BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018813
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 121/221 (54%), Positives = 147/221 (66%), Gaps = 6/221 (2%)
Query: 28 ATFTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSFVAPTGWSGRFWGRTRCNFD 87
A TF N C T+WPG L P+L TGFEL +SRS AP+ WSGRFWGRTRC+ D
Sbjct: 1 AKITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTD 60
Query: 88 GSGSGSCLTGDCGSGQVECNGLGAAPPATLAEFTL-GSGGQDFYDVSLVDGYNLPMIVEX 146
+G +C T DCGSGQV CNG GA PPATL E T+ +GGQD+YDVSLVDG+NLPM V
Sbjct: 61 AAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAP 120
Query: 147 XXXXXXXXXXXXXXDVNRQCPAELRVGEGD----ACKSACEAFGSAEYCCSGAFNTPATC 202
+VN+ CPA L+V D +CKSAC AFG ++YCC+ NTP TC
Sbjct: 121 QGGTGECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPETC 180
Query: 203 KPSVYSQVFKSACPKSYSYAYDDATSTFTCTGA-DYTVTFC 242
P+ YS++F+ CP++YSYAYDD STFTC+G DY +TFC
Sbjct: 181 PPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 221
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 221 bits (564), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 114/221 (51%), Positives = 137/221 (61%), Gaps = 6/221 (2%)
Query: 28 ATFTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSFVAPTGWSGRFWGRTRCNFD 87
AT +F N C Y +WPG L + P+L +TGFEL +S P W+GRFW RT C+ D
Sbjct: 1 ATISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTD 60
Query: 88 GSGSGSCLTGDCGSGQVECNGLGAAPPATLAEFTL-GSGGQDFYDVSLVDGYNLPMIVEX 146
SG C T DC SGQV CNG GA PPATLAEF + GGQDFYDVSLVDG+NLPM V
Sbjct: 61 ASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVTP 120
Query: 147 XXXXXXXXXXXXXXDVNRQCPAELRVGEGD----ACKSACEAFGSAEYCCSGAFNTPATC 202
+VN CP+EL+ D AC SAC FG+ +YCC+ NTP TC
Sbjct: 121 QGGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPETC 180
Query: 203 KPSVYSQVFKSACPKSYSYAYDDATSTFTCTGA-DYTVTFC 242
P+ YS++F +ACP +YSYAYDD TFTC G +Y +TFC
Sbjct: 181 PPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFC 221
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 158 bits (399), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 119/218 (54%), Gaps = 16/218 (7%)
Query: 28 ATFTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSFVAPTGWSG-RFWGRTRCNF 86
A FT VN+C +T+W + G G +L + S AP G + R W RT C F
Sbjct: 1 AVFTVVNQCPFTVWAASVPVGG-------GRQLNRGESWRITAPAGTTAARIWARTGCKF 53
Query: 87 DGSGSGSCLTGDCGSGQVECNGLGAAPPATLAEFTLGS-GGQDFYDVSLVDGYNLPMIVE 145
D SG GSC TGDCG G ++C G G AP TLAE+ L DF+D+SL+DG+N+PM
Sbjct: 54 DASGRGSCRTGDCG-GVLQCTGYGRAP-NTLAEYALKQFNNLDFFDISLIDGFNVPMSFL 111
Query: 146 XXXXXXXXXXXXXXXDVNRQCPAELRVGEGDACKSACEAFGSAEYCCSGAFNTPATCKPS 205
DVN +CPAELR + C +AC F EYCC G+ C P+
Sbjct: 112 PDGGSGCSRGPRCAVDVNARCPAELR--QDGVCNNACPVFKKDEYCCVGS--AANDCHPT 167
Query: 206 VYSQVFKSACPKSYSYAYDDATSTFTC-TGADYTVTFC 242
YS+ FK CP +YSY DDATSTFTC G +Y V FC
Sbjct: 168 NYSRYFKGQCPDAYSYPKDDATSTFTCPAGTNYKVVFC 205
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 154 bits (390), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 95/217 (43%), Positives = 119/217 (54%), Gaps = 22/217 (10%)
Query: 28 ATFTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSFVAPTGWSGRFWGRTRCNFD 87
ATF +NKC YT+W + G RLDS S V P + R WGRT C FD
Sbjct: 1 ATFDILNKCTYTVW-AAASPGGGRRLDS------GQSWTITVNPGTTNARIWGRTSCTFD 53
Query: 88 GSGSGSCLTGDCGSGQVECNGLGAAPPATLAEFTLGSGGQ-DFYDVSLVDGYNLPMIVEX 146
+G G C TGDC +G +EC G G+ PP TLAEF L D+ D+SLVDG+N+PM
Sbjct: 54 ANGRGKCETGDC-NGLLECQGYGS-PPNTLAEFALNQPNNLDYIDISLVDGFNIPMDFSG 111
Query: 147 XXXXXXXXXXXXXXDVNRQCPAELRVGEGDACKSACEAFGSAEYCCSGAFNTPATCKPSV 206
D+N QCP+EL+ G C + C F + EYCC+ P +C P+
Sbjct: 112 CRGIQCSV------DINGQCPSELKAPGG--CNNPCTVFKTNEYCCTDG---PGSCGPTT 160
Query: 207 YSQVFKSACPKSYSYAYDDATSTFTC-TGADYTVTFC 242
YS+ FK CP +YSY DD TS FTC +G +Y VTFC
Sbjct: 161 YSKFFKDRCPDAYSYPQDDKTSLFTCPSGTNYKVTFC 197
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 115/220 (52%), Gaps = 21/220 (9%)
Query: 28 ATFTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSFVAPTGWS-GRFWGRTRCNF 86
AT N C YT+W G RLD + + AP G R WGRT CNF
Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLD-------RGQTWVINAPRGTKMARVWGRTNCNF 53
Query: 87 DGSGSGSCLTGDCGSGQVECNGLGAAPPATLAEFTLGS-GGQDFYDVSLVDGYNLPM-IV 144
+ +G G+C TGDCG G ++C G G PP TLAE+ L G DF+D+SLVDG+N+PM
Sbjct: 54 NAAGRGTCQTGDCG-GVLQCTGWGK-PPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFA 111
Query: 145 EXXXXXXXXXXXXXXXDVNRQCPAELRVGEGDACKSACEAFGSAEYCCSGAFNTPATCKP 204
++N +CP ELRV G C + C FG +YCC T C P
Sbjct: 112 PTNPSGGKCHAIHCTANINGECPRELRVPGG--CNNPCTTFGGQQYCC-----TQGPCGP 164
Query: 205 SVYSQVFKSACPKSYSYAYDDATSTFTCTGA--DYTVTFC 242
+ +S+ FK CP +YSY DD TSTFTC G +Y V FC
Sbjct: 165 TFFSKFFKQRCPDAYSYPQDDPTSTFTCPGGSTNYRVIFC 204
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 115/218 (52%), Gaps = 22/218 (10%)
Query: 28 ATFTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSFVAPTGWSG-RFWGRTRCNF 86
ATF VN+C YT+W + G +L Q S + G +G R WGRT C+F
Sbjct: 1 ATFEIVNRCSYTVWAAAVPGGGR--------QLNQGQSWTINVNAGTTGGRIWGRTGCSF 52
Query: 87 DGSGSGSCLTGDCGSGQVECNGLGAAPPATLAEFTLGS-GGQDFYDVSLVDGYNLPMIVE 145
DGSG G C TGDCG G + C G PP TLAEF L DF+D+SLVDG+N+PM +
Sbjct: 53 DGSGRGRCQTGDCG-GVLSCTAYG-NPPNTLAEFALNQFNNLDFFDISLVDGFNVPM--D 108
Query: 146 XXXXXXXXXXXXXXXDVNRQCPAELRVGEGDACKSACEAFGSAEYCCSGAFNTPATCKPS 205
D+N QCP L+ G C + C F + +YCC+ C P+
Sbjct: 109 FSPTSGGCRGIRCAADINGQCPGALKAPGG--CNNPCTVFKTDQYCCNS-----GACSPT 161
Query: 206 VYSQVFKSACPKSYSYAYDDATSTFTCTGA-DYTVTFC 242
YSQ FK CP +YSY DD T+TFTC G +Y V FC
Sbjct: 162 DYSQFFKRNCPDAYSYPKDDQTTTFTCPGGTNYRVVFC 199
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 148 bits (373), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 113/221 (51%), Gaps = 21/221 (9%)
Query: 27 SATFTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSFVAPTGWS-GRFWGRTRCN 85
S F N C YT+W G RL+ + S F AP G R WGRT CN
Sbjct: 1 SGVFEVHNNCPYTVWAAATPVGGGRRLE-------RGQSWWFWAPPGTKMARIWGRTNCN 53
Query: 86 FDGSGSGSCLTGDCGSGQVECNGLGAAPPATLAEFTLGS-GGQDFYDVSLVDGYNLPM-I 143
FDG+G G C TGDCG G +EC G G PP TLAE+ L DF+D+S++DG+N+PM
Sbjct: 54 FDGAGRGWCQTGDCG-GVLECKGWG-KPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSF 111
Query: 144 VEXXXXXXXXXXXXXXXDVNRQCPAELRVGEGDACKSACEAFGSAEYCCSGAFNTPATCK 203
++N +CP LRV G C + C FG +YCC T C
Sbjct: 112 GPTKPGPGKCHGIQCTANINGECPGSLRVPGG--CNNPCTTFGGQQYCC-----TQGPCG 164
Query: 204 PSVYSQVFKSACPKSYSYAYDDATSTFTCTG--ADYTVTFC 242
P+ S+ FK CP +YSY DD TSTFTCT DY V FC
Sbjct: 165 PTELSRWFKQRCPDAYSYPQDDPTSTFTCTSWTTDYKVMFC 205
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 144 bits (364), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 118/217 (54%), Gaps = 15/217 (6%)
Query: 28 ATFTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSF-VAPTGWSGRFWGRTRCNF 86
ATF VN+C YT+W A+ G LD+ G +L S + V P G+ W RT C F
Sbjct: 1 ATFEIVNRCSYTVW--AAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYF 58
Query: 87 DGSGSGSCLTGDCGSGQVECNGLGAAPPATLAEFTLGSGGQDFYDVSLVDGYNLPMIVEX 146
D SGSG C TGDCG G + C G PP TLAEF+L G+D+ D+S + G+N+PM +
Sbjct: 59 DDSGSGICKTGDCG-GLLRCKRFG-RPPTTLAEFSLNQYGKDYIDISNIKGFNVPM--DF 114
Query: 147 XXXXXXXXXXXXXXDVNRQCPAELRVGEGDACKSACEAFGSAEYCCSGAFNTPATCKPSV 206
D+ QCPA+L+ G C AC F ++EYCC T C P+
Sbjct: 115 SPTTRGCRGVRCAADIVGQCPAKLKA-PGGGCNDACTVFQTSEYCC-----TTGKCGPTE 168
Query: 207 YSQVFKSACPKSYSYAYDDATSTFTCTG-ADYTVTFC 242
YS+ FK CP ++SY D T T TC G ++Y VTFC
Sbjct: 169 YSRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFC 204
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 144 bits (363), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 118/217 (54%), Gaps = 15/217 (6%)
Query: 28 ATFTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSF-VAPTGWSGRFWGRTRCNF 86
ATF VN+C YT+W A+ G LD+ G +L S + V P G+ W RT C F
Sbjct: 1 ATFEIVNRCSYTVW--AAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYF 58
Query: 87 DGSGSGSCLTGDCGSGQVECNGLGAAPPATLAEFTLGSGGQDFYDVSLVDGYNLPMIVEX 146
D SG G C TGDCG G ++C G PP TLAEF+L G+D+ D+S + G+N+PM +
Sbjct: 59 DDSGRGICRTGDCG-GLLQCKRFG-RPPTTLAEFSLNQYGKDYIDISNIKGFNVPM--DF 114
Query: 147 XXXXXXXXXXXXXXDVNRQCPAELRVGEGDACKSACEAFGSAEYCCSGAFNTPATCKPSV 206
D+ QCPA+L+ G C AC F ++EYCC T C P+
Sbjct: 115 SPTTRGCRGVRCAADIVGQCPAKLKA-PGGGCNDACTVFQTSEYCC-----TTGKCGPTE 168
Query: 207 YSQVFKSACPKSYSYAYDDATSTFTCTG-ADYTVTFC 242
YS+ FK CP ++SY D T T TC G ++Y VTFC
Sbjct: 169 YSRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFC 204
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 144 bits (363), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 118/217 (54%), Gaps = 15/217 (6%)
Query: 28 ATFTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSF-VAPTGWSGRFWGRTRCNF 86
ATF VN+C YT+W A+ G LD+ G +L S + V P G+ W RT C F
Sbjct: 1 ATFEIVNRCSYTVW--AAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYF 58
Query: 87 DGSGSGSCLTGDCGSGQVECNGLGAAPPATLAEFTLGSGGQDFYDVSLVDGYNLPMIVEX 146
D SGSG C TGDCG G + C G PP TLAEF+L G+D+ D+S + G+N+PM +
Sbjct: 59 DDSGSGICKTGDCG-GLLRCKRFG-RPPTTLAEFSLNQYGKDYIDISNIKGFNVPM--DF 114
Query: 147 XXXXXXXXXXXXXXDVNRQCPAELRVGEGDACKSACEAFGSAEYCCSGAFNTPATCKPSV 206
D+ QCPA+L+ G C AC F ++EYCC T C P+
Sbjct: 115 SPTTRGCRGVRCAADIVGQCPAKLKA-PGGGCNDACTVFQTSEYCC-----TTGKCGPTE 168
Query: 207 YSQVFKSACPKSYSYAYDDATSTFTCTG-ADYTVTFC 242
YS+ FK CP ++SY D T T TC G ++Y VTFC
Sbjct: 169 YSRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFC 204
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 117/217 (53%), Gaps = 15/217 (6%)
Query: 28 ATFTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSF-VAPTGWSGRFWGRTRCNF 86
ATF VN+C YT+W A+ G LD+ G +L S + V P G+ W RT C F
Sbjct: 1 ATFEIVNRCSYTVW--AAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYF 58
Query: 87 DGSGSGSCLTGDCGSGQVECNGLGAAPPATLAEFTLGSGGQDFYDVSLVDGYNLPMIVEX 146
D SGSG C TGDCG G + C G PP TLAEF+L G+D+ D+S + G+N+PM
Sbjct: 59 DDSGSGICKTGDCG-GLLRCKRFG-RPPTTLAEFSLNQYGKDYIDISNIKGFNVPM--NF 114
Query: 147 XXXXXXXXXXXXXXDVNRQCPAELRVGEGDACKSACEAFGSAEYCCSGAFNTPATCKPSV 206
D+ QCPA+L+ G C AC F ++EYCC T C P+
Sbjct: 115 SPTTRGCRGVRCAADIVGQCPAKLKA-PGGGCNDACTVFQTSEYCC-----TTGKCGPTE 168
Query: 207 YSQVFKSACPKSYSYAYDDATSTFTCTG-ADYTVTFC 242
YS+ FK CP ++SY D T T TC G ++Y VTFC
Sbjct: 169 YSRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFC 204
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/217 (41%), Positives = 117/217 (53%), Gaps = 15/217 (6%)
Query: 28 ATFTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSF-VAPTGWSGRFWGRTRCNF 86
ATF VN+C YT+W A+ G LD+ G +L S + V P G+ W RT C F
Sbjct: 1 ATFEIVNRCSYTVW--AAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYF 58
Query: 87 DGSGSGSCLTGDCGSGQVECNGLGAAPPATLAEFTLGSGGQDFYDVSLVDGYNLPMIVEX 146
D SGSG C TGDCG G + C G PP TLAEF+L G+D+ D+S + G+N+PM
Sbjct: 59 DDSGSGICKTGDCG-GLLRCKRFG-RPPTTLAEFSLNQYGKDYIDISNIKGFNVPM--NF 114
Query: 147 XXXXXXXXXXXXXXDVNRQCPAELRVGEGDACKSACEAFGSAEYCCSGAFNTPATCKPSV 206
D+ QCPA+L+ G C AC F ++EYCC T C P+
Sbjct: 115 SPTTRGCRGVRCAADIVGQCPAKLKA-PGGGCNDACTVFQTSEYCC-----TTGKCGPTE 168
Query: 207 YSQVFKSACPKSYSYAYDDATSTFTCTG-ADYTVTFC 242
YS+ FK CP ++SY D T T TC G ++Y VTFC
Sbjct: 169 YSRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFC 204
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 142 bits (359), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/217 (41%), Positives = 116/217 (53%), Gaps = 15/217 (6%)
Query: 28 ATFTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSF-VAPTGWSGRFWGRTRCNF 86
ATF VN+C YT+W A+ G LD+ G +L S + V P G+ W RT C F
Sbjct: 1 ATFEIVNRCSYTVW--AAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXF 58
Query: 87 DGSGSGSCLTGDCGSGQVECNGLGAAPPATLAEFTLGSGGQDFYDVSLVDGYNLPMIVEX 146
D SGSG C TGDCG G + C G PP TLAEF+L G+D+ D+S + G+N+PM
Sbjct: 59 DDSGSGICKTGDCG-GLLRCKRFG-RPPTTLAEFSLNQXGKDYIDISNIKGFNVPM--NF 114
Query: 147 XXXXXXXXXXXXXXDVNRQCPAELRVGEGDACKSACEAFGSAEYCCSGAFNTPATCKPSV 206
D+ QCPA+L+ G C AC F ++EYCC T C P+
Sbjct: 115 SPTTRGCRGVRCAADIVGQCPAKLKA-PGGGCNDACTVFQTSEYCC-----TTGKCGPTE 168
Query: 207 YSQVFKSACPKSYSYAYDDATSTFTCTG-ADYTVTFC 242
S+ FK CP ++SY D T T TC G ++Y VTFC
Sbjct: 169 XSRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFC 204
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 112/220 (50%), Gaps = 21/220 (9%)
Query: 28 ATFTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSFVAPTGWS-GRFWGRTRCNF 86
AT N C YT+W G RL+ + + AP G R WGRT CNF
Sbjct: 1 ATIEVRNNCPYTVWAASTPIGGGRRLN-------RGQTWVINAPRGTKMARIWGRTGCNF 53
Query: 87 DGSGSGSCLTGDCGSGQVECNGLGAAPPATLAEFTLGS-GGQDFYDVSLVDGYNLPM-IV 144
+ +G G+C TGDCG G ++C G G PP TLAE+ L DF+D+SLVDG+N+PM
Sbjct: 54 NAAGRGTCQTGDCG-GVLQCTGWGK-PPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFA 111
Query: 145 EXXXXXXXXXXXXXXXDVNRQCPAELRVGEGDACKSACEAFGSAEYCCSGAFNTPATCKP 204
++N +CP L+V G C + C FG +YCC T C P
Sbjct: 112 PTKPSGGKCHAIHCTANINGECPRALKVPGG--CNNPCTTFGGQQYCC-----TQGPCGP 164
Query: 205 SVYSQVFKSACPKSYSYAYDDATSTFTCTGA--DYTVTFC 242
+ S+ FK CP +YSY DD TSTFTC G +Y V FC
Sbjct: 165 TELSKFFKKRCPDAYSYPQDDPTSTFTCPGGSTNYRVVFC 204
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 138 bits (347), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/217 (41%), Positives = 114/217 (52%), Gaps = 15/217 (6%)
Query: 28 ATFTFVNKCDYTIWPGILANAGSPRLDSTGFELPQDSSRSF-VAPTGWSGRFWGRTRCNF 86
ATF VN+C T+W A+ G LD+ G +L S + V P G+ W RT C F
Sbjct: 1 ATFEIVNRCSXTVW--AAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXF 58
Query: 87 DGSGSGSCLTGDCGSGQVECNGLGAAPPATLAEFTLGSGGQDFYDVSLVDGYNLPMIVEX 146
D SGSG C TGDCG G + C G PP TLAEF+L G+D D+S + G+N+PM
Sbjct: 59 DDSGSGICKTGDCG-GLLRCKRFG-RPPTTLAEFSLNQXGKDXIDISNIKGFNVPM--NF 114
Query: 147 XXXXXXXXXXXXXXDVNRQCPAELRVGEGDACKSACEAFGSAEYCCSGAFNTPATCKPSV 206
D+ QCPA+L+ G C AC F ++EYCC T C P+
Sbjct: 115 SPTTRGCRGVRCAADIVGQCPAKLKA-PGGGCNDACTVFQTSEYCC-----TTGKCGPTE 168
Query: 207 YSQVFKSACPKSYSYAYDDATSTFTCTG-ADYTVTFC 242
S+ FK CP ++SY D T T TC G ++Y VTFC
Sbjct: 169 XSRFFKRLCPDAFSYVLDKPT-TVTCPGSSNYRVTFC 204
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 62/121 (51%), Gaps = 10/121 (8%)
Query: 28 ATFTFVNKCDYTIWPGI---LANAGSPRLDSTGFELPQDSSRSFVAPTGWSGRFWGRTRC 84
A T N+C +T+WP + LA G G EL +S S P S WGRT C
Sbjct: 1 APLTITNRCHFTVWPAVALVLAQGGG------GTELHPGASWSLDTPVIGSQYIWGRTGC 54
Query: 85 NFDGSGSGSCLTGDCGSGQVECNGLGAAPPATLAEFTLGSGGQDFYDVSLVDGYNLPMIV 144
+FD +G G C TGDCG + C G A P T+AE ++ G + S + G+N+PM +
Sbjct: 55 SFDRAGKGRCQTGDCGGSSLTCGG-NPAVPTTMAEVSVLQGNYTYGVTSTLKGFNVPMNL 113
Query: 145 E 145
+
Sbjct: 114 K 114
>pdb|3K2E|A Chain A, Crystal Structure Of Enoyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum At 1.9a
Resolution
pdb|3K2E|B Chain B, Crystal Structure Of Enoyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum At 1.9a
Resolution
pdb|3K31|A Chain A, Crystal Structure Of Eonyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum In Complex With
Nad At 1.9a Resolution
pdb|3K31|B Chain B, Crystal Structure Of Eonyl-(Acyl-Carrier-Protein)
Reductase From Anaplasma Phagocytophilum In Complex With
Nad At 1.9a Resolution
Length = 296
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 95 LTGDCGSGQVECNGLGAAPPATLAEFTLGSGGQDFYDVSLVDGYNLPM 142
L D G Q+ N + A P TLA SG DF+ + + YN P+
Sbjct: 196 LAVDLGKQQIRVNAISAGPVRTLAS----SGISDFHYILTWNKYNSPL 239
>pdb|2KHU|A Chain A, Solution Structure Of The Ubiquitin-Binding Motif Of Human
Polymerase Iota
pdb|2KHW|A Chain A, Solution Structure Of The Human Polymerase Iota Ubm2-
Ubiquitin Complex
Length = 108
Score = 29.6 bits (65), Expect = 2.8, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 221 YAYDDATSTFTCT-GADYTVTF 241
+ YDDAT TFT T G+D +TF
Sbjct: 43 WTYDDATKTFTVTEGSDEKITF 64
>pdb|3SVT|A Chain A, Structure Of A Short-Chain Type DehydrogenaseREDUCTASE
FROM Mycobacterium Ulcerans
pdb|3SVT|B Chain B, Structure Of A Short-Chain Type DehydrogenaseREDUCTASE
FROM Mycobacterium Ulcerans
Length = 281
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 46 ANAGSPRLDSTGFELPQDSSRSFVAPTGWSGRFWGRTRC 84
AN G+ R + T +++R+ A T W GR G C
Sbjct: 60 ANGGAIRYEPTDITNEDETARAVDAVTAWHGRLHGVVHC 98
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,024,466
Number of Sequences: 62578
Number of extensions: 308144
Number of successful extensions: 795
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 713
Number of HSP's gapped (non-prelim): 19
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)