sum_probs=29.7
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
...|..|-+.+.... .+..-+..||..| ..|-.|...|...
T Consensus 9 ~~~C~~C~~~I~~~~--~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 49 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAE--KVSSLGKDWHKFC--------LKCERCSKTLTPG 49 (76)
T ss_dssp CCBCTTTCCBCCTTT--EEEETTEEEETTT--------CBCSSSCCBCCTT
T ss_pred CCCCcCCCCEeECCe--EEEECCeEeeCCC--------CCCCCCCCccCCC
Confidence 358999999885332 3445678888888 5799998887653
No 135
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=30.95 E-value=6.2 Score=29.35 Aligned_cols=16 Identities=13% Similarity=-0.041 Sum_probs=6.6
Q ss_pred ccccccccchhHHHHH
Q 018812 277 SENRSENVGITSVSRL 292 (350)
Q Consensus 277 ~~~~re~agia~v~rm 292 (350)
+.-.|.|||||+|.-|
T Consensus 45 k~~kr~~aGiA~a~A~ 60 (64)
T 3lt7_A 45 KLEKRLLKLLASSAAL 60 (64)
T ss_dssp HHHHHHHHHC------
T ss_pred HHHHHHhhhHHHHHHH
Confidence 3334559999999765
No 136
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.51 E-value=6.5 Score=29.87 Aligned_cols=45 Identities=18% Similarity=0.461 Sum_probs=26.6
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhc-----CCCCCCCCc
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----SSQCPMCWQ 77 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-----s~sCPvCR~ 77 (350)
..|.||...-..++-+.--.|...||..|+..-+.. .-.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 378888754211111222378899999998753332 235888853
No 137
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.68 E-value=33 Score=25.68 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=30.0
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
...|..|-+.+.. ..+..-+..||..| ..|-.|...|...
T Consensus 25 ~~~C~~C~~~I~~---~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 25 MPLCDKCGSGIVG---AVVKARDKYRHPEC--------FVCADCNLNLKQK 64 (89)
T ss_dssp CCBCTTTCCBCCS---CCEESSSCEECTTT--------CCCSSSCCCTTTS
T ss_pred CCCcccCCCEecc---cEEEECCceECccC--------CEecCCCCCCCCC
Confidence 4689999998853 23445678899888 5799998888654
No 138
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=29.37 E-value=13 Score=30.28 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=19.3
Q ss_pred CeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 47 PSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 47 ~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
++....||+.|. .-+..-..||.|+.....
T Consensus 67 p~~C~~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 67 PAQCRKCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp CCBBTTTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred CcChhhCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 356678999992 111234679999876543
No 139
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=28.81 E-value=42 Score=26.72 Aligned_cols=49 Identities=14% Similarity=0.231 Sum_probs=33.0
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
..|..|...|..........=+..||..|..+.+.....|..|.+.|..
T Consensus 30 F~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 30 LSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQDGLCASCDKRIRA 78 (131)
T ss_dssp CBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCCEECTTTCCEECT
T ss_pred cccCcCCCccccCCCeEEEECCEEeecCchhhhCCCccChhhcCCccCc
Confidence 5788888877421223344567789999987765433479999888864
No 140
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.59 E-value=31 Score=25.83 Aligned_cols=40 Identities=13% Similarity=0.345 Sum_probs=29.8
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
...|..|-..+.. ..+..-+..||..| ..|-.|...|...
T Consensus 25 ~~~C~~C~~~I~~---~~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 64 (90)
T 2dar_A 25 TPMCAHCNQVIRG---PFLVALGKSWHPEE--------FNCAHCKNTMAYI 64 (90)
T ss_dssp CCBBSSSCCBCCS---CEEEETTEEECTTT--------CBCSSSCCBCSSS
T ss_pred CCCCccCCCEecc---eEEEECCccccccC--------CccCCCCCCCCCC
Confidence 4689999998832 24446688899888 5799998888653
No 141
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=28.49 E-value=27 Score=30.33 Aligned_cols=45 Identities=24% Similarity=0.481 Sum_probs=30.2
Q ss_pred CCCccccccccccccCCCCeee-e--cCCccccHHHHHHHHhcC----------CCCCCCCc
Q 018812 29 DSCDDACSICLEEFSESDPSTV-T--SCKHEFHLQCVLEWCQRS----------SQCPMCWQ 77 (350)
Q Consensus 29 d~~d~~C~ICle~f~~~~~~~v-l--~CgH~FC~~CI~~Wl~~s----------~sCPvCR~ 77 (350)
|-.+..|.||-+-- .+.. - .|...||..||..++-.. =.|=+|.-
T Consensus 76 DG~~~yC~wC~~Gg----~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 76 DGYQSYCTICCGGR----EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp TSSBSSCTTTSCCS----EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CCCcceeeEecCCC----eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 44567899998642 1222 1 578899999999887431 25888853
No 142
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=28.05 E-value=4.4 Score=30.81 Aligned_cols=19 Identities=21% Similarity=0.719 Sum_probs=15.5
Q ss_pred cCCccccHHHHHHHHhcCCCC
Q 018812 52 SCKHEFHLQCVLEWCQRSSQC 72 (350)
Q Consensus 52 ~CgH~FC~~CI~~Wl~~s~sC 72 (350)
.|++.||..|...|-. ..|
T Consensus 55 ~C~~~FC~~C~~~wH~--~~C 73 (80)
T 2jmo_A 55 GCGFAFCRECKEAYHE--GEC 73 (80)
T ss_dssp CCSCCEETTTTEECCS--SCS
T ss_pred CCCCeeccccCccccC--Ccc
Confidence 6899999999988865 445
No 143
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=27.89 E-value=6.9 Score=37.35 Aligned_cols=46 Identities=15% Similarity=0.308 Sum_probs=32.3
Q ss_pred CCccccccccccccCCCCeeee----cCC--ccccHHHHHHHHhcCCCCCCCCcC
Q 018812 30 SCDDACSICLEEFSESDPSTVT----SCK--HEFHLQCVLEWCQRSSQCPMCWQP 78 (350)
Q Consensus 30 ~~d~~C~ICle~f~~~~~~~vl----~Cg--H~FC~~CI~~Wl~~s~sCPvCR~~ 78 (350)
+....||||-..... ..+. .=| +.+|..|-.+|-.....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~---s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMA---GMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEE---EEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCce---eEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 556899999876422 1111 122 678888999998888899999664
No 144
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=26.05 E-value=16 Score=28.13 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=29.5
Q ss_pred CccccccccccccCCCCeee--ecCCccccHHHHHHHHh--------cCCCCCCCCcC
Q 018812 31 CDDACSICLEEFSESDPSTV--TSCKHEFHLQCVLEWCQ--------RSSQCPMCWQP 78 (350)
Q Consensus 31 ~d~~C~ICle~f~~~~~~~v--l~CgH~FC~~CI~~Wl~--------~s~sCPvCR~~ 78 (350)
.+..|.||...-.......+ -.|...||..|+..-+. ..-.|+.|...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 35689999876321111222 36889999999875442 12368888543
No 145
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.66 E-value=37 Score=25.12 Aligned_cols=42 Identities=24% Similarity=0.491 Sum_probs=29.6
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd 83 (350)
...|..|-..+...+. +..-+..||..| ..|-.|...|....
T Consensus 15 ~~~C~~C~~~I~~~e~--v~a~~~~wH~~C--------F~C~~C~~~L~~~~ 56 (82)
T 2co8_A 15 GDLCALCGEHLYVLER--LCVNGHFFHRSC--------FRCHTCEATLWPGG 56 (82)
T ss_dssp SCBCSSSCCBCCTTTB--CCBTTBCCBTTT--------CBCSSSCCBCCTTS
T ss_pred CCCCcccCCCcccceE--EEECCCeeCCCc--------CEEcCCCCCcCCCc
Confidence 4589999998743222 334577888888 57889988877554
No 146
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=25.21 E-value=28 Score=28.13 Aligned_cols=39 Identities=15% Similarity=0.427 Sum_probs=29.2
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~ 80 (350)
...|.-|-..+.. ...+..-+..||..| ..|-.|...|.
T Consensus 61 ~~~C~~C~~~I~~--~~~v~a~~~~wH~~C--------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIAD--RFLLYAMDSYWHSRC--------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCS--SSEEEETTEEEETTT--------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCC--cEEEEeCCcEEcccc--------cCcCcCCCccc
Confidence 3589999998743 233456788899888 57999988875
No 147
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=24.80 E-value=28 Score=27.89 Aligned_cols=33 Identities=18% Similarity=0.404 Sum_probs=21.7
Q ss_pred ccccccccccc----CC---CCeeeecCCccccHHHHHHH
Q 018812 33 DACSICLEEFS----ES---DPSTVTSCKHEFHLQCVLEW 65 (350)
Q Consensus 33 ~~C~ICle~f~----~~---~~~~vl~CgH~FC~~CI~~W 65 (350)
+.|.||+..-. .+ +-+.-..|+..||..|+..+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 57999987541 11 22333578999999998643
No 148
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=24.37 E-value=12 Score=34.39 Aligned_cols=45 Identities=22% Similarity=0.487 Sum_probs=24.3
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhc-----CCCCCCCCc
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQR-----SSQCPMCWQ 77 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~-----s~sCPvCR~ 77 (350)
..|.||...-..+.-+..-.|...||..|+..-+.. .-.||.|..
T Consensus 175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 357788653211122233378899999999754432 225999954
No 149
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.27 E-value=49 Score=23.31 Aligned_cols=42 Identities=24% Similarity=0.529 Sum_probs=28.8
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
...|..|-..+...+ ..+..-+..||..| ..|-.|...|...
T Consensus 5 ~~~C~~C~~~I~~~~-~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1wyh_A 5 SSGCSACGETVMPGS-RKLEYGGQTWHEHC--------FLCSGCEQPLGSR 46 (72)
T ss_dssp CCBCSSSCCBCCSSS-CEECSTTCCEETTT--------CBCTTTCCBTTTS
T ss_pred CCCCccCCCccccCc-cEEEECccccCccc--------CeECCCCCcCCCC
Confidence 357899988874322 23445677888877 5788888877654
No 150
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.17 E-value=29 Score=25.34 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=28.4
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~ 80 (350)
...|..|-..+.. ..+..-+..||..| ..|-.|...|.
T Consensus 15 ~~~C~~C~~~I~~---~~~~a~~~~~H~~C--------F~C~~C~~~L~ 52 (79)
T 1x62_A 15 LPMCDKCGTGIVG---VFVKLRDRHRHPEC--------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCSSSCCCCCS---SCEECSSCEECTTT--------TSCSSSCCCHH
T ss_pred CCccccCCCCccC---cEEEECcceeCcCc--------CeeCCCCCCCC
Confidence 4689999998854 24456678899888 47889988764
No 151
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=23.96 E-value=79 Score=24.88 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=32.6
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
..|..|...|.. ......=+..||..|.... ....|..|.++|..
T Consensus 31 F~C~~C~~~L~~--~~f~~~~g~~yC~~cy~~~--~~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 31 FCCFDCDSILAG--EIYVMVNDKPVCKPCYVKN--HAVVCQGCHNAIDP 75 (126)
T ss_dssp SBCTTTCCBCTT--SEEEEETTEEEEHHHHHHH--SCCBCTTTCSBCCT
T ss_pred CCcCCCCCCCCc--CEEEeECCEEechHHhCcC--cCccCcccCCcCCc
Confidence 578888888742 2344466788999997553 35689999998875
No 152
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.91 E-value=40 Score=23.80 Aligned_cols=40 Identities=18% Similarity=0.504 Sum_probs=27.8
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd 83 (350)
..|..|-..+.. ..+..-+..||..| ..|-.|...|....
T Consensus 6 ~~C~~C~~~I~~---~~~~a~~~~~H~~C--------F~C~~C~~~L~~~~ 45 (70)
T 2d8x_A 6 SGCHQCGEFIIG---RVIKAMNNSWHPEC--------FRCDLCQEVLADIG 45 (70)
T ss_dssp SBCSSSCCBCCS---CCEEETTEEECTTT--------SBCSSSCCBCSSSC
T ss_pred CcCccCCCEecc---eEEEECcccccccC--------CEeCCCCCcCCCCc
Confidence 578889888743 23445577888877 47888888776543
No 153
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.89 E-value=53 Score=23.03 Aligned_cols=38 Identities=24% Similarity=0.564 Sum_probs=26.9
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISL 81 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~ 81 (350)
..|..|-..+.. ..+..-+..||..| ..|-.|...|..
T Consensus 6 ~~C~~C~~~I~~---~~~~a~~~~~H~~C--------F~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITT---GGVTYREQPWHKEC--------FVCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCS---SEEESSSSEEETTT--------SBCSSSCCBCTT
T ss_pred CCCcccCCeecc---ceEEECccccCCCC--------CccCCCCCcCCc
Confidence 578888888743 23445677888877 468888887754
No 154
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.87 E-value=54 Score=23.19 Aligned_cols=42 Identities=17% Similarity=0.451 Sum_probs=28.3
Q ss_pred cccccccccccC-CCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 33 DACSICLEEFSE-SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 33 ~~C~ICle~f~~-~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
..|..|-..+.. .+...+..-+..||..| ..|-.|...|...
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C--------F~C~~C~~~L~~~ 48 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDC--------FNCKKCSLSLVGR 48 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTT--------CBCSSSCCBCTTS
T ss_pred CCCcCCCccccCCCCcceEEECCcccCccc--------CEeccCCCcCCCC
Confidence 579999888743 01223344678888888 5788898877643
No 155
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=22.56 E-value=9.4 Score=28.33 Aligned_cols=26 Identities=27% Similarity=0.644 Sum_probs=18.3
Q ss_pred cCCccccHHHHHHHHhc-----CCCCCCCCc
Q 018812 52 SCKHEFHLQCVLEWCQR-----SSQCPMCWQ 77 (350)
Q Consensus 52 ~CgH~FC~~CI~~Wl~~-----s~sCPvCR~ 77 (350)
.|...||..|+..-+.. .-.||.|..
T Consensus 38 ~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 38 ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 67899999998744332 236888864
No 156
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=22.14 E-value=1.7e+02 Score=22.67 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=18.0
Q ss_pred cCCccccHHHHH------HHHhc-----CCCCCCCCcC
Q 018812 52 SCKHEFHLQCVL------EWCQR-----SSQCPMCWQP 78 (350)
Q Consensus 52 ~CgH~FC~~CI~------~Wl~~-----s~sCPvCR~~ 78 (350)
.|+.+||..|+. ..+.. ...||.|...
T Consensus 7 ~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~ 44 (140)
T 2ku7_A 7 KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 44 (140)
T ss_dssp CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTT
T ss_pred cCCCccCCcccccCHHHHHHHhhccccceeeCcccccc
Confidence 588999999951 12222 3679999654
No 157
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.01 E-value=81 Score=23.49 Aligned_cols=41 Identities=22% Similarity=0.610 Sum_probs=29.3
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
...|..|-..+...+ .+..-+..||..| ..|-.|...|...
T Consensus 15 ~~~C~~C~~~I~~~~--~v~a~~~~~H~~C--------F~C~~C~~~L~~~ 55 (91)
T 2d8y_A 15 RETCVECQKTVYPME--RLLANQQVFHISC--------FRCSYCNNKLSLG 55 (91)
T ss_dssp SCBCTTTCCBCCTTS--EEECSSSEEETTT--------CBCTTTCCBCCTT
T ss_pred CCcCccCCCccCCce--eEEECCCEECCCC--------CeeCCCCCCCCCC
Confidence 468999999884422 3456778888888 5688888877654
No 158
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.96 E-value=55 Score=23.01 Aligned_cols=41 Identities=24% Similarity=0.510 Sum_probs=28.4
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
..|..|-..+...+. .+..-+..||..| ..|-.|...|...
T Consensus 6 ~~C~~C~~~I~~~~~-~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 6 SGCQECKKTIMPGTR-KMEYKGSSWHETC--------FICHRCQQPIGTK 46 (72)
T ss_dssp CCBSSSCCCCCSSSC-EEEETTEEEETTT--------TCCSSSCCCCCSS
T ss_pred CCCccCCCcccCCce-EEEECcCeecccC--------CcccccCCccCCC
Confidence 479999988754222 3444677888877 5788898877654
No 159
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.91 E-value=63 Score=23.18 Aligned_cols=43 Identities=19% Similarity=0.448 Sum_probs=29.6
Q ss_pred ccccccccccccC-CCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 32 DDACSICLEEFSE-SDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 32 d~~C~ICle~f~~-~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
...|..|-..+.. ++...+..-+..||..| ..|-.|...|...
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C--------F~C~~C~~~L~~~ 48 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSEC--------FNCGKCSVSLVGK 48 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGG--------CBCTTTCCBCSSS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCccc--------CChhhCCCcCCCC
Confidence 3579999998743 01233445678899888 5788998887643
No 160
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.66 E-value=48 Score=24.12 Aligned_cols=40 Identities=23% Similarity=0.542 Sum_probs=28.9
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCCC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLKD 83 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~kd 83 (350)
..|..|-..+.. ..+..-+..||..| ..|-.|.+.|...+
T Consensus 16 ~~C~~C~~~I~~---~~v~a~~~~wH~~C--------F~C~~C~~~L~~~~ 55 (81)
T 1v6g_A 16 TRCFSCDQFIEG---EVVSALGKTYHPDC--------FVCAVCRLPFPPGD 55 (81)
T ss_dssp CBCTTTCCBCCS---CCEEETTEEECTTT--------SSCSSSCCCCCSSS
T ss_pred CcCccccCEecc---ceEEECCceeCccC--------CccccCCCCCCCCC
Confidence 479999988742 23445678888888 57899988886543
No 161
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=21.15 E-value=8.1 Score=31.10 Aligned_cols=41 Identities=22% Similarity=0.470 Sum_probs=26.3
Q ss_pred ccccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCC
Q 018812 32 DDACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPIS 80 (350)
Q Consensus 32 d~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~ 80 (350)
+..||+|...+.. .=++.+|..|-.. +.....||-|.++|.
T Consensus 32 ~~~CP~Cq~eL~~-------~g~~~hC~~C~~~-f~~~a~CPdC~q~Le 72 (101)
T 2jne_A 32 ELHCPQCQHVLDQ-------DNGHARCRSCGEF-IEMKALCPDCHQPLQ 72 (101)
T ss_dssp CCBCSSSCSBEEE-------ETTEEEETTTCCE-EEEEEECTTTCSBCE
T ss_pred cccCccCCCccee-------cCCEEECccccch-hhccccCcchhhHHH
Confidence 5799999988732 1234457777332 223457999998875
No 162
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=20.72 E-value=38 Score=27.31 Aligned_cols=13 Identities=23% Similarity=0.797 Sum_probs=11.2
Q ss_pred cccHHHHHHHHhc
Q 018812 56 EFHLQCVLEWCQR 68 (350)
Q Consensus 56 ~FC~~CI~~Wl~~ 68 (350)
-||.-|+..|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999853
No 163
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=20.49 E-value=39 Score=27.22 Aligned_cols=12 Identities=25% Similarity=0.886 Sum_probs=10.8
Q ss_pred cccHHHHHHHHh
Q 018812 56 EFHLQCVLEWCQ 67 (350)
Q Consensus 56 ~FC~~CI~~Wl~ 67 (350)
-||.-|+..|+.
T Consensus 41 GFCRNCLskWy~ 52 (104)
T 3fyb_A 41 DFCRNCLAKWLM 52 (104)
T ss_dssp SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 499999999986
No 164
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=20.38 E-value=54 Score=22.77 Aligned_cols=39 Identities=18% Similarity=0.467 Sum_probs=27.8
Q ss_pred cccccccccccCCCCeeeecCCccccHHHHHHHHhcCCCCCCCCcCCCCC
Q 018812 33 DACSICLEEFSESDPSTVTSCKHEFHLQCVLEWCQRSSQCPMCWQPISLK 82 (350)
Q Consensus 33 ~~C~ICle~f~~~~~~~vl~CgH~FC~~CI~~Wl~~s~sCPvCR~~l~~k 82 (350)
..|..|-..+. . ..+..-+..||..| ..|-.|...|...
T Consensus 6 ~~C~~C~~~I~--~-~~~~a~~~~~H~~C--------F~C~~C~~~L~~~ 44 (66)
T 1nyp_A 6 PICGACRRPIE--G-RVVNAMGKQWHVEH--------FVCAKCEKPFLGH 44 (66)
T ss_dssp CEETTTTEECC--S-CEECCTTSBEETTT--------CBCTTTCCBCSSS
T ss_pred CCCcccCCEec--c-eEEEECccccccCc--------CEECCCCCCCCCC
Confidence 57899988874 2 24445677888877 5788898877643
No 165
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=20.09 E-value=14 Score=29.13 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=25.1
Q ss_pred CCCCCCCcccccc-ccchhHHHHHHHHhcCCC
Q 018812 270 ASMPGTGSENRSE-NVGITSVSRLMEQLGTGE 300 (350)
Q Consensus 270 ~~~~~~~~~~~re-~agia~v~rm~e~l~~~~ 300 (350)
-+++||...+..+ +..-++|+|++.||+-.+
T Consensus 50 ~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KG 81 (99)
T 2k4b_A 50 ARVDEIYAQIPQELEWSLATVKTLLGRLVKKE 81 (99)
T ss_dssp EEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHhcccCCCHhhHHHHHHHHHHCC
Confidence 4677888877766 677899999999999655
No 166
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=20.07 E-value=24 Score=22.86 Aligned_cols=10 Identities=20% Similarity=0.746 Sum_probs=6.5
Q ss_pred cccccccccc
Q 018812 33 DACSICLEEF 42 (350)
Q Consensus 33 ~~C~ICle~f 42 (350)
..||||+..|
T Consensus 6 FiCP~C~~~l 15 (34)
T 3mjh_B 6 FICPQCMKSL 15 (34)
T ss_dssp EECTTTCCEE
T ss_pred cCCcHHHHHc
Confidence 4666666666
Done!