Query 018814
Match_columns 350
No_of_seqs 169 out of 1927
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 06:28:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/018814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.3 1.9E-06 6.7E-11 68.0 7.4 69 277-346 35-105 (137)
2 3b5d_A Multidrug transporter E 98.2 2.6E-06 8.9E-11 64.9 6.4 67 128-194 37-104 (110)
3 2i68_A Protein EMRE; transmemb 98.1 2.6E-06 8.8E-11 67.3 5.0 66 128-193 37-103 (137)
4 3b5d_A Multidrug transporter E 98.1 1.8E-05 6.3E-10 60.1 9.3 67 279-346 37-105 (110)
5 2l2t_A Receptor tyrosine-prote 24.7 62 0.0021 19.5 2.7 13 334-346 25-37 (44)
6 2ks1_B Epidermal growth factor 21.8 68 0.0023 19.3 2.5 11 335-345 27-37 (44)
7 3l1l_A Arginine/agmatine antip 9.3 5.9E+02 0.02 22.7 6.6 21 327-347 409-429 (445)
8 3rko_J NADH-quinone oxidoreduc 8.0 8E+02 0.027 19.5 10.1 33 313-346 128-162 (184)
9 2h3o_A MERF; membrane protein, 7.5 42 0.0014 21.7 -1.5 13 336-348 43-55 (61)
10 3ne5_A Cation efflux system pr 6.6 1.2E+03 0.041 23.9 8.1 38 299-337 905-942 (1054)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.27 E-value=1.9e-06 Score=68.02 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHH-HHHhhccchhHHHHh-hhhHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHhhhhe
Q 018814 277 SCILAFFLNYSI-FLNTTLNSAVTQTIC-GNLKDLFTIGLGWILFGGLPFDFLNVFGQLLGFLGSGLYAYYK 346 (350)
Q Consensus 277 ~~~~~~~~~~~~-~~~~~~~~a~~~sv~-~~~~~v~~~~ls~~~~~e~~~t~~~~~G~~li~~g~~~~~~~~ 346 (350)
.+++++..++.. .+++|+.++..+..+ ..+.|++++++|+++||| ++|+.+++|++++++|+++.+..+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE-~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ-RLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHhcCC
Confidence 334444444444 588999999987776 899999999999999999 999999999999999999987643
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.19 E-value=2.6e-06 Score=64.88 Aligned_cols=67 Identities=10% Similarity=0.206 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHH-HHHHHHHHHHHHHHHhccccCcchhhhHHHhhhhceeeecc
Q 018814 128 AVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGAR 194 (350)
Q Consensus 128 ~~~~~~~~~~~~~al~~~~~s~~~~l-~~~~p~~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~~ 194 (350)
.+++.+..++...++++.|++.+-.+ ..+.|+++.+++++++||++++.++.|+.++++|+.+....
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 36778888999999999999999877 89999999999999999999999999999999999886543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.11 E-value=2.6e-06 Score=67.33 Aligned_cols=66 Identities=11% Similarity=0.220 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHH-HHHHHHHHHHHHHHHhccccCcchhhhHHHhhhhceeeec
Q 018814 128 AVAYLLYMVVSVESVRGVNVPMYTTL-RRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGAFVAGA 193 (350)
Q Consensus 128 ~~~~~~~~~~~~~al~~~~~s~~~~l-~~~~p~~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv~l~~~ 193 (350)
.+++.+..++++.+++++|++.+..+ .++.|+++.++++++++|++++.+++|+.++++|+.+...
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 36788888999999999999988777 8999999999999999999999999999999999998644
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.10 E-value=1.8e-05 Score=60.11 Aligned_cols=67 Identities=13% Similarity=0.220 Sum_probs=55.6
Q ss_pred HHHHHHHHHH-HHHhhccchhHHHHh-hhhHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHhhhhe
Q 018814 279 ILAFFLNYSI-FLNTTLNSAVTQTIC-GNLKDLFTIGLGWILFGGLPFDFLNVFGQLLGFLGSGLYAYYK 346 (350)
Q Consensus 279 ~~~~~~~~~~-~~~~~~~~a~~~sv~-~~~~~v~~~~ls~~~~~e~~~t~~~~~G~~li~~g~~~~~~~~ 346 (350)
++++...+.. .+++|+.+...+... ..+.|+.++++|+++||| ++|+.+++|.++++.|+...+..+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E-~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ-RLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3344444433 478899998888666 899999999999999999 999999999999999999987654
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=24.71 E-value=62 Score=19.46 Aligned_cols=13 Identities=23% Similarity=0.110 Sum_probs=5.5
Q ss_pred HHHHHHHHhhhhe
Q 018814 334 LGFLGSGLYAYYK 346 (350)
Q Consensus 334 li~~g~~~~~~~~ 346 (350)
++.++..+|.+++
T Consensus 25 ii~~~~~~~~RRR 37 (44)
T 2l2t_A 25 IVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 3344444444433
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=21.85 E-value=68 Score=19.28 Aligned_cols=11 Identities=36% Similarity=0.443 Sum_probs=4.5
Q ss_pred HHHHHHHhhhh
Q 018814 335 GFLGSGLYAYY 345 (350)
Q Consensus 335 i~~g~~~~~~~ 345 (350)
+.++..+|.++
T Consensus 27 i~~~~~~~~RR 37 (44)
T 2ks1_B 27 VALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhh
Confidence 33344444433
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=9.31 E-value=5.9e+02 Score=22.67 Aligned_cols=21 Identities=10% Similarity=0.026 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHhhhhee
Q 018814 327 LNVFGQLLGFLGSGLYAYYKL 347 (350)
Q Consensus 327 ~~~~G~~li~~g~~~~~~~~~ 347 (350)
..+.|.++++.|..+|.+.++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~ 429 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYN 429 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 455678888888888875443
No 8
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=8.03 E-value=8e+02 Score=19.49 Aligned_cols=33 Identities=18% Similarity=0.050 Sum_probs=22.8
Q ss_pred HHHHHHhCCCCcchhhHHHHHHHH--HHHHHhhhhe
Q 018814 313 GLGWILFGGLPFDFLNVFGQLLGF--LGSGLYAYYK 346 (350)
Q Consensus 313 ~ls~~~~~e~~~t~~~~~G~~li~--~g~~~~~~~~ 346 (350)
-+|..+++| -+=+.++.|.++.+ +|.+...+++
T Consensus 128 ~iG~~Lft~-Y~lpFElaSvlLLvAmIGAIvLarr~ 162 (184)
T 3rko_J 128 AVGITLFGP-YVLAVELASMLLLAGLVVAFHVGREE 162 (184)
T ss_dssp HHHHHHTTT-SHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 477788888 88888888887764 4545554433
No 9
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=7.54 E-value=42 Score=21.73 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=7.7
Q ss_pred HHHHHHhhhheec
Q 018814 336 FLGSGLYAYYKLV 348 (350)
Q Consensus 336 ~~g~~~~~~~~~~ 348 (350)
++|..+|...|++
T Consensus 43 figl~~Y~~~r~~ 55 (61)
T 2h3o_A 43 FIGLTIYAIQRKR 55 (61)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhh
Confidence 3477777655544
No 10
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=6.60 E-value=1.2e+03 Score=23.90 Aligned_cols=38 Identities=11% Similarity=-0.247 Sum_probs=26.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHhCCCCcchhhHHHHHHHHH
Q 018814 299 TQTICGNLKDLFTIGLGWILFGGLPFDFLNVFGQLLGFL 337 (350)
Q Consensus 299 ~~sv~~~~~~v~~~~ls~~~~~e~~~t~~~~~G~~li~~ 337 (350)
...++...-.+...+.+..++|. +++....+|+++.++
T Consensus 905 l~il~~ip~~~~g~~~~l~l~g~-~l~~~~~~g~i~l~G 942 (1054)
T 3ne5_A 905 LLIISSVPFALVGGIWLLWWMGF-HLSVATGTGFIALAG 942 (1054)
T ss_dssp HHHHTTSHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC-CccHHHHHHHHHHHH
Confidence 33344444455566677778898 999999999876543
Done!