Query 018814
Match_columns 350
No_of_seqs 169 out of 1927
Neff 9.2
Searched_HMMs 13730
Date Mon Mar 25 06:28:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/018814.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/018814hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 8.9 4.7E+02 0.034 21.3 22.1 20 159-178 240-259 (383)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 8.0 1.3E+02 0.0096 14.2 3.0 17 201-217 3-19 (27)
3 d1eysh2 f.23.10.1 (H:7-43) Pho 3.2 3.9E+02 0.028 13.8 2.6 21 329-349 10-30 (37)
4 d2iuba2 f.17.3.1 (A:286-349) M 2.9 3.8E+02 0.028 15.3 2.3 11 336-346 51-61 (64)
5 d2h5na1 a.287.1.2 (A:1-132) Hy 2.9 4.1E+02 0.03 16.8 2.4 34 175-212 83-116 (132)
6 d2axtj1 f.23.32.1 (J:7-40) Pho 2.7 4.1E+02 0.03 13.3 1.7 10 334-343 16-25 (34)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 2.5 6.8E+02 0.05 15.3 3.8 18 117-134 61-78 (91)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.5 1.1E+03 0.08 17.5 6.0 62 123-188 4-65 (248)
9 d1ppjd2 f.23.11.1 (D:196-241) 2.1 6.2E+02 0.045 13.6 2.5 20 326-345 10-29 (46)
10 d1ppje2 f.23.12.1 (E:1-69) Iro 2.0 5.4E+02 0.04 15.3 2.0 18 50-67 39-56 (69)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=8.87 E-value=4.7e+02 Score=21.31 Aligned_cols=20 Identities=5% Similarity=-0.182 Sum_probs=9.7
Q ss_pred HHHHHHHHHHhccccCcchh
Q 018814 159 AFTMIMEYFLAGQKYTPPVV 178 (350)
Q Consensus 159 ~~~~l~~~~~~~e~~~~~~~ 178 (350)
.++.++...+.++|.+....
T Consensus 240 ~~~~~~~~~~~~~k~~~~~~ 259 (383)
T d1u7ga_ 240 ILGWIFGEWALRGLPSLLGA 259 (383)
T ss_dssp HHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHH
Confidence 33333444455666665443
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.99 E-value=1.3e+02 Score=14.15 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 018814 201 FGYAVVFLANITTAIYL 217 (350)
Q Consensus 201 ~G~~l~l~sa~~~a~~~ 217 (350)
.|.+..-++.++||.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57777888888888874
No 3
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=3.17 E-value=3.9e+02 Score=13.80 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHhhhheecC
Q 018814 329 VFGQLLGFLGSGLYAYYKLVG 349 (350)
Q Consensus 329 ~~G~~li~~g~~~~~~~~~~~ 349 (350)
+-.+-+-++|.++|-+++.++
T Consensus 10 ly~Fw~FFagLi~YL~rE~~R 30 (37)
T d1eysh2 10 IWAFWLFFFGLIIYLRREDKR 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 345556677877887655443
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=2.94 E-value=3.8e+02 Score=15.29 Aligned_cols=11 Identities=18% Similarity=0.480 Sum_probs=4.1
Q ss_pred HHHHHHhhhhe
Q 018814 336 FLGSGLYAYYK 346 (350)
Q Consensus 336 ~~g~~~~~~~~ 346 (350)
..++..+.+-|
T Consensus 51 ~~~~~~~~~f~ 61 (64)
T d2iuba2 51 VIAVIMVVYFK 61 (64)
T ss_dssp HHHHHHHTTTT
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 5
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=2.85 E-value=4.1e+02 Score=16.84 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=21.2
Q ss_pred cchhhhHHHhhhhceeeeccCcccchhHHHHHHHHHHH
Q 018814 175 PPVVGSVGLIILGAFVAGARDLSFDFFGYAVVFLANIT 212 (350)
Q Consensus 175 ~~~~~~~~l~~~Gv~l~~~~~~~~~~~G~~l~l~sa~~ 212 (350)
++++.+ ...|+++.+.+|.+.+ .=.+|.++|.+|
T Consensus 83 rkkyva---sylgvimasdgdiddn-elalwtlistlc 116 (132)
T d2h5na1 83 RKKYVA---SYLGVIMASDGDIDDN-ELALWTLISTLC 116 (132)
T ss_dssp HHHHHH---HHHHHHSCBTTBCCHH-HHHHHHHHHHHH
T ss_pred HHHHHH---HHhhheeccCCCCCcc-HhHHHHHHHHHh
Confidence 444443 4567888787777666 334667776665
No 6
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.70 E-value=4.1e+02 Score=13.33 Aligned_cols=10 Identities=20% Similarity=0.398 Sum_probs=6.1
Q ss_pred HHHHHHHHhh
Q 018814 334 LGFLGSGLYA 343 (350)
Q Consensus 334 li~~g~~~~~ 343 (350)
+.++|+++|.
T Consensus 16 i~~vG~FfYG 25 (34)
T d2axtj1 16 IVIVGLFFYG 25 (34)
T ss_dssp HHHHHHHHHH
T ss_pred Hhheeeeeee
Confidence 4456777664
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=2.52 E-value=6.8e+02 Score=15.28 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=10.2
Q ss_pred chHHHHHHhhHHHHHHHH
Q 018814 117 PLKTLMHTLPLAVAYLLY 134 (350)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~ 134 (350)
..+..+..+|.-+...+.
T Consensus 61 ~lEi~WtiIP~iil~~ia 78 (91)
T d1fftb2 61 KVEAVVWTVPILIIIFLA 78 (91)
T ss_dssp HHHHHTTHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHHH
Confidence 356666666655554443
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.45 E-value=1.1e+03 Score=17.54 Aligned_cols=62 Identities=18% Similarity=0.000 Sum_probs=34.4
Q ss_pred HHhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhccccCcchhhhHHHhhhhc
Q 018814 123 HTLPLAVAYLLYMVVSVESVRGVNVPMYTTLRRTTVAFTMIMEYFLAGQKYTPPVVGSVGLIILGA 188 (350)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~al~~~~~s~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~~~~l~~~Gv 188 (350)
+++.+|++.++..+.....+..-+...+. ...+.+.++.++++.+|.-+.+++.=.+++..+
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~ 65 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVYPGMAGMGL 65 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhhhHHHHHHH
Confidence 35556666666655555555444444433 234556667777887776666665444433333
No 9
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.08 E-value=6.2e+02 Score=13.63 Aligned_cols=20 Identities=10% Similarity=-0.263 Sum_probs=12.4
Q ss_pred hhhHHHHHHHHHHHHHhhhh
Q 018814 326 FLNVFGQLLGFLGSGLYAYY 345 (350)
Q Consensus 326 ~~~~~G~~li~~g~~~~~~~ 345 (350)
...++.+..++.++.+|..+
T Consensus 10 G~Kv~~~l~~l~~l~yy~KR 29 (46)
T d1ppjd2 10 GLKMLLMMGLLLPLVYAMKR 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777643
No 10
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.01 E-value=5.4e+02 Score=15.28 Aligned_cols=18 Identities=17% Similarity=0.043 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 018814 50 SYMACAVLLVMFNKAALS 67 (350)
Q Consensus 50 ~~~~~~~~~~~~~K~~l~ 67 (350)
.-+...+......|.+.+
T Consensus 39 ~~g~~~v~~ay~AK~~V~ 56 (69)
T d1ppje2 39 VTATTTVGVAYAAKNVVS 56 (69)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 333444444445565554
Done!