BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 018817
(350 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/308 (35%), Positives = 165/308 (53%), Gaps = 14/308 (4%)
Query: 4 VKGLSESGRLTSVPSKYFFEKD----LNDDCINSEAE---TIPIIDFSMLTSGSPEQRYK 56
V+ L++SG + S+P +Y K+ +ND + + E +P ID + S + R
Sbjct: 7 VESLAKSG-IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIREN 65
Query: 57 TIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIR-W 115
I+ + A L WG +INHG+P L + + +A E FF LS E+K +YA + I+ +
Sbjct: 66 CIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGY 125
Query: 116 GTSFNVNVDKTLFWRDYLKIHVHPQFNA-----PQNPLGFSETIQEYCKRVRELANELLK 170
G+ N L W DY +P+ P+ P + E EY K +R LA ++ K
Sbjct: 126 GSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFK 185
Query: 171 GIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQND 230
+ LGLE ++K + + + +N YP CPQPE+ +G+ H+D LT ++ N
Sbjct: 186 ALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM 245
Query: 231 HVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAH 290
GL + ++GKW+ P S V++IGD +EILSNGKYKS+LHR +VN + RIS A
Sbjct: 246 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFC 305
Query: 291 GPPLDTVV 298
PP D +V
Sbjct: 306 EPPKDKIV 313
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/308 (35%), Positives = 165/308 (53%), Gaps = 14/308 (4%)
Query: 4 VKGLSESGRLTSVPSKYFFEKD----LNDDCINSEAE---TIPIIDFSMLTSGSPEQRYK 56
V+ L++SG + S+P +Y K+ +ND + + E +P ID + S + R
Sbjct: 6 VESLAKSG-IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIREN 64
Query: 57 TIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIR-W 115
I+ + A L WG +INHG+P L + + +A E FF LS E+K +YA + I+ +
Sbjct: 65 CIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGY 124
Query: 116 GTSFNVNVDKTLFWRDYLKIHVHPQFNA-----PQNPLGFSETIQEYCKRVRELANELLK 170
G+ N L W DY +P+ P+ P + E EY K +R LA ++ K
Sbjct: 125 GSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFK 184
Query: 171 GIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQND 230
+ LGLE ++K + + + +N YP CPQPE+ +G+ H+D LT ++ N
Sbjct: 185 ALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM 244
Query: 231 HVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAH 290
GL + ++GKW+ P S V++IGD +EILSNGKYKS+LHR +VN + RIS A
Sbjct: 245 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFC 304
Query: 291 GPPLDTVV 298
PP D +V
Sbjct: 305 EPPKDKIV 312
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 184 bits (466), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 108/308 (35%), Positives = 163/308 (52%), Gaps = 14/308 (4%)
Query: 4 VKGLSESGRLTSVPSKYFFEKD----LNDDCINSEAE---TIPIIDFSMLTSGSPEQRYK 56
V+ L++SG + S+P +Y K+ +ND + + E +P ID + S + R
Sbjct: 7 VESLAKSG-IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIREN 65
Query: 57 TIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIR-W 115
I+ + A L WG +INHG+P L + + +A E FF LS E+K +YA + I+ +
Sbjct: 66 CIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGY 125
Query: 116 GTSFNVNVDKTLFWRDYLKIHVHPQFNA-----PQNPLGFSETIQEYCKRVRELANELLK 170
G+ N L W DY +P+ P+ P + E EY K +R LA ++ K
Sbjct: 126 GSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFK 185
Query: 171 GIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTILMQND 230
+ LGLE ++K + + +N YP CPQPE+ +G+ H+D LT ++ N
Sbjct: 186 ALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNX 245
Query: 231 HVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKATRISVATAH 290
GL + ++GKW+ P S V +IGD +EILSNGKYKS+LHR +VN + RIS A
Sbjct: 246 VPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFC 305
Query: 291 GPPLDTVV 298
PP D +V
Sbjct: 306 EPPKDKIV 313
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 164 bits (416), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 160/303 (52%), Gaps = 11/303 (3%)
Query: 36 ETIPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFD 95
E PII + +R T + I +AC WGFFE++NHG+P + D + + ++ +
Sbjct: 2 ENFPIISLDKVNG---VERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYK 58
Query: 96 LSDEQK-REYAGKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHVHPQFNAPQNPLGFSETI 154
EQ+ +E K + ++ + + + + T F + + + P + E
Sbjct: 59 KCXEQRFKELVASKALEGVQAEVT-DXDWESTFFLK---HLPISNISEVPDLDEEYREVX 114
Query: 155 QEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGL 214
+++ KR+ +LA ELL + E+LGLE+ Y++ A + V+ YPPCP+P+++ GL
Sbjct: 115 RDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGL 174
Query: 215 PPHSDHGLLTILMQNDHV-GLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLH 273
H+D G + +L Q+D V GL + DG+WI V P S VVN+GD +E+++NGKYKSV H
Sbjct: 175 RAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXH 234
Query: 274 RAVVNGKATRISVATAHGPPLDTVVGPAQDLLDN--ENRPPLYRGIKYREYLQLQQSNQL 331
R + R S+A+ + P D V+ PA L++ E +Y + +Y +L +
Sbjct: 235 RVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGLKF 294
Query: 332 NGK 334
K
Sbjct: 295 QAK 297
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 20/233 (8%)
Query: 59 QAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKLFDPIRWGTS 118
Q +G + ++GF + ++ + D + ++++FF L E K++YAG K R
Sbjct: 24 QELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVK--GGARGYIP 81
Query: 119 FNVNVDKTL-------FWRDYLKIHVHPQFNA-------PQNPLGFSETIQEYCKRVREL 164
F V K FW + +F A P F + +
Sbjct: 82 FGVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGX 141
Query: 165 ANELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLT 224
++L+ I L LE + + + D + +L + YPP P+ + H D +T
Sbjct: 142 GGKVLEAIATYLKLERDFFKPTVQ---DGNSVLRLLHYPPIPKDATGVRAGAHGDINTIT 198
Query: 225 ILMQNDHVGLHV-RHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAV 276
+L+ + GL V DG+W+P+NPPPG V+NIGD +E L+N S +HR V
Sbjct: 199 LLLGAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVV 251
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 134/319 (42%), Gaps = 41/319 (12%)
Query: 38 IPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLS 97
+P ID S L + + Q I A GFF +NHG+ N R + E ++
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI-NVQRLSQ-KTKEFHMSIT 66
Query: 98 DEQKREYA----GKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHV---HPQFNA--PQNPL 148
E+K + A K+ D +R G ++ K + YL + HP+ A P + +
Sbjct: 67 PEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEV 126
Query: 149 ----------GFSETIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLV 198
GF + ++Y V L++ LLKG +LG EE++ + + D+ +V
Sbjct: 127 NVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPD-DTLASVV 185
Query: 199 VNLYPPC-PQPEVV---------MGLPPHSDHGLLTILMQNDHVGLHVRHDGKWIPVNPP 248
+ YP P PE + H D L+T+L Q++ L V + +
Sbjct: 186 LIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEAD 245
Query: 249 PGSFVVNIGDHMEILSNGKYKSVLHRA-VVNGKATRISVATAHGPPLDTVVGPAQDLLDN 307
+++N G +M L+N YK+ +HR VN + + G D+V+ P N
Sbjct: 246 DTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQSLPFFVNLG--YDSVIDPFDPREPN 303
Query: 308 --ENRPPLYRGIKYREYLQ 324
+R PL Y +YLQ
Sbjct: 304 GKSDREPL----SYGDYLQ 318
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 134/319 (42%), Gaps = 41/319 (12%)
Query: 38 IPIIDFSMLTSGSPEQRYKTIQAIGNACLKWGFFEVINHGVPNTLRDEMIRASESFFDLS 97
+P ID S L + + Q I A GFF +NHG+ N R + E ++
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI-NVQRLSQ-KTKEFHMSIT 66
Query: 98 DEQKREYA----GKKLFDPIRWGTSFNVNVDKTLFWRDYLKIHV---HPQFNA--PQNPL 148
E+K + A K+ D +R G ++ K + YL + HP+ A P + +
Sbjct: 67 PEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEV 126
Query: 149 ----------GFSETIQEYCKRVRELANELLKGIMESLGLEESYIQKAMDLETDSHQLLV 198
GF + ++Y V L++ LLKG +LG EE++ + + D+ +V
Sbjct: 127 NVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPD-DTLASVV 185
Query: 199 VNLYPPC-PQPEVV---------MGLPPHSDHGLLTILMQNDHVGLHVRHDGKWIPVNPP 248
+ YP P PE + H D L+T+L Q++ L V + +
Sbjct: 186 LIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEAD 245
Query: 249 PGSFVVNIGDHMEILSNGKYKSVLHRA-VVNGKATRISVATAHGPPLDTVVGPAQDLLDN 307
+++N G +M L+N YK+ +HR VN + + G D+V+ P N
Sbjct: 246 DTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQSLPFFVNLG--YDSVIDPFDPREPN 303
Query: 308 --ENRPPLYRGIKYREYLQ 324
+R PL Y +YLQ
Sbjct: 304 GKSDREPL----SYGDYLQ 318
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 22/225 (9%)
Query: 69 GFFEVINHGVPNTLRDEMIRASESFFDLSDEQKREYAGKKL----FDPIRWGTSFNVNVD 124
GF + NH + L + + ++FF+ E K E+ + F P + +
Sbjct: 26 GFGVLSNHPIDKELVERIYTEWQAFFN--SEAKNEFXFNRETHDGFFPASISETAKGHTV 83
Query: 125 KTLFWRDYLKIHVHPQFNAPQNPLGFSETIQEYCKRVRELANELLKGIMESLGLEESYIQ 184
K + ++Y HV+P P + I Y ++ LA+ELL+ I E+ +E +
Sbjct: 84 KDI--KEYY--HVYPWGRIPDS---LRANILAYYEKANTLASELLEWI-ETYSPDEIKAK 135
Query: 185 KAMDLE---TDSHQLLVVNL-YPPCPQPEVVMGL--PPHSDHGLLTILMQNDHVGLHVR- 237
++ L +SH+ L+ L YPP E + H D L+T+L + GL V+
Sbjct: 136 FSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKA 195
Query: 238 HDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNGKAT 282
DG W+ V G+ ++NIGD ++ S+G + S HR V+N + T
Sbjct: 196 KDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHR-VINPEGT 239
>pdb|1B12|A Chain A, Crystal Structure Of Type 1 Signal Peptidase From
Escherichia Coli In Complex With A Beta-Lactam Inhibitor
pdb|1B12|B Chain B, Crystal Structure Of Type 1 Signal Peptidase From
Escherichia Coli In Complex With A Beta-Lactam Inhibitor
pdb|1B12|C Chain C, Crystal Structure Of Type 1 Signal Peptidase From
Escherichia Coli In Complex With A Beta-Lactam Inhibitor
pdb|1B12|D Chain D, Crystal Structure Of Type 1 Signal Peptidase From
Escherichia Coli In Complex With A Beta-Lactam Inhibitor
Length = 248
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 220 HGLLTILMQNDHVGLHVRHDGK----WIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRA 275
H +LT+ + D VG++ + G+ WI PPG + + +GD+ + ++ +Y + A
Sbjct: 160 HRILTVPIAQDQVGMYYQQPGQQLATWI---VPPGQYFM-MGDNRDNSADSRYWGFVPEA 215
Query: 276 VVNGKATRI 284
+ G+AT I
Sbjct: 216 NLVGRATAI 224
>pdb|1KN9|A Chain A, Crystal Structure Of A Bacterial Signal Peptidase Apo-
Enzyme, Implications For Signal Peptide Binding And The
Ser-Lys Dyad Mechanism.
pdb|1KN9|B Chain B, Crystal Structure Of A Bacterial Signal Peptidase Apo-
Enzyme, Implications For Signal Peptide Binding And The
Ser-Lys Dyad Mechanism.
pdb|1KN9|C Chain C, Crystal Structure Of A Bacterial Signal Peptidase Apo-
Enzyme, Implications For Signal Peptide Binding And The
Ser-Lys Dyad Mechanism.
pdb|1KN9|D Chain D, Crystal Structure Of A Bacterial Signal Peptidase Apo-
Enzyme, Implications For Signal Peptide Binding And The
Ser-Lys Dyad Mechanism.
pdb|3IIQ|A Chain A, Crystallographic Analysis Of Bacterial Signal Peptidase In
Ternary Complex With Arylomycin A2 And A Beta-Sultam
Inhibitor
pdb|3IIQ|B Chain B, Crystallographic Analysis Of Bacterial Signal Peptidase In
Ternary Complex With Arylomycin A2 And A Beta-Sultam
Inhibitor
Length = 249
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 220 HGLLTILMQNDHVGLHVRHDGK----WIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRA 275
H +LT+ + D VG++ + G+ WI PPG + + +GD+ + ++ +Y + A
Sbjct: 161 HRILTVPIAQDQVGMYYQQPGQQLATWI---VPPGQYFM-MGDNRDNSADSRYWGFVPEA 216
Query: 276 VVNGKATRI 284
+ G+AT I
Sbjct: 217 NLVGRATAI 225
>pdb|1T7D|A Chain A, Crystal Structure Of Escherichia Coli Type I Signal
Peptidase In Complex With A Lipopeptide Inhibitor
pdb|1T7D|B Chain B, Crystal Structure Of Escherichia Coli Type I Signal
Peptidase In Complex With A Lipopeptide Inhibitor
pdb|3S04|A Chain A, Crystal Structure Of Escherichia Coli Type I Signal
Peptidase In Complex With An Arylomycin Lipoglycopeptide
Antibiotic
pdb|3S04|B Chain B, Crystal Structure Of Escherichia Coli Type I Signal
Peptidase In Complex With An Arylomycin Lipoglycopeptide
Antibiotic
Length = 250
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 220 HGLLTILMQNDHVGLHVRHDGK----WIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRA 275
H +LT+ + D VG++ + G+ WI PPG + + +GD+ + ++ +Y + A
Sbjct: 162 HRILTVPIAQDQVGMYYQQPGQQLATWI---VPPGQYFM-MGDNRDNSADSRYWGFVPEA 217
Query: 276 VVNGKATRI 284
+ G+AT I
Sbjct: 218 NLVGRATAI 226
>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A
Tripeptide Phosphonate Inhibitor
Length = 253
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 25/85 (29%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESYIQKAMDLETDSHQLLVVNL 201
L+E++ Q ++ L VVNL
Sbjct: 143 NLKETWGQPSV--------LQVVNL 159
>pdb|3R3G|B Chain B, Structure Of Human Thrombin With Residues 145-150 Of
Murine Thrombin
Length = 259
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 19/85 (22%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESYIQKAMDLETDSHQLLVVNL 201
L E++ +++ Q VVNL
Sbjct: 143 NLRETWTTNINEIQPSVLQ--VVNL 165
>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride
pdb|2A0Q|D Chain D, Structure Of Thrombin In 400 Mm Potassium Chloride
Length = 257
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 20/83 (24%)
Query: 117 TSFNVNVDKTLFWRDYLKIHVHPQFNAPQN------------PLGFSETIQEYCKRVREL 164
T + N++K KI++HP++N +N P+ FS+ I C RE
Sbjct: 69 TRYEANIEKISM---LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRET 125
Query: 165 ANELL----KGIMESLG-LEESY 182
A LL KG + G L+E++
Sbjct: 126 AASLLQAGYKGRVTGWGNLKETW 148
>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SFQ|E Chain E, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack
pdb|1SG8|B Chain B, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SG8|E Chain E, Crystal Structure Of The Procoagulant Fast Form Of
Thrombin
pdb|1SGI|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SGI|E Chain E, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1SHH|B Chain B, Slow Form Of Thrombin Bound With Ppack
pdb|1SHH|E Chain E, Slow Form Of Thrombin Bound With Ppack
pdb|2HWL|B Chain B, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|2HWL|D Chain D, Crystal Structure Of Thrombin In Complex With Fibrinogen
Gamma' Peptide
pdb|3BV9|B Chain B, Structure Of Thrombin Bound To The Inhibitor Fm19
Length = 259
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 15/67 (22%)
Query: 117 TSFNVNVDKTLFWRDYLKIHVHPQFNAPQN------------PLGFSETIQEYCKRVREL 164
T + N++K KI++HP++N +N P+ FS+ I C RE
Sbjct: 69 TRYEANIEKISM---LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRET 125
Query: 165 ANELLKG 171
A LL+
Sbjct: 126 AASLLQA 132
>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
pdb|1MH0|B Chain B, Crystal Structure Of The Anticoagulant Slow Form Of
Thrombin
Length = 287
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 15/67 (22%)
Query: 117 TSFNVNVDKTLFWRDYLKIHVHPQFNAPQN------------PLGFSETIQEYCKRVREL 164
T + N++K KI++HP++N +N P+ FS+ I C RE
Sbjct: 99 TRYEANIEKISM---LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRET 155
Query: 165 ANELLKG 171
A LL+
Sbjct: 156 AASLLQA 162
>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165
Length = 250
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 15/67 (22%)
Query: 117 TSFNVNVDKTLFWRDYLKIHVHPQFNAPQN------------PLGFSETIQEYCKRVREL 164
T++ N++K KI++HP++N +N P+ FS+ I C RE
Sbjct: 69 TAYERNIEKISM---LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRET 125
Query: 165 ANELLKG 171
A LL+
Sbjct: 126 AASLLQA 132
>pdb|1XQB|A Chain A, X-Ray Structure Of Yaeb From Haemophilus Influenzae.
Northeast Structural Genomics Research Consortium
(Nesgc) Target Ir47.
pdb|1XQB|B Chain B, X-Ray Structure Of Yaeb From Haemophilus Influenzae.
Northeast Structural Genomics Research Consortium
(Nesgc) Target Ir47
Length = 247
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 198 VVNLYPPCPQPEVVMGLPPHSDHGLLTILMQNDHVGLHVRHDGKWIPVNPPP 249
+V L PP PE V GL S L ++ Q D + GKW P PP
Sbjct: 35 IVELLPPYNSPEAVRGLEQFSH---LWLIFQXDQI-----QQGKWQPTVRPP 78
>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin
With The Inhibitor Sdz 229-357
pdb|1RIW|B Chain B, Thrombin In Complex With Natural Product Inhibitor
Oscillarin
pdb|2PKS|B Chain B, Thrombin In Complex With Inhibitor
pdb|3PO1|B Chain B, Thrombin In Complex With Benzothiazole Guanidine
Length = 147
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELLKG 171
KI++HP++N +N P+ FS+ I C RE A LL+
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 132
>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190ALA190 PROTEASE, Structure-Based Drug Design
pdb|1SB1|H Chain H, Novel Non-Covalent Thrombin Inhibitors Incorporating P1
4,5,6,7- Tetrahydrobenzothiazole Arginine Side Chain
Mimetics
pdb|2PW8|H Chain H, Crystal Structure Of Sulfo-Hirudin Complexed To Thrombin
pdb|3DD2|H Chain H, Crystal Structure Of An Rna Aptamer Bound To Human
Thrombin
pdb|1GJ4|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa,
Ser190/ala190 Protease, Structure-based Drug Design
Length = 258
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 NLKETW 148
>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent,
Benzamidine-Based Synthetic Inhibitor
pdb|1D3D|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzothiophene Inhibitor 4
pdb|1EB1|H Chain H, Complex Structure Of Human Thrombin With N-Methyl-Arginine
Inhibitor
pdb|1GHV|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1YPE|H Chain H, Thrombin Inhibitor Complex
pdb|1YPG|H Chain H, Thrombin Inhibitor Complex
pdb|1YPJ|H Chain H, Thrombin Inhibitor Complex
pdb|1YPK|H Chain H, Thrombin Inhibitor Complex
pdb|1YPL|H Chain H, X-Ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1008
pdb|1YPM|H Chain H, X-ray Crystal Structure Of Thrombin Inhibited By Synthetic
Cyanopeptide Analogue Ra-1014
pdb|2ANM|H Chain H, Ternary Complex Of An Orally Active Thrombin Inhibitor
With Human Thrombin And A C-Terminal Hirudin Derived
Exo-Sit Inhibitor
pdb|2CF9|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|1GHX|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|1GHY|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-Centered Short Hydrogen Bonding Network At The
Active Site
pdb|2CF8|H Chain H, Complex Of Recombinant Human Thrombin With A Inhibitor
pdb|2CN0|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Inhibitor
pdb|3BIU|H Chain H, Human Thrombin-In Complex With Ub-Thr10
pdb|3BIV|H Chain H, Human Thrombin-In Complex With Ub-Thr11
pdb|2V3H|H Chain H, Thrombin With 3-Cycle No F
pdb|2V3O|H Chain H, Thrombin With 3-Cycle With F
pdb|4AX9|H Chain H, Human Thrombin Complexed With Napsagatran, Ro0466240
pdb|4AYV|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AYY|B Chain B, Human Thrombin - Inhibitor Complex
pdb|4AZ2|B Chain B, Human Thrombin - Inhibitor Complex
pdb|1GHW|H Chain H, A Novel Serine Protease Inhibition Motif Involving A
Multi-centered Short Hydrogen Bonding Network At The
Active Site
Length = 257
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 NLKETW 148
>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1
Length = 261
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 87 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 146
Query: 178 -LEESY 182
L+E++
Sbjct: 147 NLKETW 152
>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To
Ppack
Length = 259
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 NLKETW 148
>pdb|2HNT|E Chain E, Crystallographic Structure Of Human Gamma-Thrombin
Length = 81
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELLKG 171
KI++HP++N +N P+ FS+ I C RE A LL+
Sbjct: 10 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 59
>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ0|D Chain D, Crystal Structure Of The Potent Anticoagulant Thrombin
Mutant W215aE217A IN FREE FORM
pdb|1TQ7|B Chain B, Crystal Structure Of The Anticoagulant Thrombin Mutant
W215aE217A Bound To Ppack
Length = 257
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 NLKETW 148
>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186,
186a, 186b, 186c And 222 Replaced By Murine Thrombin
Equivalents
Length = 259
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 NLKETW 148
>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
pdb|1RD3|D Chain D, 2.5a Structure Of Anticoagulant Thrombin Variant E217k
Length = 259
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 NLKETW 148
>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
pdb|1BTH|K Chain K, Structure Of Thrombin Complexed With Bovine Pancreatic
Trypsin Inhibitor
Length = 259
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 NLKETW 148
>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+
Form
pdb|3JZ2|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E Form
pdb|3QGN|B Chain B, The Allosteric E-E Equilibrium Is A Key Property Of The
Trypsin Fold
Length = 259
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 PLKETW 148
>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a
pdb|2PGQ|B Chain B, Human Thrombin Mutant C191a-C220a In Complex With The
Inhibitor Ppack
Length = 259
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 NLKETW 148
>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To
D-Phe-Pro-Arg- Chloromethylketone
pdb|3S7H|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|B Chain B, Structure Of Thrombin Mutant Y225p In The E Form
pdb|3S7K|D Chain D, Structure Of Thrombin Mutant Y225p In The E Form
Length = 259
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 NLKETW 148
>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A
Tripeptide Phosphonate Inhibitor
Length = 260
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELLKG 171
KI++HP++N +N P+ FS+ I C RE A LL+
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 132
>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D-
Phe-Pro-Arg-Chloromethylketone
Length = 259
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 NLKETW 148
>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To
Ppack
Length = 259
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 NLKETW 148
>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1ABJ|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of
The S' Subsites Of Substrates And Inhibitors
pdb|1DWB|H Chain H, Crystallographic Analysis At 3.0-angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-directed Inhibitors
pdb|1DWC|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWD|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1DWE|H Chain H, Crystallographic Analysis At 3.0-Angstroms Resolution Of
The Binding To Human Thrombin Of Four Active
Site-Directed Inhibitors
pdb|1FPH|H Chain H, The Interaction Of Thrombin With Fibrinogen: A Structural
Basis For Its Specificity
pdb|1HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of Alpha-
Thrombin
pdb|1IHS|H Chain H, Crystal Structure Of The Complex Of Human Alpha-thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1IHT|H Chain H, Crystal Structure Of The Complex Of Human Alpha-Thrombin
And Non- Hydrolyzable Bifunctional Inhibitors,
Hirutonin-2 And Hirutonin-6
pdb|1PPB|H Chain H, The Refined 1.9 Angstroms Crystal Structure Of Human
Alpha-Thrombin: Interaction With D-Phe-Pro-Arg
Chloromethylketone And Significance Of The
Tyr-Pro-Pro-Trp Insertion Segment
pdb|1THR|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1THS|H Chain H, Structures Of Thrombin Complexes With A Designed And A
Natural Exosite Inhibitor
pdb|1TMB|H Chain H, Molecular Basis For The Inhibition Of Human Alpha-thrombin
By The Macrocyclic Peptide Cyclotheonamide A
pdb|2HGT|H Chain H, Structure Of The Hirugen And Hirulog 1 Complexes Of
Alpha-Thrombin
pdb|2HPP|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-Thrombin
pdb|2HPQ|H Chain H, Structures Of The Noncovalent Complexes Of Human And
Bovine Prothrombin Fragment 2 With Human Ppack-thrombin
pdb|3HTC|H Chain H, The Structure Of A Complex Of Recombinant Hirudin And
Human Alpha-Thrombin
pdb|4HTC|H Chain H, The Refined Structure Of The Hirudin-Thrombin Complex
pdb|1HUT|H Chain H, The Structure Of Alpha-Thrombin Inhibited By A 15-Mer
Single-Stranded Dna Aptamer
pdb|1NRN|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRO|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRP|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRQ|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRR|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1NRS|H Chain H, Crystallographic Structures Of Thrombin Complexed With
Thrombin Receptor Peptides: Existence Of Expected And
Novel Binding Modes
pdb|1TMT|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1TMU|H Chain H, Changes In Interactions In Complexes Of Hirudin
Derivatives And Human Alpha-Thrombin Due To Different
Crystal Forms
pdb|1HLT|H Chain H, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HLT|K Chain K, The Structure Of A Nonadecapeptide Of The Fifth Egf Domain
Of Thrombomodulin Complexed With Thrombin
pdb|1HAH|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1HAI|H Chain H, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|3HAT|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1FPC|H Chain H, Active Site Mimetic Inhibition Of Thrombin
pdb|1HBT|H Chain H, Human Alpha-Thrombin Complexed With A Peptidyl Pyridinium
Methyl Ketone Containing Bivalent Inhibitor
pdb|1HDT|H Chain H, Structure Of A Retro-Binding Peptide Inhibitor Complexed
With Human Alpha-Thrombin
pdb|1HAO|H Chain H, Complex Of Human Alpha-thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (based On Nmr Model Of
Dna)
pdb|1HAP|H Chain H, Complex Of Human Alpha-Thrombin With A 15mer
Oligonucleotide Ggttggtgtggttgg (Based On X-Ray Model Of
Dna)
pdb|1AHT|H Chain H, Crystal Structure Of Human Alpha-Thrombin Complexed With
Hirugen And P-Amidinophenylpyruvate At 1.6 Angstroms
Resolution
pdb|1DIT|H Chain H, Complex Of A Divalent Inhibitor With Thrombin
pdb|1TOM|H Chain H, Alpha-Thrombin Complexed With Hirugen
pdb|1HXF|H Chain H, Human Thrombin Complex With Hirudin Variant
pdb|1BMM|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-4-[(Aminoiminomethyl)
Amino]-N-[[1-[3-Hydroxy-2-[(2-
Naphthalenylsulfonyl)amino]-1-
Oxopropyl]-2-Pyrrolidinyl] Methyl]butanamide
(Bms-186282)
pdb|1BMN|H Chain H, Human Alpha-Thrombin Complexed With
[s-(R,R)]-1-(Aminoiminomethyl)-
N-[[1-[n-[(2-Naphthalenylsulfonyl)-L-Seryl]-
Pyrrolidinyl]methyl]-3- Piperidenecarboxamide
(Bms-189090)
pdb|1UMA|H Chain H, Alpha-Thrombin (Hirugen) Complexed With
Na-(N,N-Dimethylcarbamoyl)- Alpha-Azalysine
pdb|1LHD|H Chain H, Human Alpha-thrombin Complexed With
Ac-(d)phe-pro-borolys-oh
pdb|1LHE|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-N-
Butyl-Amidino-Glycine-Oh
pdb|1LHF|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-Boro-
Homolys-Oh
pdb|1LHG|H Chain H, Human Alpha-Thrombin Complexed With Ac-(D)phe-Pro-
Boroornithine-Oh
pdb|1LHC|H Chain H, Human Alpha-Thrombin Complexed With
Ac-(D)phe-Pro-Boroarg-Oh
pdb|1AD8|H Chain H, Complex Of Thrombin With And Inhibitor Containing A Novel
P1 Moiety
pdb|1AI8|H Chain H, Human Alpha-Thrombin Ternary Complex With The Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Borompg
pdb|1AIX|H Chain H, Human Alpha-Thrombin Ternary Complex With Exosite
Inhibitor Hirugen And Active Site Inhibitor
Phch2oco-D-Dpa-Pro-Boroval
pdb|1AE8|H Chain H, Human Alpha-Thrombin Inhibition By
Eoc-D-Phe-Pro-Azalys-Onp
pdb|1AFE|H Chain H, Human Alpha-Thrombin Inhibition By Cbz-Pro-Azalys-Onp
pdb|1UVS|H Chain H, Bovine Thrombin--Bm51.1011 Complex
pdb|5GDS|H Chain H, Hirunorms Are True Hirudin Mimetics. The Crystal Structure
Of Human Alpha-Thrombin:hirunorm V Complex
pdb|1AY6|H Chain H, Thrombin Inhibitor From Theonalla, Cyclotheanamide-Based
Macrocyclic Tripeptide Motif
pdb|1A46|H Chain H, Thrombin Complexed With Hirugen And A Beta-Strand Mimetic
Inhibitor
pdb|1A4W|H Chain H, Crystal Structures Of Thrombin With Thiazole-Containing
Inhibitors: Probes Of The S1' Binding Site
pdb|1A5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1B5G|H Chain H, Human Thrombin Complexed With Novel Synthetic Peptide
Mimetic Inhibitor And Hirugen
pdb|1TBZ|H Chain H, Human Thrombin With Active Site N-Methyl-D
Phenylalanyl-N-[5-
(Aminoiminomethyl)amino]-1-{{benzothiazolyl)carbonyl]
Butyl]-L- Prolinamide Trifluroacetate And
Exosite-Hirugen
pdb|1A2C|H Chain H, Structure Of Thrombin Inhibited By Aeruginosin298-A From A
Blue-Green Alga
pdb|1A61|H Chain H, Thrombin Complexed With A Beta-Mimetic Thiazole-Containing
Inhibitor
pdb|1A3B|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog1
pdb|1A3E|H Chain H, Complex Of Human Alpha-Thrombin With The Bifunctional
Boronate Inhibitor Borolog2
pdb|1AWF|H Chain H, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|B Chain B, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1AWH|D Chain D, Novel Covalent Thrombin Inhibitor From Plant Extract
pdb|1BCU|H Chain H, Alpha-Thrombin Complexed With Hirugen And Proflavin
pdb|8KME|2 Chain 2, Crystal Structure Of Human Alpha-thrombin Inhibited With
Sel2770.
pdb|1BA8|B Chain B, Thrombin Inhibitor With A Rigid Tripeptidyl Aldehydes
pdb|1BB0|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|1CA8|B Chain B, Thrombin Inhibitors With Rigid Tripeptidyl Aldehydes
pdb|4THN|H Chain H, The Crystal Structure Of Alpha-Thrombin-Hirunorm Iv
Complex Reveals A Novel Specificity Site Recognition
Mode.
pdb|1QBV|H Chain H, Crystal Structure Of Thrombin Complexed With An
Guanidine-Mimetic Inhibitor
pdb|1D4P|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
5- Amidinoindole-4-benzylpiperidine Inhibitor
pdb|7KME|H Chain H, Crystal Structure Of Human Alpha-Thrombin Inhibited With
Sel2711.
pdb|1QHR|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ1|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ6|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1QJ7|B Chain B, Novel Covalent Active Site Thrombin Inhibitors
pdb|1D3P|B Chain B, Crystal Structure Of Human Aplha-Thrombin In Complex With
Benzo[b]thiophene Inhibitor 3
pdb|1D3Q|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 2
pdb|1D3T|B Chain B, Crystal Structure Of Human Alpha Thrombin In Complex With
Benzo[b]thiophene Inhibitor 1
pdb|1C4U|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4V|2 Chain 2, Selective Non Electrophilic Thrombin Inhibitors With
Cyclohexyl Moieties.
pdb|1C4Y|2 Chain 2, Selective Non-Electrophilic Thrombin Inhibitors
pdb|1DE7|H Chain H, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1DE7|K Chain K, Interaction Of Factor Xiii Activation Peptide With
Alpha-Thrombin: Crystal Structure Of The
Enzyme-Substrate Complex
pdb|1G30|B Chain B, Thrombin Inhibitor Complex
pdb|1G32|B Chain B, Thrombin Inhibitor Complex
pdb|1KTS|B Chain B, Thrombin Inhibitor Complex
pdb|1KTT|B Chain B, Thrombin Inhibitor Complex
pdb|1K21|H Chain H, Human Thrombin-Inhibitor Complex
pdb|1K22|H Chain H, Human Thrombin-inhibitor Complex
pdb|1NY2|2 Chain 2, Human Alpha Thrombin Inhibited By Rppgf And Hirugen
pdb|1O2G|H Chain H, Elaborate Manifold Of Short Hydrogen Bond Arrays Mediating
Binding Of Active Site-Directed Serine Protease
Inhibitors
pdb|1OYT|H Chain H, Complex Of Recombinant Human Thrombin With A Designed
Fluorinated Inhibitor
pdb|1NO9|H Chain H, Design Of Weakly Basic Thrombin Inhibitors Incorporating
Novel P1 Binding Functions: Molecular And X-Ray
Crystallographic Studies.
pdb|1OOK|B Chain B, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
pdb|1P8V|C Chain C, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
pdb|1NU7|B Chain B, Staphylocoagulase-Thrombin Complex
pdb|1NU7|F Chain F, Staphylocoagulase-Thrombin Complex
pdb|1NZQ|H Chain H, D-Phe-Pro-Arg-Type Thrombin Inhibitor
pdb|1O0D|H Chain H, Human Thrombin Complexed With A D-Phe-Pro-Arg-Type
Inhibitor And A C- Terminal Hirudin Derived Exo-Site
Inhibitor
pdb|1MU6|B Chain B, Crystal Structure Of Thrombin In Complex With L-378,622
pdb|1MU8|B Chain B, Thrombin-Hirugen_l-378,650
pdb|1MUE|B Chain B, Thrombin-Hirugen-L405,426
pdb|1SR5|C Chain C, Antithrombin-Anhydrothrombin-Heparin Ternary Complex
Structure
pdb|1O5G|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|1XMN|B Chain B, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|D Chain D, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|F Chain F, Crystal Structure Of Thrombin Bound To Heparin
pdb|1XMN|H Chain H, Crystal Structure Of Thrombin Bound To Heparin
pdb|1WAY|B Chain B, Active Site Thrombin Inhibitors
pdb|1T4U|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|1T4V|H Chain H, Crystal Structure Analysis Of A Novel Oxyguanidine Bound
To Thrombin
pdb|2AFQ|B Chain B, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2AFQ|D Chain D, 1.9 Angstrom Crytal Structure Of Wild-Type Human Thrombin
In The Sodium Free State
pdb|2A45|B Chain B, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|2A45|E Chain E, Crystal Structure Of The Complex Between Thrombin And The
Central "e" Region Of Fibrin
pdb|1W7G|H Chain H, Alpha-Thrombin Complex With Sulfated Hirudin (Residues
54-65) And L- Arginine Template Inhibitor Cs107
pdb|2FES|H Chain H, Orally Active Thrombin Inhibitors
pdb|2C8W|B Chain B, Thrombin Inhibitors
pdb|2C8X|B Chain B, Thrombin Inhibitors
pdb|2C8Y|B Chain B, Thrombin Inhibitors
pdb|2C8Z|B Chain B, Thrombin Inhibitors
pdb|2C90|B Chain B, Thrombin Inhibitors
pdb|2C93|B Chain B, Thrombin Inhibitors
pdb|2FEQ|H Chain H, Orally Active Thrombin Inhibitors
pdb|2BVS|H Chain H, Human Thrombin Complexed With Fragment-Based Small
Molecules Occupying The S1 Pocket
pdb|2BVX|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-P2-Linker
pdb|2BXT|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2BXU|H Chain H, Design And Discovery Of Novel, Potent Thrombin Inhibitors
With A Solubilizing Cationic P1-p2-linker
pdb|2A2X|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
Inh12
pdb|2ANK|H Chain H, Orally Active Thrombin Inhibitors In Complex With Thrombin
And An Exosite Decapeptide
pdb|2GDE|H Chain H, Thrombin In Complex With Inhibitor
pdb|2H9T|H Chain H, Crystal Structure Of Human Alpha-Thrombin In Complex With
Suramin
pdb|2JH0|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH5|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|2JH6|D Chain D, Human Thrombin Hirugen Inhibitor Complex
pdb|1C1U|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1V|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C1W|H Chain H, Recruiting Zinc To Mediate Potent, Specific Inhibition Of
Serine Proteases
pdb|1C5L|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5N|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1C5O|H Chain H, Structural Basis For Selectivity Of A Small Molecule,
S1-Binding, Sub- Micromolar Inhibitor Of Urokinase Type
Plasminogen Activator
pdb|1HXE|H Chain H, Serine Protease
pdb|2UUF|B Chain B, Thrombin-Hirugen Binary Complex At 1.26a Resolution
pdb|2UUJ|B Chain B, Thrombin-Hirugen-Gw473178 Ternary Complex At 1.32a
Resolution
pdb|2UUK|B Chain B, Thrombin-Hirugen-Gw420128 Ternary Complex At 1.39a
Resolution
pdb|3BF6|H Chain H, Thrombin:suramin Complex
pdb|2R2M|B Chain B, 2-(2-chloro-6-fluorophenyl)acetamides As Potent Thrombin
Inhibitors
pdb|3EGK|H Chain H, Knoble Inhibitor
pdb|2ZC9|H Chain H, Thrombin In Complex With Inhibitor
pdb|2ZDA|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZDV|H Chain H, Exploring Thrombin S1 Pocket
pdb|2ZF0|H Chain H, Exploring Thrombin S1 Pocket
pdb|3E6P|H Chain H, Crystal Structure Of Human Meizothrombin Desf1
pdb|2ZFF|H Chain H, Exploring Thrombin S1-Pocket
pdb|2ZFP|H Chain H, Thrombin Inibition
pdb|2ZGB|H Chain H, Thrombin Inhibition
pdb|2ZGX|H Chain H, Thrombin Inhibition
pdb|2ZFQ|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZFR|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHQ|H Chain H, Thrombin Inhibition
pdb|2ZI2|H Chain H, Thrombin Inhibition
pdb|2ZIQ|H Chain H, Thrombin Inhibition
pdb|2ZG0|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHE|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHF|H Chain H, Exploring Thrombin S3 Pocket
pdb|2ZHW|H Chain H, Exploring Thrombin S3 Pocket
pdb|3C27|B Chain B, Cyanofluorophenylacetamides As Orally Efficacious Thrombin
Inhibitors
pdb|2ZNK|H Chain H, Thrombin Inhibition
pdb|2ZO3|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3D49|H Chain H, Thrombin Inhibition
pdb|3DA9|B Chain B, Crystal Structure Of Thrombin In Complex With Inhibitor
pdb|3DHK|H Chain H, Bisphenylic Thrombin Inhibitors
pdb|3DT0|H Chain H, Understanding Thrombin Inhibition
pdb|3DUX|H Chain H, Understanding Thrombin Inhibition
pdb|3EQ0|H Chain H, Thrombin Inhibitor
pdb|3F68|H Chain H, Thrombin Inhibition
pdb|3PMH|B Chain B, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
pdb|3P6Z|B Chain B, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P6Z|H Chain H, Structural Basis Of Thrombin Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3LDX|H Chain H, Discovery And Clinical Evaluation Of Rwj-671818, A
Thrombin Inhibitor With An Oxyguanidine P1 Motif
pdb|3P70|B Chain B, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|D Chain D, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|F Chain F, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3P70|H Chain H, Structural Basis Of Thrombin-Mediated Factor V Activation:
Essential Role Of The Hirudin-Like Sequence
Glu666-Glu672 For Processing At The Heavy Chain-B Domain
Junction
pdb|3TU7|H Chain H, Human Alpha-Thrombin Complexed With
N-(Methylsulfonyl)-D-Phenylalanyl-
N-((1-Carbamimidoyl-4-Piperidinyl)methyl)-L-Prolinamide
(Bms-189664)
pdb|3QLP|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And A Modified Thrombin Binding Aptamer (Mtba)
pdb|3P17|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3B23|B Chain B, Crystal Structure Of Thrombin-Variegin Complex: Insights
Of A Novel Mechanism Of Inhibition And Design Of Tunable
Thrombin Inhibitors
pdb|3QTO|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QTV|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QX5|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3QWC|H Chain H, Thrombin Inhibition By Pyridin Derivatives
pdb|3U69|H Chain H, Unliganded Wild-Type Human Thrombin
pdb|3U8T|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Cys
pdb|3RLW|H Chain H, Human Thrombin In Complex With Mi328
pdb|3RLY|H Chain H, Human Thrombin In Complex With Mi329
pdb|3RM0|H Chain H, Human Thrombin In Complex With Mi354
pdb|3RM2|H Chain H, Human Thrombin In Complex With Mi003
pdb|3RML|H Chain H, Human Thrombin In Complex With Mi331
pdb|3RMM|H Chain H, Human Thrombin In Complex With Mi332
pdb|3RMN|H Chain H, Human Thrombin In Complex With Mi341
pdb|3RMO|H Chain H, Human Thrombin In Complex With Mi004
pdb|3U8O|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-D-Thr
pdb|3U8R|H Chain H, Human Thrombin Complexed With D-Phe-Pro-D-Arg-Ile
pdb|3SHA|H Chain H, Human Thrombin In Complex With Ubthr97
pdb|3SHC|H Chain H, Human Thrombin In Complex With Ubthr101
pdb|3SI3|H Chain H, Human Thrombin In Complex With Ubthr103
pdb|3SI4|H Chain H, Human Thrombin In Complex With Ubthr104
pdb|3SV2|H Chain H, Human Thrombin In Complex With Ubthr105
pdb|4E7R|H Chain H, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4E7R|G Chain G, Thrombin In Complex With 3-Amidinophenylalanine Inhibitor
pdb|4DIH|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Sodium Ions
pdb|4DII|H Chain H, X-Ray Structure Of The Complex Between Human Alpha
Thrombin And Thrombin Binding Aptamer In The Presence Of
Potassium Ions
pdb|3T5F|H Chain H, Human Thrombin In Complex With Mi340
pdb|3UTU|H Chain H, High Affinity Inhibitor Of Human Thrombin
pdb|3U98|H Chain H, Human Thrombin In Complex With Mi001
pdb|3U9A|H Chain H, Human Thrombin In Complex With Mi330
pdb|4E05|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|4E06|H Chain H, Anophelin From The Malaria Vector Inhibits Thrombin
Through A Novel Reverse-Binding Mechanism
pdb|3UWJ|H Chain H, Human Thrombin In Complex With Mi353
pdb|4BAH|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAK|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAM|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAN|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAO|B Chain B, Thrombin In Complex With Inhibitor
pdb|4BAQ|B Chain B, Thrombin In Complex With Inhibitor
Length = 259
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 NLKETW 148
>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors
Length = 259
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 NLKETW 148
>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|D Chain D, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1JOU|F Chain F, Crystal Structure Of Native S195a Thrombin With An
Unoccupied Active Site
pdb|1TB6|H Chain H, 2.5a Crystal Structure Of The
Antithrombin-Thrombin-Heparin Ternary Complex
pdb|2B5T|B Chain B, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|2B5T|D Chain D, 2.1 Angstrom Structure Of A Nonproductive Complex Between
Antithrombin, Synthetic Heparin Mimetic Sr123781 And Two
S195a Thrombin Molecules
pdb|3B9F|H Chain H, 1.6 A Structure Of The Pci-Thrombin-Heparin Complex
pdb|3GIS|B Chain B, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|D Chain D, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|F Chain F, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3LU9|B Chain B, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|3LU9|E Chain E, Crystal Structure Of Human Thrombin Mutant S195a In
Complex Extracellular Fragment Of Human Par1
pdb|4DT7|B Chain B, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DT7|D Chain D, Crystal Structure Of Thrombin Bound To The Activation
Domain Qedqvdprlidgkmtrrgds Of Protein C
pdb|4DY7|B Chain B, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
pdb|4DY7|E Chain E, Crystal Structures Of Protease Nexin-1 In Complex With
S195a Thrombin
Length = 259
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 NLKETW 148
>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN
Thrombin (Space Group P2(1)2(1)2(1))
pdb|3HKJ|B Chain B, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
pdb|3HKJ|E Chain E, Crystal Structure Of Human Thrombin Mutant W215aE217A IN
COMPLEX WITH The Extracellular Fragment Of Human Par1
Length = 259
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 NLKETW 148
>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To
D-phe-pro-arg- Chloromethylketone
Length = 259
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 NLKETW 148
>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|N Chain N, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|O Chain O, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|P Chain P, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1E0F|D Chain D, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|F Chain F, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
pdb|1E0F|E Chain E, Crystal Structure Of The Human Alpha-Thrombin-Haemadin
Complex: An Exosite Ii-Binding Inhibitor
Length = 259
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELLKG 171
KI++HP++N +N P+ FS+ I C RE A LL+
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 132
>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With
Fibrinopeptide A (7- 16)
pdb|1JMO|H Chain H, Crystal Structure Of The Heparin Cofactor Ii-S195a
Thrombin Complex
Length = 260
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 84 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 143
Query: 178 -LEESY 182
L+E++
Sbjct: 144 NLKETW 149
>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free
Form
Length = 250
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELLKG 171
KI++HP++N +N P+ FS+ I C RE A LL+
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 132
>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self-
Inhibited Conformation
pdb|3BEI|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A
Self_inhibited Conformation
pdb|3BEF|B Chain B, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3BEF|E Chain E, Crystal Structure Of Thrombin Bound To The Extracellular
Fragment Of Par1
pdb|3QDZ|B Chain B, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4.
pdb|3QDZ|D Chain D, Crystal Structure Of The Human Thrombin Mutant D102n In
Complex With The Extracellular Fragment Of Human Par4
Length = 259
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRNIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 NLKETW 148
>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K
Length = 259
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 17/66 (25%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELL----KGIMESLG 177
KI++HP++N +N P+ FS+ I C RE A LL KG + G
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWG 142
Query: 178 -LEESY 182
L+E++
Sbjct: 143 NLKETW 148
>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
At 1.8a
pdb|1NT1|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor
pdb|1TA2|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 1
pdb|1TA6|A Chain A, Crystal Structure Of Thrombin In Complex With Compound 14b
pdb|1SL3|A Chain A, Crystal Structue Of Thrombin In Complex With A Potent P1
Heterocycle- Aryl Based Inhibitor
pdb|1Z71|A Chain A, Thrombin And P2 Pyridine N-oxide Inhibitor Complex
Structure
pdb|1ZRB|A Chain A, Thrombin In Complex With An Azafluorenyl Inhibitor 23b
pdb|1ZGI|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 21
pdb|1ZGV|A Chain A, Thrombin In Complex With An Oxazolopyridine Inhibitor 2
pdb|3C1K|A Chain A, Crystal Structure Of Thrombin In Complex With Inhibitor 15
Length = 287
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELLKG 171
KI++HP++N +N P+ FS+ I C RE A LL+
Sbjct: 112 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 161
>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electrophilic Inhibitors Having Cyclohexyl Moieties
At P1
pdb|1G37|A Chain A, Crystal Structure Of Human Alpha-thrombin Complexed With
Bch-10556 And Exosite-directed Peptide
Length = 287
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELLKG 171
KI++HP++N +N P+ FS+ I C RE A LL+
Sbjct: 113 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 162
>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective
Non-Electophilic Inhibitors Having Cyclohexyl Moieties
At P1
Length = 288
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELLKG 171
KI++HP++N +N P+ FS+ I C RE A LL+
Sbjct: 113 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 162
>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small
Molecules Occupying The S1 Pocket
Length = 252
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELLKG 171
KI++HP++N +N P+ FS+ I C RE A LL+
Sbjct: 83 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 132
>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The
Alternative Form
pdb|3SQH|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The The
Open Form
Length = 290
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELLKG 171
KI++HP++N +N P+ FS+ I C RE A LL+
Sbjct: 114 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 163
>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex
pdb|1NU9|D Chain D, Staphylocoagulase-prethrombin-2 Complex
Length = 291
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELLKG 171
KI++HP++N +N P+ FS+ I C RE A LL+
Sbjct: 115 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 164
>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
pdb|1EOL|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin
Inhibitors And Their Crystal Structures
Length = 289
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELLKG 171
KI++HP++N +N P+ FS+ I C RE A LL+
Sbjct: 115 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 164
>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex
Length = 308
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELLKG 171
KI++HP++N +N P+ FS+ I C RE A LL+
Sbjct: 132 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 181
>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor
Length = 289
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELLKG 171
KI++HP++N +N P+ FS+ I C RE A LL+
Sbjct: 113 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 162
>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel
Bicyclic Lactam Inhibitor
Length = 305
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELLKG 171
KI++HP++N +N P+ FS+ I C RE A LL+
Sbjct: 119 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 168
>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And
Ppack- Thrombin: Changes Accompanying Activation And
Exosite Binding To Thrombin
pdb|1DOJ|A Chain A, Crystal Structure Of Human Alpha-ThrombinRwj-51438 Complex
At 1.7 A
pdb|1XM1|A Chain A, Nonbasic Thrombin Inhibitor Complex
Length = 295
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELLKG 171
KI++HP++N +N P+ FS+ I C RE A LL+
Sbjct: 119 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 168
>pdb|3D4I|A Chain A, Crystal Structure Of The 2h-Phosphatase Domain Of Sts-2
pdb|3D4I|B Chain B, Crystal Structure Of The 2h-Phosphatase Domain Of Sts-2
pdb|3D4I|C Chain C, Crystal Structure Of The 2h-Phosphatase Domain Of Sts-2
pdb|3D4I|D Chain D, Crystal Structure Of The 2h-Phosphatase Domain Of Sts-2
pdb|3D6A|A Chain A, Crystal Structure Of The 2h-Phosphatase Domain Of Sts-2 In
Complex With Tungstate.
pdb|3D6A|B Chain B, Crystal Structure Of The 2h-Phosphatase Domain Of Sts-2 In
Complex With Tungstate.
pdb|3D6A|C Chain C, Crystal Structure Of The 2h-Phosphatase Domain Of Sts-2 In
Complex With Tungstate.
pdb|3D6A|D Chain D, Crystal Structure Of The 2h-Phosphatase Domain Of Sts-2 In
Complex With Tungstate.
pdb|3DB1|A Chain A, Crystal Structure Of The 2h-phosphatase Domain Of Sts-2 In
Complex With Phosphate
pdb|3DB1|B Chain B, Crystal Structure Of The 2h-phosphatase Domain Of Sts-2 In
Complex With Phosphate
pdb|3DB1|C Chain C, Crystal Structure Of The 2h-phosphatase Domain Of Sts-2 In
Complex With Phosphate
pdb|3DB1|D Chain D, Crystal Structure Of The 2h-phosphatase Domain Of Sts-2 In
Complex With Phosphate
Length = 273
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 205 CPQPEVVMGLPPHSDHGLLTILMQNDHVGLHV----RHDGKWIPVNPP 248
C +P ++GLPP ++ + +G+ R DGKW VNPP
Sbjct: 209 CTRP--LLGLPPRECGDFAQLVRKIPSLGMCFCEENREDGKWDLVNPP 254
>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1
Length = 424
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 12/50 (24%)
Query: 134 KIHVHPQFNAPQN------------PLGFSETIQEYCKRVRELANELLKG 171
KI++HP++N +N P+ FS+ I C RE A LL+
Sbjct: 248 KIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQA 297
>pdb|2GU1|A Chain A, Crystal Structure Of A Zinc Containing Peptidase From
Vibrio Cholerae
Length = 361
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 23/128 (17%)
Query: 167 ELLKGIMESLGLEESYIQKAMDLETDSHQLLVVNLYPPCPQPEVVMGLPPHSDHGLLTIL 226
+ L GI LG+ S +QK + ++ D QL ++ P + E++M D G L+ L
Sbjct: 16 DTLSGIFAQLGVPYSILQKILSVDLDHLQL---DMIQPGEELELMM-----DDMGQLSRL 67
Query: 227 MQNDHVGLHVRHDGKWIPVNPPPGSFVVNIGDHMEILSNGKYKSVLHRAVVNG----KAT 282
+ H+ K I GSF D EI +G+++ +L +NG A
Sbjct: 68 I------YHMSIVEKAIYTRENDGSFSY---DFQEI--SGEWREILFSGEINGSFSVSAR 116
Query: 283 RISVATAH 290
R+ + ++
Sbjct: 117 RVGLTSSQ 124
>pdb|1UB2|A Chain A, Crystal Structure Of Catalase-Peroxidase From
Synechococcus Pcc 7942
Length = 720
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 112 PIRWGTSFNVNVDKTLFWRDYLKIHVHPQFNAPQNPLGFSETIQEYCKRVRELANELLKG 171
P+ G + VN+ +W L + + Q + NP+G QE +++ + L+
Sbjct: 9 PVMHGGATTVNISTAEWWPKALNLDILSQHDRKTNPMGPDFNYQEEVQKLDAALKQDLQA 68
Query: 172 IM 173
+M
Sbjct: 69 LM 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,295,716
Number of Sequences: 62578
Number of extensions: 492411
Number of successful extensions: 1075
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 70
length of query: 350
length of database: 14,973,337
effective HSP length: 100
effective length of query: 250
effective length of database: 8,715,537
effective search space: 2178884250
effective search space used: 2178884250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)